Query 003645
Match_columns 805
No_of_seqs 377 out of 2156
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-150 3E-155 1345.1 83.4 769 7-781 8-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-122 8E-127 1083.4 57.0 753 20-783 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 3.6E-46 7.7E-51 436.2 46.7 410 41-481 5-420 (621)
4 PRK10669 putative cation:proto 100.0 9.3E-46 2E-50 431.6 45.9 373 43-437 8-389 (558)
5 PRK03659 glutathione-regulated 100.0 6.6E-45 1.4E-49 425.0 46.8 411 41-481 5-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 6.2E-44 1.3E-48 395.8 44.4 377 41-438 6-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.2E-39 2.6E-44 379.9 38.2 380 40-438 5-389 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.3E-34 2.9E-39 308.4 32.1 270 51-340 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 3.3E-39 7.2E-44 360.8 -4.1 372 49-436 4-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 4.6E-33 1E-37 278.5 31.7 382 36-441 2-392 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9.9E-28 2.1E-32 276.0 39.6 367 29-408 3-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.6E-27 3.5E-32 274.3 38.3 367 47-435 4-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1E-24 2.2E-29 244.3 39.9 380 41-436 6-406 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 6.6E-24 1.4E-28 244.0 37.4 372 50-436 18-416 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1.2E-23 2.6E-28 221.1 26.9 352 41-413 7-361 (574)
16 KOG1965 Sodium/hydrogen exchan 99.8 9.1E-19 2E-23 193.5 23.1 388 41-438 35-456 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 1.4E-16 2.9E-21 162.7 25.5 346 46-404 19-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 2.6E-15 5.6E-20 164.0 33.6 271 101-405 62-363 (423)
19 PRK11175 universal stress prot 99.7 8.2E-16 1.8E-20 166.8 18.3 279 461-778 4-299 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 8.9E-12 1.9E-16 133.9 24.4 270 101-405 52-344 (373)
21 cd01988 Na_H_Antiporter_C The 99.4 1.9E-12 4.1E-17 121.7 12.3 131 462-616 1-131 (132)
22 KOG1966 Sodium/hydrogen exchan 99.3 9E-13 1.9E-17 145.4 5.8 372 51-437 52-449 (670)
23 PRK14856 nhaA pH-dependent sod 99.2 6.1E-09 1.3E-13 113.9 24.5 269 101-405 68-398 (438)
24 PRK09560 nhaA pH-dependent sod 99.1 1.2E-08 2.5E-13 110.1 24.6 270 101-405 59-353 (389)
25 PRK09561 nhaA pH-dependent sod 99.1 2.4E-08 5.1E-13 107.5 24.2 270 101-405 59-351 (388)
26 cd01989 STK_N The N-terminal d 99.1 1.1E-09 2.3E-14 105.2 12.3 139 462-620 1-146 (146)
27 PRK14854 nhaA pH-dependent sod 99.1 6.2E-08 1.3E-12 104.0 26.4 272 101-406 56-349 (383)
28 PRK14855 nhaA pH-dependent sod 99.0 4.5E-08 9.7E-13 106.7 24.2 267 101-406 63-384 (423)
29 PRK15456 universal stress prot 99.0 1.2E-09 2.5E-14 104.5 8.6 136 461-615 3-140 (142)
30 PRK15005 universal stress prot 99.0 2.7E-09 5.8E-14 102.1 9.7 135 461-615 3-142 (144)
31 cd01987 USP_OKCHK USP domain i 98.9 5.8E-09 1.3E-13 97.1 9.8 121 462-615 1-122 (124)
32 PRK15118 universal stress glob 98.9 8.1E-09 1.8E-13 98.9 10.1 133 461-616 4-137 (144)
33 PF06965 Na_H_antiport_1: Na+/ 98.9 1.3E-08 2.9E-13 109.4 11.8 279 101-413 55-359 (378)
34 PF00582 Usp: Universal stress 98.9 8.1E-09 1.8E-13 96.9 9.1 133 461-616 3-139 (140)
35 PRK09982 universal stress prot 98.8 8.8E-09 1.9E-13 98.5 8.8 132 461-615 4-136 (142)
36 COG3004 NhaA Na+/H+ antiporter 98.8 7.5E-07 1.6E-11 92.1 22.8 257 110-406 71-355 (390)
37 PRK10116 universal stress prot 98.7 1.3E-07 2.8E-12 90.2 11.5 135 461-617 4-138 (142)
38 PRK11175 universal stress prot 98.6 1.1E-07 2.4E-12 103.1 8.9 143 460-621 152-303 (305)
39 cd00293 USP_Like Usp: Universa 98.6 3.9E-07 8.4E-12 84.4 11.2 129 462-615 1-129 (130)
40 cd01989 STK_N The N-terminal d 98.3 5.5E-06 1.2E-10 79.3 11.9 135 635-779 1-145 (146)
41 cd01988 Na_H_Antiporter_C The 98.2 1E-05 2.2E-10 75.7 11.7 130 635-778 1-132 (132)
42 PF00582 Usp: Universal stress 98.2 4.2E-06 9E-11 78.3 8.2 132 633-777 2-139 (140)
43 PRK09982 universal stress prot 98.2 5.9E-06 1.3E-10 78.9 8.7 106 633-740 3-113 (142)
44 PRK15005 universal stress prot 98.2 1.3E-05 2.8E-10 76.5 11.0 132 633-777 2-143 (144)
45 COG0589 UspA Universal stress 98.1 2.1E-05 4.5E-10 75.4 10.8 142 461-616 6-150 (154)
46 PRK12460 2-keto-3-deoxyglucona 98.1 0.0011 2.3E-08 70.2 23.1 253 110-438 51-306 (312)
47 cd01987 USP_OKCHK USP domain i 98.0 4E-05 8.6E-10 71.1 9.9 123 635-777 1-123 (124)
48 PRK10116 universal stress prot 97.9 2.6E-05 5.6E-10 74.2 7.6 129 633-778 3-138 (142)
49 PF05684 DUF819: Protein of un 97.9 0.024 5.3E-07 62.9 31.5 307 64-413 24-354 (378)
50 PRK15118 universal stress glob 97.8 6.9E-05 1.5E-09 71.5 9.1 129 633-779 3-139 (144)
51 PRK15456 universal stress prot 97.8 0.00011 2.3E-09 70.1 10.3 133 633-778 2-142 (142)
52 cd00293 USP_Like Usp: Universa 97.7 0.00024 5.1E-09 65.5 9.7 101 635-740 1-103 (130)
53 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.015 3.3E-07 61.3 22.5 171 110-347 51-222 (314)
54 PRK12652 putative monovalent c 97.6 0.00073 1.6E-08 74.1 13.0 131 460-613 5-146 (357)
55 COG0786 GltS Na+/glutamate sym 97.5 0.043 9.3E-07 59.6 24.7 141 244-385 169-342 (404)
56 PF03616 Glt_symporter: Sodium 97.4 0.096 2.1E-06 58.1 26.3 90 292-387 247-342 (368)
57 PRK12652 putative monovalent c 97.3 0.0013 2.8E-08 72.1 10.2 104 632-740 4-123 (357)
58 TIGR00698 conserved hypothetic 97.2 0.4 8.7E-06 52.2 28.6 84 60-152 26-110 (335)
59 COG0798 ACR3 Arsenite efflux p 97.2 0.27 5.8E-06 52.6 25.7 178 68-262 20-202 (342)
60 TIGR00793 kdgT 2-keto-3-deoxyg 97.1 0.02 4.3E-07 60.1 16.1 254 110-437 51-311 (314)
61 COG0385 Predicted Na+-dependen 97.0 0.48 1E-05 50.8 26.2 147 101-262 35-191 (319)
62 PF03390 2HCT: 2-hydroxycarbox 96.8 0.29 6.3E-06 54.3 22.5 282 93-410 77-394 (414)
63 PF03601 Cons_hypoth698: Conse 96.7 0.65 1.4E-05 50.1 24.9 84 62-155 23-108 (305)
64 COG3493 CitS Na+/citrate sympo 96.7 0.18 3.9E-06 54.2 19.8 85 325-411 327-414 (438)
65 TIGR00210 gltS sodium--glutama 96.6 1.6 3.6E-05 48.8 30.8 91 291-384 244-337 (398)
66 PF13593 DUF4137: SBF-like CPA 96.4 1.5 3.2E-05 47.7 25.3 113 103-225 30-147 (313)
67 PRK03562 glutathione-regulated 96.4 0.12 2.5E-06 61.8 17.7 117 273-393 10-127 (621)
68 TIGR00832 acr3 arsenical-resis 96.4 1.3 2.7E-05 48.6 24.4 102 107-220 46-152 (328)
69 PRK05274 2-keto-3-deoxyglucona 96.4 0.23 5E-06 53.9 18.3 45 112-156 55-99 (326)
70 TIGR00932 2a37 transporter, mo 96.1 0.2 4.3E-06 53.4 16.5 129 279-413 3-133 (273)
71 COG0589 UspA Universal stress 96.0 0.077 1.7E-06 50.3 11.7 136 633-779 5-152 (154)
72 PRK03659 glutathione-regulated 95.9 0.26 5.7E-06 58.6 17.9 114 273-390 10-124 (601)
73 PRK10669 putative cation:proto 95.9 0.29 6.2E-06 57.9 17.8 132 275-412 13-145 (558)
74 PRK10490 sensor protein KdpD; 95.7 0.044 9.6E-07 68.2 10.7 123 459-616 249-372 (895)
75 PF03601 Cons_hypoth698: Conse 95.6 0.39 8.5E-06 51.8 15.9 128 275-405 5-138 (305)
76 COG0475 KefB Kef-type K+ trans 95.5 0.45 9.7E-06 53.6 16.9 138 272-417 10-153 (397)
77 TIGR00783 ccs citrate carrier 95.5 0.76 1.6E-05 50.0 17.6 119 291-410 203-327 (347)
78 PF03956 DUF340: Membrane prot 95.5 0.15 3.3E-06 51.0 11.3 128 69-220 2-134 (191)
79 PRK05326 potassium/proton anti 95.3 0.36 7.9E-06 57.0 15.7 119 274-395 12-133 (562)
80 COG3180 AbrB Putative ammonia 95.2 5.7 0.00012 43.2 28.4 299 43-405 8-318 (352)
81 COG2855 Predicted membrane pro 95.2 0.28 6E-06 52.6 12.9 116 285-403 30-145 (334)
82 PF06826 Asp-Al_Ex: Predicted 95.2 0.47 1E-05 46.5 13.6 114 61-190 19-136 (169)
83 PF05145 AmoA: Putative ammoni 95.2 6 0.00013 43.1 27.4 128 273-407 157-287 (318)
84 PF01758 SBF: Sodium Bile acid 95.2 1.8 3.9E-05 43.3 18.2 107 108-225 2-112 (187)
85 PRK03818 putative transporter; 94.8 0.83 1.8E-05 53.6 16.7 105 68-189 33-141 (552)
86 TIGR00698 conserved hypothetic 94.4 1.4 3.1E-05 48.1 16.1 126 276-404 10-143 (335)
87 PLN03159 cation/H(+) antiporte 93.9 1.2 2.6E-05 55.0 16.0 43 630-672 455-499 (832)
88 TIGR00841 bass bile acid trans 93.6 12 0.00026 40.1 27.8 48 107-155 11-62 (286)
89 TIGR00844 c_cpa1 na(+)/h(+) an 93.5 1.7 3.6E-05 52.4 15.6 71 323-395 74-146 (810)
90 TIGR03802 Asp_Ala_antiprt aspa 93.5 0.58 1.3E-05 55.1 11.9 79 48-142 13-96 (562)
91 COG2205 KdpD Osmosensitive K+ 93.4 0.33 7.2E-06 57.5 9.4 121 458-611 246-366 (890)
92 TIGR01625 YidE_YbjL_dupl AspT/ 93.3 0.47 1E-05 45.7 8.9 112 66-191 22-138 (154)
93 PRK04972 putative transporter; 92.9 0.77 1.7E-05 54.0 11.6 117 48-189 19-140 (558)
94 TIGR00831 a_cpa1 Na+/H+ antipo 92.4 1.4 2.9E-05 51.7 12.9 116 276-397 6-124 (525)
95 TIGR00930 2a30 K-Cl cotranspor 92.0 42 0.00091 42.3 41.7 133 458-621 573-710 (953)
96 TIGR03802 Asp_Ala_antiprt aspa 91.4 1.8 3.9E-05 51.0 12.4 116 62-191 412-531 (562)
97 TIGR03082 Gneg_AbrB_dup membra 91.2 11 0.00024 36.5 15.6 122 277-405 4-128 (156)
98 COG2855 Predicted membrane pro 91.0 26 0.00057 37.9 27.1 87 60-156 32-118 (334)
99 PRK10490 sensor protein KdpD; 90.8 1.1 2.3E-05 56.2 10.3 124 632-777 249-372 (895)
100 TIGR03082 Gneg_AbrB_dup membra 90.4 2.1 4.5E-05 41.5 9.8 97 49-159 3-101 (156)
101 COG2985 Predicted permease [Ge 88.4 1.7 3.7E-05 48.6 8.3 78 107-193 62-146 (544)
102 TIGR00210 gltS sodium--glutama 88.2 7.2 0.00016 43.7 13.3 166 44-220 222-393 (398)
103 TIGR00808 malonate_madM malona 87.5 6.4 0.00014 39.0 10.7 101 51-158 23-133 (254)
104 PRK04288 antiholin-like protei 86.2 44 0.00096 34.5 16.9 109 314-435 66-174 (232)
105 PF03547 Mem_trans: Membrane t 86.1 5.1 0.00011 44.8 10.9 137 294-438 8-147 (385)
106 PRK04972 putative transporter; 85.2 8.2 0.00018 45.5 12.3 113 64-190 409-525 (558)
107 TIGR00946 2a69 he Auxin Efflux 83.8 23 0.00049 38.6 14.4 110 63-191 180-290 (321)
108 PRK03818 putative transporter; 83.8 26 0.00057 41.3 15.6 106 68-187 403-513 (552)
109 PF03956 DUF340: Membrane prot 83.6 9.9 0.00021 38.1 10.3 49 353-401 58-106 (191)
110 COG1346 LrgB Putative effector 83.2 58 0.0012 33.3 17.2 111 312-435 61-171 (230)
111 COG3329 Predicted permease [Ge 83.1 34 0.00075 36.3 14.0 120 292-417 16-138 (372)
112 PRK12460 2-keto-3-deoxyglucona 82.9 9.3 0.0002 41.0 10.3 75 68-155 169-243 (312)
113 PRK03359 putative electron tra 81.8 5 0.00011 42.1 7.8 109 638-763 30-149 (256)
114 COG0025 NhaP NhaP-type Na+/H+ 80.0 36 0.00079 38.7 14.6 121 274-397 12-136 (429)
115 cd01984 AANH_like Adenine nucl 79.5 2.1 4.5E-05 36.5 3.5 48 560-613 35-83 (86)
116 COG3263 NhaP-type Na+/H+ and K 78.6 26 0.00056 39.2 12.0 113 284-397 23-136 (574)
117 TIGR02432 lysidine_TilS_N tRNA 77.8 11 0.00025 37.3 8.7 37 635-671 1-37 (189)
118 COG4651 RosB Kef-type K+ trans 77.0 12 0.00027 39.5 8.6 119 273-397 11-132 (408)
119 PRK12342 hypothetical protein; 76.6 5 0.00011 42.1 5.9 95 638-751 29-137 (254)
120 PF05145 AmoA: Putative ammoni 76.6 18 0.0004 39.4 10.5 101 44-158 155-257 (318)
121 PF00999 Na_H_Exchanger: Sodiu 75.9 0.87 1.9E-05 50.9 0.0 113 277-393 5-123 (380)
122 COG2431 Predicted membrane pro 75.9 46 0.00099 35.0 12.3 77 67-156 108-188 (297)
123 PRK09903 putative transporter 75.8 45 0.00098 36.2 13.4 109 63-191 171-280 (314)
124 PRK10711 hypothetical protein; 75.7 1E+02 0.0022 31.8 15.4 105 318-435 65-169 (231)
125 TIGR03136 malonate_biotin Na+- 75.2 7.1 0.00015 42.4 6.5 114 321-442 101-217 (399)
126 PF05982 DUF897: Domain of unk 73.6 18 0.00038 39.1 9.0 74 69-155 184-260 (327)
127 PF03616 Glt_symporter: Sodium 72.8 38 0.00081 37.8 11.9 96 46-148 226-323 (368)
128 COG1346 LrgB Putative effector 71.2 1.3E+02 0.0028 30.9 14.2 42 115-156 75-116 (230)
129 KOG2310 DNA repair exonuclease 70.8 6.2 0.00013 44.8 5.0 83 561-646 40-131 (646)
130 TIGR00659 conserved hypothetic 70.7 1.3E+02 0.0029 30.9 16.7 104 319-435 65-168 (226)
131 COG3180 AbrB Putative ammonia 69.5 63 0.0014 35.4 12.2 99 46-158 190-290 (352)
132 COG2086 FixA Electron transfer 69.4 18 0.00039 38.0 7.9 109 638-765 31-150 (260)
133 COG2205 KdpD Osmosensitive K+ 69.2 24 0.00053 42.5 9.6 127 632-778 247-373 (890)
134 PF02040 ArsB: Arsenical pump 68.6 2.2E+02 0.0047 32.5 22.7 37 181-217 117-153 (423)
135 COG2985 Predicted permease [Ge 67.7 25 0.00053 39.8 8.8 107 67-187 397-507 (544)
136 PF01012 ETF: Electron transfe 67.3 13 0.00028 36.1 6.1 120 644-789 15-145 (164)
137 PF03977 OAD_beta: Na+-transpo 66.5 9.2 0.0002 41.1 5.0 111 323-441 67-179 (360)
138 TIGR01625 YidE_YbjL_dupl AspT/ 66.1 20 0.00044 34.5 7.0 88 294-381 23-116 (154)
139 PF01171 ATP_bind_3: PP-loop f 64.1 17 0.00036 36.0 6.3 57 635-702 1-57 (182)
140 PRK05253 sulfate adenylyltrans 63.0 22 0.00049 38.3 7.4 39 634-672 28-66 (301)
141 cd01992 PP-ATPase N-terminal d 62.6 34 0.00075 33.6 8.3 37 635-671 1-37 (185)
142 COG3969 Predicted phosphoadeno 61.9 17 0.00037 39.1 5.9 39 632-670 26-65 (407)
143 COG0679 Predicted permeases [G 60.1 1.6E+02 0.0035 31.8 13.6 106 293-401 10-117 (311)
144 TIGR02039 CysD sulfate adenyly 59.3 22 0.00048 38.1 6.5 38 635-672 21-58 (294)
145 cd01993 Alpha_ANH_like_II This 58.7 60 0.0013 31.7 9.3 37 635-671 1-39 (185)
146 COG0679 Predicted permeases [G 57.7 2.8E+02 0.006 30.0 31.1 139 291-435 166-306 (311)
147 PRK12563 sulfate adenylyltrans 56.4 22 0.00047 38.5 5.8 39 634-672 38-76 (312)
148 cd01984 AANH_like Adenine nucl 56.0 12 0.00027 31.6 3.3 33 636-669 1-33 (86)
149 TIGR00946 2a69 he Auxin Efflux 54.4 3.1E+02 0.0068 29.6 28.0 136 292-435 181-319 (321)
150 PF13593 DUF4137: SBF-like CPA 54.3 1.6E+02 0.0035 32.0 12.2 91 294-387 6-97 (313)
151 COG0786 GltS Na+/glutamate sym 53.7 88 0.0019 34.7 9.8 94 44-144 225-320 (404)
152 PRK04125 murein hydrolase regu 52.7 1.6E+02 0.0035 28.0 10.2 45 328-373 69-115 (141)
153 TIGR03136 malonate_biotin Na+- 51.7 3.7E+02 0.008 29.7 21.6 75 272-350 232-306 (399)
154 PRK10660 tilS tRNA(Ile)-lysidi 49.2 90 0.002 35.6 9.7 59 633-702 15-74 (436)
155 TIGR02185 Trep_Strep conserved 47.6 3E+02 0.0065 27.4 14.6 25 353-377 161-185 (189)
156 TIGR00783 ccs citrate carrier 47.0 1.7E+02 0.0036 32.3 10.7 90 57-156 195-291 (347)
157 PF03652 UPF0081: Uncharacteri 45.4 64 0.0014 30.3 6.5 60 559-621 37-97 (135)
158 KOG1650 Predicted K+/H+-antipo 45.4 2.7E+02 0.0059 34.3 13.5 66 107-180 313-378 (769)
159 PF09605 Trep_Strep: Hypotheti 44.1 3.4E+02 0.0073 27.0 14.8 128 244-376 37-181 (186)
160 PF13194 DUF4010: Domain of un 42.7 3.8E+02 0.0083 27.3 14.9 28 277-304 136-164 (211)
161 COG2035 Predicted membrane pro 42.5 4.4E+02 0.0096 27.9 16.9 46 39-86 59-106 (276)
162 PF03547 Mem_trans: Membrane t 42.1 5.2E+02 0.011 28.6 22.7 87 293-380 244-335 (385)
163 PRK06806 fructose-bisphosphate 41.8 1.3E+02 0.0028 32.2 8.9 114 542-663 13-130 (281)
164 KOG1288 Amino acid transporter 41.7 7.1E+02 0.015 30.1 21.9 97 462-584 562-663 (945)
165 PF05684 DUF819: Protein of un 40.2 4E+02 0.0086 29.8 12.8 95 321-420 54-152 (378)
166 PF02844 GARS_N: Phosphoribosy 39.8 55 0.0012 29.1 4.7 79 635-750 2-80 (100)
167 PF03977 OAD_beta: Na+-transpo 39.6 5.4E+02 0.012 28.1 24.7 87 45-134 4-96 (360)
168 PF03812 KdgT: 2-keto-3-deoxyg 39.2 1E+02 0.0022 33.2 7.4 73 69-154 175-247 (314)
169 TIGR00840 b_cpa1 sodium/hydrog 39.0 5.5E+02 0.012 30.4 14.4 72 325-398 70-150 (559)
170 PF04172 LrgB: LrgB-like famil 38.7 4.5E+02 0.0097 26.9 17.7 82 349-434 76-157 (215)
171 cd01118 ArsB_permease Anion pe 38.7 6.1E+02 0.013 28.4 22.3 24 55-78 10-33 (416)
172 PRK15475 oxaloacetate decarbox 37.8 67 0.0015 35.2 5.8 131 322-457 131-265 (433)
173 cd01713 PAPS_reductase This do 37.5 57 0.0012 31.1 5.1 36 635-671 1-36 (173)
174 PRK15476 oxaloacetate decarbox 37.2 69 0.0015 35.1 5.8 131 322-457 131-265 (433)
175 PRK15477 oxaloacetate decarbox 37.1 70 0.0015 35.0 5.8 131 322-457 131-265 (433)
176 PRK04288 antiholin-like protei 36.7 5E+02 0.011 26.9 14.3 36 121-156 84-119 (232)
177 PF06181 DUF989: Protein of un 36.3 5.6E+02 0.012 27.4 13.6 39 325-364 230-268 (300)
178 COG1646 Predicted phosphate-bi 36.1 1.1E+02 0.0023 31.6 6.7 62 548-617 15-77 (240)
179 PRK04125 murein hydrolase regu 35.7 3.6E+02 0.0078 25.6 9.7 98 40-147 7-108 (141)
180 PF06826 Asp-Al_Ex: Predicted 35.6 4.3E+02 0.0094 25.9 11.2 88 291-381 22-115 (169)
181 TIGR00793 kdgT 2-keto-3-deoxyg 35.2 2.1E+02 0.0045 30.8 8.8 73 69-155 175-248 (314)
182 COG5505 Predicted integral mem 35.2 6.1E+02 0.013 27.4 27.2 82 325-410 276-357 (384)
183 PRK00109 Holliday junction res 32.4 85 0.0019 29.6 5.1 58 561-621 42-99 (138)
184 TIGR00342 thiazole biosynthesi 31.8 1.2E+02 0.0026 33.9 7.0 38 630-671 169-206 (371)
185 PF01507 PAPS_reduct: Phosphoa 31.5 82 0.0018 30.3 5.2 32 635-670 1-32 (174)
186 COG0037 MesJ tRNA(Ile)-lysidin 31.5 1.6E+02 0.0036 31.3 8.0 56 634-702 22-77 (298)
187 PF03600 CitMHS: Citrate trans 30.2 7.4E+02 0.016 26.9 16.4 17 182-198 118-134 (351)
188 PRK01821 hypothetical protein; 29.7 4.8E+02 0.01 24.5 10.6 102 272-376 14-120 (133)
189 TIGR00841 bass bile acid trans 29.3 5.2E+02 0.011 27.5 11.2 105 328-436 14-120 (286)
190 PF01032 FecCD: FecCD transpor 28.3 7.9E+02 0.017 26.6 13.2 61 56-117 34-94 (311)
191 COG3748 Predicted membrane pro 28.0 5.1E+02 0.011 28.1 10.1 53 310-364 213-265 (407)
192 TIGR02057 PAPS_reductase phosp 27.8 2.8E+02 0.0061 28.5 8.5 36 634-672 26-61 (226)
193 PF03686 UPF0146: Uncharacteri 27.7 99 0.0021 28.7 4.4 36 550-585 72-107 (127)
194 PRK01663 C4-dicarboxylate tran 27.4 9.6E+02 0.021 27.3 15.0 36 122-157 66-101 (428)
195 KOG2718 Na+-bile acid cotransp 27.2 3.2E+02 0.0068 30.4 9.0 32 108-139 117-148 (371)
196 PRK12857 fructose-1,6-bisphosp 26.2 2.2E+02 0.0047 30.5 7.5 73 543-622 14-86 (284)
197 PRK12737 gatY tagatose-bisphos 26.0 2.2E+02 0.0049 30.4 7.5 74 542-622 13-86 (284)
198 TIGR01109 Na_pump_decarbB sodi 25.9 8.9E+02 0.019 26.4 18.7 75 272-349 194-268 (354)
199 KOG0573 Asparagine synthase [A 25.8 3.7E+02 0.0081 30.5 9.1 100 599-716 226-328 (520)
200 TIGR01109 Na_pump_decarbB sodi 25.7 85 0.0018 33.9 4.1 113 321-441 59-179 (354)
201 TIGR02230 ATPase_gene1 F0F1-AT 25.6 2E+02 0.0044 25.6 5.8 39 140-178 51-89 (100)
202 KOG1965 Sodium/hydrogen exchan 25.4 2.5E+02 0.0055 32.8 8.2 69 325-397 103-180 (575)
203 TIGR01858 tag_bisphos_ald clas 25.3 2.3E+02 0.0051 30.2 7.5 74 542-622 11-84 (282)
204 COG1902 NemA NADH:flavin oxido 24.5 4.6E+02 0.0099 29.2 9.8 224 465-740 74-321 (363)
205 PRK10696 tRNA 2-thiocytidine b 24.4 2.2E+02 0.0048 29.8 7.2 39 633-671 29-69 (258)
206 PRK09535 btuC corrinoid ABC tr 24.1 1E+03 0.022 26.5 16.0 24 59-82 90-113 (366)
207 COG0816 Predicted endonuclease 23.9 1.8E+02 0.0038 27.7 5.5 56 561-619 41-96 (141)
208 PRK06801 hypothetical protein; 23.6 3.6E+02 0.0077 28.9 8.5 114 542-664 13-131 (286)
209 COG0175 CysH 3'-phosphoadenosi 23.5 2.2E+02 0.0048 30.0 6.9 33 635-671 41-73 (261)
210 TIGR00250 RNAse_H_YqgF RNAse H 23.5 1.8E+02 0.0038 27.2 5.5 60 559-621 34-93 (130)
211 TIGR02359 thiW thiW protein. L 23.5 6.9E+02 0.015 24.3 11.3 48 67-119 34-84 (160)
212 TIGR00659 conserved hypothetic 23.3 8.3E+02 0.018 25.2 13.7 36 121-156 78-113 (226)
213 cd04734 OYE_like_3_FMN Old yel 22.9 5.1E+02 0.011 28.4 9.9 131 589-740 185-318 (343)
214 PRK01658 holin-like protein; V 22.9 6.1E+02 0.013 23.4 9.8 107 272-381 9-120 (122)
215 TIGR01520 FruBisAldo_II_A fruc 22.9 2.9E+02 0.0062 30.6 7.6 89 531-622 12-111 (357)
216 PRK10711 hypothetical protein; 22.8 8.6E+02 0.019 25.2 13.6 36 121-156 79-114 (231)
217 PF08659 KR: KR domain; Inter 22.5 4.1E+02 0.009 25.9 8.3 84 639-740 4-91 (181)
218 PF10136 SpecificRecomb: Site- 22.3 5.4E+02 0.012 30.9 10.4 91 29-127 460-562 (643)
219 COG1301 GltP Na+/H+-dicarboxyl 22.0 1.2E+03 0.026 26.5 16.7 91 122-224 67-157 (415)
220 PF02601 Exonuc_VII_L: Exonucl 21.8 1.6E+02 0.0034 32.0 5.6 48 692-740 29-85 (319)
221 cd06278 PBP1_LacI_like_2 Ligan 21.8 8.4E+02 0.018 24.6 11.3 109 529-668 12-122 (266)
222 PRK04148 hypothetical protein; 21.8 1.3E+02 0.0029 28.2 4.2 34 552-585 81-114 (134)
223 KOG3180 Electron transfer flav 21.7 2.9E+02 0.0063 27.6 6.6 92 643-753 39-144 (254)
224 cd01995 ExsB ExsB is a transcr 21.6 4.3E+02 0.0092 25.4 8.2 32 635-670 1-32 (169)
225 cd01985 ETF The electron trans 20.6 4.6E+02 0.0099 25.6 8.2 28 642-670 17-44 (181)
226 PRK08185 hypothetical protein; 20.3 2.9E+02 0.0063 29.5 7.0 113 542-664 8-125 (283)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.5e-150 Score=1345.06 Aligned_cols=769 Identities=52% Similarity=0.914 Sum_probs=694.4
Q ss_pred cccccccCC-CCCCCCCCCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCC
Q 003645 7 GSLMASVGH-ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGR 85 (805)
Q Consensus 7 ~~~~~~~~~-~c~~~~~~~s~g~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~ 85 (805)
|-..+.+.. +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.
T Consensus 8 ~~~~~~~~~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~ 87 (832)
T PLN03159 8 GKNPSTASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQ 87 (832)
T ss_pred CCCCCCCCCcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCc
Confidence 333333333 6997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q 003645 86 SERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDS 165 (805)
Q Consensus 86 ~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~ 165 (805)
+..+.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. .......
T Consensus 88 i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~ 166 (832)
T PLN03159 88 SEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQ 166 (832)
T ss_pred ChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccch
Confidence 988889999988888999999999999999999999999999999999999999999999999988877743 2111222
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 003645 166 TSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVI 245 (805)
Q Consensus 166 ~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (805)
....+++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++
T Consensus 167 ~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~ 246 (832)
T PLN03159 167 GTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVL 246 (832)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999887665443333445677777778888
Q ss_pred HHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHH
Q 003645 246 CLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSG 325 (805)
Q Consensus 246 ~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~ 325 (805)
++.+++||++.|+.++++++++.++.+++++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|+++++++
T Consensus 247 ~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~ 325 (832)
T PLN03159 247 FCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSG 325 (832)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHH
Confidence 88999999999999999988888999999999999999999999999999999999999995 78999999999999999
Q ss_pred HHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645 326 IFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 405 (805)
Q Consensus 326 ~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~ 405 (805)
+|+|+||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++
T Consensus 326 lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~ 405 (832)
T PLN03159 326 LLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRD 405 (832)
T ss_pred HHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999999999999998886544566666777888999999999999999999999999999999999999999999999
Q ss_pred CCccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHHHhcc
Q 003645 406 RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRG 485 (805)
Q Consensus 406 ~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~ 485 (805)
.|+++++.|++++++++++|.+++|++.++|+|+||+. .|++|++|+.++++|+|+|+|+|++++++++++|++++++
T Consensus 406 ~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~ 483 (832)
T PLN03159 406 QEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHP 483 (832)
T ss_pred cCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc-cCeEEEEeEEecCCCChHHH
Q 003645 486 IQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHED 564 (805)
Q Consensus 486 ~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~~~~d 564 (805)
+ +++|+++|++||||+++|++|++++|+.+++..+..++ +..++|+++++|++|+++ ++++|+++|++|||++||+|
T Consensus 484 t-~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~d 561 (832)
T PLN03159 484 T-KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHED 561 (832)
T ss_pred C-CCCCceEEEEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHH
Confidence 9 89999999999999999999999999865443321111 125589999999999976 58999999999999999999
Q ss_pred HHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCc
Q 003645 565 ICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGR 644 (805)
Q Consensus 565 I~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ 644 (805)
||++|+|+++++||+||||+|+.||++++.+..+|.+|+|||++||||||||||||.++..+....+..+||+++|+|||
T Consensus 562 Ic~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~ 641 (832)
T PLN03159 562 VCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGP 641 (832)
T ss_pred HHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999764433344456789999999999
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc------------cc--cCCcCccccHHHHHHHHHhhcCCCCCeEE
Q 003645 645 DDREALACGARMAEHPGISFIVIRFLLAADAIGNT------------VS--VDMAGNASMDEEVLSEFKLKTSRNGSVRY 710 (805)
Q Consensus 645 ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~------------~~--~~~~~~~~~d~~~l~e~~~~~~~~~~v~~ 710 (805)
||||||+||+|||+||++++||+||++.++...+. +. .+++.|+++||++++|||.++..++++.|
T Consensus 642 DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y 721 (832)
T PLN03159 642 DDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVY 721 (832)
T ss_pred chHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEE
Confidence 99999999999999999999999999754322100 00 02356788999999999999988899999
Q ss_pred EEEEecChHHHHHHHHhccC-CCEEEEccCC--CchhccccccCCCCCccccchhhhccCCCCc-eeEEEEEeec
Q 003645 711 EERLVRNTAETIAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 781 (805)
Q Consensus 711 ~e~~v~~~~e~~~~i~~~~~-~DLiiVGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~ 781 (805)
+||+|+|++||++++|++++ |||+||||+| +|++++||+||+||||||+|||+|||+||++ +||||||||+
T Consensus 722 ~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 722 TEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred EEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 99999999999999999998 9999999998 5999999999999999999999999999999 9999999998
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-122 Score=1083.42 Aligned_cols=753 Identities=50% Similarity=0.802 Sum_probs=682.5
Q ss_pred CCCCCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcH
Q 003645 20 PMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ 99 (805)
Q Consensus 20 ~~~~~s~g~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~ 99 (805)
+++.++.|+|.|+||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|++..+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-Cc---hhHHHHHHHHH
Q 003645 100 TVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKG-VD---STSFLVFMGVA 175 (805)
Q Consensus 100 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~-~~---~~~~~l~lg~~ 175 (805)
..+++++++|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|..+...+....... +. ...+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887775433211 11 11256788899
Q ss_pred HhhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHHHhhHHH
Q 003645 176 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ-SSLVPVWVFLSGCVFVICLTLFVPPT 254 (805)
Q Consensus 176 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~ 254 (805)
+|.|+||+++++|.|+|++++++||+++++++++|+.+|.++.+..++..... ++....|.+...+++++++.++++|.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 99999999999999999999999999999999999999999888777665443 34556888888899999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHH
Q 003645 255 FKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIG-IHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV 333 (805)
Q Consensus 255 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g-~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~ 333 (805)
+.|+.+|+|++++.++.+...++..+++++.+++.++ .|+++|||+.|+++|+++|+++++.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhH
Q 003645 334 SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 413 (805)
Q Consensus 334 ~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~ 413 (805)
..|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+++..++.+.+.++++++.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999988874 7777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHHHhccCCCCCCce
Q 003645 414 FAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 493 (805)
Q Consensus 414 ~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~ 493 (805)
|++++++++++|.+++|++..+|+|.+++. .|++|++|+.++++++|++.|+|+++++++++++++++.++ +++|+.
