Query 003651
Match_columns 805
No_of_seqs 339 out of 1450
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906 Phosphatidylinositol 3 100.0 3E-199 6E-204 1630.4 64.2 781 1-805 1-843 (843)
2 KOG0904 Phosphatidylinositol 3 100.0 3E-146 6E-151 1239.6 46.1 681 12-800 339-1075(1076)
3 KOG0905 Phosphoinositide 3-kin 100.0 1E-130 3E-135 1129.7 47.1 648 50-803 653-1348(1639)
4 cd00896 PI3Kc_III Phosphoinosi 100.0 1.3E-88 2.9E-93 743.2 37.1 333 472-804 2-350 (350)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 4.7E-88 1E-92 732.8 35.4 326 472-802 2-354 (354)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 5.6E-86 1.2E-90 716.4 34.1 325 471-802 1-353 (353)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 3.5E-85 7.6E-90 713.2 34.2 326 472-802 2-354 (354)
8 cd05175 PI3Kc_IA_alpha Phospho 100.0 1.7E-84 3.6E-89 705.8 31.7 327 472-802 2-366 (366)
9 cd05165 PI3Kc_I Phosphoinositi 100.0 5.8E-84 1.3E-88 706.4 32.1 327 472-802 2-366 (366)
10 cd00894 PI3Kc_IB_gamma Phospho 100.0 2E-83 4.3E-88 700.2 32.8 326 472-801 2-364 (365)
11 cd05174 PI3Kc_IA_delta Phospho 100.0 3.3E-83 7.1E-88 697.6 33.9 325 472-802 2-361 (361)
12 cd05173 PI3Kc_IA_beta Phosphoi 100.0 6.3E-83 1.4E-87 697.3 33.4 326 472-802 2-361 (362)
13 cd05166 PI3Kc_II Phosphoinosit 100.0 4.5E-82 9.8E-87 691.8 34.5 325 472-802 2-353 (353)
14 cd00891 PI3Kc Phosphoinositide 100.0 9.5E-82 2.1E-86 690.3 33.5 325 472-802 2-352 (352)
15 cd05167 PI4Kc_III_alpha Phosph 100.0 1.8E-76 3.9E-81 636.4 30.0 276 524-802 1-308 (311)
16 KOG0902 Phosphatidylinositol 4 100.0 7.3E-75 1.6E-79 680.6 40.9 472 310-802 1292-1799(1803)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 4.5E-69 9.8E-74 574.9 25.0 264 536-802 3-286 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 8.5E-66 1.9E-70 550.7 24.7 255 547-802 15-290 (293)
19 cd00892 PIKKc_ATR ATR (Ataxia 100.0 8.1E-54 1.8E-58 448.4 19.2 214 535-751 3-236 (237)
20 cd05172 PIKKc_DNA-PK DNA-depen 100.0 6.8E-54 1.5E-58 448.3 18.5 211 534-751 2-234 (235)
21 COG5032 TEL1 Phosphatidylinosi 100.0 6.2E-52 1.3E-56 534.8 30.7 512 279-803 1486-2098(2105)
22 cd00142 PI3Kc_like Phosphoinos 100.0 1.4E-52 3.1E-57 434.9 19.6 203 537-745 4-219 (219)
23 KOG0903 Phosphatidylinositol 4 100.0 7.1E-52 1.5E-56 467.7 22.5 240 562-802 587-844 (847)
24 cd05164 PIKKc Phosphoinositide 100.0 6.8E-52 1.5E-56 430.1 19.1 204 534-744 2-221 (222)
25 cd05169 PIKKc_TOR TOR (Target 100.0 8.2E-52 1.8E-56 444.3 17.6 215 534-751 2-279 (280)
