Query 003648
Match_columns 805
No_of_seqs 235 out of 1018
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:42:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003648.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1699-1702//hhsearch_pdb/003648hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1267.6 72.3 711 85-801 40-751 (759)
2 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1175.4 62.5 684 104-801 1-752 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 647.6 33.9 350 446-801 3-374 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 605.5 39.5 372 85-462 13-397 (410)
5 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 571.1 39.7 351 96-446 2-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 552.7 31.3 347 96-445 5-364 (364)
7 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 523.2 27.5 341 102-446 13-381 (391)
8 2do7_A Cullin-4B, CUL-4B; heli 1.0 1 1 169.4 4.8 85 711-800 2-86 (101)
9 1iuy_A Cullin-3 homologue; win 1.0 1 1 155.3 2.0 78 719-801 5-84 (92)
10 3o2p_E Cell division control p 1.0 1 1 152.6 5.6 75 723-802 6-82 (88)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1267.61 Aligned_cols=711 Identities=57% Similarity=0.912 Sum_probs=685.6
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96215505999999998418988999999999998329997748999999986332694369999999999999999997
Q 003648 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIR 164 (805)
Q Consensus 85 ~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~~~LY~~L~~~i~~~l~~~~~ 164 (805)
++|++|||||+.|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||++|++.|++|+...+.
T Consensus 40 ~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~ 119 (759)
T 2hye_C 40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQIL 119 (759)
T ss_dssp -CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66543158887889996218889999999999998379988879999999999994377999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 55318994899999999999999999999999998843557612787554889999999998424600289999999999
Q 003648 165 SLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRM 244 (805)
Q Consensus 165 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~v~~~~~i~~~l~~~ll~l 244 (805)
.+.....+++.||+.|..+|.+|+.+|.+|++||+||||+|+.++++.++||++|+.+||++|+..+.+.++++++++++
T Consensus 120 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l 199 (759)
T 2hye_C 120 PFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL 199 (759)
T ss_dssp HHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 98755688799999999999999999999999998737087627999886999999999999715776899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99881599589698999999974210546630686999979999999999985189235899999999999998521059
Q 003648 245 IERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 324 (805)
Q Consensus 245 I~~eR~g~~id~~llk~ii~ml~~L~~Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yL~ 324 (805)
|+++|.|+.+|+.+++++++||++|++|.+.||++||++|.+||+.++++|+++.++++|+.+|+.+|++|.+||..||+
T Consensus 200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~ 279 (759)
T 2hye_C 200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279 (759)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99986689774899999999830152778998999999999999999999988499999999999999999999998538
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 47479999999999899999999998899732259978899999974113-21699999999999985222103821127
Q 003648 325 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDK 403 (805)
Q Consensus 325 ~~t~~~l~~~~~~~Li~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~~~~l~~~~~~yi~~~g~~iv~~~~~~~ 403 (805)
++|.++|.++|+++||.+|.+.|+++|+..||++++.++|++||+|++|+ ++++.|+.+|++||++.|.+++.+.+++.