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~--~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~-~~~p~~ 475 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYH--GYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS-LESPLS 475 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcC--ceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC-CCCCcc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999988 666999
Q ss_pred EEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc--cCeEEEEeEEecCCCChHHHHHHHHHh
Q 003645 494 VYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL--SRVSVRPMTAISSMSDMHEDICTTAES 571 (805)
Q Consensus 494 v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~~~~~dI~~~A~e 571 (805)
+|++|+||+.+|+.|++++|+.++++... .+...++++..+|+.|++. .++.++++|+++|+.+||||||.+|.+
T Consensus 476 v~~lhlveL~~~~~~~li~h~~~~~~~~~---~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 476 VYALHLVELVGRATPLLISHKLRKNGRVE---SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred eeeeeeeecccccchhhhhhhhccccccc---cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 99999999999999999999876653221 1124567999999999984 679999999999999999999999999
Q ss_pred cCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHH
Q 003645 572 KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALA 651 (805)
Q Consensus 572 ~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~ 651 (805)
+++++|++||||+|+.++.+++.+..+|++|++|+++||||||||||||.......+.....++|+++|+||+||||||+
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa 632 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALA 632 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHH
Confidence 99999999999999966689999999999999999999999999999982211111223367899999999999999999
Q ss_pred HHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHH-HhhcCCCCCeEEE-EEEecChHHHHHHHHhcc
Q 003645 652 CGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF-KLKTSRNGSVRYE-ERLVRNTAETIAVIREVS 729 (805)
Q Consensus 652 ~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~-~~~~~~~~~v~~~-e~~v~~~~e~~~~i~~~~ 729 (805)
+++||++||++++||+||.++++.... ....++++.+|++..+++ +..+..+.++.|. ||.+.++.||.+++++++
T Consensus 633 ~~~rm~~~~~v~lTVirf~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 633 LAKRMAENPRVTLTVIRFFPDESKYNR--KVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred HHHHHhhCCceEEEEEEeeccchhhcc--cccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 999999999999999999986543300 002467788888888888 6555556678888 699999999999999998
Q ss_pred C-CCEEEEccCC--CchhccccccCCCCCccccchhhhccCCCCc-eeEEEEEeeccc
Q 003645 730 R-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDR 783 (805)
Q Consensus 730 ~-~DLiiVGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~~~ 783 (805)
+ |||++|||++ +++.++|++||+||||||+|||.|+|+||.+ +||||+|||...
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 8 9999999998 8999999999999999999999999999988 999999999754
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3.6e-46 Score=436.15 Aligned_cols=410 Identities=20% Similarity=0.324 Sum_probs=326.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003645 41 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 120 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 120 (805)
.+++++.+++.++.++..++||+|+|+++|||++|+++||+++|.+. ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999764 24568899999999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 200 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 200 (805)
+|++.+|+.+|+++.++..++++|+++++.++++++. +| ..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~----~~---~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL----RW---QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999888777666542 22 5688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ChhHHH-HHHHHH----HHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003645 201 MAMSAAAVNDVAAWILLALAVALSGSGQS-SLVPVW-VFLSGC----VFVICLTLFVPPTFKWMARQCHEGEPVEETYVC 274 (805)
Q Consensus 201 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~-~~~~~~-~~~~~i----~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 274 (805)
.+++.++++|+.+|++++++..+...+.. .....| ..+..+ +++++..++.+|+++|+.++ ..+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHH
Confidence 99999999999999999877655432211 112222 222222 22223344555666555443 24678888
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHH
Q 003645 275 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 354 (805)
Q Consensus 275 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~ 354 (805)
.+++++++++++++.+|+|+++|||++|+++++ .++++++.++++++. ++|+|+||+++|+++|+..+.. .|..++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~--~~~~il 298 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLE--NPLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence 889999999999999999999999999999994 789999999999995 9999999999999999987763 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHH
Q 003645 355 LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 434 (805)
Q Consensus 355 ~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~ 434 (805)
.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~ 377 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLV 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566788999999999999999999999999999999999999999999999999999999998755 557777777777
Q ss_pred HhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHH
Q 003645 435 VYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLE 481 (805)
Q Consensus 435 l~~~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~l~~ 481 (805)
+|++..... ..+.+. ++..++.+.++++|-++.- ...+.+.++
T Consensus 378 ~~~~~~~~~--~~~~~~-~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (621)
T PRK03562 378 LLDRLEQSR--TEEARE-ADEIDEQQPRVIIAGFGRF-GQIVGRLLL 420 (621)
T ss_pred hhhHHHHHH--hhhccc-ccccccccCcEEEEecChH-HHHHHHHHH
Confidence 665532111 001111 1111223568888888665 233334443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=9.3e-46 Score=431.56 Aligned_cols=373 Identities=22% Similarity=0.300 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 003645 43 ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 122 (805)
Q Consensus 43 l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d 122 (805)
+..+.++++++.+++.++||+|+|++++||++|+++||+++|... ..+.++.++++|++++||.+|+|+|
T Consensus 8 ~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 8 ITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 456688889999999999999999999999999999999998753 2357889999999999999999999
Q ss_pred chhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHH
Q 003645 123 PKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMA 202 (805)
Q Consensus 123 ~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ 202 (805)
++.+|+.++..+..++.++++|+++++++++.++. .. ..++.+|+++|.||++++.++++|+|+++++.||++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW------SL-MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC------CH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999998887777888888898888877665542 22 567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---CCCCh-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003645 203 MSAAAVNDVAAWILLALAVALSGS---GQSSL-----VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVC 274 (805)
Q Consensus 203 ls~a~i~D~~~~~ll~i~~~~~~~---~~~~~-----~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 274 (805)
+++++++|+.+|+++.+...+... +.... ...+.++..++++++..++.|++..|+.++.++.+ .+|.+..
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l 229 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTL 229 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHH
Confidence 999999999999888876554321 11111 11234455566777778889999999999987654 6788888
Q ss_pred HHHHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHH
Q 003645 275 ATLAAVLAAGFI-TDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 353 (805)
Q Consensus 275 ~~l~~~l~~~~~-ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~ 353 (805)
.++++++++++. ++.+|+|+++|||++|+++|+ .+.++++.+...++ .++|+|+||+++|+++|+..+.+ .+...
T Consensus 230 ~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~ 305 (558)
T PRK10669 230 SVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAV 305 (558)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHH
Confidence 888888887764 699999999999999999994 67888888877776 48899999999999999987753 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHH
Q 003645 354 ALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM 433 (805)
Q Consensus 354 ~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~ 433 (805)
..++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|.+.+
T Consensus 306 ~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~ 385 (558)
T PRK10669 306 LATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFT 385 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999998888877777666666
Q ss_pred HHhc
Q 003645 434 AVYK 437 (805)
Q Consensus 434 ~l~~ 437 (805)
+..+
T Consensus 386 ~~~~ 389 (558)
T PRK10669 386 LLER 389 (558)
T ss_pred HhhH
Confidence 6544
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=6.6e-45 Score=424.97 Aligned_cols=411 Identities=21% Similarity=0.330 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003645 41 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 120 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 120 (805)
.++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|.++ ..+.+..++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999999999999764 23457899999999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 200 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 200 (805)
+|++.+|+.+|+++.++..++++|+++++.+.++++. + +..++++|++++.||++++.++|+|+|+.+++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~----~---~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF----S---WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 9999999999999999999999998777665544421 2 25688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003645 201 MAMSAAAVNDVAAWILLALAVALSGSGQSSLVPV---WVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATL 277 (805)
Q Consensus 201 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 277 (805)
++++..+++|+.+++++++...+........... +.++..++++++..++.+|+.+|+.+. +.+|.++..++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l 222 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAAL 222 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHH
Confidence 9999999999999999887765543322211111 111112222222334455555554332 35688889999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHH
Q 003645 278 AAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 357 (805)
Q Consensus 278 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~ 357 (805)
+++++++++++.+|+|+++|||++|+++++ .++++++.++++++. ++|+|+||+++|+++|+..+.+ .|..++.++
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~--~~~~il~~~ 298 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYT--HLLWVLISV 298 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHH--hHHHHHHHH
Confidence 999999999999999999999999999995 789999999999995 9999999999999999987764 344555666
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHHhc
Q 003645 358 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 437 (805)
Q Consensus 358 ~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~ 437 (805)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++ +.|++.+|++...++
T Consensus 299 ~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v-~ls~~~tP~l~~~~~ 377 (601)
T PRK03659 299 VVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVV-TLSMMTTPLLMKLID 377 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHhH
Confidence 7788999999999999999999999999999999999999999999999999999999996655 455677888877776
Q ss_pred h--hhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHH
Q 003645 438 P--ARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLE 481 (805)
Q Consensus 438 ~--~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~l~~ 481 (805)
| .+++.. ..+.+..+ ...+.+.++++|-++.- ...+.+.+.
T Consensus 378 ~~~~~~~~~-~~~~~~~~-~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (601)
T PRK03659 378 KWLARRLNG-PEEEDEKP-WVEDDKPQVIIVGFGRF-GQVIGRLLM 420 (601)
T ss_pred HHHHHhhcc-cccccccc-ccccccCCEEEecCchH-HHHHHHHHH
Confidence 5 233220 10111111 11123568888887654 233334443
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-44 Score=395.84 Aligned_cols=377 Identities=28% Similarity=0.526 Sum_probs=317.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003645 41 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 120 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 120 (805)
..+.|+.++++++.+.+.+++|+|+|+++||+++|+++||.+++.. .+..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 5688999999999999999999999999999999999999555433 3567889999999999999999999
Q ss_pred cCchhHHhcchh-HHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCch
Q 003645 121 LDPKSLRQTGKK-ALGIAIAGISLPFALGIGSSFL-LRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 198 (805)
Q Consensus 121 ~d~~~l~~~~~~-~~~ia~~~~~ip~~~~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 198 (805)
+|++.+||++|+ ....+..++..|++++....+. ++. ++ ..++++|.+++.||.++++++++|+|+.+++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----SL---IAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----Ch---HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888888644443 222 22 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003645 199 GRMAMSAAAVNDVAAWILLALAVALSGSGQSSLV-PVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATL 277 (805)
Q Consensus 199 g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 277 (805)
|++++++++++|+.++++++++..+..++..... .+...+...++.++..+..+++.+|+.|+..+. +.+|..+.+++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999998887665433222 233344445555555555677777777776432 36788999999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch-HHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHH
Q 003645 278 AAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV 356 (805)
Q Consensus 278 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~-~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i 356 (805)
++++.+++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|++.+.+ .+..+..+
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~ 305 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHH
Confidence 999999999999999999999999999994 5566 7999999999988999999999999999998875 34446677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHHh
Q 003645 357 ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 436 (805)
Q Consensus 357 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~ 436 (805)
+.+..++|.+++++.++..|.+.|++...|+.+.++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++...++
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~ 384 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILL 384 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998887 577888888887777777666666666655
Q ss_pred ch
Q 003645 437 KP 438 (805)
Q Consensus 437 ~~ 438 (805)
++
T Consensus 385 ~~ 386 (397)
T COG0475 385 KR 386 (397)
T ss_pred HH
Confidence 43
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.2e-39 Score=379.91 Aligned_cols=380 Identities=18% Similarity=0.194 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003645 40 PLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 119 (805)
Q Consensus 40 ~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 119 (805)
-.++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.+. .++.+..+.++++|++++||..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCcc
Confidence 357889999999999999999999999999999999999999999653 134567899999999999999999
Q ss_pred ccCchhHHhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCc-cCCc
Q 003645 120 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSS-FLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL-LTAD 197 (805)
Q Consensus 120 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-~~s~ 197 (805)
|+|++.+|+++++++.+++.++++|++++...+ +++.. + +..++++|+++++||++++.++++|.|+ ++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~----~---~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL----D---WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C---HHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 999999999999999999999999987754333 33322 2 2678999999999999999999999996 8999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003645 198 VGRMAMSAAAVNDVAAWILLALAVALSGSGQS--SLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCA 275 (805)
Q Consensus 198 ~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 275 (805)
+++++.++|.+||.++++++.+...+...+.. .+..++.++..+++.++.+++.++++.|+.+|... ..++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHH
Confidence 99999999999999999988877766544332 12223445556667777788889999999988732 134567888
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHH
Q 003645 276 TLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLAL 355 (805)
Q Consensus 276 ~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~ 355 (805)
++++++++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+.+ ..+..+++
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i 306 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999997665555556666666678999999999999999987763 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccCh-hHHHHHHHHHHHHHHhhHHHHHH
Q 003645 356 VILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND-QVFAIMILMAVVTTFMTTPLVMA 434 (805)
Q Consensus 356 i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~-~~~~~~vl~~lv~t~i~~plv~~ 434 (805)
.+++.+++|++++++..+.+++++||+.+++| .++||.++++++..+...++.+. ..|+++.+++++++.+.++.+..
T Consensus 307 ~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 307 ALFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 44567889999999999999999999999999 58999999999999998888864 56777777777777777777766
Q ss_pred Hhch
Q 003645 435 VYKP 438 (805)
Q Consensus 435 l~~~ 438 (805)
+.++
T Consensus 386 ~a~~ 389 (562)
T PRK05326 386 AARK 389 (562)
T ss_pred HHHH
Confidence 5543
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.3e-34 Score=308.39 Aligned_cols=270 Identities=27% Similarity=0.459 Sum_probs=230.1
Q ss_pred HHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcc
Q 003645 51 LLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTG 130 (805)
Q Consensus 51 ~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~ 130 (805)
+++.+.+.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4577889999999999999999999999999998754 235799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHHHH
Q 003645 131 KKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVN 209 (805)
Q Consensus 131 ~~~~~ia~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~ 209 (805)
|++..+++.++++| +.+++.+++++... +..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 67777666655321 25789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Q 003645 210 DVAAWILLALAVALSGSGQSSL-VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITD 288 (805)
Q Consensus 210 D~~~~~ll~i~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae 288 (805)
|+++++++.+......+..... ...+.+...++..++.+++.++...|+.++.++.+ ..|.+..+++.+++..++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence 9999999988876654322111 22333444445555666778888999998887654 357888899999999999999
Q ss_pred HhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 003645 289 AIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTN 340 (805)
Q Consensus 289 ~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~d 340 (805)
.+|.|+++|||++|+++++ .+.++++.++++++. ++|.|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999996 556788999999999 9999999999999986
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.3e-39 Score=360.84 Aligned_cols=372 Identities=31% Similarity=0.562 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh
Q 003645 49 VILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ 128 (805)
Q Consensus 49 il~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~ 128 (805)
+++.+.+.+.++||+++|.+++|+++|+++||.+++..+ |. ...++.++++|+.++||.+|+|+|.+.+||
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 444566667789999999999999999999999888543 11 366889999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHH
Q 003645 129 TGKKALGIAIAGISLPFAL-GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAA 207 (805)
Q Consensus 129 ~~~~~~~ia~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~ 207 (805)
++|+++.+++.++.+|++. ++.+++++. . .+++. ..++++|.+++.||++++.++++|.+..+++.+++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 150 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLF-I--LGLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESV 150 (380)
T ss_dssp -------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhc-c--chhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhch
Confidence 9999999999999999888 766664321 1 12222 57899999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHH
Q 003645 208 VNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG-EPVEETYVCATLAAVLAAGFI 286 (805)
Q Consensus 208 i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l~~~l~~~~~ 286 (805)
+||+++++++.+.......+ . ....+.....++..+....+.+....|+.++..+. ++.++.+..++++.++.++++
T Consensus 151 i~d~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (380)
T PF00999_consen 151 INDIIAIILLSILISLAQAS-G-QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGL 228 (380)
T ss_dssp TTTTTTTTTT----------------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhhhccc-c-cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccc
Confidence 99999999998877765211 1 11222222222222333333344444444443222 246788899999999999999
Q ss_pred HHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHHHHH
Q 003645 287 TDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQ-GLQSWGLLALVILTACLGKI 365 (805)
Q Consensus 287 ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~-~~~~~~~~~~i~~~~~~~K~ 365 (805)
+|.+|.|+++|+|++|++++ +.+.++++.++++++.++++.|+||+++|+++|++.+. +...+.....+++..+++|+
T Consensus 229 a~~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 307 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKF 307 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 99999999999999999999 67788889999999999999999999999999988774 22455556666777779999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHHh
Q 003645 366 VGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 436 (805)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~ 436 (805)
+++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.++.++.++++++.+.++.++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 308 IGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ---------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred ceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998888887777777666554
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-33 Score=278.54 Aligned_cols=382 Identities=26% Similarity=0.385 Sum_probs=308.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHH
Q 003645 36 DFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMF 115 (805)
Q Consensus 36 ~~~~~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF 115 (805)
+++.|++ -.+..-+.++++++.+..|+|+|+.+||+++|++.||..-|... +......++++|.+++||
T Consensus 2 ~h~tpli-~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmF 70 (408)
T COG4651 2 HHDTPLI-TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMF 70 (408)
T ss_pred CCCchHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHH
Confidence 4555554 33445567788999999999999999999999999998777653 334556899999999999
Q ss_pred HHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccC
Q 003645 116 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLT 195 (805)
Q Consensus 116 ~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~ 195 (805)
-+|++.+.+++...+.-++--++.++.+....+..+.+.++..+ ...+.+|.++|..|..+..|.++|.++.+
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lid 143 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLID 143 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhcccc
Confidence 99999999999877765655566666666666666666664432 34678999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCh-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCC
Q 003645 196 ADVGRMAMSAAAVNDVAAWILLALAVALSGS---GQSSL-----VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEP 267 (805)
Q Consensus 196 s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~---~~~~~-----~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~ 267 (805)
++.||++++--+++|+..++.+....++++. ..... ...+.......|..++.++.|+...|+..+.....
T Consensus 144 t~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG- 222 (408)
T COG4651 144 TQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG- 222 (408)
T ss_pred ccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 9999999999999999998888776655432 11111 11234557788999999999999999999874332
Q ss_pred cchHHHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccc
Q 003645 268 VEETYVCATLAAVLAAGF-ITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQG 346 (805)
Q Consensus 268 ~~e~~~~~~l~~~l~~~~-~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~ 346 (805)
.+|.+...++++++..++ .++.+|+++.+|||++|+++. +++..++..+..-+.. +.|.-+||+++||..|+..+.+
T Consensus 223 srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~~ 300 (408)
T COG4651 223 SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILIQ 300 (408)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhhc
Confidence 578888899999988776 667899999999999999998 6888888888888875 7888899999999999987764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHH
Q 003645 347 LQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTF 426 (805)
Q Consensus 347 ~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~ 426 (805)
+.+. +...++..+.+|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.++++ +...-++++.-+.++
T Consensus 301 -~pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp-~~gr~LvlagailsI 377 (408)
T COG4651 301 -QPLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLP-EAGRDLVLAGAILSI 377 (408)
T ss_pred -chHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCc-HHHHHHHHHHHHHHH
Confidence 3443 3445667788999999999999999999999999999999999999999999999998 455555577777788
Q ss_pred hhHHHHHHHhchhhh
Q 003645 427 MTTPLVMAVYKPARR 441 (805)
Q Consensus 427 i~~plv~~l~~~~~~ 441 (805)
+..|+.....++.++
T Consensus 378 l~nPllf~~~dr~~~ 392 (408)
T COG4651 378 LLNPLLFALLDRYQR 392 (408)
T ss_pred HHhHHHHHHHHHHhh
Confidence 889988776654443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=9.9e-28 Score=276.02 Aligned_cols=367 Identities=15% Similarity=0.191 Sum_probs=266.2
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHH
Q 003645 29 FQGDSPLDFALPLAILQICLVILLTRGLAFILR-PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLAN 107 (805)
Q Consensus 29 ~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~-~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~ 107 (805)
|..-++-+.++. +..++..+++..++..+++ |+.+|..+.++++|+++||.++|.+.+.. + .......++ +++
T Consensus 3 w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-Ite 76 (810)
T TIGR00844 3 WEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISR 76 (810)
T ss_pred cccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HHH
Confidence 554445444433 3333333333344445555 99999999999999999999988655310 0 001223444 999
Q ss_pred HHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHH
Q 003645 108 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARI 187 (805)
Q Consensus 108 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 187 (805)
+++.+.+|..|++++.+.+++.|+..+.+++.++.++++++.++++++...+ .+..++++|+++++|++.....+
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL-----~~~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL-----NFPASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhhcCCcHHHHHHH
Confidence 9999999999999999999999999999999999999888877776663221 23679999999999998877777
Q ss_pred HH---hcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCChh---HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003645 188 LA---ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG--QSSLV---PVWVFLSGCVFVICLTLFVPPTFKWMA 259 (805)
Q Consensus 188 L~---el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~v~~~~~~~i~ 259 (805)
++ ..+ ++.++..++.+++.+||.++++++.+.+.+.... ...+. ....++..++++++++++++.+..|+.
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 234 6889999999999999999998887665544311 11111 123344445555666666666666666
Q ss_pred HHhcCCC-CcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHH-HHHHHHHhHHHHHHHHHHHHhcc
Q 003645 260 RQCHEGE-PVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA-LVEKVEDLVSGIFLPLYFVSSGL 337 (805)
Q Consensus 260 ~~~~~~~-~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~-l~~kl~~~~~~~f~PlfF~~~Gl 337 (805)
++..+.. -..+.+..+.++++++++.+++.+|.++++++|++|+++.+......+ -...+......++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5543221 134566778888888899999999999999999999999975443322 23346677778889999999999
Q ss_pred ccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhHHHHHHHHHhhccCCc
Q 003645 338 KTNIATIQG----LQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGKDRKV 408 (805)
Q Consensus 338 ~~dl~~l~~----~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~ 408 (805)
.+.+..+.. ...|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..++.++.++.+.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998766642 13466666667778889998888765544 468999999999 89999999999998877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=1.6e-27 Score=274.29 Aligned_cols=367 Identities=16% Similarity=0.147 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003645 47 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 126 (805)
Q Consensus 47 ~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 126 (805)
..+++++.....+++|+++|.+++++++|+++||..++... +.++ +.+..+++.+++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~~----~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLDR----EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCCH----HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34445556677899999999999999999999986443210 1111 344568999999999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHH
Q 003645 127 RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 206 (805)
Q Consensus 127 ~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 206 (805)
|++++.+..+++.++++|++++..+.+++. +. .+..++++|+++|+||++++.+++++.+ +++++.+++.++|
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~-----~l-~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL-----GI-PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cc-cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 999999999999999999877655554432 11 2367999999999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CC-CChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 003645 207 AVNDVAAWILLALAVALSGS-GQ-SSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAG 284 (805)
Q Consensus 207 ~i~D~~~~~ll~i~~~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~ 284 (805)
++||.++++++.++..+..+ +. +.....+.++..++.+++++++++.+..|+.++..+ .+.....++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~---~~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID---DPLVEIALTILAPFAGF 222 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHH
Confidence 99999999999888776643 21 112223334444445556666666666666655332 23456788899999999
Q ss_pred HHHHHhchhHHHHHHHHHhhccCCCCc------hHHHHHHHHHhHHHHHHHHHHHHhccccccccc--cc-hh-h-----
Q 003645 285 FITDAIGIHAMFGAFVVGVLVPKEGPF------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATI--QG-LQ-S----- 349 (805)
Q Consensus 285 ~~ae~~g~~~~lgaf~aGl~l~~~~~~------~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l--~~-~~-~----- 349 (805)
+++|.+|.|+++++|++|+++++..+. .+...+.++.....++.+++|+++|++++.... .. .. .
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999874332 122345667777789999999999999864211 10 00 0
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHHhhhHHHHHHHHHhhcc---CC--c-----c
Q 003645 350 WGL---LALVILTACLGKIVGTFVVS--LS-----FKVPLREALALGILMNTKGLVELIVLNIGKD---RK--V-----L 409 (805)
Q Consensus 350 ~~~---~~~i~~~~~~~K~~~~~l~~--~~-----~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~---~~--~-----i 409 (805)
+.. .+++.......|++.++... ++ .+++||+.+.++| .+.||.++++++..... .+ . +
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 100 11222233445655443321 11 2478999999999 79999999998754321 11 1 1
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 410 NDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 410 ~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
-.-.+.+++++.++.+...+|+++++
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l 407 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRK 407 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 12234445555555555556666554
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-24 Score=244.27 Aligned_cols=380 Identities=18% Similarity=0.207 Sum_probs=288.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003645 41 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 120 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 120 (805)
..++++.+++.+..+...+.+|++.|.+..+++.|++.||.+++...+ +....-+.+..+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 457788888899999999999999999999999999999988877652 112223444499999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 200 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 200 (805)
+|.+.+||+++....+++.+++++.+......+++.+ ++ ++..++.+|+++|+||+.++.++.++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i-~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GI-PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Ch-hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999996665555555532 22 2368999999999999999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC-CCcchHHHHHHH
Q 003645 201 MAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG-EPVEETYVCATL 277 (805)
Q Consensus 201 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l 277 (805)
++.++|++||..+++++.+...+..++... ......++..++.++.++++++.+..|+.++.... ......+..+.+
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 999999999999999999888877643321 22333444444455555555666666666555321 112456778999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcc-----CCCCch-HHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHH
Q 003645 278 AAVLAAGFITDAIGIHAMFGAFVVGVLVP-----KEGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 351 (805)
Q Consensus 278 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~-----~~~~~~-~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~ 351 (805)
...+..+.++|.+|.|++++++++|+... +..+.. +...+.++.....++.-+.|++.|++++...... ..+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHH
Confidence 99999999999999999999999998773 122222 4445557777778899999999999999887764 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhhhHHHHHHHHHhhccC-C-----ccChhHHHHHHH
Q 003645 352 LLALVILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKDR-K-----VLNDQVFAIMIL 419 (805)
Q Consensus 352 ~~~~i~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~-~-----~i~~~~~~~~vl 419 (805)
.+++.++..+++|++++++..+..+ .+++|+++++| -++||.++++++...... . .+-.-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 6677788889999999999998853 79999999999 799999999998765522 1 122223444444
Q ss_pred HHHHHHHhhHHHHHHHh
Q 003645 420 MAVVTTFMTTPLVMAVY 436 (805)
Q Consensus 420 ~~lv~t~i~~plv~~l~ 436 (805)
++++.+...+|+.++..
T Consensus 390 Sl~v~g~t~~~l~~~~~ 406 (429)
T COG0025 390 SLLVQGLTLPPLAKKLE 406 (429)
T ss_pred HHHHHhhhHHHHHHHhc
Confidence 55554555556655543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=6.6e-24 Score=244.05 Aligned_cols=372 Identities=10% Similarity=0.120 Sum_probs=260.0
Q ss_pred HHHHHHHHHHH-ccc-CCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 003645 50 ILLTRGLAFIL-RPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR 127 (805)
Q Consensus 50 l~~~~~~~~ll-~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~ 127 (805)
..++.+...+. ++. ++|..+..++.|+++|+...+... .+. ..-.-+.+-.+.+..++|..|+++|.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~-~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~ 90 (559)
T TIGR00840 18 ASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDP-PTLDSSYFFLYLLPPIVLDAGYFMPQRNFF 90 (559)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------Ccc-CCcCHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33334444444 344 599999999999999975432211 000 011135666678889999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHH
Q 003645 128 QTGKKALGIAIAGISLPFALGIGSSFLLRETIS---KGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMS 204 (805)
Q Consensus 128 ~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls 204 (805)
++.+.++.+|+.+++++.++.....+++..... .+. .+..++++|+++|+|||+.+..++++.+ .+.++-+++.+
T Consensus 91 ~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l-~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~g 168 (559)
T TIGR00840 91 ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDI-GLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFG 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheeh
Confidence 999999999999999996655444443322111 122 2378999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CChh----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003645 205 AAAVNDVAAWILLALAVALSGSGQ--SSLV----PVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLA 278 (805)
Q Consensus 205 ~a~i~D~~~~~ll~i~~~~~~~~~--~~~~----~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 278 (805)
+|++||.++++++.++..+...+. .... ....++...+.+++++++++.+..++.++.... +.....++++
T Consensus 169 ESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~ 245 (559)
T TIGR00840 169 ESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFL 245 (559)
T ss_pred hhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHH
Confidence 999999999999988777654211 1111 111222222335666677777777777776432 2456778889
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCC-----CCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHH
Q 003645 279 AVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 353 (805)
Q Consensus 279 ~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-----~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~ 353 (805)
+++++++++|.+|.|++++++++|+++.+. .+..+.-.+.+......+...+.|+++|+++.... . ...|..+
T Consensus 246 ~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~-~~~~~~i 323 (559)
T TIGR00840 246 ISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-H-EWNWAFV 323 (559)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h-hHHHHHH
Confidence 999999999999999999999999999642 22223334556666678889999999999763221 1 1244444
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhH-----HHHHHHHHH
Q 003645 354 ALVILTACLGKIVGTFVVSLS------FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV-----FAIMILMAV 422 (805)
Q Consensus 354 ~~i~~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~-----~~~~vl~~l 422 (805)
++.+++.++.|+++++..++. .+++++|.+.++| .+.||.++++++....+.+.-..+. +.+++++++
T Consensus 324 ~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvl 402 (559)
T TIGR00840 324 VATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVI 402 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHH
Confidence 555566778999998877654 3579999999999 7999999999887654433222233 333344455
Q ss_pred HHHHhhHHHHHHHh
Q 003645 423 VTTFMTTPLVMAVY 436 (805)
Q Consensus 423 v~t~i~~plv~~l~ 436 (805)
+....++|+++++.
T Consensus 403 vqG~T~~pl~~~L~ 416 (559)
T TIGR00840 403 FQGGTIKPLVEVLK 416 (559)
T ss_pred HHHhhHHHHHHHhC
Confidence 55555678877764
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-23 Score=221.09 Aligned_cols=352 Identities=18% Similarity=0.186 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003645 41 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 120 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 120 (805)
.+++.-.++++++.+.+.+..|+|.|..+-.+..|++.|-.++|.++ -++.+....++++++++++|..|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcCccC
Confidence 44444557778888999999999999999999999999999999876 2456788899999999999999999
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 200 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 200 (805)
++++.+|...++++.++..|++++-.+..+.+.++... + |.+++++|+++.+|+.+.+..+|.+.+ +|.+++.
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l---~---wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s 151 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL---D---WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS 151 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---H---HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence 99999999999999999999999966544444444321 2 268999999999999999999998888 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003645 201 MAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLA 278 (805)
Q Consensus 201 l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~ 278 (805)
+..-+|--||-.++++..-.+.+...+.+. +..+..++....++++.++..+.+..|+++|+.- .+..+..++++
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la 228 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA 228 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence 999999999999988776555554444222 2333345677888888999999999999999722 25678889999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH-HHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHH
Q 003645 279 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 357 (805)
Q Consensus 279 ~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~-~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~ 357 (805)
..++.+.+++.+|.|++++.+++|+++.|.+-..+ .+.+-.+.+ .++..-+.|...|+...++.+.. ...+.+++.+
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l 306 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHH
Confidence 99999999999999999999999999997554444 444445555 48888899999999999988765 4566666777
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhH
Q 003645 358 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 413 (805)
Q Consensus 358 ~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~ 413 (805)
.+.+++|.+++|+...-+|++++|..+++| .+-||.++++++....-.|.-+.+.
T Consensus 307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l 361 (574)
T COG3263 307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARL 361 (574)
T ss_pred HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceE
Confidence 888999999999999999999999999999 7999999999998877666555443
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.82 E-value=9.1e-19 Score=193.50 Aligned_cols=388 Identities=15% Similarity=0.135 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccC---CChhHHHHHHHHhccccccCCchhhh-----cccCCCCcHHHHHHHHHHHHHH
Q 003645 41 LAILQICLVILLTRGLAFILRPLR---QPRVIAEITGGILLGPSALGRSERFL-----QAVFPPKSQTVLDTLANLGLIF 112 (805)
Q Consensus 41 ~~l~~i~lil~~~~~~~~ll~~l~---~P~iv~~ilaGiilGP~~lg~~~~~~-----~~~fp~~~~~~l~~l~~lgl~~ 112 (805)
.-++-++++++++.++++++++-| +|.-+.-++.|+++|-.......... ...|. -+.+-.+-+-.
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~------~~~ff~vLLPp 108 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS------PDLFFLVLLPP 108 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec------ccHHHHHhhch
Confidence 345555667777888999999888 99999999999999943221111000 01111 12344455666
Q ss_pred HHHHHhhccCchhHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhc
Q 003645 113 FMFLVGLELDPKSLRQTGKKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAEL 191 (805)
Q Consensus 113 ~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 191 (805)
+.|..|.+++.+.++|+......+++.|+.+. .++|.++.++.......++.. ..++++|+++|.|+|..+..+++|+
T Consensus 109 iif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f-~d~L~fGaliSATDPVtvLaIfnel 187 (575)
T KOG1965|consen 109 IIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSF-KDCLAFGALISATDPVTVLAIFNEL 187 (575)
T ss_pred hhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccH-HHHHHHhhHhcccCchHHHHHHHHh
Confidence 89999999999999999999999999998887 455665555543223334444 7899999999999999999999999
Q ss_pred CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003645 192 KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVP---VWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 268 (805)
Q Consensus 192 ~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 268 (805)
+ ....+-.++.+++++||.++++++..+......+.+.+.. +..++........++...+.+-..+.|++.-+ +.
T Consensus 188 ~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~ 265 (575)
T KOG1965|consen 188 G-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RT 265 (575)
T ss_pred C-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 9 7889999999999999999999999887766554332222 11222222222233333444444445554333 24
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-----CCchHHHHHHHHHhHHHHHHHHHHHHhccc-cccc
Q 003645 269 EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLK-TNIA 342 (805)
Q Consensus 269 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-----~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~-~dl~ 342 (805)
...+..+.+++.+..+++||.+|+++++..++.|+.+++. .+..+.-.+.+..+.+.+..-+-|.++|+. ++..
T Consensus 266 ~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~ 345 (575)
T KOG1965|consen 266 PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQ 345 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 5667889999999999999999999999999999999862 233444455666666677777889999963 4444
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHhhhHHHHHHHHHhhc-cC-----
Q 003645 343 TIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK----------VPLREALALGILMNTKGLVELIVLNIGK-DR----- 406 (805)
Q Consensus 343 ~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lgl~l~~kG~v~l~l~~~~~-~~----- 406 (805)
...- .....+....++.+++|..-.+..+.+.+ .+.++-..++|.-..||.++++++..-. +.