26 cd05171 PIKKc_ATM Ataxia telan 100.0 2.3E-50 5.1E-55 432.2 18.1 214 535-751 3-278 (279)
27 cd00870 PI3Ka_III Phosphoinosi 100.0 1.2E-49 2.7E-54 393.8 17.1 159 279-437 1-166 (166)
28 cd00872 PI3Ka_I Phosphoinositi 100.0 1.6E-49 3.4E-54 393.9 17.8 167 287-457 2-168 (171)
29 cd05170 PIKKc_SMG1 Suppressor 100.0 1.3E-48 2.9E-53 423.6 19.3 215 534-751 2-306 (307)
30 smart00146 PI3Kc Phosphoinosit 100.0 2.1E-48 4.6E-53 399.1 17.2 184 564-753 1-200 (202)
31 PF00613 PI3Ka: Phosphoinositi 100.0 1.7E-46 3.6E-51 378.6 17.3 175 280-458 1-175 (184)
32 cd00869 PI3Ka_II Phosphoinosit 100.0 3.1E-46 6.8E-51 368.3 17.6 164 287-455 2-166 (169)
33 KOG0890 Protein kinase of the 100.0 8.6E-45 1.9E-49 447.2 33.3 424 350-804 1858-2382(2382)
34 smart00145 PI3Ka Phosphoinosit 100.0 1.6E-45 3.5E-50 370.5 18.7 169 285-457 4-173 (184)
35 PTZ00303 phosphatidylinositol 100.0 3.4E-44 7.3E-49 401.1 17.6 264 520-788 935-1326(1374)
36 cd05163 TRRAP TRansformation/t 100.0 3.2E-43 6.9E-48 371.7 17.6 216 534-751 2-252 (253)
37 PF00454 PI3_PI4_kinase: Phosp 100.0 4E-43 8.8E-48 367.1 14.6 190 562-751 1-234 (235)
38 cd00864 PI3Ka Phosphoinositide 100.0 4.9E-42 1.1E-46 335.9 15.8 151 287-437 2-152 (152)
39 KOG0892 Protein kinase ATM/Tel 100.0 1.1E-38 2.4E-43 395.1 26.6 412 325-762 2241-2733(2806)
40 cd08397 C2_PI3K_class_III C2 d 100.0 5.1E-38 1.1E-42 309.7 15.4 138 45-183 22-159 (159)
41 cd00871 PI4Ka Phosphoinositide 100.0 8.8E-35 1.9E-39 288.3 14.9 143 291-439 9-152 (175)
42 cd08398 C2_PI3K_class_I_alpha 100.0 1.2E-30 2.6E-35 256.8 16.1 117 12-148 4-124 (158)
43 PF00792 PI3K_C2: Phosphoinosi 100.0 1.4E-31 2.9E-36 260.0 5.5 132 53-195 2-142 (142)
44 cd08399 C2_PI3K_class_I_gamma 100.0 2.5E-29 5.5E-34 251.0 16.0 120 10-147 4-139 (178)
45 cd08693 C2_PI3K_class_I_beta_d 100.0 2.7E-29 5.9E-34 251.3 16.1 121 11-149 3-139 (173)
46 cd04012 C2A_PI3K_class_II C2 d 100.0 7E-29 1.5E-33 248.3 15.0 156 11-230 3-171 (171)
47 cd08380 C2_PI3K_like C2 domain 100.0 2.2E-28 4.9E-33 241.0 15.6 125 11-152 3-129 (156)
48 KOG0891 DNA-dependent protein 99.9 3E-25 6.6E-30 282.6 1.6 223 528-753 1954-2238(2341)
49 smart00142 PI3K_C2 Phosphoinos 99.8 6.8E-20 1.5E-24 167.8 7.9 64 53-116 32-95 (100)
50 KOG0889 Histone acetyltransfer 99.1 6.9E-10 1.5E-14 144.0 13.0 217 529-747 3190-3477(3550)
51 cd08409 C2B_Synaptotagmin-15 C 97.1 0.0044 9.6E-08 60.0 10.6 77 51-129 33-109 (137)
