Query 003649
Match_columns 805
No_of_seqs 360 out of 1538
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-227 5E-232 1960.4 70.6 776 23-803 24-801 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-175 5E-180 1471.4 41.7 631 25-739 16-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.9E-91 4.2E-96 761.2 17.7 297 35-340 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.9E-37 4.1E-42 360.0 16.5 290 29-327 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.7 2E-18 4.4E-23 192.6 8.1 142 50-209 2-161 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 1.5E-12 3.2E-17 141.1 18.9 192 29-261 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.3 1.3E-10 2.9E-15 137.7 24.3 160 27-221 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.2 5.5E-10 1.2E-14 139.1 18.5 257 27-342 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.1 7.5E-10 1.6E-14 137.9 18.5 150 27-221 334-489 (1027)
10 COG3250 LacZ Beta-galactosidas 98.9 1.3E-08 2.8E-13 123.1 15.6 120 27-188 284-409 (808)
11 PF13364 BetaGal_dom4_5: Beta- 98.9 4.9E-09 1.1E-13 98.2 7.4 69 619-712 33-104 (111)
12 PF00150 Cellulase: Cellulase 98.8 4.1E-08 8.9E-13 103.9 13.7 161 39-221 4-172 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 1.2E-07 2.6E-12 88.9 9.8 84 460-550 24-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.3 5.7E-06 1.2E-10 81.8 11.1 100 466-571 63-164 (167)
15 PF03198 Glyco_hydro_72: Gluca 98.1 3.7E-05 8E-10 83.6 14.5 157 23-217 5-179 (314)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.1E-05 2.3E-10 86.1 8.1 116 81-221 3-125 (254)
17 TIGR03356 BGL beta-galactosida 97.7 6.7E-05 1.5E-09 86.0 8.0 97 58-166 54-151 (427)
18 PLN02705 beta-amylase 97.7 0.00011 2.4E-09 85.1 9.3 113 56-182 266-414 (681)
19 PLN02905 beta-amylase 97.7 0.00013 2.7E-09 84.8 9.6 113 56-182 284-432 (702)
20 PLN02801 beta-amylase 97.7 0.00013 2.9E-09 83.3 9.5 81 56-142 35-127 (517)
21 PLN00197 beta-amylase; Provisi 97.7 0.00035 7.6E-09 80.5 12.8 142 56-212 125-319 (573)
22 PLN02161 beta-amylase 97.6 0.0002 4.2E-09 81.9 9.7 81 56-142 115-207 (531)
23 PLN02803 beta-amylase 97.6 0.00024 5.2E-09 81.6 9.6 81 56-142 105-197 (548)
24 PF13204 DUF4038: Protein of u 97.5 0.00032 6.8E-09 76.5 9.3 225 33-287 2-274 (289)
25 PF01373 Glyco_hydro_14: Glyco 97.0 0.00061 1.3E-08 76.6 4.6 112 59-182 17-152 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.0 0.00094 2E-08 73.8 6.1 156 45-222 11-179 (320)
27 PF00232 Glyco_hydro_1: Glycos 96.9 0.00096 2.1E-08 77.2 5.0 97 58-166 58-156 (455)
28 PRK10150 beta-D-glucuronidase; 96.7 0.0075 1.6E-07 72.2 11.1 100 468-573 62-179 (604)
29 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.0032 7E-08 62.2 6.5 66 620-712 67-136 (167)
30 COG3693 XynA Beta-1,4-xylanase 96.7 0.012 2.6E-07 64.4 10.7 133 67-222 55-194 (345)
31 PRK10340 ebgA cryptic beta-D-g 96.5 0.0091 2E-07 75.6 10.1 94 471-573 109-206 (1021)
32 PF07745 Glyco_hydro_53: Glyco 96.5 0.0074 1.6E-07 67.1 8.0 138 61-222 27-178 (332)
33 PRK15014 6-phospho-beta-glucos 96.4 0.0072 1.6E-07 70.4 7.7 95 59-165 70-167 (477)
34 PRK09852 cryptic 6-phospho-bet 96.3 0.0088 1.9E-07 69.7 7.5 96 58-165 71-169 (474)
35 PF14488 DUF4434: Domain of un 96.3 0.065 1.4E-06 54.0 12.6 136 53-218 15-158 (166)
36 COG2730 BglC Endoglucanase [Ca 96.1 0.019 4.1E-07 65.6 9.1 114 56-187 66-192 (407)
37 PRK09525 lacZ beta-D-galactosi 96.1 0.021 4.6E-07 72.3 10.2 95 470-573 119-218 (1027)
38 PLN02998 beta-glucosidase 96.1 0.0051 1.1E-07 72.0 4.4 100 58-165 82-183 (497)
39 TIGR01233 lacG 6-phospho-beta- 96.0 0.03 6.4E-07 65.2 10.2 96 58-165 53-149 (467)
40 PLN02814 beta-glucosidase 96.0 0.0061 1.3E-07 71.4 4.3 100 58-165 77-178 (504)
41 PRK13511 6-phospho-beta-galact 96.0 0.0074 1.6E-07 70.2 4.9 96 58-165 54-150 (469)
42 PRK09593 arb 6-phospho-beta-gl 95.9 0.0096 2.1E-07 69.4 5.4 100 58-165 73-175 (478)
43 PRK09589 celA 6-phospho-beta-g 95.8 0.01 2.2E-07 69.2 5.0 100 58-165 67-169 (476)
44 PLN02849 beta-glucosidase 95.7 0.0097 2.1E-07 69.8 4.5 100 58-165 79-180 (503)
45 PF02140 Gal_Lectin: Galactose 95.5 0.0099 2.1E-07 52.3 2.6 39 764-803 1-43 (80)
46 KOG2230 Predicted beta-mannosi 95.4 0.13 2.8E-06 59.8 11.9 149 34-222 328-494 (867)
47 COG3867 Arabinogalactan endo-1 95.4 0.069 1.5E-06 57.9 9.0 109 60-187 65-182 (403)
48 PF02055 Glyco_hydro_30: O-Gly 94.0 0.38 8.3E-06 56.5 11.6 330 43-403 76-490 (496)
49 COG2723 BglB Beta-glucosidase/ 93.9 0.13 2.9E-06 59.3 7.4 100 58-165 59-161 (460)
50 smart00812 Alpha_L_fucos Alpha 93.9 11 0.00024 43.1 22.5 248 51-350 77-339 (384)
51 PF14871 GHL6: Hypothetical gl 93.7 0.36 7.7E-06 47.0 8.9 98 62-164 4-123 (132)
52 TIGR01515 branching_enzym alph 92.0 1.8 3.9E-05 52.3 13.5 155 62-219 160-347 (613)
53 PRK09936 hypothetical protein; 90.8 0.61 1.3E-05 50.9 7.0 58 53-116 33-91 (296)
54 COG3934 Endo-beta-mannanase [C 90.4 0.23 5E-06 57.0 3.6 157 35-209 3-168 (587)
55 smart00642 Aamy Alpha-amylase 90.3 0.77 1.7E-05 46.2 6.9 68 57-124 18-97 (166)
56 PF02638 DUF187: Glycosyl hydr 90.2 1.2 2.6E-05 49.3 9.1 119 56-184 17-162 (311)
57 PRK14706 glycogen branching en 89.9 4.4 9.5E-05 49.3 14.0 145 64-218 174-355 (639)
58 PRK05402 glycogen branching en 89.7 2.9 6.3E-05 51.6 12.6 54 64-117 272-335 (726)
59 TIGR00542 hxl6Piso_put hexulos 89.3 4.4 9.6E-05 43.5 12.3 131 57-215 15-149 (279)
60 PLN02447 1,4-alpha-glucan-bran 88.4 9.1 0.0002 47.4 15.3 62 57-119 250-322 (758)
61 PF05913 DUF871: Bacterial pro 87.7 1 2.2E-05 50.9 6.2 71 46-122 2-72 (357)
62 PRK13210 putative L-xylulose 5 85.8 5.9 0.00013 42.3 10.7 131 59-215 17-149 (284)
63 PRK14705 glycogen branching en 85.8 11 0.00024 48.9 14.7 56 62-117 770-835 (1224)
64 cd00019 AP2Ec AP endonuclease 85.6 6 0.00013 42.5 10.7 54 58-115 10-64 (279)
65 PRK12568 glycogen branching en 85.0 16 0.00034 45.3 14.8 55 62-119 274-341 (730)
66 PF01261 AP_endonuc_2: Xylose 83.4 1.9 4E-05 43.3 5.2 125 64-215 1-128 (213)
67 PRK09997 hydroxypyruvate isome 81.1 24 0.00052 37.5 12.9 49 50-115 10-58 (258)
68 PF13200 DUF4015: Putative gly 80.4 15 0.00032 41.1 11.2 121 56-215 11-140 (316)
69 PRK01060 endonuclease IV; Prov 80.0 35 0.00076 36.5 13.8 93 60-181 14-109 (281)
70 PF02679 ComA: (2R)-phospho-3- 80.0 2.2 4.9E-05 45.7 4.5 52 57-118 83-134 (244)
71 PF14307 Glyco_tran_WbsX: Glyc 79.7 22 0.00047 40.0 12.5 138 55-222 55-198 (345)
72 TIGR02631 xylA_Arthro xylose i 79.6 28 0.00061 39.8 13.5 138 58-218 32-177 (382)
73 PF00128 Alpha-amylase: Alpha 79.6 1.8 3.9E-05 46.0 3.8 57 61-117 7-72 (316)
74 PRK09989 hypothetical protein; 79.4 18 0.00038 38.5 11.2 42 60-115 17-58 (258)
75 PRK09856 fructoselysine 3-epim 78.8 28 0.00061 37.0 12.6 130 59-215 14-145 (275)
76 PRK09441 cytoplasmic alpha-amy 78.3 3.7 8E-05 48.1 6.1 61 57-117 18-101 (479)
77 TIGR03234 OH-pyruv-isom hydrox 77.5 41 0.00089 35.4 13.3 43 59-115 15-57 (254)
78 PF01229 Glyco_hydro_39: Glyco 76.2 6.6 0.00014 46.1 7.4 66 47-118 28-105 (486)
79 PRK13209 L-xylulose 5-phosphat 76.1 21 0.00045 38.3 10.7 125 59-215 22-154 (283)
80 TIGR02402 trehalose_TreZ malto 75.6 4.7 0.0001 48.1 6.0 54 61-117 114-180 (542)
81 COG1649 Uncharacterized protei 74.6 14 0.0003 42.7 9.1 123 55-187 61-210 (418)
82 PF14683 CBM-like: Polysacchar 74.4 3.2 6.9E-05 42.0 3.6 58 644-712 91-149 (167)
83 COG0296 GlgB 1,4-alpha-glucan 74.2 6.5 0.00014 47.5 6.7 57 56-116 163-233 (628)
84 smart00518 AP2Ec AP endonuclea 73.7 48 0.001 35.3 12.7 101 48-181 3-104 (273)
85 PF13199 Glyco_hydro_66: Glyco 73.3 46 0.001 40.0 13.3 160 56-221 116-308 (559)
86 TIGR01531 glyc_debranch glycog 72.2 13 0.00028 48.6 8.9 115 35-155 104-238 (1464)
87 PF08531 Bac_rhamnosid_N: Alph 71.3 19 0.0004 36.4 8.3 56 494-550 6-68 (172)
88 PRK12313 glycogen branching en 70.9 7.3 0.00016 47.3 6.2 52 63-117 176-240 (633)
89 TIGR03849 arch_ComA phosphosul 70.7 8.3 0.00018 41.2 5.8 53 57-119 70-122 (237)
90 TIGR02403 trehalose_treC alpha 70.7 6.1 0.00013 47.2 5.4 60 56-117 25-95 (543)
91 PRK13398 3-deoxy-7-phosphohept 70.5 16 0.00034 39.8 8.1 75 35-117 20-98 (266)
92 PF11324 DUF3126: Protein of u 69.9 11 0.00025 32.2 5.3 33 500-532 25-59 (63)
93 PLN02960 alpha-amylase 69.7 8.3 0.00018 48.2 6.3 57 61-117 420-486 (897)
94 COG3589 Uncharacterized conser 69.0 14 0.00031 41.2 7.3 72 46-124 4-76 (360)
95 PF03659 Glyco_hydro_71: Glyco 68.8 17 0.00037 41.7 8.2 53 56-117 15-67 (386)
96 PRK09505 malS alpha-amylase; R 68.3 9.1 0.0002 47.0 6.3 58 60-117 232-312 (683)
97 TIGR02104 pulA_typeI pullulana 67.8 9.1 0.0002 46.3 6.1 55 62-117 168-249 (605)
98 PRK10933 trehalose-6-phosphate 67.5 10 0.00022 45.3 6.4 57 58-117 33-101 (551)
99 cd06593 GH31_xylosidase_YicI Y 67.1 14 0.0003 40.6 6.9 68 55-122 21-91 (308)
100 PF01791 DeoC: DeoC/LacD famil 66.7 2 4.3E-05 45.4 0.2 53 61-116 79-131 (236)
101 KOG0496 Beta-galactosidase [Ca 66.0 1.8 3.9E-05 51.8 -0.3 37 766-802 332-368 (649)
102 PRK10785 maltodextrin glucosid 65.9 12 0.00025 45.4 6.5 57 61-117 182-246 (598)
103 KOG0626 Beta-glucosidase, lact 65.5 9.8 0.00021 44.9 5.5 112 59-180 92-207 (524)
104 cd06592 GH31_glucosidase_KIAA1 65.3 54 0.0012 36.1 11.1 69 53-124 25-97 (303)
105 cd04908 ACT_Bt0572_1 N-termina 63.3 24 0.00051 29.5 6.1 55 57-115 12-66 (66)
106 TIGR02456 treS_nterm trehalose 63.0 9.9 0.00021 45.3 5.1 58 56-116 26-95 (539)
107 cd06595 GH31_xylosidase_XylS-l 62.2 86 0.0019 34.4 11.8 71 50-120 14-97 (292)
108 PRK12677 xylose isomerase; Pro 61.9 1.2E+02 0.0025 34.9 13.2 89 59-165 32-124 (384)
109 PF06832 BiPBP_C: Penicillin-B 60.6 13 0.00029 33.1 4.4 49 495-551 35-84 (89)
110 PRK14510 putative bifunctional 58.8 14 0.0003 48.4 5.7 56 62-117 191-267 (1221)
111 PLN02361 alpha-amylase 58.1 21 0.00045 41.2 6.4 57 61-117 32-96 (401)
112 cd06589 GH31 The enzymes of gl 57.9 1.7E+02 0.0038 31.4 13.1 65 56-121 22-90 (265)
113 PF08308 PEGA: PEGA domain; I 57.5 9.7 0.00021 32.3 2.8 39 495-543 3-41 (71)
114 TIGR02100 glgX_debranch glycog 57.3 47 0.001 41.0 9.6 55 63-117 189-265 (688)
115 cd06602 GH31_MGAM_SI_GAA This 55.2 1.2E+02 0.0025 34.2 11.6 74 50-124 13-93 (339)
116 PF02449 Glyco_hydro_42: Beta- 55.0 29 0.00064 39.1 6.9 136 197-343 211-373 (374)
117 TIGR02401 trehalose_TreY malto 55.0 26 0.00055 44.0 6.8 64 56-119 14-87 (825)
118 PRK14582 pgaB outer membrane N 54.5 64 0.0014 39.7 10.0 112 57-186 333-468 (671)
119 cd06565 GH20_GcnA-like Glycosy 52.9 79 0.0017 34.9 9.7 67 56-125 15-88 (301)
120 smart00481 POLIIIAc DNA polyme 52.5 39 0.00085 28.2 5.7 43 60-115 17-59 (67)
121 PF02065 Melibiase: Melibiase; 52.4 1.8E+02 0.0039 33.6 12.7 90 50-139 50-148 (394)
122 COG1306 Uncharacterized conser 52.0 29 0.00064 38.3 5.9 62 56-117 75-144 (400)
123 PF12876 Cellulase-like: Sugar 51.1 28 0.0006 31.1 4.8 47 173-219 7-62 (88)
124 PF14307 Glyco_tran_WbsX: Glyc 51.0 2.4E+02 0.0053 31.6 13.3 43 32-77 150-194 (345)
125 PRK10076 pyruvate formate lyas 50.9 1.6E+02 0.0034 31.0 11.1 126 56-215 52-209 (213)
126 PF08531 Bac_rhamnosid_N: Alph 50.7 19 0.00041 36.4 4.0 53 639-712 7-62 (172)
127 PRK03705 glycogen debranching 50.1 25 0.00054 43.1 5.7 55 63-117 184-262 (658)
128 COG3623 SgaU Putative L-xylulo 49.6 21 0.00044 38.3 4.1 125 57-214 17-150 (287)
129 PRK14507 putative bifunctional 49.4 35 0.00077 45.9 7.1 62 55-119 755-829 (1693)
130 PRK14511 maltooligosyl trehalo 48.5 38 0.00081 42.8 6.8 63 55-120 17-92 (879)
131 TIGR00677 fadh2_euk methylenet 47.6 67 0.0015 35.2 8.0 108 44-165 130-250 (281)
132 PF01261 AP_endonuc_2: Xylose 47.0 1.2E+02 0.0025 30.2 9.2 104 58-189 27-137 (213)
133 PRK08673 3-deoxy-7-phosphohept 46.6 59 0.0013 36.7 7.5 76 35-117 86-164 (335)
134 cd06545 GH18_3CO4_chitinase Th 45.6 90 0.0019 33.2 8.5 75 88-188 36-111 (253)
135 cd06547 GH85_ENGase Endo-beta- 45.1 43 0.00093 37.8 6.2 114 74-218 32-147 (339)
136 cd06591 GH31_xylosidase_XylS X 44.2 49 0.0011 36.7 6.4 66 56-122 22-91 (319)
137 PLN00196 alpha-amylase; Provis 43.9 48 0.001 38.6 6.5 58 61-118 47-113 (428)
138 PLN03059 beta-galactosidase; P 43.4 42 0.00091 42.1 6.1 40 472-518 620-659 (840)
139 PRK09432 metF 5,10-methylenete 42.6 67 0.0015 35.5 7.1 87 63-165 168-265 (296)
140 cd06603 GH31_GANC_GANAB_alpha 42.0 55 0.0012 36.6 6.4 74 50-124 13-91 (339)
141 PF04914 DltD_C: DltD C-termin 41.8 49 0.0011 32.3 5.2 58 97-179 36-94 (130)
142 cd06598 GH31_transferase_CtsZ 41.5 63 0.0014 35.8 6.7 67 56-122 22-95 (317)
143 KOG2024 Beta-Glucuronidase GUS 41.5 36 0.00078 37.0 4.5 51 467-518 84-134 (297)
144 TIGR02102 pullulan_Gpos pullul 41.3 48 0.001 43.0 6.4 21 97-117 555-575 (1111)
145 PF10566 Glyco_hydro_97: Glyco 40.8 87 0.0019 34.4 7.5 116 55-178 29-160 (273)
146 PRK08645 bifunctional homocyst 39.5 95 0.0021 37.8 8.3 110 41-165 461-578 (612)
147 PRK09856 fructoselysine 3-epim 39.5 43 0.00094 35.6 4.9 59 58-120 90-153 (275)
148 TIGR00419 tim triosephosphate 39.3 54 0.0012 34.4 5.4 44 64-117 74-117 (205)
149 COG5520 O-Glycosyl hydrolase [ 37.4 6.1E+02 0.013 29.2 13.2 86 106-212 111-206 (433)
150 KOG1412 Aspartate aminotransfe 37.3 65 0.0014 36.1 5.7 118 57-222 132-250 (410)
151 TIGR02103 pullul_strch alpha-1 37.0 56 0.0012 41.5 6.0 21 97-117 404-424 (898)
152 COG1735 Php Predicted metal-de 36.9 1.2E+02 0.0026 33.9 7.7 154 26-222 15-173 (316)
153 COG0366 AmyA Glycosidases [Car 36.4 43 0.00094 38.6 4.7 56 62-117 33-97 (505)
154 PF08306 Glyco_hydro_98M: Glyc 36.2 40 0.00087 37.6 4.0 59 44-113 104-169 (324)
155 cd06600 GH31_MGAM-like This fa 36.2 76 0.0017 35.2 6.4 72 50-122 13-89 (317)
156 PF02228 Gag_p19: Major core p 35.6 14 0.0003 32.9 0.3 39 56-111 20-58 (92)
157 cd06599 GH31_glycosidase_Aec37 35.2 1E+02 0.0022 34.2 7.1 66 57-122 28-98 (317)
158 TIGR02455 TreS_stutzeri trehal 34.6 88 0.0019 38.3 6.8 76 56-135 76-176 (688)
159 cd06601 GH31_lyase_GLase GLase 34.5 2.1E+02 0.0045 32.2 9.4 72 50-122 13-89 (332)
160 cd00311 TIM Triosephosphate is 34.3 74 0.0016 34.2 5.6 49 64-118 77-125 (242)
161 PRK09267 flavodoxin FldA; Vali 33.9 2.7E+02 0.0059 27.5 9.3 74 38-114 44-117 (169)
162 PRK13210 putative L-xylulose 5 33.7 65 0.0014 34.4 5.2 59 58-117 94-153 (284)
163 cd06604 GH31_glucosidase_II_Ma 33.6 92 0.002 34.8 6.5 73 50-123 13-90 (339)
164 cd04740 DHOD_1B_like Dihydroor 33.5 99 0.0022 33.6 6.6 60 56-119 100-163 (296)
165 smart00854 PGA_cap Bacterial c 33.4 3.1E+02 0.0067 28.9 10.2 121 61-215 63-208 (239)
166 PF05763 DUF835: Protein of un 33.1 2.6E+02 0.0055 27.5 8.7 106 89-215 1-114 (136)
167 cd06416 GH25_Lys1-like Lys-1 i 33.1 1E+02 0.0023 31.4 6.4 89 46-137 54-157 (196)
168 cd01299 Met_dep_hydrolase_A Me 32.9 1.1E+02 0.0023 33.7 6.8 59 56-117 118-180 (342)
169 PRK13209 L-xylulose 5-phosphat 32.4 2.6E+02 0.0056 29.9 9.5 104 54-187 53-161 (283)
170 cd02810 DHOD_DHPD_FMN Dihydroo 32.3 91 0.002 33.7 6.1 60 56-119 109-171 (289)
171 PF07691 PA14: PA14 domain; I 32.2 1.9E+02 0.0041 27.3 7.6 70 472-549 47-122 (145)
172 TIGR00433 bioB biotin syntheta 31.8 67 0.0015 34.7 5.0 52 61-115 123-176 (296)
173 PRK09997 hydroxypyruvate isome 31.3 69 0.0015 34.0 4.9 60 58-117 85-144 (258)
174 PF12733 Cadherin-like: Cadher 31.1 1E+02 0.0022 27.1 5.2 55 475-546 16-71 (88)
175 PRK12858 tagatose 1,6-diphosph 30.9 45 0.00097 37.7 3.4 66 49-117 98-163 (340)
176 COG5309 Exo-beta-1,3-glucanase 30.8 3.9E+02 0.0084 29.5 10.1 119 56-222 61-179 (305)
177 KOG4039 Serine/threonine kinas 30.4 79 0.0017 32.9 4.7 65 52-123 103-172 (238)
178 cd06564 GH20_DspB_LnbB-like Gl 30.1 3.4E+02 0.0073 30.2 10.2 143 56-215 15-196 (326)
179 cd06597 GH31_transferase_CtsY 29.9 1.2E+02 0.0027 34.0 6.8 73 50-122 13-110 (340)
180 PLN02877 alpha-amylase/limit d 29.7 1E+02 0.0022 39.6 6.4 21 97-117 466-486 (970)
181 PLN02784 alpha-amylase 29.5 72 0.0016 40.3 5.1 57 61-117 524-588 (894)
182 PF01055 Glyco_hydro_31: Glyco 29.3 1.2E+02 0.0025 35.0 6.6 71 55-126 40-112 (441)
183 TIGR00676 fadh2 5,10-methylene 29.0 2.3E+02 0.0051 30.7 8.5 109 43-165 125-246 (272)
184 PRK09875 putative hydrolase; P 28.8 5.2E+02 0.011 28.6 11.2 89 28-136 7-95 (292)
185 cd00544 CobU Adenosylcobinamid 28.6 3.3E+02 0.0072 27.4 9.0 49 153-209 101-149 (169)
186 cd02742 GH20_hexosaminidase Be 28.4 1.4E+02 0.0031 32.8 6.8 60 55-117 13-92 (303)
187 PRK12331 oxaloacetate decarbox 28.2 1.2E+02 0.0025 35.7 6.3 56 50-117 88-143 (448)
188 PF14587 Glyco_hydr_30_2: O-Gl 28.1 3E+02 0.0065 31.8 9.3 118 86-221 93-226 (384)
189 PRK15492 triosephosphate isome 28.0 1.1E+02 0.0023 33.4 5.6 49 64-118 87-135 (260)
190 PTZ00372 endonuclease 4-like p 27.9 9E+02 0.02 28.2 13.2 52 62-121 145-202 (413)
191 cd08560 GDPD_EcGlpQ_like_1 Gly 27.8 1.5E+02 0.0033 33.7 7.0 53 59-117 246-298 (356)
192 TIGR03234 OH-pyruv-isom hydrox 27.3 84 0.0018 33.1 4.6 61 57-117 83-143 (254)
193 TIGR00542 hxl6Piso_put hexulos 27.2 1E+02 0.0022 33.1 5.3 55 59-117 95-153 (279)
194 cd06418 GH25_BacA-like BacA is 27.1 2.3E+02 0.0049 29.8 7.7 90 56-167 50-140 (212)
195 PRK00042 tpiA triosephosphate 27.0 1.1E+02 0.0025 33.0 5.6 50 63-118 78-127 (250)
196 PF01120 Alpha_L_fucos: Alpha- 26.7 9.5E+02 0.021 27.0 15.4 55 267-347 288-343 (346)
197 cd00537 MTHFR Methylenetetrahy 26.6 1.9E+02 0.0042 31.1 7.3 103 49-165 138-249 (274)
198 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.6 1.5E+02 0.0033 32.2 6.6 49 55-115 88-136 (275)
199 cd06568 GH20_SpHex_like A subg 26.6 1.6E+02 0.0035 32.9 6.9 62 56-117 16-95 (329)
200 PF14701 hDGE_amylase: glucano 26.4 1.9E+02 0.0041 33.8 7.4 99 56-160 20-135 (423)
201 PF01075 Glyco_transf_9: Glyco 26.3 48 0.001 34.5 2.6 77 40-119 104-194 (247)
202 cd04882 ACT_Bt0572_2 C-termina 26.2 1.3E+02 0.0029 24.1 4.7 55 57-113 10-64 (65)
203 COG0156 BioF 7-keto-8-aminopel 26.1 75 0.0016 36.6 4.2 79 26-116 123-207 (388)
204 PRK06703 flavodoxin; Provision 25.7 2.9E+02 0.0063 26.7 7.8 103 38-165 46-148 (151)
205 PRK14567 triosephosphate isome 25.5 1.2E+02 0.0027 32.8 5.5 49 64-118 78-126 (253)
206 COG2515 Acd 1-aminocyclopropan 25.4 8.1E+02 0.018 27.6 11.6 189 97-337 76-270 (323)
207 COG1523 PulA Type II secretory 25.4 96 0.0021 38.4 5.1 54 64-117 206-285 (697)
208 PF03102 NeuB: NeuB family; I 25.1 1E+02 0.0023 33.1 4.8 115 54-208 52-171 (241)
209 PF07905 PucR: Purine cataboli 25.0 4.3E+02 0.0093 25.0 8.6 67 38-117 40-106 (123)
210 cd04739 DHOD_like Dihydroorota 24.5 2.6E+02 0.0057 31.1 8.1 69 45-119 101-172 (325)
211 COG2884 FtsE Predicted ATPase 24.4 55 0.0012 34.4 2.4 15 646-660 55-69 (223)
212 KOG0622 Ornithine decarboxylas 24.4 99 0.0021 35.8 4.6 63 55-118 190-253 (448)
213 TIGR01698 PUNP purine nucleoti 24.3 1.1E+02 0.0024 32.9 4.8 40 37-76 47-87 (237)
214 PRK14040 oxaloacetate decarbox 24.3 1.4E+02 0.0029 36.4 6.1 54 50-115 89-142 (593)
215 PLN02540 methylenetetrahydrofo 24.2 1.5E+02 0.0032 35.9 6.3 89 63-165 161-258 (565)
216 PF13380 CoA_binding_2: CoA bi 24.1 1.7E+02 0.0038 27.5 5.6 44 55-114 63-106 (116)
217 TIGR00587 nfo apurinic endonuc 24.0 4.5E+02 0.0097 28.3 9.6 83 61-165 14-98 (274)
218 cd07381 MPP_CapA CapA and rela 24.0 5.5E+02 0.012 26.8 10.0 126 61-215 67-210 (239)
219 TIGR01676 GLDHase galactonolac 24.0 95 0.0021 37.3 4.6 42 176-217 375-419 (541)
220 PF08924 DUF1906: Domain of un 23.9 1.9E+02 0.0042 28.2 6.1 91 56-166 36-127 (136)
221 COG3320 Putative dehydrogenase 23.9 37 0.0008 38.8 1.2 37 99-136 175-214 (382)
222 COG0149 TpiA Triosephosphate i 23.8 1.4E+02 0.0031 32.4 5.5 47 65-118 82-129 (251)
223 cd06562 GH20_HexA_HexB-like Be 23.7 8.1E+02 0.018 27.6 11.8 63 55-117 15-90 (348)
224 PRK07259 dihydroorotate dehydr 23.4 1.8E+02 0.0039 31.8 6.4 59 56-118 102-165 (301)
225 PRK14566 triosephosphate isome 23.4 1.4E+02 0.003 32.6 5.4 49 64-118 88-136 (260)
226 PRK10966 exonuclease subunit S 23.2 5.8E+02 0.013 29.5 10.8 85 43-139 42-135 (407)
227 cd03789 GT1_LPS_heptosyltransf 22.7 1.2E+02 0.0027 32.2 4.9 89 43-136 124-224 (279)
228 TIGR01361 DAHP_synth_Bsub phos 22.3 2.5E+02 0.0054 30.5 7.1 81 28-117 13-96 (260)
229 PF02811 PHP: PHP domain; Int 22.2 1.7E+02 0.0036 28.3 5.4 44 60-116 18-61 (175)
230 PF14606 Lipase_GDSL_3: GDSL-l 21.9 5.9E+02 0.013 26.3 9.3 123 41-211 2-131 (178)
231 PRK10422 lipopolysaccharide co 21.8 1.6E+02 0.0036 32.7 5.8 64 53-119 197-273 (352)
232 PTZ00333 triosephosphate isome 21.7 1.7E+02 0.0037 31.8 5.7 48 65-118 83-130 (255)
233 PLN02561 triosephosphate isome 21.7 1.6E+02 0.0034 32.0 5.4 50 63-118 80-129 (253)
234 PLN02389 biotin synthase 21.6 1.1E+02 0.0025 34.9 4.6 50 61-113 178-229 (379)
235 PRK10569 NAD(P)H-dependent FMN 21.3 1.9E+02 0.0042 29.7 5.8 80 42-132 2-83 (191)
236 PLN02231 alanine transaminase 21.2 2.2E+02 0.0048 34.1 7.0 60 53-116 251-310 (534)
237 TIGR02109 PQQ_syn_pqqE coenzym 21.1 2.5E+02 0.0054 31.3 7.1 53 53-116 35-87 (358)
238 PRK05265 pyridoxine 5'-phospha 21.1 1.5E+02 0.0033 31.9 5.0 50 56-123 111-161 (239)
239 PLN02429 triosephosphate isome 20.9 1.5E+02 0.0033 33.2 5.1 49 64-118 140-188 (315)
240 cd03334 Fab1_TCP TCP-1 like do 20.9 2.9E+02 0.0063 29.8 7.3 61 41-118 87-160 (261)
241 TIGR03700 mena_SCO4494 putativ 20.7 74 0.0016 35.8 2.8 51 60-113 149-204 (351)
242 PF00120 Gln-synt_C: Glutamine 20.6 1.7E+02 0.0037 31.3 5.5 61 56-121 67-139 (259)
243 PF03422 CBM_6: Carbohydrate b 20.6 3.4E+02 0.0074 25.0 6.9 74 469-548 30-111 (125)
244 PRK13361 molybdenum cofactor b 20.6 2.7E+02 0.0059 30.9 7.2 54 59-116 102-160 (329)
245 PF07755 DUF1611: Protein of u 20.6 65 0.0014 35.8 2.3 115 43-222 35-151 (301)
246 COG0076 GadB Glutamate decarbo 20.3 1.6E+02 0.0034 34.7 5.4 77 35-130 151-249 (460)
247 PF09587 PGA_cap: Bacterial ca 20.1 6.2E+02 0.013 26.8 9.5 80 34-121 122-227 (250)
248 TIGR03128 RuMP_HxlA 3-hexulose 20.0 2E+02 0.0044 29.3 5.7 52 48-116 57-108 (206)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.4e-227 Score=1960.39 Aligned_cols=776 Identities=66% Similarity=1.184 Sum_probs=730.1
Q ss_pred cccceeEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHH
Q 003649 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (805)
Q Consensus 23 ~~~~~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~f 102 (805)
.-.+.+|+||+++|+|||||++|+||+|||||+||++|+|||+||||||||||+||||||+|||+||+|||+|++||++|
T Consensus 24 ~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~F 103 (840)
T PLN03059 24 SHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKF 103 (840)
T ss_pred ccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHH
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003649 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (805)
Q Consensus 103 l~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QI 182 (805)
|++|+|+||||||||||||||||++||||.||+++|+|++||+|++|+++|++|+++|+++|++++|+++|||||||+||
T Consensus 104 l~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 104 IKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred HHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecCCCCCCcccccCCCCCccCCCCCCCCCCCccccccccccccc
Q 003649 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTE 262 (805)
Q Consensus 183 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~~~~~~~~p~~P~~~tE~w~Gwf~~ 262 (805)
|||||++..+|+.+|++||+||++|++++|++|||+||+|.++++++++||||.+|+.|.++++.+|+||||||+|||++
T Consensus 184 ENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 184 ENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhh
Confidence 99999987778889999999999999999999999999998889999999999999999988888999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 003649 263 FGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIK 342 (805)
Q Consensus 263 wG~~~~~r~~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~pKy~~lr~l~~~i~ 342 (805)
||+++++|+++|+|+++++||++|+|++||||||||||||||||+++++|||||||||+|+|++++|||.|||+||++++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999997789999999999999
Q ss_pred hhhccccCCCCcccCCCCccceeeeecCCcceeeeeeccCCCcceEEEeCCeeeecCCCceeecCCCCceeeccceeeee
Q 003649 343 LCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQ 422 (805)
Q Consensus 343 ~~~~~l~~~~p~~~~~g~~~~~~vy~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~svsilpdc~~v~~nta~v~~q 422 (805)
.|+++|+..+|...+||+.+|+++|...+ .|+||+.|+++..+.+|+|+|++|.||||||||||||++++|||+++++|
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q 422 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQ 422 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccc
Confidence 99999998889888999999999999766 79999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccccCCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCeeeecCcc
Q 003649 423 HTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAG 502 (805)
Q Consensus 423 ~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~ 502 (805)
++.++..+ ....+.|+++.|++.+...+.+++++.++||+++|+|.+||+||+|+|....++..++++.+++|+|.+++
T Consensus 423 ~~~~~~~~-~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~ 501 (840)
T PLN03059 423 SSQMKMNP-VGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAG 501 (840)
T ss_pred cceeeccc-ccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccC
Confidence 87764432 22456999999995433245688899999999999999999999999998776655677888999999999