T Consensus 346 k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~ 424 (575)
T KOG1965|consen 346 KHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGG 424 (575)
T ss_pred ceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccc
Confidence 4331 11223455666778888888777766654 3455566777755589999999885322 11
Q ss_pred CccChhHHHHHHHHHHHHHHhhHHHHHHHhch
Q 003645 407 KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 438 (805)
Q Consensus 407 ~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~ 438 (805)
..+-+.+..++++++++....+.|+++++...
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhccc
Confidence 33334455555677777788899999998643
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.4e-16 Score=162.67 Aligned_cols=346 Identities=15% Similarity=0.208 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchh
Q 003645 46 ICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS 125 (805)
Q Consensus 46 i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~ 125 (805)
-+.+.+++...-++-+++-+...+--.+.|+++||++++...+..- .+......-++.+-+-.-.|.++.|+.-..
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w----gn~d~it~ei~RvvLcvqvfava~eLPr~Y 94 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW----GNKDYITYEISRVVLCVQVFAVAMELPRAY 94 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc----cCcchhhhhhhhhhHhHHHHHHHHhccHHH
Confidence 3455555555566666777777777789999999999887653110 112234556778888889999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhc---CccCCchHHHH
Q 003645 126 LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAEL---KLLTADVGRMA 202 (805)
Q Consensus 126 l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~l~~s~~g~l~ 202 (805)
+.++++..+++-..-+++-+++.+...|.+.+ +.+. ..++.+++.++.|+|.....+..+- |..+.++..++
T Consensus 95 ~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p----~lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL 169 (467)
T KOG4505|consen 95 MLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP----NLNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLL 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHH
Confidence 99999988877655555555555555555543 2223 6789999999999976666666544 34567888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-----Ch---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHH
Q 003645 203 MSAAAVNDVAAWILLALAVALSGSGQS-----SL---VPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVC 274 (805)
Q Consensus 203 ls~a~i~D~~~~~ll~i~~~~~~~~~~-----~~---~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 274 (805)
.+++..||..++.++.+.+.+...+.. ++ ..++.....+.++.+++++.|..+++.-++. --..|+++.
T Consensus 170 ~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr---lid~eSfl~ 246 (467)
T KOG4505|consen 170 AAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR---LIDRESFLI 246 (467)
T ss_pred HHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHH
Confidence 999999999999998877776543321 11 1122222233344444455554444443332 224688999
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHH-HHHHhHHHHHHHHHHHHhccccccccccch----hh
Q 003645 275 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVE-KVEDLVSGIFLPLYFVSSGLKTNIATIQGL----QS 349 (805)
Q Consensus 275 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~-kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~----~~ 349 (805)
+-+++.+.|+.+.+.+|.+-.+-.|.||.+++.+..+.++..| ++..+...++.-.||++.|..++++.++.. ..
T Consensus 247 ~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~v 326 (467)
T KOG4505|consen 247 FYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPV 326 (467)
T ss_pred HHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchH
Confidence 9999999999999999999999999999999987777765543 677787778888999999999998877543 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHhhhHHHHHHHHHhhc
Q 003645 350 WGLLALVILTACLGKIVGTFVVSLSFK--VPLREALALGILMNTKGLVELIVLNIGK 404 (805)
Q Consensus 350 ~~~~~~i~~~~~~~K~~~~~l~~~~~~--~~~~~~~~lgl~l~~kG~v~l~l~~~~~ 404 (805)
|-.+++-+...+.-|+..+++...... .+|||+++.|. .+|.|.-++..+..+.
T Consensus 327 wrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 327 WRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 665555555666667766665444332 48999999999 8999998887776654
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.75 E-value=2.6e-15 Score=164.02 Aligned_cols=271 Identities=20% Similarity=0.276 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCch-------hHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPK-------SLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 173 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~-------~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 173 (805)
..+.+.+.-+.+|.|.+|+|+.-+ ..||..-. ..-++.|+++|.++-+.+. ... ....-.+|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n----~~~------~~~~~GW~ 130 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVAVN----LAG------GGALRGWA 130 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHh----CCc------hhhhhhhh
Confidence 345566666778999999999443 33332222 4567788888875433221 110 01122333
Q ss_pred HHHhhccHHHHHHHHHhcC-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003645 174 VALSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 252 (805)
Q Consensus 174 ~~ls~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 252 (805)
+-+.||.+....+|..+| ..++.++..+++.|++||+.++++++++. .++ ....+...... . +++.
T Consensus 131 -Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~---i~~~~L~~a~~-~-~~~l---- 197 (423)
T PRK14853 131 -IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSE---LNLEALLLALV-P-LALF---- 197 (423)
T ss_pred -hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCC---CCHHHHHHHHH-H-HHHH----
Confidence 334588888999999976 45889999999999999999999988765 221 22222222211 1 1111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----------CchHHHHHHHHH
Q 003645 253 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-----------PFANALVEKVED 321 (805)
Q Consensus 253 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~-----------~~~~~l~~kl~~ 321 (805)
|+.++. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++
T Consensus 198 ----~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 198 ----WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred ----HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 222232 233455555543 36677899999999999999999999411 335789999999
Q ss_pred hHHHHHHHHH-HHHhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHH
Q 003645 322 LVSGIFLPLY-FVSSGLKTNI-ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILM 389 (805)
Q Consensus 322 ~~~~~f~Plf-F~~~Gl~~dl-~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l 389 (805)
++..+++|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-..+|++-
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~ 347 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLA 347 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHH
Confidence 9999999999 9999999986 4342111112455677888999999988877754 46899988888855
Q ss_pred hhhHHHHHHHHHhhcc
Q 003645 390 NTKGLVELIVLNIGKD 405 (805)
Q Consensus 390 ~~kG~v~l~l~~~~~~ 405 (805)
+.-=++++.+.+.+++
T Consensus 348 GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 348 GIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 4444888889999984
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.68 E-value=8.2e-16 Score=166.76 Aligned_cols=279 Identities=13% Similarity=0.076 Sum_probs=167.1
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 540 (805)
Q Consensus 461 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 540 (805)
.|||+|++.++....+++.+..++.. ...+++++|+++-.....+............. ...++..+.+++
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~ 73 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQR---NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQ-------GVISQRTAWIRE 73 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHh---cCCCEEEEEeccCchhhhhcccchhHHHHHHH-------HHHHHHHHHHHH
Confidence 37999999999999999999998853 56678999988533211110000000000000 000111122222
Q ss_pred hh---hccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 003645 541 FQ---QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 617 (805)
Q Consensus 541 ~~---~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlv 617 (805)
.. ...+++++..+... .+.+++|++.|++.++||||+|+|++....+. .+|++.+++++++||||.+..
T Consensus 74 ~~~~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~ 145 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVK 145 (305)
T ss_pred HHHHHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEec
Confidence 22 23567777765543 58899999999999999999999987544333 377888999999999986643
Q ss_pred cCCCCCCcccccCCcceEEEEeccCCcCh-------HHHHHHHHHHhhCC-CeEEEEEEEeecccccCCccc---cCCcC
Q 003645 618 DRGLGGTTQVSASNVSYTITVLFFGGRDD-------REALACGARMAEHP-GISFIVIRFLLAADAIGNTVS---VDMAG 686 (805)
Q Consensus 618 drg~~~~~~~~~~~~~~~i~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~---~~~~~ 686 (805)
++.. ...++|++++.|++++ +.|+.+|.++|+.. +++++++|+.+........+. ..++.
T Consensus 146 ~~~~---------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~ 216 (305)
T PRK11175 146 DQDW---------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVY 216 (305)
T ss_pred cccc---------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhH
Confidence 3211 1246999999998653 67999999999887 999999999753221000000 00111
Q ss_pred ccccH---HHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhh
Q 003645 687 NASMD---EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSL 763 (805)
Q Consensus 687 ~~~~d---~~~l~e~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~ 763 (805)
++... ++.++++..+.... ........++..+.+....+..+.||+|+|.++ -+++.+| -+|-..+-
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~----~~~~~~~----llGS~a~~ 286 (305)
T PRK11175 217 NDAIRGQHLLAMKALRQKFGID--EEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG----RTGLSAA----FLGNTAEH 286 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--hhheeeccCCHHHHHHHHHHHhCCCEEEECCCc----cCCCcce----eecchHHH
Confidence 11111 23444554443211 111112223444433222222349999999987 4455544 47888888
Q ss_pred hccCCCCceeEEEEE
Q 003645 764 LTSLEFSTASVLIIQ 778 (805)
Q Consensus 764 las~d~~~~SvLvvq 778 (805)
++..- . .+||||.
T Consensus 287 v~~~~-~-~pVLvv~ 299 (305)
T PRK11175 287 VIDHL-N-CDLLAIK 299 (305)
T ss_pred HHhcC-C-CCEEEEc
Confidence 88522 1 6999995
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.47 E-value=8.9e-12 Score=133.88 Aligned_cols=270 Identities=19% Similarity=0.306 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 173 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 173 (805)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=..+.. ... ...+| |
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW---------~ 120 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGW---------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 345566666778999999998776554 333443 34566778888653322111 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003645 174 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 252 (805)
Q Consensus 174 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 252 (805)
+-+ .||.+-...++.=+ +..+..+....++-+++||+.++++.++... ++ ....+.......+ ++
T Consensus 121 IP~-ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~---i~~~~L~~a~~~~-~~------ 186 (373)
T TIGR00773 121 IPA-ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---ND---LSMAALLVAAVAI-AV------ 186 (373)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CC---CCHHHHHHHHHHH-HH------
Confidence 222 13333333333222 3367888899999999999999988876542 22 2222332222211 11
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hHHHHHHHHHhHHHHHH
Q 003645 253 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF----ANALVEKVEDLVSGIFL 328 (805)
Q Consensus 253 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~----~~~l~~kl~~~~~~~f~ 328 (805)
.++.+|.. +++...+..+. +++.+++ ...|+|+.+|+|++|+++|+..+. .+++++.+++.+..+++
T Consensus 187 ---l~~~~~~~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 187 ---LAVLNRCG----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ---HHHHHHcC----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12233331 23333443333 3333333 799999999999999999975433 35666677777989999
Q ss_pred HHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHHHHH
Q 003645 329 PLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 329 Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l 397 (805)
|+| |+..|.++|...+.. ........+++..+++|.+|++..++.. +++|++-.-+|++-+.-=++++
T Consensus 258 PlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSl 336 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSI 336 (373)
T ss_pred HHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 999999998655432 2223366778889999999999888764 4689998888885444447888
Q ss_pred HHHHhhcc
Q 003645 398 IVLNIGKD 405 (805)
Q Consensus 398 ~l~~~~~~ 405 (805)
.+.+.+++
T Consensus 337 fI~~LAf~ 344 (373)
T TIGR00773 337 FIASLAFG 344 (373)
T ss_pred HHHHHhcC
Confidence 88888884
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.41 E-value=1.9e-12 Score=121.74 Aligned_cols=131 Identities=24% Similarity=0.344 Sum_probs=102.4
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 541 (805)
Q Consensus 462 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 541 (805)
|||+|++++++...+++.+..+++. .+.+++++|+++.+...... ... .. .+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~---~~~~v~ll~v~~~~~~~~~~---~~~-~~---------~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA---QNGEIIPLNVIEVPNHSSPS---QLE-VN---------VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc---CCCeEEEEEEEecCCCCCcc---hhH-HH---------HHHHHHHHHHHHHH
Confidence 6999999999999999999999964 67789999999976544321 000 00 12345677777777
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 616 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIl 616 (805)
..+.++.+++.+..+ .++.++||+.|++.++|+||||+|+++...+. .+|+++++|++++||||.|+
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 666778888888776 58999999999999999999999988655333 37889999999999998763
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.34 E-value=9e-13 Score=145.36 Aligned_cols=372 Identities=12% Similarity=0.139 Sum_probs=240.3
Q ss_pred HHHHHHHHHHcccC--CChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh
Q 003645 51 LLTRGLAFILRPLR--QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ 128 (805)
Q Consensus 51 ~~~~~~~~ll~~l~--~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~ 128 (805)
.++.+..-+..+++ .|.-...|+.|+++|-...+.-. ..-+.-++ +.+--.-+-.++|-+|.-|.-+.+..
T Consensus 52 sLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~---~~~~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff~ 124 (670)
T KOG1966|consen 52 SLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALAT---IAPFFLES----DVFFLYLLPPIVLDAGYFMPNRAFFE 124 (670)
T ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhc---cccccccc----cchhhhhcCHHHhcccccCccHHHHh
Confidence 33444444444554 68888889999999954322210 00000011 11111223347899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHH
Q 003645 129 TGKKALGIAIAGISLPFALGIGSSFLLRE--TISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 206 (805)
Q Consensus 129 ~~~~~~~ia~~~~~ip~~~~~~~~~~l~~--~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 206 (805)
|...++..|+.|.+.-.+...+..|.+.. .++.. ......++.|...|..+|..+..+.+|.+ .|.-+--++.+++
T Consensus 125 NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGES 202 (670)
T KOG1966|consen 125 NLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGES 202 (670)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhh
Confidence 99999999999998874433222233222 22212 22356788999999999999999999999 7888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003645 207 AVNDVAAWILLALAVALSGSGQSS------LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAV 280 (805)
Q Consensus 207 ~i~D~~~~~ll~i~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~ 280 (805)
++||.+.++++-+...+..-++.. ......++...+.+++++.+...+.....|.+.+ ++-...++++.+.
T Consensus 203 LlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~p 279 (670)
T KOG1966|consen 203 LLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLP 279 (670)
T ss_pred hhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHH
Confidence 999999999998877765432111 1111122222233344444444444555555432 3445567899999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhccC--CCCchHH---HHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHH
Q 003645 281 LAAGFITDAIGIHAMFGAFVVGVLVPK--EGPFANA---LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLAL 355 (805)
Q Consensus 281 l~~~~~ae~~g~~~~lgaf~aGl~l~~--~~~~~~~---l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~ 355 (805)
+.+|..+|.+++|++++..+.|+++.. .....++ -.+.+-...+..-.++.|++.|.++--. ...++|..+++
T Consensus 280 YlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~ 357 (670)
T KOG1966|consen 280 YLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICL 357 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhh
Confidence 999999999999999999999999974 1222222 2333333445666788899999875422 22245666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhhhHHHHHHHHHhhccC-----CccChhHHHHHHHHHHHH
Q 003645 356 VILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKDR-----KVLNDQVFAIMILMAVVT 424 (805)
Q Consensus 356 i~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~-----~~i~~~~~~~~vl~~lv~ 424 (805)
-++...+.|.+++.+.+++.+ ++..|.+.++.+ +-||.+.+.+...--.. +..-..+..++.+++.+.
T Consensus 358 T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQ 436 (670)
T KOG1966|consen 358 TLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQ 436 (670)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeec
Confidence 777788889999888888763 577888887773 67888776654332222 222233444455556666
Q ss_pred HHhhHHHHHHHhc
Q 003645 425 TFMTTPLVMAVYK 437 (805)
Q Consensus 425 t~i~~plv~~l~~ 437 (805)
.+..-|+++|+.-
T Consensus 437 GiTIkplvk~L~V 449 (670)
T KOG1966|consen 437 GITIKPLVKFLKV 449 (670)
T ss_pred ccchHHHHHHHcc
Confidence 6677899999853
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.17 E-value=6.1e-09 Score=113.87 Aligned_cols=269 Identities=21% Similarity=0.312 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 174 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 174 (805)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.|++ +.-++.|+++|.++=+. +... +. ..-.+|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~----~n~~-~~------~~~GWgI 136 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFF----LNAD-TP------SQHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhh----eecC-CC------ccCcccc
Confidence 445666677788999999998766554 233333 34566778888653222 2111 00 0112232
Q ss_pred HHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003645 175 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 253 (805)
Q Consensus 175 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 253 (805)
-++ ||.+....++.=+ +..++.+...+++-|++||+.++++++++.. ++ ....|..+...++. +.
T Consensus 137 PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~-~l------ 202 (438)
T PRK14856 137 PMA-TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN---LKFAWLLGALGVVL-VL------ 202 (438)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC---CcHHHHHHHHHHHH-HH------
Confidence 222 3433333333323 3367788899999999999999988876542 22 22333333322211 11
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----------------------
Q 003645 254 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF---------------------- 311 (805)
Q Consensus 254 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~---------------------- 311 (805)
++.+|.. ++....++.+..++ .+.....|+|+.++..++|+++|..++.
T Consensus 203 ---~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK14856 203 ---AVLNRLN----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL 273 (438)
T ss_pred ---HHHHHcC----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence 2223321 22333444444333 3445578999999999999999963221
Q ss_pred ----------------------hHHHHHHHHHhHHHHHHHHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 003645 312 ----------------------ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGT 368 (805)
Q Consensus 312 ----------------------~~~l~~kl~~~~~~~f~Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~ 368 (805)
.+++++.+++.+..+.+|+| |.-.|..++...... .-.....+++..++||.+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHH
Confidence 14566778888888999999 889999987542211 12334556778888999999
Q ss_pred HHHHHhc----------CCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645 369 FVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 405 (805)
Q Consensus 369 ~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~ 405 (805)
+..++.. +++|++-+-.|++-+.-=++++.+.+.+++
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887764 468999888888544444888888898884
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.14 E-value=1.2e-08 Score=110.08 Aligned_cols=270 Identities=20% Similarity=0.272 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 173 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 173 (805)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.|++ +.-++.|+++|.++=+.+.. ... ...+| |
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GW---------g 127 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGW---------A 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcc---------c
Confidence 345556666778999999998766554 233333 34566778888654322211 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003645 174 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 252 (805)
Q Consensus 174 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 252 (805)
+-+ .||.+-...++.=+ +..+..+...+++-+++||+.++++.++... ++ ....|......++. +.
T Consensus 128 IPm-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~---i~~~~L~~a~~~~~-~l----- 194 (389)
T PRK09560 128 IPA-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD---LSLPALALAAIAIA-VL----- 194 (389)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---CCHHHHHHHHHHHH-HH-----
Confidence 222 23433333343322 3367778899999999999999988876542 22 22333333222111 11
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc------hHHHHHHHHHhHHHH
Q 003645 253 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF------ANALVEKVEDLVSGI 326 (805)
Q Consensus 253 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~------~~~l~~kl~~~~~~~ 326 (805)
++.+|.. ++....+..+..++ .+.....|+|+.++..++|+++|...+. .+++++++++.++.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~ 264 (389)
T PRK09560 195 ----FLLNRLG----VTKLTPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA 264 (389)
T ss_pred ----HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence 2223321 22334444444333 3445578999999999999999963221 367889999999888
Q ss_pred HHHHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHHH
Q 003645 327 FLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLV 395 (805)
Q Consensus 327 f~Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v 395 (805)
.+|+| |.-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +.+|++-...|++-+.-=++
T Consensus 265 IlPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 343 (389)
T PRK09560 265 ILPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTM 343 (389)
T ss_pred hHHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999 888898884222221 1122344567788889999998887764 46899988888855544488
Q ss_pred HHHHHHhhcc
Q 003645 396 ELIVLNIGKD 405 (805)
Q Consensus 396 ~l~l~~~~~~ 405 (805)
++.+++.++.
T Consensus 344 SLFIa~LAF~ 353 (389)
T PRK09560 344 SLFIGSLAFG 353 (389)
T ss_pred HHHHHHhhcC
Confidence 8888888884
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=2.4e-08 Score=107.51 Aligned_cols=270 Identities=21% Similarity=0.315 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hccCCchhHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 173 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 173 (805)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ +.-++.|+++|.++=+.+.. ... ...+| |
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GW---------a 127 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGW---------A 127 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 345556666778999999999777654 233333 34566788888653322111 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhH
Q 003645 174 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 252 (805)
Q Consensus 174 ~~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 252 (805)
+-+ .||.+-...++.=+ +..+..+....++-+++||+.++++.++... ++ ....+.......+ .+.
T Consensus 128 IP~-ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~--~~l---- 194 (388)
T PRK09561 128 IPA-ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD---LSMVSLGVAAVAI--AVL---- 194 (388)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC---ccHHHHHHHHHHH--HHH----
Confidence 222 23333333333222 3367788899999999999999988876542 22 2222222222111 111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCC----chHHHHHHHHHhHHHHHH
Q 003645 253 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP----FANALVEKVEDLVSGIFL 328 (805)
Q Consensus 253 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~----~~~~l~~kl~~~~~~~f~ 328 (805)
++.+|.. .+....+..+..++ .+.....|+|+.++..+.|+++|...+ .-+++++++++.++.+.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 195 ----AVLNLCG----VRRTSVYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred ----HHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence 2223321 22334444444333 344557899999999999999996322 246788999999988999
Q ss_pred HHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHHHHH
Q 003645 329 PLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 329 Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l 397 (805)
|+| |.-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-...|++-+.-=++++
T Consensus 265 PlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 343 (388)
T PRK09561 265 PLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSI 343 (388)
T ss_pred HHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 888888873211211 1122344567788889999998887764 4689998888885444447888
Q ss_pred HHHHhhcc
Q 003645 398 IVLNIGKD 405 (805)
Q Consensus 398 ~l~~~~~~ 405 (805)
.+.+.+++
T Consensus 344 FIa~LAF~ 351 (388)
T PRK09561 344 FIASLAFG 351 (388)
T ss_pred HHHHHhcC
Confidence 88888885
No 26
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.08 E-value=1.1e-09 Score=105.21 Aligned_cols=139 Identities=11% Similarity=0.207 Sum_probs=93.5
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHH----HHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL----MVHKARRNGLPFWNRGRQSNPNHIVVA 537 (805)
Q Consensus 462 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~a 537 (805)
+||+|++++++...+++.+..++.. ...+++++|+++.+....... ........ . .+..++.++.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 69 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT---KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQE-E-------DKEAKELLLP 69 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC---CCCcEEEEEeccCcccCCCCccchHHHHHHHHH-H-------HHHHHHHHHH
Confidence 4899999999999999999988854 567889999987543211000 00000000 0 0122334443
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhH-HHHHHHhhcCC--CceE
Q 003645 538 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAP--CSVG 614 (805)
Q Consensus 538 f~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~-~vn~~Vl~~Ap--csVg 614 (805)
+.+..+..++.++..+..+ .+..+.|++.|++.++|+|+||.|++.+....+ ++ ++.++|+++|| |||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vl 141 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVY 141 (146)
T ss_pred HHHHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEE
Confidence 3333333567777766654 478999999999999999999999886544332 44 59999999999 9985
Q ss_pred EEecCC
Q 003645 615 ILIDRG 620 (805)
Q Consensus 615 Ilvdrg 620 (805)
| |.+|
T Consensus 142 v-v~~~ 146 (146)
T cd01989 142 V-VSKG 146 (146)
T ss_pred E-EeCc
Confidence 4 5554
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=6.2e-08 Score=104.00 Aligned_cols=272 Identities=17% Similarity=0.247 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 174 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 174 (805)
..+.+.+.-+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=..+.. ......+| |+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW---------~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGW---------AI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcc---------cc
Confidence 345556666778999999998766543 233433 34567788888654332221 11111122 22
Q ss_pred HHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003645 175 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 253 (805)
Q Consensus 175 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 253 (805)
-+ .||.+-...++.=+ +..+..+.-..++-+++||+.++++.+++.. ++ ....+....... +.+.+
T Consensus 125 P~-ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~A~~~--~~~l~---- 191 (383)
T PRK14854 125 PS-ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS---LSLLSLSLGTLF--ILAMI---- 191 (383)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---ccHHHHHHHHHH--HHHHH----
Confidence 22 13333333333222 3367788888899999999999988876542 22 122222221111 11111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCC----chHHHHHHHHHhHHHHHHH
Q 003645 254 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP----FANALVEKVEDLVSGIFLP 329 (805)
Q Consensus 254 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~----~~~~l~~kl~~~~~~~f~P 329 (805)
+.+|.. .++....++.+..+ ..+.....|+|+.++..+.|+++|...+ ..+++++++++.++.+.+|
T Consensus 192 ----~~nr~~---~v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 192 ----ICNRIF---KINRSSVYVVLGFF--AWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred ----HHHHhc---CCceehHHHHHHHH--HHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 122210 02223334443333 3345567899999999999999996321 2367888999999999999
Q ss_pred HH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHHHHHH
Q 003645 330 LY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELI 398 (805)
Q Consensus 330 lf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l~ 398 (805)
+| |.-.|..++-..+.. ........+++..++||.+|.+..++.. +.+|++-...|++-+.-=++++.
T Consensus 263 lFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 341 (383)
T PRK14854 263 VFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLF 341 (383)
T ss_pred HHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99 888898884212221 1122344567788889999998887754 36899988888854444488888
Q ss_pred HHHhhccC
Q 003645 399 VLNIGKDR 406 (805)
Q Consensus 399 l~~~~~~~ 406 (805)
+++.+++.
T Consensus 342 Ia~LAF~~ 349 (383)
T PRK14854 342 IGVLAFND 349 (383)
T ss_pred HHHhhCCC
Confidence 89988853
No 28
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=4.5e-08 Score=106.74 Aligned_cols=267 Identities=22% Similarity=0.255 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 174 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 174 (805)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.|++ +.-|+.|+++|.++=+. +...- + ..-.+|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~~-~------~~~GWgI 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAGG-P------GASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecCC-C------ccCcccc
Confidence 345556666778999999999776654 233443 34566778888653222 21110 0 0112332
Q ss_pred HHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003645 175 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 253 (805)
Q Consensus 175 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 253 (805)
-+ .||.+-...++.=+ +..+..+...+++-+++||+.++++.+++.. ++ ....+..+..+++ +++
T Consensus 132 Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~-~~l------ 197 (423)
T PRK14855 132 PM-ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG---LNLLALLLAALTW-ALA------ 197 (423)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC---CCHHHHHHHHHHH-HHH------
Confidence 22 24444344443333 3366778889999999999999988876542 22 2223322222211 111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-Cc---------------------
Q 003645 254 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-PF--------------------- 311 (805)
Q Consensus 254 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~-~~--------------------- 311 (805)
++.+|.. ++....++.+..++ .+.....|+|+.++..+.|+++|..+ +.
T Consensus 198 ---~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T PRK14855 198 ---LLAGRLG----VTSLKIYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGA 268 (423)
T ss_pred ---HHHHHcC----CccccHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhH
Confidence 2223321 22333444444333 34456789999999999999999631 11
Q ss_pred ---------------hHHHHHHHHHhHHHHHHHHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003645 312 ---------------ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF 375 (805)
Q Consensus 312 ---------------~~~l~~kl~~~~~~~f~Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~ 375 (805)
.+++++++++.+..+.+|+| |.-.|..++-.. .. .....+++..++||.+|.+..++..
T Consensus 269 ~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 269 RLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred HHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 24677788889888899999 888898884332 22 2344566788889999998887764
Q ss_pred ----------CCChHHHHHHHHHHhhhHHHHHHHHHhhccC
Q 003645 376 ----------KVPLREALALGILMNTKGLVELIVLNIGKDR 406 (805)
Q Consensus 376 ----------~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~ 406 (805)
+++|++-.-.|++-+.-=++++.+++.+++.
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4689998888885444448888888988853
No 29
>PRK15456 universal stress protein UspG; Provisional
Probab=98.99 E-value=1.2e-09 Score=104.49 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=87.3
Q ss_pred ceEEEEeecCC--ChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003645 461 FRILACFHSAR--NIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 538 (805)
Q Consensus 461 ~riLv~v~~~~--~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 538 (805)
.+||+|+++++ +...+++.+..++.. . .+++++|+++...... . .. .......+.+.. .+..++.++.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~---~-~~l~llhv~~~~~~~~-~--~~-~~~~~~~~~~~~-~~~~~~~l~~~ 73 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD---D-GVIHLLHVLPGSASLS-L--HR-FAADVRRFEEHL-QHEAEERLQTM 73 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc---C-CeEEEEEEecCccccc-c--cc-cccchhhHHHHH-HHHHHHHHHHH
Confidence 47999999984 788999999988743 3 3799999987542111 0 00 000000000000 01112222222
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003645 539 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 539 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgI 615 (805)
.+.....++.+++.+..+ +..++|++.|++.++||||||.|++. .... .+|++.++|++++||||.|
T Consensus 74 ~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 74 VSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEE
Confidence 222222457778777665 89999999999999999999999853 3322 3789999999999999865
No 30
>PRK15005 universal stress protein F; Provisional
Probab=98.96 E-value=2.7e-09 Score=102.07 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=86.1
Q ss_pred ceEEEEeecCCC--hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003645 461 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 538 (805)
Q Consensus 461 ~riLv~v~~~~~--~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 538 (805)
.+||+|++++++ ...+++.+..++.. .+.+++++|+++............. ......+ ...++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI---DDAEVHFLTVIPSLPYYASLGLAYS---AELPAMD----DLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc---cCCeEEEEEEEccCccccccccccc---ccchHHH----HHHHHHHHHH
Confidence 379999999987 46788888888743 5678999999975322111000000 0000000 0112222333
Q ss_pred HHhhhc---cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003645 539 EAFQQL---SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 539 ~~~~~~---~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgI 615 (805)
+++.+. .+++++..+..+ +..+.|++.|++.++||||||.|+ .+..+ ..+|++.++|++++||||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~------~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITT------YLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchh------eeecchHHHHHHhCCCCEEE
Confidence 333332 455666666554 889999999999999999999884 23332 23788999999999999865
No 31
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.91 E-value=5.8e-09 Score=97.06 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=89.4
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 541 (805)
Q Consensus 462 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 541 (805)
|||+|+++++....+++.+..++.. .+.+++++|+++-... . . .+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~--~-----------~-------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR---LKAPWYVVYVETPRLN--R-----------L-------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH---hCCCEEEEEEecCccc--c-----------C-------CHHHHHHHHHHHHH
Confidence 6899999999999999999999854 5678899999863211 0 0 01234455555555
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC-CCceEE
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGI 615 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~A-pcsVgI 615 (805)
.++.+++ ..+..+ .+..+.|++.|++.++|+|+||+|+++..... .+|++.++|+++| ||+|-|
T Consensus 58 ~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 58 AEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred HHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEE
Confidence 5444443 334444 57899999999999999999999987655433 3788999999999 999765
No 32
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.89 E-value=8.1e-09 Score=98.86 Aligned_cols=133 Identities=8% Similarity=0.018 Sum_probs=85.7
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 540 (805)
Q Consensus 461 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 540 (805)
.|||+|++++++...+++.+..++.. .+.+++++|+.+......... ......... ....++..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP---YNAKVSLIHVDVNYSDLYTGL----IDVNLGDMQ----KRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh---hCCEEEEEEEccChhhhhhhh----hhcchHHHH----HHHHHHHHHHHHH
Confidence 47999999999999999998888853 567899999843211100000 000000000 0112333344555
Q ss_pred hhhccCeEEEE-eEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003645 541 FQQLSRVSVRP-MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 616 (805)
Q Consensus 541 ~~~~~~v~v~~-~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIl 616 (805)
+.+..++.+.. .... .+.++.|++.|++.++||||||.|++ ... .++++.++|+++|||||.|.
T Consensus 73 ~~~~~~~~~~~~~~~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-----~~~----~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 73 LSTNAGYPITETLSGS---GDLGQVLVDAIKKYDMDLVVCGHHQD-----FWS----KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHhCCCCceEEEEEe---cCHHHHHHHHHHHhCCCEEEEeCccc-----HHH----HHHHHHHHHHhhCCCCEEEe
Confidence 55545555433 3333 48899999999999999999999952 111 16799999999999998653
No 33
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.86 E-value=1.3e-08 Score=109.42 Aligned_cols=279 Identities=20% Similarity=0.328 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 174 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 174 (805)
..+.+.+--+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=. .+.. +.. ...-.+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~----~~~--~~~~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNA----GGP--EAAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG------SST--THHHHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeec----CCC--CcCceEEe
Confidence 455666666778999999998766553 233333 3456667777764321 1111 000 01223332
Q ss_pred HHhhccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHH
Q 003645 175 ALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPP 253 (805)
Q Consensus 175 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 253 (805)
-+ .||.+....++.=+ +..+..+...+++-+++||+.++++.+++.. ++ ....+...... ..++.
T Consensus 125 P~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~---i~~~~L~~a~~-~~~~l------ 190 (378)
T PF06965_consen 125 PM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG---ISLLWLLLAAA-ALLLL------ 190 (378)
T ss_dssp SS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHH-HHHHH------
T ss_pred cc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC---CCHHHHHHHHH-HHHHH------
Confidence 22 25544445554433 3366778899999999999999988886552 21 12222222211 11111
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--------HHHHHHHHHhHHH
Q 003645 254 TFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA--------NALVEKVEDLVSG 325 (805)
Q Consensus 254 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~--------~~l~~kl~~~~~~ 325 (805)
+..+|.. .+....+..+.. ...+.....|+|+.++..+.|+++|..++.+ +++++++++.++.
T Consensus 191 ---~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 191 ---FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp ---HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 2233321 122333333332 3344556789999999999999999755442 4888899999988
Q ss_pred HHHHHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHH
Q 003645 326 IFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGL 394 (805)
Q Consensus 326 ~f~Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~ 394 (805)
+.+|+| |.-.|..++-..+... .-.....+++..+++|.+|.+..++.. +++|++-...|++-+.-=+
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFT 340 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFT 340 (378)
T ss_dssp THHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HH
T ss_pred hhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999 9999998886554321 222334556778889999998877654 3577887777885444448
Q ss_pred HHHHHHHhhccCCccChhH
Q 003645 395 VELIVLNIGKDRKVLNDQV 413 (805)
Q Consensus 395 v~l~l~~~~~~~~~i~~~~ 413 (805)
+++.+.+.+++.....++.