52 cd08410 C2B_Synaptotagmin-17 C 97.0 0.0055 1.2E-07 59.1 10.1 79 52-132 34-112 (135)
53 PF13575 DUF4135: Domain of un 96.9 0.0091 2E-07 67.4 13.0 135 532-687 44-178 (370)
54 cd08381 C2B_PI3K_class_II C2 d 96.9 0.01 2.2E-07 56.3 11.4 105 5-129 3-108 (122)
55 cd08392 C2A_SLP-3 C2 domain fi 96.9 0.011 2.5E-07 56.6 11.5 111 1-129 1-111 (128)
56 cd08692 C2B_Tac2-N C2 domain s 96.8 0.0031 6.8E-08 61.1 7.1 74 53-129 35-109 (135)
57 smart00239 C2 Protein kinase C 96.8 0.011 2.3E-07 51.7 10.1 73 52-130 20-92 (101)
58 cd08393 C2A_SLP-1_2 C2 domain 96.8 0.014 3E-07 55.5 11.4 76 52-129 36-111 (125)
59 cd08407 C2B_Synaptotagmin-13 C 96.8 0.0096 2.1E-07 58.0 10.5 74 53-128 38-111 (138)
60 cd04029 C2A_SLP-4_5 C2 domain 96.8 0.015 3.2E-07 55.5 11.4 75 52-128 36-110 (125)
61 cd08680 C2_Kibra C2 domain fou 96.8 0.017 3.7E-07 55.2 11.7 78 51-129 33-110 (124)
62 cd08405 C2B_Synaptotagmin-7 C2 96.6 0.021 4.5E-07 54.9 11.2 76 52-129 35-110 (136)
63 cd08696 C2_Dock-C C2 domains f 96.6 0.027 5.9E-07 57.2 12.0 66 80-147 64-135 (179)
64 cd08685 C2_RGS-like C2 domain 96.5 0.024 5.3E-07 53.5 10.8 75 52-129 31-106 (119)
65 cd08402 C2B_Synaptotagmin-1 C2 96.5 0.034 7.5E-07 53.3 12.1 74 52-127 35-108 (136)
66 cd08388 C2A_Synaptotagmin-4-11 96.5 0.039 8.5E-07 52.7 12.1 117 6-145 7-124 (128)
67 cd08406 C2B_Synaptotagmin-12 C 96.5 0.028 6.1E-07 54.5 11.1 77 51-129 34-110 (136)
68 cd08395 C2C_Munc13 C2 domain t 96.5 0.011 2.4E-07 56.1 8.1 91 52-147 19-110 (120)
69 cd08408 C2B_Synaptotagmin-14_1 96.5 0.027 5.8E-07 54.7 10.9 76 52-129 35-111 (138)
70 cd08677 C2A_Synaptotagmin-13 C 96.5 0.028 6E-07 53.4 10.6 74 52-128 31-104 (118)
71 cd00276 C2B_Synaptotagmin C2 d 96.4 0.028 6.1E-07 53.3 10.8 76 52-129 34-109 (134)
72 cd08385 C2A_Synaptotagmin-1-5- 96.4 0.039 8.5E-07 51.9 11.2 74 52-129 36-109 (124)
73 cd08387 C2A_Synaptotagmin-8 C2 96.3 0.055 1.2E-06 51.0 12.0 74 52-129 36-109 (124)
74 cd08404 C2B_Synaptotagmin-4 C2 96.3 0.04 8.7E-07 52.9 11.2 76 52-129 35-110 (136)
75 cd08384 C2B_Rabphilin_Doc2 C2 96.3 0.044 9.6E-07 52.2 11.4 74 52-127 33-106 (133)
76 cd04041 C2A_fungal C2 domain f 96.1 0.034 7.4E-07 51.5 9.2 75 52-129 22-96 (111)
77 cd04031 C2A_RIM1alpha C2 domai 96.1 0.065 1.4E-06 50.3 11.2 76 52-129 36-112 (125)
78 cd08403 C2B_Synaptotagmin-3-5- 96.1 0.063 1.4E-06 51.4 11.2 75 52-128 34-108 (134)
79 cd04028 C2B_RIM1alpha C2 domai 96.1 0.02 4.4E-07 56.3 7.8 71 52-127 50-121 (146)
80 cd08386 C2A_Synaptotagmin-7 C2 96.1 0.061 1.3E-06 50.6 10.8 74 52-129 36-110 (125)
