BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003648
(805 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/678 (57%), Positives = 493/678 (72%), Gaps = 4/678 (0%)
Query: 97 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
P LP N+ +DTW +LE+LYQAV +LC HK+ LY+++ + CE
Sbjct: 52 PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACE 111
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
+H+ A I S D V+FL + CWQD C QM+MIR I L+LDRTYV Q + S+W
Sbjct: 112 DHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIW 171
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
DMGL+LFR ++ S V+ KT+ G+L +IERER GEAVDR+LL LL M + L +Y +SF
Sbjct: 172 DMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSF 231
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
E FLE T+ YAAEG + MQ+ +VP+YL HV RL EE +R + YLD ST+KPLIA E
Sbjct: 232 ELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVE 291
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
+QLL H++AIL KG L+D +R DL +MY LFSRV ++L Q + YI+ G I
Sbjct: 292 KQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 351
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
V++ EKDKDMV LL+FK +D + E F KNE F N +K++FE IN R N+PAELIAK
Sbjct: 352 VINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAK 411
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
+D KLRAGNK ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 412 HVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDA 471
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSG-IEMSVHVLT 574
EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q ++ SG I+++V++LT
Sbjct: 472 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD--SGPIDLTVNILT 529
Query: 575 TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL 634
GYWPTY PM+V L E+ Q++FK FYL K+SGR+L WQ +LGH VLKAEF +GKKE
Sbjct: 530 MGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEF 589
Query: 635 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVE 694
VSLFQT+VL++FN+ SF++IK ATGIED ELRRTLQSLACGK RVL K PKG++VE
Sbjct: 590 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVE 649
Query: 695 DDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV 754
D D F+FN F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK
Sbjct: 650 DGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKT 709
Query: 755 LSHTLLITELFQQVLPPV 772
L H LL++EL+ Q+ PV
Sbjct: 710 LGHNLLVSELYNQLKFPV 727
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/678 (57%), Positives = 493/678 (72%), Gaps = 4/678 (0%)
Query: 97 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
P LP N+ +DTW +LE+LYQAV +LC HK+ LY+++ + CE
Sbjct: 35 PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACE 94
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
+H+ A I S D V+FL + CWQD C QM+MIR I L+LDRTYV Q + S+W
Sbjct: 95 DHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIW 154
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
DMGL+LFR ++ S V+ KT+ G+L +IERER GEAVDR+LL LL M + L +Y +SF
Sbjct: 155 DMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSF 214
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
E FLE T+ YAAEG + MQ+ +VP+YL HV RL EE +R + YLD ST+KPLIA E
Sbjct: 215 ELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVE 274
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
+QLL H++AIL KG L+D +R DL +MY LFSRV ++L Q + YI+ G I
Sbjct: 275 KQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 334
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
V++ EKDKDMV LL+FK +D + E F KNE F N +K++FE IN R N+PAELIAK
Sbjct: 335 VINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAK 394
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
+D KLRAGNK ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 395 HVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDA 454
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSG-IEMSVHVLT 574
EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q ++ SG I+++V++LT
Sbjct: 455 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS--DSGPIDLTVNILT 512
Query: 575 TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL 634
GYWPTY PM+V L E+ Q++FK FYL K+SGR+L WQ +LGH VLKAEF +GKKE
Sbjct: 513 MGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEF 572
Query: 635 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVE 694
VSLFQT+VL++FN+ SF++IK ATGIED ELRRTLQSLACGK RVL K PKG++VE
Sbjct: 573 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVE 632
Query: 695 DDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV 754
D D F+FN F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK
Sbjct: 633 DGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKT 692
Query: 755 LSHTLLITELFQQVLPPV 772
L H LL++EL+ Q+ PV
Sbjct: 693 LGHNLLVSELYNQLKFPV 710