T Consensus 280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~ 359 (759)
T 2hye_C 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDK 359 (759)
T ss_dssp TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 63699999999999899999999996499998238799999999987527363899999999999997087753720278
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEE
Q ss_conf 89999999999798999984069887578898688987406899726899999999974399999967898300021034
Q 003648 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVL 483 (805)
Q Consensus 404 ~~V~~ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~~k~~e~La~y~D~~Lk~~~k~~~~~e~e~~l~~i~~l 483 (805)
+||+.|++++++++.++.+||++|+.|.+++++||+.|+|.+.++++|+||+|||.+||+|.|+.+++|++..+++++.|
T Consensus 360 ~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~l 439 (759)
T 2hye_C 360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMIL 439 (759)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999986689889999999999999778997308999999999853678889888999999876446
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 66403668999999999998981799999799999999999981871379799999989998999999999764204999
Q 003648 484 FRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 563 (805)
Q Consensus 484 f~~l~~KD~Fe~~Y~k~LakRLL~~~s~s~d~E~~~i~~Lk~ecG~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~ 563 (805)
|+|+++||+|+.+|+++||+|||.++|++.|+|+.||++||.+||.+||+||++||+|+..|++++..|++++.+ .+.+
T Consensus 440 f~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~ 518 (759)
T 2hye_C 440 FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDS 518 (759)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 530187999999999999998477999985999999999998847588999999998799989999999999853-4677
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHH
Q ss_conf 99527898851488899999886687678999999999997028972138615875489999965951899874899999
Q 003648 564 SGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVV 643 (805)
Q Consensus 564 ~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~i~~~f~~~~~el~vs~~Q~~I 643 (805)
.+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+||+|+|++++|+|+|+++|++|+++++||++||+|
T Consensus 519 ~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i 598 (759)
T 2hye_C 519 GPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV 598 (759)
T ss_dssp CCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCEEEEEECHHHHHH
T ss_conf 77744798847999999998888698999999999999998607997887015667589999967934999972999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCH
Q ss_conf 99660899877989999829999999999768311884104408999988999948980599998202884344443100
Q 003648 644 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETV 723 (805)
Q Consensus 644 LLlFN~~~~ls~~eI~~~t~i~~~~l~~~L~sL~~~k~~iL~k~~~~~~i~~~d~f~~N~~F~~~~~kiki~~i~~ket~ 723 (805)
||+||+.+.+|+++|++.||+++++|+++|++|+|+|.+||.++|+|+++.++|+|.+|.+|++++.||+|++++.+++.
T Consensus 599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCC
T ss_conf 99855899837999999979099999999999980577635117888879999989962256687647875662455541
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 112243586886259888899998621477789677999999823998770358776666677887731012466667
Q 003648 724 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQVLPPVLQFELFIYLKHNKISHIQSQSYWTMPQIT 801 (805)
Q Consensus 724 ~e~~~~~e~v~~dR~~~I~AaIVRIMK~rK~l~h~~Li~ev~~ql~F~~~~~~i~~~~~k~~Ie~Li~~eyi~~~~~~ 801 (805)
+|++.++++|.+||++.||||||||||+||+|+|++|+.||++|++|+|++.+| |++||.||+||||+||...
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~I-----Kk~Ie~LIereYleR~~~~ 751 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDL-----KKRIESLIDRDYMERDKDN 751 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHH-----HHHHHHHHHTTSCBCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHCCCCEECCCCC
T ss_conf 233426877888899999999799984057777999999999980789998999-----9999987415656517999
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1175.42 Aligned_cols=684 Identities=31% Similarity=0.521 Sum_probs=646.9
Q ss_pred HHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHCCC---------------------------CHHHHHHHHHHHH
Q ss_conf 898899999999999832-999774899999998633269---------------------------4369999999999
Q 003648 104 EEDTWAKLKLAIKAIFLK-QPTSCDLEKLYQAVNDLCLHK---------------------------MGGNLYQRIEKEC 155 (805)
Q Consensus 104 ~e~~W~~L~~aI~~I~~~-~~~~~s~e~LY~~Vy~lC~~k---------------------------~~~~LY~~L~~~i 155 (805)
++++|..|++||++|+.+ ..+..+||+||++||++|+++ +|++||+++++.+
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 95059999999999986699987899999999999966875467876543221223555345674111899999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999975531899489999999999999999999999999884355761278-----75548899999999984246
Q 003648 156 EEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWDMGLQLFRKYLSSY 230 (805)
Q Consensus 156 ~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~-----~~~sI~~lgl~lFr~~v~~~ 230 (805)
++|+...+.++.... + +.||+.|..+|.+|+.++.+|+++|+||||+||.+.+ ++++||++|+.+||++||.