Q ss_pred eEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeecEEEccccCCCccCcc
Q 003649 503 HAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTW 582 (805)
Q Consensus 503 d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr~NyG~~~e~~~kGI~G~V~l~g~~~g~~dLs~ 582 (805)
|++||||||+++|+++++..+..++++.+|+|+.|.|+|+||||||||+|||++|+++.|||+|+|+|+|++++++||++
T Consensus 502 d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~ 581 (840)
T PLN03059 502 HALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSG 581 (840)
T ss_pred cEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceeccc
Confidence 99999999999999999887888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECCeeeeeeee
Q 003649 583 QKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWM 662 (805)
Q Consensus 583 ~~W~y~vgL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~twYk~~F~~p~g~dpv~Ldl~g~gKG~vwVNG~niGRYWp 662 (805)
+.|.|+++|+||.++||+.++..+++|.+.+..+. .+||+|||++|++|++.|||||||+|||||+|||||+||||||+
T Consensus 582 ~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~ 660 (840)
T PLN03059 582 WKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWP 660 (840)
T ss_pred CccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccc
Confidence 99999999999999999876666899987654444 56899999999999999999999999999999999999999998
Q ss_pred ccc--cCCCcccccCCCcCCccccCCCCCCceeeeecCcccccCCccEEEEEEecCCCCcceEEEeechhhhcccccccC
Q 003649 663 AYA--KGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHH 740 (805)
Q Consensus 663 ~~~--~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~wLk~g~N~LVvfEe~gg~p~~I~~~~~~~~~vc~~~~e~~ 740 (805)
.++ +|| +.|||+|+|+++||+||||+||||||||||+|||+|+|+||||||+|++|+.|+|+++++++||++++|+|
T Consensus 661 ~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~ 739 (840)
T PLN03059 661 AYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQ 739 (840)
T ss_pred cccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccC
Confidence 753 577 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCCCCeEEeecCCCCeEEEEEeeeeCCCcccccCcccccccCCCcccc
Q 003649 741 PTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAM 803 (805)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~Is~i~FASfG~p~G~Cg~f~~g~c~a~~s~~~ 803 (805)
| ++++|++.+........|+++|+|+.|++||+|+|||||+|+|+|++|+.|+|||++|+++
T Consensus 740 p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~v 801 (840)
T PLN03059 740 P-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDA 801 (840)
T ss_pred C-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHH
Confidence 5 6999999666544467999999999999999999999999999999999999999998875
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-175 Score=1471.41 Aligned_cols=631 Identities=62% Similarity=1.128 Sum_probs=592.5
Q ss_pred cceeEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHH
Q 003649 25 QCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIK 104 (805)
Q Consensus 25 ~~~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~ 104 (805)
.++.|+||+++|+|||+|++++||+|||||++||||+|+|+|||++|+|+|+||||||.|||+||+|||+|++||++||+
T Consensus 16 ~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFik 95 (649)
T KOG0496|consen 16 SSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIK 95 (649)
T ss_pred ceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccc
Q 003649 105 TVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (805)
Q Consensus 105 la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIEN 184 (805)
+|++.||||+||+||||||||++||||.||+.+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+||||
T Consensus 96 l~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIEN 173 (649)
T KOG0496|consen 96 LIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIEN 173 (649)
T ss_pred HHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecCCCCCCcccccCCCCCcc-CCCC-CCCCCCCccccccccccccc
Q 003649 185 EYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWFTE 262 (805)
Q Consensus 185 Eyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~-~~~~-~~~p~~P~~~tE~w~Gwf~~ 262 (805)
|||.+..+|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. +++|++|+||||||+|||++
T Consensus 174 EYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~ 253 (649)
T KOG0496|consen 174 EYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTH 253 (649)
T ss_pred hhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhh
Confidence 999998889999999999999999999999999999999999999999999999 9998 99999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 003649 263 FGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIK 342 (805)
Q Consensus 263 wG~~~~~r~~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~pKy~~lr~l~~~i~ 342 (805)
||++++.|++||+|+.|++|+++|+|++|||||||||||||||| ++++|||||||||| |..|+|||+|+|.+|..++
T Consensus 254 wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d 330 (649)
T KOG0496|consen 254 WGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYD 330 (649)
T ss_pred hCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhh
Confidence 99999999999999999999999999999999999999999998 99999999999999 9999999999999999999
Q ss_pred hhhccccCCCCcccCCCCccceeeeecCCcceeeeeeccCCCcceEEEeCCeeeecCCCceeecCCCCceeeccceeeee
Q 003649 343 LCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQ 422 (805)
Q Consensus 343 ~~~~~l~~~~p~~~~~g~~~~~~vy~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~svsilpdc~~v~~nta~v~~q 422 (805)
.|++.+..+++...++|+.+++ |++||.|++....+.+.|++.+|.+|+|||+|||||++++||||++.+|
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~ 401 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ 401 (649)
T ss_pred hcCccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc
Confidence 9999999999887777766544 9999999999999999999999999999999999999999999998643
Q ss_pred ccccccccccccccccccccccccccCCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCeeeec-Cc
Q 003649 423 HTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVE-SA 501 (805)
Q Consensus 423 ~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~-~~ 501 (805)
|....||+++ |..++ .++|++|.|+++.+.+++ +.|+|. ++
T Consensus 402 ---------------~~~~~e~~~~-------------~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~ 443 (649)
T KOG0496|consen 402 ---------------WISFTEPIPS-------------EAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSL 443 (649)
T ss_pred ---------------cccccCCCcc-------------ccccC---cceEEEEEEeeccccCCC-------ceEeecccc
Confidence 6666676553 34433 677888888887655442 467788 99
Q ss_pred ceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeecEEEccccCCCccCc
Q 003649 502 GHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLT 581 (805)
Q Consensus 502 ~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr~NyG~~~e~~~kGI~G~V~l~g~~~g~~dLs 581 (805)
+|++||||||+++|+++++.++..+.+.+++.|+.|.|+|+||||||||+||| +++++.|||+|+|+|+|. +|++
T Consensus 444 g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~ 518 (649)
T KOG0496|consen 444 GHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLT 518 (649)
T ss_pred cceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccc
Confidence 99999999999999999998888899999999999999999999999999999 889999999999999997 6888
Q ss_pred cCCcEEeccCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECCeeeeeee
Q 003649 582 WQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYW 661 (805)
Q Consensus 582 ~~~W~y~vgL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~twYk~~F~~p~g~dpv~Ldl~g~gKG~vwVNG~niGRYW 661 (805)
++.|.|+++|+||.+.+|++++..+++|...+..+. .+|++||| +|++|++.+||||||.|||||+|||||+||||||
T Consensus 519 ~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW 596 (649)
T KOG0496|consen 519 WTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYW 596 (649)
T ss_pred eeecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCccccccc
Confidence 889999999999999999998888999988765444 47999999 9999999999999999999999999999999999
Q ss_pred eccccCCCcccccCCCcCCccccCCCCCCceeeeecCcccccCCccEEEEEEecCCCCcceEEEeechhhhccccccc
Q 003649 662 MAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEH 739 (805)
Q Consensus 662 p~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~wLk~g~N~LVvfEe~gg~p~~I~~~~~~~~~vc~~~~e~ 739 (805)
|++ | | |++|||||+|||++.|+||||||+|++|..|+|+++++..+|+.+.|+
T Consensus 597 ~~~-----------G-------------~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 597 PSF-----------G-------------P-QRTYHVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred CCC-----------C-------------C-ceEEECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeecccC
Confidence 975 5 7 666779999999999999999999999999999999999999988763
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.9e-91 Score=761.15 Aligned_cols=297 Identities=42% Similarity=0.811 Sum_probs=233.2
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003649 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (805)
+|+|||||++|+||||||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCC
Q 003649 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG 194 (805)
Q Consensus 115 lR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~ 194 (805)
|||||||||||++||+|.||.+++++++||+|+.|+++|++|+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999952
Q ss_pred cchHHHHHHHHHHHHcCCCC-cceEecCCC--------CCCcccccCCCCCccCC--------CCCCCCCCCcccccccc
Q 003649 195 AAGHAYVNWAAKMAVGLDTG-VPWVMCKED--------DAPDPVINSCNGFYCDA--------FSPNKPYKPTLWTEAWS 257 (805)
Q Consensus 195 ~~~~~Y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~vi~t~ng~~~~~--------~~~~~p~~P~~~tE~w~ 257 (805)
.++++||+.|++++++.+++ ++.++++.. ++|+..+.+++++.|.. ....+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 666777642 23443455555566632 12557889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcc----cccCcCCCCCCCCCCCCchhHHH
Q 003649 258 GWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGH 333 (805)
Q Consensus 258 Gwf~~wG~~~~~r~~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDYdApl~E~G~~~~pKy~~ 333 (805)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||||||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999887654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003649 334 LKQLHEA 340 (805)
Q Consensus 334 lr~l~~~ 340 (805)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=360.01 Aligned_cols=290 Identities=24% Similarity=0.324 Sum_probs=218.4
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeecccchHHHHHHHHH
Q 003649 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (805)
Q Consensus 29 v~~d~~~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (805)
|.+++..+++||+|++++||++||+|+|+++|.|+|+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 88998 999999
Q ss_pred HcCCEEEEccCc-ccccccCCCCCCeEecccCCeeee---------cCChhhHHHHHHHHHHHHHHHHccccccccCCce
Q 003649 108 RVGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (805)
Q Consensus 108 ~~GL~VilR~GP-YicAEw~~GGlP~WL~~~p~~~~R---------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpI 177 (805)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|++++++.+++|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999987653333 346668888877555444433 5899999
Q ss_pred EEeccccccCCCcccCCcchHHHHHHHHHHHHcC-CCCcceEecC-CCCCCc-ccccCCC-----CCcc--CCCCCCCCC
Q 003649 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCK-EDDAPD-PVINSCN-----GFYC--DAFSPNKPY 247 (805)
Q Consensus 178 I~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~-~~~~p~-~vi~t~n-----g~~~--~~~~~~~p~ 247 (805)
|+|||+||||++.+.++.|.+.+..||++-+-.+ ..+-+|=+.- ..+..+ ..|.+.+ ...- -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965556668888888999877321 2223331111 000000 0111111 1100 012222222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeeeecCCCCC------CCCCCC---c---
Q 003649 248 K----PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F--- 309 (805)
Q Consensus 248 ~----P~~~tE~w~Gwf-~~wG~~~~~r~-~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 309 (805)
+ +....|.|-+|| +.|..++-... .+--++.+++.|....+ -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 566778888999 77777665555 44456667777777766 6999999999999 665553 2
Q ss_pred ----ccccCcCCCCCCCCCCCC
Q 003649 310 ----ITTSYDYDAPLDEYGLMR 327 (805)
Q Consensus 310 ----~~TSYDYdApl~E~G~~~ 327 (805)
..|+|++++.+.+.|.++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 579999999999999864
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.74 E-value=2e-18 Score=192.58 Aligned_cols=142 Identities=22% Similarity=0.329 Sum_probs=110.3
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCC
Q 003649 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (805)
Q Consensus 50 iHy~R~~~e~W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~G 128 (805)
+++...+++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 3456678999999999999999999996 56799999999999999 899999999999999999974 67
Q ss_pred CCCeEecc-cCCeee----------------ecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc
Q 003649 129 GFPVWLKY-VPGISF----------------RTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK 191 (805)
Q Consensus 129 GlP~WL~~-~p~~~~----------------Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~ 191 (805)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++| .||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 78999974 566432 13468899999999999999888554 8999999999987433
Q ss_pred cCCcchHHHHHHHHHHHH
Q 003649 192 SLGAAGHAYVNWAAKMAV 209 (805)
Q Consensus 192 ~~~~~~~~Y~~~l~~~~~ 209 (805)
....+.++|.+||++.+.
T Consensus 144 ~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp -SHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 233477889999999985
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.47 E-value=1.5e-12 Score=141.07 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=125.1
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHH
Q 003649 29 VTYDRKAILINGQRRILISGSIHYPR------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (805)
Q Consensus 29 v~~d~~~f~idGk~~~l~sG~iHy~R------~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~f 102 (805)
|.+.++.|+|||||++|.+...|... .+++.|+.+|++||++|+|+|++ .++-+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 57889999999999999999999732 58999999999999999999999 3333344 99
Q ss_pred HHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003649 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (805)
Q Consensus 103 l~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QI 182 (805)
+++|.++||+|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++.+.+++ ..||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 99999999999987621112233322211 245578889888887777777766644 59999999
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecCCCC--CCcccc-cCCCCCcc-----CCCC----C--CCCCC
Q 003649 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDD--APDPVI-NSCNGFYC-----DAFS----P--NKPYK 248 (805)
Q Consensus 183 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~--~p~~vi-~t~ng~~~-----~~~~----~--~~p~~ 248 (805)
-||- ....+++.|.+++++.+.+.|+....... ..+... +...+.|- +.+. . ..+++
T Consensus 129 gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccC---------ccccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 9998 24578889999999999999875544310 111111 11111111 0111 1 35789
Q ss_pred Ccccccccccccc
Q 003649 249 PTLWTEAWSGWFT 261 (805)
Q Consensus 249 P~~~tE~w~Gwf~ 261 (805)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.33 E-value=1.3e-10 Score=137.71 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=112.1
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003649 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (805)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~------R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~ 100 (805)
.+|++++..|+|||||+++.+...|.. .++++.|+.+|+.||++|+|+|++ . |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----s-h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----S-HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----c-cCCCC-----------H
Confidence 558889999999999999999999863 257889999999999999999999 3 44432 3
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEec--------ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccc
Q 003649 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK--------YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFAS 172 (805)
Q Consensus 101 ~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~--------~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~ 172 (805)
+|+++|.|+||+|+.... . -|+..|+. ..+....-..+|.+.++.++-+++++.+. .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~-------~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARD-------K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhc-------c
Confidence 899999999999998852 1 11111211 01111111234555554444444444433 5
Q ss_pred cCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 173 QGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 173 ~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
|+..||||-|-||.... ......+++.|.+.+++++.+.|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 66799999999997531 1234578889999999999988875543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.16 E-value=5.5e-10 Score=139.13 Aligned_cols=257 Identities=18% Similarity=0.220 Sum_probs=153.8
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003649 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (805)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~------R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~ 100 (805)
.+|+++++.|+|||||++|.+...|.. .++++.|+.+|+.||++|+|+|++ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 457888899999999999999998842 247899999999999999999999 4444455
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003649 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (805)
Q Consensus 101 ~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~ 180 (805)
+|+++|.|+||+|+-.. |..|..|..-+ +...-+++|.+.++ +.+++..++++. +|+..||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~Rd----rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHAQ----KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHhC----CCCCEEEEE
Confidence 99999999999999986 33333222111 00112356666543 344445555532 577899999
Q ss_pred ccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecCCCCCCcccccCCCCCcc-----CCCCCCCCCCCcccccc
Q 003649 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-----DAFSPNKPYKPTLWTEA 255 (805)
Q Consensus 181 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~-----~~~~~~~p~~P~~~tE~ 255 (805)
-+.||-+. + . .++.+.+.+++++.+.|+. ..+.... .+.+...-.|. ..+....+++|++.+|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999753 2 1 2467788888888888753 3322111 11111111121 12233446799999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHH-----------H-------HhCCceeeeeeeecCCCCCCCCCCCcccccCcCC
Q 003649 256 WSGWFTEFGGAVHRRPVQDLAFAVARF-----------I-------QKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYD 317 (805)
Q Consensus 256 w~Gwf~~wG~~~~~r~~~d~a~~~~~~-----------l-------~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYd 317 (805)
--+ .|... ...++.-..+.+. + ..+|. -|+.+|| .||-+. -..++--+
T Consensus 514 ~ha----mgn~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~---~~~~ygG-d~g~~p----~~~~f~~~ 579 (1021)
T PRK10340 514 AHA----MGNGP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGN---VWYKYGG-DYGDYP----NNYNFCID 579 (1021)
T ss_pred Hhc----cCCCC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCC---EEEEECC-CCCCCC----CCcCcccc
Confidence 421 12100 0112222111110 0 00111 2445555 355331 11223334
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHH
Q 003649 318 APLDEYGLMRQPKYGHLKQLHEAIK 342 (805)
Q Consensus 318 Apl~E~G~~~~pKy~~lr~l~~~i~ 342 (805)
.-++-++.+ .|.+...|.+.+-++
T Consensus 580 Glv~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 580 GLIYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred eeECCCCCC-ChhHHHHHHhcceEE
Confidence 678888988 699999998865443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.15 E-value=7.5e-10 Score=137.85 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=109.2
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003649 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (805)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~------R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~ 100 (805)
.+|+++++.|+|||||++|.+...|.. +++++.|+++|+.||++|+|+|++ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 446788889999999999999999842 468999999999999999999999 4545556
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003649 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (805)
Q Consensus 101 ~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~ 180 (805)
+|+++|.|+||+|+-... . | ..|-.|.. . =.+|+.|.+++ .+++..++++. +|+..||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~---~~~~~~mV~Rd----rNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAM---SERVTRMVQRD----RNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHH---HHHHHHHHHhC----CCCCEEEEE
Confidence 999999999999998862 1 1 11211210 0 13567776554 44555555532 577799999
Q ss_pred ccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 181 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
-+.||-+. + ...+.+.+.+++++.+.|+....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999753 2 13456777788888888875543
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.3e-08 Score=123.15 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=96.6
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCCC-----C-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003649 27 STVTYDRKAILINGQRRILISGSIHYPR-----S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (805)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~R-----~-~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~ 100 (805)
.+|+++...|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| . |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 5689999999999999999999999733 3 4555899999999999999999 3 66654 4
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003649 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (805)
Q Consensus 101 ~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~ 180 (805)
+|++||.++||+||-.+ ..||..+ | +|+.|++.+..=+++++...| |+..||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~~--~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHGM--P-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcCC--C-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEEE
Confidence 99999999999999996 4444322 1 788888887766666666555 55699999
Q ss_pred ccccccCC
Q 003649 181 QIENEYGP 188 (805)
Q Consensus 181 QIENEyg~ 188 (805)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999875
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.86 E-value=4.9e-09 Score=98.24 Aligned_cols=69 Identities=32% Similarity=0.654 Sum_probs=50.1
Q ss_pred cCCceEEEEEEeCCCCCCCeE-Ee--eCCCceEEEEECCeeeeeeeeccccCCCcccccCCCcCCccccCCCCCCceeee
Q 003649 619 QQSLKWYKAYFDAPTGNEPLA-LD--LRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWY 695 (805)
Q Consensus 619 ~~~~twYk~~F~~p~g~dpv~-Ld--l~g~gKG~vwVNG~niGRYWp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlY 695 (805)
.....|||++|..-..+..+. |+ .....+++|||||++|||||+. +| ||++++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf~ 88 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTFS 88 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEEE
Confidence 346799999996422211233 33 3456889999999999999965 46 999988
Q ss_pred ecCcccccCCccEEEEE
Q 003649 696 HVPRSWLKPTKNLLVVF 712 (805)
Q Consensus 696 hVP~~wLk~g~N~LVvf 712 (805)
||..+|+.++|.|+|+
T Consensus 89 -~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 89 -VPAGILKYGNNVLVVL 104 (111)
T ss_dssp -E-BTTBTTCEEEEEEE
T ss_pred -eCceeecCCCEEEEEE
Confidence 9999999876666554
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.82 E-value=4.1e-08 Score=103.89 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=110.1
Q ss_pred CCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-CCCce-eeecccchHHHHHHHHHHcCCEEEEc
Q 003649 39 NGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-PSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 39 dGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE-p~~G~-ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
+|+++.+.+-+.|+... ..-++.+++||++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999994321 1677899999999999999999995554 67764 66666779999999999999999987
Q ss_pred cCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCccc--CC
Q 003649 117 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--LG 194 (805)
Q Consensus 117 ~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~--~~ 194 (805)
+ ++. |.|...... -...+...+...++++.|++++|++ .+|++++|=||....... ..