T Consensus 341 mSLFIa~LAF~~~~~~~~a 359 (378)
T PF06965_consen 341 MSLFIAGLAFDDPALQNAA 359 (378)
T ss_dssp HHHHHHHHHSTT-SSHHHH
T ss_pred HHHHHHHHHcCChhhhhHH
Confidence 8889999999874333333
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.86 E-value=8.1e-09 Score=96.93 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=91.0
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH-
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE- 539 (805)
Q Consensus 461 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~- 539 (805)
.|||+|+++.++...+++.+..++.. ...+++++|+++................. ..+.......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~---~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR---SGAEITLLHVIPPPPQYSFSAAEDEESEE-----------EAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH---HTCEEEEEEEEESCHCHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh---hCCeEEEEEeecccccccccccccccccc-----------ccchhhhhhhH
Confidence 48999999999999999999888853 67889999999977655432211111000 0001110000
Q ss_pred --Hhhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003645 540 --AFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 616 (805)
Q Consensus 540 --~~~~~-~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIl 616 (805)
..... ........... .+..++|++.+++.++|+||||.|++....+.+ ++++.+++++++||||.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 11122 33444444444 489999999999999999999999865554433 8899999999999998663
No 35
>PRK09982 universal stress protein UspD; Provisional
Probab=98.85 E-value=8.8e-09 Score=98.50 Aligned_cols=132 Identities=8% Similarity=0.017 Sum_probs=84.0
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 540 (805)
Q Consensus 461 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 540 (805)
.+||+|++++++...+++.+..++.. .+.+++++|+++......+.. .....+.. .+ ...++..+.+++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~---~~a~l~llhV~~~~~~~~~~~--~~~~~~~~--~~----~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH---NDAHLTLIHIDDGLSELYPGI--YFPATEDI--LQ----LLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH---hCCeEEEEEEccCcchhchhh--hccchHHH--HH----HHHHHHHHHHHH
Confidence 47999999999999999999988853 678899999987432111000 00000000 00 001112222333
Q ss_pred hhhc-cCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003645 541 FQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 541 ~~~~-~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgI 615 (805)
..+. ....++..+..+ ++.+.||+.|++.++||||||.| +...+ ..+ ++.++|+++++|||.|
T Consensus 73 ~~~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLv 136 (142)
T PRK09982 73 LTKNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLI 136 (142)
T ss_pred HHHhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEE
Confidence 3332 233455666665 89999999999999999999976 42221 124 3899999999999855
No 36
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.84 E-value=7.5e-07 Score=92.05 Aligned_cols=257 Identities=19% Similarity=0.287 Sum_probs=159.5
Q ss_pred HHHHHHHHhhccCchhHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHHHhh---hccCCchhHHHHHHHHHHhhcc
Q 003645 110 LIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVFMGVALSITA 180 (805)
Q Consensus 110 l~~~lF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~---~~~~~~~~~~~l~lg~~ls~Ts 180 (805)
...|.+.+|+|+..+.+. ++++++ ..-++.|++.|.++ +..+... ...+|. +-+.|+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWa----------IP~ATD 136 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWA----------IPMATD 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcC----------cccHHH
Confidence 455778899999887765 344443 34455667777542 1122111 011221 112344
Q ss_pred HHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003645 181 FPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMA 259 (805)
Q Consensus 181 ~~vv~~iL~el-~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~ 259 (805)
.+-...++.=+ |..++.+.-..++-+++||+-++++.++... ++ ....+..+..++. .+.. ..
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~---Ls~~al~~a~~~i-~vL~---------~l 200 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD---LSMAALGIAALAI-AVLA---------VL 200 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC---ccHHHHHHHHHHH-HHHH---------HH
Confidence 44444444333 4578888899999999999999988776542 22 2222222221111 1111 11
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC----CchHHHHHHHHHhHHHHHHHHH-HHH
Q 003645 260 RQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVS 334 (805)
Q Consensus 260 ~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~----~~~~~l~~kl~~~~~~~f~Plf-F~~ 334 (805)
+|.. ++....++++..++..+. ..-|+|..++..+.|+.+|-.. +.-+++++.+.+.+..+.+|+| |.-
T Consensus 201 N~~~----v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaN 274 (390)
T COG3004 201 NRLG----VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFAN 274 (390)
T ss_pred HHhC----chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHcc
Confidence 2211 222334455555555443 4679999999999999999533 3346788888899889999999 888
Q ss_pred hccccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhHHHHHHHHH
Q 003645 335 SGLKTN---IATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLN 401 (805)
Q Consensus 335 ~Gl~~d---l~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l~l~~ 401 (805)
.|.+++ ...+.+ .+...+++..+++|.+|.+..++.. +.+|++-...+++-+.-=++++.+..
T Consensus 275 AGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 275 AGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred CCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 998876 333332 3345567788899999998887764 46888888888854444478888888
Q ss_pred hhccC
Q 003645 402 IGKDR 406 (805)
Q Consensus 402 ~~~~~ 406 (805)
.+++.
T Consensus 351 LAf~~ 355 (390)
T COG3004 351 LAFGS 355 (390)
T ss_pred HhcCC
Confidence 88865
No 37
>PRK10116 universal stress protein UspC; Provisional
Probab=98.69 E-value=1.3e-07 Score=90.22 Aligned_cols=135 Identities=10% Similarity=0.044 Sum_probs=87.4
Q ss_pred ceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 540 (805)
Q Consensus 461 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 540 (805)
.+||++++.+++...+++.+..++.. .+.+++++|+++.+............... ....++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP---VNGKISLITLASDPEMYNQFAAPMLEDLR---------SVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH---hCCEEEEEEEccCcccchhhhHHHHHHHH---------HHHHHHHHHHHHH
Confidence 48999999999999999999998854 56688999998654211111000000000 0111223344555
Q ss_pred hhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 003645 541 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 617 (805)
Q Consensus 541 ~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlv 617 (805)
+.+..+++...... ...+..+.|++.|++.++||||+|.|++..... +.++..+|++++||||.|+-
T Consensus 72 ~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 72 LIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEe
Confidence 54444554432222 235889999999999999999999997643221 23678899999999987653
No 38
>PRK11175 universal stress protein UspE; Provisional
Probab=98.60 E-value=1.1e-07 Score=103.13 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=91.3
Q ss_pred cceEEEEeecCCCh-------hhHHHHHHHhccCCCCC-CceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 003645 460 QFRILACFHSARNI-------PSTINLLEALRGIQKSE-GLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 531 (805)
Q Consensus 460 e~riLv~v~~~~~~-------~~li~l~~~~~~~~~~~-~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (805)
..+||++++.++.. ..+++.+..++.. . ...++++|+.+............. ......+ ...
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYND----AIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---CcCCceEEEEEecCcchhcccccccc---chhhHHH----HHH
Confidence 35899999987653 4688888888754 3 567899999875432110000000 0000000 111
Q ss_pred chHHHHHHHhhhccCeEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCC
Q 003645 532 NHIVVAFEAFQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 610 (805)
Q Consensus 532 ~~i~~af~~~~~~~~v~v~-~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~Ap 610 (805)
++..+.++++.+..+++.. ..+.. .+..+.|++.|++.++|||+||.|++.+..+.+ +|++.++|++++|
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~ 292 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLN 292 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCC
Confidence 2333445555544445432 33322 478899999999999999999999887665544 7899999999999
Q ss_pred CceEEEecCCC
Q 003645 611 CSVGILIDRGL 621 (805)
Q Consensus 611 csVgIlvdrg~ 621 (805)
|||.++..+|+
T Consensus 293 ~pVLvv~~~~~ 303 (305)
T PRK11175 293 CDLLAIKPDGY 303 (305)
T ss_pred CCEEEEcCCCC
Confidence 99977656655
No 39
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.59 E-value=3.9e-07 Score=84.40 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=91.1
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 541 (805)
Q Consensus 462 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 541 (805)
++|+|+++++....+++.+..++.. .+.+++++|+.+..+........+. ....++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~---~~~~i~~l~v~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR---LGAELVLLHVVDPPPSSAAELAELL-------------EEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCCCCcchhHHHHH-------------HHHHHHHHHHHHHH
Confidence 5899999999999999999999964 5788999999875544321000000 01123444444444
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEE
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgI 615 (805)
....+++++.....+ +..++|++.+++.++|++++|++++....+. .+++..+++++++||||.+
T Consensus 65 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 334567777766655 3489999999999999999999877543222 3677888999999999854
No 40
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.32 E-value=5.5e-06 Score=79.29 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=82.2
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc---cCC---cCccccHHHHHHHHHhhcCCCCCe
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS---VDM---AGNASMDEEVLSEFKLKTSRNGSV 708 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~---~~~---~~~~~~d~~~l~e~~~~~~~~~~v 708 (805)
+|++++.|.+..+.|+.+|.++|+..+.+++++|+++.......... ... ++.++.-++.+++++..... ..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 48999999999999999999999999999999999864321100000 000 01112233455555544321 224
Q ss_pred EEEEEEec--ChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccc-cchhhhccCCCCc-eeEEEEEe
Q 003645 709 RYEERLVR--NTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELG-PVGSLLTSLEFST-ASVLIIQQ 779 (805)
Q Consensus 709 ~~~e~~v~--~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~-~SvLvvqq 779 (805)
.+....+. ++.+++....+..+.||+|+|+++ ..|+..+ -+| .+.+.++..- .+ .+|||||.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g----~~~l~~~----~~gssva~~Vi~~a-~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS----DNHFSMK----FKKSDVASSVLKEA-PDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC----CCceeec----ccCCchhHHHHhcC-CCCceEEEEeC
Confidence 44444443 445542222222338999999998 4455543 356 6888887543 22 59999984
No 41
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.25 E-value=1e-05 Score=75.71 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=77.3
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCC-CCCeEEEEE
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR-NGSVRYEER 713 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~-~~~v~~~e~ 713 (805)
||+++..|.++.+.++++|.+||+.++.+++++|+.+....... ...+.+.+..++.++++++.... +..+.+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQLEVNVQRARKLLRQAERIAASLGVPVHTIIR 77 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chhHHHHHHHHHHHHHHHHHhhhcCCceEEEEE
Confidence 68999999999999999999999999999999999874321100 00111122233444444443221 112333222
Q ss_pred EecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEEE
Q 003645 714 LVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 778 (805)
Q Consensus 714 ~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvq 778 (805)
.-.+..+.+....+-.+.||+|+|+++.+ ++. ..-+|..-+-+.. .+ .+||||+
T Consensus 78 ~~~~~~~~I~~~a~~~~~dlIV~G~~~~~----~~~----~~~lGs~~~~v~~---~~~~pvlvv~ 132 (132)
T cd01988 78 IDHDIASGILRTAKERQADLIIMGWHGST----SLR----DRLFGGVIDQVLE---SAPCDVAVVK 132 (132)
T ss_pred ecCCHHHHHHHHHHhcCCCEEEEecCCCC----Ccc----ceecCchHHHHHh---cCCCCEEEeC
Confidence 22344333222222223999999999822 222 2357888888875 23 6899874
No 42
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.21 E-value=4.2e-06 Score=78.31 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=81.2
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHH-----HHHhhcCCCCC
Q 003645 633 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLS-----EFKLKTSRNGS 707 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~-----e~~~~~~~~~~ 707 (805)
.+||++++.|.++.+.|+.+|.++|++.+.+++++++.+.............+.....++.... +.... ....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI 79 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence 3699999999999999999999999999999999999975432100000000000000000000 00111 1233
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEE
Q 003645 708 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 777 (805)
Q Consensus 708 v~~~e~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvv 777 (805)
..+......+..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-++. .+ .+||||
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~----~~~~~~~----~~gs~~~~l~~---~~~~pVlvv 139 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAEEHNADLIVMGSRG----RSGLERL----LFGSVAEKLLR---HAPCPVLVV 139 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS----TTSTTTS----SSHHHHHHHHH---HTSSEEEEE
T ss_pred eeEEEEEeeccchhhhhccccccceeEEEeccC----CCCccCC----CcCCHHHHHHH---cCCCCEEEe
Confidence 555666666766654444443449999999997 3344443 37888888886 23 688887
No 43
>PRK09982 universal stress protein UspD; Provisional
Probab=98.18 E-value=5.9e-06 Score=78.93 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=64.3
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc-cC-C---cCccccHHHHHHHHHhhcCCCCC
Q 003645 633 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VD-M---AGNASMDEEVLSEFKLKTSRNGS 707 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~-~~-~---~~~~~~d~~~l~e~~~~~~~~~~ 707 (805)
.++|++++.|.++.+.|++.|.++|+.++++++++|+++.......... .. + +..++.-++.+++.+.+.. ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4689999999999999999999999999999999999864211100000 00 0 0111112244555554432 122
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 003645 708 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 740 (805)
Q Consensus 708 v~~~e~~v~~~~e~~~~i~~~~~~DLiiVGr~~ 740 (805)
+. .....+++.+++....+..+.||+|+|+|+
T Consensus 82 ~~-~~v~~G~p~~~I~~~A~~~~aDLIVmG~~~ 113 (142)
T PRK09982 82 TK-LRIERGEMPETLLEIMQKEQCDLLVCGHHH 113 (142)
T ss_pred ce-EEEEecCHHHHHHHHHHHcCCCEEEEeCCh
Confidence 32 223345666654444433449999999764
No 44
>PRK15005 universal stress protein F; Provisional
Probab=98.18 E-value=1.3e-05 Score=76.49 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=76.7
Q ss_pred ceEEEEeccCCcCh--HHHHHHHHHHhhCCCeEEEEEEEeecccccCCc--c-ccCC---cCccccHHHHHHHHHhhcCC
Q 003645 633 SYTITVLFFGGRDD--REALACGARMAEHPGISFIVIRFLLAADAIGNT--V-SVDM---AGNASMDEEVLSEFKLKTSR 704 (805)
Q Consensus 633 ~~~i~v~f~GG~dd--reAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~--~-~~~~---~~~~~~d~~~l~e~~~~~~~ 704 (805)
.++|++++.|.+++ +.|+++|.++|+..+.+++++|+++........ . ..+. +..++.-++.++++.++...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899999999984 799999999999999999999998642111000 0 0000 00111122445555544322
Q ss_pred CCCeEEEE-EEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEE
Q 003645 705 NGSVRYEE-RLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 777 (805)
Q Consensus 705 ~~~v~~~e-~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvv 777 (805)
. .+.+.. ...+++.+.+....+-.++||+|+|+++ .|+.+| -+|...+-+... + .+||||
T Consensus 82 ~-~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-----~~~~~~----llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 82 P-TDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-----PDITTY----LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred C-CCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-----CCchhe----eecchHHHHHHh---CCCCEEEe
Confidence 1 122222 2234444432222222349999999875 144443 368888877763 3 688887
No 45
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.11 E-value=2.1e-05 Score=75.36 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=91.5
Q ss_pred ceEEEEee-cCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 003645 461 FRILACFH-SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 539 (805)
Q Consensus 461 ~riLv~v~-~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 539 (805)
.+++++++ +.+......+.+...+.. ....++++++++..+............. ............++..+..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR---LGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAK 80 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh---cCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHH
Confidence 57999999 888888888888877754 4555678888765543322110000000 00000000022355666666
Q ss_pred HhhhccCeE-EEEeEEecCCCCh-HHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 003645 540 AFQQLSRVS-VRPMTAISSMSDM-HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 616 (805)
Q Consensus 540 ~~~~~~~v~-v~~~~~vs~~~~~-~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIl 616 (805)
+..+..++. ++.....+ +. .+.|+..|.+.++|+|+||.+++++.++. .+|++.++|++++||||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 81 ALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEE
Confidence 666555555 45555554 55 69999999999999999999988766653 38899999999999998553
No 46
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.06 E-value=0.0011 Score=70.22 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=142.0
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHH
Q 003645 110 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 189 (805)
Q Consensus 110 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 189 (805)
+..++|-.|-++|++...+..||...+-+.-+.++.+++.+++.++... .......+.+-++++.+--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4568899999999999888888888887888888888887777666532 112245666666777777777777888
Q ss_pred hcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcc
Q 003645 190 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVE 269 (805)
Q Consensus 190 el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~ 269 (805)
|.+ -++|.|-..+. .++| .+ ...++.. .. .++. +.|
T Consensus 127 ~yG-~~~d~gA~~~~--sl~~------------------GP---f~tm~aL---ga----------~gLA-~ip------ 162 (312)
T PRK12460 127 EFG-DERDVGAISIL--SLND------------------GP---FFTMLAL---GA----------AGLA-NIP------ 162 (312)
T ss_pred HcC-CHhhhhHHhhh--hhcc------------------Cc---HHHHHHH---HH----------HHHh-cCC------
Confidence 888 45555533211 1111 11 1111111 00 0111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhh
Q 003645 270 ETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 349 (805)
Q Consensus 270 e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~ 349 (805)
.. .+ -+.+=+++.|+++.| +.+.+.+.+++-. .+.+|+|-+..|.++|++.+.+. .
T Consensus 163 -~~---~l---------------v~lilpILiGmilGN---ld~~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~-G 218 (312)
T PRK12460 163 -IM---AL---------------VAALLPLVLGMILGN---LDPDMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQA-G 218 (312)
T ss_pred -hH---HH---------------HHHHHHHHHHHHHhc---cchhhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHh-C
Confidence 00 00 013345666777765 2223444454443 55889999999999999888642 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHh
Q 003645 350 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALG--ILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFM 427 (805)
Q Consensus 350 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--l~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i 427 (805)
+. .+++.+..++.-...++...+++|.+.+-++.++ .+-+.-|-..++... ...+.. .+.-+..|.++++.|.+
T Consensus 219 ~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~-~~~Ataqvaa~vivTai 294 (312)
T PRK12460 219 LA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPV-AAAATAQVAASVIVTAI 294 (312)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHH-HHHHHHHHHHHHHHHHH
Confidence 22 2222233334455566666788888888777666 433322322222221 111111 23445555666666777
Q ss_pred hHHHHH-HHhch
Q 003645 428 TTPLVM-AVYKP 438 (805)
Q Consensus 428 ~~plv~-~l~~~ 438 (805)
..|++. |++|+
T Consensus 295 l~P~~t~~~~k~ 306 (312)
T PRK12460 295 LTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHHHH
Confidence 666654 55544
No 47
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.99 E-value=4e-05 Score=71.08 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=75.4
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEE
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 714 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~ 714 (805)
||++++.|.+..++|+++|.++|++.+.+++++++.+.+... ..+..++.++++++..... .+.+....
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~----------~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR----------LSEAERRRLAEALRLAEEL-GAEVVTLP 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc----------CCHHHHHHHHHHHHHHHHc-CCEEEEEe
Confidence 689999999999999999999999999999999998653211 1111234444544333211 23333323
Q ss_pred ecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCceeEEEE
Q 003645 715 VRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 777 (805)
Q Consensus 715 v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 777 (805)
-.+..+.+....+..+.|++++|.++ -.++.++ -+|-..+-++..--. .+|||+
T Consensus 70 ~~~~~~~I~~~~~~~~~dllviG~~~----~~~~~~~----~~Gs~~~~v~~~a~~-~~v~v~ 123 (124)
T cd01987 70 GDDVAEAIVEFAREHNVTQIVVGKSR----RSRWREL----FRGSLVDRLLRRAGN-IDVHIV 123 (124)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCC----CchHHHH----hcccHHHHHHHhCCC-CeEEEe
Confidence 33444433222222339999999998 2333332 467777777754312 467765
No 48
>PRK10116 universal stress protein UspC; Provisional
Probab=97.92 E-value=2.6e-05 Score=74.23 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=72.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccC-Cc---CccccHHHHHHHHHhhcCCCCCe
Q 003645 633 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVD-MA---GNASMDEEVLSEFKLKTSRNGSV 708 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~-~~---~~~~~d~~~l~e~~~~~~~~~~v 708 (805)
.+||++++.+.++.+.||++|.++|+..+++++++++.+............ ++ ..++.-+++++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 469999999999999999999999999999999999975321100000000 00 00111123444444332 12
Q ss_pred EEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEEE
Q 003645 709 RYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 778 (805)
Q Consensus 709 ~~~e~~v~~~~e~~~~i~~~~--~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvq 778 (805)
......+..|.....+++... ++||+|+|+++ .++++.| +...+-++. .+ .+||||-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~----~~~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN----HSFFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc----chHHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 122223333322333444443 39999999998 3344433 223444443 23 6888874
No 49
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.90 E-value=0.024 Score=62.92 Aligned_cols=307 Identities=18% Similarity=0.185 Sum_probs=157.6
Q ss_pred CCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHH
Q 003645 64 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISL 143 (805)
Q Consensus 64 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~i 143 (805)
.+|+++--++.|+++.. +|.++ ++.+.+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 37888888888899886 34331 123446778888888888888888899999999999887643 333344
Q ss_pred HHHHHHHHHHHHHhhh-ccCCchhHHHHHHHHHH-hhccHHHHHHHHHhcCccCCchHHHHHHHHHHHH-HHHHHHHHHH
Q 003645 144 PFALGIGSSFLLRETI-SKGVDSTSFLVFMGVAL-SITAFPVLARILAELKLLTADVGRMAMSAAAVND-VAAWILLALA 220 (805)
Q Consensus 144 p~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~l-s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D-~~~~~ll~i~ 220 (805)
..++|..+++.+.... .++. +...+.+.|.-. -..-+..+.+. ++. + .-.+++++.-| +..-+.+.+.
T Consensus 94 g~viG~~va~~l~~~~l~~~~-wk~ag~l~gsyiGGs~N~~Av~~a---l~~-~----~~~~~a~~aaDnv~~~~~~~~l 164 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPEG-WKIAGMLAGSYIGGSVNFVAVAEA---LGV-S----DSLFAAALAADNVVMALWFAFL 164 (378)
T ss_pred HHHHHHHHHHHHHhhcccchH-HHHHHHHHhcccCchhHHHHHHHH---HCC-C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665554432 2111 101111111111 11112223332 231 1 22344444444 3333333333
Q ss_pred HHHhhcCC------CChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hcCCCCcchHHHHHHHHHHHHHHHHHHHhch
Q 003645 221 VALSGSGQ------SSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQ--CHEGEPVEETYVCATLAAVLAAGFITDAIGI 292 (805)
Q Consensus 221 ~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~--~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~ 292 (805)
..+..... .+...- .. ..-.-..+. .+++++.. ..+...+...+....+++.++-
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~ 227 (378)
T PF05684_consen 165 LALPPFARKFDRWTKADTSS---IE-------------ALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAA 227 (378)
T ss_pred HHHhhhhHHhhhccCCCccc---cc-------------hhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHH
Confidence 33221000 000000 00 000000000 00011111 2233444444433333332221
Q ss_pred -------------hHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHH
Q 003645 293 -------------HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILT 359 (805)
Q Consensus 293 -------------~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~ 359 (805)
-.++-....|++.. .+|..+.+ .--+.+. .+++=+||+.+|++.|+..+.+. . ..+++.++
T Consensus 228 ~l~~~~~~~~~~~~~il~~tt~~l~~~-~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~a-p--~~~l~~~i 301 (378)
T PF05684_consen 228 WLPPLFAGISSSTWLILTVTTLGLATS-FPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDA-P--SLFLFGFI 301 (378)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHh-ccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHh-H--HHHHHHHH
Confidence 13444455666665 45555554 3445554 67778899999999999988752 2 23334455
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhH
Q 003645 360 ACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 413 (805)
Q Consensus 360 ~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~ 413 (805)
.+..-.+..+..++++|+|+.+...-+- -|.-|-.+......+++.....+-+
T Consensus 302 ~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgv 354 (378)
T PF05684_consen 302 ILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGV 354 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHH
Confidence 5667788888999999999988665554 5666766665555555544444433
No 50
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.85 E-value=6.9e-05 Score=71.52 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc--cccCCcCccccH---HHHHHHHHhhcCCCCC
Q 003645 633 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT--VSVDMAGNASMD---EEVLSEFKLKTSRNGS 707 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~--~~~~~~~~~~~d---~~~l~e~~~~~~~~~~ 707 (805)
.+||++++.|.++.+.||.+|..+|+..+++++++++.++....... ....++.+++.. .+.++++..+. .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 46999999999999999999999999999999999985321110000 000000011111 12333433221 1
Q ss_pred eEEEEEE--ecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEEEe
Q 003645 708 VRYEERL--VRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQ 779 (805)
Q Consensus 708 v~~~e~~--v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq 779 (805)
+...+.. .+++.+.+....+-.++||+|+|+++ . ++. .+|-..+-+.. .+ .+||||..
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~----~-~~~------~lgSva~~v~~---~a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ----D-FWS------KLMSSARQLIN---TVHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc----c-HHH------HHHHHHHHHHh---hCCCCEEEecC
Confidence 2222223 35555543322222349999999996 1 111 15555555554 23 69999975
No 51
>PRK15456 universal stress protein UspG; Provisional
Probab=97.84 E-value=0.00011 Score=70.11 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=76.1
Q ss_pred ceEEEEeccCCc--ChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcc-ccC-CcC---ccccHHHHHHHHHhhcCCC
Q 003645 633 SYTITVLFFGGR--DDREALACGARMAEHPGISFIVIRFLLAADAIGNTV-SVD-MAG---NASMDEEVLSEFKLKTSRN 705 (805)
Q Consensus 633 ~~~i~v~f~GG~--ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~-~~~-~~~---~~~~d~~~l~e~~~~~~~~ 705 (805)
.+||++++.|.+ ..+.|+++|.++|+.. .+++++|+.++........ ..+ ++. .++.-++.++++.++....
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 369999999984 7999999999999875 5899999986432110000 000 001 1122224455555443221
Q ss_pred C-CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCceeEEEEE
Q 003645 706 G-SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 778 (805)
Q Consensus 706 ~-~v~~~e~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvq 778 (805)
+ ++... ...+++.+.+....+-.+.||+|+|+++ . ++.+| -+|-..+-++..- + .+||||.
T Consensus 81 ~~~v~~~-v~~G~~~~~I~~~a~~~~~DLIVmG~~g----~-~~~~~----llGS~a~~v~~~a-~-~pVLvV~ 142 (142)
T PRK15456 81 PSRIKQH-VRFGSVRDEVNELAEELGADVVVIGSRN----P-SISTH----LLGSNASSVIRHA-N-LPVLVVR 142 (142)
T ss_pred CcceEEE-EcCCChHHHHHHHHhhcCCCEEEEcCCC----C-Cccce----ecCccHHHHHHcC-C-CCEEEeC
Confidence 1 22221 1223444433222222339999999987 2 23222 3799988888631 1 6999873
No 52
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.68 E-value=0.00024 Score=65.48 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEE
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 714 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~ 714 (805)
+|++++.+++..+.++..|.+||+..+.+++++++.+....... ...+.+.+..++.+++++..... ..+......
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 76 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELAELLEEEARALLEALREALAE-AGVKVETVV 76 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 58899999999999999999999999999999999865332100 00011222334666777655311 122222222
Q ss_pred e-cCh-HHHHHHHHhccCCCEEEEccCC
Q 003645 715 V-RNT-AETIAVIREVSRCNLLLVGRMP 740 (805)
Q Consensus 715 v-~~~-~e~~~~i~~~~~~DLiiVGr~~ 740 (805)
. .+. .++...+++ .++|++|+|+++
T Consensus 77 ~~~~~~~~i~~~~~~-~~~dlvvig~~~ 103 (130)
T cd00293 77 LEGDPAEAILEAAEE-LGADLIVMGSRG 103 (130)
T ss_pred ecCCCHHHHHHHHHH-cCCCEEEEcCCC
Confidence 2 222 222222222 238999999987
No 53
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.61 E-value=0.015 Score=61.34 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=105.1
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 003645 110 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 188 (805)
Q Consensus 110 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 188 (805)
+..++|-.|-++|++...+..||...+-+.-+.+..+++.++..++...- ..+.......+.+-++++.+-...=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 45688999999999999999999998888888888888887777775421 00111224566677777777777777777
Q ss_pred HhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003645 189 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 268 (805)
Q Consensus 189 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 268 (805)
.|.+ -++|.|-.. ...++|.=.+.++. +... +..
T Consensus 131 ~~yG-d~~D~gA~~--i~sl~~GPf~tMl~------------------------LG~s-G~a------------------ 164 (314)
T PF03812_consen 131 GQYG-DEEDVGAFS--ILSLNDGPFFTMLA------------------------LGAS-GLA------------------ 164 (314)
T ss_pred HHhC-CHHHhHHHH--HHHhhhhHHHHHHH------------------------Hhhc-ccc------------------
Confidence 7877 345554322 11122221111111 0000 000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccch
Q 003645 269 EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 347 (805)
Q Consensus 269 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~ 347 (805)
+..+ .-+=+.+=+++.|+++.| +.+++.+-+.+-. ..++|+|-...|..+|+..+...
T Consensus 165 -~ip~----------------~~lv~~llP~iiG~iLGN---LD~~~r~fl~~~~-~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 165 -NIPW----------------MSLVAALLPIIIGMILGN---LDPDFRKFLAPGV-PILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred -CCCH----------------HHHHHHHHHHHHHHHHhc---CCHHHHHHHhcCC-CeeeehhhhhhcCCCCHHHHHHh
Confidence 0000 000123446778888876 4455555555554 78899999999999999887653
No 54
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.58 E-value=0.00073 Score=74.05 Aligned_cols=131 Identities=13% Similarity=0.053 Sum_probs=84.7
Q ss_pred cceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 003645 460 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 539 (805)
Q Consensus 460 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 539 (805)
-.|||+|++++++...+++.+..++.. .....+++++|+++....... .... ....+++++..+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~-~g~~AeL~lL~Vv~~~~~~~~---~~~~------------~~~~eelle~~~ 68 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEE-AAETPTVHLVAAASGRAVDPE---GQDE------------LAAAEELLERVE 68 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEEEecCcccccc---hhHH------------HHHHHHHHHHHH
Confidence 358999999999999999999999853 113689999999984321111 0000 012344555555
Q ss_pred Hhhhc------cCeEEEEeEEec-----CCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhc
Q 003645 540 AFQQL------SRVSVRPMTAIS-----SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 608 (805)
Q Consensus 540 ~~~~~------~~v~v~~~~~vs-----~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ 608 (805)
+..++ .++++++.+... ...+.++.|+++|++.++|+|||+=..+... +.+.++.+- .=|.+
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~------~~~~~~~~~-~~~~~ 141 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGG------TAPMLQPLE-RELAR 141 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCC------CCcccchHH-HHHHh
Confidence 44432 578888777652 1148999999999999999999997554322 222344443 33556
Q ss_pred CCCce
Q 003645 609 APCSV 613 (805)
Q Consensus 609 ApcsV 613 (805)
+-|++
T Consensus 142 ~~~~~ 146 (357)
T PRK12652 142 AGITY 146 (357)
T ss_pred cCCce
Confidence 66653
No 55
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.50 E-value=0.043 Score=59.56 Aligned_cols=141 Identities=11% Similarity=0.233 Sum_probs=83.4
Q ss_pred HHHHHHhhHHHHHHHHHHhc-CCCCcch------------------------HH-HHHHHHHHHHHHHHHHHhc-----h
Q 003645 244 VICLTLFVPPTFKWMARQCH-EGEPVEE------------------------TY-VCATLAAVLAAGFITDAIG-----I 292 (805)
Q Consensus 244 ~~~~~~v~~~~~~~i~~~~~-~~~~~~e------------------------~~-~~~~l~~~l~~~~~ae~~g-----~ 292 (805)
.+..+.+..|+.+|+++|.. +..+.++ .. +.++...+...+++.+.++ +
T Consensus 169 lv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~l 248 (404)
T COG0786 169 LVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLAL 248 (404)
T ss_pred HHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34455678899999997751 1111111 01 2233333334445666655 5
Q ss_pred hHHHHHHHHHhhccCCCCc--hHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 003645 293 HAMFGAFVVGVLVPKEGPF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFV 370 (805)
Q Consensus 293 ~~~lgaf~aGl~l~~~~~~--~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l 370 (805)
.....+++.|.++.+--+. ..++.++.-+...++-+-+|....=|++.+..+.+ ...++++++.+-..+.-+.+.++
T Consensus 249 P~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL~vQ~i~m~lfa~fv 327 (404)
T COG0786 249 PLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVILAVQTIVMALFAIFV 327 (404)
T ss_pred cHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999862111 11233333333446777788777778888887764 23444444444444455666777
Q ss_pred HHHhcCCChHHHHHH
Q 003645 371 VSLSFKVPLREALAL 385 (805)
Q Consensus 371 ~~~~~~~~~~~~~~l 385 (805)
..+..|-++..+...
T Consensus 328 tfr~mG~~YdAaV~~ 342 (404)
T COG0786 328 TFRLMGKNYDAAVLA 342 (404)
T ss_pred HHHHhCcchhHHHHh
Confidence 788888888776653
No 56
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.36 E-value=0.096 Score=58.14 Aligned_cols=90 Identities=14% Similarity=0.267 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhhccCC------CCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Q 003645 292 IHAMFGAFVVGVLVPKE------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKI 365 (805)
Q Consensus 292 ~~~~lgaf~aGl~l~~~------~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~ 365 (805)
+....+|++.|+++.+- ....++..+++..+ .+-+|.+..=+.+++..+.+ ...++++++++..++.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~----sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGI----SLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHH----HHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46778999999999751 12344445555444 44455455556677877765 233333333444444445
Q ss_pred HHHHHHHHhcCCChHHHHHHHH
Q 003645 366 VGTFVVSLSFKVPLREALALGI 387 (805)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~lgl 387 (805)
...++..+.++-++ |+..++.
T Consensus 322 f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHHhh
Confidence 55666777888886 5555444
No 57
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.27 E-value=0.0013 Score=72.14 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=65.6
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCC-----
Q 003645 632 VSYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR----- 704 (805)
Q Consensus 632 ~~~~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~----- 704 (805)
..+||++|+.|.+..+.|+++|..+|+.. +++++++|+++..... . ..+...+..++.+++.++....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~-~----~~~~~~~~~eelle~~~~~~~~~l~~~ 78 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD-P----EGQDELAAAEELLERVEVWATEDLGDD 78 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc-c----chhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45799999999999999999999999884 6999999998743211 0 0001111122334444332211
Q ss_pred CCCeEEEEEEe---------cChHHHHHHHHhccCCCEEEEccCC
Q 003645 705 NGSVRYEERLV---------RNTAETIAVIREVSRCNLLLVGRMP 740 (805)
Q Consensus 705 ~~~v~~~e~~v---------~~~~e~~~~i~~~~~~DLiiVGr~~ 740 (805)
...+.+...++ +++.|++....+..++||||||..-
T Consensus 79 ~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 79 ASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred cCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 12355554443 4666665444443449999999985
No 58
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.23 E-value=0.4 Score=52.24 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred HcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCc-HHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHH
Q 003645 60 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKS-QTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAI 138 (805)
Q Consensus 60 l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~-~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~ 138 (805)
+++.+++.++--++.|+++|+......+ +..- .. ...-+.+-++|.+ +.|.+++++++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~---~~~~--~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRD---EEKK--RGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccch---hhcc--chHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 4556899999999999999975421111 1111 12 1233466677766 56999999999999998887777
Q ss_pred HHHHHHHHHHHHHH
Q 003645 139 AGISLPFALGIGSS 152 (805)
Q Consensus 139 ~~~~ip~~~~~~~~ 152 (805)
..+...+.+++.++
T Consensus 97 ~~v~~~~~~~~~~g 110 (335)
T TIGR00698 97 LILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555444
No 59
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.27 Score=52.63 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=89.9
Q ss_pred hHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003645 68 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 147 (805)
Q Consensus 68 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~ 147 (805)
+.-.+++|+.+|-..-+... ..+ .-+....+.--.+|+++.|+-.=+++|.+++++..++.-.+ +.+..+-+++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 44557788888854433111 010 01122345556788888888888999999998776553222 2233333333
Q ss_pred H----HHHHHHHHhhhccCCc-hhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 148 G----IGSSFLLRETISKGVD-STSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVA 222 (805)
Q Consensus 148 ~----~~~~~~l~~~~~~~~~-~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~ 222 (805)
+ +++++++.. +.+ .....+.+|++=+ ||-..+-. ++.+.+. ..++....+||++.+++++....