T Consensus 81 ~~~l~~~~~~~~~~~-~-e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~- 157 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLM-D-ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR- 157 (760)
T ss_dssp HHHHHHHHHTTCSCT-T-TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT-
T ss_pred HHHHHHHHHHHHHCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-
T ss_conf 999999999875147-5-8999999999999999999988999886789873355346887661999999999999999-
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002899999999999988159958969899999997421--------------054663068699997999999999998
Q 003648 231 SEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------------GIYSESFEKPFLECTSEFYAAEGMKYM 296 (805)
Q Consensus 231 ~~i~~~l~~~ll~lI~~eR~g~~id~~llk~ii~ml~~L--------------~~Y~~~FE~~fL~~t~~yY~~~~~~~i 296 (805)
.+.++++++++.+|+++|+|+.||+.+|+++++||++| ++|.+.||++||++|.+||+.++++|+
T Consensus 158 -~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l 236 (760)
T 1ldj_A 158 -PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFL 236 (760)
T ss_dssp -TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999868998778999999999998376644321234442443898899999999999999999998
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-C
Q ss_conf 518923589999999999999852105947479999999999899999999998899732259978899999974113-2
Q 003648 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-N 375 (805)
Q Consensus 297 ~~~~~~eYL~~ve~~l~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~ 375 (805)
++.++++||.+|+.+|++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||++++.++|++||+||+|+ +
T Consensus 237 ~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~-~~~~~ll~~~~~~dL~~my~L~~rv~~ 315 (760)
T 1ldj_A 237 QQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH-TEFQNLLDADKNEDLGRMYNLVSRIQD 315 (760)
T ss_dssp HHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH-HHHHHHHHSCCTTHHHHHHHHHHHSTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 7098999999999999999999998568736999999999999999999999-989999973888899999998674754
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-----
Q ss_conf 169999999999998522210382-----1127899999999997989999840698875788986889874068-----
Q 003648 376 ALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR----- 445 (805)
Q Consensus 376 ~~~~l~~~~~~yi~~~g~~iv~~~-----~~~~~~V~~ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~----- 445 (805)
|++.|+..|++||+..|.+++.+. ..+..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 316 gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~ 395 (760)
T 1ldj_A 316 GLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKM 395 (760)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 38999999999999987999987630334577999999999999999999997678689999999999998568854344
Q ss_pred ---CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ---99726899999999974399999967898300021034664036689999999999989817999997999999999
Q 003648 446 ---QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISK 522 (805)
Q Consensus 446 ---~~k~~e~La~y~D~~Lk~~~k~~~~~e~e~~l~~i~~lf~~l~~KD~Fe~~Y~k~LakRLL~~~s~s~d~E~~~i~~ 522 (805)
.+++||+||+|||.+||+|.|+.+++|++..+++++.||+|+++||+|+.+|+++||+|||.++|++.|+|+.||++
T Consensus 396 ~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~ 475 (760)
T 1ldj_A 396 AQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 475 (760)
T ss_dssp HTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 44443328999888699871788889788899999999999998088899999999999998457999984999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99981871379799999989998999999999764204999995278988514888999998866876789999999999
Q 003648 523 LKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEF 602 (805)
Q Consensus 523 Lk~ecG~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~f 602 (805)
||.+||.+||+||++||+|+..|++++..|+++..+ +...+++|+|.|||+++||.++..++.+|++|+.+++.|++|
T Consensus 476 Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~f 553 (760)
T 1ldj_A 476 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAF 553 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998858177999999999999999999999998740--457788705886489988999987875899999999999999
Q ss_pred HHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 97028972138615875489999965951899874899999996608998779899998299999999997683118841
