Query 003650
Match_columns 805
No_of_seqs 601 out of 2879
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:24:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003650.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1699-1702//hhsearch_pdb/003650hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 1.0 1 1 182.1 17.3 134 529-670 30-164 (169)
2 2cxk_A Camta1, calmodulin bind 1.0 1 1 179.4 8.2 88 362-455 4-91 (95)
3 4gpm_A Engineered protein OR26 1.0 1 1 173.2 15.8 131 536-674 4-135 (169)
4 3ljn_A Hypothetical protein; a 1.0 1 1 173.1 14.6 132 534-673 136-275 (364)
5 4b93_B Ankyrin repeat domain-c 1.0 1 1 172.7 16.0 137 531-675 81-218 (269)
6 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 172.1 14.5 129 537-673 133-271 (497)
7 4b93_B Ankyrin repeat domain-c 1.0 1 1 169.9 9.4 117 530-654 113-230 (269)
8 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 169.3 13.7 129 534-670 88-218 (253)
9 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 169.0 16.5 134 532-673 241-375 (437)
10 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 168.3 15.1 126 532-665 120-246 (253)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=182.12 Aligned_cols=134 Identities=22% Similarity=0.304 Sum_probs=122.1
Q ss_pred CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 9999632124599999839918999999982-999875578998099999990999999999988999872247898143
Q 003650 529 KRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL 607 (805)
Q Consensus 529 ~~~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpL 607 (805)
.+.....+.++|+.++..+... +++.|++ |++++.+|..|+||||+|+..|+.+++++|++.|+++|.+|..|+|||
T Consensus 30 vn~~d~~g~t~l~~a~~~~~~~--~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpL 107 (169)
T 4gpm_A 30 VNASDSDGRTPLHHAAENGHKE--VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 8884999898999999849999--99999831531133035799999999993979999999987699998799999899
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 598861998999999973999998889998999999699999982979999999981452384
Q 003650 608 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 670 (805)
Q Consensus 608 h~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~ 670 (805)
|+|+..|+.++|++|++.|++++. +|..|.|||++|+..|+.+++++|+++|++...
T Consensus 108 h~A~~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 108 HHAAENGHKEVVKLLISKGADVNT------SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 999985989999999986997415------699999999999986899999999987999077
No 2
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=1.00 E-value=1 Score=179.44 Aligned_cols=88 Identities=34% Similarity=0.696 Sum_probs=82.2
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCCCCEEEEEEEECCC
Q ss_conf 76404587328986689975999977788884448887479983982101140105502663799999726999983899
Q 003650 362 EHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGH 441 (805)
Q Consensus 362 ~~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~n~ 441 (805)
..++.|+||||+|||..|||||+|+|.|+.. ..+|.||||+++||++++++|+|+|++|||.+|.|+|+|+++++
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-----gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~ 78 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQ 78 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCC-----CCCEEEEECCEEEEEEEEECCEEEEEECCCCCCEEEEEEEECCE
T ss_conf 8847988978785447999999999378789-----96289999999776899679999999558887268699999990
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 75441001355798
Q 003650 442 KPISQVLNFEYRSP 455 (805)
Q Consensus 442 ~~~se~~~FeYr~~ 455 (805)
. +++.++|||++.
T Consensus 79 ~-~s~~~~FeY~~~ 91 (95)
T 2cxk_A 79 I-ISNSVVFEYKSG 91 (95)
T ss_dssp E-CSCCEEEEECCC
T ss_pred E-CCCCEEEEEECC
T ss_conf 3-488638898679
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=173.18 Aligned_cols=131 Identities=22% Similarity=0.298 Sum_probs=122.2
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 124599999839918999999982-9998755789980999999909999999999889998722478981435988619
Q 003650 536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 614 (805)
Q Consensus 536 ~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G 614 (805)
....|+.|+..|+.+ +++.|++ |+++|.+|..|+||||+|+..++.++++.|+..|++++.+|..|+||||+|+..|
T Consensus 4 lg~~L~~Aa~~G~~~--~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 4 LGKRLIEAAENGNKD--RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCC
T ss_conf 789999999958999--999999878998884999898999999849999999998315311330357999999999939
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 989999999739999988899989999996999999829799999999814523844444
Q 003650 615 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT 674 (805)
Q Consensus 615 ~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~ 674 (805)
+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|++....+..