T Consensus 94 ~P~lm~~la~~fl~----~~pey~~GlILlglApC-~aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 94 GPLLMFALAWFFLP----DEPEYRAGLILLGLAPC-IAMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHHHhhhh-HHHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 333433332 111 1122223332222 23222322 2222222 45556677899999988865544
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 003645 223 LSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQC 262 (805)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~ 262 (805)
+.-+..+...+++.++..+...+.+-++.+...+++..|.
T Consensus 163 ~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 163 FFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322212223455556555555555566666666666554
No 60
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.10 E-value=0.02 Score=60.08 Aligned_cols=254 Identities=13% Similarity=0.163 Sum_probs=132.2
Q ss_pred HHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 003645 110 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 188 (805)
Q Consensus 110 l~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 188 (805)
+..++|-.|-++|++...+..||...+-+.-+.+..+++.++..++...- ..+.......+.+-++++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 44688999999999998888888887777788888888887777765321 00111123455555666666666666667
Q ss_pred HhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCc
Q 003645 189 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPV 268 (805)
Q Consensus 189 ~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~ 268 (805)
.|.+ -++|.|-..+ ..++|. + ...++ ++.. .+..
T Consensus 131 ~qyG-d~~D~gA~~i--~sl~~G------------------P---f~TMi---~LG~-sGlA------------------ 164 (314)
T TIGR00793 131 QQYG-TKEEAGAFVL--MSLESG------------------P---LMTMV---ILGT-AGIA------------------ 164 (314)
T ss_pred HHcC-CHhhhhhhhh--hhhccC------------------c---HHHHH---HHhh-ccCC------------------
Confidence 7776 3445553221 111111 1 11110 0000 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchh
Q 003645 269 EETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 348 (805)
Q Consensus 269 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~ 348 (805)
+... .-+=+.+=+++.|+++.| +.+++.+-+.+-. ..++|+|-...|..+|+..+.+.-
T Consensus 165 -~ip~----------------~~lv~~ilPlliG~ilGN---LD~~~r~fl~~~~-~~lIpFf~FaLGaginl~~i~~aG 223 (314)
T TIGR00793 165 -SFEP----------------HVFVGAVLPFLVGFALGN---LDPELRDFFSKAV-QTLIPFFAFALGNTIDLGVIIQTG 223 (314)
T ss_pred -CCCH----------------HHHHHHHHHHHHHHHHhc---CCHHHHHHhccCC-CeeeehhhhhhcCCCCHHHHHHhC
Confidence 0000 000123457788888876 4455555555554 788999999999999998775432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHhh-hHH---HHHHHHHhhccCCccChhHHHHHHHHHHH
Q 003645 349 SWGLLALVILTACLGKIVGTFVVSLSFK-VPLREALALGILMNT-KGL---VELIVLNIGKDRKVLNDQVFAIMILMAVV 423 (805)
Q Consensus 349 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~-~~~~~~~~lgl~l~~-kG~---v~l~l~~~~~~~~~i~~~~~~~~vl~~lv 423 (805)
.-+++..+ ..++.--...++.-++.+ -+..- |+..++ -|. ...+++..-.+.... .+.-+..|.++++
T Consensus 224 l~GIlLGl--~v~~vtG~~~~~~dr~~~g~~g~a----G~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavi 296 (314)
T TIGR00793 224 LLGILLGV--SVIILTGIPLILADKFIGGGDGTA----GIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVI 296 (314)
T ss_pred cchHHHHH--HHHHHHhHHHHHHHHHhcCCCCch----hhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHH
Confidence 22222111 122222334555556553 22222 332222 222 222333322222221 2344555566666
Q ss_pred HHHhhHHHHH-HHhc
Q 003645 424 TTFMTTPLVM-AVYK 437 (805)
Q Consensus 424 ~t~i~~plv~-~l~~ 437 (805)
.|.+..|++. |++|
T Consensus 297 vTaiL~Pilta~~~k 311 (314)
T TIGR00793 297 VTSLLVPIATVWWSK 311 (314)
T ss_pred HHHHHHHHHHHHHHH
Confidence 6777777665 5444
No 61
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.04 E-value=0.48 Score=50.83 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHhcchh---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHh
Q 003645 101 VLDTLANLGLIFFMFLVGLELDPKSLRQTGKK---ALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALS 177 (805)
Q Consensus 101 ~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~---~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 177 (805)
.++..-..++.++||..|+.+..+++++..++ .+.....++.+--.++++++..+. + ..-+..|..+-
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l-------~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L-------PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C-------CHHHHHhHHhe
Confidence 34445588899999999999999999865544 333333344333344555554443 1 22345555553
Q ss_pred hccHH----HHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CChhHHHHHHHHHHHHHHHHHh
Q 003645 178 ITAFP----VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ---SSLVPVWVFLSGCVFVICLTLF 250 (805)
Q Consensus 178 ~Ts~~----vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~v 250 (805)
.+.|. .+...+. +.++ -+.++.+.++-+++.++.-+.+.+..++. ..+...+.++..++.=++.+.+
T Consensus 106 ~~~Pggv~S~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 106 GCCPGGVASNAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQL 179 (319)
T ss_pred eeCCCchhHHHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222222 2222 45667777888888777665555443332 2234455556556666667777
Q ss_pred hHHHHHHHHHHh
Q 003645 251 VPPTFKWMARQC 262 (805)
Q Consensus 251 ~~~~~~~i~~~~ 262 (805)
+|+......++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 777766555553
No 62
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.75 E-value=0.29 Score=54.25 Aligned_cols=282 Identities=16% Similarity=0.223 Sum_probs=144.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHH----h--hccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchh
Q 003645 93 VFPPKSQTVLDTLANLGLIFFMFLV----G--LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDST 166 (805)
Q Consensus 93 ~fp~~~~~~l~~l~~lgl~~~lF~~----G--le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~ 166 (805)
++|++..+..+.+-+-.=.+.+|.+ | +.||.+.+.|...|-+...+.+.+..++++..++.+++... .
T Consensus 77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~------~ 150 (414)
T PF03390_consen 77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF------K 150 (414)
T ss_pred CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------H
Confidence 4555444444444332222233333 3 48899999998888888888888888888887777776432 1
Q ss_pred HHHHHHHHHH-----hhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------C------C
Q 003645 167 SFLVFMGVAL-----SITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG------Q------S 229 (805)
Q Consensus 167 ~~~l~lg~~l-----s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~------~------~ 229 (805)
...+.+++-. ..-+.|...-.-+-++.-..++-..++.+.++..+++++.-++.--+.... + .
T Consensus 151 ~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~ 230 (414)
T PF03390_consen 151 DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGD 230 (414)
T ss_pred HHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCc
Confidence 1122222111 111122111111112333445555666777777777776665544332110 0 0
Q ss_pred ---C-------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 003645 230 ---S-------LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAF 299 (805)
Q Consensus 230 ---~-------~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf 299 (805)
. ......+. .-.+..+.+|.++.+...+. ..+. +...++.. .+...+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~g-~Gllla~~~y~~G~ll~~~i-------~ih~-~a~mIi~~-----~i~K~~~-------- 288 (414)
T PF03390_consen 231 DEEEEAKKKEKPIDFSDMG-AGLLLACSFYILGVLLSKLI-------GIHA-YAWMIILV-----AIVKAFG-------- 288 (414)
T ss_pred cccccccccCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhc-------CCcH-HHHHHHHH-----HHHHHhC--------
Confidence 0 00011111 11122333344443333333 0111 11111111 1122222
Q ss_pred HHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 003645 300 VVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVP 378 (805)
Q Consensus 300 ~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~ 378 (805)
++| +.-++=.++...+...-+.+-..+-+|+. +|+..+....++.. +++.+..+++-.++.++.+++.|+-
T Consensus 289 ----lvP---~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~Y 360 (414)
T PF03390_consen 289 ----LVP---ESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFY 360 (414)
T ss_pred ----cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 233 22223333444455555666667778888 99988776555553 3455667778888999999999986
Q ss_pred hHH-HHHHHHHHhhhH-HHHHHHHHhhccCCccC
Q 003645 379 LRE-ALALGILMNTKG-LVELIVLNIGKDRKVLN 410 (805)
Q Consensus 379 ~~~-~~~lgl~l~~kG-~v~l~l~~~~~~~~~i~ 410 (805)
+-| ++.-|+.++.+| .-++++++.+...+++.
T Consensus 361 PvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 361 PVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred hHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 555 555676676665 45677777666666554
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.75 E-value=0.65 Score=50.08 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=57.7
Q ss_pred ccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHH-HHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHH
Q 003645 62 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTV-LDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAG 140 (805)
Q Consensus 62 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~-l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~ 140 (805)
...++.++--++.|+++|+..++.-+.+ . ..... -+.+-++|.+ +.|.++++.++.+.+.+.+.+....
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHH
Confidence 4578888888999999997333332211 0 12222 3466677766 5799999999999999888888877
Q ss_pred HHHHHHHHHHHH-HHH
Q 003645 141 ISLPFALGIGSS-FLL 155 (805)
Q Consensus 141 ~~ip~~~~~~~~-~~l 155 (805)
+...+.+++.++ ..+
T Consensus 93 v~~~~~~~~~lg~r~~ 108 (305)
T PF03601_consen 93 VILTFLLTYWLGRRLF 108 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 777777666555 444
No 64
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.73 E-value=0.18 Score=54.24 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHhhhHH-HHHHHHH
Q 003645 325 GIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALA-LGILMNTKGL-VELIVLN 401 (805)
Q Consensus 325 ~~f~PlfF~~~Gl~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~-lgl~l~~kG~-v~l~l~~ 401 (805)
.+.-|+. +.+|.. +|+..+.+..+|..+ ++.+..+++-..+.++.+|+.|+-+-|+-. -|+.|+.+|. -++++++
T Consensus 327 ~~t~~Lm-~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLs 404 (438)
T COG3493 327 NLTWPLM-AGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLS 404 (438)
T ss_pred hhHHHHH-HhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhh
Confidence 3444544 455666 888887765566644 344566677888899999999986655554 4588887764 4566666
Q ss_pred hhccCCccCh
Q 003645 402 IGKDRKVLND 411 (805)
Q Consensus 402 ~~~~~~~i~~ 411 (805)
.+-..+.++-
T Consensus 405 Aa~RM~LmpF 414 (438)
T COG3493 405 AADRMELMPF 414 (438)
T ss_pred hcchhccccH
Confidence 6655555543
No 65
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.64 E-value=1.6 Score=48.80 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHhhccCCCCc--hHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH-HH
Q 003645 291 GIHAMFGAFVVGVLVPKEGPF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKI-VG 367 (805)
Q Consensus 291 g~~~~lgaf~aGl~l~~~~~~--~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~-~~ 367 (805)
.+....+|++.|+++.+-.+. ..++.++.-+...++.+-+|.+..=+.+++..+.+ .+..+.+++++.++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999762111 11122223333345666677777777888888874 33333333334433333 44
Q ss_pred HHHHHHhcCCChHHHHH
Q 003645 368 TFVVSLSFKVPLREALA 384 (805)
Q Consensus 368 ~~l~~~~~~~~~~~~~~ 384 (805)
.++..+..+-+ .|+-.
T Consensus 322 ~fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHHhHHhccch-HHHHH
Confidence 56667777766 66655
No 66
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.42 E-value=1.5 Score=47.74 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHH---HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhc
Q 003645 103 DTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIA---IAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSIT 179 (805)
Q Consensus 103 ~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia---~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 179 (805)
+.....++..++|..|+.++.+++++..++.-... ...+.+.=++++++...+.... ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 46677888888999999999999987555442222 2222222233444443332111 1223444433222
Q ss_pred cHHHHHH--HHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003645 180 AFPVLAR--ILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG 225 (805)
Q Consensus 180 s~~vv~~--iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~ 225 (805)
-|..+.. .++..- +.+. ..++..+.++.++++++.-+...+..
T Consensus 103 lPtTv~S~v~~T~~A--gGN~-a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLA--GGNV-ALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred CCchhhHHHHHHHHc--CCCH-HHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 2211111 122221 2222 45556677777777777655554433
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.35 E-value=0.12 Score=61.80 Aligned_cols=117 Identities=13% Similarity=0.072 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC-CCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHH
Q 003645 273 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 351 (805)
Q Consensus 273 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~ 351 (805)
+.+.+....++..++..+|+++++|=.++|+++.. .-..- .-.+.++.+. .+-..++.+.+|+.+|+..+... ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i-~~~~~i~~la-elGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLV-TDVESILHFA-EFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCC-CCHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 45566666777788899999999999999999852 11111 1123355553 66677888889999999877542 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhH
Q 003645 352 LLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 393 (805)
Q Consensus 352 ~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG 393 (805)
.++.+-..-++.-++..+..+++++++|..++.+|..+..-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 112111222222233344556778999999999888765443
No 68
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.35 E-value=1.3 Score=48.56 Aligned_cols=102 Identities=23% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchhHHHHH---HHHH-HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHH
Q 003645 107 NLGLIFFMFLVGLELDPKSLRQTGKKALGIA---IAGI-SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFP 182 (805)
Q Consensus 107 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia---~~~~-~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~ 182 (805)
.+++.++||-.|++++++++++..|+...+. +..+ +.|+ +++.++..+... + ..+.+|..+-...|.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~---~-----p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRD---L-----FEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCC---C-----HHHHHHHHHHHhcch
Confidence 3566789999999999999988666543322 2222 2333 344444443211 1 124555554332222
Q ss_pred -HHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003645 183 -VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALA 220 (805)
Q Consensus 183 -vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~ 220 (805)
+.+.+.+.+ .+.+.. ++++...++-+++.++.-..
T Consensus 117 g~~S~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 117 IAMVFVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 233344443 344443 55666677887777666443
No 69
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.35 E-value=0.23 Score=53.92 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 112 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 112 ~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
.++|..|-.+|++...+..||...+.+.-+.+..+++.++..++.
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 688999999999998888888888877777777777776665554
No 70
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.14 E-value=0.2 Score=53.39 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH-HHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHH
Q 003645 279 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 357 (805)
Q Consensus 279 ~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~-~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~ 357 (805)
.....+.+++.++++.+++-.++|+++... -++. .-.+.++.+. .+-+.++....|+++|++.+.+. +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~-~lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPS-GLGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcc-cccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 344567888999999999999999999631 1110 0112344443 56667788899999999887642 22222223
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhH
Q 003645 358 LTACLGK-IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 413 (805)
Q Consensus 358 ~~~~~~K-~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~ 413 (805)
...++.- ++.++...++++.++.+++.+|..+++-. .-++..+..+.+..+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~ 133 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF 133 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence 3333333 44445567778999999999999877543 233444455555554443
No 71
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.04 E-value=0.077 Score=50.34 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=82.1
Q ss_pred ceEEEEecc-CCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcccc-CC-------cCccccHHHHHHHHHhhcC
Q 003645 633 SYTITVLFF-GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV-DM-------AGNASMDEEVLSEFKLKTS 703 (805)
Q Consensus 633 ~~~i~v~f~-GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~-~~-------~~~~~~d~~~l~e~~~~~~ 703 (805)
.++|++++. |.+..+.|++.+...+...+..++++.+.+........... .. ...++..++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999988887543321000000 00 0112233455555554432
Q ss_pred CCCCe-EEEEEEecCh-HHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCc-eeEEEEEe
Q 003645 704 RNGSV-RYEERLVRNT-AETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQ 779 (805)
Q Consensus 704 ~~~~v-~~~e~~v~~~-~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq 779 (805)
..+.. .-.+....++ .+.+.......++||+++|.++ ..++.+ =-||-+.+-++.. + .+|||+..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g----~~~l~~----~llGsvs~~v~~~---~~~pVlvv~~ 152 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG----RSGLSR----LLLGSVAEKVLRH---APCPVLVVRS 152 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC----Cccccc----eeeehhHHHHHhc---CCCCEEEEcc
Confidence 22211 1233344455 3544444433359999999986 333332 2478888888763 3 69999874
No 72
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.95 E-value=0.26 Score=58.61 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-CCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHH
Q 003645 273 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 351 (805)
Q Consensus 273 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~ 351 (805)
..+.++...++..++..+|+++++|=.++|+++... -..-. -.+.++.+. .+-+.++.+.+|+.+|+..+......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~la-elGvv~LLF~iGLel~~~~l~~~~~~- 86 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHFS-ELGVVFLMFIIGLELNPSKLWQLRRS- 86 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 345555556667788899999999999999998521 11101 113344443 66666777888999999887542211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q 003645 352 LLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMN 390 (805)
Q Consensus 352 ~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~ 390 (805)
...+....++.-++..+....+++++|..++.+|..+.
T Consensus 87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11111111111121222334456889999888876554
No 73
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.86 E-value=0.29 Score=57.87 Aligned_cols=132 Identities=14% Similarity=0.270 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHH
Q 003645 275 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 353 (805)
Q Consensus 275 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~-~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~ 353 (805)
.++...++++.++..++++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++.+.+|+++|+..+.... ...
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHH
Confidence 44556666778888899999999999999985311 11000 1234444 3555666777889999998775321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChh
Q 003645 354 ALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQ 412 (805)
Q Consensus 354 ~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~ 412 (805)
....+..++.=++.++...+.+++++.+++.+|..++.-.. .++.....+.|.++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~ 145 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQ 145 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCc
Confidence 11111222222334445566778999999999887666332 3445556666666553
No 74
>PRK10490 sensor protein KdpD; Provisional
Probab=95.74 E-value=0.044 Score=68.25 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=85.0
Q ss_pred CcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 003645 459 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 538 (805)
Q Consensus 459 ~e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 538 (805)
..-|||||+.+..+...+++-+..++.. .....+++|+.....+..+ .+..+++.+.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~---~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~~ 306 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR---LGSVWHAVYVETPRLHRLP-------------------EKKRRAILSAL 306 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh---cCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHHH
Confidence 4568999999999999999999999864 5667899998632111100 02234555555
Q ss_pred HHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCC-CceEEE
Q 003645 539 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGIL 616 (805)
Q Consensus 539 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~Ap-csVgIl 616 (805)
+ .+++-+..+... .+ +++++.|.++|++++++.||||-+++.+. + ..+++.+++++.+| -+|=|+
T Consensus 307 ~-lA~~lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 307 R-LAQELGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred H-HHHHcCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEE
Confidence 4 555544443322 23 69999999999999999999998765322 1 12478999999999 565554
No 75
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.61 E-value=0.39 Score=51.78 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHhhccC-CCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhh
Q 003645 275 ATLAAVLAAGFITD----AIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 349 (805)
Q Consensus 275 ~~l~~~l~~~~~ae----~~g~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~ 349 (805)
+++++.....++++ ..++++.+=|.+.|+++.| -....+....-++.. ...++.+=-+..|.++++.++.+ ..
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~-~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILA-LG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHH-hC
Confidence 34444455555555 4677888999999999986 444445555555544 36778888999999999988764 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645 350 WGLLALVILTACLGKIVGTFVVS-LSFKVPLREALALGILMNTKGLVELIVLNIGKD 405 (805)
Q Consensus 350 ~~~~~~i~~~~~~~K~~~~~l~~-~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~ 405 (805)
+......+ +.+..-+..++..+ +.+|++.+.+..++.+.+.=|.-+++...-..+
T Consensus 83 ~~~~~~~~-~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 83 WKGLLIII-IVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK 138 (305)
T ss_pred ccHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc
Confidence 32232333 33333444455555 999999999999999888777666655544443
No 76
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.45 Score=53.58 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC-CC---CchHHHHHHHHHhHHHHHHHHHHHHhccccccccccch
Q 003645 272 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK-EG---PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 347 (805)
Q Consensus 272 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~-~~---~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~ 347 (805)
.+..++..+.....+.+.+|+++++|=.++|+++.. .. ...++..+-+..+ =.-++...+|+.+|+..+...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence 345566666677799999999999999999999985 11 1223333334444 344566789999999888653
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHH
Q 003645 348 QSWGLLALVILTACLGKIVGT--FVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 417 (805)
Q Consensus 348 ~~~~~~~~i~~~~~~~K~~~~--~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~ 417 (805)
.... ........+..=++.. +... ++++++.+++++|..+..-.. -+.+.+..|.|...++....+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~ 153 (397)
T COG0475 86 GRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLI 153 (397)
T ss_pred chhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHH
Confidence 2221 2222222222222222 2223 589999999999887655332 133344445555554444333
No 77
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.52 E-value=0.76 Score=49.96 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=77.1
Q ss_pred chhHHHHHHHHHhhccCCCCchHHHHHHHHHh---HHHHHHHHHHHHhccc-cccccccchhhHHHHHHHHHHHHHHHHH
Q 003645 291 GIHAMFGAFVVGVLVPKEGPFANALVEKVEDL---VSGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIV 366 (805)
Q Consensus 291 g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~---~~~~f~PlfF~~~Gl~-~dl~~l~~~~~~~~~~~i~~~~~~~K~~ 366 (805)
++|+..-+.++|.++..-.-..+++.++...+ ...-+.+..++-+|+. +|++.+.+..++. .+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 56888888888888875444555666654433 3333444445556766 7887776543454 34556677778889
Q ss_pred HHHHHHHhcCCChHHH-HHHHHHHhhhH-HHHHHHHHhhccCCccC
Q 003645 367 GTFVVSLSFKVPLREA-LALGILMNTKG-LVELIVLNIGKDRKVLN 410 (805)
Q Consensus 367 ~~~l~~~~~~~~~~~~-~~lgl~l~~kG-~v~l~l~~~~~~~~~i~ 410 (805)
++++.+++.|+-+-|+ +.-|+.++.+| .-+++++..+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 9999999999755554 45576776665 44566666666655554
No 78
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.46 E-value=0.15 Score=50.97 Aligned_cols=128 Identities=25% Similarity=0.400 Sum_probs=81.5
Q ss_pred HHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCch-----hHHhcchhHHHHHHHHHHH
Q 003645 69 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPK-----SLRQTGKKALGIAIAGISL 143 (805)
Q Consensus 69 v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~-----~l~~~~~~~~~ia~~~~~i 143 (805)
++.+++|+++|-..... ....+...+..+..++|.+|+++--+ .+++.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888432211 11236778889999999999988544 5667778999998888888
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003645 144 PFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALA 220 (805)
Q Consensus 144 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~ 220 (805)
+++.+.+++.++.... ..++.++.-+. =+.....+++|++ +.++|.++.-+=++-+++++++.-+.
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777763221 33444443321 1111222344443 66888888777777777776665543
No 79
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.26 E-value=0.36 Score=57.04 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH--HHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHH
Q 003645 274 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN--ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 351 (805)
Q Consensus 274 ~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~--~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~ 351 (805)
.+++++..+++.+++.+|++.+++-.++|+++.....-.- .-.+-.+. ...+.++++....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 3445555566678888899999999999998874211100 11122333 357888999999999999988864 333
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHhhhHHH
Q 003645 352 LLALVILTACLGKI-VGTFVVSLSFKVPLREALALGILMNTKGLV 395 (805)
Q Consensus 352 ~~~~i~~~~~~~K~-~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v 395 (805)
....+....++.-. +.++...++++++|.+++.+|..+++-...
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 33333333333333 334555667899999999999887766533
No 80
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.24 E-value=5.7 Score=43.21 Aligned_cols=299 Identities=17% Similarity=0.195 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCh--hHH-HHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003645 43 ILQICLVILLTRGLAFILRPLRQPR--VIA-EITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 119 (805)
Q Consensus 43 l~~i~lil~~~~~~~~ll~~l~~P~--iv~-~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 119 (805)
..|.++.++++...++++..+++|. ..| -+++|++.+-.... .-.| ..+..+|....=-.+|.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-------l~~P-------~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-------LPLP-------RGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-------ccCC-------hHHHHHHHHHHHHHHhh
Confidence 5677888888889999999998764 455 66667776621111 1112 45566677777778899
Q ss_pred ccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchH
Q 003645 120 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVG 199 (805)
Q Consensus 120 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g 199 (805)
.+..+.+... ++-+.+.....+++...+...+|++.... .++. ..++ +|. ++-.......+-+|.| .|.+.-
T Consensus 74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~--~~~~-~Ta~-~gs--~PGgas~m~~iA~d~g-Ad~~~V 145 (352)
T COG3180 74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS--ILPG-NTAF-LGS--SPGGASAMVSIAQDYG-ADLRLV 145 (352)
T ss_pred hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc--CCCc-chhh-Hhc--CCchHHHHHHHHHHhC-CChhHH
Confidence 9888776533 33344444555556666666666665542 1111 1121 211 1111111112224444 333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCC------CCcchHHH
Q 003645 200 RMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEG------EPVEETYV 273 (805)
Q Consensus 200 ~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~i~~~~~~~------~~~~e~~~ 273 (805)
.+..+.=+ +.+....-++.+.... .++..+. .+.....+
T Consensus 146 Al~Q~lRv---------------------------------l~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~ 190 (352)
T COG3180 146 ALMQYLRV---------------------------------LFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLIL 190 (352)
T ss_pred HHHHHHHH---------------------------------HHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHH
Confidence 11111111 1011111111111110 0110000 00111113
Q ss_pred HHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchh-hH
Q 003645 274 CATLAAVLAAGFITDAIGI--HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SW 350 (805)
Q Consensus 274 ~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~-~~ 350 (805)
.+.+...++.+.+...+++ ...+|+++.|..+.-.....-++-+-+.-+ -.-+.-..+|.++|-..+.... ..
T Consensus 191 ~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~v----a~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 191 LLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAV----AQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHH----HHHHHHHHHcccccHHHHHHhHhhc
Confidence 4444555555555665555 356777777777763322222222222222 2224456789998866554321 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645 351 GLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 405 (805)
Q Consensus 351 ~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~ 405 (805)
...++.++..++.-...+++..++.+.++.++. ++ .+|-|.-+++....+.+
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~-La--~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY-LA--TSPGGLDTMAAIAAALG 318 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HH--cCCCcHHHHHHHHHHcC
Confidence 223344455555666777788888899888764 33 47888777777666554
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.22 E-value=0.28 Score=52.65 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=83.5
Q ss_pred HHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 003645 285 FITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 364 (805)
Q Consensus 285 ~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K 364 (805)
...+..|.++..=|.+.|+++....+.+.+...-++.. ...++.+=.+..|++++++++.+- .+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHH
Confidence 34455666788899999999986555555555555555 367778888999999999888642 222 233445555667
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhh
Q 003645 365 IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 403 (805)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~ 403 (805)
++.++..++++|++++.++.+|.+-+.=|.-.++...-.
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 778888888999999999999998887786665554433
No 82
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.21 E-value=0.47 Score=46.46 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=72.4
Q ss_pred cccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhcchhHHHHH
Q 003645 61 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIA 137 (805)
Q Consensus 61 ~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~ia 137 (805)
+++++-...|-+++|+++|-. ++..+.. . .....+.+.++|+.+|++.+|++--++-+ |+.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 555566667889999999952 2111111 1 23456789999999999999998877644 45556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHh
Q 003645 138 IAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAE 190 (805)
Q Consensus 138 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 190 (805)
+.-.++|.++++.+++++.+ .+ .....|. +=+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~-----l~---~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFK-----LN---PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CC---HHHHHHHHHccccCcHHHHHHHHh
Confidence 77777777777766663321 11 2333443 3366777777666544
No 83
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.17 E-value=6 Score=43.08 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchh-h
Q 003645 273 VCATLAAVLAAGFITDAIGI--HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-S 349 (805)
Q Consensus 273 ~~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~-~ 349 (805)
+.+.+...++.+++.+.+++ ..++|+++.+.++.-.....-.+-+.+.. +..-+.=.++|.+++...+.... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHH
Confidence 44555566677778887776 47788888777765321111111122222 22223456788998876654322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCC
Q 003645 350 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRK 407 (805)
Q Consensus 350 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~ 407 (805)
+...+...+..+..-.+..++..++.++++.+++ +.+.|-|.-++.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 3334455556666677788888999999888754 345788988888877666544
No 84
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.17 E-value=1.8 Score=43.26 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhccCchhHHhcchhHHHHH--H-HHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhcc-HHH
Q 003645 108 LGLIFFMFLVGLELDPKSLRQTGKKALGIA--I-AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA-FPV 183 (805)
Q Consensus 108 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia--~-~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v 183 (805)
+.+.+.||..|++++++++++..|+...+. + ..+++.=.+++++++.+... ......|..+...+ -+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence 457789999999999999998877654432 2 12222222334344222111 11233333331111 122
Q ss_pred HHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003645 184 LARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG 225 (805)
Q Consensus 184 v~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~ 225 (805)
.+...+.+. +.+.. ++.+...++.+.+.++.-+...+..
T Consensus 74 ~s~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 74 ASNVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHHHHHHh
Confidence 333444332 32332 5566677777777776655554443
No 85
>PRK03818 putative transporter; Validated
Probab=94.83 E-value=0.83 Score=53.64 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=64.2
Q ss_pred hHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHH---hcchhHHHHHHHHHHHH
Q 003645 68 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKALGIAIAGISLP 144 (805)
Q Consensus 68 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~~~ia~~~~~ip 144 (805)
+.|-+++|+++|-..- . ...-. +......+.++|+.+|+|.+|++.-++.+. +.+.+...+++.-.+++
T Consensus 33 ~~g~L~~gl~~G~~~~----~-~~~~~---~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~ 104 (552)
T PRK03818 33 IGGVLFGGIIVGHFVS----Q-FGLTL---DSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG 104 (552)
T ss_pred cHHHHHHHHHHhcccc----c-cCccc---ChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3788999999995210 0 01001 234567799999999999999999887654 44445555666666666
Q ss_pred HHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHH
Q 003645 145 FALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILA 189 (805)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 189 (805)
.++++.+.++++. + .....|+ +=+.|++|.+.....
T Consensus 105 ~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 105 GLVTAILHKLFGI----P-----LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHHHHhCC----C-----HHHHHHHhhccccccHHHHHHHH
Confidence 6665555443322 1 1233333 336677777766543
No 86
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.41 E-value=1.4 Score=48.08 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHH-----hchhHHHHHHHHHhhccCCC--CchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchh
Q 003645 276 TLAAVLAAGFITDA-----IGIHAMFGAFVVGVLVPKEG--PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 348 (805)
Q Consensus 276 ~l~~~l~~~~~ae~-----~g~~~~lgaf~aGl~l~~~~--~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~ 348 (805)
++.+.+.+.++++. .++++.+=|.+.|+++.|-. +..+....-++ +....++-+=.+..|+++++.++.. .
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-V 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-h
Confidence 34444444455443 47888888999999998622 22233222233 3345666777889999999988764 2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhc
Q 003645 349 SWGLLALVILTACLGKIVG-TFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGK 404 (805)
Q Consensus 349 ~~~~~~~i~~~~~~~K~~~-~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~ 404 (805)
.+..+ .+.+..+..-+.. .++..+.+|++++.+..++.+.+.=|.-+++...-..
T Consensus 88 G~~~l-~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 88 GPNEI-VADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 23222 2223333334444 4444588999999999998888777766655544333
No 87
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.87 E-value=1.2 Score=55.00 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCcceEEEEeccCCcChHHHHHHHHHHh--hCCCeEEEEEEEeec
Q 003645 630 SNVSYTITVLFFGGRDDREALACGARMA--EHPGISFIVIRFLLA 672 (805)
Q Consensus 630 ~~~~~~i~v~f~GG~ddreAL~~a~rma--~~~~v~ltvvr~~~~ 672 (805)
.+...||++.+-+-.|-+..+.++.-.. +++...+.++|+++-
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 4456799999887666677777766543 345589999999864
No 88
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.60 E-value=12 Score=40.08 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchh--HHHHHHH-H-HHHHHHHHHHHHHHH
Q 003645 107 NLGLIFFMFLVGLELDPKSLRQTGKK--ALGIAIA-G-ISLPFALGIGSSFLL 155 (805)
Q Consensus 107 ~lgl~~~lF~~Gle~d~~~l~~~~~~--~~~ia~~-~-~~ip~~~~~~~~~~l 155 (805)
-..+.+.||..|+.++.+++++..++ ....+.. . .+.|++. +.++..+
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~ 62 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF 62 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 33488899999999999999887663 3333333 2 3445443 4444443
No 89
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.51 E-value=1.7 Score=52.38 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-h-cCCChHHHHHHHHHHhhhHHH
Q 003645 323 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL-S-FKVPLREALALGILMNTKGLV 395 (805)
Q Consensus 323 ~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~-~-~~~~~~~~~~lgl~l~~kG~v 395 (805)
...+.+++-.+..|++++...+.. .|..+..+++.+...-++.+.+.++ + .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 346777888888999999988874 4444444444444444444544544 3 499999999999999987754
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.49 E-value=0.58 Score=55.06 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcc-----cCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 003645 48 LVILLTRGLAFILRP-----LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 122 (805)
Q Consensus 48 lil~~~~~~~~ll~~-----l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d 122 (805)
+.++++..+++++-| +++-.+.|-+++|+++|..+.. .| +.+.++|+++|+|.+|++.-
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i~-------~~v~~~gl~lFvy~vG~~~G 76 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------ID-------PGVKAVFFALFIFAIGYEVG 76 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------CC-------hHHHHHHHHHHHHHhhhccC
Confidence 334444445555544 5566678999999999964321 11 23678999999999999999
Q ss_pred chhHHhcchhHHHHHHHHHH
Q 003645 123 PKSLRQTGKKALGIAIAGIS 142 (805)
Q Consensus 123 ~~~l~~~~~~~~~ia~~~~~ 142 (805)
++-++.-+|+.+...+.+++
T Consensus 77 p~Ff~~l~~~g~~~~~~a~~ 96 (562)
T TIGR03802 77 PQFFASLKKDGLREIILALV 96 (562)
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 98776555544444444433
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.41 E-value=0.33 Score=57.47 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=79.3
Q ss_pred CCcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003645 458 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 537 (805)
Q Consensus 458 ~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 537 (805)
...-|||+|+.+......+++-+..++.. .....+++|+..-..+..+. ...+++...
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~---~~a~~~av~v~~~~~~~~~~-------------------~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR---LHAKWTAVYVETPELHRLSE-------------------KEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH---hCCCeEEEEEeccccccccH-------------------HHHHHHHHH
Confidence 34469999999999999999998888864 44556888886432211110 112233333
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCC
Q 003645 538 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 611 (805)
Q Consensus 538 f~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~Apc 611 (805)
.+.+++-+-. ..+..+ .++.+.|.++|++.+++-||+|-+.+.+....+ .+++.+++++++|-
T Consensus 304 -~~Lae~lGae--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~ 366 (890)
T COG2205 304 -LRLAEELGAE--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPG 366 (890)
T ss_pred -HHHHHHhCCe--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCC
Confidence 3333332222 223334 699999999999999999999987664432222 25788899998884
No 92
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.32 E-value=0.47 Score=45.72 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcch----hHHHHHHHHH
Q 003645 66 PRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGK----KALGIAIAGI 141 (805)
Q Consensus 66 P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~----~~~~ia~~~~ 141 (805)
-...|-+++|+++|- ++...+..-. .| ......+.++|+.+|++.+|++--.+-+..-.+ ....++..-.
T Consensus 22 G~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 22 GNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred cccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 336788999999995 3332221111 12 235678899999999999999998876543333 2233333334
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHH-HhhccHHHHHHHHHhc
Q 003645 142 SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA-LSITAFPVLARILAEL 191 (805)
Q Consensus 142 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el 191 (805)
++|.++++.+...+ +..+ .....|+. =+.|++|.+....+..