Q 003648 603 YLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 682 (805)
Q Consensus 603 Y~~k~~~RkL~W~~~lg~~~i~~~f~~~~~el~vs~~Q~~ILLlFN~~~~ls~~eI~~~t~i~~~~l~~~L~sL~~~k~~ 682 (805)
|..+|+||+|+|+|+||+|+|+++|++++++|+||++||+|||+||+.+.+|+++|++.||+++++|+++|++|+ +.+
T Consensus 554 Y~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~ 631 (760)
T 1ldj_A 554 YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSK 631 (760)
T ss_dssp TTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTT
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCC
T ss_conf 997479976887556561899999889359999759999999984699983799999997909999999999998--789
Q ss_pred EEEECC-----CCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 044089-----999889999489805999982028843444431001122435868862598888999986214777896
Q 003648 683 VLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSH 757 (805)
Q Consensus 683 iL~k~~-----~~~~i~~~d~f~~N~~F~~~~~kiki~~i~~ket~~e~~~~~e~v~~dR~~~I~AaIVRIMK~rK~l~h 757 (805)
||.+.| +|+++.++|.|.+|.+|++++.||+||.+..+++.+|.+.++++|.+||++.||||||||||+||+|+|
T Consensus 632 iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h 711 (760)
T 1ldj_A 632 LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKH 711 (760)
T ss_dssp TEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEH
T ss_pred CCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEHHHHHCCCCCCH
T ss_conf 50227875444567799999899502555774279856731023413555478889997776700001013331477769
Q ss_pred HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 779999998239--98770358776666677887731012466667
Q 003648 758 TLLITELFQQVL--PPVLQFELFIYLKHNKISHIQSQSYWTMPQIT 801 (805)
Q Consensus 758 ~~Li~ev~~ql~--F~~~~~~i~~~~~k~~Ie~Li~~eyi~~~~~~ 801 (805)
++|+.||++|++ |+|++.+| |++||.||+||||+||...
T Consensus 712 ~~Lv~ev~~ql~~rF~p~~~~I-----Kk~Ie~LIereYl~R~~~~ 752 (760)
T 1ldj_A 712 QQLLGEVLTQLSSRFKPRVPVI-----KKCIDILIEKEYLERVDGE 752 (760)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHH-----HHHHHHHHHTTSEEECSSS
T ss_pred HHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHCCCEEECCCC
T ss_conf 9999999999855589998999-----9999998621423317999
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=647.60 Aligned_cols=350 Identities=31% Similarity=0.462 Sum_probs=321.0
Q ss_pred CCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9972689999999997439--99999678983000210346640366899999999999898179999979999999999
Q 003648 446 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKL 523 (805)
Q Consensus 446 ~~k~~e~La~y~D~~Lk~~--~k~~~~~e~e~~l~~i~~lf~~l~~KD~Fe~~Y~k~LakRLL~~~s~s~d~E~~~i~~L 523 (805)
.+++||+||+|||.+||+| .|+.+++|++..|++++.||+|+++||+|+.+|+++||+|||.++|++.|+|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 998187--13797999999899989999999997642049999952789885148889999-988668767899999999
Q 003648 524 KTECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFK 600 (805)
Q Consensus 524 k~ecG~--~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~-~~~~~lP~~l~~~~~~F~ 600 (805)
| +||. +||+||++||+||..|++++..|+++..+......+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99970289721386158754899999659518998748999999966089--9877989999829999999999768311
Q 003648 601 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLAC 678 (805)
Q Consensus 601 ~fY~~k~~~RkL~W~~~lg~~~i~~~f~~~~~el~vs~~Q~~ILLlFN~~--~~ls~~eI~~~t~i~~~~l~~~L~sL~~ 678 (805)
.||..+|+||+|+|+|++|+|+|++.|++|+++|+||++||+|||+||+. +.+|+++|++.||+++++|+++|+||+|
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred -C--CCCEEEECCCC---CCCCCCCEEEEECCCCCC-----CEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -8--84104408999---988999948980599998-----20288434444--31001122435868862598888999
Q 003648 679 -G--KVRVLQKLPKG---RDVEDDDSFVFNEGFTAP-----LYRIKVNAIQM--KETVEENTSTTERVFQDRQYQVDAAI 745 (805)
Q Consensus 679 -~--k~~iL~k~~~~---~~i~~~d~f~~N~~F~~~-----~~kiki~~i~~--ket~~e~~~~~e~v~~dR~~~I~AaI 745 (805)
| |.+||.++|++ +++.++|+|.+|.+|+++ .+|+||+.+.. .++..|.++++++|.+||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 986214777896779999998239--98770358776666677887731012466667
Q 003648 746 VRIMKTRKVLSHTLLITELFQQVL--PPVLQFELFIYLKHNKISHIQSQSYWTMPQIT 801 (805)
Q Consensus 746 VRIMK~rK~l~h~~Li~ev~~ql~--F~~~~~~i~~~~~k~~Ie~Li~~eyi~~~~~~ 801 (805)
|||||+||+|.|++|+.||++|++ |+|++.+| |++||.||+||||+||...
