Query 003645
Match_columns 805
No_of_seqs 324 out of 2156
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:08:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003645.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1694-1698//hhsearch_pdb/003645hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 1.0 1 1 198.4 6.6 302 100-435 58-383 (388)
2 3mt0_A Uncharacterized protein 1.0 1 1 184.6 21.3 263 461-781 8-278 (290)
3 3olq_A Universal stress protei 1.0 1 1 183.3 17.0 284 461-781 8-307 (319)
4 3loq_A Universal stress protei 1.0 1 1 182.4 15.3 269 460-781 22-292 (294)
5 3cis_A Uncharacterized protein 1.0 1 1 178.0 18.9 281 459-780 18-307 (309)
6 3ab8_A Putative uncharacterize 1.0 1 1 170.6 16.8 261 462-778 2-268 (268)
7 3s3t_A Nucleotide-binding prot 1.0 1 1 112.2 9.0 137 460-616 5-145 (146)
8 1tq8_A Hypothetical protein RV 1.0 1 1 109.5 9.8 141 458-618 15-158 (163)
9 3fg9_A Protein of universal st 1.0 1 1 109.4 6.1 139 458-616 13-155 (156)
10 3fdx_A Putative filament prote 1.0 1 1 109.1 9.8 136 461-616 2-142 (143)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=1.00 E-value=1 Score=198.42 Aligned_cols=302 Identities=18% Similarity=0.208 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHH----HHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899999999999999987323590358----84002--488999999999999999999997753206986257999999
Q 003645 100 TVLDTLANLGLIFFMFLVGLELDPKSL----RQTGK--KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 173 (805)
Q Consensus 100 ~~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 173 (805)
.....+.+-.+.++||.+|+|+|.+.+ ++.+| .....+..++++|+++.. .+.. +. +.+....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~----~~---~~~~~gw 126 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY----AD---PITREGW 126 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC----SS---TTHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC----CC---HHHHHHH
T ss_conf 69999865749999999999821998431122245678999999998999999999----9814----87---2565556
Q ss_pred HHHHHCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984310999999998638-568804899999999978999999999999961699982589999999999999999568
Q 003645 174 VALSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 252 (805)
Q Consensus 174 ~~ls~Ts~~vv~~il~el~-ll~s~~g~l~ls~s~i~D~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 252 (805)
.+...||.+....++..++ ..++..+..+++.+++||+.+|+++++... ++. . ...+...++..+..
T Consensus 127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~---~-~~~l~~~~~~~~~~----- 194 (388)
T 1zcd_A 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDL---S-MASLGVAAVAIAVL----- 194 (388)
T ss_dssp SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCC---C-HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC---C-HHHHHHHHHHHHHH-----
T ss_conf 99999799999999999974276179999999999999999999987774---875---3-89999999999999-----
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 999999978017987643779999999999999999953447899999886456998----7068999998876887779
Q 003645 253 PTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFL 328 (805)
Q Consensus 253 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgaf~aGl~l~~~~----~~~~~l~~~l~~~~~~~~~ 328 (805)
+..+|.. .+....+..+ . +.+.+.++..|.|..+|+|++|+++|+.+ +..+++++++++++..+++
T Consensus 195 ----~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il 264 (388)
T 1zcd_A 195 ----AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL 264 (388)
T ss_dssp ----HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred ----HHHHHHC----CHHHHHHHHH-H-HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----9998865----3458999999-9-9999999982852999999999854677766789899999998998999999
Q ss_pred HHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-98732410200000024688999999999999899999999850----------9996899999999745589999
Q 003645 329 PLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVEL 397 (805)
Q Consensus 329 plf-F~~~G~~~~~~~l~~~~~~~~~~~i~~~~~~~K~l~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~l 397 (805)
|+| |+..|.++|......... .....+.+..+++|++|++..++.. +++|+|...+|++++.++++++
T Consensus 265 PlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 265 PLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp HHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred HHHHHHHCCEEECCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999984582423650664117-399999999999999999999999999666769999989999999998242058999
Q ss_pred HHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984113775--684579999999999999669999997
Q 003645 398 IVLNIGKDRKV--LNDQVFAIMILMAVVTTFMTTPLVMAV 435 (805)
Q Consensus 398 ~l~~~~~~~~~--i~~~~~~~lv~~~ii~t~i~~pl~~~~ 435 (805)
.+++.+.+.+. ..++.+..+++.+++++.+.+.++++.