81 cd08694 C2_Dock-A C2 domains f 96.0 0.027 5.8E-07 57.8 8.8 67 80-147 63-134 (196)
82 PF00168 C2: C2 domain; Inter 96.0 0.063 1.4E-06 45.8 9.8 67 52-124 19-85 (85)
83 cd08688 C2_KIAA0528-like C2 do 96.0 0.042 9E-07 50.9 9.2 71 52-129 20-91 (110)
84 cd04030 C2C_KIAA1228 C2 domain 96.0 0.087 1.9E-06 49.6 11.4 76 52-129 36-113 (127)
85 cd04009 C2B_Munc13-like C2 dom 95.9 0.11 2.3E-06 49.9 11.9 76 52-127 36-113 (133)
86 cd04032 C2_Perforin C2 domain 95.9 0.068 1.5E-06 51.3 10.5 69 52-128 47-115 (127)
87 cd08521 C2A_SLP C2 domain firs 95.9 0.096 2.1E-06 49.0 11.2 76 52-129 35-110 (123)
88 cd08390 C2A_Synaptotagmin-15-1 95.9 0.062 1.3E-06 50.3 9.9 74 52-129 35-108 (123)
89 PF14429 DOCK-C2: C2 domain in 95.8 0.043 9.3E-07 55.8 9.3 64 81-146 70-137 (184)
90 cd08389 C2A_Synaptotagmin-14_1 95.8 0.092 2E-06 49.8 10.9 74 52-130 36-110 (124)
91 cd04037 C2E_Ferlin C2 domain f 95.8 0.075 1.6E-06 50.4 10.2 70 52-128 20-89 (124)
92 cd08679 C2_DOCK180_related C2 95.7 0.061 1.3E-06 54.5 9.7 73 74-147 56-134 (178)
93 PLN02222 phosphoinositide phos 95.7 0.057 1.2E-06 64.0 10.7 86 51-145 477-563 (581)
94 PLN02952 phosphoinositide phos 95.7 0.06 1.3E-06 64.0 10.8 85 51-144 495-580 (599)
95 cd00275 C2_PLC_like C2 domain 95.6 0.13 2.7E-06 48.4 11.0 84 52-143 24-108 (128)
96 cd08682 C2_Rab11-FIP_classI C2 95.6 0.082 1.8E-06 50.0 9.6 71 52-128 19-91 (126)
97 cd00030 C2 C2 domain. The C2 d 95.6 0.1 2.2E-06 45.0 9.5 73 51-131 18-90 (102)
98 cd04036 C2_cPLA2 C2 domain pre 95.5 0.09 2E-06 49.2 9.4 70 52-128 20-89 (119)
99 cd04044 C2A_Tricalbin-like C2 95.3 0.05 1.1E-06 50.8 7.1 70 52-129 23-92 (124)
100 PLN02230 phosphoinositide phos 95.1 0.095 2.1E-06 62.3 10.2 86 51-145 494-580 (598)
101 cd04051 C2_SRC2_like C2 domain 95.1 0.14 3E-06 48.3 9.3 73 52-129 20-94 (125)
102 cd04050 C2B_Synaptotagmin-like 95.0 0.15 3.3E-06 46.6 9.2 67 51-129 19-85 (105)
103 cd04045 C2C_Tricalbin-like C2 95.0 0.16 3.5E-06 47.9 9.6 81 52-141 21-101 (120)
104 cd04019 C2C_MCTP_PRT_plant C2 95.0 0.19 4.1E-06 49.6 10.2 70 51-129 19-89 (150)
105 cd04035 C2A_Rabphilin_Doc2 C2 95.0 0.33 7.2E-06 45.5 11.6 73 52-127 35-108 (123)
106 cd08382 C2_Smurf-like C2 domai 94.9 0.21 4.5E-06 47.2 10.1 69 52-130 20-90 (123)
107 cd04039 C2_PSD C2 domain prese 94.9 0.091 2E-06 48.8 7.4 69 53-129 26-94 (108)
108 cd04033 C2_NEDD4_NEDD4L C2 dom 94.9 0.2 4.4E-06 47.5 10.0 73 52-129 20-94 (133)