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~I-----Kk~Ie~LIereYleR~~~d 374 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMI-----KEQIEWLIEHKYIRRDESD 374 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHH-----HHHHHHHHHTTSEEEETTE
T ss_pred EHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHHHHHCCCCCC
T ss_conf 3133316756699999999999871589999999-----9999998732033059999
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=605.50 Aligned_cols=372 Identities=34% Similarity=0.608 Sum_probs=352.3
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 96215505999999998418988999999999998329997748999999986332694369999999999999999-99
Q 003648 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISA-AI 163 (805)
Q Consensus 85 ~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~~~LY~~L~~~i~~~l~~-~~ 163 (805)
+||++||||+ |++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+.. +.
T Consensus 13 ~~k~~i~~~~--~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~ 90 (410)
T 4ap2_B 13 DTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVR 90 (410)
T ss_dssp ----CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8715653799--99985579999999999999998468988889999999999996306999999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 75531899489999999999999999999999999884355761278755488999999999842460028999999999
Q 003648 164 RSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLR 243 (805)
Q Consensus 164 ~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~v~~~~~i~~~l~~~ll~ 243 (805)
..+....+ +.||+.+..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++|+.++++.++++++++.
T Consensus 91 ~~l~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~-~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 167 (410)
T 4ap2_B 91 EDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 167 (410)
T ss_dssp HHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT-CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986485--7999999999999999998503799986378870489-98799999999999974226789999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9998815995896989999999742105-----46630686999979999999999985189235899999999999998
Q 003648 244 MIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHER 318 (805)
Q Consensus 244 lI~~eR~g~~id~~llk~ii~ml~~L~~-----Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r 318 (805)
+|+++|.|+.||+.+++++++||++||. |.+.||++||++|.+||+.++++|+++.++++||.+|+.+|++|.+|
T Consensus 168 lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R 247 (410)
T 4ap2_B 168 MIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 247 (410)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99997499987989999999999981986077778998899999999999999999986098999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210594747999999999989999999999---8899732259978899999974113-21699999999999985222
Q 003648 319 CLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHG 394 (805)
Q Consensus 319 ~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~g~~~ll~~~~~~~L~~ly~L~~~~-~~~~~l~~~~~~yi~~~g~~ 394 (805)
|..||+++|.++|.++++++||.+|.+.|+. +||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.+
T Consensus 248 ~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~ 327 (410)
T 4ap2_B 248 VMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKA 327 (410)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855860499999999999999999999871053289998679899999999998651231899999999999999899
Q ss_pred HCCCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 103821---12789999999999798999984069887578898688987406899726899999999974
Q 003648 395 IVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLR 462 (805)
Q Consensus 395 iv~~~~---~~~~~V~~ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~~k~~e~La~y~D~~Lk 462 (805)
++.+.+ .+..||+.||+++++|+.++.+||++|+.|.+++++||+.|||.+. +.||+||+|||..-.