T Consensus 96 ~~~~~~~~~~~~~~---~~~~-----~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 96 VVPTLLVAVALIKL---LRIN-----YALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHH---hCCC-----HHHHHHHHhccccChHHHHHHHHHh
Confidence 44444333333322 2111 23344443 4778888877765543
No 93
>PRK04972 putative transporter; Provisional
Probab=92.85 E-value=0.77 Score=53.97 Aligned_cols=117 Identities=26% Similarity=0.388 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH-HcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003645 48 LVILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 126 (805)
Q Consensus 48 lil~~~~~~~~l-l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 126 (805)
+.+.+..+++.+ ++++++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-+.-+
T Consensus 19 ~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp~F~ 82 (558)
T PRK04972 19 VVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGPNFF 82 (558)
T ss_pred HHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333344444433 3445666677999999999963221 11 224589999999999999988765
Q ss_pred H---hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHH
Q 003645 127 R---QTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILA 189 (805)
Q Consensus 127 ~---~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 189 (805)
. +.+.+...+++.-+++++++++.+.++++. ++ ....|+ +=+.|++|.+.....
T Consensus 83 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 83 SIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW----DI-----GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----CH-----HHHHHHhhccccCcHHHHHHHH
Confidence 4 444455556666666666666555544322 11 223332 235677676666544
No 94
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.42 E-value=1.4 Score=51.68 Aligned_cols=116 Identities=19% Similarity=0.318 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHH--HHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHH
Q 003645 276 TLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA--LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 353 (805)
Q Consensus 276 ~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~--l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~ 353 (805)
.++.+.....+++.+++++.++-+++|+++.. .+.... +.. + ....+++|......|+++|+..+.. .+..+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~-~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGL-AGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHh-ccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 34444445567777888888888888887752 111100 111 1 1235788999999999999988864 33333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHH
Q 003645 354 ALVILTA-CLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 354 ~~i~~~~-~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l 397 (805)
..+.+.. ++.-++.++...+..++||..++.+|.++++...+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 3332333 3333333444445679999999999999998876553
No 95
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.04 E-value=42 Score=42.31 Aligned_cols=133 Identities=8% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCcceEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 003645 458 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 537 (805)
Q Consensus 458 ~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 537 (805)
+=.-++|+.+.+|++.+.+++++..+.+. ..+ ..+.|+++.+.+... .+ .++..+.
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~~---~gl-~i~~~v~~~~~~~~~----~~----------------~~~~~~~ 628 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTKG---KGL-MICGSVIQGPRLECV----KE----------------AQAAEAK 628 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhccC---CcE-EEEEEEecCchhhhH----HH----------------HHHHHHH
Confidence 33468999999999999999999999853 343 456688875432111 00 1122222
Q ss_pred HHHhhhccCeEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCc
Q 003645 538 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 612 (805)
Q Consensus 538 f~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e-----~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~Apcs 612 (805)
.+.+-++.++..=..+.++ +++.+++.++.+. .+.+.++|||...|+.+... .-..|-++.+... ++...
T Consensus 629 ~~~~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a~-~~~~~ 703 (953)
T TIGR00930 629 IQTWLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDAF-DAHLA 703 (953)
T ss_pred HHHHHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHHH-HcCCc
Confidence 3333333344433334445 5999999999987 56899999999888754321 1123444444443 44444
Q ss_pred eEEEecCCC
Q 003645 613 VGILIDRGL 621 (805)
Q Consensus 613 VgIlvdrg~ 621 (805)
+.+-|+.
T Consensus 704 --v~i~r~~ 710 (953)
T TIGR00930 704 --VVVVRNS 710 (953)
T ss_pred --EEEEccc
Confidence 4555653
No 96
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.45 E-value=1.8 Score=51.02 Aligned_cols=116 Identities=22% Similarity=0.329 Sum_probs=72.8
Q ss_pred ccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhcchhHHHHHH
Q 003645 62 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIAI 138 (805)
Q Consensus 62 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~ia~ 138 (805)
++.+-...|-+++|+++|- +++..+... -.| ......+.++|+.+|++.+|++--++.+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFG-NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcce-ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3444556788999999985 332221111 122 3356679999999999999998887644 555566666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHhc
Q 003645 139 AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAEL 191 (805)
Q Consensus 139 ~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 191 (805)
.-.++|.++++.++.++... ......|+ +-+.|++|.+.......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 77777777776666433221 12344444 35778888877765443
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.16 E-value=11 Score=36.46 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhchh--HHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchh-hHHHH
Q 003645 277 LAAVLAAGFITDAIGIH--AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGLL 353 (805)
Q Consensus 277 l~~~l~~~~~ae~~g~~--~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~-~~~~~ 353 (805)
+......+++.+.+|+. .++|+++++.++.-.....-++-+.+... -.-+.=..+|.+++...+.... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555566677888875 88899888887763221111222222222 2334457789999877665432 34434
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645 354 ALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 405 (805)
Q Consensus 354 ~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~ 405 (805)
....+..++.-++..++..+..++++.+++ ++ ..|-|.-++.+.....+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHhC
Confidence 455566666677888888999999998875 33 46888777777655443
No 98
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.96 E-value=26 Score=37.91 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=58.7
Q ss_pred HcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHH
Q 003645 60 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 139 (805)
Q Consensus 60 l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 139 (805)
....+.|..+--|+.||++|.. ..... ... ..-...-..+-++|.+ +.|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~---~~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPA---QTS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchh---hhc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 4456799999999999999932 21110 000 0111223455666666 568999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003645 140 GISLPFALGIGSSFLLR 156 (805)
Q Consensus 140 ~~~ip~~~~~~~~~~l~ 156 (805)
....++++++.++.+++
T Consensus 102 ~l~~t~~~~~~lg~~lg 118 (334)
T COG2855 102 TLSSTFLFAYFLGKLLG 118 (334)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777777776666443
No 99
>PRK10490 sensor protein KdpD; Provisional
Probab=90.78 E-value=1.1 Score=56.17 Aligned_cols=124 Identities=9% Similarity=0.033 Sum_probs=79.1
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEE
Q 003645 632 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 711 (805)
Q Consensus 632 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~ 711 (805)
...||+|...|+|..+..+..|.|||++-+++++++++.+++.... ..+..+.+. +.+ ++.++.. . ++.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-----~~~~~~~l~-~~~-~lA~~lG--a--~~~ 317 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-----PEKKRRAIL-SAL-RLAQELG--A--ETA 317 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-----CHHHHHHHH-HHH-HHHHHcC--C--EEE
Confidence 4579999999999999999999999999999999999986532110 011111111 222 2333432 1 244
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCceeEEEE
Q 003645 712 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 777 (805)
Q Consensus 712 e~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvv 777 (805)
...-+|.++++....+..+.+.+|+|+++.+ .| + --|.+-|-|....-+ .-|.||
T Consensus 318 ~~~~~dva~~i~~~A~~~~vt~IViG~s~~~-------~~--~-~~~s~~~~l~r~~~~-idi~iv 372 (895)
T PRK10490 318 TLSDPAEEKAVLRYAREHNLGKIIIGRRASR-------RW--W-RRESFADRLARLGPD-LDLVIV 372 (895)
T ss_pred EEeCCCHHHHHHHHHHHhCCCEEEECCCCCC-------CC--c-cCCCHHHHHHHhCCC-CCEEEE
Confidence 4455666666555555555999999998722 24 1 136778877743322 467777
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.38 E-value=2.1 Score=41.47 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcccCCC--hhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003645 49 VILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 126 (805)
Q Consensus 49 il~~~~~~~~ll~~l~~P--~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 126 (805)
.+.++.+.+.+++++|+| .++|-++++.++.-. +..+ ...-..+.+++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE-----------ITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677888999999998 666766666665522 1110 1112356677888888899999999998
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003645 127 RQTGKKALGIAIAGISLPFALGIGSSFLLRETI 159 (805)
Q Consensus 127 ~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~ 159 (805)
++..+.. ..++...+..+.++.+.++++.+..
T Consensus 70 ~~~~~~~-~~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRLW-PAALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765543 3444555555666666666666543
No 101
>COG2985 Predicted permease [General function prediction only]
Probab=88.45 E-value=1.7 Score=48.61 Aligned_cols=78 Identities=28% Similarity=0.458 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccCchh---HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHH
Q 003645 107 NLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFP 182 (805)
Q Consensus 107 ~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~ 182 (805)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+..+++.+...++ ++. .+..|. +-+.|+.|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~--~~~---~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG--IDL---GLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC--CCH---HHhhhhhcccccCCc
Confidence 8999999999999998764 566666666665543 3444445555555442 221 222222 22445554
Q ss_pred HH---HHHHHhcCc
Q 003645 183 VL---ARILAELKL 193 (805)
Q Consensus 183 vv---~~iL~el~l 193 (805)
.. ..+++|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 44 456777774
No 102
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.18 E-value=7.2 Score=43.74 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003645 44 LQICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 121 (805)
Q Consensus 44 ~~i~lil~~~~~~~~ll~~--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 121 (805)
..+.+.+.+++.+...++. +.+|..++-+++|+++.+.. +..+.. .-..+..+.++++.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-----~~~~~~--~~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-----SFKKFP--WVAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-----HHhCcc--ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555566666666664 67999999999999998621 111110 11234899999999999998888899
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHH-HHHHHhhhccCCchh-HHHHHHHHHHhh--ccHHHHHHHHHhcCccCCc
Q 003645 122 DPKSLRQTGKKALGIAIAGISLPFALGIGS-SFLLRETISKGVDST-SFLVFMGVALSI--TAFPVLARILAELKLLTAD 197 (805)
Q Consensus 122 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~-~~~l~~~~~~~~~~~-~~~l~lg~~ls~--Ts~~vv~~iL~el~l~~s~ 197 (805)
++..+....-..+.+.+.++++..+..+.+ ...+++.+ ... ..+-..|..+-. |+.+-...+-++.|-.+.-
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~y----daaV~~ag~~G~~lGatptaianm~av~~~yg~s~~a 370 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDY----DAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQA 370 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchH----HHHHHhcccccccccchHHHHHHHHHHHhccCCCCcc
Confidence 999999999999999999888776544333 33333222 110 111234444433 3333333334444533333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003645 198 VGRMAMSAAAVNDVAAWILLALA 220 (805)
Q Consensus 198 ~g~l~ls~a~i~D~~~~~ll~i~ 220 (805)
+=-.=+-.+.+-|+....++...
T Consensus 371 f~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 371 FIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred eehhhhHHHHHHHHhhHHHHHHH
Confidence 33344466777787776665543
No 103
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=87.53 E-value=6.4 Score=39.01 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=66.4
Q ss_pred HHHHHHHHHHccc---CCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHH-------HHHHHHhhc
Q 003645 51 LLTRGLAFILRPL---RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLI-------FFMFLVGLE 120 (805)
Q Consensus 51 ~~~~~~~~ll~~l---~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~-------~~lF~~Gle 120 (805)
+..++.+++.||+ |++.----|+.|+++.-.+ |.... -.+....+..++-+|++ |-.-....|
T Consensus 23 ~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~ 95 (254)
T TIGR00808 23 LMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE 95 (254)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence 3334445555554 6777666788888876321 11100 01233345555555544 234466889
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 158 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 158 (805)
.|.+++||.+..-..--+.+..+||+.|..+++.+++.
T Consensus 96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999888777889999999999999988753
No 104
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=86.19 E-value=44 Score=34.45 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhH
Q 003645 314 ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 393 (805)
Q Consensus 314 ~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG 393 (805)
.+..-+.+-+-.+-.|+| =+...+.. .|..+.+-++++.+.-+++++..++.++.+.. +-..+.+|.
T Consensus 66 ~l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKS 132 (232)
T PRK04288 66 IISFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQA 132 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHh
Confidence 334445555556666766 23444442 44445555566666778888888999988753 333457899
Q ss_pred HHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 394 LVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 394 ~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
...-+...+..+.|-+..-.-..++++-++-..+.+++++++
T Consensus 133 VTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 133 ATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888877654444444444444444444555543
No 105
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=86.09 E-value=5.1 Score=44.78 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHH-HHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 294 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 372 (805)
Q Consensus 294 ~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~Plf-F~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~ 372 (805)
+++...++|.+..+..-+.++-.+.+..++..+++|.+ |..++-..+...+.+ ++.+.+...+..+.-++..++..
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566766666566777888889999999999998 445454444443332 22233333333333455556666
Q ss_pred HhcCCChHHHHH--HHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHHhch
Q 003645 373 LSFKVPLREALA--LGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 438 (805)
Q Consensus 373 ~~~~~~~~~~~~--lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~ 438 (805)
++++.+.+++.. ++...+.-|.+.+-+....+.. +.....++..++..++.-++...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~~ 147 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLES 147 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence 767776655433 3333455666666665544433 222233333444444455555444443
No 106
>PRK04972 putative transporter; Provisional
Probab=85.23 E-value=8.2 Score=45.50 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchh---HHhcchhHHHHHHHH
Q 003645 64 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAG 140 (805)
Q Consensus 64 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~ 140 (805)
++-.--|-+++|+++|- +++..+.... .| .....++.++|+.+|+..+|+.--.+. +++.+.+.+.++..-
T Consensus 409 ~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~ 482 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIV 482 (558)
T ss_pred eccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 34445678999999994 3333322211 22 245678999999999999999877654 445566666777777
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHh
Q 003645 141 ISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAE 190 (805)
Q Consensus 141 ~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 190 (805)
.++|.++++.+++++.+. .....+|+ +-+.|++|.+......
T Consensus 483 t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 483 SLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 778877777777554332 12344444 4577888877666543
No 107
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=83.77 E-value=23 Score=38.61 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=66.9
Q ss_pred cCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHH-
Q 003645 63 LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGI- 141 (805)
Q Consensus 63 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~- 141 (805)
++.|.+++.+ +|+++...... +|..-.+.++.+++...-+-||..|+.++.+.+++.++........-.
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 4678777654 45776643221 344456789999999999999999999998888777666665555544
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhc
Q 003645 142 SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAEL 191 (805)
Q Consensus 142 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 191 (805)
+.|.+. +.+...+.. + ....-..+..+.+.+++...++.+.
T Consensus 250 l~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 250 VQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHH
Confidence 444443 333333321 1 1223344444555555555555543
No 108
>PRK03818 putative transporter; Validated
Probab=83.75 E-value=26 Score=41.27 Aligned_cols=106 Identities=22% Similarity=0.331 Sum_probs=68.1
Q ss_pred hHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh----cchhHHHHHHHHHHH
Q 003645 68 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ----TGKKALGIAIAGISL 143 (805)
Q Consensus 68 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~----~~~~~~~ia~~~~~i 143 (805)
.-|-+++|+++|- ++...+.. +-.| ......+.++|+.+|+..+|++--.+-+.. .+.+...+++.-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578999999995 23322211 1123 234678899999999999999887765543 345566677777777
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHH-HHhhccHHHHHHH
Q 003645 144 PFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARI 187 (805)
Q Consensus 144 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 187 (805)
|.++++.++.++.+. .....+|+ +-+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 877777776444321 12344443 4577888877665
No 109
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.61 E-value=9.9 Score=38.09 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHH
Q 003645 353 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 401 (805)
Q Consensus 353 ~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~ 401 (805)
...+-+..+++-++++++.+++.++|++|++.++.+++--..-...+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4456677788899999999999999999999998877665554444443
No 110
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=83.23 E-value=58 Score=33.34 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 003645 312 ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNT 391 (805)
Q Consensus 312 ~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~ 391 (805)
++.+..-+.+-+-.+-.|+| =+++.+. ..|..+..-++++.+.-++.+++.+++++.+.. +..+ +-+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~S--l~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILS--LLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHH--hcc
Confidence 34455556666656777776 2344454 356556666667777778888899999998744 3333 578
Q ss_pred hHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 392 KGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 392 kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
|....-+...+..+.|-+++-+-..++++-++.+.+.+++.+++
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888888888888776555555555555555555555554
No 111
>COG3329 Predicted permease [General function prediction only]
Probab=83.05 E-value=34 Score=36.27 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhhccC---CCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 003645 292 IHAMFGAFVVGVLVPK---EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGT 368 (805)
Q Consensus 292 ~~~~lgaf~aGl~l~~---~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~ 368 (805)
+++.+.-|+.|++++. +-.+.+.+.+.+.. .++--.-.--|+.+.-+.+.. .+..++.-+.+.++.-++..
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl----yLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL----YLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHH----HHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 4788888999988873 11122222222211 111111122344444444432 33334445556666677788
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHH
Q 003645 369 FVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 417 (805)
Q Consensus 369 ~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~ 417 (805)
++..++.+++..|+...+-..+.-..+.++.+...++.--+..+-|...
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 8888888999999999988888888888888877766655666666554
No 112
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=82.89 E-value=9.3 Score=40.97 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=54.1
Q ss_pred hHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003645 68 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 147 (805)
Q Consensus 68 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~ 147 (805)
.+--++.|+++|+..-+ .+ +.++.=..+++.++.|..|.++|++++.+.+.+.+.+++..+.+++..
T Consensus 169 lilpILiGmilGNld~~-~~------------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDPD-MR------------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccchh-hH------------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 45557788888862111 11 122222233788899999999999999999999999999888888887
Q ss_pred HHHHHHHH
Q 003645 148 GIGSSFLL 155 (805)
Q Consensus 148 ~~~~~~~l 155 (805)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 77666555
No 113
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=81.83 E-value=5 Score=42.15 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=63.4
Q ss_pred EeccCCcChHHHHHHHHHHhhCC-CeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEE-E--
Q 003645 638 VLFFGGRDDREALACGARMAEHP-GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-R-- 713 (805)
Q Consensus 638 v~f~GG~ddreAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e-~-- 713 (805)
+.+.=.|.|+-|++.|.|+.++. +.++|++.+-+++.. +++.+++....- -++....+ .
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------------~~~~lr~aLAmG--aD~avli~d~~~ 92 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------------NAKGRKDVLSRG--PDELIVVIDDQF 92 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------------hHHHHHHHHHcC--CCEEEEEecCcc
Confidence 45555799999999999999875 489999998764321 134555554442 22322222 1
Q ss_pred EecChHHHHHHHHhc-c--CCCEEEEccCC---C-chhccccccCCCCCccccchhh
Q 003645 714 LVRNTAETIAVIREV-S--RCNLLLVGRMP---D-GELALALSTRSDCLELGPVGSL 763 (805)
Q Consensus 714 ~v~~~~e~~~~i~~~-~--~~DLiiVGr~~---~-~~~~~gl~~w~e~~eLG~igd~ 763 (805)
.-.|...|..+|.+. . +|||++-|+.. + +.+-.-+.+|-..|-+..+-++
T Consensus 93 ~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 93 EQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 112444555544322 1 29999999986 1 2222223344455666655554
No 114
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=80.02 E-value=36 Score=38.75 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcc-CC-CCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHH
Q 003645 274 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVP-KE-GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 351 (805)
Q Consensus 274 ~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~-~~-~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~ 351 (805)
.+++.+..+++.+++.+..+.+.-..+.|++.. .. ........-.-+.+. .+++|+-....|+++|...+.+ .|.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~--~~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRR--VWR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHH--hHH
Confidence 344555555666666666655555555555443 10 111111111112222 6777888888899999988874 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhHHHHH
Q 003645 352 LLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 352 ~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~kG~v~l 397 (805)
.+..+.....+...++.....++. ++|+..++.+|..+++-.-+.+
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 444444445555555555555554 8899999999998888776554
No 115
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=79.47 E-value=2.1 Score=36.51 Aligned_cols=48 Identities=21% Similarity=0.062 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhH-HHHHHHhhcCCCce
Q 003645 560 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAPCSV 613 (805)
Q Consensus 560 ~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~-~vn~~Vl~~ApcsV 613 (805)
.+.+.+.+.|++.++|.|++|.|.....+... .+ +...++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCce
Confidence 78899999999999999999999775444333 22 45668899999996
No 116
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=78.64 E-value=26 Score=39.16 Aligned_cols=113 Identities=13% Similarity=0.227 Sum_probs=69.3
Q ss_pred HHHHHHhchhHHHHHHHHHhhccCCCCchHHHH-HHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHH
Q 003645 284 GFITDAIGIHAMFGAFVVGVLVPKEGPFANALV-EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACL 362 (805)
Q Consensus 284 ~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~-~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~ 362 (805)
+-++..+|....+=-...|++...++-.+-..- ..+.+++..+-+.+...--|++++++.+.. ..|+...+..+..++
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~ 101 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHH
Confidence 334455566555555556666654221111111 245555556666666677889998887764 345544444445555
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHH
Q 003645 363 GKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 363 ~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l 397 (805)
.-.+....+.+.++++|-|++.+|.+.+..-..+.
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 55666677788899999999999998766554443
No 117
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=77.81 E-value=11 Score=37.33 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=32.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 671 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 671 (805)
||++.+.||.|.--++.++.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999998877778888888864
No 118
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=77.04 E-value=12 Score=39.54 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCC---chHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhh
Q 003645 273 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP---FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 349 (805)
Q Consensus 273 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~---~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~ 349 (805)
+...+.++|+.+.+++.+.++|..|=.++|.+.....| -.+.+...+.++. .-+....+|+++.+.++..-..
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 44567778888899999999999999999999863332 2355665666654 2345567899988877654334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHH
Q 003645 350 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 350 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l 397 (805)
|.+-..+. -+..-..-.+...+..++++...+..|+.++.-.++-+
T Consensus 87 iAipgAl~--qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALA--QIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHH--HHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 43211111 11111122334566778999999999998887665443
No 119
>PRK12342 hypothetical protein; Provisional
Probab=76.63 E-value=5 Score=42.06 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=56.2
Q ss_pred EeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEE-EE--
Q 003645 638 VLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL-- 714 (805)
Q Consensus 638 v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e-~~-- 714 (805)
+++.=+|.|+-|++.|.|+.+ .+.++|++.+-++... +++.+.+....- -++....+ ..
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~---------------~~~l~r~alamG--aD~avli~d~~~~ 90 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQ---------------NSKVRKDVLSRG--PHSLYLVQDAQLE 90 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHh---------------HHHHHHHHHHcC--CCEEEEEecCccC
Confidence 456667999999999999995 5789999998764321 122445544442 22222221 11
Q ss_pred ecChHHHHHHH----HhccCCCEEEEccCC-C------chhccccccC
Q 003645 715 VRNTAETIAVI----REVSRCNLLLVGRMP-D------GELALALSTR 751 (805)
Q Consensus 715 v~~~~e~~~~i----~~~~~~DLiiVGr~~-~------~~~~~gl~~w 751 (805)
-.|.-.|..++ +.. +||||+-|+.. + ++++.++.+|
T Consensus 91 g~D~~ata~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 91 HALPLDTAKALAAAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 12443334444 332 39999999986 1 3455555544
No 120
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=76.56 E-value=18 Score=39.37 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCh--hHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003645 44 LQICLVILLTRGLAFILRPLRQPR--VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 121 (805)
Q Consensus 44 ~~i~lil~~~~~~~~ll~~l~~P~--iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 121 (805)
.++.+++.++...+++++++|+|. ++|-++.+.++.-.+... .-+| +.+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~------~~~P-------~~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS------FSLP-------PWLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC------CCCC-------HHHHHHHHHHHHHHHHccc
Confidence 345666677888999999999864 466666666555321111 1112 3455666677778999999
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003645 122 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 158 (805)
Q Consensus 122 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 158 (805)
+.+.+++..| .+..++...+.-+.++.+.++.+...
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877654 44455555555555555555555543
No 121
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=75.93 E-value=0.87 Score=50.89 Aligned_cols=113 Identities=21% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--HHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHH
Q 003645 277 LAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA--NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 354 (805)
Q Consensus 277 l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~--~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~ 354 (805)
++..+....+.+.++++..+|-.++|+++.. .... +.-.+.++.+ ..+.+++.....|+++|...+.. .+....
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~-~~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~ 80 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGP-SGLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRAL 80 (380)
T ss_dssp --------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG------------
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhh-hhhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--cccccc
Confidence 3334444557889999999999999999974 2222 1112344555 47778888889999999988864 233333
Q ss_pred HHHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHhhhH
Q 003645 355 LVILTACLGKIVG-TFVVSL---SFKVPLREALALGILMNTKG 393 (805)
Q Consensus 355 ~i~~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lgl~l~~kG 393 (805)
...+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ---------------------------------TTHHHHTT--
T ss_pred ccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333334444444 444443 47889999999988776544
No 122
>COG2431 Predicted membrane protein [Function unknown]
Probab=75.89 E-value=46 Score=34.96 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccC---chhHH-hcchhHHHHHHHHHH
Q 003645 67 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD---PKSLR-QTGKKALGIAIAGIS 142 (805)
Q Consensus 67 ~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 142 (805)
.+.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ....+ .-.|+.+.+++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56677888888884321111 12456678899999999999887 22111 223667777776666
Q ss_pred HHHHHHHHHHHHHH
Q 003645 143 LPFALGIGSSFLLR 156 (805)
Q Consensus 143 ip~~~~~~~~~~l~ 156 (805)
-..+-|.+.++++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665555554
No 123
>PRK09903 putative transporter YfdV; Provisional
Probab=75.76 E-value=45 Score=36.16 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=61.2
Q ss_pred cCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHH-HH
Q 003645 63 LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA-GI 141 (805)
Q Consensus 63 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~-~~ 141 (805)
++-|.+++.++ |+++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+. -.
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 34577777554 555542 221 2354456789999999999999999999877665443 333333333 23
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhc
Q 003645 142 SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAEL 191 (805)
Q Consensus 142 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 191 (805)
+.|++. +...+.+. . + ....-...+++.+..++.+.++.+.
T Consensus 240 ~~P~i~-~~~~~~~~--l--~----~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGMACH--L--N----SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHHHcC--C--C----cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 455543 22222221 1 1 1233445555555566666666554
No 124
>PRK10711 hypothetical protein; Provisional
Probab=75.65 E-value=1e+02 Score=31.80 Aligned_cols=105 Identities=14% Similarity=0.256 Sum_probs=61.4
Q ss_pred HHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHH
Q 003645 318 KVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 318 kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l 397 (805)
-+.+-+-.+-.|+| =+...+. ..|..+.+-+.++.+.-++.+++.++.++.+.. + ...+.+|....-
T Consensus 65 lLgPAtVALAvPLY-------~q~~~lk--~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~--~~Sl~pkSVTtP 131 (231)
T PRK10711 65 LLQPAVVALAFPLY-------EQLHQIR--ARWKSIISICFIGSVVAMVTGTAVALWMGATPE--I--AASILPKSVTTP 131 (231)
T ss_pred hhhHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHhhhhhhHH
Confidence 34444445566665 2233344 244445555566666778888888999988644 2 333578998888
Q ss_pred HHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 398 IVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 398 ~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
+...+..+.|-+.+-.-..++++-++-..+.+++++++
T Consensus 132 IAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 132 IAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888776543333333344434334444455443
No 125
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=75.18 E-value=7.1 Score=42.37 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=69.2
Q ss_pred HhHHHHHHHHHHHHhccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHH
Q 003645 321 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV-ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIV 399 (805)
Q Consensus 321 ~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i-~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l 399 (805)
.+.++++=|+.|.-+|..+|+..+.. ..+. .++ -..+-++- ..+++.+..+|++.+|+-.+|.+=+.-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgplla-nP~~--~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILA-RPWA--SITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHh-ChHH--HHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 34557888889999999999987653 1221 111 12333333 3355666778999999999999777777666666
Q ss_pred HHhhc-c-CCccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhh
Q 003645 400 LNIGK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRA 442 (805)
Q Consensus 400 ~~~~~-~-~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~ 442 (805)
.+... + .+.+.-..|+-|- +.=.+-||+.+.+-.+++|.
T Consensus 177 s~kLAp~Llg~IaVAAYsYMa----LVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYLS----LTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHHH----HHhcccchHHHhhcCHHHHc
Confidence 54322 1 1223333344332 23456788888876544443
No 126
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=73.61 E-value=18 Score=39.07 Aligned_cols=74 Identities=28% Similarity=0.473 Sum_probs=42.0
Q ss_pred HHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH-
Q 003645 69 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL- 147 (805)
Q Consensus 69 v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~- 147 (805)
+|-++.|.+-||.+...+.+|+..+|. =-+.+||...|++- .++++..++..+.+...+++.|.+-
T Consensus 184 lGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 455566666677666655555444432 22556777788755 3344444455555666677777654
Q ss_pred --HHHHHHHH
Q 003645 148 --GIGSSFLL 155 (805)
Q Consensus 148 --~~~~~~~l 155 (805)
|..+++++
T Consensus 251 ~ig~~lg~~~ 260 (327)
T PF05982_consen 251 LIGIGLGWLL 260 (327)
T ss_pred HHHHHHHHHh
Confidence 44444444
No 127
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=72.78 E-value=38 Score=37.76 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHc--ccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCc
Q 003645 46 ICLVILLTRGLAFILR--PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP 123 (805)
Q Consensus 46 i~lil~~~~~~~~ll~--~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~ 123 (805)
+.+.+.++..+...++ .+.+|..++-+++|+++.... +..+.. .-+.+..+.++++.+-+++..+=..+++
T Consensus 226 i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-----~~~~~~--~id~~~i~~I~~~sL~~fl~~almsl~l 298 (368)
T PF03616_consen 226 ILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-----DKTGKY--KIDRKTIDRISGISLDLFLAMALMSLKL 298 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-----HHhCcc--cCCHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3333444444444444 357899999999999997521 111111 1245678999999999999888889999
Q ss_pred hhHHhcchhHHHHHHHHHHHHHHHH
Q 003645 124 KSLRQTGKKALGIAIAGISLPFALG 148 (805)
Q Consensus 124 ~~l~~~~~~~~~ia~~~~~ip~~~~ 148 (805)
..+.+..-+.+.+-+.+.++..++.
T Consensus 299 ~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 299 WVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777677766655443
No 128
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=71.23 E-value=1.3e+02 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 115 FLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 115 F~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
|..=+--+.+.+||+|+..+.-.+.+.++.++.++.++.+++
T Consensus 75 lAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g 116 (230)
T COG1346 75 LAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFG 116 (230)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444678899999999887777788877777777777765
No 129
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=70.80 E-value=6.2 Score=44.82 Aligned_cols=83 Identities=20% Similarity=0.369 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCccEEEec---CccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCC--C--CcccccCCcc
Q 003645 561 MHEDICTTAESKRAAIIILP---FHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLG--G--TTQVSASNVS 633 (805)
Q Consensus 561 ~~~dI~~~A~e~~a~lIilp---~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~--~--~~~~~~~~~~ 633 (805)
-.++||.+|+++++|+|++| ||.+..+... -+..++.+-+.-+-+-||..-++-|.+.. . +.+.--.+..
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~---L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpN 116 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKT---LHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPN 116 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHH---HHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCC
Confidence 35799999999999999999 7765433221 12335555666677889999999888632 1 1111122234
Q ss_pred eEEEEeccC--CcCh
Q 003645 634 YTITVLFFG--GRDD 646 (805)
Q Consensus 634 ~~i~v~f~G--G~dd 646 (805)
.+|.+|+++ |.||
T Consensus 117 lNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 117 LNISIPVFSIHGNHD 131 (646)
T ss_pred cceeeeeEEeecCCC
Confidence 577777763 4444
No 130
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=70.68 E-value=1.3e+02 Score=30.89 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=58.3
Q ss_pred HHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHH
Q 003645 319 VEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELI 398 (805)
Q Consensus 319 l~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~ 398 (805)
+.+-+-.+-.|+| =+...+.. .|..+...+.++.+.-+..+++.++.++.+.. ... .+.+|....-+
T Consensus 65 LgPAtVALAvPLY-------~~~~~lk~--~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpi 131 (226)
T TIGR00659 65 LGPAVVALAIPLY-------KQLPQIKK--YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPI 131 (226)
T ss_pred hHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHH
Confidence 3444445556655 22333432 34444444455556667778888889998733 333 45789988877
Q ss_pred HHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 399 VLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 399 l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
...+..+.|-..+-.-..++++-++-..+.+++.+++
T Consensus 132 Am~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 132 AMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7788887776543333333334334334444444443
No 131
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=69.46 E-value=63 Score=35.40 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHcccCCChh--HHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCc
Q 003645 46 ICLVILLTRGLAFILRPLRQPRV--IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP 123 (805)
Q Consensus 46 i~lil~~~~~~~~ll~~l~~P~i--v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~ 123 (805)
+.+.+.++.+.+.+.+++|+|.. .+-++.|.++.-.+ + + ..+.-..+..++..++.-.+|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~-~-----------~~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-G-I-----------TIQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-c-e-----------eeeCCHHHHHHHHHHHHHHHcccccH
Confidence 66677777788899999999863 23333333332111 1 1 11122344577788888999999999
Q ss_pred hhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003645 124 KSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 158 (805)
Q Consensus 124 ~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 158 (805)
..++...|....+. ...+.-+......++++...
T Consensus 257 ~~l~~~~r~~~~~~-v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 257 SILREAKRLLPAIL-VSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HHHHHhHhhcchHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99887666544332 22222233344455555443
No 132
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=69.40 E-value=18 Score=38.02 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=65.8
Q ss_pred EeccCCcChHHHHHHHHHHhh-CCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEE---E
Q 003645 638 VLFFGGRDDREALACGARMAE-HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE---R 713 (805)
Q Consensus 638 v~f~GG~ddreAL~~a~rma~-~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e---~ 713 (805)
++..=.|.|+-|++.|.|+.+ ..+.++|++.+-++.. ++.+.+.... +-++....+ .
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------~~~lr~aLAm--GaDraili~d~~~ 91 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------EEALREALAM--GADRAILITDRAF 91 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------HHHHHHHHhc--CCCeEEEEecccc
Confidence 455556889999999999999 6899999999976432 2333333322 223332222 2
Q ss_pred EecChHHHHHHHHhcc-C--CCEEEEccCC---C-chhccccccCCCCCccccchhhhc
Q 003645 714 LVRNTAETIAVIREVS-R--CNLLLVGRMP---D-GELALALSTRSDCLELGPVGSLLT 765 (805)
Q Consensus 714 ~v~~~~e~~~~i~~~~-~--~DLiiVGr~~---~-~~~~~gl~~w~e~~eLG~igd~la 765 (805)
.-.|+..|..++.+.. + +||++.|+.. . +.+-..+.+|-..|.++.+=++-.