T Consensus 82 ~----h~~------~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 L----HNA------PGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EES------TTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSSSGCSTTSTTTTS
T ss_pred e----ccC------ccccccccc---cccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecCCccccCCccccc
Confidence 5 221 666322111 1122334445555666677766533 479999999998763211 00
Q ss_pred ----cchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 195 ----AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 195 ----~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
..-..+++.+.+..|+.+.+.+++.-.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 112456666777778888887665533
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.66 E-value=1.2e-07 Score=88.94 Aligned_cols=84 Identities=27% Similarity=0.399 Sum_probs=58.6
Q ss_pred hhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCe-eeec-CcceEEEEEECCEEEEEEEccccCceeEEeeccc-ccC
Q 003649 460 LEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTVE-SAGHAVHVFINGQFLGSAFGTRENRRFTFSGPAN-LRA 536 (805)
Q Consensus 460 ~Eql~~t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~-L~v~-~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~-l~~ 536 (805)
.+..+..++.+|++|||++|.....+. ... |.+. +.+++++|||||+++|+..+.. ....+|+.|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 566667778999999999997543331 113 4444 7899999999999999988322 12245555543 566
Q ss_pred CCCeEEEEEecCCc
Q 003649 537 GINKIALLSIAVGL 550 (805)
Q Consensus 537 G~n~L~lLven~Gr 550 (805)
+.|.|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 77888999999996
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.27 E-value=5.7e-06 Score=81.85 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=72.2
Q ss_pred CCCCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCC-CeEEEE
Q 003649 466 TRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALL 544 (805)
Q Consensus 466 t~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~-n~L~lL 544 (805)
.....++.||+++|.++.+. .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|+|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34578999999999986532 24556899999999999999999999987643 345666665688887 999999
Q ss_pred EecCCcccccCCC-CccccceeecEEEc
Q 003649 545 SIAVGLPNVGLHY-ETWETGVRGAVVLH 571 (805)
Q Consensus 545 ven~Gr~NyG~~~-e~~~kGI~G~V~l~ 571 (805)
+.+.....+-+.+ .....||.++|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543331111 13579999999874
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.14 E-value=3.7e-05 Score=83.57 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=89.5
Q ss_pred cccceeEEEecCcEE--ECCEEeEEEEEEecCCC-----------CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc
Q 003649 23 LIQCSTVTYDRKAIL--INGQRRILISGSIHYPR-----------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG 89 (805)
Q Consensus 23 ~~~~~~v~~d~~~f~--idGk~~~l~sG~iHy~R-----------~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G 89 (805)
...-..|+..++.|+ .+|++|.|.+-...+.. ..++.|+++|..||++|+|||++|-. .|.
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v----dp~-- 78 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV----DPS-- 78 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT--
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe----CCC--
Confidence 334456888899998 79999999988776532 35789999999999999999999632 233
Q ss_pred eeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCCh--hhHHHHHHHHHHHHHHHHcc
Q 003649 90 HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG--PFKVAMQGFTQKIVQMMKNE 167 (805)
Q Consensus 90 ~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~--~y~~~~~~~~~~i~~~i~~~ 167 (805)
.|=++++++.+++|+|||+-.+. |+..+...+| .|-...-.-+.++++.++++
T Consensus 79 -------~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 79 -------KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp -------S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred -------CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 37889999999999999998642 2333444455 45443333344556777755
Q ss_pred ccccccCCceEEeccccccCCCccc--CCcchHHHHHHHHHHHHcCCC-Ccce
Q 003649 168 KLFASQGGPIILSQIENEYGPESKS--LGAAGHAYVNWAAKMAVGLDT-GVPW 217 (805)
Q Consensus 168 ~l~~~~GGpII~~QIENEyg~~~~~--~~~~~~~Y~~~l~~~~~~~g~-~vP~ 217 (805)
+ ++++.=+.||--+-... -.+.-|+.++.+|+-.++.+. .+|+
T Consensus 134 ~-------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 D-------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp T-------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred C-------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4 89999999998542110 012345555666666666655 4564
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.04 E-value=1.1e-05 Score=86.05 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=88.4
Q ss_pred CCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHH
Q 003649 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (805)
Q Consensus 81 Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i 160 (805)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 433333 533 6899987533 345678888888888
Q ss_pred HHHHHccccccccCCceEEeccccccCCCc-------ccCCcchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 161 VQMMKNEKLFASQGGPIILSQIENEYGPES-------KSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 161 ~~~i~~~~l~~~~GGpII~~QIENEyg~~~-------~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
+.+++ |.|..|+|=||--+.. ..+...+.+|+...-+.+++.+.++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 4689999999953211 0112235689999999999998888888865
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.73 E-value=6.7e-05 Score=85.99 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-.-.+++|+.|.++||.+|+-. -+=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL--------~Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL--------YHWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee--------ccCCccHHHHh
Confidence 568999999999999999999999999999 799999998899999999999999988664 13458999986
Q ss_pred cCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 137 ~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
..|- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 6553 4566777777777777777773
No 18
>PLN02705 beta-amylase
Probab=97.71 E-value=0.00011 Score=85.11 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=82.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 5677889999999999999999999999998 699999996 567799999999995 5554 22333 222
Q ss_pred -CCCeEecc----cCCeeee------------------------cCChhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003649 129 -GFPVWLKY----VPGISFR------------------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~R------------------------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~ 179 (805)
-||.|+.+ +|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 411 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITA 411 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeE
Confidence 38999986 5776442 1124466666666655544442 367888
Q ss_pred ecc
Q 003649 180 SQI 182 (805)
Q Consensus 180 ~QI 182 (805)
+||
T Consensus 412 I~V 414 (681)
T PLN02705 412 VEI 414 (681)
T ss_pred EEe
Confidence 887
No 19
>PLN02905 beta-amylase
Probab=97.70 E-value=0.00013 Score=84.85 Aligned_cols=113 Identities=23% Similarity=0.430 Sum_probs=83.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 799999996 567799999999996 4554 22332 222
Q ss_pred -CCCeEecc----cCCeeee------------------------cCChhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003649 129 -GFPVWLKY----VPGISFR------------------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~R------------------------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~ 179 (805)
-||.|+.+ +|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 429 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISM 429 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEE
Confidence 38999986 5776542 2224577777777666655543 357888
Q ss_pred ecc
Q 003649 180 SQI 182 (805)
Q Consensus 180 ~QI 182 (805)
+||
T Consensus 430 I~V 432 (702)
T PLN02905 430 VEV 432 (702)
T ss_pred EEe
Confidence 887
No 20
>PLN02801 beta-amylase
Probab=97.69 E-value=0.00013 Score=83.29 Aligned_cols=81 Identities=26% Similarity=0.534 Sum_probs=64.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5677889999999999999999999999998 699999996 567799999999996 5554 22322 112
Q ss_pred -CCCeEecc----cCCeee
Q 003649 129 -GFPVWLKY----VPGISF 142 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~ 142 (805)
-||.|+.+ +|+|.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999985 577643
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.68 E-value=0.00035 Score=80.53 Aligned_cols=142 Identities=21% Similarity=0.393 Sum_probs=95.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5677889999999999999999999999998 799999996 557799999999996 4554 22332 222
Q ss_pred -CCCeEecc----cCCeeeec--------------CC----------hhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003649 129 -GFPVWLKY----VPGISFRT--------------DN----------GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~Rt--------------~~----------~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~ 179 (805)
-||.|+.+ +|+|.+.. ++ +.|.+.|+.|-..+.+.|. +-|.-
T Consensus 199 IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~---------~~I~e 269 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG---------DTIVE 269 (573)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc---------CceeE
Confidence 38999986 57765421 11 3455556555555444332 46888
Q ss_pred ecc------ccccCCCcc-----cCC-----cchHHHH-HHHHHHHHcCC
Q 003649 180 SQI------ENEYGPESK-----SLG-----AAGHAYV-NWAAKMAVGLD 212 (805)
Q Consensus 180 ~QI------ENEyg~~~~-----~~~-----~~~~~Y~-~~l~~~~~~~g 212 (805)
+|| |=-|-+|.. .|. .|=.+|| ..|++.|.+.|
T Consensus 270 I~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G 319 (573)
T PLN00197 270 IQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAG 319 (573)
T ss_pred EEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhC
Confidence 887 334555421 111 1323455 55777776654
No 22
>PLN02161 beta-amylase
Probab=97.63 E-value=0.0002 Score=81.91 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=64.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 4666788999999999999999999999998 799999996 567799999999996 4553 22322 222
Q ss_pred -CCCeEecc----cCCeee
Q 003649 129 -GFPVWLKY----VPGISF 142 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~ 142 (805)
-||.|+.+ +|+|.+
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999985 577754
No 23
>PLN02803 beta-amylase
Probab=97.58 E-value=0.00024 Score=81.63 Aligned_cols=81 Identities=23% Similarity=0.530 Sum_probs=64.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCC----
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~G---- 128 (805)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++ ||.. --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 599999996 567799999999996 4554 22322 112
Q ss_pred -CCCeEecc----cCCeee
Q 003649 129 -GFPVWLKY----VPGISF 142 (805)
Q Consensus 129 -GlP~WL~~----~p~~~~ 142 (805)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 38999986 577754
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.53 E-value=0.00032 Score=76.52 Aligned_cols=225 Identities=23% Similarity=0.345 Sum_probs=113.9
Q ss_pred cCcEE-ECCEEeEEEEEEecC---CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCCC-C-------C----CCceeeec
Q 003649 33 RKAIL-INGQRRILISGSIHY---PRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH-E-------P----SPGHYNFE 94 (805)
Q Consensus 33 ~~~f~-idGk~~~l~sG~iHy---~R~~~e~W~~~l~k~Ka~GlN~V~tYvf--Wn~h-E-------p----~~G~ydF~ 94 (805)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=|+ |.-+ . | .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46676 7999999998 5554 4678899999999999999999999877 4422 1 1 12237776
Q ss_pred cc-----chHHHHHHHHHHcCCEEEEcc---CcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 95 GS-----YDLVRFIKTVQRVGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 95 G~-----~dl~~fl~la~~~GL~VilR~---GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
.- ..+++.|+.+.+.||.+.|-| +||+-+-|-+| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 54 479999999999999975432 34444445443 1 111 136788999999999996
Q ss_pred cccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcce-EecCCC-CCCc-----cccc--CC-CCC
Q 003649 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW-VMCKED-DAPD-----PVIN--SC-NGF 236 (805)
Q Consensus 167 ~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~-~~~~~~-~~p~-----~vi~--t~-ng~ 236 (805)
.+ +|| |=|-||+ . ......++.+.+.+.+++.+..-+. ++..+. ..++ +-++ .. .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 64 455 7799999 1 2335677788888888776543332 222211 1110 0011 11 111
Q ss_pred cc---C-------CCC-CCCCCCCcccccc-ccccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 003649 237 YC---D-------AFS-PNKPYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGG 287 (805)
Q Consensus 237 ~~---~-------~~~-~~~p~~P~~~tE~-w~Gwf~~wG~~~~~r~~~d~a~~~~~~l~~g~ 287 (805)
.. + .+. ...|.||.+..|- |.|--..+.+.....+++|+....=+-+-.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 0 111 4578999999994 55544333333345678887665544445565
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.01 E-value=0.00061 Score=76.61 Aligned_cols=112 Identities=19% Similarity=0.318 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEE--EccCcccccc----cCCCCCC
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAE----WNFGGFP 131 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPYicAE----w~~GGlP 131 (805)
.-+..|+++|++|++.|.+.|.|.+.|.. |++|||+| ..+++++|++.||++. |.. --|+- .-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 56788999999999999999999999997 99999996 6688999999999964 443 12211 1111389
Q ss_pred eEecc---cCCeeeecC--------------ChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003649 132 VWLKY---VPGISFRTD--------------NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (805)
Q Consensus 132 ~WL~~---~p~~~~Rt~--------------~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QI 182 (805)
.|+.+ ..+|.+... ... ++.-+.|++.....++ .++ +-|.-+||
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 99974 225532111 112 4444555555555565 332 57777776
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.01 E-value=0.00094 Score=73.81 Aligned_cols=156 Identities=17% Similarity=0.290 Sum_probs=109.6
Q ss_pred EEEEEecCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003649 45 LISGSIHYPRSTPE-MWEDLIRKAKDGGLDVIDTY--VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 45 l~sG~iHy~R~~~e-~W~~~l~k~Ka~GlN~V~tY--vfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYi 121 (805)
.++.+++..++..+ ..++.+. .-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~~----~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~---- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELFA----KHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT---- 79 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHHH----HH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE----
T ss_pred CEEEEechhHcCCcHHHHHHHH----HhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee----
Confidence 68999999887665 4444444 458888774 5599999999999999 89999999999999985331
Q ss_pred ccccCCCCCCeEecccCCeeeecC-ChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc---------
Q 003649 122 CAEWNFGGFPVWLKYVPGISFRTD-NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK--------- 191 (805)
Q Consensus 122 cAEw~~GGlP~WL~~~p~~~~Rt~-~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~--------- 191 (805)
-=|.. ..|.|+...+.. ... .+..++.++++++.++.++++. |.|..|=|=||-=.-..
T Consensus 80 -LvW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 80 -LVWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp -EEESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred -EEEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 11533 789999875110 000 1247889999999998888722 79999999999632110
Q ss_pred cCCcchHHHHHHHHHHHHcCCCCcceEecCC
Q 003649 192 SLGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (805)
Q Consensus 192 ~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~ 222 (805)
.+...|.+|+..+-++|++...++.++.++-
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 1223456799999999999888888888774
No 27
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.89 E-value=0.00096 Score=77.17 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
..|+++|+.||++|+|+.+.-+-|...+|. +|++|-+|..-.+++|+.+.++||..|+-. -+-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999999999999999999999977653 3667999998
Q ss_pred ccCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 136 ~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
+.-|- .|+...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75553 4566777777777777777773
No 28
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.74 E-value=0.0075 Score=72.22 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCC-CeEEEEEe
Q 003649 468 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSI 546 (805)
Q Consensus 468 d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~-n~L~lLve 546 (805)
+..|..||+++|.++.. +.|....|++.++...+.|||||++||...+.. ..+.|+++-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 36788999999998643 224557899999999999999999999976543 245565554577785 49999997
Q ss_pred cCCcc---cccCCC-------------C-ccccceeecEEEccc
Q 003649 547 AVGLP---NVGLHY-------------E-TWETGVRGAVVLHGL 573 (805)
Q Consensus 547 n~Gr~---NyG~~~-------------e-~~~kGI~G~V~l~g~ 573 (805)
|.-.. ..|... + ....||.++|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 64211 011110 0 136899999999544
No 29
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.71 E-value=0.0032 Score=62.20 Aligned_cols=66 Identities=24% Similarity=0.477 Sum_probs=50.1
Q ss_pred CCceEEEEEEeCCCCC--CCeEEeeCCC-ceEEEEECCeeeeeeeeccccCCCcccccCCCcCCccccCCCCCCceeeee
Q 003649 620 QSLKWYKAYFDAPTGN--EPLALDLRSM-GKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYH 696 (805)
Q Consensus 620 ~~~twYk~~F~~p~g~--dpv~Ldl~g~-gKG~vwVNG~niGRYWp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYh 696 (805)
....||+++|++|+.. ..++|.+.|. ....|||||+-||+-.-.+ ..- -+-
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~-------------------------~~~-~~d 120 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY-------------------------TPF-EFD 120 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT-------------------------S-E-EEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc-------------------------CCe-EEe
Confidence 4679999999999753 4589999987 5899999999999976211 122 255
Q ss_pred cCcccccCCc-cEEEEE
Q 003649 697 VPRSWLKPTK-NLLVVF 712 (805)
Q Consensus 697 VP~~wLk~g~-N~LVvf 712 (805)
|+. .|++|+ |+|.|.
T Consensus 121 It~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 121 ITD-YLKPGEENTLAVR 136 (167)
T ss_dssp CGG-GSSSEEEEEEEEE
T ss_pred Chh-hccCCCCEEEEEE
Confidence 764 789888 998873
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.012 Score=64.43 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=101.8
Q ss_pred HHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCC
Q 003649 67 AKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 146 (805)
Q Consensus 67 ~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~ 146 (805)
+|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+. -=+.| |.+ -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 6777766666767799999999999999 57899999999999653 22233 533 6888987633 245
Q ss_pred hhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCC----Cc---ccCCcchHHHHHHHHHHHHcCCCCcceEe
Q 003649 147 GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP----ES---KSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (805)
Q Consensus 147 ~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~----~~---~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~ 219 (805)
++..+.|++++..++.+++ |.|+.|-|=||--. +. +..+..+.+|+++.-+.|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7899999999999999998 35999999999632 11 11224678999999999999888877777
Q ss_pred cCC
Q 003649 220 CKE 222 (805)
Q Consensus 220 ~~~ 222 (805)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.50 E-value=0.0091 Score=75.57 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=68.5
Q ss_pred cEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCc
Q 003649 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 550 (805)
Q Consensus 471 gYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr 550 (805)
+-.||+++|.++.. +.|....|+++++...++|||||++||...+... .+.|++.--|+.|.|+|+|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecC-
Confidence 56799999998643 2345578999999999999999999998765432 3556554457889999999987432
Q ss_pred ccccCCCCc----cccceeecEEEccc
Q 003649 551 PNVGLHYET----WETGVRGAVVLHGL 573 (805)
Q Consensus 551 ~NyG~~~e~----~~kGI~G~V~l~g~ 573 (805)
.|.+++. ...||.++|.|.-.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEe
Confidence 2333332 35899999998544
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.48 E-value=0.0074 Score=67.10 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=80.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCC
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG 139 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~ 139 (805)
+|.++.+|+.|+|.||.=| |+- |.. |..|.+ +..+..+-|+++||.|+|-.- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~--P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVN--PYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS---TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-ccC--CcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 4789999999999999987 554 544 666555 666667777889999999862 11 1122 233
Q ss_pred eeee-----c-CChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCc-ccCC--cc---hHHHHHHHHHH
Q 003649 140 ISFR-----T-DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPES-KSLG--AA---GHAYVNWAAKM 207 (805)
Q Consensus 140 ~~~R-----t-~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~-~~~~--~~---~~~Y~~~l~~~ 207 (805)
-+.. . +-..-.+++..|+..++..|++ +|=.+=||||.||..+-. +..+ .. -.++++...+.
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~A 162 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKA 162 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHH
Confidence 2211 1 3356778999999999999994 456788999999974311 1111 11 22355555667
Q ss_pred HHcCCCCcce-EecCC
Q 003649 208 AVGLDTGVPW-VMCKE 222 (805)
Q Consensus 208 ~~~~g~~vP~-~~~~~ 222 (805)
+|+.+.++.+ +++++
T Consensus 163 Vr~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 163 VREVDPNIKVMLHLAN 178 (332)
T ss_dssp HHTHSSTSEEEEEES-
T ss_pred HHhcCCCCcEEEEECC
Confidence 7765555443 44443
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.39 E-value=0.0072 Score=70.43 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
.|+++|+.||++|+|+.++-+-|....|. +|++|-+|-.-.+++|+.+.++||..++-. -+=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 48899999999999999999999999997 567898999999999999999999977664 24468999976
Q ss_pred c-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
. -|- .|+...++..+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 443 456666666677766666666
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.28 E-value=0.0088 Score=69.66 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
..|+++|+.||++|+|+.++-+-|...+|. ++++|=+|-.-.+++|+.+.++||..++-. .+=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447999999999999999999999999997 556788888899999999999999987653 2456899997
Q ss_pred cc-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 136 ~~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+. -|- .|+...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 443 345555555566665555555
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.25 E-value=0.065 Score=54.00 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-----CC---CceeeecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003649 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-----PS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE-----p~---~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAE 124 (805)
-.++++.|+.+++.||++|+|+|=. -|...+ |. ++.|.-....-|+.+|++|++.||.|++-.+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 4789999999999999999999842 132221 11 2233334446899999999999999998753 1
Q ss_pred cCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHH
Q 003649 125 WNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWA 204 (805)
Q Consensus 125 w~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l 204 (805)
-|.|... .|.... ..+-+.|+..+. . .+.+....=+|=|=.|..... ....+..+.|
T Consensus 88 -----~~~~w~~--------~~~~~~---~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWE---AERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred -----Cchhhhc--------cCHHHH---HHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 1223321 222221 111222344343 1 223344777888888887642 2345556666
Q ss_pred HHHHHcCCCCcceE
Q 003649 205 AKMAVGLDTGVPWV 218 (805)
Q Consensus 205 ~~~~~~~g~~vP~~ 218 (805)
.+.+++.--+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 66665543355543
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.019 Score=65.65 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=71.1
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEEcccCCCCCCCC--ceeee--cccchHHHHHHHHHHcCCEEEEcc----Ccccc
Q 003649 56 TPEMW-----EDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNF--EGSYDLVRFIKTVQRVGLYAHLRI----GPYVC 122 (805)
Q Consensus 56 ~~e~W-----~~~l~k~Ka~GlN~V~tYvfWn~hEp~~--G~ydF--~G~~dl~~fl~la~~~GL~VilR~----GPYic 122 (805)
...-| ++.+..||.+|||+||.++.|..+++.. ..|-. +--.-|++.|+-|++.||+|+|-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45557 8899999999999999999944446543 22222 211378899999999999999873 11111
Q ss_pred cccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccC
Q 003649 123 AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (805)
Q Consensus 123 AEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg 187 (805)
-| ..|.... .. ......++..+-++.|+.+.+ +.-.||++|+=||--
T Consensus 146 ~~------~s~~~~~--~~---~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~ 192 (407)
T COG2730 146 HE------HSGYTSD--YK---EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPN 192 (407)
T ss_pred cC------ccccccc--cc---ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCc
Confidence 11 1222110 00 023334444445555555555 345899999999985
No 37
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.11 E-value=0.021 Score=72.33 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=67.1
Q ss_pred ccEEEEEEEeecCCCcccccCCC-CCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecC
Q 003649 470 SDYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAV 548 (805)
Q Consensus 470 sgYlwY~T~v~~~~~~~~~~~g~-~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~ 548 (805)
.+-.||+++|.++.+- .+. ...|+++++...+.|||||+++|...+.. ..+.|++.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999986431 122 46899999999999999999999876543 3455665545788999999988422
Q ss_pred CcccccCCCCc----cccceeecEEEccc
Q 003649 549 GLPNVGLHYET----WETGVRGAVVLHGL 573 (805)
Q Consensus 549 Gr~NyG~~~e~----~~kGI~G~V~l~g~ 573 (805)
.-|.+++. ...||..+|.|.-.
T Consensus 193 ---sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 ---SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred ---CCCCccccCCceeeccccceEEEEEc
Confidence 12333332 34799999998543
No 38
>PLN02998 beta-glucosidase
Probab=96.10 E-value=0.0051 Score=71.98 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|-+|-.-.+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678899999999999999999999866543 13348999986
Q ss_pred c-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
. -|-.=|..=..|.++++.-++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532222224455555555555555554
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.02 E-value=0.03 Score=65.24 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|+.++-+-|...+|. +|++|=+|-.-.+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 448899999999999999999999999996 678888999999999999999999877654 13348999987
Q ss_pred cCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
.-|- .|+...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 6553 455555566666666665555
No 40
>PLN02814 beta-glucosidase
Probab=95.98 E-value=0.0061 Score=71.43 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|+-++-+-|.-.+|. +|++|-+|-.-.+++|+.+.++||..++-. -=| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL-----~H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL-----YHY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe-----cCC---CCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866553 024 48999986
Q ss_pred c-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4432222223344444444444444444
No 41
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.96 E-value=0.0074 Score=70.24 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|+.++-+-|.-.+|. +|.+|-+|-.-.+++|+.+.++||.-++-. -+=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347899999999999999999999999996 578999999999999999999999866553 23358999987
Q ss_pred cCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
.-|- .|+...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 344444444444444444443
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.89 E-value=0.0096 Score=69.43 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
..|+++|+.||++|+|+.++-|-|.-.+|. +|++|=+|-.-.+++|+.+.++||..++-. -+=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999866543 1335899997
Q ss_pred cc-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 136 ~~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+. -|-.=|..=..|.++++.-++++.+.++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4532222223444555544555544444
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.79 E-value=0.01 Score=69.24 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
..|+++|+.||++|+|+.++-|-|.-.+|. +|++|=+|-.-.+++|+.+.++||.-++-. -+=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 567888898999999999999999866553 1335899997
Q ss_pred cc-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 136 ~~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+. -|-.=|..=..|.++++.-++++.+++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 5532222224455555555555555554
No 44
>PLN02849 beta-glucosidase
Probab=95.71 E-value=0.0097 Score=69.79 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
..|+++|+.||++|+|+-++-+-|.-.+|. .|++|=+|-.-.+++|+.+.++||.-++-. -+=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 478898999999999999999999866553 13348999986
Q ss_pred c-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 137 ~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532222223455555555555545444
No 45
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=95.46 E-value=0.0099 Score=52.30 Aligned_cols=39 Identities=38% Similarity=0.821 Sum_probs=28.3
Q ss_pred eecCCCCeEEEEEeeeeCCCcc-cccCccccc---ccCCCcccc
Q 003649 764 LQCAPGQSITSIEFASFGTPSG-TCGSFQKGT---CHAPNSHAM 803 (805)
Q Consensus 764 L~C~~g~~Is~i~FASfG~p~G-~Cg~f~~g~---c~a~~s~~~ 803 (805)
|+|++| .+..|.+|+||.+.+ .|++...+. |++++++++
T Consensus 1 L~C~~g-~~I~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~ 43 (80)
T PF02140_consen 1 LSCPPG-KVISIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSI 43 (80)
T ss_dssp EE-STT-EEEEEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHH
T ss_pred CCCcCC-CEEEEEEeecCCCCCCCCcCCCcCCCCccccccccch
Confidence 799999 888999999999998 898666664 999877654
No 46
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.13 Score=59.76 Aligned_cols=149 Identities=16% Similarity=0.266 Sum_probs=101.5
Q ss_pred CcEEECCEEeEEEEEEecC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHH
Q 003649 34 KAILINGQRRILISGSIHY-----PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQR 108 (805)
Q Consensus 34 ~~f~idGk~~~l~sG~iHy-----~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~ 108 (805)
-.|.|||.|.++.++.--+ -|.+-+.-+-.|+-++++|+|++++ |.. |. +.-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----Gv------YEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GV------YESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cc------ccchhHHHHhhh
Confidence 4689999999999887544 3456666777899999999999999 543 33 344599999999
Q ss_pred cCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccccc--
Q 003649 109 VGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY-- 186 (805)
Q Consensus 109 ~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEy-- 186 (805)
.||.|--.. =|.||-. ..|+.|+..++.=++.-+.+|+.+ ..||.+.=.||=
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccHH
Confidence 999885332 1345544 257889998888777777777654 488888755542
Q ss_pred CCCcccCCc-------chH----HHHHHHHHHHHcCCCCcceEecCC
Q 003649 187 GPESKSLGA-------AGH----AYVNWAAKMAVGLDTGVPWVMCKE 222 (805)
Q Consensus 187 g~~~~~~~~-------~~~----~Y~~~l~~~~~~~g~~vP~~~~~~ 222 (805)
.-.+..|+. .-+ -|.+-+++++..-.-..|.+|...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111111221 112 245567777777777889888664
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.069 Score=57.88 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH---HcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
=.|.|+-+|+.|+|-|+.-| ||..--..|+=.=-|+.|+.+.|++|+ ..||+|++..= .-.|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc-
Confidence 46899999999999999854 777655556655567899999999886 47999999851 111111
Q ss_pred cCCee------eecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccC
Q 003649 137 VPGIS------FRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (805)
Q Consensus 137 ~p~~~------~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg 187 (805)
+|+-+ ..-+-+.-++++-.|.+..+..|+++ |=-+=||||.||-.