T Consensus 328 iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~spElla~y~D~~~~ 397 (410)
T 4ap2_B 328 LVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHHCCCCCC
T ss_conf 9846003467589999999999999999999848988999999999999875999-998999898168653
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=571.07 Aligned_cols=351 Identities=50% Similarity=0.821 Sum_probs=338.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999841898899999999999832999774899999998633269436999999999999999999755318994899
Q 003648 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVV 175 (805)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~~~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~ 175 (805)
+|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+...+.++.....+++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99998788997999999999999847999999999999999999668689999999999999999999999870366799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999884355761278755488999999999842460028999999999999881599589
Q 003648 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (805)
Q Consensus 176 ~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~v~~~~~i~~~l~~~ll~lI~~eR~g~~id 255 (805)
||+.+..+|.+|+.++.+|+++|+||||+|+.++++.++|+++|+.+||++|+.++++.++++++++.+|+++|.|+.||
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999988999862235671489999799999999999972557789999999999999982899777
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 69899999997421054663068699997999999999998518923589999999999999852105947479999999
Q 003648 256 RTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATA 335 (805)
Q Consensus 256 ~~llk~ii~ml~~L~~Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yL~~~t~~~l~~~~ 335 (805)
+.+|+++++||++|++|.+.||++||++|++||+.++++|+++.++++||.+|+.++++|.+||..||+++|.+++.+++
T Consensus 162 ~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~ 241 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 241 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999988455234799999999999999999999988719899999999999999999999867860489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999899999999998899732259978899999974113-2169999999999998522210382112789999999999
Q 003648 336 ERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKA 414 (805)
Q Consensus 336 ~~~Li~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~~~~l~~~~~~yi~~~g~~iv~~~~~~~~~V~~ll~l~~ 414 (805)
+++||.+|.+.|+++|+..||++++.++|++||+|++|+ +|++.|+.+|++||++.|.+++.+.+++..||+.||++++
T Consensus 242 e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~ 321 (354)
T 4a64_A 242 EKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKD 321 (354)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999879999877878899999999740666289999999999999989988196346799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 79899998406988757889868898740689
Q 003648 415 SLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (805)
Q Consensus 415 ~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~ 446 (805)
+|+.++.+||++|+.|.+++++||+.|||.++
T Consensus 322 k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 322 KVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998869989999999999999828999
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=552.71 Aligned_cols=347 Identities=34% Similarity=0.632 Sum_probs=328.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHH
Q ss_conf 999998418988999999999998329997748999999986332694369999999999999999-9975531899489
Q 003648 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISA-AIRSLVGQSPDLV 174 (805)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~~~LY~~L~~~i~~~l~~-~~~~l~~~~~~~~ 174 (805)
+|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+.. +...+....+ +
T Consensus 5 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~--~ 82 (364)
T 4eoz_B 5 PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLN--N 82 (364)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--S
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--H
T ss_conf 99998555998999999999999854888898999999999999641799999999999999999999999986485--8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999999988435576127875548899999999984246002899999999999988159958
Q 003648 175 VFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAV 254 (805)
Q Consensus 175 ~~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~v~~~~~i~~~l~~~ll~lI~~eR~g~~i 254 (805)
.||+.+..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++|+.++++.++++++++.+|+++|.|+.|
T Consensus 83 ~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~-~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~i 161 (364)
T 4eoz_B 83 NFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVV 161 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT-CCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999998999986268870489-9979999999999998057047899999999999998089987
Q ss_pred CHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 96989999999742105-----4663068699997999999999998518923589999999999999852105947479
Q 003648 255 DRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRK 329 (805)
Q Consensus 255 d~~llk~ii~ml~~L~~-----Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yL~~~t~~ 329 (805)
|+.+++++++||++||. |.+.||++||++|.+||+.++++|+++.++++||.+|+.+|++|.+||..||+++|.+
T Consensus 162 d~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~ 241 (364)
T 4eoz_B 162 DRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEE 241 (364)
T ss_dssp CHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999998198617887898789999999999999999998719899999999999999999998757924288
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCH---HH
Q ss_conf 99999999989999999999---8899732259978899999974113-21699999999999985222103821---12
Q 003648 330 PLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KD 402 (805)