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/677 (57%), Positives = 502/677 (74%), Gaps = 2/677 (0%)
Query: 97 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
P LP N+ ++TW +LE+LYQAV +LC +K+ NLY+++ + CE
Sbjct: 19 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICE 78
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
+HI A I S D V+FL ++RCWQ+ C QM+MIR I L+LDRTYV Q + S+W
Sbjct: 79 DHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIW 138
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
DMGL+LFR ++ S +V++KT+ G+L +IERER GEA+DR+LL LL M + L IY +SF
Sbjct: 139 DMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSF 198
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
E+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K LIAT E
Sbjct: 199 EQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVE 258
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+ G I
Sbjct: 259 KQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI 318
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
V++ EKDK MV LL+FK +D I + F KNE F N +K+AFE IN R N+PAELIAK
Sbjct: 319 VINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPNKPAELIAK 378
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
++D KLRAGNK ++EELE LDK++++FRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 379 YVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDA 438
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTT 575
EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q + +P IE++V++LT
Sbjct: 439 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN-VPGNIELTVNILTM 497
Query: 576 GYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELA 635
GYWPTY PM+V LP E+ Q+IFK FYL K+SGR+L WQ++LGHCVLKAEF +GKKEL
Sbjct: 498 GYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQ 557
Query: 636 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVED 695
VSLFQT+VL++FN+ ++ S ++IK ATGIED ELRRTLQSLACGK RVL K PKG+D+ED
Sbjct: 558 VSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIED 617
Query: 696 DDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVL 755
D F+ N+ F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK L
Sbjct: 618 GDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTL 677
Query: 756 SHTLLITELFQQVLPPV 772
SH LL++E++ Q+ PV
Sbjct: 678 SHNLLVSEVYNQLKFPV 694
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/677 (57%), Positives = 502/677 (74%), Gaps = 2/677 (0%)
Query: 97 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
P LP N+ ++TW +LE+LYQAV +LC +K+ NLY+++ + CE
Sbjct: 34 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICE 93
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
+HI A I S D V+FL ++RCWQ+ C QM+MIR I L+LDRTYV Q + S+W
Sbjct: 94 DHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIW 153
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
DMGL+LFR ++ S +V++KT+ G+L +IERER GEA+DR+LL LL M + L IY +SF
Sbjct: 154 DMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSF 213
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
E+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K LIAT E
Sbjct: 214 EQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVE 273
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+ G I
Sbjct: 274 KQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI 333
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
V++ EKDK MV LL+FK +D I + F KNE F N +K+AFE IN R N+PAELIAK
Sbjct: 334 VINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPNKPAELIAK 393
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
++D KLRAGNK ++EELE LDK++++FRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 394 YVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDA 453
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTT 575
EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q + +P IE++V++LT
Sbjct: 454 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN-VPGNIELTVNILTM 512
Query: 576 GYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELA 635
GYWPTY PM+V LP E+ Q+IFK FYL K+SGR+L WQ++LGHCVLKAEF +GKKEL
Sbjct: 513 GYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQ 572
Query: 636 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVED 695
VSLFQT+VL++FN+ ++ S ++IK ATGIED ELRRTLQSLACGK RVL K PKG+D+ED
Sbjct: 573 VSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIED 632
Query: 696 DDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVL 755
D F+ N+ F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK L
Sbjct: 633 GDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTL 692
Query: 756 SHTLLITELFQQVLPPV 772
SH LL++E++ Q+ PV
Sbjct: 693 SHNLLVSEVYNQLKFPV 709