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 23211 12233556778888999999999955 44567999999974
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=94.04 E-value=0.38 Score=56.54 Aligned_cols=330 Identities=19% Similarity=0.279 Sum_probs=156.1
Q ss_pred eEEEEEEecC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc--------CCCCCCCCc-----eeeecc--cch
Q 003649 43 RILISGSIHY------PRSTPEMWEDLIRKA---KDGGLDVIDTYVF--------WNGHEPSPG-----HYNFEG--SYD 98 (805)
Q Consensus 43 ~~l~sG~iHy------~R~~~e~W~~~l~k~---Ka~GlN~V~tYvf--------Wn~hEp~~G-----~ydF~G--~~d 98 (805)
..=++|++=- .+.+++.=+..|+.+ +-+|++.+|+.+- +.+.+ .|+ .|+... ...
T Consensus 76 i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~~ 154 (496)
T PF02055_consen 76 IDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKKY 154 (496)
T ss_dssp --EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHTT
T ss_pred EEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchhh
Confidence 3336776632 344555444444444 4589999999875 22222 233 222221 122
Q ss_pred HHHHHHHHHHc--CCEEEEccCcccccccCCCCCCeEecccCCe----eeec-CChhhHHHHHHHHHHHHHHHHcccccc
Q 003649 99 LVRFIKTVQRV--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNGPFKVAMQGFTQKIVQMMKNEKLFA 171 (805)
Q Consensus 99 l~~fl~la~~~--GL~VilR~GPYicAEw~~GGlP~WL~~~p~~----~~Rt-~~~~y~~~~~~~~~~i~~~i~~~~l~~ 171 (805)
+.-+|+.|++. +|+++.-| |. .|+|+.....+ .++. .++.|.+..-.|+.+-++.+++
T Consensus 155 ~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~----- 219 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK----- 219 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH-----
Confidence 34678877764 68888887 76 79999864332 2442 2456777777777777777774
Q ss_pred ccCCceEEeccccccCCC-------c-ccCCc-chHHHHH-HHHHHHHcCCC--CcceEecCC--CCCCc---ccccC--
Q 003649 172 SQGGPIILSQIENEYGPE-------S-KSLGA-AGHAYVN-WAAKMAVGLDT--GVPWVMCKE--DDAPD---PVINS-- 232 (805)
Q Consensus 172 ~~GGpII~~QIENEyg~~-------~-~~~~~-~~~~Y~~-~l~~~~~~~g~--~vP~~~~~~--~~~p~---~vi~t-- 232 (805)
+|=||=++-+.||-... . ..+.+ .-+++++ .|.-.+++.++ ++-+++++. .+.|+ .++.-
T Consensus 220 -~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~ 298 (496)
T PF02055_consen 220 -EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPE 298 (496)
T ss_dssp -TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHH
T ss_pred -CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChh
Confidence 45599999999997531 1 11211 2355664 47778888776 676666653 22332 22211
Q ss_pred ----CC--CCcc--C-C-------CCCCCCCCCccccccccccccccCCCCC---CCCHHHHHHHHHHHHHhCCceeeee
Q 003649 233 ----CN--GFYC--D-A-------FSPNKPYKPTLWTEAWSGWFTEFGGAVH---RRPVQDLAFAVARFIQKGGSFFNYY 293 (805)
Q Consensus 233 ----~n--g~~~--~-~-------~~~~~p~~P~~~tE~w~Gwf~~wG~~~~---~r~~~d~a~~~~~~l~~g~s~~n~Y 293 (805)
.. +++| . . .....|++.++.||-..|-- .|+.... ...++..+..+..-+..+.+ -|
T Consensus 299 A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~---gw 374 (496)
T PF02055_consen 299 AAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS---GW 374 (496)
T ss_dssp HHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE---EE
T ss_pred hHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce---ee
Confidence 11 2333 1 1 11346889999999876531 1221111 11234444444444555533 23
Q ss_pred ee-------ecCCCCCCC-CCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCCcccee
Q 003649 294 MY-------HGGTNFGRT-AGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAH 365 (805)
Q Consensus 294 M~-------hGGTNfG~~-~G~~~~~TSYDYdApl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~~~ 365 (805)
|. .||-|++.. ..++.++.. +. +| -.++|.|+.|..+.+||+.-...+-.. ........+..
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~v 444 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEAV 444 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeEE
Confidence 32 488887532 122322111 11 12 234799999999888876433222110 00011134555
Q ss_pred eeecCCcceeeeeeccCCCcc-eEEEeCC-------eeeecCCCce
Q 003649 366 VFSAGQQKCAAFLSNYNTKSA-ARVTFNG-------RQYNLPPWSI 403 (805)
Q Consensus 366 vy~~~~~~~~~fl~n~~~~~~-~~v~~~~-------~~~~lp~~sv 403 (805)
.|...++.-++-|.|..+... .+|++.+ ..+.|||.|+
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 666666666665566443322 2455542 2467777664
No 49
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.13 Score=59.28 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G--~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
..++++|+.||+||+|+.||-|-|...-|..+ +.+=.|-.-.+++++.|.++|+.-++-. .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 44789999999999999999999999999654 4888899999999999999999976653 2333799998
Q ss_pred cc-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 136 ~~-p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+. -|-.=|..=..|.++.+.-+++.-+.++
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 76 3532233333444444444444444444
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.86 E-value=11 Score=43.12 Aligned_cols=248 Identities=14% Similarity=0.156 Sum_probs=126.4
Q ss_pred cCCCCCHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeecccch-HHHHHHHHHHcCCEEEEccCcccc
Q 003649 51 HYPRSTPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 51 Hy~R~~~e~W~~~l~k~Ka~GlN~V~t-------YvfWn~hEp~~G~ydF~G~~d-l~~fl~la~~~GL~VilR~GPYic 122 (805)
.+.+..++.|. +.+|++|+.-|=. +-.|.-....-..-+-.-.+| +.+|.+.|+++||.+-+=-.|
T Consensus 77 ~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 33446777775 4678888875432 222444322111111111345 557889999999977663222
Q ss_pred cccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHH
Q 003649 123 AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVN 202 (805)
Q Consensus 123 AEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~ 202 (805)
.+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.++|.++ ||-|+|- +-..+.. ...--++
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~ 213 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSK 213 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHH
Confidence 47764 4443211111223456788999988888888888733 3445542 2111110 1111234
Q ss_pred HHHHHHHcCCCCc-ceEecCCCCCCcccccCCCCCc-c-CCCCCCC-CCCCcc-ccccccccccccCC-CCCCCCHHHHH
Q 003649 203 WAAKMAVGLDTGV-PWVMCKEDDAPDPVINSCNGFY-C-DAFSPNK-PYKPTL-WTEAWSGWFTEFGG-AVHRRPVQDLA 276 (805)
Q Consensus 203 ~l~~~~~~~g~~v-P~~~~~~~~~p~~vi~t~ng~~-~-~~~~~~~-p~~P~~-~tE~w~Gwf~~wG~-~~~~r~~~d~a 276 (805)
.+.++++++..+. -.+.++... . ..+...+++ + +...+.. ...|-- ++=.-.+|+=+-++ ....++++++.
T Consensus 214 ~l~~~~~~~qP~~~~vvvn~R~~-~--~~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li 290 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVVNDRWG-G--TGCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELI 290 (384)
T ss_pred HHHHHHHHhCCCCceEEEEcccc-c--cCCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHH
Confidence 5666666654442 112222210 0 000000010 1 1111111 011110 00011244433333 23467999999
Q ss_pred HHHHHHHHhCCce-eeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccC
Q 003649 277 FAVARFIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVS 350 (805)
Q Consensus 277 ~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~ 350 (805)
..+.+..++||++ +|. +-+.+|.+....-..|+++.+.++...+++-.
T Consensus 291 ~~l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~ 339 (384)
T smart00812 291 RDLVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYG 339 (384)
T ss_pred HHHhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeec
Confidence 9999999999984 232 34567888666778899999999877665533
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.70 E-value=0.36 Score=46.97 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=66.2
Q ss_pred HHHHHHHHCCCCEEEEccc----C-----CCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCe
Q 003649 62 DLIRKAKDGGLDVIDTYVF----W-----NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPV 132 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~tYvf----W-----n~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~ 132 (805)
..++.+|++|+|+|.++.= | ..|.+.|+- .+.-|.++++.|++.||.|++|.-.- -.|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467899999999999542 2 334455543 12356899999999999999998654 44444556799
Q ss_pred EecccCCee-------------eecCChhhHHHHHHHHHHHHHHH
Q 003649 133 WLKYVPGIS-------------FRTDNGPFKVAMQGFTQKIVQMM 164 (805)
Q Consensus 133 WL~~~p~~~-------------~Rt~~~~y~~~~~~~~~~i~~~i 164 (805)
|+...++=+ .-+-|.+|++.+.+-+++|+..+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644311 12336788877777777666544
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.98 E-value=1.8 Score=52.34 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=80.5
Q ss_pred HHH-HHHHHCCCCEEEE-cccCCCCCCCCc---------eeeecccchHHHHHHHHHHcCCEEEEccCccccc-----cc
Q 003649 62 DLI-RKAKDGGLDVIDT-YVFWNGHEPSPG---------HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCA-----EW 125 (805)
Q Consensus 62 ~~l-~k~Ka~GlN~V~t-YvfWn~hEp~~G---------~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicA-----Ew 125 (805)
++| .-+|++|+|+|+. .|+..-....=| .-.|.+..||.+|++.|++.||.|||-.=+-=++ -+
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 443 7779999999999 776532111001 1134556799999999999999999875331111 12
Q ss_pred CCCCCCeEecccCC---------eeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc--------ccccCC
Q 003649 126 NFGGFPVWLKYVPG---------ISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI--------ENEYGP 188 (805)
Q Consensus 126 ~~GGlP~WL~~~p~---------~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QI--------ENEyg~ 188 (805)
.+.|.|.|....+. ..+-..+|.-++++...++..++...=..+-..--..++.++- .||++.
T Consensus 240 ~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~ 319 (613)
T TIGR01515 240 EFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGG 319 (613)
T ss_pred ccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCC
Confidence 23344444332221 1233344544444333333333321111221111123332221 244432
Q ss_pred CcccCCcchHHHHHHHHHHHHcCCCCcceEe
Q 003649 189 ESKSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (805)
Q Consensus 189 ~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~ 219 (805)
- .......+++.+.+.+++...++-+|.
T Consensus 320 ~---~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 320 R---ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred c---CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1 122457899999999988776664443
No 53
>PRK09936 hypothetical protein; Provisional
Probab=90.75 E-value=0.61 Score=50.88 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=47.2
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc-chHHHHHHHHHHcCCEEEEc
Q 003649 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~-~dl~~fl~la~~~GL~VilR 116 (805)
.+++++.|+.+++.+|+.|++|+= |=|..- |.=||.|. ..|.+.++.|++.||.|++-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999864 456543 11188765 59999999999999999875
No 54
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.41 E-value=0.23 Score=57.01 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=107.7
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCC-CC---CCceeee-cccchHHHHHHHHHHc
Q 003649 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EP---SPGHYNF-EGSYDLVRFIKTVQRV 109 (805)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~h-Ep---~~G~ydF-~G~~dl~~fl~la~~~ 109 (805)
.|.++++++..++..--++++..++=+++|.-|+.+|+++++.. -+- |+ ++|.-+- +|..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888988888887777788877788889999999999999994 444 66 2332221 2345789999999999
Q ss_pred CCEEEEccCcccccccCCCCCCeEec----ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccc
Q 003649 110 GLYAHLRIGPYVCAEWNFGGFPVWLK----YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (805)
Q Consensus 110 GL~VilR~GPYicAEw~~GGlP~WL~----~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENE 185 (805)
+|+|+++- |.+==.+||.=.-+. +.|+-.+ -|+.++..-++|+..+++-.|.+ ..|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~~-------ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKLD-------PTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhccC-------hHHHHHHhcCC
Confidence 99998773 333223455422221 1233111 25677777788888888866644 47888999999
Q ss_pred cCCCcccCCcchHHHHHHHHHHHH
Q 003649 186 YGPESKSLGAAGHAYVNWAAKMAV 209 (805)
Q Consensus 186 yg~~~~~~~~~~~~Y~~~l~~~~~ 209 (805)
.... -...+..+++|.+.|.-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3221 12367789999999973
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=90.27 E-value=0.77 Score=46.22 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCC-------CCCcee-----eecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHE-------PSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE-------p~~G~y-----dF~G~~dl~~fl~la~~~GL~VilR~GPYicAE 124 (805)
-+-+.+.|..+|++|+|+|..-=++..-+ -.+..| .|....||.+|++.|+++||.||+-.=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 34566777789999999998854432221 122222 455668999999999999999999875544444
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.25 E-value=1.2 Score=49.27 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCC-------CCCC-------CceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNG-------HEPS-------PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~-------hEp~-------~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYi 121 (805)
.++.-++.|+++|++|+|+|-.=|-+.. .+|. +|. + -|.--|..+|+.|++.||.|+.+. .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 6788899999999999999966555421 2221 111 1 022269999999999999999776 111
Q ss_pred ccccCC----CCCCeEec-ccCCeeeec----CCh----hhHHHHHHHHHHHHHHHHccccccccCCceEEecccc
Q 003649 122 CAEWNF----GGFPVWLK-YVPGISFRT----DNG----PFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (805)
Q Consensus 122 cAEw~~----GGlP~WL~-~~p~~~~Rt----~~~----~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIEN 184 (805)
..--.. -.-|.|+. +.|+..... .+. +-..+|++|+..++..|.+ .+ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 110111 12477875 456543333 121 2346788888777665542 22 466778773
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.87 E-value=4.4 Score=49.34 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=74.5
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc-----cccc
Q 003649 64 IRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV-----CAEW 125 (805)
Q Consensus 64 l~k~Ka~GlN~V~t-Yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYi-----cAEw 125 (805)
+.-+|++|+|+|+. .|. |.+. .|.+ .|.+..||.+|++.|+++||.|||-.=|-= .+-+
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~ 250 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA 250 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence 46689999999997 231 2221 1111 234457999999999999999998742211 1122
Q ss_pred CCCCCCeEecccCC---------eeeecCChhhHHHHHHHHHHHHHHHHc----cccccccCCceEEe------cccccc
Q 003649 126 NFGGFPVWLKYVPG---------ISFRTDNGPFKVAMQGFTQKIVQMMKN----EKLFASQGGPIILS------QIENEY 186 (805)
Q Consensus 126 ~~GGlP~WL~~~p~---------~~~Rt~~~~y~~~~~~~~~~i~~~i~~----~~l~~~~GGpII~~------QIENEy 186 (805)
.+-|.|.+-..++. ..+...++. |++|+-..+..-.+ ..+....--.|+-. =+.|+|
T Consensus 251 ~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~e----Vr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~ 326 (639)
T PRK14706 251 HFDGGPLYEYADPRKGYHYDWNTYIFDYGRNE----VVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH 326 (639)
T ss_pred ccCCCcceeccCCcCCcCCCCCCcccCCCCHH----HHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccccccc
Confidence 23344544222221 112223333 33333222222211 01111100111111 167888
Q ss_pred CCCcccCCcchHHHHHHHHHHHHcCCCCcceE
Q 003649 187 GPESKSLGAAGHAYVNWAAKMAVGLDTGVPWV 218 (805)
Q Consensus 187 g~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~ 218 (805)
|... ...+..|++++.+.+++...++-+|
T Consensus 327 gg~~---n~~a~~fl~~ln~~v~~~~p~~~~i 355 (639)
T PRK14706 327 GGRE---NLEAIAFLKRLNEVTHHMAPGCMMI 355 (639)
T ss_pred CCcc---cHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 7532 2357789999999998876665333
No 58
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.72 E-value=2.9 Score=51.57 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEE-cccCC----CCCCCCce-----eeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 64 IRKAKDGGLDVIDT-YVFWN----GHEPSPGH-----YNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 64 l~k~Ka~GlN~V~t-YvfWn----~hEp~~G~-----ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
|.-+|++|+|+|+. .|+=. .|--.+.. =.|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999998 45310 01111111 124556799999999999999999874
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.34 E-value=4.4 Score=43.55 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEec
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYicAEw~~GGlP~WL~ 135 (805)
..-|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++.++.+++++.||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999942 2222 123344554 3578899999999999874 33321 11111
Q ss_pred ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc---chHHHHHHHHHHHHcCC
Q 003649 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (805)
Q Consensus 136 ~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~---~~~~Y~~~l~~~~~~~g 212 (805)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.+.+++++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122355556666667777777776 32 66776542 111100 000001 12245667777777777
Q ss_pred CCc
Q 003649 213 TGV 215 (805)
Q Consensus 213 ~~v 215 (805)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.42 E-value=9.1 Score=47.40 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEc-cc-------CCCCCC---CCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTY-VF-------WNGHEP---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tY-vf-------Wn~hEp---~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
.+.|++.|..+|++|+|+|+.- |+ |.++-. .+ .-.|.+..||.+||+.|+++||.|||-.=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4568899999999999999973 32 332210 00 113555679999999999999999987544
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.68 E-value=1 Score=50.92 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=48.6
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccc
Q 003649 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 46 ~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
++=|+.+...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 45577777778999999999999999988877 999999633121 147889999999999999999977443
No 62
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.84 E-value=5.9 Score=42.33 Aligned_cols=131 Identities=16% Similarity=0.236 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEeccc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYicAEw~~GGlP~WL~~~ 137 (805)
-|++.|+.++++|++.|+..+. ..|+ .....+|+ ..++..+.++++++||.|. +.++- -+ .+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~----~~---~~------- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSG----HR---RF------- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEeccc----cc---Cc-------
Confidence 5899999999999999999532 2221 01122333 3478999999999999875 22210 00 01
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc-cCCcchHHHHHHHHHHHHcCCCCc
Q 003649 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK-SLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 138 p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~-~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
.+.+.|+..++...+.++++++..+ .| |.+.|.+---..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1233566656666666777666666 22 556665421000000000 000112346777888888887754
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.82 E-value=11 Score=48.95 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCCCC--CCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 62 DLIRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~t-Yvf-------Wn~hEp--~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.|.-+|++|+|+|+. .|+ |.+.-- ..=.=.|.+..||.+|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4468899999999997 342 322100 0001134556799999999999999999874
No 64
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.64 E-value=6 Score=42.48 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHc-CCEEEE
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHL 115 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~-GL~Vil 115 (805)
.-|++.|+.+|++|++.|+.-+....-.. .......++.++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 67999999999999999999554321111 1111456899999999999 766554
No 65
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.04 E-value=16 Score=45.25 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 62 DLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~t-Yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
+.|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..||.+|++.|+++||.|||-.=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467889999999987 342 3221 1111 3455679999999999999999998644
No 66
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.40 E-value=1.9 Score=43.27 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=72.7
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeee
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 143 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~R 143 (805)
|+.++++|++.|+...........+ ..+++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 5789999999999965533322111 3478999999999999965321111 1111 111134
Q ss_pred cCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccc--cccCCCccc-CCcchHHHHHHHHHHHHcCCCCc
Q 003649 144 TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE--NEYGPESKS-LGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 144 t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIE--NEyg~~~~~-~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
+.+++ .+...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.+.+++++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777778888888777 33 6677777754 222211000 00123346677777777777654
No 67
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=81.10 E-value=24 Score=37.49 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=38.0
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 50 iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
+.|-+.+ ++++|++++++|++.|+.. . |. ..++.++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4455554 6789999999999999982 1 11 14799999999999999854
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.39 E-value=15 Score=41.05 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=73.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeec-c-cchHHHHHHHHHHcCCEEEEccCcccccccC
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-G-SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~t-------YvfWn~hEp~~G~ydF~-G-~~dl~~fl~la~~~GL~VilR~GPYicAEw~ 126 (805)
.++.-+..|+.+|+.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++|+|+|.|+
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI--------- 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI--------- 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE---------
Confidence 4567888999999999999865 34454444433222221 1 3699999999999999999997
Q ss_pred CCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHH
Q 003649 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAK 206 (805)
Q Consensus 127 ~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~ 206 (805)
+.|| |+..-++- +.++ + .+.+|.+- . +++--.+.+.|...-.+|.-.+++
T Consensus 82 -------------v~Fk--D~~la~~~--------pe~a---v-~~~~G~~w--~-d~~~~~WvnP~~~evw~Y~i~IA~ 131 (316)
T PF13200_consen 82 -------------VVFK--DPVLAEAH--------PEWA---V-KTKDGSVW--R-DNEGEAWVNPYSKEVWDYNIDIAK 131 (316)
T ss_pred -------------EEec--ChHHhhhC--------hhhE---E-ECCCCCcc--c-CCCCCccCCCCCHHHHHHHHHHHH
Confidence 2344 32221110 0000 1 12333322 1 333233344566677888888888
Q ss_pred HHHcCCCCc
Q 003649 207 MAVGLDTGV 215 (805)
Q Consensus 207 ~~~~~g~~v 215 (805)
.+.+.|++-
T Consensus 132 Eaa~~GFdE 140 (316)
T PF13200_consen 132 EAAKLGFDE 140 (316)
T ss_pred HHHHcCCCE
Confidence 888888764
No 69
>PRK01060 endonuclease IV; Provisional
Probab=80.05 E-value=35 Score=36.52 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE---EEccCcccccccCCCCCCeEecc
Q 003649 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA---HLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V---ilR~GPYicAEw~~GGlP~WL~~ 136 (805)
+++.|++++++|++.||..+- +-|.-.++.++- .++.++-+++++.||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 889999999999999999542 112111222222 26888999999999973 22 23331 1
Q ss_pred cCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec
Q 003649 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (805)
Q Consensus 137 ~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~Q 181 (805)
.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 2334567777777777777777666 33 55655554
No 70
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=80.02 E-value=2.2 Score=45.68 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
+...++-|+.+|++||++|++ +.|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999998 55655554 34677999999999999999988
No 71
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=79.65 E-value=22 Score=39.97 Aligned_cols=138 Identities=15% Similarity=0.237 Sum_probs=90.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH---HcCCEEEEccCcccccccCCCCC-
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGF- 130 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~VilR~GPYicAEw~~GGl- 130 (805)
..|+..+..++.||+.|++.--.|-.| |.|++-|++-++..- +.+|...|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 478899999999999999999888767 556777777776553 345655554 433220
Q ss_pred CeEecccCCeeeecCChhhH--HHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHH
Q 003649 131 PVWLKYVPGISFRTDNGPFK--VAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMA 208 (805)
Q Consensus 131 P~WL~~~p~~~~Rt~~~~y~--~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~ 208 (805)
=.|-.....+.+- ..|. +..+++++.|++.+++..++--+|=||+++=--.++ ++-++.++.+++.|
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1122221222111 1222 234677788888999877777788899987432222 24578999999999
Q ss_pred HcCCCCcceEecCC
Q 003649 209 VGLDTGVPWVMCKE 222 (805)
Q Consensus 209 ~~~g~~vP~~~~~~ 222 (805)
++.|+.-+.+....
T Consensus 185 ~~~G~~giyii~~~ 198 (345)
T PF14307_consen 185 KEAGLPGIYIIAVQ 198 (345)
T ss_pred HHcCCCceEEEEEe
Confidence 99999877554443
No 72
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=79.64 E-value=28 Score=39.79 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecc-cchHHHHHHHHHHcCCEEEE-ccCcccccccCCCCCCeEec
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG-SYDLVRFIKTVQRVGLYAHL-RIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G-~~dl~~fl~la~~~GL~Vil-R~GPYicAEw~~GGlP~WL~ 135 (805)
....+++++++++|++.|+.. ..+ ..|-..+.+. ..++.++-+++++.||.|.. -++-+-...|..|+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~------ 101 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG------ 101 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC------
Confidence 346689999999999999963 111 1111111100 23578999999999999753 33211111222222
Q ss_pred ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccc---ccCCCcccCCcc---hHHHHHHHHHHHH
Q 003649 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN---EYGPESKSLGAA---GHAYVNWAAKMAV 209 (805)
Q Consensus 136 ~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIEN---Eyg~~~~~~~~~---~~~Y~~~l~~~~~ 209 (805)
+-+.|+..+++.-+.+++.++.-+ .| |.+.|.+--.- ||.. ...+... -.+.++.+.+.++
T Consensus 102 ------las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~-~~d~~~a~~~~~e~L~~lae~A~ 168 (382)
T TIGR02631 102 ------FTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDG-AKDVRAALDRMREALNLLAAYAE 168 (382)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCcc-ccCHHHHHHHHHHHHHHHHHHHH
Confidence 334566666555555566665555 22 55554443221 1211 0001112 2234455555667
Q ss_pred cCCCCcceE
Q 003649 210 GLDTGVPWV 218 (805)
Q Consensus 210 ~~g~~vP~~ 218 (805)
+.|.+|.+.