Q Consensus 330 ~l~~~~~~~Li~~~~~~ll~---~g~~~ll~~~~~~~L~~ly~L~~~~-~~~~~l~~~~~~yi~~~g~~iv~~~~---~~ 402 (805)
+|.++++++||.+|.+.|++ +||..||++++.++|++||+|++|+ +|++.|+.+|++||++.|.+++.+.+ .+
T Consensus 242 ~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~ 321 (364)
T 4eoz_B 242 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNP 321 (364)
T ss_dssp HHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999999999986000117998858979999999999841444289999999999999989997370044775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 7899999999997989999840698875788986889874068
Q 003648 403 KDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445 (805)
Q Consensus 403 ~~~V~~ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~ 445 (805)
..||+.||+++++|+.++.+||++|+.|.+++++||+.|||.+
T Consensus 322 ~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 322 VDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999999999980898999999999999960494
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=523.25 Aligned_cols=341 Identities=21% Similarity=0.364 Sum_probs=317.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 4189889999999999983299-977489999999863326--9436999999999999999999755318994899999
Q 003648 102 NFEEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLH--KMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLS 178 (805)
Q Consensus 102 ~~~e~~W~~L~~aI~~I~~~~~-~~~s~e~LY~~Vy~lC~~--k~~~~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~~L~ 178 (805)
.+++++|..|++||++|+.+.+ +..+||+||++||++|++ ++|++||+++++.|++|+..++.++..... ++.||+
T Consensus 13 ~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~-~e~~L~ 91 (391)
T 2wzk_A 13 LQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQD-DTALLK 91 (391)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 5699899999999999986799986789999999999992675244999999999999999999999985167-779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999884355761278-------75548899999999984246002899999999999988159
Q 003648 179 LVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-------NVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLG 251 (805)
Q Consensus 179 ~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~~~-------~~~sI~~lgl~lFr~~v~~~~~i~~~l~~~ll~lI~~eR~g 251 (805)
.|..+|.+|+.++.+|+++|+||||+||.+.+ +.++|+++|+.+||++|+. ++.++++++++.+|+++|.|
T Consensus 92 ~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~G 169 (391)
T 2wzk_A 92 AYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLG 169 (391)
T ss_dssp HHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998999999878987314411235788886999999999999999--99999999999999997489
Q ss_pred CCCCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 958969899999997421--------054663068699997999999999998518923589999999999999852105
Q 003648 252 EAVDRTLLNHLLKMFTAL--------GIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYL 323 (805)
Q Consensus 252 ~~id~~llk~ii~ml~~L--------~~Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yL 323 (805)
+.+|+.+++++++||++| ++|.+.||++||++|.+||+.++++|+++.++++||.+|+.+|++|.+||..||
T Consensus 170 e~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL 249 (391)
T 2wzk_A 170 EAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 249 (391)
T ss_dssp CCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98779999999999999746865557786799899999999999999999999849999999999999999999999873
Q ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9----47479999999999899999999998899732259978899999974113-216999999999999852221038
Q 003648 324 D----VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 398 (805)
Q Consensus 324 ~----~~t~~~l~~~~~~~Li~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~~~~l~~~~~~yi~~~g~~iv~~ 398 (805)
+ ++|.++|.++++++||.+|.+.|++ |+..||++++.+||++||+||+|+ +|++.|+.+|++||++.|.+++.+
T Consensus 250 ~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~-~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~ 328 (391)
T 2wzk_A 250 ETRRECNSVEALMECCVNALVTSFKETILA-ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVA 328 (391)
T ss_dssp CCTTCCSHHHHHHHHHHHHHTGGGHHHHHT-THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 876774359999999999999999999999-8999987587999999999876374528999999999999997999970
Q ss_pred C-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 2-----11278999999999979899998406988757889868898740689
Q 003648 399 E-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (805)
Q Consensus 399 ~-----~~~~~~V~~ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~ 446 (805)
. ..+..||+.||+++++|+.++.+||++|+.|.+++++||+.|||.++
T Consensus 329 ~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 329 AAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 10124478799999999999999999999829988999999999999968766
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=169.36 Aligned_cols=85 Identities=53% Similarity=0.733 Sum_probs=80.9
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 28843444431001122435868862598888999986214777896779999998239987703587766666778877
Q 003648 711 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQVLPPVLQFELFIYLKHNKISHIQ 790 (805)
Q Consensus 711 kiki~~i~~ket~~e~~~~~e~v~~dR~~~I~AaIVRIMK~rK~l~h~~Li~ev~~ql~F~~~~~~i~~~~~k~~Ie~Li 790 (805)
.||||+++.+++.+|.+.+++.|.+||++.||||||||||+||+|+|++|+.||++||+|+|++.+| |++||.||
T Consensus 2 ~~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~I-----Kk~IE~LI 76 (101)
T 2do7_A 2 SSGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADL-----KKRIESLI 76 (101)
T ss_dssp CCSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHH-----HHHHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHH
T ss_conf 6236441135556889999999999999999999999972202055999999999983799998999-----99999986
Q ss_pred HHHCCCCCCC
Q ss_conf 3101246666
Q 003648 791 SQSYWTMPQI 800 (805)
Q Consensus 791 ~~eyi~~~~~ 800 (805)
+||||+||..