T Consensus 344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~ 383 (388)
T 1zcd_A 344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR 383 (388)
T ss_dssp HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999862588155676599999999999999999999986
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=184.63 Aligned_cols=263 Identities=12% Similarity=0.071 Sum_probs=186.8
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 16999740589822399999984258878993589999531168752577886531089987677889995259999999
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 540 (805)
Q Consensus 461 lrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 540 (805)
-+||+|+|+++.+..++..+..++.. .+.+++++|+++ + . + .++.++.+.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~---~~a~l~ll~v~~-~----------------~--------~-~~~~l~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV---TQSHLHLLVCEK-R----------------R--------D-HSAALNDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH---HCCEEEEEEECS-S----------------S--------C-CHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---CCCEEEEEEEEC-C----------------H--------H-HHHHHHHHHH
T ss_conf 05999958985646999999999985---298499999608-4----------------8--------8-9999999999
Q ss_pred HHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 65215727998598338997389899998723965999527655556896334551028999998501998459995499
Q 003645 541 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 620 (805)
Q Consensus 541 ~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgIlvdrg 620 (805)
.....++.+++.+..+ +++.+.|++.|++.++||||||+|++.++++.+ +|++.++++++++|||.++...
T Consensus 59 ~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~- 129 (290)
T 3mt0_A 59 ELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTA- 129 (290)
T ss_dssp HHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCC-
T ss_pred HHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCC------CCHHHHHHHHCCCCCEEEECCC-
T ss_conf 8762797589999967--987999999998459999999145687322102------1777899986399878995278-
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC-CCCCCCCCCHH
Q ss_conf 9987543468741179994068917-------399999999871089839999997523433487444-57767623279
Q 003645 621 LGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VDMAGNASMDE 692 (805)
Q Consensus 621 ~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rma~~~~v~ltvi~~~~~~~~~~~~~~-~~~~~~~~~d~ 692 (805)
. .. ..++|+++++|.++ ++.|+.+|.++|+..+++++++|+.++......... ...+..++..+
T Consensus 130 ~-------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T 3mt0_A 130 R-------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYR 201 (290)
T ss_dssp S-------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHH
T ss_pred C-------CC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7-------77-788399997788765046678999999999999873986999999667643345722578999999999
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCHHHHCCCCCCCE
Q ss_conf 99999983127999759999981694899999973029879998058993000011457889854411010004899941
Q 003645 693 EVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTA 772 (805)
Q Consensus 693 ~~l~e~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiivGr~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~ 772 (805)
+.++++..++.. ..+ ......++..+.+....+..++||++||+++ .+++.+| -+|.+.+.+...- . +
T Consensus 202 ~~l~~~~~~~g~-~~~-~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~~-~-~ 269 (290)
T 3mt0_A 202 EACRTFQAEYGF-SDE-QLHIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDTL-E-S 269 (290)
T ss_dssp HHHHHHHHHHTC-CTT-TEEEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTTC-S-S
T ss_pred HHHHHHHHHCCC-CCC-EEEEECCCHHHHHHHHHHHCCCCEEEECCCC----CCCCCCE----ECCHHHHHHHHCC-C-C
T ss_conf 999999998199-943-6999335888999999876299999978888----7677553----4355899999628-9-9
Q ss_pred EEEEEEEEC
Q ss_conf 289997423
Q 003645 773 SVLIIQQYS 781 (805)
Q Consensus 773 svLvvqq~~ 781 (805)
+||||..+.