T Consensus 169 ~~G~GV~la 177 (382)
T TIGR02631 169 DQGYGLRFA 177 (382)
T ss_pred hhCCCcEEE
Confidence 766666543
No 73
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.63 E-value=1.8 Score=45.97 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc--eee-------ecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYN-------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G--~yd-------F~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+.|.-+|++|+|+|..-=++......-| .-| |-+..||.+|++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688899999999998544442211111 112 2345799999999999999999875
No 74
>PRK09989 hypothetical protein; Provisional
Probab=79.37 E-value=18 Score=38.50 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
.+++|++++++|++.|+...+|. .+..++.++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999944332 2467888899999999864
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=78.82 E-value=28 Score=37.04 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccC
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p 138 (805)
-|++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48899999999999999983210 011111 121 24788899999999998753 2221 123333322
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccc-cC-CCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 139 GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE-YG-PESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 139 ~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENE-yg-~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
..++.-+++..+.+++.++.-+ .=|.+.|.+-.-.. +. .....+ +.-.+.++.|.+++.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~------~lGa~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK------EMNAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH------HhCCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444444455555555554 22556655522111 00 000000 122346788888888877644
No 76
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=78.29 E-value=3.7 Score=48.08 Aligned_cols=61 Identities=8% Similarity=0.211 Sum_probs=42.5
Q ss_pred HhHHH---HHHHHHHHCCCCEEEE-cccCCC-----CCCCCce-e-------------eecccchHHHHHHHHHHcCCEE
Q 003649 57 PEMWE---DLIRKAKDGGLDVIDT-YVFWNG-----HEPSPGH-Y-------------NFEGSYDLVRFIKTVQRVGLYA 113 (805)
Q Consensus 57 ~e~W~---~~l~k~Ka~GlN~V~t-YvfWn~-----hEp~~G~-y-------------dF~G~~dl~~fl~la~~~GL~V 113 (805)
.+.|. +.|.-+|++|+++|.. .+|-+. |--.+-. | .|-...||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 4566779999999988 455432 2222211 2 2334679999999999999999
Q ss_pred EEcc
Q 003649 114 HLRI 117 (805)
Q Consensus 114 ilR~ 117 (805)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9886
No 77
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.48 E-value=41 Score=35.45 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
-+++.+++++++|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 38899999999999999984321 13688999999999999864
No 78
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=76.24 E-value=6.6 Score=46.15 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=43.3
Q ss_pred EEEecCCCCCHhHHHHHHHHHH-HCCCCEEEEcccCCCC-C--------CCCc--eeeecccchHHHHHHHHHHcCCEEE
Q 003649 47 SGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTYVFWNGH-E--------PSPG--HYNFEGSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 47 sG~iHy~R~~~e~W~~~l~k~K-a~GlN~V~tYvfWn~h-E--------p~~G--~ydF~G~~dl~~fl~la~~~GL~Vi 114 (805)
-|+-|.--..++.|+..|+.++ +.|+.-|+. |++- . ..+| .|||+ .|+.+++...+.||.-+
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555567788999999886 889998887 4433 1 1233 39999 99999999999999988
Q ss_pred EccC
Q 003649 115 LRIG 118 (805)
Q Consensus 115 lR~G 118 (805)
++.|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7766
No 79
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.11 E-value=21 Score=38.31 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEeccc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYicAEw~~GGlP~WL~~~ 137 (805)
-|++.++.++++|++.|+..+. ..|+ ....++++ ..++.++.++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4899999999999999999532 1111 01112333 2468899999999999874 332110 0011
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc-------chHHHHHHHHHHHHc
Q 003649 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA-------AGHAYVNWAAKMAVG 210 (805)
Q Consensus 138 p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~-------~~~~Y~~~l~~~~~~ 210 (805)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+. |. ...++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 112455556666667777777666 32 66777542 11 000111 113466777888877
Q ss_pred CCCCc
Q 003649 211 LDTGV 215 (805)
Q Consensus 211 ~g~~v 215 (805)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 80
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=75.61 E-value=4.7 Score=48.13 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~t-Yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.++|.-+|++|+|+|+. .|+ |.+ ..|.+ .|.+..+|.+|++.|++.||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688899999999987 342 322 11211 24556799999999999999999874
No 81
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.56 E-value=14 Score=42.73 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=80.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcc------c-------CCCCCCCCceee-ecccchHHHHHHHHHHcCCEEEEccCcc
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYV------F-------WNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYv------f-------Wn~hEp~~G~yd-F~G~~dl~~fl~la~~~GL~VilR~GPY 120 (805)
..+..-.+.|.+++++|+|||-.=| + |..-- ||.+- =.|..=|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3788889999999999999985422 2 33222 33321 1344568888999999999999998887
Q ss_pred cccccCCCC---CCeEeccc-CCeee-ecCC-------hhhHHHHHHHHHHH-HHHHHccccccccCCceEEeccccccC
Q 003649 121 VCAEWNFGG---FPVWLKYV-PGISF-RTDN-------GPFKVAMQGFTQKI-VQMMKNEKLFASQGGPIILSQIENEYG 187 (805)
Q Consensus 121 icAEw~~GG---lP~WL~~~-p~~~~-Rt~~-------~~y~~~~~~~~~~i-~~~i~~~~l~~~~GGpII~~QIENEyg 187 (805)
.-|--..-. -|.|+... |+... |... .++.-+++.|+..+ +++++++ .|=++|.+-=+.
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765422111 25666543 44332 2221 35667888888887 6677744 677889876654
No 82
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=74.41 E-value=3.2 Score=42.03 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCceEEEEECCeeeeeeee-ccccCCCcccccCCCcCCccccCCCCCCceeeeecCcccccCCccEEEEE
Q 003649 644 SMGKGQVWINGQSIGRYWM-AYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVF 712 (805)
Q Consensus 644 g~gKG~vwVNG~niGRYWp-~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~wLk~g~N~LVvf 712 (805)
..++=+|.||| ..+..+. .+. .++|.|++ -+-+|..+.--+-||++.|++|.|+|.|=
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~---~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt 149 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG---NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLT 149 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEE
T ss_pred CCCCEEEEEcC-ccCCccccccC---CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEE
Confidence 44677899999 6777653 221 13444444 12334556566789999999999999764
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=74.21 E-value=6.5 Score=47.52 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCCCCCCCceee------ecccchHHHHHHHHHHcCCEEEEc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEPSPGHYN------FEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~t-Yvf-------Wn~hEp~~G~yd------F~G~~dl~~fl~la~~~GL~VilR 116 (805)
..|.=.++|.-+|+||+++||. .|. |.+ .|..- |-...||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5666677899999999999998 221 332 11221 333479999999999999999987
No 84
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=73.66 E-value=48 Score=35.29 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=64.3
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-eecccchHHHHHHHHHHcCCEEEEccCcccccccC
Q 003649 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (805)
Q Consensus 48 G~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~y-dF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~ 126 (805)
|..+..+.+ -++.|+++.+.|++.|+. ...+|..-.- +++ ..++.++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 344444444 337899999999999999 5555533110 122 236889999999999986542 3432
Q ss_pred CCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec
Q 003649 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (805)
Q Consensus 127 ~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~Q 181 (805)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777777777777666 32 55666553
No 85
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.28 E-value=46 Score=40.04 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcee--------eeccc----chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGHY--------NFEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tY-vfWn~hEp~~G~y--------dF~G~----~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
.++.=+..|..|+..-||.|+.| ..|.+|.|-|+.= |+.|+ .-+...|+.|++.||.++.=--=|-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 45677889999999999999999 7799999987533 23333 35779999999999999854332322
Q ss_pred ccc--CCCCCCeEecc-cCCe------ee--------e---cCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003649 123 AEW--NFGGFPVWLKY-VPGI------SF--------R---TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (805)
Q Consensus 123 AEw--~~GGlP~WL~~-~p~~------~~--------R---t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QI 182 (805)
-+. ..|=.|.|-+. +++- .+ . ..|+.+.++.-.=+.+.++.+.=...+..+=|+.--+
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-- 273 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-- 273 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--
T ss_pred ccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--
Confidence 222 35567788753 2210 11 1 2245555554443444443333223333443444333
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 183 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
-+.-|.... .-...|...|.++-..+ .+.+++++.
T Consensus 274 ~d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 274 YDYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GGTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred ccCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 222232110 12456777777776554 556676644
No 86
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=72.18 E-value=13 Score=48.65 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=71.5
Q ss_pred cEEECCEEeEEEEE-E--ecCCCC--CHhHHHHHHHHHHHCCCCEEEE-ccc-CC---CCCCCCceee----e----ccc
Q 003649 35 AILINGQRRILISG-S--IHYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVF-WN---GHEPSPGHYN----F----EGS 96 (805)
Q Consensus 35 ~f~idGk~~~l~sG-~--iHy~R~--~~e~W~~~l~k~Ka~GlN~V~t-Yvf-Wn---~hEp~~G~yd----F----~G~ 96 (805)
.+.|||++++.+.+ + -..++. +-+.|++.|..+|++|.|+|-. .++ =. ..=-..+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 35566633333222 2 223443 5588999999999999999976 333 11 0000112222 3 366
Q ss_pred chHHHHHHHHHHc-CCEEEEccCcccccccCCCCC-CeEecccCCeeeecCChhhHHHHHH
Q 003649 97 YDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQG 155 (805)
Q Consensus 97 ~dl~~fl~la~~~-GL~VilR~GPYicAEw~~GGl-P~WL~~~p~~~~Rt~~~~y~~~~~~ 155 (805)
.|+.++++.+++. ||++|+-. =|++=+. =.||.++|+.-....+.+|++..-.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~e 238 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPAIV 238 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhHHH
Confidence 7999999999996 99999874 2454443 3588888876556666666665433
No 87
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=71.34 E-value=19 Score=36.42 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=32.5
Q ss_pred CeeeecCcceEEEEEECCEEEEEEE----cc-ccC--ceeEEeecccccCCCCeEEEEEecCCc
Q 003649 494 PTLTVESAGHAVHVFINGQFLGSAF----GT-REN--RRFTFSGPANLRAGINKIALLSIAVGL 550 (805)
Q Consensus 494 ~~L~v~~~~d~~~VfVNg~~vGs~~----~~-~~~--~~~~~~~~i~l~~G~n~L~lLven~Gr 550 (805)
+.|.|...+ +-.+||||+.||... .+ ... .-.+++..--|+.|.|+|.+++-+-..
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 467777665 458999999999754 11 111 112344444588999999999976443
No 88
>PRK12313 glycogen branching enzyme; Provisional
Probab=70.92 E-value=7.3 Score=47.32 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 63 LIRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~t-Yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.|.-+|++|+|+|+. .|+ |.+ ..+.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358899999999996 453 211 11111 35566899999999999999999974
No 89
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=70.71 E-value=8.3 Score=41.25 Aligned_cols=53 Identities=11% Similarity=0.330 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
....++.++.+|+.||++|+. +.|..+++ ..+..++|+.+++.||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366778888999999999998 56666665 347889999999999999988874
No 90
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.71 E-value=6.1 Score=47.15 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceee----------ecccchHHHHHHHHHHcCCEEEEcc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~~G~yd----------F~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+-.-+.++|.-+|++|+|+|-. .+|=+-.. ..-|+ |.+..||.+|++.|+++||+|||-.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445678889999999999987 34322100 01222 4455799999999999999999874
No 91
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.48 E-value=16 Score=39.78 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=59.9
Q ss_pred cEEECCEEeEEEEE--EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec--ccchHHHHHHHHHHcC
Q 003649 35 AILINGQRRILISG--SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKTVQRVG 110 (805)
Q Consensus 35 ~f~idGk~~~l~sG--~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~--G~~dl~~fl~la~~~G 110 (805)
.+.+.|.|++++.| ++| .++.-.+.-+++|++|+..++.|.|=+.-. -+.|. |...+..+-+.|++.|
T Consensus 20 ~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~G 91 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYN 91 (266)
T ss_pred CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcC
Confidence 47777778999988 444 578888899999999999999997753333 23566 5788999999999999
Q ss_pred CEEEEcc
Q 003649 111 LYAHLRI 117 (805)
Q Consensus 111 L~VilR~ 117 (805)
|.++-.|
T Consensus 92 l~~~te~ 98 (266)
T PRK13398 92 LPVVTEV 98 (266)
T ss_pred CCEEEee
Confidence 9998886
No 92
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=69.91 E-value=11 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.464 Sum_probs=25.4
Q ss_pred CcceEEEEEECCEEEEEEEccccC--ceeEEeecc
Q 003649 500 SAGHAVHVFINGQFLGSAFGTREN--RRFTFSGPA 532 (805)
Q Consensus 500 ~~~d~~~VfVNg~~vGs~~~~~~~--~~~~~~~~i 532 (805)
...|.|.||++++++|++++..++ .++.|+..|
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 568999999999999999986543 456665443
No 93
>PLN02960 alpha-amylase
Probab=69.69 E-value=8.3 Score=48.24 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~t-Yvf-------Wn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+++|.-+|++|+|+|+. .|+ |.+.--- .=.-.|....||.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999998 343 3321100 001124456799999999999999999985
No 94
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=69.03 E-value=14 Score=41.23 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=58.1
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eeecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003649 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (805)
Q Consensus 46 ~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~-ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAE 124 (805)
++=||.+.|.+.+.=...|++|...|+.-|=| ++|.|.+.. =-|. -+.++++.|++.||+||+-+-|=|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55678888999888889999999999988877 999998741 1122 577889999999999999987766544
No 95
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=68.84 E-value=17 Score=41.67 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=43.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.+.|+.+|+.+|++||+.... |+.-+. .+.. ..|...++.|++.|+++++-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 8899999999999999999999 665222 2322 378888999999999999986
No 96
>PRK09505 malS alpha-amylase; Reviewed
Probab=68.34 E-value=9.1 Score=46.99 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC----Cc------------------eeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 60 WEDLIRKAKDGGLDVIDT-YVFWNGHEPS----PG------------------HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~----~G------------------~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.+|++.|++.||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999986 5554443221 11 112445679999999999999999988
Q ss_pred c
Q 003649 117 I 117 (805)
Q Consensus 117 ~ 117 (805)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 97
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=67.78 E-value=9.1 Score=46.30 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCCCC-----CCCceee----ec--ccchHHHHHHHHHHcCCEEE
Q 003649 62 DLIRKAKDGGLDVIDT-YVF---------------WNGHE-----PSPGHYN----FE--GSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~t-Yvf---------------Wn~hE-----p~~G~yd----F~--G~~dl~~fl~la~~~GL~Vi 114 (805)
+.|.-+|++|+|+|+. .|+ |.++- |.+ .|- |- ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4588999999999998 443 32221 100 010 10 12689999999999999999
Q ss_pred Ecc
Q 003649 115 LRI 117 (805)
Q Consensus 115 lR~ 117 (805)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 98
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=67.48 E-value=10 Score=45.34 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHCCCCEEEE-cccCCCCCCCC-cee----------eecccchHHHHHHHHHHcCCEEEEcc
Q 003649 58 EMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSP-GHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~~-G~y----------dF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.-+.++|.-+|++|+++|-+ .++-. |.. .-| +|....||.+|++.|+++||+|||-.
T Consensus 33 ~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 33 RGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34668899999999999987 44421 111 122 24455799999999999999999864
No 99
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.13 E-value=14 Score=40.61 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=48.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
.+.+..++.++++|+.|+.+=...+=..++... -+.|.|+-. -|..++++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 377888999999999995553333332223221 235666533 38999999999999999999878775
No 100
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=66.68 E-value=2 Score=45.36 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
-...+++.++|.+.|.+.++|..-.+..-.+..+ ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4578899999999999999996655544344444 8999999999999999999
No 101
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.97 E-value=1.8 Score=51.82 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=33.2
Q ss_pred cCCCCeEEEEEeeeeCCCcccccCcccccccCCCccc
Q 003649 766 CAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHA 802 (805)
Q Consensus 766 C~~g~~Is~i~FASfG~p~G~Cg~f~~g~c~a~~s~~ 802 (805)
|.++.+++.|.+|+||+.+|+|+.|..+.|.++++..
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v 368 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPV 368 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCcc
Confidence 5569999999999999999999999999998887654
No 102
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.91 E-value=12 Score=45.36 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--CCCCCCcee-----eecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDT-YVFWN--GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~t-YvfWn--~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+.|.-+|++|+|+|-. .||=+ .|---...| .|-+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788899999999998 56522 121111111 24456799999999999999999864
No 103
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=65.48 E-value=9.8 Score=44.91 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCC---ceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSP---GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~---G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
.++++++.||++|+++-+.-|-|+..=|.- +.-+-+|..-...+|+...++|+..++-. -+=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 488999999999999999999999987753 56888888888899999999999866553 1334898887
Q ss_pred c-cCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003649 136 Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (805)
Q Consensus 136 ~-~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~ 180 (805)
+ ..+-.-+..=+.|+++++--|++..+++| ....=|-..|+.+
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~ 207 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSI 207 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeee
Confidence 6 44433333345688888888888888888 4433344454444
No 104
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.29 E-value=54 Score=36.10 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=54.0
Q ss_pred CCCCHhHHHHHHHHHHHCCC--CEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccccc
Q 003649 53 PRSTPEMWEDLIRKAKDGGL--DVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~Gl--N~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYicAE 124 (805)
...+.+.-.+.++++++.|+ ++|-.=..| ...-|.|.|.-. -|..++++..++.|+++++..=|||+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 45688889999999999995 466554445 334566666533 4899999999999999999999999864
No 105
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.34 E-value=24 Score=29.47 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=43.7
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999842 333 58877766 5778999999999988754
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.02 E-value=9.9 Score=45.28 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=41.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCC-Cceee----------ecccchHHHHHHHHHHcCCEEEEc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPS-PGHYN----------FEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~t-YvfWn~hEp~-~G~yd----------F~G~~dl~~fl~la~~~GL~VilR 116 (805)
.-.-+.+.|.-+|++|+|+|-. .|| .. +. ..-|| |.+..|+.+|++.|++.||+|||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3445778899999999999987 343 11 11 11121 445579999999999999999985
No 107
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.16 E-value=86 Score=34.35 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=49.8
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC--------CCceeeeccc--chHHHHHHHHHHcCCEEEEc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--------SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp--------~~G~ydF~G~--~dl~~fl~la~~~GL~VilR 116 (805)
+|..|. +.+.-++.++++|+.||-+=-+++=...|.- .-+.|.|+-. -|..++++..++.|++|++-
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444452 6777899999999999876555443333321 2356777643 49999999999999999987
Q ss_pred cCcc
Q 003649 117 IGPY 120 (805)
Q Consensus 117 ~GPY 120 (805)
+=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 6443
No 108
>PRK12677 xylose isomerase; Provisional
Probab=61.91 E-value=1.2e+02 Score=34.88 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec---ccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEe
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~---G~~dl~~fl~la~~~GL~Vi-lR~GPYicAEw~~GGlP~WL 134 (805)
-+++.++++++.|+..|+.- .+..--|+.+ -...+.++.+++++.||.|. +-+.-|.+..+..|+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~----- 100 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA----- 100 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc-----
Confidence 37789999999999999882 1111112221 11358899999999999976 444322111222222
Q ss_pred cccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 135 ~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 -------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 -------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567666665555555555555
No 109
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=60.59 E-value=13 Score=33.07 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=33.0
Q ss_pred eeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccc-cCCCCeEEEEEecCCcc
Q 003649 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIALLSIAVGLP 551 (805)
Q Consensus 495 ~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l-~~G~n~L~lLven~Gr~ 551 (805)
.|++.+-...++-||||+++|...... .+.+ .+ ..|.++|.+ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 455555566999999999998865432 2222 34 678888887 5666653
No 110
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.82 E-value=14 Score=48.44 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccCCCCCCC---Cc--e---ee----------ec--ccchHHHHHHHHHHcCCEEEEcc
Q 003649 62 DLIRKAKDGGLDVIDT-YVFWNGHEPS---PG--H---YN----------FE--GSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~t-YvfWn~hEp~---~G--~---yd----------F~--G~~dl~~fl~la~~~GL~VilR~ 117 (805)
..|.-+|++|+|+|+. .||=+..|.. .| . || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999998 5552222211 11 0 22 23 66799999999999999999974
No 111
>PLN02361 alpha-amylase
Probab=58.13 E-value=21 Score=41.18 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCC---CCCCCce-ee----ecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNG---HEPSPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~---hEp~~G~-yd----F~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+.|.-+|++|+++|-+.=+... |--.+.. |+ |-...+|.++|+.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 34566679999999988533322 2112222 22 3445799999999999999999865
No 112
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=57.92 E-value=1.7e+02 Score=31.39 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=49.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--eeccc--chHHHHHHHHHHcCCEEEEccCccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGS--YDLVRFIKTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~y--dF~G~--~dl~~fl~la~~~GL~VilR~GPYi 121 (805)
+.+...+.++.+++.|+-.=...+=+...+. .+.| +|+-. -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 7788899999999999875555444444433 4566 55432 4899999999999999999998888
No 113
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=57.52 E-value=9.7 Score=32.33 Aligned_cols=39 Identities=26% Similarity=0.584 Sum_probs=26.6
Q ss_pred eeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEE
Q 003649 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIAL 543 (805)
Q Consensus 495 ~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~l 543 (805)
.|.|.+.-.-|.|||||+++|... ..+. .+..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 577777777789999999999432 1221 25677766655
No 114
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=57.35 E-value=47 Score=41.05 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCC---CCCc-----eee----------ec---ccchHHHHHHHHHHcCCEEEEcc
Q 003649 63 LIRKAKDGGLDVIDT-YVFWNGHE---PSPG-----HYN----------FE---GSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~t-YvfWn~hE---p~~G-----~yd----------F~---G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.|.-+|++|+|+|+. .||=...+ ...| -|| |. ...+|.+|++.|++.||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999997 45411111 1111 011 11 24689999999999999999974
No 115
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.22 E-value=1.2e+02 Score=34.17 Aligned_cols=74 Identities=11% Similarity=0.180 Sum_probs=55.5
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccc--hH--HHHHHHHHHcCCEEEEccCcccc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY--DL--VRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~--dl--~~fl~la~~~GL~VilR~GPYic 122 (805)
+|..|. +.+..++.++++++.||..=...+=+.++. ..+.|.|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 678889999999999987655444333333 24677776543 77 99999999999999999999998
Q ss_pred cc
Q 003649 123 AE 124 (805)
Q Consensus 123 AE 124 (805)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 64
No 116
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=54.97 E-value=29 Score=39.14 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHcCCCCcceEecCCCC---CCcc-----cccC--CCCCcc-------CC---------C-CCCCCCCC
Q 003649 197 GHAYVNWAAKMAVGLDTGVPWVMCKEDD---APDP-----VINS--CNGFYC-------DA---------F-SPNKPYKP 249 (805)
Q Consensus 197 ~~~Y~~~l~~~~~~~g~~vP~~~~~~~~---~p~~-----vi~t--~ng~~~-------~~---------~-~~~~p~~P 249 (805)
-.+|++++++.+++...+.|+.++--.. ..+. .++. ++.+.. .. + +...+++|
T Consensus 211 ~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kp 290 (374)
T PF02449_consen 211 VAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKP 290 (374)
T ss_dssp HHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCc
Confidence 4568888899999888888776443211 1110 0110 010000 00 0 12257899
Q ss_pred ccccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCch
Q 003649 250 TLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQP 329 (805)
Q Consensus 250 ~~~tE~w~Gwf~~wG~~~~~r~~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~p 329 (805)
.+++|..+| -..|+.......++.+....-.-++.|+..+.|+=+ ..--+|.=.. ..+-|+-+|...++
T Consensus 291 f~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~ 359 (374)
T PF02449_consen 291 FWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTR 359 (374)
T ss_dssp EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-H
T ss_pred eEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCc
Confidence 999999999 666766555556677766666778999998877654 3333342211 13568888933479
Q ss_pred hHHHHHHHHHHHHh
Q 003649 330 KYGHLKQLHEAIKL 343 (805)
Q Consensus 330 Ky~~lr~l~~~i~~ 343 (805)
+|.+++++.+.|+.
T Consensus 360 ~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 360 RYREVAQLGRELKK 373 (374)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887763
No 117
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=54.96 E-value=26 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCC-----CCCCC-----ceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNG-----HEPSP-----GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~-----hEp~~-----G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
+-+-+.+.|.-++++|+++|..-=++.. |--.. =.-.|.+..||.+|++.|+++||.|||-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5667899999999999999977322221 11000 0112457889999999999999999988644
No 118
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=54.52 E-value=64 Score=39.72 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEE---------------cccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDT---------------YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~t---------------YvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYi 121 (805)
.+.-...|+.+|++|+|||-. |.+| -|=|. +-|.= |-. ...++.+.|+.|..+..||-
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~--r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPM--RADLF---NRV-AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccccc--ccCCc---CHH-HHHHHHhhCCEEEEecccee
Confidence 355778999999999999954 5556 33332 22211 111 34568899999999999985
Q ss_pred cc---------ccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccccc
Q 003649 122 CA---------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY 186 (805)
Q Consensus 122 cA---------Ew~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEy 186 (805)
.. +++..+-|...+ |+--.| =.+|..++++|++.|..-|+++ .+|=++|...+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 222222222221 110122 2457788999999998888743 256566665553
No 119
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.94 E-value=79 Score=34.89 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=47.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCCCC-CC--CceeeecccchHHHHHHHHHHcCCEEEEccCccccccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE-PS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEW 125 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvf----Wn~hE-p~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw 125 (805)
+.+.-.+.|+.|...|+|++..|+- +.-+. .. +|.|. ..|+.++++.|++.|+-||-.+==.-+.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 5688899999999999999998753 32221 11 23332 359999999999999999977543334443
No 120
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.51 E-value=39 Score=28.23 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
.++.++++|+.|+++|-+ .-|.. +. ...+|.+++++.||.||.