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEI 150 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEE
Confidence 2334555666665432 2 9999999987 2 222233445545566666655553
No 133
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=69.19 E-value=24 Score=42.51 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=75.9
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEE
Q 003645 632 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 711 (805)
Q Consensus 632 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~ 711 (805)
...||+|-..|+|....-+..|.|+|+.-++..|++++..++... ..+.+++.-++.+ ++.++... +.+
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~------~~~~~~~~l~~~~-~Lae~lGa----e~~ 315 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR------LSEKEARRLHENL-RLAEELGA----EIV 315 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc------ccHHHHHHHHHHH-HHHHHhCC----eEE
Confidence 347999999999999999999999999999999999998665432 1111111111111 22223221 122
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhccCCCCceeEEEEE
Q 003645 712 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 778 (805)
Q Consensus 712 e~~v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~SvLvvq 778 (805)
...-.|-++.+....+..+..-+|+|+++.+ .|.+.-. |.+.|-|+...-. -.|-+|-
T Consensus 316 ~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~-------rw~~~~~-~~l~~~L~~~~~~-idv~ii~ 373 (890)
T COG2205 316 TLYGGDVAKAIARYAREHNATKIVIGRSRRS-------RWRRLFK-GSLADRLAREAPG-IDVHIVA 373 (890)
T ss_pred EEeCCcHHHHHHHHHHHcCCeeEEeCCCcch-------HHHHHhc-ccHHHHHHhcCCC-ceEEEee
Confidence 2223444444444444445889999998722 3533222 7888888864333 3444443
No 134
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=68.57 E-value=2.2e+02 Score=32.45 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHH
Q 003645 181 FPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILL 217 (805)
Q Consensus 181 ~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll 217 (805)
.|++....+.+|+-+.+.--.+++++.+.|..+.++-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 4778888888887665556788899999999888653
No 135
>COG2985 Predicted permease [General function prediction only]
Probab=67.74 E-value=25 Score=39.84 Aligned_cols=107 Identities=23% Similarity=0.300 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchh---HHhcchhHHHHHHHHHHH
Q 003645 67 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAGISL 143 (805)
Q Consensus 67 ~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~ia~~~~~i 143 (805)
..-|.+++|++||- +|.+.+.. +..|+ .....+.++|+.+||=-+|++---+. +-..+-..+..+..-.++
T Consensus 397 ~aGGpLivaLiLG~--ig~iGpl~-w~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILGF--IGAIGPLT-WFMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHHH--hcccCceE-EEcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 34577889999883 55555422 23343 34678899999988877777654432 223444455556666677
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHHHHH-HhhccHHHHHHH
Q 003645 144 PFALGIGSSFLLRETISKGVDSTSFLVFMGVA-LSITAFPVLARI 187 (805)
Q Consensus 144 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~i 187 (805)
|.+.++.++.++.+. ......|++ -+.|++|...-.
T Consensus 471 p~i~~~llg~~v~km--------n~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 471 PVIIVFLLGRYVLKM--------NWLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHhc--------cHHHHhhHHhcCCCChHHHHHH
Confidence 777777777666542 224445544 488998866543
No 136
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=67.30 E-value=13 Score=36.06 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=63.1
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEe-c--ChHH
Q 003645 644 RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV-R--NTAE 720 (805)
Q Consensus 644 ~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v-~--~~~e 720 (805)
+.|+|+|+.|+++++..+.+++++-+-+..+ .++.+.+...++ .-+++...+--- . +.+.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~ 77 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------AAEALRKALAKY-GADKVYHIDDPALAEYDPEA 77 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------------HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------------hHHHHhhhhhhc-CCcEEEEecCccccccCHHH
Confidence 7899999999999999999999987752111 233333433322 223343332111 1 2334
Q ss_pred HHHHHHhc---cCCCEEEEccCC-C---chhccccccCCCCCccccchhhhccCCCCc-eeEEEEEeeccccccccc
Q 003645 721 TIAVIREV---SRCNLLLVGRMP-D---GELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDRVFMNLA 789 (805)
Q Consensus 721 ~~~~i~~~---~~~DLiiVGr~~-~---~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~~~~~~~~~ 789 (805)
...++.+. .++|++++|.+. . .+..+...+| +.+.|... +.. ..-+.+.++...+.....
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~------~~v~~v~~---l~~~~~~~~~~r~~~gG~~~~~ 145 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGA------PLVTDVTD---LEVEDGGLVVTRPVYGGKVVAT 145 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-------EEEEEEEE---EEEETTEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCC------CccceEEE---EEECCCeEEEEEECCCCEEEEE
Confidence 44555433 239999999986 1 2333333333 55555542 111 223555665555544433
No 137
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=66.51 E-value=9.2 Score=41.07 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHh
Q 003645 323 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNI 402 (805)
Q Consensus 323 ~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~ 402 (805)
.++++=|+.|.-+|..+|+..+.. ..+. .++-..+-++ +..+++.+...|++.+|+-.+|.+=+.-|-.++.+.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgplla-nP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLA-NPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHh-CHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 357888888999999999987653 2222 2222333333 34466667778999999999999777777666666543
Q ss_pred hc-c-CCccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhh
Q 003645 403 GK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 441 (805)
Q Consensus 403 ~~-~-~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~ 441 (805)
.. + .+.+.-..|+-|- +.-.+-||+.+.+-.+++|
T Consensus 143 LAp~LlgpIaVaAYsYMa----LvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 143 LAPHLLGPIAVAAYSYMA----LVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhhhhHHHHHhcCHHHH
Confidence 22 1 1222333344332 2345678888877654444
No 138
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.10 E-value=20 Score=34.53 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhccCC---CCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccch--hh-HHHHHHHHHHHHHHHHHH
Q 003645 294 AMFGAFVVGVLVPKE---GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL--QS-WGLLALVILTACLGKIVG 367 (805)
Q Consensus 294 ~~lgaf~aGl~l~~~---~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~--~~-~~~~~~i~~~~~~~K~~~ 367 (805)
..-|+++.|+++.+- +|....+......+..++.+-+|...+|++.-...+..- .. +....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345778888877652 333344545566666788888999999999765433221 12 222222233444444666
Q ss_pred HHHHHHhcCCChHH
Q 003645 368 TFVVSLSFKVPLRE 381 (805)
Q Consensus 368 ~~l~~~~~~~~~~~ 381 (805)
.++..+++|+++..
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 67777889998754
No 139
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=64.15 E-value=17 Score=36.00 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=42.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 702 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 702 (805)
+|+|.+.||+|.--.|.+..++.++.+.+++++++...-. .+...+.+++.++..++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----------~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----------EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----------CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----------cccchhHHHHHHHHHhc
Confidence 5899999999999999999999999899999999975322 12234567788877765
No 140
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=62.96 E-value=22 Score=38.29 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=31.3
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 003645 634 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 672 (805)
Q Consensus 634 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 672 (805)
.++++.|.||+|+--.|.+|.+.-...+..+.++++.+.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 478999999999999999998875544567788887643
No 141
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=62.63 E-value=34 Score=33.59 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=31.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 671 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 671 (805)
+|++.+.||.|+--++.++.+...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999998876567888888854
No 142
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=61.94 E-value=17 Score=39.15 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=33.3
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCe-EEEEEEEe
Q 003645 632 VSYTITVLFFGGRDDREALACGARMAEHPGI-SFIVIRFL 670 (805)
Q Consensus 632 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v-~ltvvr~~ 670 (805)
...+|+|-|.||+|.-..|+++.+.|+..+- ++.|+++-
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 3569999999999999999999999977665 78888874
No 143
>COG0679 Predicted permeases [General function prediction only]
Probab=60.11 E-value=1.6e+02 Score=31.82 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 293 HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 372 (805)
Q Consensus 293 ~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~ 372 (805)
-+++.-...|..+.+.....++-.+-+..++..+.+|..++..=.+.+.+... .+...+..++..++.=+...++..
T Consensus 10 lpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 86 (311)
T COG0679 10 LPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGR 86 (311)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777766777777778999999999999876655555554431 233344444455555556666666
Q ss_pred HhcCCChHHHH--HHHHHHhhhHHHHHHHHH
Q 003645 373 LSFKVPLREAL--ALGILMNTKGLVELIVLN 401 (805)
Q Consensus 373 ~~~~~~~~~~~--~lgl~l~~kG~v~l~l~~ 401 (805)
+..+.+.+++. .++...+.-|-+.+-++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 87 FLFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HHhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 67777766553 334444555555544433
No 144
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=59.27 E-value=22 Score=38.11 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 672 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 672 (805)
+.++.|.||+|+--.|.++.+.-...+..+.++++-..
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 45788999999999999999886544567888888643
No 145
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=58.69 E-value=60 Score=31.71 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEee
Q 003645 635 TITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLL 671 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~ 671 (805)
||++.+.||.|.--++.++.+..++. +.+++.+++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998887654 77888888864
No 146
>COG0679 Predicted permeases [General function prediction only]
Probab=57.71 E-value=2.8e+02 Score=30.03 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHhhccC-CCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 003645 291 GIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 369 (805)
Q Consensus 291 g~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~ 369 (805)
=.+|.+=|+++|+++.. +-+....+.+-++.+. +.-.|+-.+..|+.++...... ............-.+...+..+
T Consensus 166 ~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 166 LTNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred HhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 34667777777777653 2334445666666665 8889999999999999854443 2333333333335667788888
Q ss_pred HHHHhcCCChHHHHHHHHH-HhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 370 VVSLSFKVPLREALALGIL-MNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 370 l~~~~~~~~~~~~~~lgl~-l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
+..+.++++..+...+=+. ..|.+....+++.. .+. +++..+..+....+.+.++.|.+.+.
T Consensus 244 ~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~-~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 244 LVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGG-DPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999876655322221 24444444444333 333 44444444455555666666665544
No 147
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=56.40 E-value=22 Score=38.47 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=31.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 003645 634 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 672 (805)
Q Consensus 634 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 672 (805)
.++++.|.||+|+--.|.++.+.....+..+.++++-+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 367899999999999999999987544567788887543
No 148
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=56.01 E-value=12 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.2
Q ss_pred EEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEE
Q 003645 636 ITVLFFGGRDDREALACGARMAEHPGISFIVIRF 669 (805)
Q Consensus 636 i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 669 (805)
|++++.||+|+..++.++.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 33567777775
No 149
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=54.38 E-value=3.1e+02 Score=29.63 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhhccC-CCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 003645 292 IHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFV 370 (805)
Q Consensus 292 ~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l 370 (805)
.++.+=|.++|+++.- +-+....+.+-++.+. +...|+-.+.+|+.++...... .+.......+...+.-.+.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777652 2233456666677765 8889999999999988766542 2333444445555556666677
Q ss_pred HHHhcCCChHHHH--HHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhhHHHHHHH
Q 003645 371 VSLSFKVPLREAL--ALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 371 ~~~~~~~~~~~~~--~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~~plv~~l 435 (805)
....++.+..... .+-. ..|-+....+++ .+.| .+++..+..+....+.++++-|++.++
T Consensus 258 ~~~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A---~~y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 258 ISKLIGLRGLELSVAILQA-ALPGGAVAAVLA---TEYE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHhCCChHHHHHHHHHH-cCChhhHHHHHH---HHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777654332 2222 223333333333 3333 255666666666667777777877654
No 150
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=54.33 E-value=1.6e+02 Score=31.99 Aligned_cols=91 Identities=23% Similarity=0.286 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 294 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVS 372 (805)
Q Consensus 294 ~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~-~~~~~~~~i~~~~~~~K~~~~~l~~ 372 (805)
.++.+.++|...|.-+..+..+. .|... .+...+.|...|++++...+... ..|..........++.=.+.++...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888886433332222 11222 33356677788999998877543 3455554444555555555555555
Q ss_pred HhcCCChHHHHHHHH
Q 003645 373 LSFKVPLREALALGI 387 (805)
Q Consensus 373 ~~~~~~~~~~~~lgl 387 (805)
+..+-...+.+..|+
T Consensus 83 ~l~~~~~~~~l~~Gl 97 (313)
T PF13593_consen 83 RLFPAFLPPELALGL 97 (313)
T ss_pred HHhhccCCHHHHHHH
Confidence 554321223344444
No 151
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=53.67 E-value=88 Score=34.70 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003645 44 LQICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 121 (805)
Q Consensus 44 ~~i~lil~~~~~~~~ll~~--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 121 (805)
..+++.+.++..+..+++. +.+|..++.+.+|+++... -+..+. +.-..+..+.++++++-+++=.+=+.+
T Consensus 225 ~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni-----~~~~~~--~~v~~~~v~~ig~vsL~lflamALmSl 297 (404)
T COG0786 225 AIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNI-----LDLLKK--YRVFRRAVDVIGNVSLSLFLAMALMSL 297 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhH-----HHHhcc--ccccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444555555555653 5689999999999999852 111111 112346788999999999887776777
Q ss_pred CchhHHhcchhHHHHHHHHHHHH
Q 003645 122 DPKSLRQTGKKALGIAIAGISLP 144 (805)
Q Consensus 122 d~~~l~~~~~~~~~ia~~~~~ip 144 (805)
.+-++-..+-..+.+-..+.++.
T Consensus 298 kLweL~~l~lpl~viL~vQ~i~m 320 (404)
T COG0786 298 KLWELADLALPLLVILAVQTIVM 320 (404)
T ss_pred HHHHHHhccccHHHHHHHHHHHH
Confidence 77777766666666655555544
No 152
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=52.75 E-value=1.6e+02 Score=27.95 Aligned_cols=45 Identities=9% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHH--HhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 328 LPLYFV--SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL 373 (805)
Q Consensus 328 ~PlfF~--~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 373 (805)
+|+||+ .+|.-..++.+.. +.|.+++++++..+++=.+.++...+
T Consensus 69 m~LfFVPagVGim~~~~ll~~-~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQ-YPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776 4444444555543 34544444444443333333343333
No 153
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=51.73 E-value=3.7e+02 Score=29.70 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhH
Q 003645 272 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 350 (805)
Q Consensus 272 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~ 350 (805)
-+.+-+....+++.+. =.-.+.+|.+.+|-.+.+ ... +++.+..+.-..++..-+.-..+|...+-..+.+..+.
T Consensus 232 KilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 232 KFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKE-AQI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred hhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 3445555555554432 234689999999999985 334 55555554444344444445678888776666554443
No 154
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=49.24 E-value=90 Score=35.64 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=43.7
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003645 633 SYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 702 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 702 (805)
..+|++.+.||+|.--.|.+..++. ..++.+++++|+...-.. +.+.++++.+++..++
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----------NADSWVKHCEQVCQQW 74 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----------chHHHHHHHHHHHHHc
Confidence 3689999999999998888888776 456889999999753221 1233457778887765
No 155
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=47.59 E-value=3e+02 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 003645 353 LALVILTACLGKIVGTFVVSLSFKV 377 (805)
Q Consensus 353 ~~~i~~~~~~~K~~~~~l~~~~~~~ 377 (805)
..+.++..+++-++|+++..+.+|-
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667778888888777653
No 156
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=46.95 E-value=1.7e+02 Score=32.26 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=51.0
Q ss_pred HHHHccc-CCChhHHHHHHHHhccccccCCchhhhcccCCCCcH---HHHH-HHHHHHHHHHHHHHhhc-cCchhHHhcc
Q 003645 57 AFILRPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ---TVLD-TLANLGLIFFMFLVGLE-LDPKSLRQTG 130 (805)
Q Consensus 57 ~~ll~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~---~~l~-~l~~lgl~~~lF~~Gle-~d~~~l~~~~ 130 (805)
+.+++.+ ++|..+-.++.|+++-- +|.++ ++.. ..+. ++..--...+|+-.|+. +|++++.+..
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp--------~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVP--------KEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 3444444 68999999999999874 34333 2221 1222 33333333455557876 8999998877
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 131 -KKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 131 -~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
.+.+.+.+.+++--.+.++.++.+++
T Consensus 265 t~~~vviiv~~Vlg~ii~s~lvGKllG 291 (347)
T TIGR00783 265 SWQFVVICLSVVVAMILGGAFLGKLMG 291 (347)
T ss_pred chhHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 33344444444433444555555554
No 157
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=45.44 E-value=64 Score=30.34 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcC-CCceEEEecCCC
Q 003645 559 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGILIDRGL 621 (805)
Q Consensus 559 ~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~A-pcsVgIlvdrg~ 621 (805)
....+.+.+++++.+++.||+|...+. ||.........+.+.+++-++. +++| .++|--+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 578899999999999999999987653 5554444455778888888886 8998 6787744
No 158
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=45.39 E-value=2.7e+02 Score=34.35 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhcc
Q 003645 107 NLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA 180 (805)
Q Consensus 107 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts 180 (805)
++-+-++....|++.|...+.+ +.............-++.+.+.+.+... +...++.+|.+++.-.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~-------p~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKL-------PLRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHHhhh
Confidence 4556667788899999999988 3222222222333334444444443321 1245777777776533
No 159
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=44.07 E-value=3.4e+02 Score=27.01 Aligned_cols=128 Identities=13% Similarity=0.270 Sum_probs=62.3
Q ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 003645 244 VICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITD--AIGIHAMFGAFVVGVLVPKEGPFANALVEKVED 321 (805)
Q Consensus 244 ~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae--~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~ 321 (805)
..+..++.+|..-.+..|.|+.. ......+...++.....+ ..-...+++++++=++... ...++.-...+.+
T Consensus 37 ~~i~ali~g~vyml~~~KV~K~G----~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay 111 (186)
T PF09605_consen 37 PAIAALICGIVYMLMVAKVPKRG----AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAY 111 (186)
T ss_pred HHHHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 34455566777777777875432 222222222222212221 2334566777777777753 3343333332221
Q ss_pred h-----HHHHHHHHHHHHhccc---------ccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003645 322 L-----VSGIFLPLYFVSSGLK---------TNI-ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK 376 (805)
Q Consensus 322 ~-----~~~~f~PlfF~~~Gl~---------~dl-~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~ 376 (805)
. ..+-+.|++|..=... -+. +.+.+..+.+...+.++..+++-++|+++..+..|
T Consensus 112 ~vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 112 AVFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1256677776543332 111 11111112233455666777778888888877664
No 160
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=42.73 E-value=3.8e+02 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhchhHHH-HHHHHHhh
Q 003645 277 LAAVLAAGFITDAIGIHAMF-GAFVVGVL 304 (805)
Q Consensus 277 l~~~l~~~~~ae~~g~~~~l-gaf~aGl~ 304 (805)
..+.++..+..+++|-.++. .+++.|++
T Consensus 136 ~~i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 136 AVILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 34444556677788877665 67777764
No 161
>COG2035 Predicted membrane protein [Function unknown]
Probab=42.48 E-value=4.4e+02 Score=27.91 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhcc--ccccCCc
Q 003645 39 LPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLG--PSALGRS 86 (805)
Q Consensus 39 ~~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilG--P~~lg~~ 86 (805)
.|+..-.+.-+..+++++.++++. .|.++-...+|+++| |+.++.+
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i 106 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEI 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666677788888888876 667777778899998 4444443
No 162
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.08 E-value=5.2e+02 Score=28.58 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhccCCCCc-----hHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 003645 293 HAMFGAFVVGVLVPKEGPF-----ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVG 367 (805)
Q Consensus 293 ~~~lgaf~aGl~l~~~~~~-----~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~ 367 (805)
++.+=+.++|+++.--++. ...+.+-++.+. ....|+-.+.+|..+..........+......++..++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 4555555666655422211 245555666665 7889999999999876543321122333333455666666667
Q ss_pred HHHHHHhcCCChH
Q 003645 368 TFVVSLSFKVPLR 380 (805)
Q Consensus 368 ~~l~~~~~~~~~~ 380 (805)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776544
No 163
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=41.82 E-value=1.3e+02 Score=32.16 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=70.4
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
+++++..|-.+-... ..+.+.|++.|++.++..||.-..+.-...+ ...+.....+..+++++||++=.|.|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 13 ANQENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 444556666666665 5889999999999999999988754422211 123566777889999999999999975
Q ss_pred CCCccc-ccCCcceEEEEeccCCcChHHHHHHHHHH---hhCCCeE
Q 003645 622 GGTTQV-SASNVSYTITVLFFGGRDDREALACGARM---AEHPGIS 663 (805)
Q Consensus 622 ~~~~~~-~~~~~~~~i~v~f~GG~ddreAL~~a~rm---a~~~~v~ 663 (805)
+ .... ...+...+.+++=.-..+++|-++.++++ ++.-++.
T Consensus 86 ~-~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 86 T-FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred C-HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3 0000 00001123333222234677888777655 4555554
No 164
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=41.71 E-value=7.1e+02 Score=30.08 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=57.0
Q ss_pred eEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 541 (805)
Q Consensus 462 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 541 (805)
+||.-+.+|+..-+++++...+.+ +. +|++--|.+.+..+..+ ++. ....+.--.|..+
T Consensus 562 QILLlV~nPrss~~Lirf~N~LKK----gg--LYilGHV~~gd~~~~~~-------d~l--------~~q~~~W~s~vd~ 620 (945)
T KOG1288|consen 562 QILLLVSNPRSSCNLIRFCNDLKK----GG--LYILGHVIVGDDFSASM-------DEL--------QQQQRAWLSFVDD 620 (945)
T ss_pred eEEEEecCCcccchHHHHHHhhcc----cc--eEEEEEEEecccccccc-------chh--------hHHHHHHHHHHHH
Confidence 799999999999999999888774 33 58876666665433210 000 0011111122222
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCccc
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKH 584 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e-----~~a~lIilp~h~~ 584 (805)
+ +++.=.....| .++-.+|-++-+- .+.+.+|+|||..
T Consensus 621 ~---~iKAFvelt~s--psir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 621 A---GIKAFVELTIS--PSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred h---hhhhheeeccC--hhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 2 22222223344 3777777777665 5789999999854
No 165
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=40.25 E-value=4e+02 Score=29.82 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHH-HHHH--hhhHHHH
Q 003645 321 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVP-LREALAL-GILM--NTKGLVE 396 (805)
Q Consensus 321 ~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~-~~~~~~l-gl~l--~~kG~v~ 396 (805)
+.++..++|+-....=++.|+..+.. ... .....++.+.++-.+++.+..+.++.. -.|.+.. |.+. -.-|.+-
T Consensus 54 ~~v~~~~vPlai~LlLl~~Dlr~i~~-~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N 131 (378)
T PF05684_consen 54 DFVWTYLVPLAIPLLLLSADLRRILR-LGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVN 131 (378)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhH
Confidence 34445556665555557889887764 233 344455666677777777777766543 2333322 2211 2345555
Q ss_pred HHHHHhhccCCccChhHHHHHHHH
Q 003645 397 LIVLNIGKDRKVLNDQVFAIMILM 420 (805)
Q Consensus 397 l~l~~~~~~~~~i~~~~~~~~vl~ 420 (805)
++....+++. +++.++..+.+
T Consensus 132 ~~Av~~al~~---~~~~~~a~~aa 152 (378)
T PF05684_consen 132 FVAVAEALGV---SDSLFAAALAA 152 (378)
T ss_pred HHHHHHHHCC---CHHHHHHHHHH
Confidence 5555544432 45666665433
No 166
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=39.79 E-value=55 Score=29.10 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEE
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 714 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~ 714 (805)
||+++=.||... ++|+++++.+.+. -+.+.+.|... ...-......
T Consensus 2 kVLviGsGgREH----Aia~~l~~s~~v~--~v~~aPGN~G~----------------------------~~~~~~~~~~ 47 (100)
T PF02844_consen 2 KVLVIGSGGREH----AIAWKLSQSPSVE--EVYVAPGNPGT----------------------------AELGKNVPID 47 (100)
T ss_dssp EEEEEESSHHHH----HHHHHHTTCTTEE--EEEEEE--TTG----------------------------GGTSEEE-S-
T ss_pred EEEEECCCHHHH----HHHHHHhcCCCCC--EEEEeCCCHHH----------------------------HhhceecCCC
Q ss_pred ecChHHHHHHHHhccCCCEEEEccCCCchhcccccc
Q 003645 715 VRNTAETIAVIREVSRCNLLLVGRMPDGELALALST 750 (805)
Q Consensus 715 v~~~~e~~~~i~~~~~~DLiiVGr~~~~~~~~gl~~ 750 (805)
.+|..++....++-. .||+|||- +.|+..|+.|
T Consensus 48 ~~d~~~l~~~a~~~~-idlvvvGP--E~pL~~Gl~D 80 (100)
T PF02844_consen 48 ITDPEELADFAKENK-IDLVVVGP--EAPLVAGLAD 80 (100)
T ss_dssp TT-HHHHHHHHHHTT-ESEEEESS--HHHHHTTHHH
T ss_pred CCCHHHHHHHHHHcC-CCEEEECC--hHHHHHHHHH
No 167
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=39.58 E-value=5.4e+02 Score=28.12 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHH------HHHHHHHh
Q 003645 45 QICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGL------IFFMFLVG 118 (805)
Q Consensus 45 ~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl------~~~lF~~G 118 (805)
++..+++...+.+.-.+|---|.+.--|-.|+++.+.-+.... +..........+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~---~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLM---DQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhc---ccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 3444445555555566666678888889899998853321110 00000001122333333332 23455678
Q ss_pred hccCchhHHhcchhHH
Q 003645 119 LELDPKSLRQTGKKAL 134 (805)
Q Consensus 119 le~d~~~l~~~~~~~~ 134 (805)
--+|+.-+..+.|..+
T Consensus 81 AmtDFgpllanP~~~l 96 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLL 96 (360)
T ss_pred HHHhhHHHHhCHHHHH
Confidence 8899999999988744
No 168
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=39.25 E-value=1e+02 Score=33.20 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred HHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHH
Q 003645 69 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALG 148 (805)
Q Consensus 69 v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~ 148 (805)
+-.++.|+++|+. .+++.+.+-| -..+-..|+-|..|-.+|+..+.+.+-.-+.+++..++++....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3356789999952 1222222222 22233567889999999999999999888888887766655544
Q ss_pred HHHHHH
Q 003645 149 IGSSFL 154 (805)
Q Consensus 149 ~~~~~~ 154 (805)
+.+-.+
T Consensus 242 ~~~dr~ 247 (314)
T PF03812_consen 242 YLADRL 247 (314)
T ss_pred HHHHHH
Confidence 443333
No 169
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=39.04 E-value=5.5e+02 Score=30.39 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHhhhHHH
Q 003645 325 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS---------FKVPLREALALGILMNTKGLV 395 (805)
Q Consensus 325 ~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lgl~l~~kG~v 395 (805)
.+++|....-.|..+|...+.. .+..+..+.+.+++.-.+.+....++ .+++|.+++.+|.++++..-+
T Consensus 70 ~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 70 LYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 5688888888999999988764 33333333333333322222222221 256999999999999988876
Q ss_pred HHH
Q 003645 396 ELI 398 (805)
Q Consensus 396 ~l~ 398 (805)
...
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 654
No 170
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.75 E-value=4.5e+02 Score=26.90 Aligned_cols=82 Identities=12% Similarity=0.265 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhccCCccChhHHHHHHHHHHHHHHhh
Q 003645 349 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 428 (805)
Q Consensus 349 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~~~~i~~~~~~~~vl~~lv~t~i~ 428 (805)
.|..+...+..+.+.-+..+++.++.++.+.. ... .+.+|....-+...+..+.|-...-.-..++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 45445555566666777788888899988654 333 35689988777777777777665433333334444444444
Q ss_pred HHHHHH
Q 003645 429 TPLVMA 434 (805)
Q Consensus 429 ~plv~~ 434 (805)
++++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 455554
No 171
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=38.65 E-value=6.1e+02 Score=28.44 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=15.7
Q ss_pred HHHHHHcccCCChhHHHHHHHHhc
Q 003645 55 GLAFILRPLRQPRVIAEITGGILL 78 (805)
Q Consensus 55 ~~~~ll~~l~~P~iv~~ilaGiil 78 (805)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666777788777766666554
No 172
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=37.76 E-value=67 Score=35.15 Aligned_cols=131 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhHHHHHHH
Q 003645 322 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIV 399 (805)
Q Consensus 322 ~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~kG~v~l~l 399 (805)
+.++++=|+.|.-+|..+|+..+.......+.....=.+++.-+++......+- +++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccC--CccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCC
Q 003645 400 LNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNS 457 (805)
Q Consensus 400 ~~~~~~~--~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~ 457 (805)
.+..-.. |.+.-..|+-| -+.-.+-||+.+.+-.+++|..+ -++.|+.-+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~-M~~lr~VSk~eK 265 (433)
T PRK15475 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIR-MVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCcc-CCCCCCCCccch
No 173
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=37.53 E-value=57 Score=31.11 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=27.4
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 671 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 671 (805)
+|++.|.||+|+--.|.++.+...+. -++.++++..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 57899999999999999988866542 3566776643
No 174
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=37.18 E-value=69 Score=35.06 Aligned_cols=131 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhHHHHHHH
Q 003645 322 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIV 399 (805)
Q Consensus 322 ~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~kG~v~l~l 399 (805)
+.++++=|+.|.-+|..+|+..+.......+.....=.+++.-+++......+- +++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccC--CccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCC
Q 003645 400 LNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNS 457 (805)
Q Consensus 400 ~~~~~~~--~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~ 457 (805)
.+..-.. |.+.-..|+-| -+.-.+-||+.+.+-.+++|..+ -++.|+.-+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~-M~~lr~VSk~eK 265 (433)
T PRK15476 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIR-MVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCcc-CCCCCCCCccch
No 175
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=37.13 E-value=70 Score=35.05 Aligned_cols=131 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhhHHHHHHH
Q 003645 322 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIV 399 (805)
Q Consensus 322 ~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~kG~v~l~l 399 (805)
+.++++=|+.|.-+|..+|+..+.......+.....=.+++.-+++......+- +++.+|+-.+|.+=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred HHhhccC--CccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCC
Q 003645 400 LNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNS 457 (805)
Q Consensus 400 ~~~~~~~--~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~ 457 (805)
.+..-.. |.+.-..|+-| -+.-.+-||+.+.+-.+++|..+ -++.|+.-+...
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~-M~~lr~VSk~eK 265 (433)
T PRK15477 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIR-MVQLRTVSKREK 265 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCcc-CCCCCCCCccch
No 176
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=36.65 E-value=5e+02 Score=26.87 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=25.3
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
-+.+.+||+++..+.--+.+.++.++.+..++.+++
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457788888887776666677777666666666654
No 177
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.29 E-value=5.6e+02 Score=27.35 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 003645 325 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 364 (805)
Q Consensus 325 ~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K 364 (805)
-+-+|..|..+--.-.+..- +..+|.++.++.+.+...|
T Consensus 230 ylTlPvLf~MiSnHyp~~y~-~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTYG-HPYNWLILALIMLAGALIR 268 (300)
T ss_pred eeHHHHHHHHHhccCccccc-cchhHHHHHHHHHHHHHHH
Confidence 46689888886544443332 2356765555555555444
No 178
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=36.11 E-value=1.1e+02 Score=31.56 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=47.7
Q ss_pred EEEEeEEecCCC-ChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 003645 548 SVRPMTAISSMS-DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 617 (805)
Q Consensus 548 ~v~~~~~vs~~~-~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlv 617 (805)
....++.++|-+ ...++|.+.+.+-..|.|++|- ++|. .......+.+++-++..-||-++.
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG-----S~gv---t~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG-----SDGV---TEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECC-----cccc---cHHHHHHHHHHHHhhcCCCEEEec
Confidence 346788899988 8999999999999999999993 2222 223467788888878888875544
No 179
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=35.72 E-value=3.6e+02 Score=25.61 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChh---HHHHHHHHhccccccCCchhhhcccCCCCcHHH-HHHHHHHHHHHHHH
Q 003645 40 PLAILQICLVILLTRGLAFILRPLRQPRV---IAEITGGILLGPSALGRSERFLQAVFPPKSQTV-LDTLANLGLIFFMF 115 (805)
Q Consensus 40 ~~~l~~i~lil~~~~~~~~ll~~l~~P~i---v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~-l~~l~~lgl~~~lF 115 (805)
..++.|+++++.+..+...+.+-+++|-. +|.++.=+.|. ++.+. +.+-.+. --.+.++++.|+==
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-------~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-------LEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 35678888888888777777777776532 33332211111 11111 0000001 11234444444444
Q ss_pred HHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003645 116 LVGLELDPKSLRQTGKKALGIAIAGISLPFAL 147 (805)
Q Consensus 116 ~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~ 147 (805)
-+|+=...+.+++++-..+..-+.+.++.++.
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~v 108 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLAC 108 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555555555443
No 180
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=35.63 E-value=4.3e+02 Score=25.85 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhhccCCC---CchHHHHHHHHHhHHHHHHHHHHHHhccccccccccch--hhHHHHHHHHHHHHHHHH
Q 003645 291 GIHAMFGAFVVGVLVPKEG---PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL--QSWGLLALVILTACLGKI 365 (805)
Q Consensus 291 g~~~~lgaf~aGl~l~~~~---~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~--~~~~~~~~i~~~~~~~K~ 365 (805)
.+...-|+++.|+++.+-. |.. +......+..++.+-+|...+|++.-...+..- ..+.....- ++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~-~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG-VIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3344457777777776421 111 444555566778888999999998765433221 233333333 33333444
Q ss_pred HHHHHHHH-hcCCChHH
Q 003645 366 VGTFVVSL-SFKVPLRE 381 (805)
Q Consensus 366 ~~~~l~~~-~~~~~~~~ 381 (805)
+.++..++ ++|+++..
T Consensus 99 ~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 55555565 88998654
No 181
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=35.21 E-value=2.1e+02 Score=30.82 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred HHHHHHHHhccccccCCchh-hhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHH
Q 003645 69 IAEITGGILLGPSALGRSER-FLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 147 (805)
Q Consensus 69 v~~ilaGiilGP~~lg~~~~-~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~ 147 (805)
+-.++.|+++|+ .++ +.+.+-| -..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++...
T Consensus 175 ilPlliG~ilGN-----LD~~~r~fl~~---------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 175 VLPFLVGFALGN-----LDPELRDFFSK---------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHhc-----CCHHHHHHhcc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 335678999996 222 2222222 1223355788999999999999999888888887766666555
Q ss_pred HHHHHHHH
Q 003645 148 GIGSSFLL 155 (805)
Q Consensus 148 ~~~~~~~l 155 (805)
.+....++
T Consensus 241 ~~~~dr~~ 248 (314)
T TIGR00793 241 LILADKFI 248 (314)
T ss_pred HHHHHHHh
Confidence 55444433
No 182
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=35.16 E-value=6.1e+02 Score=27.38 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhc
Q 003645 325 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGK 404 (805)
Q Consensus 325 ~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~ 404 (805)
.+++=.|++.++.-.|+..+.....|. +..+...+...+..+..++.++.+..+-..-++ -|..|-.+.-....++
T Consensus 276 tv~lY~~v~vias~Ad~~~i~taP~~i---~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~ 351 (384)
T COG5505 276 TVLLYLFVVVIASPADLRLIVTAPLII---LFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAK 351 (384)
T ss_pred HHHHHHHHHHhccchhHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhc
Confidence 456667899999999998887543343 233334445666777888899888777554444 6778877777777777
Q ss_pred cCCccC
Q 003645 405 DRKVLN 410 (805)
Q Consensus 405 ~~~~i~ 410 (805)
+...+.