109 cd04022 C2A_MCTP_PRT_plant C2 94.8 0.15 3.3E-06 48.2 8.8 70 52-127 20-90 (127)
110 cd04018 C2C_Ferlin C2 domain t 94.8 0.11 2.3E-06 51.5 7.9 70 52-129 34-103 (151)
111 cd04042 C2A_MCTP_PRT C2 domain 94.8 0.22 4.7E-06 46.7 9.7 68 52-128 20-87 (121)
112 cd04021 C2_E3_ubiquitin_ligase 94.7 0.26 5.7E-06 46.7 10.2 66 52-127 21-86 (125)
113 cd08375 C2_Intersectin C2 doma 94.7 0.27 5.8E-06 47.6 10.3 69 52-129 35-103 (136)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 94.6 0.24 5.2E-06 49.4 9.9 74 52-127 47-121 (162)
115 PLN02223 phosphoinositide phos 94.5 0.2 4.2E-06 58.8 10.5 86 51-145 433-519 (537)
116 cd08376 C2B_MCTP_PRT C2 domain 94.5 0.34 7.3E-06 44.9 10.2 69 52-129 20-88 (116)
117 cd04026 C2_PKC_alpha_gamma C2 94.5 0.45 9.8E-06 45.2 11.2 73 52-127 33-105 (131)
118 cd04011 C2B_Ferlin C2 domain s 94.4 0.16 3.5E-06 46.9 7.7 72 52-129 20-92 (111)
119 cd04040 C2D_Tricalbin-like C2 94.3 0.34 7.3E-06 44.8 9.8 70 52-129 19-88 (115)
120 cd04025 C2B_RasA1_RasA4 C2 dom 94.3 0.39 8.5E-06 45.1 10.4 69 52-129 20-88 (123)
121 cd08400 C2_Ras_p21A1 C2 domain 94.3 0.34 7.5E-06 46.0 9.9 70 52-130 21-90 (126)
122 cd08678 C2_C21orf25-like C2 do 94.2 0.3 6.6E-06 46.2 9.4 70 52-129 17-86 (126)
123 cd08373 C2A_Ferlin C2 domain f 94.2 0.38 8.2E-06 45.5 10.0 69 52-127 14-82 (127)
124 cd08379 C2D_MCTP_PRT_plant C2 94.0 0.43 9.2E-06 45.8 10.0 68 51-128 22-95 (126)
125 cd08697 C2_Dock-D C2 domains f 94.0 0.25 5.5E-06 50.5 8.8 66 79-145 65-139 (185)
126 cd04014 C2_PKC_epsilon C2 doma 94.0 0.2 4.3E-06 47.8 7.6 69 51-129 33-101 (132)
127 cd04792 LanM-like LanM-like pr 93.9 0.49 1.1E-05 59.0 13.1 120 544-687 99-218 (825)
128 cd08690 C2_Freud-1 C2 domain f 93.9 0.62 1.3E-05 46.4 11.1 77 51-129 23-106 (155)
129 cd04048 C2A_Copine C2 domain f 93.8 0.19 4.1E-06 47.1 7.0 75 52-129 20-99 (120)
130 cd04043 C2_Munc13_fungal C2 do 93.7 0.55 1.2E-05 44.2 10.0 70 52-127 21-90 (126)
131 cd04024 C2A_Synaptotagmin-like 93.5 0.55 1.2E-05 44.1 9.7 68 53-129 24-91 (128)
132 PLN02228 Phosphoinositide phos 93.4 0.48 1E-05 56.2 11.0 85 51-144 456-542 (567)
133 cd08681 C2_fungal_Inn1p-like C 93.3 0.6 1.3E-05 43.4 9.5 68 52-129 21-89 (118)
134 cd04049 C2_putative_Elicitor-r 93.2 0.72 1.6E-05 43.4 10.0 72 52-129 21-93 (124)
135 cd08695 C2_Dock-B C2 domains f 92.9 0.26 5.6E-06 50.6 6.8 67 80-147 63-132 (189)
136 cd04038 C2_ArfGAP C2 domain pr 92.9 0.36 7.9E-06 47.4 7.6 66 52-127 21-86 (145)
137 cd04052 C2B_Tricalbin-like C2 92.8 0.39 8.4E-06 44.5 7.4 67 53-128 13-79 (111)