T Consensus 17 ~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEE
Confidence 568999999999999988 55542 22 456888999999998764
No 121
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=52.44 E-value=1.8e+02 Score=33.59 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=58.8
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeeeccc---chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGS---YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 50 iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~----G~ydF~G~---~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
-.|+.++.+.-.+.+++||++|++.+.+=--|....... |.+--+-. .-|..+++.+++.||..=|+..|.+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456778889999999999999998776655586542222 33322211 24899999999999999888888765
Q ss_pred cccC--CCCCCeEecccCC
Q 003649 123 AEWN--FGGFPVWLKYVPG 139 (805)
Q Consensus 123 AEw~--~GGlP~WL~~~p~ 139 (805)
++=. +-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 3211 2347999987654
No 122
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=51.99 E-value=29 Score=38.30 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=40.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccC---CCCCCCCceeee-cc----cchHHHHHHHHHHcCCEEEEcc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFW---NGHEPSPGHYNF-EG----SYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfW---n~hEp~~G~ydF-~G----~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+..-..+++.+|+.|+|++-.=+== ++.-|....+.= .+ -.|+.-||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 45556789999999999998552210 111122211110 00 1499999999999999999997
No 123
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=51.07 E-value=28 Score=31.09 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=24.3
Q ss_pred cCCceEEeccccc-cCCCcccC----Cc-chHHHHHHHHHH---HHcCCCCcceEe
Q 003649 173 QGGPIILSQIENE-YGPESKSL----GA-AGHAYVNWAAKM---AVGLDTGVPWVM 219 (805)
Q Consensus 173 ~GGpII~~QIENE-yg~~~~~~----~~-~~~~Y~~~l~~~---~~~~g~~vP~~~ 219 (805)
+..-|.+|+|-|| -++....+ +. ....|.+||+++ +|+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 45221111 11 234455555555 567788888644
No 124
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=50.95 E-value=2.4e+02 Score=31.63 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=27.2
Q ss_pred ecCcEEECCEEeEEEEEEecCCCC-CHhHHHHHH-HHHHHCCCCEEEE
Q 003649 32 DRKAILINGQRRILISGSIHYPRS-TPEMWEDLI-RKAKDGGLDVIDT 77 (805)
Q Consensus 32 d~~~f~idGk~~~l~sG~iHy~R~-~~e~W~~~l-~k~Ka~GlN~V~t 77 (805)
|.+.+.|||||+++|=.. .-+ ....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p---~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRP---GDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECc---ccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 779999999999987333 222 122222333 5678899885443
No 125
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=50.90 E-value=1.6e+02 Score=31.02 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred CHhHHHHHHHHHHHCCCCE-EEE--cccCCCCCC----CCc-eeeecc-------------cchHHHHHHHHHHcCCEEE
Q 003649 56 TPEMWEDLIRKAKDGGLDV-IDT--YVFWNGHEP----SPG-HYNFEG-------------SYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~-V~t--YvfWn~hEp----~~G-~ydF~G-------------~~dl~~fl~la~~~GL~Vi 114 (805)
-++.-.+.++++|+.|+.+ |+| |+.|..-+. ... -+|+.+ +..+.+.|+.+.+.|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566778999999999863 555 333311111 111 233322 2345566777888888888
Q ss_pred EccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccc----------
Q 003649 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN---------- 184 (805)
Q Consensus 115 lR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIEN---------- 184 (805)
+|. |. +|++ ++++.-++++-+|+..+ . +. +|-+..--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l-~-~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPL-G-IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHc-C-Cc----------eEEEecCCccchhHHHHcC
Confidence 885 21 3554 34566556655555443 0 11 222221111
Q ss_pred -ccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 185 -EYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 185 -Eyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
+|-.. ......++.|+++++++++.|+.+
T Consensus 180 ~~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22210 123467889999999999988876
No 126
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=50.69 E-value=19 Score=36.38 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=30.9
Q ss_pred EEeeCCCceEEEEECCeeeeeeeeccccCCCcccccCCCcCCccccCCCCCCceeeeec---CcccccCCccEEEEE
Q 003649 639 ALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHV---PRSWLKPTKNLLVVF 712 (805)
Q Consensus 639 ~Ldl~g~gKG~vwVNG~niGRYWp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhV---P~~wLk~g~N~LVvf 712 (805)
.|..++.|+=.+||||+.+|+-- +..|+. .| + .++|.. =.++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~--l~P~~t-------~y-----------~-~~~~Y~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP--LAPGWT-------DY-----------D-KRVYYQTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-----------------B-----------T-TEEEEEEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCc--cccccc-------cC-----------C-CceEEEEEeChHHhCCCCCEEEEE
Confidence 57778889999999999999753 111110 11 2 222212 267899999998873
No 127
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.13 E-value=25 Score=43.10 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=36.6
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----eee----------ecc-----cchHHHHHHHHHHcCCEEEEcc
Q 003649 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----HYN----------FEG-----SYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~t-YvfWn~hEp~~---G-----~yd----------F~G-----~~dl~~fl~la~~~GL~VilR~ 117 (805)
.|.-+|++|+|+|+. .||=...++.. | -|| |.. ..+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999987 44411111110 1 011 222 1479999999999999999874
No 128
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.60 E-value=21 Score=38.26 Aligned_cols=125 Identities=18% Similarity=0.362 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEe
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G--~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL 134 (805)
.-.|+++|.-+|++||+-|+. +..|.-+. .-||+. .-...+.+++++.|+ |+ |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------h
Confidence 345999999999999999999 77887554 677773 234567888999998 32 2222 1
Q ss_pred cccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc----chHHH---HHHHHHH
Q 003649 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA----AGHAY---VNWAAKM 207 (805)
Q Consensus 135 ~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~----~~~~Y---~~~l~~~ 207 (805)
..+-...|-+.|+.-.+.....+.+-...-. +| -|=-+|+- -|.-| |.+ ..+.+ |+|..++
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHHH
Confidence 1111122567898888877777776655444 33 35556762 23322 332 23334 4566666
Q ss_pred HHcCCCC
Q 003649 208 AVGLDTG 214 (805)
Q Consensus 208 ~~~~g~~ 214 (805)
|.++.+.
T Consensus 144 A~~aqV~ 150 (287)
T COG3623 144 AARAQVM 150 (287)
T ss_pred HHhhccE
Confidence 6665543
No 129
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=49.42 E-value=35 Score=45.92 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=47.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce---e----------eecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH---Y----------NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~---y----------dF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
-+-+-|.+.|.-+|++|+|+|-.-=++ +..+|. | .|.+..||.+|++.|+++||.|||-.=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 377889999999999999999874222 222221 2 2457789999999999999999987644
No 130
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=48.49 E-value=38 Score=42.80 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce---e---e-------ecccchHHHHHHHHHHcCCEEEEccCcc
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH---Y---N-------FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~---y---d-------F~G~~dl~~fl~la~~~GL~VilR~GPY 120 (805)
.+-+-+.++|.-++++|+|+|-.-=+. +..+|. | | |.+..++.+|++.|+++||.|||-+=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 456779999999999999999873222 222221 1 2 4467899999999999999999987553
No 131
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=47.55 E-value=67 Score=35.20 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=66.9
Q ss_pred EEEEEEecCCCC---CHhHH-HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 44 ILISGSIHYPRS---TPEMW-EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 44 ~l~sG~iHy~R~---~~e~W-~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
+.+++..|+..- +.... -++|++--++|.+-+-|=.| ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 567888877542 22222 23444434699999999433 3333 7789999999997765445555
Q ss_pred ccc---------cccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 120 YVC---------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 120 Yic---------AEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
..+ +||..--+|.||.+.=. ....+++...+.--++..++++.++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 67887778999986110 0112334445566667777777776
No 132
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.96 E-value=1.2e+02 Score=30.17 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEccc--CCCCCC----CCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCC
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVF--WNGHEP----SPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGF 130 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvf--Wn~hEp----~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYicAEw~~GGl 130 (805)
+.-++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +-+|. ++.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~-----~~~--- 97 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR-----YPS--- 97 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----ESS---
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----ccc---
Confidence 45667888899999996665444 433211 1111 11223588999999999998854 55442 000
Q ss_pred CeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCC
Q 003649 131 PVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPE 189 (805)
Q Consensus 131 P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~ 189 (805)
. -....+.-.+.+.+.+++++++.+++ | |.+.+||..+..
T Consensus 98 -----~-----~~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 98 -----G-----PEDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGPF 137 (213)
T ss_dssp -----S-----TTSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSSS
T ss_pred -----c-----cCCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCcc
Confidence 0 01123456677777888888888743 2 456789988764
No 133
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=46.58 E-value=59 Score=36.69 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=58.5
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecc--cchHHHHHHHHHHcCC
Q 003649 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVGL 111 (805)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~-~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G--~~dl~~fl~la~~~GL 111 (805)
.+.+.|.++.++.| +=-+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 47777888888888 2222 57777788889999999999999984 3333367775 5677778888999999
Q ss_pred EEEEcc
Q 003649 112 YAHLRI 117 (805)
Q Consensus 112 ~VilR~ 117 (805)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 998876
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.57 E-value=90 Score=33.22 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=47.5
Q ss_pred Cceeeec-ccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 88 PGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 88 ~G~ydF~-G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
.|...+. +..++..+++.|++.|++|++.+|= |..+.+-. +. .|+. ..++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~~---------~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-AL---------NDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-hh---------cCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999999861 22211100 11 2322 346789999999986
Q ss_pred cccccccCCceEEeccccccCC
Q 003649 167 EKLFASQGGPIILSQIENEYGP 188 (805)
Q Consensus 167 ~~l~~~~GGpII~~QIENEyg~ 188 (805)
+++ =++.|+=|+..
T Consensus 98 ~~~--------DGIdiDwE~~~ 111 (253)
T cd06545 98 YNL--------DGIDVDLEGPD 111 (253)
T ss_pred hCC--------CceeEEeeccC
Confidence 543 24556667753
No 135
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=45.14 E-value=43 Score=37.75 Aligned_cols=114 Identities=20% Similarity=0.294 Sum_probs=66.3
Q ss_pred EEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHH
Q 003649 74 VIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAM 153 (805)
Q Consensus 74 ~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~ 153 (805)
.|.+.|.|+++--+. ==...|+.|+++|+.|+-- |.-||+ +-+.|+.. .++. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----lL~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----FLKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----Hhcc-Cc---ccc
Confidence 377888999854221 0026799999999999753 244676 33456543 1221 11 224
Q ss_pred HHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCC--CCcceE
Q 003649 154 QGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLD--TGVPWV 218 (805)
Q Consensus 154 ~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g--~~vP~~ 218 (805)
.++.++|+++.+.+.+ .| +.+-+|+..+... ..+.-.++++.|++.+++.+ ..|-|+
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 5788889998885543 23 7788888873110 11234456666667666542 334454
No 136
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=44.19 E-value=49 Score=36.69 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccc--hHHHHHHHHHHcCCEEEEccCcccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G--~ydF~G~~--dl~~fl~la~~~GL~VilR~GPYic 122 (805)
+.+.-++.++++++.||-+=.+.+=|.+.. ..+ .|+|+-.+ |..+||+..++.|++|++-.=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 677788999999999876644444344333 344 77776543 9999999999999999988767763
No 137
>PLN00196 alpha-amylase; Provisional
Probab=43.90 E-value=48 Score=38.55 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCC--CCCCCce-eee-----cccchHHHHHHHHHHcCCEEEEccC
Q 003649 61 EDLIRKAKDGGLDVIDTY-VFWNG--HEPSPGH-YNF-----EGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tY-vfWn~--hEp~~G~-ydF-----~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
.+.|.-+|++|+++|-.- ++=+. |--.+.. |+. -...+|.++++.|++.||.||+-.=
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 467788899999999884 33221 2222221 333 3346999999999999999998753
No 138
>PLN03059 beta-galactosidase; Provisional
Probab=43.36 E-value=42 Score=42.11 Aligned_cols=40 Identities=28% Similarity=0.627 Sum_probs=29.9
Q ss_pred EEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEE
Q 003649 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAF 518 (805)
Q Consensus 472 YlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~ 518 (805)
..||+++|+++..+ ....|.+.+++-- +|||||+-+|.-.
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGKG-~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGKG-QIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCCe-eEEECCccccccc
Confidence 89999999875322 1146777776654 7999999999876
No 139
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=42.59 E-value=67 Score=35.48 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCc--------ccccccCCCCCCe
Q 003649 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGP--------YVCAEWNFGGFPV 132 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GP--------YicAEw~~GGlP~ 132 (805)
+|++-.++|.+.+.|=.| ||.+ .+.+|++.|++.| +.|+.-+-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666789999888333 3444 7889999999999 455666556 34 6778888999
Q ss_pred EecccCCeeeecCC-hhhHHHHHHHHHHHHHHHH
Q 003649 133 WLKYVPGISFRTDN-GPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 133 WL~~~p~~~~Rt~~-~~y~~~~~~~~~~i~~~i~ 165 (805)
||.+.=. +. .+| +..+++--++..++++.+.
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9975211 01 133 3345555567777777666
No 140
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.99 E-value=55 Score=36.63 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=53.8
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccccc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYicAE 124 (805)
+|..|. +.+.-++.++++++.||.+=...+=+.+ ....+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344443 6777889999999999865544433222 234566777644 2899999999999999999998888753
No 141
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.78 E-value=49 Score=32.29 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHcCCEEEEccCcccccccC-CCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCC
Q 003649 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN-FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGG 175 (805)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~GPYicAEw~-~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GG 175 (805)
.||..||++|++.|+.|++=+-| |++.|- +-|+| ++..+.++++|-.+++ ++|-
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~------~~gf 90 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLK------SQGF 90 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHH------TTT-
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHH------HCCC
Confidence 49999999999999998766544 555553 11211 3556778889888888 4566
Q ss_pred ceEE
Q 003649 176 PIIL 179 (805)
Q Consensus 176 pII~ 179 (805)
+|+=
T Consensus 91 ~v~D 94 (130)
T PF04914_consen 91 NVAD 94 (130)
T ss_dssp -EEE
T ss_pred EEEe
Confidence 6653
No 142
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.46 E-value=63 Score=35.83 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=48.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCC--C---CCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--P---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE--p---~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
..+...+.++++|+.||-+=...+=+..+. . .-|.|+|+-. -|..++++..+++|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 577789999999999986544444322232 1 2356776543 38999999999999999998877774
No 143
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=41.46 E-value=36 Score=37.04 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=38.8
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEE
Q 003649 467 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAF 518 (805)
Q Consensus 467 ~d~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~ 518 (805)
+|-.|.+||+.++.+..+. +...++...|++.+++-.|.|+|||.-+=...
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~ 134 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHE 134 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeecccc
Confidence 5678999999999887544 12234456899999999999999997664433
No 144
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=41.30 E-value=48 Score=43.04 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003649 97 YDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (805)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999985
No 145
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.76 E-value=87 Score=34.36 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecc---cchHHHHHHHHHHcCCEEEEccCcccccccCCCCCC
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG---SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFP 131 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G---~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP 131 (805)
.+-+..+.-+..+.++|+.-|-+=..|...+ ....+||+. ..||.++++-|++.|.-|+|.- + |..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhh
Confidence 4778889999999999999988877787722 234677753 4799999999999998888874 2 3332211
Q ss_pred eEecc-------------cCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceE
Q 003649 132 VWLKY-------------VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (805)
Q Consensus 132 ~WL~~-------------~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII 178 (805)
.=|.+ +.|+++---+. --+.+-+|+.+|++.-++++|+..=+|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11111 23343211111 125677899999999999998777776654
No 146
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=39.51 E-value=95 Score=37.79 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=74.5
Q ss_pred EEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcc
Q 003649 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (805)
Q Consensus 41 k~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPY 120 (805)
++-+.+++..|+.+.+.+.=-++|.+-.++|.+-+-|=.|++. + .+.+|++.+++.++.+|.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557899999877666555445677777899999999655543 3 77888888887888888888773
Q ss_pred --------cccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 121 --------VCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 121 --------icAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+..+|..-=+|.|+.+.=. ... +...++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 3334555567888875110 011 224566666677777777666
No 147
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.46 E-value=43 Score=35.63 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeeecccchHHHHHHHHHHcCCEEEEcc-Ccc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGSYDLVRFIKTVQRVGLYAHLRI-GPY 120 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~----G~ydF~G~~dl~~fl~la~~~GL~VilR~-GPY 120 (805)
+.+++.|+.++++|..+|.+ |..|.... -.+... ...|.++.++|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 35667889999999999966 32232211 112211 1368899999999999999997 444
No 148
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=39.28 E-value=54 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|+++
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 44699999988887 777776 5444 69999999999999999987
No 149
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=37.42 E-value=6.1e+02 Score=29.18 Aligned_cols=86 Identities=12% Similarity=0.198 Sum_probs=52.2
Q ss_pred HHHcCCEEEEccCcccccccCCCCCCeEecccCCe------eee-cCChhhHHHHHHHHHHHHHHHHccccccccCCceE
Q 003649 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI------SFR-TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (805)
Q Consensus 106 a~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~------~~R-t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII 178 (805)
+-..|+.|+.-| |+ .|+|+...-.+ ++| ...+.|-++..+|+ ..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv----~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFV----LEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHH----HHHH------hCCCcee
Confidence 667899999988 86 79999863221 233 22344444444443 3445 4677998
Q ss_pred EeccccccCCCcccCCc---chHHHHHHHHHHHHcCC
Q 003649 179 LSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (805)
Q Consensus 179 ~~QIENEyg~~~~~~~~---~~~~Y~~~l~~~~~~~g 212 (805)
++.+.||-.... .|+. .-.+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999975432 1222 23456666777666554
No 150
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=37.26 E-value=65 Score=36.09 Aligned_cols=118 Identities=20% Similarity=0.398 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE-EEccCcccccccCCCCCCeEec
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V-ilR~GPYicAEw~~GGlP~WL~ 135 (805)
.-.|+.--.-.+.+|+-+|.+|-+|+..+-.= |++.||.-.+.+--+. |+-. .||-=..|=
T Consensus 132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm------ 193 (410)
T KOG1412|consen 132 NPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEGSIIILH---ACAHNPTGM------ 193 (410)
T ss_pred CCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCCcEEeee---ccccCCCCC------
Confidence 34599999999999999999999999855433 7779999888876553 2322 265444332
Q ss_pred ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 136 ~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
+| .+.=+..|++.||+..|+ |.. +=-|..+ +.|+.++ =.|......+.| .
T Consensus 194 -DP--------------T~EQW~qia~vik~k~lf-----~fF----DiAYQGf--ASGD~~~--DawAiR~fV~~g--~ 243 (410)
T KOG1412|consen 194 -DP--------------TREQWKQIADVIKSKNLF-----PFF----DIAYQGF--ASGDLDA--DAWAIRYFVEQG--F 243 (410)
T ss_pred -CC--------------CHHHHHHHHHHHHhcCce-----eee----ehhhccc--ccCCccc--cHHHHHHHHhcC--C
Confidence 12 223345677788866554 221 1122211 1232222 357777777777 4
Q ss_pred ceEecCC
Q 003649 216 PWVMCKE 222 (805)
Q Consensus 216 P~~~~~~ 222 (805)
+++.|+.
T Consensus 244 e~fv~QS 250 (410)
T KOG1412|consen 244 ELFVCQS 250 (410)
T ss_pred eEEEEhh
Confidence 6788873
No 151
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=37.04 E-value=56 Score=41.51 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003649 97 YDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (805)
.++.++++.|++.||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 152
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=36.91 E-value=1.2e+02 Score=33.86 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEec-CCCCCHhH---HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHH
Q 003649 26 CSTVTYDRKAILINGQRRILISGSIH-YPRSTPEM---WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVR 101 (805)
Q Consensus 26 ~~~v~~d~~~f~idGk~~~l~sG~iH-y~R~~~e~---W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~ 101 (805)
...|++-+..+.+|. .= +-+.++ -+-...+. -...+...++.|.+||=.--. + .=-||..+
T Consensus 15 ~lGvTl~HEHl~~~~--~~-~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~-------~-----~~GRdv~~ 79 (316)
T COG1735 15 DLGVTLMHEHLFIDP--YE-IAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATN-------I-----GIGRDVLK 79 (316)
T ss_pred Hccceeehhhhccch--HH-HhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCc-------c-----ccCcCHHH
Confidence 345677777777775 11 112222 12221111 233556667778888754211 0 11269999
Q ss_pred HHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec
Q 003649 102 FIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (805)
Q Consensus 102 fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~Q 181 (805)
..+.+++.||.++.-.|+|.-+.|+ .|+...| ++.+.+.+++.+++ .=.|+=|..=
T Consensus 80 m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-----Gi~gT~ikAG 135 (316)
T COG1735 80 MRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-----GIAGTGIKAG 135 (316)
T ss_pred HHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-----cccCCccccc
Confidence 9999999999999999999988886 6665433 55566666666651 1113333333
Q ss_pred cccccCCCcccCCcchHHHHHHHHHHHHcC-CCCcceEecCC
Q 003649 182 IENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCKE 222 (805)
Q Consensus 182 IENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~~ 222 (805)
|=-|-|.+.. +.+ .=.+.|+..|++. .+++|+.+-.+
T Consensus 136 iIk~~~~~~~-iTp---~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 136 IIKEAGGSPA-ITP---LEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeeccCccc-CCH---HHHHHHHHHHHHhhhcCCCeEEecc
Confidence 3345554321 222 2234444444432 46789876553
No 153
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=36.35 E-value=43 Score=38.57 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEE-cccC---CCCCCCCc---ee--eecccchHHHHHHHHHHcCCEEEEcc
Q 003649 62 DLIRKAKDGGLDVIDT-YVFW---NGHEPSPG---HY--NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~t-YvfW---n~hEp~~G---~y--dF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.|.-+|++|+++|-+ .++= ..|--..- +. .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6888899999999955 2221 11111100 00 57778899999999999999999764
No 154
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=36.24 E-value=40 Score=37.59 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=37.8
Q ss_pred EEEEEEec------CCCCCHhHHHHHHHHHHHC-CCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003649 44 ILISGSIH------YPRSTPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (805)
Q Consensus 44 ~l~sG~iH------y~R~~~e~W~~~l~k~Ka~-GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (805)
++.||. | +.+++.+-|++..++--.. |+|-+|-| |..-++.. ....++|++|++.|-|.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceE
Confidence 446777 8 4556777778777777665 99988885 55544433 37789999999999988
No 155
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=36.24 E-value=76 Score=35.20 Aligned_cols=72 Identities=8% Similarity=0.095 Sum_probs=51.9
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
+|..|. ..+..++.++++++.++-.=...+=+... ...+.|+|+.. -|..+|++..++.|++|++-.=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM-DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhh-CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 445554 67788999999999998654443332222 23466777644 48999999999999999998877775
No 156
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=35.57 E-value=14 Score=32.86 Aligned_cols=39 Identities=21% Similarity=0.571 Sum_probs=29.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCC
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGL 111 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL 111 (805)
.+..|-.-+|.+.. -||.|..|||. +|.+||++|-|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 56779888888754 48999999999 99999999987544
No 157
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.20 E-value=1e+02 Score=34.17 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCC---CCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEP---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp---~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
.+.-.+.++++++.|+-+=-+.+=+.+..- ....|+|.-. -|..++++..+++|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 566788999999999866554443222211 1234666433 38999999999999999999888874
No 158
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=34.64 E-value=88 Score=38.31 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-cc-----CC--CCCCCCceeeec---------ccchHHHHHHHHHHcCCEEEEccC
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTY-VF-----WN--GHEPSPGHYNFE---------GSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tY-vf-----Wn--~hEp~~G~ydF~---------G~~dl~~fl~la~~~GL~VilR~G 118 (805)
.+.+|+ .+|++|+++|=+- ++ |. .-.-..|-||-+ ...|++++++.|++.||.||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566775 5788999999772 22 32 222234566633 336999999999999999997643
Q ss_pred --------cccccccCCCCCCeEec
Q 003649 119 --------PYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 119 --------PYicAEw~~GGlP~WL~ 135 (805)
||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 38889999998998884
No 159
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.48 E-value=2.1e+02 Score=32.22 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=55.1
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYic 122 (805)
+|..|. +.+..++.++++++.+|-.=..++=|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 788889999999999986554544455443 3466777654 38899999999999999998889887
No 160
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=34.31 E-value=74 Score=34.21 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
..++|++|++.|-. +|-|.+. -|. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~-~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERRQ-YFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 44699999988887 6666553 222 3467899999999999999999987
No 161
>PRK09267 flavodoxin FldA; Validated
Probab=33.90 E-value=2.7e+02 Score=27.48 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=48.9
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003649 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (805)
++.-..++++...|....+|..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556789999999878888899998988887777777777773 21111100111 1235667777888897654
No 162
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.68 E-value=65 Score=34.35 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 5578899999999999998631100011111 00110 01367888999999999999987
No 163
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.60 E-value=92 Score=34.82 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=51.4
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCccccc
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYicA 123 (805)
+|..|. +.+..++.++++++.|+-.=...+=+.+. ..-+.|+|+-. -|..+|++..++.|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYM-DGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhh-CCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 67778999999999998653333333322 23455666543 378999999999999999988777753
No 164
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.48 E-value=99 Score=33.63 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=41.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--ee-cccchHHHHHHHHHHc-CCEEEEccCc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NF-EGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~y--dF-~G~~dl~~fl~la~~~-GL~VilR~GP 119 (805)
.++.|.+..++++++|++.|+. |++-|..... .+ ...+.+.++++.+++. ++-|+++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5789999999999999999999 6666653221 11 1124566777777776 6666666543
No 165
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=33.41 E-value=3.1e+02 Score=28.86 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc-eeeec-ccchHHHHHHHHHHcCCEEEEccCcccccccCCC-CCCeEeccc
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG-HYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-GFPVWLKYV 137 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G-~ydF~-G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~G-GlP~WL~~~ 137 (805)
++.++.|+++|+|++.+ | .-.|+ |..-|.+.++.++++|+ ||+++--+.. ..|.-+.+.
T Consensus 63 ~~~~~~l~~~G~d~~~l-----------aNNH~fD~G~~gl~~t~~~l~~a~i-------~~~g~~~~~~~~~~~~i~~~ 124 (239)
T smart00854 63 PENAAALKAAGFDVVSL-----------ANNHSLDYGEEGLLDTLAALDAAGI-------AHVGAGRNLAEARKPAIVEV 124 (239)
T ss_pred HHHHHHHHHhCCCEEEe-----------ccCcccccchHHHHHHHHHHHHCCC-------CEeeCCCChHHhhCcEEEEE
Q ss_pred CCee----------------------eecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc
Q 003649 138 PGIS----------------------FRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA 195 (805)
Q Consensus 138 p~~~----------------------~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~ 195 (805)
.+++ +...++...+.++++++++-+. . .+ =|++.+...||..