T Consensus 270 pVLvv~~~~ 278 (290)
T 3mt0_A 270 DVLVLKPDD 278 (290)
T ss_dssp EEEEECCHH
T ss_pred CEEEECCCC
T ss_conf 889989877
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=1.00 E-value=1 Score=183.28 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=186.7
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 1699974058982239999998425887899358999953116875-257788653108998767788999525999999
Q 003645 461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERS-SAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 539 (805)
Q Consensus 461 lrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 539 (805)
-+||+|+|+++++..++..+..++. ..+.+++++|+++..... ................ .+..++.++.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ---RNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGV-----INQKTAWIKQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH---HHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HCCCEEEEEEEECCCCHHHCCCCCHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 6399997897565899999999999---72992899997236443221236734589999999-----999999999999
Q ss_pred HHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 96521572799859833899738989999872396599952765555689633455102899999850199845999549
Q 003645 540 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 619 (805)
Q Consensus 540 ~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgIlvdr 619 (805)
......++++++.+... +++.+.|++.|++.++||||||+|++.++++.+ +|++.++|+++++|||.+...+
T Consensus 80 ~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 80 RYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCHHHCCC------CCCCHHHHHHCCCCCEEEECCC
T ss_conf 98750598389999965--985999999998529998999267676222000------0664788974599878996376
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCCCCCCCCCC-----
Q ss_conf 99987543468741179994068917-------399999999871089--8399999975234334874445776-----
Q 003645 620 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMA----- 685 (805)
Q Consensus 620 g~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rma~~~--~v~ltvi~~~~~~~~~~~~~~~~~~----- 685 (805)
. ....++|+++++|.++ ++.|+.+|.++++.. +++++++|+.++............+
T Consensus 152 ~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3olq_A 152 E---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYN 222 (319)
T ss_dssp C---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHH
T ss_pred C---------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHCCCCCCCHHHHH
T ss_conf 5---------6667808999789874336889989999999999974568970899996158535443148854578999
Q ss_pred -CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf -7623279999999831279997599999816948999999730298799980589930000114578898544110100
Q 003645 686 -GNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLL 764 (805)
Q Consensus 686 -~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiivGr~~~~~~~~gl~~w~e~peLG~igd~l 764 (805)
..++..++.++++..++.. ..+. .....++..+.+....+..++||++||+++ ..++.+| -+|.+.+.+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~-~~~~-~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g----~~~~~~~----~~Gsv~~~v 292 (319)
T 3olq_A 223 NALRGQHLIAMKELRQKFSI-PEEK-THVKEGLPEQVIPQVCEELNAGIVVLGILG----RTGLSAA----FLGNTAEQL 292 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CGGG-EEEEESCHHHHHHHHHHHTTEEEEEEECCS----CCSTHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC-CCCC-EEEECCCCHHHHHHHHHHHCCCEEEEECCC----CCCCCCC----CCCHHHHHH
T ss_conf 99999999999999998289-9561-798348808999999987389999995057----6677640----021799999
Q ss_pred CCCCCCCEEEEEEEEEC
Q ss_conf 04899941289997423
Q 003645 765 TSLEFSTASVLIIQQYS 781 (805)
Q Consensus 765 as~~~~~~svLvvqq~~ 781 (805)
...- . ++||||..+.
T Consensus 293 l~~~-~-~pVLvv~~~~ 307 (319)
T 3olq_A 293 IDHI-K-CDLLAIKPDG 307 (319)
T ss_dssp HTTC-C-SEEEEECCTT
T ss_pred HHHC-C-CCEEEECCCC
T ss_conf 8518-9-9889989888
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=182.37 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=182.9
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 61699974058982239999998425887899358999953116875257788653108998767788999525999999
Q 003645 460 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 539 (805)
Q Consensus 460 elrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 539 (805)
.-+||+|+|+++.+..++..+..++. ..+.+++++|+++.+...... .. .......+ ...+..++.++.+.
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~~a~l~ll~v~~~~~~~~~~----~~-~~~~~~~~-~~~~~~~~~l~~~~ 92 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKK---VGVEEIGVLFVINLTKLSTVS----GG-IDIDHYID-EMSEKAEEVLPEVA 92 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHH---TTCCEEEEECCEECTTC---------C-CCTTHHHH-HHHHHHHHHHHHHH
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHHH---HCCCEEEEEEEECCCCCCCCC----CC-CCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 53089951798889999999999875---169889999982476644445----56-46899999-99999999999999
Q ss_pred HHHHCCCEEEEE-EEE-ECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 965215727998-598-338997389899998723965999527655556896334551028999998501998459995
Q 003645 540 AFQQLSRVSVRP-MTA-ISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 617 (805)
Q Consensus 540 ~~~~~~~v~v~~-~~~-vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgIlv 617 (805)
+..+..++.+++ .+. .+ ++.+.| .|++.++||||||.|++.++++.+ +|++.++|++++||||.++.