T Consensus 352 nr~lv~ 357 (384)
T COG5505 352 NRELVA 357 (384)
T ss_pred Cchhcc
Confidence 654444
No 183
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=32.44 E-value=85 Score=29.61 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 561 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 561 ~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
..+.|.+++++.+++.||+|...+ .+|.........+.+.+++-++-+++| +++|--+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999998764 355543334457788888877778898 6787744
No 184
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=31.84 E-value=1.2e+02 Score=33.89 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 003645 630 SNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 671 (805)
Q Consensus 630 ~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 671 (805)
-.+..++++.+.||.|.--|+.++.+. +.++..++|..
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~ 206 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFN 206 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeC
Confidence 345679999999999999999888552 67888999974
No 185
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=31.54 E-value=82 Score=30.29 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 670 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 670 (805)
++++.|.||+|+.-.|.++.+...+. .++++.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999988773 566554
No 186
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=31.51 E-value=1.6e+02 Score=31.26 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=42.8
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 003645 634 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 702 (805)
Q Consensus 634 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 702 (805)
++|+|.+.||+|.--+|.+..++.++ .++.++++...-.. ..+.+.+...++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----------~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----------YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----------ccchHHHHHHHHHHHh
Confidence 69999999999999999999999988 89999998753221 1234556666666554
No 187
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=30.18 E-value=7.4e+02 Score=26.91 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCccCCch
Q 003645 182 PVLARILAELKLLTADV 198 (805)
Q Consensus 182 ~vv~~iL~el~l~~s~~ 198 (805)
|++.++.++.|+-++++
T Consensus 118 Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 118 PIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHcCCChHHH
Confidence 77888888888655444
No 188
>PRK01821 hypothetical protein; Provisional
Probab=29.66 E-value=4.8e+02 Score=24.51 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHH--Hhccccccccccc
Q 003645 272 YVCATLAAVLAAGFITDAIGIH---AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV--SSGLKTNIATIQG 346 (805)
Q Consensus 272 ~~~~~l~~~l~~~~~ae~~g~~---~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~--~~Gl~~dl~~l~~ 346 (805)
.+.++++..++.-.+++.+++. +++|-++.=+.+--+.-..+++.+--+.+... +|+||+ .+|.-...+.+.+
T Consensus 14 ~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~~~a~~LL~~--m~LfFVPa~VGim~~~~ll~~ 91 (133)
T PRK01821 14 AFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVKPGCSLLIRY--MALLFVPIGVGVMQYYDLLRA 91 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003645 347 LQSWGLLALVILTACLGKIVGTFVVSLSFK 376 (805)
Q Consensus 347 ~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~ 376 (805)
+.|..++++++..+++=.+.++...+..+
T Consensus 92 -~~~~il~~ivvST~lvl~vtg~~~~~l~~ 120 (133)
T PRK01821 92 -QFGPIVVSCIVSTLVVLLVVGWSSHYVHG 120 (133)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 189
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=29.28 E-value=5.2e+02 Score=27.51 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=51.3
Q ss_pred HHHHHHHhccccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH-HhhhHHHHHHHHHhhcc
Q 003645 328 LPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGIL-MNTKGLVELIVLNIGKD 405 (805)
Q Consensus 328 ~PlfF~~~Gl~~dl~~l~~~~-~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~-l~~kG~v~l~l~~~~~~ 405 (805)
+.+-+..+|+++++.++.... .+......++.-++.-.+.++..+..++.+......+-+. ..|-|..+.+.......
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~~g 93 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKG 93 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHhCC
Confidence 334466778888877664321 1112333334445556666677777777664433322222 23444444333333221
Q ss_pred CCccChhHHHHHHHHHHHHHHhhHHHHHHHh
Q 003645 406 RKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 436 (805)
Q Consensus 406 ~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~ 436 (805)
|.+.-..++....+.+.++.|+...++
T Consensus 94 ----n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 94 ----DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred ----CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333344445666677666554
No 190
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=28.33 E-value=7.9e+02 Score=26.59 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=35.7
Q ss_pred HHHHHcccCCChhHHHHHHHHhccccccCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHH
Q 003645 56 LAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLV 117 (805)
Q Consensus 56 ~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~ 117 (805)
-..+.-.+|.|+++.-+++|..++-++.=.- ...+.-+-+.+.--++.-+.+|.+..++..
T Consensus 34 ~~~ii~~~RlPR~l~a~l~G~~La~sG~~lQ-~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 34 AQFIIWDLRLPRILAAILVGAALALSGALLQ-TLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp HHHHHCCTCHHHHHHHHHHHHHHHHHHHHHH-HHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 3456678899999999999999985442110 111111112233335566777777766654
No 191
>COG3748 Predicted membrane protein [Function unknown]
Probab=27.95 E-value=5.1e+02 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Q 003645 310 PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 364 (805)
Q Consensus 310 ~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K 364 (805)
.+++.-.+|...- +.+-+|..|+.+-=...+..- ...+|.++.++.+.++..|
T Consensus 213 ~~gk~akqRS~HN-nylTLPVlF~MlSNHyp~~~g-t~fnWii~alv~l~gV~IR 265 (407)
T COG3748 213 KLGKTAKQRSRHN-NYLTLPVLFTMLSNHYPLAFG-TQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred chhhhhhhhhhhc-ceehHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHH
Confidence 3444443443332 357789999887666555433 3367877666666665555
No 192
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=27.83 E-value=2.8e+02 Score=28.49 Aligned_cols=36 Identities=14% Similarity=-0.080 Sum_probs=28.1
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 003645 634 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 672 (805)
Q Consensus 634 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 672 (805)
.++++.|.||+|+--.|.++.+.. +++ +.|+.+.+.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~--i~vv~vDTg 61 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPM--IPVIFIDTL 61 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCC--CCEEEEeCC
Confidence 478999999999999999999976 233 556666543
No 193
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=27.68 E-value=99 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=26.3
Q ss_pred EEeEEecCCCChHHHHHHHHHhcCccEEEecCcccc
Q 003645 550 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 585 (805)
Q Consensus 550 ~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~ 585 (805)
.-..++-|...||..|.++|++.++|++|-|.....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 345566677899999999999999999999996553
No 194
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=27.39 E-value=9.6e+02 Score=27.30 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=23.6
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003645 122 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRE 157 (805)
Q Consensus 122 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~ 157 (805)
|.+.+.|.+.|.+..-+...++..++|..++..+.+
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~p 101 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQP 101 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667777777777666555666666666666665544
No 195
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=27.18 E-value=3.2e+02 Score=30.44 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccCchhHHhcchhHHHHHHH
Q 003645 108 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 139 (805)
Q Consensus 108 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~ 139 (805)
.|+.+.|+..|.+.|++.+++..++...+++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG 148 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG 148 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh
Confidence 67778899999999999999999988866544
No 196
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.20 E-value=2.2e+02 Score=30.51 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=53.2
Q ss_pred hccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCC
Q 003645 543 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLG 622 (805)
Q Consensus 543 ~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~ 622 (805)
++++..|-.+-..+ ..+...+++.|++.++..||.-....-...| -..+..+.....+++++||++=.|.|.+
T Consensus 14 ~~~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 14 EKGGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred HHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 33445555666665 4889999999999999999988754422222 2236677788899999999999999853
No 197
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.99 E-value=2.2e+02 Score=30.40 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=54.0
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
+++++..|-.+-... ..+...|++.|++.++..||.-....-..-| ...+....+...+++++||++=.|.|.
T Consensus 13 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 13 AQAEGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 334555666666665 4889999999999999999976654322212 123677788999999999999999975
Q ss_pred C
Q 003645 622 G 622 (805)
Q Consensus 622 ~ 622 (805)
+
T Consensus 86 ~ 86 (284)
T PRK12737 86 D 86 (284)
T ss_pred C
Confidence 3
No 198
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=25.89 E-value=8.9e+02 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHHHhccccccccccchhh
Q 003645 272 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 349 (805)
Q Consensus 272 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~ 349 (805)
.+.+-+....+++.+. =.-.+.+|.+++|-.+.+ ....+++.+..+.-..++..-+.-..+|...+-..+.+..+
T Consensus 194 Ki~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~t 268 (354)
T TIGR01109 194 KILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQT 268 (354)
T ss_pred hhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHH
Confidence 3444444445444432 234689999999999984 33334444443333333333334457787777666655433
No 199
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=25.80 E-value=3.7e+02 Score=30.47 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCC--CceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEEeecccc
Q 003645 599 RWVNQRVLKHAP--CSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADA 675 (805)
Q Consensus 599 ~~vn~~Vl~~Ap--csVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~ 675 (805)
-+++++|+-.+| |.= |+. +.....+|||.|.||-|.---..++.+.. .|+.+.|-=+-|-.+...
T Consensus 226 ds~k~rvl~i~~rl~~~-i~~-----------~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~ 293 (520)
T KOG0573|consen 226 DSLKDRVLVIPPRLCAN-ILL-----------RCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGS 293 (520)
T ss_pred HHHhhhhhccChhHhhh-ccc-----------cccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcc
Confidence 367778877776 211 111 11234599999999999999888888887 556666655555432111
Q ss_pred cCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEec
Q 003645 676 IGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVR 716 (805)
Q Consensus 676 ~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~ 716 (805)
. + .+-++++..-.-++|++..+. +-...+.|+-|.
T Consensus 294 ~-~----~~~PDRktgr~g~~eL~s~~P-~R~~nlV~vnV~ 328 (520)
T KOG0573|consen 294 K-E----QNVPDRKTGRRGLEELQSLYP-KRSWNLVEVNVT 328 (520)
T ss_pred c-c----cCCccHHHHHHHHHHHHHhCC-cceEEEEeccCC
Confidence 1 0 223667777788899988764 334566776664
No 200
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=25.71 E-value=85 Score=33.89 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=64.0
Q ss_pred HhHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHhhhHH
Q 003645 321 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV------PLREALALGILMNTKGL 394 (805)
Q Consensus 321 ~~~~~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~------~~~~~~~lgl~l~~kG~ 394 (805)
.+.++++=|+.|.-+|..+|+..+.... + ..++-..+-++- ..+++.+...|+ +.+|+-.+|.+=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 3445788889999999999998764321 2 222223333332 334555666677 67998888886666666
Q ss_pred HHHHHHHhhc-c-CCccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhh
Q 003645 395 VELIVLNIGK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 441 (805)
Q Consensus 395 v~l~l~~~~~-~-~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~ 441 (805)
.++.+.+... + .+.+.-..|+-| -+.-.+-||+.+.+-.+++|
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHh
Confidence 5555544221 1 122222333333 12345667888877544333
No 201
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.64 E-value=2e+02 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhh
Q 003645 140 GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSI 178 (805)
Q Consensus 140 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 178 (805)
++++|.++|..++.++...++.+.......+++|++...
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 456778888888888877665433333445555555543
No 202
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=25.43 E-value=2.5e+02 Score=32.85 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhccccccccccchhhHHHHH--HH-------HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHH
Q 003645 325 GIFLPLYFVSSGLKTNIATIQGLQSWGLLA--LV-------ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLV 395 (805)
Q Consensus 325 ~~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~--~i-------~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v 395 (805)
.+++|-.-.-.|.+++-..+.. ..+-+. .+ ++++...|+.+. ....++++++|++.+|-+.+.---|
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~--n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFR--NIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred HHhhchhhhcccceechhhhhh--hhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCch
Confidence 4555555556788888665542 111111 11 112222222222 2234578999999999888766544
Q ss_pred HH
Q 003645 396 EL 397 (805)
Q Consensus 396 ~l 397 (805)
..
T Consensus 179 tv 180 (575)
T KOG1965|consen 179 TV 180 (575)
T ss_pred HH
Confidence 43
No 203
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.27 E-value=2.3e+02 Score=30.23 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=54.3
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
+++++..|-.+-... ..+.+.|++.|++.++..||.-..+.-..-| ...+..+.+...+++..||++=.|.|.
T Consensus 11 A~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 11 AQAGGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555666665 4889999999999999999987654422211 223667888999999999999999985
Q ss_pred C
Q 003645 622 G 622 (805)
Q Consensus 622 ~ 622 (805)
+
T Consensus 84 ~ 84 (282)
T TIGR01858 84 S 84 (282)
T ss_pred C
Confidence 3
No 204
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=24.54 E-value=4.6e+02 Score=29.18 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=112.3
Q ss_pred EEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCch--------hH---HHHhhhh-cCCCCCcCCCCCCCcc
Q 003645 465 ACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSS--------AI---LMVHKAR-RNGLPFWNRGRQSNPN 532 (805)
Q Consensus 465 v~v~~~~~~~~li~l~~~~~~~~~~~~~~v~~lhlvel~~r~~--------~~---~~~~~~~-~~~~~~~~~~~~~~~~ 532 (805)
.++++.++++..-++.++.... ..++.+-+.|.= .++. ++ .+..... .......+ .++.+
T Consensus 74 ~~l~~d~~i~~~~~vt~avH~~--G~~i~iQL~H~G---r~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt---~~eI~ 145 (363)
T COG1902 74 PGLWSDAQIPGLKRLTEAVHAH--GAKIFIQLWHAG---RKARASHPWLPSAVAPSAIPAPGGRRATPRELT---EEEIE 145 (363)
T ss_pred CccCChhHhHHHHHHHHHHHhc--CCeEEEEeccCc---ccccccccCCCcccCCCccccccCCCCCCccCC---HHHHH
Confidence 4566777789999999999864 455544444442 1111 00 0000000 00000011 24456
Q ss_pred hHHHHHHHhhhc------cCeEEEEe--EEecCCCChHHHHHHHHHhcCccEEEecCc--cccccCCccccccchhHHHH
Q 003645 533 HIVVAFEAFQQL------SRVSVRPM--TAISSMSDMHEDICTTAESKRAAIIILPFH--KHQRLDGSLETTRSDFRWVN 602 (805)
Q Consensus 533 ~i~~af~~~~~~------~~v~v~~~--~~vs~~~~~~~dI~~~A~e~~a~lIilp~h--~~~~~~g~~~~~~~~~~~vn 602 (805)
+++++|.+-++. .+|.+|.- .-++ --+-|.+ +....-|.+|+.-.....+.
T Consensus 146 ~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~-------------------qFlsp~tN~RtD~YGGSlENR~Rf~~EVv 206 (363)
T COG1902 146 EVIEDFARAARRAKEAGFDGVEIHGAHGYLLS-------------------QFLSPLTNKRTDEYGGSLENRARFLLEVV 206 (363)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccchHHH-------------------HhcCCccCCCCCccCCcHHHHHHHHHHHH
Confidence 677777666654 46777651 1111 1112222 22234466776666678899
Q ss_pred HHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcccc
Q 003645 603 QRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV 682 (805)
Q Consensus 603 ~~Vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~ 682 (805)
+.|-+.-+.+.-|.+ | .+. . .. ...+|.+-.|++++++.|.+... +-.+++.........
T Consensus 207 ~aVr~~vg~~~~vg~-R-ls~------~----d~--~~~~g~~~~e~~~la~~L~~~G~--~d~i~vs~~~~~~~~---- 266 (363)
T COG1902 207 DAVREAVGADFPVGV-R-LSP------D----DF--FDGGGLTIEEAVELAKALEEAGL--VDYIHVSEGGYERGG---- 266 (363)
T ss_pred HHHHHHhCCCceEEE-E-ECc------c----cc--CCCCCCCHHHHHHHHHHHHhcCC--ccEEEeecccccCCC----
Confidence 999888777632211 3 110 0 00 12338999999999999998864 445565543221100
Q ss_pred CCcCc-cccHHHHHHHHHhhcCCCCCeEEEEEE-ecChHHHHHHHHhccCCCEEEEccCC
Q 003645 683 DMAGN-ASMDEEVLSEFKLKTSRNGSVRYEERL-VRNTAETIAVIREVSRCNLLLVGRMP 740 (805)
Q Consensus 683 ~~~~~-~~~d~~~l~e~~~~~~~~~~v~~~e~~-v~~~~e~~~~i~~~~~~DLiiVGr~~ 740 (805)
..... ...-..+.+.++.... +...-.- ..++++...++++ +..||+-+||-.
T Consensus 267 ~~~~~~~~~~~~~a~~i~~~~~----~pvi~~G~i~~~~~Ae~~l~~-g~aDlVa~gR~~ 321 (363)
T COG1902 267 TITVSGPGYQVEFAARIKKAVR----IPVIAVGGINDPEQAEEILAS-GRADLVAMGRPF 321 (363)
T ss_pred CccccccchhHHHHHHHHHhcC----CCEEEeCCCCCHHHHHHHHHc-CCCCEEEechhh
Confidence 00000 1111233334444321 2222111 3355555556664 249999999987
No 205
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.35 E-value=2.2e+02 Score=29.81 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=30.5
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEee
Q 003645 633 SYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLL 671 (805)
Q Consensus 633 ~~~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~ 671 (805)
..+|+|.+.||+|.--.|.+..++.++. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 3599999999999988888888877543 45777777753
No 206
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=24.08 E-value=1e+03 Score=26.48 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=19.2
Q ss_pred HHcccCCChhHHHHHHHHhccccc
Q 003645 59 ILRPLRQPRVIAEITGGILLGPSA 82 (805)
Q Consensus 59 ll~~l~~P~iv~~ilaGiilGP~~ 82 (805)
+.-.+|+|+++.-+++|..++-++
T Consensus 90 iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 90 IVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344679999999999999998544
No 207
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.85 E-value=1.8e+02 Score=27.65 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 003645 561 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 619 (805)
Q Consensus 561 ~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdr 619 (805)
-.+.+.++.++.+++.||+|+..+ .+|.........+.+.+++-++-+++| +++|-
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~--m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DE 96 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLN--MDGTEGPRAELARKFAERLKKRFNLPV-VLWDE 96 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcC--CCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcC
Confidence 457899999999999999999764 345443333346778888888888998 77876
No 208
>PRK06801 hypothetical protein; Provisional
Probab=23.56 E-value=3.6e+02 Score=28.93 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=71.2
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
+++++..|-.+-... ..+...|++.|++.++.+||.-....-...| -..+....+...++++.||++=.|.|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~ 85 (286)
T PRK06801 13 ARKHGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGL 85 (286)
T ss_pred HHHCCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344556666666665 4889999999999999999988755432222 123777888999999999999999975
Q ss_pred CCCccc-ccCCcceEEEEeccCCc-ChHHHHHHHHHH---hhCCCeEE
Q 003645 622 GGTTQV-SASNVSYTITVLFFGGR-DDREALACGARM---AEHPGISF 664 (805)
Q Consensus 622 ~~~~~~-~~~~~~~~i~v~f~GG~-ddreAL~~a~rm---a~~~~v~l 664 (805)
. .... ...+...+-++ |.|.. +++|-++.++++ |+..++.+
T Consensus 86 ~-~e~i~~Ai~~GftSVm-~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 86 H-FEAVVRALRLGFSSVM-FDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred C-HHHHHHHHHhCCcEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3 0000 00001112222 34443 347777776554 66666643
No 209
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.53 E-value=2.2e+02 Score=30.02 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=26.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 671 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 671 (805)
.+++.|.||+|+-..|.++.+.... +.|+++..
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 3789999999999999998888776 66776654
No 210
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.51 E-value=1.8e+02 Score=27.19 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 559 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 559 ~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
....+.+.++.++.+++.||+|...+ .||.........+.+.+++-++-+.+| .++|--+
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~--~dG~~~~~a~~v~~f~~~L~~~~~~~v-~~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLN--MDGTEGPLTERAQKFANRLEGRFGVPV-VLWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCC--CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 35578899999999999999998765 355543334446777878777768888 5677643
No 211
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=23.47 E-value=6.9e+02 Score=24.26 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhccccc---cCCchhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003645 67 RVIAEITGGILLGPSA---LGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 119 (805)
Q Consensus 67 ~iv~~ilaGiilGP~~---lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 119 (805)
.-+..+++|+++||.. .+...+..+.+++... .++-.|.++--|..|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~-----~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGT-----VLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHHHH
Confidence 3577899999999953 2222333333332111 1223366667777887
No 212
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=23.30 E-value=8.3e+02 Score=25.17 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=24.4
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
-+.+.+||+++....--..+.++.+..+..++.+++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467788888877776666666666666666665554
No 213
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.94 E-value=5.1e+02 Score=28.44 Aligned_cols=131 Identities=18% Similarity=0.067 Sum_probs=66.5
Q ss_pred CccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEE
Q 003645 589 GSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIR 668 (805)
Q Consensus 589 g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr 668 (805)
|.++..-....++.+.|-+..+.++-|-+.-+.. + ...||.+-+|++++++++.+...+.. ++
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~--------~-------~~~~G~~~~e~~~~~~~l~~~G~vd~--i~ 247 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD--------E-------DTEGGLSPDEALEIAARLAAEGLIDY--VN 247 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh--------h-------ccCCCCCHHHHHHHHHHHHhcCCCCE--EE
Confidence 4455444456678888877776654332221111 0 13578888999999999988753331 22
Q ss_pred EeecccccC-C-c-cccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 003645 669 FLLAADAIG-N-T-VSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 740 (805)
Q Consensus 669 ~~~~~~~~~-~-~-~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiiVGr~~ 740 (805)
+........ + . ...........+-++.+++|+.. +..|... =-+.+.++..+++++ ++.|++.+||.-
T Consensus 248 vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~-G~i~~~~~~~~~l~~-~~~D~V~~gR~~ 318 (343)
T cd04734 248 VSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHA-GRIRDPAEAEQALAA-GHADMVGMTRAH 318 (343)
T ss_pred eCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEee-CCCCCHHHHHHHHHc-CCCCeeeecHHh
Confidence 211100000 0 0 00001111222345666676543 2223322 112345666566643 349999999986
No 214
>PRK01658 holin-like protein; Validated
Probab=22.89 E-value=6.1e+02 Score=23.41 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHhhccCCCCchHHHHHHHHHhHHHHHHHHHHH--Hhccccccccccc
Q 003645 272 YVCATLAAVLAAGFITDAIGIH---AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV--SSGLKTNIATIQG 346 (805)
Q Consensus 272 ~~~~~l~~~l~~~~~ae~~g~~---~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlfF~--~~Gl~~dl~~l~~ 346 (805)
.+...++..++.-.++..++++ +++|-.+.=+.+- ......+..++-.++. -=-+|+||+ .+|.--..+.+..
T Consensus 9 ~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~-~~~ik~~~v~~~a~~L-l~~m~llFVPa~VGi~~~~~ll~~ 86 (122)
T PRK01658 9 QIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLS-FKILKLKWIELGAETL-LAELPLFFIPSAVGVMNYGDFLSS 86 (122)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-hCCcCHHHHHHHHHHH-HHHHHHHHHHhhhHHHHhHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 003645 347 LQSWGLLALVILTACLGKIVGTFVVSLSFKVPLRE 381 (805)
Q Consensus 347 ~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~ 381 (805)
+.|..++++++..++.=.+.++...+..+...++
T Consensus 87 -~~~~il~~ivvsT~l~l~vtg~~~~~l~~~~~~~ 120 (122)
T PRK01658 87 -KGISLFLVVVISTFVVMIVTGYLTQLLAKRKERE 120 (122)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 215
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=22.89 E-value=2.9e+02 Score=30.57 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=59.8
Q ss_pred cchHHHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCcccccc-CCc-cc---------cccchhH
Q 003645 531 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LE---------TTRSDFR 599 (805)
Q Consensus 531 ~~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~-~g~-~~---------~~~~~~~ 599 (805)
.+++.+-++. +++++..|-.+-..+ ..+...+++.|++.++.+||.-..+.-.. .|. ++ -+...+.
T Consensus 12 ~~~~~~lL~~-A~~~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 12 GDDVHKLFQY-AKENNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 3455555544 344455555666665 58899999999999999999887654322 110 11 0112266
Q ss_pred HHHHHHhhcCCCceEEEecCCCC
Q 003645 600 WVNQRVLKHAPCSVGILIDRGLG 622 (805)
Q Consensus 600 ~vn~~Vl~~ApcsVgIlvdrg~~ 622 (805)
...+...+++++||++=.|.|.+
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 77888999999999999999854
No 216
>PRK10711 hypothetical protein; Provisional
Probab=22.78 E-value=8.6e+02 Score=25.16 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=23.4
Q ss_pred cCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003645 121 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 156 (805)
Q Consensus 121 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 156 (805)
-+.+.+||+++....--..+.++.++.+..++.+++
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457778888777766556666666666665555554
No 217
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=22.46 E-value=4.1e+02 Score=25.89 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred eccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEecCh
Q 003645 639 LFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNT 718 (805)
Q Consensus 639 ~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~~ 718 (805)
+..||- ..-.+.+|+.|+++...++-++.=.+ ..+...++.+++++.. ..++.|...-+.|.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~--------------~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSG--------------APSAEAEAAIRELESA---GARVEYVQCDVTDP 65 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSG--------------GGSTTHHHHHHHHHHT---T-EEEEEE--TTSH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCC--------------CccHHHHHHHHHHHhC---CCceeeeccCccCH
Confidence 345554 66889999999999877776655321 1122345688888765 35799999999999
Q ss_pred HHHHHHHHhccC----CCEEEEccCC
Q 003645 719 AETIAVIREVSR----CNLLLVGRMP 740 (805)
Q Consensus 719 ~e~~~~i~~~~~----~DLiiVGr~~ 740 (805)
+++..++.+... -|-+|-+.+.
T Consensus 66 ~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 66 EAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp HHHHHHHHTSHTTSS-EEEEEE----
T ss_pred HHHHHHHHHHHhccCCcceeeeeeee
Confidence 999999887754 3556666554
No 218
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=22.32 E-value=5.4e+02 Score=30.93 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH-HHHHHHHcc---cCCChhHHH-HHHHHhccccccCCchhhhcccCCCCcHHHHH
Q 003645 29 FQGDSPLDFALPLAILQICLVILLT-RGLAFILRP---LRQPRVIAE-ITGGILLGPSALGRSERFLQAVFPPKSQTVLD 103 (805)
Q Consensus 29 ~~~~~pl~~~~~~~l~~i~lil~~~-~~~~~ll~~---l~~P~iv~~-ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~ 103 (805)
++.-||+ ...+.+--..++.+++| .+.|+.=++ .++|.-+.+ -...-++|+....+...|.+ ..+-.
T Consensus 460 L~sl~p~-s~al~~AAiaGV~LF~SglIaG~~dN~~~y~rl~~rl~~hp~L~~~lg~~r~~r~A~y~~-------~N~g~ 531 (643)
T PF10136_consen 460 LHSLDPF-SPALLYAAIAGVWLFLSGLIAGYFDNWFVYNRLPERLRHHPRLKRLLGARRAQRLADYVE-------RNLGG 531 (643)
T ss_pred HHhcCcc-ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCHHHHHHhChHHHHHhCHHHHHHHHHHHH-------HHhHH
Confidence 3467888 34444444444444444 444544332 234433332 12334445444333332221 11223
Q ss_pred HHHHHHHHH-------HHHHHhhccCchhHH
Q 003645 104 TLANLGLIF-------FMFLVGLELDPKSLR 127 (805)
Q Consensus 104 ~l~~lgl~~-------~lF~~Gle~d~~~l~ 127 (805)
..+++.+.+ +-...|+-+|++.+.
T Consensus 532 l~gN~~fG~lLG~t~~iG~~~GLPLDIRHVt 562 (643)
T PF10136_consen 532 LAGNFSFGFLLGMTPAIGYFFGLPLDIRHVT 562 (643)
T ss_pred HHHHHHHHHHHhhHHHHHHHcCCCcchhhhh
Confidence 344444443 336667777766553
No 219
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=22.01 E-value=1.2e+03 Score=26.48 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=49.7
Q ss_pred CchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHH
Q 003645 122 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRM 201 (805)
Q Consensus 122 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 201 (805)
|.+.+.|.+++.+........+...+|..++..+.+..+.+.... ..--. ..+.+.....+. ++.++..=.
T Consensus 67 ~~k~~gr~g~ktl~yf~~tt~~A~~iGl~~~~~~~Pg~g~~~~~~--~~~~~----~~~~~~~~~~l~--~iiP~ni~~- 137 (415)
T COG1301 67 DLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPA--TLDTG----AESEVSILDFLL--DIIPTNIFG- 137 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCcc--ccCCc----ccccchHHHHHH--hhcCCChHh-
Confidence 577888888888877777777777788877777765432211100 00000 000000233332 345554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003645 202 AMSAAAVNDVAAWILLALAVALS 224 (805)
Q Consensus 202 ~ls~a~i~D~~~~~ll~i~~~~~ 224 (805)
+++. +|++.+++++++..+.
T Consensus 138 a~a~---g~vLqil~fail~G~a 157 (415)
T COG1301 138 ALAE---GNVLQILFFAILFGLA 157 (415)
T ss_pred HhcC---CChHHHHHHHHHHHHH
Confidence 2222 3899999988877654
No 220
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.85 E-value=1.6e+02 Score=32.01 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEe---cChHHHHHHHHhcc------CCCEEEEccCC
Q 003645 692 EEVLSEFKLKTSRNGSVRYEERLV---RNTAETIAVIREVS------RCNLLLVGRMP 740 (805)
Q Consensus 692 ~~~l~e~~~~~~~~~~v~~~e~~v---~~~~e~~~~i~~~~------~~DLiiVGr~~ 740 (805)
.+++...+.++.. -++.+-...| +...+++.+|+.+. +||++|++||+
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 4566666665432 3455555566 55678888888764 28999999998
No 221
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.76 E-value=8.4e+02 Score=24.62 Aligned_cols=109 Identities=13% Similarity=0.006 Sum_probs=58.4
Q ss_pred CCcchHHHHHHHhhhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEec-CccccccCCccccccchhHHHHHHHhh
Q 003645 529 SNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILP-FHKHQRLDGSLETTRSDFRWVNQRVLK 607 (805)
Q Consensus 529 ~~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp-~h~~~~~~g~~~~~~~~~~~vn~~Vl~ 607 (805)
....++.+.+++.+++.+..+.-...-+ ..-.++.++.+.++++|-||+- .... . ... +.++
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~~~~----------~----~~~-~~~~ 74 (266)
T cd06278 12 PFYSELLEALSRALQARGYQPLLINTDD--DEDLDAALRQLLQYRVDGVIVTSGTLS----------S----ELA-EECR 74 (266)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEcCCC--CHHHHHHHHHHHHcCCCEEEEecCCCC----------H----HHH-HHHh
Confidence 3456777777777776666554332211 2245567777788899977763 2110 0 112 3345
Q ss_pred cCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHH-HHHHhhCCCeEEEEEE
Q 003645 608 HAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALAC-GARMAEHPGISFIVIR 668 (805)
Q Consensus 608 ~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~ddreAL~~-a~rma~~~~v~ltvvr 668 (805)
++..+| |++|+...+ . + +.+.+ .|++++-.. +..+.++..-++.++.
T Consensus 75 ~~~ipv-V~~~~~~~~-------~---~--~~~v~-~d~~~~g~~~~~~l~~~g~~~i~~i~ 122 (266)
T cd06278 75 RNGIPV-VLINRYVDG-------P---G--VDAVC-SDNYEAGRLAAELLLAKGCRRIAFIG 122 (266)
T ss_pred hcCCCE-EEECCccCC-------C---C--CCEEE-EChHHHHHHHHHHHHHCCCceEEEEc
Confidence 566676 778884321 1 1 12333 455554444 4556666555665554
No 222
>PRK04148 hypothetical protein; Provisional
Probab=21.76 E-value=1.3e+02 Score=28.24 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.4
Q ss_pred eEEecCCCChHHHHHHHHHhcCccEEEecCcccc
Q 003645 552 MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 585 (805)
Q Consensus 552 ~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~ 585 (805)
..++=|...|+..|.++|++.++|++|-|..+..
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3445566899999999999999999999996543
No 223
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.68 E-value=2.9e+02 Score=27.63 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=49.9
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEE-EEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEec---Ch
Q 003645 643 GRDDREALACGARMAEHPGISFIV-IRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVR---NT 718 (805)
Q Consensus 643 G~ddreAL~~a~rma~~~~v~ltv-vr~~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~---~~ 718 (805)
.|-|+-|++-|.||-+..-++=++ +..-+.. -.+.+..--.+ +.+|-...|..-. .+
T Consensus 39 NPF~eIAvEEAvrlKEk~l~eeviavs~G~aq-----------------s~~ilRt~LA~--Gadr~~hv~~~~~~~lep 99 (254)
T KOG3180|consen 39 NPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQ-----------------SQEILRTALAK--GADRGVHVEVVGAEELEP 99 (254)
T ss_pred CchHHHHHHHHHhHhhhhhhheEEEEecCccc-----------------hHHHHHHHHhc--cCCceeEEecCchhhccc
Confidence 466888999999998754433222 2221111 12233332222 2334444443221 12
Q ss_pred HHHHHHHHhcc---CCCEEEEccCC-------CchhccccccCCC
Q 003645 719 AETIAVIREVS---RCNLLLVGRMP-------DGELALALSTRSD 753 (805)
Q Consensus 719 ~e~~~~i~~~~---~~DLiiVGr~~-------~~~~~~gl~~w~e 753 (805)
-.+..++++.. +.||+++|+.. ..+++.||-+|-.
T Consensus 100 l~vAKiLk~~vekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ 144 (254)
T KOG3180|consen 100 LHVAKILKKLVEKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQ 144 (254)
T ss_pred hHHHHHHHHHHHhhcCCEEEEcccccccchhhhHHHHHHHhCCcc
Confidence 23344555443 39999999986 2578899999953
No 224
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=21.63 E-value=4.3e+02 Score=25.37 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 003645 635 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 670 (805)
Q Consensus 635 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 670 (805)
++++.|.||.|.--++.++.+. +.++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5789999999999999888763 3356666665
No 225
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.63 E-value=4.6e+02 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=21.2
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 003645 642 GGRDDREALACGARMAEHPGISFIVIRFL 670 (805)
Q Consensus 642 GG~ddreAL~~a~rma~~~~v~ltvvr~~ 670 (805)
=.|.|.|+++.|++|++ .+.+++++-+-
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~G 44 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVIG 44 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEEC
Confidence 34889999999999987 45566666653
No 226
>PRK08185 hypothetical protein; Provisional
Probab=20.27 E-value=2.9e+02 Score=29.54 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=70.0
Q ss_pred hhccCeEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 003645 542 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 621 (805)
Q Consensus 542 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~ 621 (805)
+++++..|-.+-..+ ..+...|++.|++.++.+||.-..+.-...| ..+....+...++++.||++=.|.|.
T Consensus 8 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~ 79 (283)
T PRK08185 8 AKEHQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGA 79 (283)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555666665 5889999999999999999988765432222 12677788899999999999889985
Q ss_pred CCCcccc-cCCcceEEEEeccCCc-ChHHHHHHHHHHh---hCCCeEE
Q 003645 622 GGTTQVS-ASNVSYTITVLFFGGR-DDREALACGARMA---EHPGISF 664 (805)
Q Consensus 622 ~~~~~~~-~~~~~~~i~v~f~GG~-ddreAL~~a~rma---~~~~v~l 664 (805)
+ ..... ..+...+- +.+.|.. +.+|=++.++++. ..-++.+
T Consensus 80 ~-~e~i~~ai~~Gf~S-VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 80 T-IEDVMRAIRCGFTS-VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred C-HHHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3 00000 00001111 3455553 4456666665554 5445555
Done!