T Consensus 82 ~~~~v~~Ll~~gadvn~------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~ 135 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNA------KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD 135 (169)
T ss_dssp CHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 79999999987699998------7999998999999859899999999869974156999
No 4
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=173.08 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHCC--CCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCC
Q ss_conf 32124599999839--918999999982-999875578998099999990999999999988999-----8722478981
Q 003650 534 PEAKDSFFELTLKS--KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS-----LDFRDKYGWT 605 (805)
Q Consensus 534 ~~~~t~L~~aa~~~--~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~-----in~~D~~G~T 605 (805)
..+.++||.|+..+ +.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+..|++ +|.+|..|+|
T Consensus 136 ~~g~t~L~~A~~~g~~~~~--~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 136 CKGQTALHWCVGLGPEYLE--MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp ESCCCHHHHHHHSCGGGHH--HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCCCHHHHHHHCCCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 8898789999974996699--99999976999736288999899999982989999999860554123555232889980
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 43598861998999999973999998889998999999699999982979999999981452384444
Q 003650 606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM 673 (805)
Q Consensus 606 pLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~ 673 (805)
|||+|+..|+.++|++|+++|++++. +|..|.|||++|+..|+.+++++|+++|++......
T Consensus 214 ~L~~A~~~g~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 275 (364)
T 3ljn_A 214 HLHWAILINWEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275 (364)
T ss_dssp TTHHHHTTTCHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCC
T ss_conf 99999975988999999986999888------799999889999983829999999974880554157
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=172.72 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=127.0
Q ss_pred CCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99632124599999839918999999982-99987557899809999999099999999998899987224789814359
Q 003650 531 TSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 609 (805)
Q Consensus 531 ~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~ 609 (805)
....+|.||||.|+..++.. ++++|+. |++++..+..|.||+|+|+..++.+++++|+..|+++|.+|..|+||||+
T Consensus 81 ~~d~~G~TpLh~A~~~g~~~--~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~ 158 (269)
T 4b93_B 81 VTSQDGSSPLHVAALHGRAD--LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY 158 (269)
T ss_dssp CCCTTSCCHHHHHHHTTCTT--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 76999999999999849699--9999986599867557899983300001272999999998799988778999999999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 886199899999997399999888999899999969999998297999999998145238444440
Q 003650 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL 675 (805)
Q Consensus 610 Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~l 675 (805)
||..|+.++|++|++.|++++. ++..|.||||+|+..|+.+++++|+++|++.+..+...
T Consensus 159 A~~~g~~~~v~~Ll~~gadvn~------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G 218 (269)
T 4b93_B 159 ACSGGHHELVALLLQHGASINA------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQ 218 (269)
T ss_dssp HHHTTCGGGHHHHHHTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred HHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9987899999999978799783------21478838999998688999999998788998869999
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=172.07 Aligned_cols=129 Identities=22% Similarity=0.181 Sum_probs=118.3
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHC-CCCCCCC------CCCCCHHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 24599999839918999999982-9998755------7899809999999---099999999998899987224789814
Q 003650 537 KDSFFELTLKSKLKEWLLERVVE-GSKTTEY------DVHGQGVIHLCAM---LGYTWAILLFSWSGLSLDFRDKYGWTA 606 (805)
Q Consensus 537 ~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~------D~~G~T~LH~Aa~---~G~~~~v~~LL~~Ga~in~~D~~G~Tp 606 (805)
.+.|+.|+..++.. .+..|++ |+++|.. |..|.||||+|+. .|+.+++++|+.+|+++|.+|..|+||
T Consensus 133 ~~~L~~A~~~g~~~--~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLL--SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 89999988635899--9999986066535777775434555058899998601564799999997499977608999959
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 3598861998999999973999998889998999999699999982979999999981452384444
Q 003650 607 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM 673 (805)
Q Consensus 607 Lh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~ 673 (805)
||+|+..|+.++|++||++||+++. +|..|.||||+|+..|+.+++++|+++|++.....+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~ 271 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGT------VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 271 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSC------CCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 9999980989899999976999878------198989799999981979999999981899889861
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=169.85 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 999632124599999839918999999982-9998755789980999999909999999999889998722478981435
Q 003650 530 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH 608 (805)
Q Consensus 530 ~~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh 608 (805)