138 cd04010 C2B_RasA3 C2 domain se 92.8 0.36 7.8E-06 47.6 7.5 77 52-129 18-106 (148)
139 cd08378 C2B_MCTP_PRT_plant C2 92.7 0.85 1.8E-05 43.1 9.7 68 52-129 16-83 (121)
140 KOG0169 Phosphoinositide-speci 92.6 0.37 8.1E-06 57.9 8.5 107 18-145 618-726 (746)
141 cd08391 C2A_C2C_Synaptotagmin_ 92.5 0.49 1.1E-05 43.9 7.7 68 52-129 27-94 (121)
142 cd04047 C2B_Copine C2 domain s 92.4 0.42 9.2E-06 43.8 7.1 74 52-129 20-97 (110)
143 cd04016 C2_Tollip C2 domain pr 92.4 0.47 1E-05 45.2 7.5 80 52-145 21-101 (121)
144 cd08377 C2C_MCTP_PRT C2 domain 92.4 1.1 2.3E-05 41.6 9.8 68 52-129 21-88 (119)
145 cd08675 C2B_RasGAP C2 domain s 92.3 0.5 1.1E-05 45.7 7.6 75 52-128 18-104 (137)
146 cd08374 C2F_Ferlin C2 domain s 92.0 0.45 9.8E-06 46.2 7.0 77 51-128 23-119 (133)
147 cd08676 C2A_Munc13-like C2 dom 91.8 1.1 2.4E-05 44.4 9.6 51 72-129 91-141 (153)
148 cd04054 C2A_Rasal1_RasA4 C2 do 91.6 1.5 3.1E-05 41.3 9.9 68 52-128 20-87 (121)
149 cd04015 C2_plant_PLD C2 domain 91.5 0.71 1.5E-05 45.9 7.9 68 50-127 55-122 (158)
150 KOG1028 Ca2+-dependent phospho 90.8 0.86 1.9E-05 52.5 8.8 75 49-125 315-389 (421)
151 cd08686 C2_ABR C2 domain in th 90.7 1.1 2.3E-05 42.7 7.9 69 53-127 15-90 (118)
152 cd08691 C2_NEDL1-like C2 domai 90.4 1 2.2E-05 43.8 7.7 73 52-129 20-103 (137)
153 cd04046 C2_Calpain C2 domain p 89.9 2.5 5.3E-05 40.1 9.7 67 52-129 23-89 (126)
154 cd04017 C2D_Ferlin C2 domain f 89.7 1.7 3.6E-05 41.7 8.5 69 52-126 21-95 (135)
155 cd08383 C2A_RasGAP C2 domain ( 88.8 4 8.8E-05 37.5 10.1 71 52-129 17-87 (117)
156 cd04027 C2B_Munc13 C2 domain s 88.4 3.4 7.5E-05 39.1 9.5 66 53-128 22-98 (127)
157 cd04013 C2_SynGAP_like C2 doma 88.0 2.6 5.6E-05 41.6 8.6 68 54-130 28-99 (146)
158 PF14186 Aida_C2: Cytoskeletal 88.0 2.1 4.5E-05 42.2 7.8 89 53-145 31-123 (147)
159 cd08401 C2A_RasA2_RasA3 C2 dom 87.9 1.8 4E-05 40.8 7.3 68 52-128 21-88 (121)
160 cd08394 C2A_Munc13 C2 domain f 83.4 3.6 7.8E-05 39.7 6.8 62 56-129 23-84 (127)
161 PLN03008 Phospholipase D delta 83.3 2.5 5.3E-05 52.2 7.0 81 50-145 74-154 (868)
162 TIGR03843 conserved hypothetic 81.8 1.2 2.7E-05 47.1 3.3 99 593-691 64-178 (253)
163 KOG1030 Predicted Ca2+-depende 77.9 4.9 0.00011 40.4 5.9 66 53-128 27-92 (168)
164 COG5038 Ca2+-dependent lipid-b 72.9 11 0.00024 47.8 8.3 87 18-127 438-524 (1227)
165 COG0661 AarF Predicted unusual 72.8 2.3 4.9E-05 50.3 2.4 85 596-684 225-312 (517)