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 310 bits (793), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 229/352 (65%), Gaps = 1/352 (0%)
Query: 97 PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
P LP N+ ++TW +LE+LYQAV +LC +K+ NLY+++ + CE
Sbjct: 3 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICE 62
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
+HI A I S D V+FL ++RCWQ+ C QM+MIR I L+LDRTYV Q + S+W
Sbjct: 63 DHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIW 122
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
DMGL+LFR ++ S +V++KT+ G+L +IERER GEA+DR+LL LL M + L IY +SF
Sbjct: 123 DMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSF 182
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
E+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K LIAT E
Sbjct: 183 EQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVE 242
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+ G I
Sbjct: 243 KQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI 302
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQN 447
V++ EKDK M L +FK +D I + F KNE F N +K+AFE IN R N
Sbjct: 303 VINPEKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPN 354
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 212/667 (31%), Positives = 339/667 (50%), Gaps = 53/667 (7%)
Query: 143 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLV--VFLSLVERCWQDLCDQMLMIRGIALY 200
+G LY+R++ E + + +L+ DL+ L + W+D ++ GI Y
Sbjct: 84 VGLELYKRLK----EFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAY 139
Query: 201 LDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255
L+R +V++ + ++ + L +R L + + + +L++IE+ER GE ++
Sbjct: 140 LNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETIN 197
Query: 256 RTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDV 301
L++ +++ + LG +Y ESFE FL T FY E +++QQ+ V
Sbjct: 198 TRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPV 257
Query: 302 PDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRT 361
+Y+K E RL EE R +YL ST+ L E+ L+E+H+ I F L+D +
Sbjct: 258 TEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKN 316
Query: 362 EDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEK-------DKDM-VSSLLEF 412
EDL RMY+L SR+ + L L++ L +I G + EK D M V ++L+
Sbjct: 317 EDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAI---EKCGEAALNDPKMYVQTVLDV 373
Query: 413 KASLDTIWEQSFSKNEAFCNTIKDAFEYLIN--------LRQNRPAELIAKFLDEKLRAG 464
+ + +F+ + F + A IN ++ EL+A++ D L+
Sbjct: 374 HKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKS 433
Query: 465 NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLK 524
+K E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+ SAS DAE SMISKLK
Sbjct: 434 SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLK 493
Query: 525 TECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM 584
CG ++T+KL+ MF+DI +SK++NE FK+ P ++ S+ VL++G WP
Sbjct: 494 QACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDLDFSIQVLSSGSWPFQQSC 551
Query: 585 DVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVL 644
LP EL F FY S++SGR+L W L L K + L S FQ +L
Sbjct: 552 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAIL 611
Query: 645 MLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVF 701
+ +N + Q + D+T I+ L + LQ L K+ VL+ D ++ D
Sbjct: 612 LQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKL 671
Query: 702 NEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLI 761
G+ R+ +N E +E +T + + +DR+ + AAIVRIMK RKVL H L+
Sbjct: 672 YLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLL 731
Query: 762 TELFQQV 768
E+ Q+
Sbjct: 732 GEVLTQL 738
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 212/667 (31%), Positives = 339/667 (50%), Gaps = 53/667 (7%)
Query: 143 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLV--VFLSLVERCWQDLCDQMLMIRGIALY 200
+G LY+R++ E + + +L+ DL+ L + W+D ++ GI Y
Sbjct: 68 VGLELYKRLK----EFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAY 123
Query: 201 LDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255
L+R +V++ + ++ + L +R L + + + +L++IE+ER GE ++
Sbjct: 124 LNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETIN 181
Query: 256 RTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDV 301
L++ +++ + LG +Y ESFE FL T FY E +++QQ+ V
Sbjct: 182 TRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPV 241
Query: 302 PDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRT 361
+Y+K E RL EE R +YL ST+ L E+ L+E+H+ I F L+D +
Sbjct: 242 TEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKN 300
Query: 362 EDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEK-------DKDM-VSSLLEF 412
EDL RMY+L SR+ + L L++ L +I G + EK D M V ++L+
Sbjct: 301 EDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAI---EKCGEAALNDPKMYVQTVLDV 357