T Consensus 93 ~~~~~~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 93 QKIEAAGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HHHHHTTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHCCCCCCEEEEECCC---CHHHHE--EECCCCCCEEEECCCCCCCCCCEE------ECCHHHHHHHCCCCCEEEEC
T ss_conf 9999769985046761357---803712--554589999998479876531456------44278999745799889966
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 49999875434687411799940689173999999998710898399999975234334874445776762327999999
Q 003645 618 DRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSE 697 (805)
Q Consensus 618 drg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvi~~~~~~~~~~~~~~~~~~~~~~~d~~~l~e 697 (805)
.. .. .....++|+++++|.+.+++|+.+|.++++..+++++++++.++.. .++.-+++.+.
T Consensus 162 ~~-~~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------------~~~~l~~~~~~ 222 (294)
T 3loq_A 162 HD-MV------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------------KTADLRVMEEV 222 (294)
T ss_dssp CC-TT------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------------CHHHHHHHHHH
T ss_pred CC-CC------CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH------------HHHHHHHHHHH
T ss_conf 75-56------6766777999978987999999999997630399899999745803------------89999999999
Q ss_pred HHHHCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
Q ss_conf 98312799975999998169489999997302987999805899300001145788985441101000489994128999
Q 003645 698 FKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 777 (805)
Q Consensus 698 ~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiivGr~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 777 (805)
++... -.+. .....++..+.+....+..++||++||+++ .+++.+| -+|.+.+.++..- . ++||||
T Consensus 223 l~~~~---~~~~-~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~----~~~~~~~----~~Gs~~~~vl~~~-~-~pvLvv 288 (294)
T 3loq_A 223 IGAEG---IEVH-VHIESGTPHKAILAKREEINATTIFMGSRG----AGSVMTM----ILGSTSESVIRRS-P-VPVFVC 288 (294)
T ss_dssp HHHTT---CCEE-EEEECSCHHHHHHHHHHHTTCSEEEEECCC----CSCHHHH----HHHCHHHHHHHHC-S-SCEEEE
T ss_pred HHHCC---CCEE-EEEECCCHHHHHHHHHHHCCCCEEEEECCC----CCCCCCE----EECCHHHHHHHCC-C-CCEEEE
T ss_conf 98769---9579-999369878999999976595999995799----9876535----6276899999649-9-989997
Q ss_pred EEEC
Q ss_conf 7423
Q 003645 778 QQYS 781 (805)
Q Consensus 778 qq~~ 781 (805)
.+..
T Consensus 289 ~~~~ 292 (294)
T 3loq_A 289 KRGD 292 (294)
T ss_dssp CSCT
T ss_pred CCCC
T ss_conf 8999
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=1.00 E-value=1 Score=178.01 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=180.7
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHH-HHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 761699974058982239999998425887899358999953116875257-7886531089987677889995259999
Q 003645 459 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAI-LMVHKARRNGLPFWNRGRQSNPNHIVVA 537 (805)
Q Consensus 459 ~elrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 537 (805)
..-+||+|+|+++.+..++..+..++.. .+.+++++|+++......+. ......... . .+..++.++.
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~l~~ 86 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAEL---RKIPLTLVHAVSPEVATWLEVPLPPGVLRW---Q-----QDHGRHLIDD 86 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHH---HTCCEEEEEECCCCCCCTTCCCCCHHHHHH---H-----HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCCCCHHHHH---H-----HHHHHHHHHH
T ss_conf 7870899979987799999999999986---699299999965754445667788205689---9-----9999999999
Q ss_pred HHHHHHC-----CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9996521-----57279985983389973898999987239659995276555568963345510289999985019984
Q 003645 538 FEAFQQL-----SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 612 (805)
Q Consensus 538 ~~~~~~~-----~~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCs 612 (805)
+.+..+. .++.+++.+..+ ++.+.|++.|+ ++||||||.|++.++++.+ +|++.++|+++++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSC
T ss_pred HHHHHHHHCCCCCCCEEEEEEECC---CHHHHHHHHHC--CCCEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCC
T ss_conf 999998731568895389999448---98999998725--8999998789986544430------574799999848997