T Consensus 125 ~g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~--D~------vIv~~H~G~e~~~------- 188 (239)
T smart00854 125 KGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKK-A--DV------VIVSLHWGVEYQY------- 188 (239)
T ss_pred CCEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-C--CE------EEEEecCccccCC-------
Q ss_pred chHHHHHHHHHHHHcCCCCc
Q 003649 196 AGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 196 ~~~~Y~~~l~~~~~~~g~~v 215 (805)
.-..+.+.+++.+.+.|+++
T Consensus 189 ~p~~~~~~~A~~l~~~G~Dv 208 (239)
T smart00854 189 EPTDEQRELAHALIDAGADV 208 (239)
T ss_pred CCCHHHHHHHHHHHHcCCCE
No 166
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=33.11 E-value=2.6e+02 Score=27.47 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred ceeeecccch-HHHHHHHHHHc-CCEEEEccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 89 GHYNFEGSYD-LVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 89 G~ydF~G~~d-l~~fl~la~~~-GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
|.|-++.... +..|++...+. ...+|.|--|=..-++ +-...||.+.++= ++=+|.-+.. ....+.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~---l~~~i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHK---LLDTIVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHH---HHHHHHHHHH-
Confidence 4566665444 77888887554 5778889555454444 4456799987641 3445544443 3344455555
Q ss_pred cccccccCCceEEec------cccccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 167 EKLFASQGGPIILSQ------IENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 167 ~~l~~~~GGpII~~Q------IENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
.+++.||.+. +||.+- .--.++..|+|.+...+-.+
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~l 114 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGTL 114 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCEE
Confidence 3355688888 667653 34568999999986554443
No 167
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.06 E-value=1e+02 Score=31.41 Aligned_cols=89 Identities=16% Similarity=0.334 Sum_probs=55.5
Q ss_pred EEEEecCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceee--ecc-cchHHHHHHHHHHcCCEEEEcc
Q 003649 46 ISGSIHYPRS-----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN--FEG-SYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 46 ~sG~iHy~R~-----~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~yd--F~G-~~dl~~fl~la~~~GL~VilR~ 117 (805)
.-|.+||+|. +.++.+.-|+.++..+++- ...|--.|..++++. .+- ...+.+|++.++++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3489999864 3666778888888765432 111323333333322 111 1467899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCeEeccc
Q 003649 118 GPYVC----AEW---NFGGFPVWLKYV 137 (805)
Q Consensus 118 GPYic----AEw---~~GGlP~WL~~~ 137 (805)
+++-- +-. ++...|-|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 156789999864
No 168
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.92 E-value=1.1e+02 Score=33.68 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=43.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC--CCc--eeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--SPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp--~~G--~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+++++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4888999999999999999999874422111 111 2332 378899999999999887764
No 169
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.41 E-value=2.6e+02 Score=29.89 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cceeeec----ccchHHHHHHHHHHcCCEEEEccCcccccccCCC
Q 003649 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFE----GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (805)
Q Consensus 54 R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~-~G~ydF~----G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~G 128 (805)
...++.-+..-+.+++.|+.....- ...|.+. ++.-|=+ ....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~---------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG---------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC----------
Confidence 3467777778888899999876541 1122211 1110000 112578899999999998764221
Q ss_pred CCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccC
Q 003649 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (805)
Q Consensus 129 GlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg 187 (805)
.+.|. ...++...+.+...++.++++.+++ | |-+.|||-.+
T Consensus 121 -~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 -YDVYY--------EQANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred -ccccc--------cccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 11121 1122444455556677777777633 2 4567888643
No 170
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=32.31 E-value=91 Score=33.70 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=41.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eee-cccchHHHHHHHHHHc-CCEEEEccCc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNF-EGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~-ydF-~G~~dl~~fl~la~~~-GL~VilR~GP 119 (805)
.++.|.+..+++++.|++.|+. |..-|.... =++ .....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6789999999999999999999 777665321 000 0112556677777765 6777777654
No 171
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.15 E-value=1.9e+02 Score=27.30 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=41.8
Q ss_pred EEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEcccc-----CceeEEeecccccCC-CCeEEEEE
Q 003649 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRAG-INKIALLS 545 (805)
Q Consensus 472 YlwY~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~-----~~~~~~~~~i~l~~G-~n~L~lLv 545 (805)
.+-++..|..+.++. -.+.+. ..|.+.+||||+.+-...+... .........+.|.+| ...|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 456788887765552 134444 6778999999999987765322 001222334556665 67787765
Q ss_pred ecCC
Q 003649 546 IAVG 549 (805)
Q Consensus 546 en~G 549 (805)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 4443
No 172
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.83 E-value=67 Score=34.70 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--CCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWN--GHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn--~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4678899999999988754410 111111223444 666778999999998643
No 173
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.30 E-value=69 Score=33.96 Aligned_cols=60 Identities=13% Similarity=-0.037 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 58 e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+..++.++.+|++|..+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 557888999999999999774333211111112111112466788889999999999997
No 174
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=31.11 E-value=1e+02 Score=27.06 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=34.1
Q ss_pred EEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCe-EEEEEe
Q 003649 475 YMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINK-IALLSI 546 (805)
Q Consensus 475 Y~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~-L~lLve 546 (805)
|+..++.+.+. ..+........+.|.|||..+... .....++|..|.|. |.|-|.
T Consensus 16 Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 16 YTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEEE
Confidence 66666543222 244444556778999999776432 01224567789888 888774
No 175
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.91 E-value=45 Score=37.67 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=46.2
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 49 ~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+-++ |.+...=....+.++++|.++|-+.|+|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 55444433346789999999999999999653320 001123479999999999999998864
No 176
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=30.77 E-value=3.9e+02 Score=29.54 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=78.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~ 135 (805)
.-+.-+-+|+.+|.-+. .|++|- +.-.-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45667889999999888 999974 223357788999999999999986 443
Q ss_pred ccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 136 ~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
. |-. ..+++ .++..+. +. ..--.|-.+-|.||-=...+.-...--+|+...|..+++.|.++
T Consensus 111 d---------d~~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 111 12222 3333333 21 11136888999999532111111235679999999999999999
Q ss_pred ceEecCC
Q 003649 216 PWVMCKE 222 (805)
Q Consensus 216 P~~~~~~ 222 (805)
|+.+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888765
No 177
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=30.45 E-value=79 Score=32.85 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=37.5
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee---cccchHHHHHHHHHH--cCCEEEEccCccccc
Q 003649 52 YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF---EGSYDLVRFIKTVQR--VGLYAHLRIGPYVCA 123 (805)
Q Consensus 52 y~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF---~G~~dl~~fl~la~~--~GL~VilR~GPYicA 123 (805)
..|+..+|--..-+.+|+.|+.++-.---=..|..+ .|-+ .|. .=+-+.| ..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sS--rFlY~k~KGE-----vE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSS--RFLYMKMKGE-----VERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCccc--ceeeeeccch-----hhhhhhhccccEEEEecCcceecc
Confidence 457899999999999999999765432111122111 1211 121 1111222 334689999998874
No 178
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.12 E-value=3.4e+02 Score=30.21 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc--CCCC---CCC------------------------CceeeecccchHHHHHHHH
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVF--WNGH---EPS------------------------PGHYNFEGSYDLVRFIKTV 106 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvf--Wn~h---Ep~------------------------~G~ydF~G~~dl~~fl~la 106 (805)
+.+..++.|+.|...++|++...+- |.+- .|. .|.|- ..|+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7899999999999999999997543 3221 111 12222 35999999999
Q ss_pred HHcCCEEEEccCcccccccCCCCCCeEecccCCeeeec---------CChhhHHHHHHHHHHHHHHHHccccccccCCce
Q 003649 107 QRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRT---------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (805)
Q Consensus 107 ~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~~~~Rt---------~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpI 177 (805)
++.|+.||-.+==--++ =+|+...|++..+. -|+ -..++-+|++.|++.+. .++-. .++.
T Consensus 92 ~~rgI~vIPEID~PGH~-------~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~--~~f~~-~~~~ 160 (326)
T cd06564 92 KDRGVNIIPEIDSPGHS-------LAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYL--DGFNP-KSDT 160 (326)
T ss_pred HHcCCeEeccCCCcHHH-------HHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHH--HhcCC-CCCE
Confidence 99999998765211111 23444444332221 011 12344455555555555 43321 1233
Q ss_pred EEeccc-cccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003649 178 ILSQIE-NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (805)
Q Consensus 178 I~~QIE-NEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 215 (805)
| .|. -|+-... ...+.-..|++.+.+.+++.|..+
T Consensus 161 ~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 161 V--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred E--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 2 221 1322100 011123468888888888887653
No 179
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.94 E-value=1.2e+02 Score=33.97 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=50.5
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCCCCCC---------Cceeeeccc---chHHHHHH
Q 003649 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYV----------FWNGHEPS---------PGHYNFEGS---YDLVRFIK 104 (805)
Q Consensus 50 iHy~R~---~~e~W~~~l~k~Ka~GlN~V~tYv----------fWn~hEp~---------~G~ydF~G~---~dl~~fl~ 104 (805)
+|..|. +.+.-++.++++++.||-.=-+++ .|+-..-. -+.++|... -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566663 567788999999999986555433 34432211 133444321 28999999
Q ss_pred HHHHcCCEEEEccCcccc
Q 003649 105 TVQRVGLYAHLRIGPYVC 122 (805)
Q Consensus 105 la~~~GL~VilR~GPYic 122 (805)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888875
No 180
>PLN02877 alpha-amylase/limit dextrinase
Probab=29.70 E-value=1e+02 Score=39.61 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003649 97 YDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (805)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 181
>PLN02784 alpha-amylase
Probab=29.54 E-value=72 Score=40.27 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCC---CCc-eee----ecccchHHHHHHHHHHcCCEEEEcc
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEP---SPG-HYN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp---~~G-~yd----F~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.++|..++++|+++|...=+.....+ .+. -|+ |-...||.++|+.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999988543222111 111 122 2334799999999999999999875
No 182
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.27 E-value=1.2e+02 Score=35.04 Aligned_cols=71 Identities=13% Similarity=0.269 Sum_probs=47.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccccccC
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPYicAEw~ 126 (805)
.+.+...+.++.+|+.|+-.=...+-..... ..+.|.|+.. -|+.++++.+++.|+++++..=|+|.-+-+
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 3577788999999999986655544322222 4445666543 289999999999999999998887765543
No 183
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.00 E-value=2.3e+02 Score=30.68 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=65.8
Q ss_pred eEEEEEEecCCC----CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE--EEc
Q 003649 43 RILISGSIHYPR----STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLR 116 (805)
Q Consensus 43 ~~l~sG~iHy~R----~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR 116 (805)
.+.+++..|+.+ .+.+.=.++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 467888887654 23332235566667889999999333 3444 7889999999997664 444
Q ss_pred cCccc-------ccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 117 IGPYV-------CAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 117 ~GPYi-------cAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+-|-. .++|..-.+|.|+.+.=. +...+....+++--++..++++.++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 233666778888875110 0111223455556666666666665
No 184
>PRK09875 putative hydrolase; Provisional
Probab=28.84 E-value=5.2e+02 Score=28.58 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=58.0
Q ss_pred eEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH
Q 003649 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (805)
Q Consensus 28 ~v~~d~~~f~idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (805)
.+++-+..++++..+.. +......-..+.=...|+.+|++|.+||=- ..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 46666767776653322 111221123455566788899999988732 221 112479999999999
Q ss_pred HcCCEEEEccCcccccccCCCCCCeEecc
Q 003649 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 108 ~~GL~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885332 5777763
No 185
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.57 E-value=3.3e+02 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHH
Q 003649 153 MQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (805)
Q Consensus 153 ~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~ 209 (805)
+.+-+.+++..++ ..+.++|++. ||-|.-.-.+.+..+.|.+.+-.+-+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viVs--nEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILVS--NEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEEE--CCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445556666666 3566888884 89886333356678889876655543
No 186
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=28.40 E-value=1.4e+02 Score=32.83 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=47.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------CCceeeecccchHHHHHHHHHHcCCEEE
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------SPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvf----Wn~hEp----------------~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (805)
.+.+...+.|+.|...++|++..++- |.+--+ ..|.|.- .|+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37889999999999999999999887 755321 1223333 499999999999999998
Q ss_pred Ecc
Q 003649 115 LRI 117 (805)
Q Consensus 115 lR~ 117 (805)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 765
No 187
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.23 E-value=1.2e+02 Score=35.73 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=46.0
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 50 iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
..|.+.|.+.-++.++++.+.|++.|+++..-|.- +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45666778888889999999999999998876653 258889999999999886653
No 188
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=28.06 E-value=3e+02 Score=31.78 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCC--------eeeecCChhhHHHHHHHH
Q 003649 86 PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG--------ISFRTDNGPFKVAMQGFT 157 (805)
Q Consensus 86 p~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL~~~p~--------~~~Rt~~~~y~~~~~~~~ 157 (805)
+..|.|||+.+..=+.||+.|++.|...++-. .--.|+|+..... ..+| +...++.-.|+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YL 160 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYL 160 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccC---hhHHHHHHHHH
Confidence 45789999987777889999999999877653 2236888875321 1122 34456666677
Q ss_pred HHHHHHHHccccccccCCceEEeccccccCCCc-------ccCC-cchHHHHHHHHHHHHcCCCCcceEecC
Q 003649 158 QKIVQMMKNEKLFASQGGPIILSQIENEYGPES-------KSLG-AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (805)
Q Consensus 158 ~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~-------~~~~-~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 221 (805)
..++++++++.+ +|=-+--=||-..-. +.+. +.-.+.++.|.+.+++.|+..-+.+|+
T Consensus 161 a~Vv~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 161 ADVVKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 777777764332 444444458864311 0111 123567788888888888886655555
No 189
>PRK15492 triosephosphate isomerase; Provisional
Probab=27.98 E-value=1.1e+02 Score=33.43 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=37.8
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 44699999988888 6666554 343 3456677788999999999999987
No 190
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.86 E-value=9e+02 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEEccc----CCCCCCCCceeeecccchHHHHHHHHHHcCCE--EEEccCccc
Q 003649 62 DLIRKAKDGGLDVIDTYVF----WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYV 121 (805)
Q Consensus 62 ~~l~k~Ka~GlN~V~tYvf----Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~--VilR~GPYi 121 (805)
..++.+.+.|+|+++.|+- |..-+..+ .++.+|.++|+++||. .++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce
Confidence 4778899999999999875 65544443 4899999999999884 233456664
No 191
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.76 E-value=1.5e+02 Score=33.69 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.|...|+.+++.|++.|.-+...-.-....+. .-...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764322221111111 123588999999999998653
No 192
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.27 E-value=84 Score=33.08 Aligned_cols=61 Identities=16% Similarity=0.011 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+.+++.|+.++++|..+|.+-..+..-++..-+..-.-...+.++.++|++.|+.+.+.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3678889999999999999863322110000001000112357888899999999999987
No 193
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.20 E-value=1e+02 Score=33.07 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceee---ec-ccchHHHHHHHHHHcCCEEEEcc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN---FE-GSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~yd---F~-G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+++.++.++++|.++|.+.- .+...+.-+ +. -...|.++.++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997521 111111000 11 01356788899999999999985
No 194
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=27.10 E-value=2.3e+02 Score=29.85 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=65.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec-ccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEe
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL 134 (805)
.+.+++..++.++++|+..+-+|..... ....|..+ |..|-..-+++|+++|+ -+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5778899999999999999999988766 23333443 77899999999999998 333 33344
Q ss_pred cccCCeeeecCChhhHHHHHHHHHHHHHHHHcc
Q 003649 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (805)
Q Consensus 135 ~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~ 167 (805)
--+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 33347788899999998888743
No 195
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=26.96 E-value=1.1e+02 Score=32.95 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
...++|++|++.|-. +|-|.+. .|. +.+..+.+=++.|.++||.+|+++|
T Consensus 78 S~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERRQ-YFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----CcccccC-ccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999998888 6655543 332 2334455555669999999999987
No 196
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.68 E-value=9.5e+02 Score=26.98 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCce-eeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhh
Q 003649 267 VHRRPVQDLAFAVARFIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCE 345 (805)
Q Consensus 267 ~~~r~~~d~a~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~pKy~~lr~l~~~i~~~~ 345 (805)
...++++++...+.+..++||++ +|. +.+.+|.+..+.-..||++.+.|+...
T Consensus 288 ~~~ks~~~li~~l~~~vs~ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ng 341 (346)
T PF01120_consen 288 EKYKSADELIDILVDSVSRNGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNG 341 (346)
T ss_dssp CGS--HHHHHHHHHHHHTBTEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHG
T ss_pred CCcCCHHHHHHHHHHHhccCceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 34578899999999999999884 343 345678887778889999999988765
Q ss_pred cc
Q 003649 346 YA 347 (805)
Q Consensus 346 ~~ 347 (805)
++
T Consensus 342 ea 343 (346)
T PF01120_consen 342 EA 343 (346)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 197
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=26.63 E-value=1.9e+02 Score=31.12 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=60.8
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCcccc----
Q 003649 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC---- 122 (805)
Q Consensus 49 ~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GPYic---- 122 (805)
+.|+...+.+.=-++|++=-++|.+.+-|=.+.+ . ..+.+|++.|++.| +.|++.+=|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd----------~---~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFD----------N---DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccccc----------H---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 3444444333333444444456999999944433 2 37889999999998 556766666432
Q ss_pred ---cccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 123 ---AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 123 ---AEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
++|-.-++|.|+.+.=. ....+....+++-.++..++++.++
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45556678999875210 0011223345556666777776666
No 198
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.61 E-value=1.5e+02 Score=32.16 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=40.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
.|.+.=++.++++.+.|++.|+++++.|- + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45566788999999999999999887654 2 3788999999999998775
No 199
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.59 E-value=1.6e+02 Score=32.92 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=47.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCCCCCC------Cceee--------ecccchHHHHHHHHHHcCCEEEEcc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEPS------PGHYN--------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvf----Wn~hEp~------~G~yd--------F~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.+...+.|..|...++|+...++- |.+.-+. .|.+. |=-..|+.++++.|++.|+.||-.+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 8899999999999999999999874 6543221 22221 1123599999999999999999765
No 200
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=26.38 E-value=1.9e+02 Score=33.80 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=62.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCC----Cceeee-----ccc-----chHHHHHHHHH-HcCCEEEEccCc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPS----PGHYNF-----EGS-----YDLVRFIKTVQ-RVGLYAHLRIGP 119 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tY-vfWn~hEp~----~G~ydF-----~G~-----~dl~~fl~la~-~~GL~VilR~GP 119 (805)
+-+.|+++|+.++++|.|+|-.- +---...-+ ..|..| +.. .|+.++++.++ +.||.++.-.
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 55689999999999999999651 111101001 122222 122 49999999985 7999987654
Q ss_pred ccccccCCCCC-CeEecccCCeeeecCChhhHHHHHHHHHHH
Q 003649 120 YVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (805)
Q Consensus 120 YicAEw~~GGl-P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i 160 (805)
=|++=.. =.||.++|+.-.-..+.|+++.+-..=++|
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL 135 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRAL 135 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHH
Confidence 1554333 469999998766666777776544433333
No 201
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.32 E-value=48 Score=34.50 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=52.7
Q ss_pred CEE-eEEEEEEecC-CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC--------CCCc----eeeecccchHHHHHHH
Q 003649 40 GQR-RILISGSIHY-PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--------PSPG----HYNFEGSYDLVRFIKT 105 (805)
Q Consensus 40 Gk~-~~l~sG~iHy-~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE--------p~~G----~ydF~G~~dl~~fl~l 105 (805)
+++ +.+.-|+-+. -|+|.|.|.+.++++++-| +.+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 444 4444444443 4469999999999999999 55667887766 1222 5889999999999999
Q ss_pred HHHcCCEEEEccCc
Q 003649 106 VQRVGLYAHLRIGP 119 (805)
Q Consensus 106 a~~~GL~VilR~GP 119 (805)
.+...+.|-.-.||
T Consensus 181 i~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 181 ISRADLVIGNDTGP 194 (247)
T ss_dssp HHTSSEEEEESSHH
T ss_pred HhcCCEEEecCChH
Confidence 99999999888877
No 202
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.19 E-value=1.3e+02 Score=24.10 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003649 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (805)
Q Consensus 57 ~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (805)
|-.-.+.+.-+.+.|+|.+.++. +..++.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44456788889999999998876 3333334555666533 4889999999999765
No 203
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=26.12 E-value=75 Score=36.59 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=57.9
Q ss_pred ceeEEEec--CcEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCC--CCEEEEcccCCCCCCCCceeeeccc-chH
Q 003649 26 CSTVTYDR--KAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGG--LDVIDTYVFWNGHEPSPGHYNFEGS-YDL 99 (805)
Q Consensus 26 ~~~v~~d~--~~f~idGk~~~l~sG~iHy~R~-~~e~W~~~l~k~Ka~G--lN~V~tYvfWn~hEp~~G~ydF~G~-~dl 99 (805)
..-|-.|. +.=++||-+ +-.++.+.++- ..+.-+..|++.+..| -..|-| +|.|..+|. .+|
T Consensus 123 ~dli~~D~lnHASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL 190 (388)
T COG0156 123 GDLIFSDELNHASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPL 190 (388)
T ss_pred CcEEEEechhhhhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCH
Confidence 34444443 344778877 55667777765 5677888888876554 344544 899999998 899
Q ss_pred HHHHHHHHHcCCEEEEc
Q 003649 100 VRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 100 ~~fl~la~~~GL~VilR 116 (805)
.+++++++++|.++++-
T Consensus 191 ~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 191 PELVELAEKYGALLYVD 207 (388)
T ss_pred HHHHHHHHHhCcEEEEE
Confidence 99999999999888765
No 204
>PRK06703 flavodoxin; Provisional
Probab=25.68 E-value=2.9e+02 Score=26.69 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=60.5
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+..-..++++-..+-.-.+|+.+.+-+..+++.-++.....+|-...-. |. ....-...+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665545533445666777788777666665566666322110 11 012345567777899999887764
Q ss_pred CcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 118 GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 118 GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+- +++..++..-++.+++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 11112235678889999999987776
No 205
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.47 E-value=1.2e+02 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
-.++|++|++.|-+ +|-|.+. -|. +.+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34699999988887 6655554 332 4455677888999999999999987
No 206
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.41 E-value=8.1e+02 Score=27.60 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHcCCEE--EEccCcccccccCCCCCCeEecccC-CeeeecCChhhHHHHHHHHHHHHHHHHcccccccc
Q 003649 97 YDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP-GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQ 173 (805)
Q Consensus 97 ~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~GGlP~WL~~~p-~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~ 173 (805)
+-+..+.-.|++.||+. ++|=.+ + ++=.-+.||+.++ ++.+|-.+...-....+-++.+.+.+++. ..
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~---~--~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~----g~ 146 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIE---A--NYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQ----GG 146 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccc---c--ccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhc----CC
Confidence 45777788889999995 455332 2 3444567888654 66777665443333445555566666522 11
Q ss_pred CCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCC--CCcce-EecCCCCCCcccccCCCCCccCCCCCCCCCCCc
Q 003649 174 GGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLD--TGVPW-VMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPT 250 (805)
Q Consensus 174 GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g--~~vP~-~~~~~~~~p~~vi~t~ng~~~~~~~~~~p~~P~ 250 (805)
-.-||-.+=+|=+|.. -|++-+.+++.+.. ...-+ +.|.++.. |.-|. ...+....++.+.
T Consensus 147 kpyvIp~GG~~~~g~l---------Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~g------T~AGl-~~g~~~~~~~~~V 210 (323)
T COG2515 147 KPYVIPEGGSSPLGAL---------GYVRLALEIAEQAEQLLKFDSVVVAPGSGG------THAGL-LVGLAQLGPDVEV 210 (323)
T ss_pred CCcEeccCCcCccccc---------cHHHHHHHHHHHHhhccCCCEEEEeCCCcc------hHHHH-HHHhhhccCCCce
Confidence 1234444444554442 26666655554322 22222 22222110 00000 0112222233333
Q ss_pred cccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchh
Q 003649 251 LWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPK 330 (805)
Q Consensus 251 ~~tE~w~Gwf~~wG~~~~~r~~~d~a~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~pK 330 (805)
+-- .-.++.++....+.++.+..+..+.+ .+ ..-..+++||..| +||.++.+-
T Consensus 211 iG~-------------~v~~~~~~~~~qv~~L~~~~a~~~~~-----------~~-~~~v~~~~dy~~~--~Yg~p~~e~ 263 (323)
T COG2515 211 IGI-------------DVSADPEKLKEQVLNLAQATAELLGL-----------GS-EADVLLSDDYHHP--GYGKPNEED 263 (323)
T ss_pred EEE-------------eecCCHHHHHHHHHHHHHHHHHHcCC-----------CC-CceEEEEecccCC--ccCCcCHHH
Confidence 311 11245566666666665554432111 11 2236899999999 899998777
Q ss_pred HHHHHHH
Q 003649 331 YGHLKQL 337 (805)
Q Consensus 331 y~~lr~l 337 (805)
+..+|.+
T Consensus 264 ~e~i~~~ 270 (323)
T COG2515 264 IEAIKLL 270 (323)
T ss_pred HHHHHHH
Confidence 7766665
No 207
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=25.40 E-value=96 Score=38.41 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHHHHHCCCCEEEE-cccCCCCCCCC---c-eeee----------------cc-----cchHHHHHHHHHHcCCEEEEcc
Q 003649 64 IRKAKDGGLDVIDT-YVFWNGHEPSP---G-HYNF----------------EG-----SYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 64 l~k~Ka~GlN~V~t-YvfWn~hEp~~---G-~ydF----------------~G-----~~dl~~fl~la~~~GL~VilR~ 117 (805)
|.-+|++|+++|+. .||.-..|+.. | .|+| .+ .+.+..+|+.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999998 78866655543 2 2222 22 2478889999999999999974
No 208
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.06 E-value=1e+02 Score=33.07 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEccc-CCCCCC---CCceeee-cccchHHHHHHHHHHcCCEEEEccCcccccccCCC
Q 003649 54 RSTPEMWEDLIRKAKDGGLDVIDTYVF-WNGHEP---SPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (805)
Q Consensus 54 R~~~e~W~~~l~k~Ka~GlN~V~tYvf-Wn~hEp---~~G~ydF-~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~G 128 (805)
..+++.|++..+.+|+.|+..+.|..- ..+..- ..--|-- |+...=..||+.+++.|+-|||-.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG---------- 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG---------- 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T----------
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC----------
Confidence 469999999999999999999999322 111100 1111111 3344444689999999999999976
Q ss_pred CCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHH
Q 003649 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMA 208 (805)
Q Consensus 129 GlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~ 208 (805)
+ .-++++++-++.+ ++ ..+.+|++.|==-.|-.- ..+..-.-|+.|++.+
T Consensus 122 ~------------------stl~EI~~Av~~~----~~-----~~~~~l~llHC~s~YP~~---~e~~NL~~i~~L~~~f 171 (241)
T PF03102_consen 122 M------------------STLEEIERAVEVL----RE-----AGNEDLVLLHCVSSYPTP---PEDVNLRVIPTLKERF 171 (241)
T ss_dssp T--------------------HHHHHHHHHHH----HH-----HCT--EEEEEE-SSSS-----GGG--TTHHHHHHHHS
T ss_pred C------------------CCHHHHHHHHHHH----Hh-----cCCCCEEEEecCCCCCCC---hHHcChHHHHHHHHhc
Confidence 1 2345555555444 21 234588888854455431 1223334566666654
No 209
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.01 E-value=4.3e+02 Score=24.99 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=47.7
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003649 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (805)
+.|.-+++.+|. +..+-.++.+.+.++.+.+.|+-++-..+-=.++ ..| +.++++|.+++|-+|.=|
T Consensus 40 l~~gElvlttg~-~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGY-ALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCc-ccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEeC
Confidence 556666665553 3334467789999999999999988885542222 223 488999999999998765
No 210
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=24.51 E-value=2.6e+02 Score=31.14 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=42.8
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-C-CCceeeecccchHHHHHHHHHHc-CCEEEEccCc
Q 003649 45 LISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-P-SPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (805)
Q Consensus 45 l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hE-p-~~G~ydF~G~~dl~~fl~la~~~-GL~VilR~GP 119 (805)
++..++ .-..++.|.+..++++++|++.|+. |+.- | .++.+..+-...+.+.++.+++. .+-|++...|
T Consensus 101 pvi~si--~g~~~~~~~~~a~~~~~~gad~iEl----N~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p 172 (325)
T cd04739 101 PVIASL--NGVSAGGWVDYARQIEEAGADALEL----NIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP 172 (325)
T ss_pred eEEEEe--CCCCHHHHHHHHHHHHhcCCCEEEE----eCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 344555 2356799999999999999999999 6643 2 23444332112355666666553 4555555443
No 211
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=24.45 E-value=55 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=13.8
Q ss_pred ceEEEEECCeeeeee
Q 003649 646 GKGQVWINGQSIGRY 660 (805)
Q Consensus 646 gKG~vwVNG~niGRY 660 (805)
.+|.+||||++|.|.