......+.++++.++..++.. +++.|++ |++++.+|..|+||||+||..|+.+++++|+..|+++|.+|..|+||||
T Consensus 113 ~~~~~~g~t~l~~a~~~~~~~--~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh 190 (269)
T 4b93_B 113 GARNADQAVPLHLACQQGHFQ--VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190 (269)
T ss_dssp TCCCTTCCCHHHHHHHHTCHH--HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 755789998330000127299--999999879998877899999999999878999999999787997832147883899
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 9886199899999997399999888999899999969999998297
Q 003650 609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654 (805)
Q Consensus 609 ~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~ 654 (805)
+|+..|+.++|++|+++||+++. +|..|.||||+|+.+++
T Consensus 191 ~A~~~g~~~~v~~Ll~~Gad~~~------~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 191 EAVIEKHVFVVELLLLHGASVQV------LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCC------CCTTSCCSGGGSCTTCH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCC
T ss_conf 99986889999999987889988------69999999999883784
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=169.30 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHC-CC-CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32124599999839918999999982-99-98755789980999999909999999999889998722478981435988
Q 003650 534 PEAKDSFFELTLKSKLKEWLLERVVE-GS-KTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 611 (805)
Q Consensus 534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga-~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa 611 (805)
..+.++|+.|+..++.. +++.|++ ++ +++..+..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|+
T Consensus 88 ~~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 165 (253)
T 1yyh_A 88 NMGRTPLHAAVSADAQG--VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165 (253)
T ss_dssp TTSCCHHHHHHHHTCHH--HHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred CCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 99998999999869889--9999997589875456889986999998848399999999769998880999998999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf 61998999999973999998889998999999699999982979999999981452384
Q 003650 612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 670 (805)
Q Consensus 612 ~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~ 670 (805)
..|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|+++|++...
T Consensus 166 ~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 218 (253)
T 1yyh_A 166 AVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYETAKVLLDHFANRDI 218 (253)
T ss_dssp HHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 86888999999976999998------689999999999987999999999986999330
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=168.98 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=99.6
Q ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9632124599999839918999999982-999875578998099999990999999999988999872247898143598
Q 003650 532 SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610 (805)
Q Consensus 532 s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~A 610 (805)
....+.++|+.|+..++.. ++++|++ |++++..|..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|
T Consensus 241 ~~~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 318 (437)
T 1n11_A 241 ESVQGVTPLHLAAQEGHAE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 7989997999999778899--99999966999998799999799999984999999999848756788799998899999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 861998999999973999998889998999999699999982979999999981452384444
Q 003650 611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM 673 (805)
Q Consensus 611 a~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~ 673 (805)
+..|+.++|++|++.|++++. +|..|.||||+|+..|+.+++++|+++|++....+.
T Consensus 319 ~~~g~~~~v~~Ll~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~ 375 (437)
T 1n11_A 319 SHYGNIKLVKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375 (437)
T ss_dssp HHSSCSHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred HHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 986949999999966999998------899998899999987819999999977689988789
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=168.27 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=111.0
Q ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9632124599999839918999999982-999875578998099999990999999999988999872247898143598
Q 003650 532 SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610 (805)
Q Consensus 532 s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~A 610 (805)
....+.++|+.|+..++.. +++.|++ |++++..|..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|
T Consensus 120 ~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A 197 (253)
T 1yyh_A 120 RMHDGTTPLILAARLAVEG--MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197 (253)
T ss_dssp CCTTCCCHHHHHHHHTCSS--HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 6889986999998848399--99999976999888099999899999986888999999976999998689999999999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8619989999999739999988899989999996999999829799999999814
Q 003650 611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665 (805)
Q Consensus 611 a~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~g 665 (805)
+..|+.+++++|+++|++++. +|..|.||+++|+.+|+.+|+.+|....
T Consensus 198 ~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 198 AREGSYETAKVLLDHFANRDI------TDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 987999999999986999330------0248998899998858789999999886
Done!