Query: 413 KASLDTIWEQSFSKNEAFCNTIKDAFEYLIN--------LRQNRPAELIAKFLDEKLRAG 464
+ + +F+ + F + A IN ++ EL+A++ D L+
Sbjct: 358 HKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKS 417
Query: 465 NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLK 524
+K E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+ SAS DAE SMISKLK
Sbjct: 418 SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLK 477
Query: 525 TECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPM 584
CG ++T+KL+ MF+DI +SK++NE FK+ P ++ S+ VL++G WP
Sbjct: 478 QACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDLDFSIQVLSSGSWPFQQSC 535
Query: 585 DVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVL 644
LP EL F FY S++SGR+L W L L K + L S FQ +L
Sbjct: 536 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAIL 595
Query: 645 MLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVF 701
+ +N + Q + D+T I+ L + LQ L K+ VL+ D ++ D
Sbjct: 596 LQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKL 655
Query: 702 NEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLI 761
G+ R+ +N E +E +T + + +DR+ + AAIVRIMK RKVL H L+
Sbjct: 656 YLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLL 715
Query: 762 TELFQQV 768
E+ Q+
Sbjct: 716 GEVLTQL 722
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 5/325 (1%)
Query: 447 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 506
++ EL+A++ D L+ +K E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+
Sbjct: 6 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLV 65
Query: 507 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 566
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 66 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 123
Query: 567 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 626
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 124 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 183
Query: 627 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 686
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 184 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLED 243
Query: 687 LPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA 743
D ++ D G+ R+ +N E +E +T + + +DR+ + A
Sbjct: 244 ENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQA 303
Query: 744 AIVRIMKTRKVLSHTLLITELFQQV 768
AIVRIMK RKVL H L+ E+ Q+
Sbjct: 304 AIVRIMKMRKVLKHQQLLGEVLTQL 328
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 189/367 (51%), Gaps = 14/367 (3%)
Query: 98 TLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEE 157
T+ + W + E+LY+ + LHK G LY + + E
Sbjct: 24 TMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTE 83
Query: 158 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWD 217
H+ +R V S + FL + + W D M+MIR I +Y+DR YV+Q NV ++++
Sbjct: 84 HLINKVREDVLNSLN-NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYN 141
Query: 218 MGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IY 272
+GL +FR + Y + LL MI RER GE VDR + + +M LG +Y
Sbjct: 142 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVY 201
Query: 273 SESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLI 332
E FE PFLE ++EF+ E K++ ++ Y+K VE R++EE ER + LD ST +P++
Sbjct: 202 EEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIV 261
Query: 333 ATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYI 388
ER+L+ +H+ I+ + G ++ +TEDL MY LFSRV N L+++ + ++ Y+
Sbjct: 262 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYL 321
Query: 389 RRTGHGIVMDEEKDKDMV---SSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445
R G +V +E + K+ V L + K+ D +SF+ + F TI FEY +NL
Sbjct: 322 REQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 381
Query: 446 QNRPAEL 452
P L
Sbjct: 382 SRSPEYL 388
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 189/367 (51%), Gaps = 14/367 (3%)
Query: 98 TLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEE 157
T+ + W + E+LY+ + LHK G LY + + E
Sbjct: 2 TMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTE 61
Query: 158 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWD 217
H+ +R V S + FL + + W D M+MIR I +Y+DR YV+Q NV ++++
Sbjct: 62 HLINKVREDVLNSLN-NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN-NVENVYN 119
Query: 218 MGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IY 272
+GL +FR + Y + LL MI RER GE VDR + + +M LG +Y
Sbjct: 120 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVY 179
Query: 273 SESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLI 332
E FE PFLE ++EF+ E K++ ++ Y+K VE R++EE ER + LD ST +P++
Sbjct: 180 EEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIV 239
Query: 333 ATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYI 388
ER+L+ +H+ I+ + G ++ +TEDL MY LFSRV N L+++ + ++ Y+