T Consensus 55 t~G~i~~~~~dl~~l 69 (223)
T COG2884 55 TRGKILVNGHDLSRL 69 (223)
T ss_pred CCceEEECCeecccc
Confidence 569999999999997
No 212
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.44 E-value=99 Score=35.80 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=42.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE-EEccC
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIG 118 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V-ilR~G 118 (805)
...+.-+..|+.+|+.|+|+|-++..=.---..+-.|.= -..|-...++++.+.|..+ +|-+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 456678889999999999999996543321111111111 1246667788888999985 68875
No 213
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.29 E-value=1.1e+02 Score=32.86 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.0
Q ss_pred EECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEE
Q 003649 37 LINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVID 76 (805)
Q Consensus 37 ~idGk~~~l~sG~iHy~R~-~~e~W~~~l~k~Ka~GlN~V~ 76 (805)
.+.|+++..+.|..|+..- ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4689999999999997554 444457889999999997653
No 214
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=24.27 E-value=1.4e+02 Score=36.45 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=45.1
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003649 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (805)
Q Consensus 50 iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (805)
+=|.|.|.+.-+..++++++.|++.|+++...|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 55677788888889999999999999998766653 3788999999999998643
No 215
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.25 E-value=1.5e+02 Score=35.88 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=58.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCcccc-------cccCCCCCCeE
Q 003649 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC-------AEWNFGGFPVW 133 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GPYic-------AEw~~GGlP~W 133 (805)
+|++=.++|.+-|.|=.| ||.+ .+.+|++.|+++| +.+|.-+-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 333444679999999333 4444 7789999999998 667777777442 45666667888
Q ss_pred ecccCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 134 LKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 134 L~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
+.+.=. ....+++..++.--++..++++.|+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~ 258 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKIL 258 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 875211 1233445556666667777777776
No 216
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.11 E-value=1.7e+02 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (805)
.+++..++.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 489999999999999998877661 11 245689999999999876
No 217
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.04 E-value=4.5e+02 Score=28.33 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCCCCCeEecccC
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 138 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPYicAEw~~GGlP~WL~~~p 138 (805)
.+.++.+++.|+++||.++- .|.--....-...+..+|-+.++++++.+ +.-=+||. +
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---i------------- 73 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---I------------- 73 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee---e-------------
Confidence 46889999999999999654 22111111112236788888999998863 33334553 1
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHH
Q 003649 139 GISFRTDNGPFKVAMQGFTQKIVQMMK 165 (805)
Q Consensus 139 ~~~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (805)
.+=+.|+.-++...+.+.+.++.-+
T Consensus 74 --Nlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 74 --NLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --ecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334466666665555555555444
No 218
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=24.03 E-value=5.5e+02 Score=26.84 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc-eeeec-ccchHHHHHHHHHHcCCEEEEcc------CcccccccCCCCCCe
Q 003649 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG-HYNFE-GSYDLVRFIKTVQRVGLYAHLRI------GPYVCAEWNFGGFPV 132 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G-~ydF~-G~~dl~~fl~la~~~GL~VilR~------GPYicAEw~~GGlP~ 132 (805)
++.++.|+++|+|++.+ | .-.|+ |..-|.+.++..+++|+..+--- .||.--|.+ |...
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~--g~kV 133 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVN--GIKV 133 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEEC--CEEE
Q ss_pred EecccCCeeeec----------CChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHH
Q 003649 133 WLKYVPGISFRT----------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVN 202 (805)
Q Consensus 133 WL~~~p~~~~Rt----------~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~ 202 (805)
=+...-...... ....-.+.++++++++-+. . .+ -|++.+...||.. .-..+.+
T Consensus 134 g~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~ 197 (239)
T cd07381 134 AFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQR 197 (239)
T ss_pred EEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHH
Q ss_pred HHHHHHHcCCCCc
Q 003649 203 WAAKMAVGLDTGV 215 (805)
Q Consensus 203 ~l~~~~~~~g~~v 215 (805)
.+++.+.+.|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 219
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=24.02 E-value=95 Score=37.33 Aligned_cols=42 Identities=12% Similarity=-0.038 Sum_probs=28.4
Q ss_pred ceEEeccccccCCCcccC---CcchHHHHHHHHHHHHcCCCCcce
Q 003649 176 PIILSQIENEYGPESKSL---GAAGHAYVNWAAKMAVGLDTGVPW 217 (805)
Q Consensus 176 pII~~QIENEyg~~~~~~---~~~~~~Y~~~l~~~~~~~g~~vP~ 217 (805)
++-.-|.|+||.--.... .-.+.++++.|+++.++.++.+++
T Consensus 375 ~~~f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~~~~~f 419 (541)
T TIGR01676 375 DCGGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKENIPAPA 419 (541)
T ss_pred ccccceEEEEEEEecccccccccchHHHHHHHHHHHHhcCCCCCC
Confidence 344568888986311000 015689999999999998888753
No 220
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=23.93 E-value=1.9e+02 Score=28.16 Aligned_cols=91 Identities=12% Similarity=0.233 Sum_probs=47.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee-cccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEe
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF-~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGlP~WL 134 (805)
.+.+.+..++.++++|+..+-+|.....+. ......+ .|..|-..-++.|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468889999999999999999998872221 1111222 2668899999999999983 2 344444
Q ss_pred cccCCeeeecCChhhHHHHHHHHHHHHHHHHc
Q 003649 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (805)
Q Consensus 135 ~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (805)
--+ .-..+..+...+..|++.+.+.|..
T Consensus 100 avD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGG
T ss_pred Eee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 322 1225677788888888888888874
No 221
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.92 E-value=37 Score=38.78 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCEE-EEccCcccccccCCCCC--CeEecc
Q 003649 99 LVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGF--PVWLKY 136 (805)
Q Consensus 99 l~~fl~la~~~GL~V-ilR~GPYicAEw~~GGl--P~WL~~ 136 (805)
-++.++.|.+.||.| |.||| ||-+....|-+ +.|+.+
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 357889999999996 89997 77777776654 556543
No 222
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=1.4e+02 Score=32.38 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeee-cccchHHHHHHHHHHcCCEEEEccC
Q 003649 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 65 ~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF-~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
.++|++|++.|-+ +|-|.+. .| +.+..+.+=++.|.++||.+||+.|
T Consensus 82 ~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 82 EMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 4699999988888 7766544 33 2334566888999999999999987
No 223
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.66 E-value=8.1e+02 Score=27.57 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceeeec---ccchHHHHHHHHHHcCCEEEEcc
Q 003649 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYNFE---GSYDLVRFIKTVQRVGLYAHLRI 117 (805)
Q Consensus 55 ~~~e~W~~~l~k~Ka~GlN~V~tYvf----Wn~hEp------~~G~ydF~---G~~dl~~fl~la~~~GL~VilR~ 117 (805)
.+.+..++.|..|-...+|+...++- |.+--+ +.|.|.=. -..|+..+++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36899999999999999999998753 554322 12322111 13499999999999999999765
No 224
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=23.41 E-value=1.8e+02 Score=31.81 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred CHhHHHHHHHHHHHCC-CCEEEEcccCCCCCCCC--ceeeecc-cchHHHHHHHHHHc-CCEEEEccC
Q 003649 56 TPEMWEDLIRKAKDGG-LDVIDTYVFWNGHEPSP--GHYNFEG-SYDLVRFIKTVQRV-GLYAHLRIG 118 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~G-lN~V~tYvfWn~hEp~~--G~ydF~G-~~dl~~fl~la~~~-GL~VilR~G 118 (805)
.++.|.+..++++++| ++.|+. |.+-|.. |-+.+.. ..-+.+.++.+++. ++-|+++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iEl----N~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIEL----NISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEE----ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6899999999999999 999999 6665542 1122221 23556667777765 555666654
No 225
>PRK14566 triosephosphate isomerase; Provisional
Probab=23.38 E-value=1.4e+02 Score=32.56 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=37.3
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34699999988887 6666553 232 3445677789999999999999987
No 226
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=23.24 E-value=5.8e+02 Score=29.47 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCCCHhHH----HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 43 RILISGSIHYPRSTPEMW----EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 43 ~~l~sG~iHy~R~~~e~W----~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
.++++|.+--...++... .+.++++++.++. +|+.+.=|.... .+....++.++.|++|+-.+.
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEeccc
Confidence 567888886544444333 3456677777754 455454454332 244566778899999885542
Q ss_pred -----cccccccCCCCCCeEecccCC
Q 003649 119 -----PYVCAEWNFGGFPVWLKYVPG 139 (805)
Q Consensus 119 -----PYicAEw~~GGlP~WL~~~p~ 139 (805)
..|--+-..|...+|+.-.|-
T Consensus 110 ~~~~~~~v~l~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIILPRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEEecCCCCeeeEEEECCC
Confidence 112223345556677766554
No 227
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.68 E-value=1.2e+02 Score=32.25 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=61.7
Q ss_pred eEEEEEEecCCC-CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-----------CCceeeecccchHHHHHHHHHHcC
Q 003649 43 RILISGSIHYPR-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----------SPGHYNFEGSYDLVRFIKTVQRVG 110 (805)
Q Consensus 43 ~~l~sG~iHy~R-~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-----------~~G~ydF~G~~dl~~fl~la~~~G 110 (805)
..+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333344444444 599999999999998888776442 22221 234578899999999999999999
Q ss_pred CEEEEccCcccccccCCCCCCeEecc
Q 003649 111 LYAHLRIGPYVCAEWNFGGFPVWLKY 136 (805)
Q Consensus 111 L~VilR~GPYicAEw~~GGlP~WL~~ 136 (805)
+.|-...||.--| ..=|.|.....
T Consensus 201 l~I~~Dsg~~HlA--~a~~~p~i~l~ 224 (279)
T cd03789 201 LVVTNDSGPMHLA--AALGTPTVALF 224 (279)
T ss_pred EEEeeCCHHHHHH--HHcCCCEEEEE
Confidence 9999988885544 23345555543
No 228
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.29 E-value=2.5e+02 Score=30.47 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=56.3
Q ss_pred eEEEecCcEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec--ccchHHHHHH
Q 003649 28 TVTYDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIK 104 (805)
Q Consensus 28 ~v~~d~~~f~idGk~~~l~sG~iHy~R~-~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~--G~~dl~~fl~ 104 (805)
.|.. ..+.+.+..+.++.| +-.+ ..+.-.+..+++|+.|....+.|+|=+...| |.|. |..-|..+-+
T Consensus 13 ~i~~--~~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDV--GGVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEE--CCEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 3555 235566544666777 2222 5666778888899999998888777644333 4455 4567888899
Q ss_pred HHHHcCCEEEEcc
Q 003649 105 TVQRVGLYAHLRI 117 (805)
Q Consensus 105 la~~~GL~VilR~ 117 (805)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998886
No 229
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.24 E-value=1.7e+02 Score=28.35 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
-++.++++++.|+++|.. .-|.... ....+.+.+++.|+.+++-
T Consensus 18 ~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 18 PEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp HHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEe
Confidence 457789999999999998 6663333 4778999999999998764
No 230
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.89 E-value=5.9e+02 Score=26.28 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=64.5
Q ss_pred EEeEEEEEEecCCC--C-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHH-HHHHHHc--CCEEE
Q 003649 41 QRRILISGSIHYPR--S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF-IKTVQRV--GLYAH 114 (805)
Q Consensus 41 k~~~l~sG~iHy~R--~-~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~f-l~la~~~--GL~Vi 114 (805)
||++.++-||=.=. + |--.|..++ ++..|++.|-. -|+|+.-++.+ .++..+. .++ +
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~-~ 64 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLI-V 64 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEE-E
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEE-E
Confidence 67888888876532 2 444588766 56779998876 58887666554 3444443 343 4
Q ss_pred EccCcccccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec-cccccCCCcccC
Q 003649 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ-IENEYGPESKSL 193 (805)
Q Consensus 115 lR~GPYicAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~Q-IENEyg~~~~~~ 193 (805)
|..||- .+-..|.+.+..|++.|-+. +| .=|||+++ +-.+-+.....-
T Consensus 65 ld~~~N-----------------------~~~~~~~~~~~~fv~~iR~~---hP-----~tPIllv~~~~~~~~~~~~~~ 113 (178)
T PF14606_consen 65 LDCGPN-----------------------MSPEEFRERLDGFVKTIREA---HP-----DTPILLVSPIPYPAGYFDNSR 113 (178)
T ss_dssp EEESHH-----------------------CCTTTHHHHHHHHHHHHHTT----S-----SS-EEEEE----TTTTS--TT
T ss_pred EEeecC-----------------------CCHHHHHHHHHHHHHHHHHh---CC-----CCCEEEEecCCccccccCchH
Confidence 555542 23456888888887765331 22 34999999 554444322211
Q ss_pred CcchHHHHHHHHHHHHcC
Q 003649 194 GAAGHAYVNWAAKMAVGL 211 (805)
Q Consensus 194 ~~~~~~Y~~~l~~~~~~~ 211 (805)
+..-.++.+.+++.++++
T Consensus 114 ~~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 114 GETVEEFREALREAVEQL 131 (178)
T ss_dssp S--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 223445666666666554
No 231
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.84 E-value=1.6e+02 Score=32.65 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=47.2
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-------------CCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-------------SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp-------------~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
=|+|+|.|.+.++.+++.|+..| +++.-.|. .+...|..|..+|..+..+.+...++|=--.||
T Consensus 197 K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp 273 (352)
T PRK10422 197 KCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAP 273 (352)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 45799999999999988887554 44543331 123467888888888888888888888777665
No 232
>PTZ00333 triosephosphate isomerase; Provisional
Probab=21.72 E-value=1.7e+02 Score=31.75 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 65 ~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
.++|++|++.|-+ +|-|.+. .|. +.+.++.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii----GHSERR~-~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL----GHSERRQ-YFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5799999988888 6655543 332 4467888999999999999999987
No 233
>PLN02561 triosephosphate isomerase
Probab=21.71 E-value=1.6e+02 Score=32.03 Aligned_cols=50 Identities=12% Similarity=-0.010 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 63 ~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
...++|++|++.|-. +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999988887 6666554 332 3356777888999999999999987
No 234
>PLN02389 biotin synthase
Probab=21.60 E-value=1.1e+02 Score=34.93 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003649 61 EDLIRKAKDGGLDVIDTYVF--WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (805)
Q Consensus 61 ~~~l~k~Ka~GlN~V~tYvf--Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (805)
++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 235
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.32 E-value=1.9e+02 Score=29.70 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=53.7
Q ss_pred EeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--eecccchHHHHHHHHHHcCCEEEEccCc
Q 003649 42 RRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (805)
Q Consensus 42 ~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~y--dF~G~~dl~~fl~la~~~GL~VilR~GP 119 (805)
++++++|+.+....+...=+..++.+++.|..+....+. .+ .+ ++.. ++ +.-++.++++..++++..||.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~l-~~-~~~~~~~~-~~~~~~~~~~~i~~AD~iIi~tP-- 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-NF-AP-EDLLYARF-DSPALKTFTEQLAQADGLIVATP-- 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-CC-Ch-HHHHhccC-CCHHHHHHHHHHHHCCEEEEECC--
Confidence 467889998876667888888888899999766544222 11 11 1000 11 12489999999999999999887
Q ss_pred ccccccCCCCCCe
Q 003649 120 YVCAEWNFGGFPV 132 (805)
Q Consensus 120 YicAEw~~GGlP~ 132 (805)
|| +|++|.
T Consensus 76 ----~Y-~~s~pg 83 (191)
T PRK10569 76 ----VY-KASFSG 83 (191)
T ss_pred ----cc-CCCCCH
Confidence 56 455543
No 236
>PLN02231 alanine transaminase
Probab=21.25 E-value=2.2e+02 Score=34.09 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
+....+..++.++..+..|.++--.++. |-|-|.=-.++=+ .+.+++++|+++|+++|.-
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 4567777888887777777766445554 7788877677666 8999999999999998855
No 237
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.07 E-value=2.5e+02 Score=31.32 Aligned_cols=53 Identities=32% Similarity=0.607 Sum_probs=40.0
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 53 ~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
..++.+.|.+.+++++++|+..|. |..-||-= +.|+.++++.+++.|+++.+-
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~----~~GGEPll-------~~~~~~ii~~~~~~g~~~~l~ 87 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLH----FSGGEPLA-------RPDLVELVAHARRLGLYTNLI 87 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEE----EeCccccc-------cccHHHHHHHHHHcCCeEEEE
Confidence 346889999999999999974443 35567742 237789999999999987654
No 238
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.06 E-value=1.5e+02 Score=31.91 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=38.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCccccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCA 123 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYicA 123 (805)
..+.-.+.++++|+.|+ -|+.+| +|.+ +.|+.|++.|-..| |-.|||..+
T Consensus 111 ~~~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 111 QFDKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34556778889999998 555544 6666 66999999999866 999999876
No 239
>PLN02429 triosephosphate isomerase
Probab=20.88 E-value=1.5e+02 Score=33.23 Aligned_cols=49 Identities=18% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003649 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (805)
Q Consensus 64 l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (805)
..++|++|++.|-. +|-|.+. .|. +.+..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR~-~f~-Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERRH-VIG-EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccCC-CCC-cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 34699999988887 6666644 332 1223333334459999999999997
No 240
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=20.86 E-value=2.9e+02 Score=29.81 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEeEEEEEEecCCCCC-------------HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH
Q 003649 41 QRRILISGSIHYPRST-------------PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (805)
Q Consensus 41 k~~~l~sG~iHy~R~~-------------~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (805)
-+..++..++-|.|.. .++.++.++++++.|.|+|=+ -|+.+ +..++++.
T Consensus 87 ~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I~---------------~~a~~~l~ 149 (261)
T cd03334 87 PRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSVS---------------RIAQDLLL 149 (261)
T ss_pred CcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCccC---------------HHHHHHHH
Confidence 4678899999998853 667788899999999999865 34442 24467888
Q ss_pred HcCCEEEEccC
Q 003649 108 RVGLYAHLRIG 118 (805)
Q Consensus 108 ~~GL~VilR~G 118 (805)
++|+.++-|+.
T Consensus 150 k~gI~~v~~v~ 160 (261)
T cd03334 150 EAGITLVLNVK 160 (261)
T ss_pred HCCCEEEEecC
Confidence 89999988863
No 241
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.67 E-value=74 Score=35.82 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCEEE-----EcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003649 60 WEDLIRKAKDGGLDVID-----TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (805)
Q Consensus 60 W~~~l~k~Ka~GlN~V~-----tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (805)
-++.++++|++|++.+- ++..--.+.-.+++...+ +..+.++.|+++|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 35668899999987554 222111223334443333 5568899999999975
No 242
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=20.65 E-value=1.7e+02 Score=31.32 Aligned_cols=61 Identities=25% Similarity=0.483 Sum_probs=43.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc-----c---hHH---HHH-HHHHHcCCEEEEccCccc
Q 003649 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-----Y---DLV---RFI-KTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 56 ~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~-----~---dl~---~fl-~la~~~GL~VilR~GPYi 121 (805)
..+..++.++.+.++|+++-.. +||-.||||.+.=. . ++. ..| ++|+++||.+-.-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4677889999999999976665 89999999887411 1 111 122 567899999999998866
No 243
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=20.61 E-value=3.4e+02 Score=25.04 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=42.3
Q ss_pred CccEEEEEEEeecCCCcccccCCCCCeeeecCc-c-eEEEEEECC---EEEEEEEccc--cCce-eEEeecccccCCCCe
Q 003649 469 TSDYLWYMTSVEISSSESFLRGGQKPTLTVESA-G-HAVHVFING---QFLGSAFGTR--ENRR-FTFSGPANLRAGINK 540 (805)
Q Consensus 469 ~sgYlwY~T~v~~~~~~~~~~~g~~~~L~v~~~-~-d~~~VfVNg---~~vGs~~~~~--~~~~-~~~~~~i~l~~G~n~ 540 (805)
.-+|+-|.. |+++..... ...+++.+. . -.+.++||+ +.++++.-.. +-.. -+.+.+|.|..|.|+
T Consensus 30 ~G~~~~~~~-Vd~~~~g~y-----~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~ 103 (125)
T PF03422_consen 30 NGDWIEYNN-VDVPEAGTY-----TLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHT 103 (125)
T ss_dssp TTTEEEEEE-EEESSSEEE-----EEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEE
T ss_pred CCCEEEEEE-EeeCCCceE-----EEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeE
Confidence 346787873 443332210 112344332 3 488999999 9998875321 1111 234567788889999
Q ss_pred EEEEEecC
Q 003649 541 IALLSIAV 548 (805)
Q Consensus 541 L~lLven~ 548 (805)
|.|....-
T Consensus 104 i~l~~~~~ 111 (125)
T PF03422_consen 104 IYLVFNGG 111 (125)
T ss_dssp EEEEESSS
T ss_pred EEEEEECC
Confidence 98865443
No 244
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.61 E-value=2.7e+02 Score=30.91 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee-ccc---chHHHHHHHHHHcCC-EEEEc
Q 003649 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGS---YDLVRFIKTVQRVGL-YAHLR 116 (805)
Q Consensus 59 ~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF-~G~---~dl~~fl~la~~~GL-~VilR 116 (805)
...+.+++++++|++.|.+ +++-..|..|+- .+. ..+.+.|+.+++.|+ .|-+.
T Consensus 102 ll~~~~~~L~~aGl~~v~I----SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 102 RLARFAAELADAGLKRLNI----SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred HHHHHHHHHHHcCCCeEEE----EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 3456788999999999888 666666666653 222 256677778888887 45444
No 245
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.57 E-value=65 Score=35.80 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=65.4
Q ss_pred eEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCccc
Q 003649 43 RILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYV 121 (805)
Q Consensus 43 ~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPYi 121 (805)
.++++-+..--+. |+.|++.|..+=+.|+|.|.- +|+.-. |...|.++|+++|..++ +|.-|.-
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~p~~~ 99 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRKPPKD 99 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS--SS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccCCCcc
Confidence 4455555444444 478999999999999999985 676544 77799999999999876 5642211
Q ss_pred ccccCCCCCCeEecccCCeeeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHH
Q 003649 122 CAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYV 201 (805)
Q Consensus 122 cAEw~~GGlP~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~ 201 (805)
. +. ++. .++ .-.+++|++ .|.- ...||.+.
T Consensus 100 ~--------~~------------------------~~g---~~~------~~~~~rv~~-----vGTD----cavGK~tT 129 (301)
T PF07755_consen 100 L--------PV------------------------ASG---RIR------EVKAKRVLT-----VGTD----CAVGKMTT 129 (301)
T ss_dssp -------------------------------------S---GGG------G-SSEEEEE-----EESS----SSSSHHHH
T ss_pred c--------cc------------------------ccC---ccc------cCCCCEEEE-----EccC----ccccHHHH
Confidence 0 00 000 000 224577766 2441 23678887
Q ss_pred H-HHHHHHHcCCCCcceEecCC
Q 003649 202 N-WAAKMAVGLDTGVPWVMCKE 222 (805)
Q Consensus 202 ~-~l~~~~~~~g~~vP~~~~~~ 222 (805)
. .|.+.+++.|++.-++-..|
T Consensus 130 al~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 130 ALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHcCCCceEEecCC
Confidence 4 58888899999876655444
No 246
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=20.28 E-value=1.6e+02 Score=34.74 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=55.6
Q ss_pred cEEECCEEeEEEEEEecC----------------------CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceee
Q 003649 35 AILINGQRRILISGSIHY----------------------PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN 92 (805)
Q Consensus 35 ~f~idGk~~~l~sG~iHy----------------------~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~yd 92 (805)
+-.-.|+|.++.|-..|+ .|+.++.-++.|..-.++| =+|-| -|..+
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g-~vV~~----------aGtT~ 219 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG-VVVGT----------AGTTD 219 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc-eEEEE----------ecCCC
Confidence 344456777777777887 2345777778888888888 23333 47777
Q ss_pred ecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCC
Q 003649 93 FEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGF 130 (805)
Q Consensus 93 F~G~~dl~~fl~la~~~GL~VilR~GPYicAEw~~GGl 130 (805)
+...-|+.+.-++|+++|+++++-- -+||+
T Consensus 220 ~G~iDdi~~ia~ia~~~~i~lHVDA--------A~GG~ 249 (460)
T COG0076 220 TGSIDDIEELADIAEEYGIWLHVDA--------AFGGF 249 (460)
T ss_pred CCccCCHHHHHHHHHHcCCcEEEEc--------cccce
Confidence 7777899999999999998887763 57774
No 247
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.14 E-value=6.2e+02 Score=26.78 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=57.7
Q ss_pred CcEEECCEEeEEEEEEecCCCC---C----------------------HhHHHHHHHHHHHCCCCEEEEcccCCC-CCCC
Q 003649 34 KAILINGQRRILISGSIHYPRS---T----------------------PEMWEDLIRKAKDGGLDVIDTYVFWNG-HEPS 87 (805)
Q Consensus 34 ~~f~idGk~~~l~sG~iHy~R~---~----------------------~e~W~~~l~k~Ka~GlN~V~tYvfWn~-hEp~ 87 (805)
.-+.++|.++-+++..-..... . .+.-.+.++++| .+.+.|=.++.|.. ++..
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 3466799999999988665221 0 155677899999 78999999999963 2222
Q ss_pred CceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003649 88 PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (805)
Q Consensus 88 ~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPYi 121 (805)
| ..+..++.+.+-++|..+|+.=+|-+
T Consensus 201 p-------~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 201 P-------TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred C-------CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 2 22667778888889999999877644
No 248
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.02 E-value=2e+02 Score=29.26 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=38.2
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003649 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (805)
Q Consensus 48 G~iHy~R~~~e~W~~~l~k~Ka~GlN~V~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (805)
..+|-. .+..| .+++++++|.+.|.+..+.. ...+.++++.|+++|+.+++.
T Consensus 57 ~d~k~~--d~~~~--~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 57 ADLKTM--DAGEY--EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEeec--cchHH--HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 355544 34433 68899999999998754431 136789999999999999875
Done!