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 59995499998754346874117999406891739999999987108983999999752343348744457767623279
Q 003645 613 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDE 692 (805)
Q Consensus 613 VgIlvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvi~~~~~~~~~~~~~~~~~~~~~~~d~ 692 (805)
|.++...... ......++|+++++|.+.++.|+.+|.++++..+.+++++++.++.... .....+.+..++..+
T Consensus 156 Vlvv~~~~~~-----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~ 229 (309)
T 3cis_A 156 VVIIHDEDSV-----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EWPGIDWPATQSMAE 229 (309)
T ss_dssp EEEECTTCCC-----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-TCSSCCHHHHHHHHH
T ss_pred EEEECCCCCC-----CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC-CCCCCCHHHHHHHHH
T ss_conf 8997477666-----7777787399992798689999999999987569989999996165446-778545788999999
Q ss_pred HHHHHHHHHCC---CCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 99999983127---999759999981694899999973029879998058993000011457889854411010004899
Q 003645 693 EVLSEFKLKTS---RNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEF 769 (805)
Q Consensus 693 ~~l~e~~~~~~---~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiivGr~~~~~~~~gl~~w~e~peLG~igd~las~~~ 769 (805)
+.+++...... ..-.+.. +...++..+. +++...++||++||+++ .+++.++ -+|.+.+.+...-
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~--I~~~a~~adliV~G~~~----~~~~~~~----l~Gsv~~~vl~~~- 297 (309)
T 3cis_A 230 QVLAERLAGWQERYPNVAITR-VVVRDQPARQ--LVQRSEEAQLVVVGSRG----RGGYAGM----LVGSVGETVAQLA- 297 (309)
T ss_dssp HHHHHHHTTHHHHCTTSCEEE-EEESSCHHHH--HHHHHTTCSEEEEESSC----SSCCTTC----SSCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCCCEEE-EEECCCHHHH--HHHHHCCCCEEEECCCC----CCCCCCC----CCCCHHHHHHHCC-
T ss_conf 999999999886489971899-9971798999--99863779999988899----8776413----3274899998569-
Q ss_pred CCEEEEEEEEE
Q ss_conf 94128999742
Q 003645 770 STASVLIIQQY 780 (805)
Q Consensus 770 ~~~svLvvqq~ 780 (805)
. ++||||..+
T Consensus 298 ~-~pVlvv~~~ 307 (309)
T 3cis_A 298 R-TPVIVARES 307 (309)
T ss_dssp S-SCEEEECC-
T ss_pred C-CCEEEECCC
T ss_conf 9-888995798
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=1.00 E-value=1 Score=170.61 Aligned_cols=261 Identities=15% Similarity=0.073 Sum_probs=169.1
Q ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCC-C----CCCCCCCCCCHHHH
Q ss_conf 699974058982239999998425887899358999953116875257788653108998-7----67788999525999
Q 003645 462 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLP-F----WNRGRQSNPNHIVV 536 (805)
Q Consensus 462 rILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~i~~ 536 (805)
+||+|+|+++.+..++..+..++.. .+.+++++|+++.................... . .+ ...+..++.++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 77 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK---LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELER-ALALRGEAVLE 77 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH---HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 2899847877789999999999997---0993999999505776655434706778998877788889-99999999999
Q ss_pred HHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999652157279985983389973898999987239659995276555-568963345510289999985019984599
Q 003645 537 AFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ-RLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 537 ~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~-~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgI 615 (805)
.+.+..+..++++++.+..+ ++.+.|++. +.++||||||.|++. ++++.+ +||+.++|++++||||.+
T Consensus 78 ~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 78 RVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEEECC---CHHHHHHHH--CCCCCEEEEECCCCCCCCCCCC------CCHHHHHHHHHCCCCEEE
T ss_conf 99999985799718987069---878999961--4699889992667876533345------466699999847998899
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 95499998754346874117999406891739999999987108983999999752343348744457767623279999
Q 003645 616 LIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 695 (805)
Q Consensus 616 lvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rma~~~~v~ltvi~~~~~~~~~~~~~~~~~~~~~~~d~~~l 695 (805)
.... . . ..++|+++++|.++++.|+.+|.++++..+++++++++.++.... ++..+++.