T Consensus 77 ereYleR~~~ 86 (101)
T 2do7_A 77 DRDYMERDKE 86 (101)
T ss_dssp HTTSEEECSS
T ss_pred HHHHHHCCCC
T ss_conf 5657744899
No 9
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=1.00 E-value=1 Score=155.26 Aligned_cols=78 Identities=29% Similarity=0.401 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 431001122435868862598888999986214777896779999998239--987703587766666778877310124
Q 003648 719 MKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQVL--PPVLQFELFIYLKHNKISHIQSQSYWT 796 (805)
Q Consensus 719 ~ket~~e~~~~~e~v~~dR~~~I~AaIVRIMK~rK~l~h~~Li~ev~~ql~--F~~~~~~i~~~~~k~~Ie~Li~~eyi~ 796 (805)
.+++.+|++.|++.|.+||++.||||||||||+||+|+|++|+.||++||+ |+|++.+| |++||.||+||||+
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~I-----Kk~IE~LIereYle 79 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVI-----KKRIEGLIEREYLA 79 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHH-----HHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHH-----HHHHHHHHHHHHHH
T ss_conf 3246889999999999987877314554054302305499999999999707789998999-----99999886553662
Q ss_pred CCCCC
Q ss_conf 66667
Q 003648 797 MPQIT 801 (805)
Q Consensus 797 ~~~~~ 801 (805)
||...
T Consensus 80 R~~~d 84 (92)
T 1iuy_A 80 RTPED 84 (92)
T ss_dssp ECSSC
T ss_pred CCCCC
T ss_conf 58999
No 10
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=1.00 E-value=1 Score=152.61 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 01122435868862598888999986214777896779999998239--9877035877666667788773101246666
Q 003648 723 VEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQVL--PPVLQFELFIYLKHNKISHIQSQSYWTMPQI 800 (805)
Q Consensus 723 ~~e~~~~~e~v~~dR~~~I~AaIVRIMK~rK~l~h~~Li~ev~~ql~--F~~~~~~i~~~~~k~~Ie~Li~~eyi~~~~~ 800 (805)
.+|+++|++.|.+||++.||||||||||+||+|+|++|+.||++||+ |+|++.+| |++||.||+||||+||..
T Consensus 6 ~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~I-----Kk~IE~LIekeYleR~~~ 80 (88)
T 3o2p_E 6 LTEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMV-----KRAIDSLIQKGYLQRGDD 80 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHH-----HHHHHHHHHTTSEEECTT
T ss_pred CCHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHHHHHHCCCC
T ss_conf 552888999999976666002342221155514499999999999866589999999-----999999985357742899
Q ss_pred CC
Q ss_conf 78
Q 003648 801 TN 802 (805)
Q Consensus 801 ~~ 802 (805)
.|
T Consensus 81 ~~ 82 (88)
T 3o2p_E 81 GE 82 (88)
T ss_dssp SS
T ss_pred CC
T ss_conf 98
Done!