Sbjct: 240 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYL 299
Query: 389 RRTGHGIVMDEEKDKDMV---SSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445
R G +V +E + K+ V L + K+ D +SF+ + F TI FEY +NL
Sbjct: 300 REQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 359
Query: 446 QNRPAEL 452
P L
Sbjct: 360 SRSPEYL 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 5/325 (1%)
Query: 447 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 506
++ E +A++ D L+ +K E ELE TL++V+ F+ I+ KDVF+ FY K LAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 507 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 566
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 125
Query: 567 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 626
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 126 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 185
Query: 627 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 686
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 186 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLED 245
Query: 687 LPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA 743
D ++ D G+ R+ +N E +E +T + + +DR+ + A
Sbjct: 246 ENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQA 305
Query: 744 AIVRIMKTRKVLSHTLLITELFQQV 768
AIVRIMK RKVL H L+ E+ Q+
Sbjct: 306 AIVRIMKMRKVLKHQQLLGEVLTQL 330
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 170/333 (51%), Gaps = 14/333 (4%)
Query: 124 TSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERC 183
+ E+LY+ LHK G LY + + EH+ +R V S + FL + +
Sbjct: 33 SGLSFEELYRNAYTXVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLN-NNFLQTLNQA 91
Query: 184 WQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLR 243
W D + IR I Y DR YV+Q NV +++++GL +FR + Y + LL
Sbjct: 92 WNDHQTAXVXIRDILXYXDRVYVQQN-NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 150
Query: 244 MIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLECTSEFYAAEGMKYMQQ 298
I RER GE VDR + + + LG +Y E FE PFLE ++EF+ E K++ +
Sbjct: 151 XIARERKGEVVDRGAIRNACQXLXILGLEGRSVYEEDFEAPFLEXSAEFFQXESQKFLAE 210
Query: 299 SDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAIL---DKGFTML 355
+ Y+K VE R++EE ER LD ST +P++ ER+L+ +H I+ + G
Sbjct: 211 NSASVYIKKVEARINEEIERVXHCLDKSTEEPIVKVVERELISKHXKTIVEXENSGLVHX 270
Query: 356 MDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVS---SLLE 411
+ +TEDL Y LFSRV N L++ + + Y+R G +V +E + K+ V L +
Sbjct: 271 LKNGKTEDLGCXYKLFSRVPNGLKTXCECXSSYLREQGKALVSEEGEGKNPVDYRQGLDD 330
Query: 412 FKASLDTIWEQSFSKNEAFCNTIKDAFEYLINL 444
K+ D +SF+ + F TI FEY +NL
Sbjct: 331 LKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL 363
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 2/239 (0%)
Query: 447 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 506
++ E +A++ D L+ +K E ELE TL++V+ F+ I+ KDVF+ FY K LAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 507 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 566
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 125
Query: 567 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 626
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 126 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 185
Query: 627 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 685
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 186 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLE 244
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 184/339 (54%), Gaps = 24/339 (7%)
Query: 449 PAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 506
P EL A + D LR +K + EE+E L +VL +++Q KDVF ++K L +RL+
Sbjct: 7 PEEL-ANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLI 65
Query: 507 LGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQ-SSQARTKLP 563
L SA + E++M+ L+ E G + + NKL MF+DI++S+++N++FK+ + LP
Sbjct: 66 LDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALP 124
Query: 564 SGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 622
+ +++ +L G W + + V LP EL +EFY +SGR+L W + + + +
Sbjct: 125 AD-SVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGI 183
Query: 623 LKAEFPKGKKELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACG- 679
+ + G+ +L V+ FQ VL +N +K+SF+++K AT + D ELRRTL SL
Sbjct: 184 ITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFP 243
Query: 680 --KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAI-QMKETVEE-NT 727
K +VL P+ +D + F N+ F+ R K+N I +++ T E
Sbjct: 244 KLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMRE 303
Query: 728 STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQ 766
E + Q R + AI++IMK RK +S+ L TEL +
Sbjct: 304 EENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVE 342