T Consensus 147 v~~~-~-------~--~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----------~~~l~~~~ 205 (268)
T 3ab8_A 147 APGE-P-------V--ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPARA-----------EAWALEAE 205 (268)
T ss_dssp ECSS-C-------C--CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHHH-----------HHHHHHHH
T ss_pred ECCC-C-------C--CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH-----------HHHHHHHH
T ss_conf 7888-7-------8--777899997898789999999999652079879999972847889-----------99999999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf 99983127999759999981694899999973029879998058993000011457889854411010004899941289
Q 003645 696 SEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVL 775 (805)
Q Consensus 696 ~e~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~DLiivGr~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svL 775 (805)
+.+... .-.+.+ ....++..+ .+++...++||++||+ ++.+| -+|.+.+.+...- . ++||
T Consensus 206 ~~l~~~---~~~~~~-~~~~g~~~~--~i~~~a~~~dliV~G~--------~~~~~----~~Gs~~~~vl~~~-~-~pvl 265 (268)
T 3ab8_A 206 AYLRDH---GVEASA-LVLGGDAAD--HLLRLQGPGDLLALGA--------PVRRL----VFGSTAERVIRNA-Q-GPVL 265 (268)
T ss_dssp HHHHHT---TCCEEE-EEECSCHHH--HHHHHCCTTEEEEEEC--------CCSCC----SSCCHHHHHHHHC-S-SCEE
T ss_pred HHHHHC---CCCEEE-EEECCCHHH--HHHHHHHHCCEEEECC--------CCCCC----EECCHHHHHHHCC-C-CCEE
T ss_conf 999875---994699-991798599--9999997699999998--------61326----8662799998559-9-9889
Q ss_pred EEE
Q ss_conf 997
Q 003645 776 IIQ 778 (805)
Q Consensus 776 vvq 778 (805)
||.
T Consensus 266 vv~ 268 (268)
T 3ab8_A 266 TAR 268 (268)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 939
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=112.22 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=102.7
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHH--HHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 616999740589822399999984258878993589999531168752577--886531089987677889995259999
Q 003645 460 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL--MVHKARRNGLPFWNRGRQSNPNHIVVA 537 (805)
Q Consensus 460 elrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 537 (805)
--+||+|+|+++.+..++..+..++. ..+.+++++|+++.+....... ........ . .+..++.++.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 73 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQ---RHQANLTALYVVDDSAYHTPALDPVLSELLDA-E-------AAHAKDAMRQ 73 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHH---HHTCEEEEEEEEECCCCCCGGGHHHHHHHHHH-H-------HHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH---HCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH-H-------HHHHHHHHHH
T ss_conf 66699974799889999999999998---61998999999627544554444240899999-9-------9999999999
Q ss_pred HHHHHHCCCE-EEEEEEEECCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9996521572-79985983389973898999-987239659995276555568963345510289999985019984599
Q 003645 538 FEAFQQLSRV-SVRPMTAISSMSDMHEDICT-TAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 538 ~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~-~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgI 615 (805)
+.+..+..++ .+++.+..+ ++.+.|++ +|++.++||||||.|++.++.+.+ +||+.++|++++||||.|
T Consensus 74 ~~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 74 RQQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHCCCCCEEEEEECC---CHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEE------ECCHHHHHHCCCCCCEEE
T ss_conf 99999865975259999538---848999999886539999998899998761278------734588996149999898
Q ss_pred E
Q ss_conf 9
Q 003645 616 L 616 (805)
Q Consensus 616 l 616 (805)
+
T Consensus 145 V 145 (146)
T 3s3t_A 145 I 145 (146)
T ss_dssp E
T ss_pred E
T ss_conf 4
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=1.00 E-value=1 Score=109.50 Aligned_cols=141 Identities=10% Similarity=0.076 Sum_probs=101.8
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEE--EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 8761699974058982239999998425887899358999--95311687525778865310899876778899952599
Q 003645 458 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL--HLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIV 535 (805)
Q Consensus 458 ~~elrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~L--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 535 (805)
....+||+|+|+++.+..++..+..++ + .+.+++++ |+++.+....+.... .. ..... ..+..++.+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA---~-~~a~l~ll~a~v~~~~~~~~~~~~~-~~-~~~~~-----~~~~~~~~l 83 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIA---G-ADAKLIIASAYLPQHEDARAADILK-DE-SYKVT-----GTAPIYEIL 83 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHH---T-TTSEEEEEEECCC---------------------------CCTHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHH---C-CCCEEEEEEEEECCCCCCCCCCCCC-CH-HHHHH-----HHHHHHHHH
T ss_conf 247789998089989999999999982---8-9989999986632675445455656-37-89999-----999999999
Q ss_pred HHHHHHHHCCCEE-EEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9999965215727-998598338997389899998723965999527655556896334551028999998501998459
Q 003645 536 VAFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 614 (805)
Q Consensus 536 ~~~~~~~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVg 614 (805)
+.+.+..+..+++ +++.+..+ ++.+.|+++|++.++||||||.|++.++.+.+ +||+.++|++++||||.
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSva~~vl~~a~~PVl 154 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRL------LGSVPANVSRRAKVDVL 154 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH------TBBHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEEECC---CHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE------ECCHHHHHHHHCCCCEE
T ss_conf 9999999875998379998249---98999999997649999998899998631106------46288999986899889
Q ss_pred EEEC
Q ss_conf 9954
Q 003645 615 ILID 618 (805)
Q Consensus 615 Ilvd 618 (805)
|+..
T Consensus 155 vV~~ 158 (163)
T 1tq8_A 155 IVHT 158 (163)
T ss_dssp EECC
T ss_pred EEEC
T ss_conf 9858
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=1.00 E-value=1 Score=109.35 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCCEEEEEEE--CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 87616999740--5898223999999842588789935899995311687525778865310899876778899952599
Q 003645 458 KAQFRILACFH--SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIV 535 (805)
Q Consensus 458 ~~elrILv~i~--~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 535 (805)
..--+||+|+| +++.+..++..+..++.. .+.+++++|+++............+.... . .+..++.+
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l 81 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHD---YDVPLGICSVLESEDINIFDSLTPSKIQA-K-------RKHVEDVV 81 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHH---HTCCEEEEEEECCCCTTCCCSSHHHHHHH-H-------HHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEEEECCCCCCCCCCCHHHHHH-H-------HHHHHHHH
T ss_conf 5675499997899998999999999999976---59989999997378756544479789999-9-------99999999
Q ss_pred HHHHHHHHCCCE-EEEEEEEECCCCCHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 999996521572-799859833899738989999-872396599952765555689633455102899999850199845
Q 003645 536 VAFEAFQQLSRV-SVRPMTAISSMSDMHEDICTT-AESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSV 613 (805)
Q Consensus 536 ~~~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~~-A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsV 613 (805)
+.+.+..+..++ .+++.+..+ +++.+.|++. |++.++||||||.|++.+++ .+ +||+.++|++++||||
T Consensus 82 ~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PV 152 (156)
T 3fg9_A 82 AEYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISV 152 (156)
T ss_dssp HHHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEE
T ss_pred HHHHHHHHHCCCCCEEEEEEEC--CCHHHHHHHHHHHHCCCCEEEECCCCCCCCC-EE------ECCHHHHHHHHCCCCE
T ss_conf 9999999876997468999848--9878999998887659899998888998600-04------4234899997099998
Q ss_pred EEE
Q ss_conf 999
Q 003645 614 GIL 616 (805)
Q Consensus 614 gIl 616 (805)
.++
T Consensus 153 lvV 155 (156)
T 3fg9_A 153 IVV 155 (156)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 995
No 10
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=1.00 E-value=1 Score=109.14 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=99.6
Q ss_pred CEEEEEEECCCC--HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 169997405898--223999999842588789935899995311687525778865310899876778899952599999
Q 003645 461 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 538 (805)
Q Consensus 461 lrILv~i~~~~~--~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 538 (805)
-+||+|+|+++. +..++..+..++. ..+.+++++|+++.............. . .... .+..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR---IDDAEVHFLTVIPSLPYYASLGMAYTA--E-LPGM----DELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH---HHTCEEEEEEEECC-------------------CH----HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHH---HCCCEEEEEEEECCCCCCCCCCCCCCC--H-HHHH----HHHHHHHHHHH
T ss_conf 879998558807669999999999998---449869999995588654433445651--2-4569----99999999999
Q ss_pred HHHHHCC---CEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9965215---7279985983389973898999987239659995276555568963345510289999985019984599
Q 003645 539 EAFQQLS---RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615 (805)
Q Consensus 539 ~~~~~~~---~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCsVgI 615 (805)
+++.++. ++.+++.+..+ ++.+.|+++|++.++||||||.|+ .++.+.+ +||+.++|++++||||.+
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHCCCCCCCEEEEEEEC---CHHHHHHHHHHHHCCCEEEEECCC-CCCEEEE------ECCHHHHHHHHCCCCEEE
T ss_conf 999987077777359999835---859999999998589999994799-9973046------461899999848997899
Q ss_pred E
Q ss_conf 9
Q 003645 616 L 616 (805)
Q Consensus 616 l 616 (805)
+
T Consensus 142 v 142 (143)
T 3fdx_A 142 V 142 (143)
T ss_dssp E
T ss_pred E
T ss_conf 5
Done!