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 178/339 (52%), Gaps = 24/339 (7%)
Query: 449 PAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 506
P EL A + D LR +K + EE+E L +VL +++Q KDVF ++K L +RL+
Sbjct: 7 PEEL-ANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRRLI 65
Query: 507 LGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQ-ARTKLP 563
L SA + E++ + L+ E G + + NKL F+DI++S+++N++FK+ + + LP
Sbjct: 66 LDISADSEIEENXVEWLR-EVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLALP 124
Query: 564 SGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 622
+ +++ +L G W + + V LP EL +EFY +SGR+L W + + +
Sbjct: 125 AD-SVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNGI 183
Query: 623 LKAEFPKGKKELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACG- 679
+ + G+ +L V+ FQ VL +N +K+SF+++K AT + D ELRRTL SL
Sbjct: 184 ITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFP 243
Query: 680 --KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAIQMKE--TVEENT 727
K +VL P+ +D + F N+ F+ R K+N I + T
Sbjct: 244 KLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERXRE 303
Query: 728 STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQ 766
E + Q R + AI++I K RK +S+ L TEL +
Sbjct: 304 EENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVE 342
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 156/328 (47%), Gaps = 34/328 (10%)
Query: 143 MGGNLYQRIEKECEEHISAAIRSLVGQSPDLV--VFLSLVERCWQDLCDQMLMIRGIALY 200
+G LY+R++ E + + +L+ DL+ L + W+D ++ GI Y
Sbjct: 70 VGLELYKRLK----EFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAY 125
Query: 201 LDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255
L+R +V++ + ++ + L +R L + + + +L++IE+ER GE ++
Sbjct: 126 LNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETIN 183
Query: 256 RTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDV 301
L++ +++ + LG +Y ESFE FL T FY E +++QQ+ V
Sbjct: 184 TRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPV 243
Query: 302 PDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRT 361
+Y+K E RL EE R +YL ST+ L E+ L+E+H+ I F L+D +
Sbjct: 244 TEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKN 302
Query: 362 EDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIV--MDEEKDKD---MVSSLLEFKAS 415
EDL RMY+L SR+ + L L++ L +I G + E D V ++L+
Sbjct: 303 EDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKK 362
Query: 416 LDTIWEQSFSKNEAFCNTIKDAFEYLIN 443
+ + +F+ + F + A IN
Sbjct: 363 YNALVMSAFNNDAGFVAALDKACGRFIN 390
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 715 NAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQVLPPVLQ 774
+ IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK LSH LL++E++ Q+ PV
Sbjct: 6 SGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP 65
Query: 775 FEL 777
+L
Sbjct: 66 ADL 68
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 158/343 (46%), Gaps = 37/343 (10%)
Query: 131 LYQAVNDLCL--HKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLC 188
L+ V+ +CL K ++Q ++++ E I A ++ D + + + W+
Sbjct: 43 LFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVE-WRKFF 101
Query: 189 DQMLMIRGIALYLDRTYV-KQTPNVRSLWDMGLQLFRKYL------SSYSEVEHKTVTGL 241
Q ++ L+ T + KQ+ N +S +M + RK + S +S ++++
Sbjct: 102 TQCDILPKPFCQLEVTLLGKQSSNKKS--NMEDSIVRKLMLDTWNESIFSNIKNRLQDSA 159
Query: 242 LRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGM 293
++++ ERLGEA D L+ + + + L IY ++FEK +L+ T FY +
Sbjct: 160 MKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAP 219
Query: 294 KYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILD 349
Y+QQ+ V +Y+K+ + +L EE +R L YL+ ++ + L+ L+ IL
Sbjct: 220 SYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA 279
Query: 350 KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG--------HGIVMDEE 400
+ M+ + TE L M+SL +V N +E + + L +I G I D E
Sbjct: 280 ECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSE 338
Query: 401 KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 443
K ++ + +L + +++F + F A++ ++N
Sbjct: 339 KYREQLDTLFN---RFSKLVKEAFQDDPRFLTARDKAYKAVVN 378
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 716 AIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQV 768
A + E+ E T ++V DR+++++AAIVRIMK+RK + H +L+ E+ QQ+
Sbjct: 2 AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 54
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 735 QDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQV 768
+DR+ + AAIVRIMK RKVL H L+ E+ Q+
Sbjct: 6 EDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQL 39
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 736 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQ 767
+RQ ++A IVRIMK ++ L HT L+ E Q
Sbjct: 7 ERQIFLEACIVRIMKAKRNLPHTTLVNECIAQ 38
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 736 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQ 767
+RQ ++A IVRIMK ++ L HT L+ E Q
Sbjct: 19 ERQIFLEACIVRIMKAKRNLPHTTLVNECIAQ 50
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 666 DKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRI----------KVN 715
D + T Q+LA ++ Q + KGR + D FN+ F I K+N
Sbjct: 67 DGAIEVTKQNLAKFNIKNCQII-KGRAEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKIN 125
Query: 716 AIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLS-HTLL 760
I V EN + F+ R Y VDA V I +K+ S H L
Sbjct: 126 HIVANTIVLENAAKIINEFESRGYNVDAVNVFISYAKKIPSGHXFL 171
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 528 GSQFTNKLEGMFKDIELS-KEINESFKQSSQARTKLPSGI-EMSVHVLTTGYWPTYPPMD 585
G+Q + G + +E++ +E++E+ K + R+KL SG+ + H++T P++
Sbjct: 237 GTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIIT--------PLE 288
Query: 586 VRLPHELNV 594
+ LP+ L+V
Sbjct: 289 ISLPNTLSV 297
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 527 CGSQFTNKLEGMFKDIELS-KEINESFKQSSQARTKLPSGI-EMSVHVLTTGYWPTYPPM 584
G+Q + G + E++ +E++E+ K + R+KL SG+ + H++T P+
Sbjct: 236 SGTQNVPGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNLGAHIIT--------PL 287
Query: 585 DVRLPHELNV 594
++ LP+ L+V
Sbjct: 288 EISLPNTLSV 297
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 451 ELIAKFLDEKLRAGNK--GTSEEELEGTLDKVLVLF-----RFIQGK-----DVFEAFYK 498
E A+F+D + G K T E++E +DK+LV F + + G+ D +F K
Sbjct: 58 EKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDK 117
Query: 499 KDLAKRLL----LGKSASIDAEKSMISKLKTECGSQFTNKLE 536
K K+ L L K A + E+ +I T G Q +LE
Sbjct: 118 KATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELE 159
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 145 GNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRT 204
G L++ ++ + I AA + LVG S ++ RCW+ L + ++ G + D
Sbjct: 211 GVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM-GQMVDADTA 269
Query: 205 YVKQTPNVRSLWDMGLQLFRKYLSSYSEVE 234
Y+ R L +G++L + + SS E
Sbjct: 270 YITS----RGLRTLGVRLRQHHESSLKVAE 295
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 145 GNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRT 204
G L++ ++ + I AA + LVG S ++ RCW+ L + ++ G + D
Sbjct: 191 GVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM-GQMVDADTA 249
Query: 205 YVKQTPNVRSLWDMGLQLFRKYLSSYSEVE 234
Y+ R L +G++L + + SS E
Sbjct: 250 YITS----RGLRTLGVRLRQHHESSLKVAE 275
>pdb|3CL6|A Chain A, Crystal Structure Of Puue Allantoinase
pdb|3CL6|B Chain B, Crystal Structure Of Puue Allantoinase
pdb|3CL7|A Chain A, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL7|B Chain B, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL8|A Chain A, Crystal Structure Of Puue Allantoinase Complexed With Aca
pdb|3CL8|B Chain B, Crystal Structure Of Puue Allantoinase Complexed With Aca
Length = 308
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 36/148 (24%)
Query: 330 PLIATAERQLLERH---ISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLR----- 381
PL A +RH I A++ G + G+R D Q M R + LE++R
Sbjct: 96 PLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTEL 155
Query: 382 ---QALAMYIRRTGHG---IVMDE-----------------EKDKDMVSSLLEFKASLDT 418
+ L Y RTG +VM+E E + L +LDT
Sbjct: 156 TGERPLGWYTGRTGPNTRRLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDT 215
Query: 419 -----IWEQSFSKNEAFCNTIKDAFEYL 441
Q F+K + F +KDAF+ L
Sbjct: 216 NDMRFTQVQGFNKGDDFFEYLKDAFDVL 243
>pdb|4HHH|S Chain S, Structure Of Pisum Sativum Rubisco
pdb|4HHH|T Chain T, Structure Of Pisum Sativum Rubisco
pdb|4HHH|U Chain U, Structure Of Pisum Sativum Rubisco
pdb|4HHH|V Chain V, Structure Of Pisum Sativum Rubisco
Length = 123
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 771 PVLQFEL---FIYLKHNKISHIQSQSYWTM 797
P L+FEL F+Y +HNK YWTM
Sbjct: 40 PCLEFELKKGFVYREHNKSPGYYDGRYWTM 69
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 145 GNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRT 204
G L++ ++ + I AA LVG S ++ RCW+ L + ++ G + D
Sbjct: 191 GVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCWEQLRENAYLM-GQMVDADTA 249
Query: 205 YVKQTPNVRSLWDMGLQLFRKYLSSYSEVE 234
Y+ R L +G++L + + SS E
Sbjct: 250 YITS----RGLRTLGVRLRQHHESSLKVAE 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,894,589
Number of Sequences: 62578
Number of extensions: 810108
Number of successful extensions: 2036
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1955
Number of HSP's gapped (non-prelim): 40
length of query: 805
length of database: 14,973,337
effective HSP length: 107
effective length of query: 698
effective length of database: 8,277,491
effective search space: 5777688718
effective search space used: 5777688718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)