166 TIGR03724 arch_bud32 Kae1-asso 70.9 23 0.00049 35.5 8.9 73 600-684 60-136 (199)
167 KOG1028 Ca2+-dependent phospho 70.8 27 0.00059 40.4 10.5 77 52-132 187-263 (421)
168 PRK14879 serine/threonine prot 70.7 34 0.00073 34.5 10.2 76 600-684 62-141 (211)
169 cd08684 C2A_Tac2-N C2 domain f 70.4 7.2 0.00016 35.4 4.4 73 51-129 19-91 (103)
170 KOG0608 Warts/lats-like serine 66.9 8.4 0.00018 46.2 5.2 158 635-795 724-923 (1034)
171 cd05603 STKc_SGK2 Catalytic do 63.4 62 0.0013 35.0 11.1 24 661-684 120-143 (321)
172 PRK04750 ubiB putative ubiquin 62.9 4.2 9.2E-05 48.4 2.0 24 661-684 284-311 (537)
173 PRK10359 lipopolysaccharide co 61.9 4.9 0.00011 42.7 2.1 59 613-684 121-181 (232)
174 cd05151 ChoK Choline Kinase (C 60.8 6.7 0.00015 38.0 2.7 25 660-685 111-135 (170)
175 cd08689 C2_fungal_Pkc1p C2 dom 60.6 25 0.00055 33.0 6.2 44 81-130 43-86 (109)
176 TIGR01982 UbiB 2-polyprenylphe 60.4 6.3 0.00014 45.7 2.8 24 661-684 281-304 (437)
177 cd05590 STKc_nPKC_eta Catalyti 58.4 75 0.0016 34.5 10.7 24 661-684 120-143 (320)
178 cd05145 RIO1_like RIO kinase f 57.0 7.4 0.00016 39.3 2.4 76 602-684 84-164 (190)
179 PF10358 NT-C2: N-terminal C2 56.6 72 0.0015 30.5 9.1 91 17-130 8-104 (143)
180 cd05147 RIO1_euk RIO kinase fa 54.7 7.3 0.00016 39.7 1.8 27 658-685 137-165 (190)
181 PF07162 B9-C2: Ciliary basal 54.4 87 0.0019 31.4 9.5 90 51-145 15-116 (168)
182 cd06625 STKc_MEKK3_like Cataly 54.4 2.5E+02 0.0054 28.8 13.4 24 661-684 128-151 (263)
183 KOG0616 cAMP-dependent protein 54.1 7.7 0.00017 42.6 1.9 58 650-707 153-217 (355)
184 COG3642 Mn2+-dependent serine/ 53.7 38 0.00083 35.2 6.7 127 598-740 60-191 (204)
185 KOG0696 Serine/threonine prote 53.5 30 0.00064 39.8 6.4 73 52-127 200-272 (683)
186 PLN03200 cellulose synthase-in 52.9 23 0.00051 48.2 6.4 82 52-141 1998-2080(2102)
187 cd05069 PTKc_Yes Catalytic dom 51.9 1.2E+02 0.0027 31.2 10.7 81 600-684 65-149 (260)
188 cd05602 STKc_SGK1 Catalytic do 51.9 1.3E+02 0.0028 32.6 11.3 24 661-684 120-143 (325)
189 PF03130 HEAT_PBS: PBS lyase H 51.5 24 0.00053 24.4 3.5 26 372-400 1-26 (27)
190 PRK10271 thiK thiamine kinase; 50.7 13 0.00028 38.3 2.9 35 655-690 76-110 (188)
191 cd05144 RIO2_C RIO kinase fami 50.2 15 0.00032 37.1 3.3 74 603-688 99-176 (198)
192 cd05604 STKc_SGK3 Catalytic do 48.9 1.8E+02 0.0038 31.6 11.7 24 661-684 120-143 (325)
193 cd05088 PTKc_Tie2 Catalytic do 48.8 3.4E+02 0.0074 28.9 13.8 26 661-686 148-173 (303)
194 cd05053 PTKc_FGFR Catalytic do 48.3 2.9E+02 0.0064 28.9 13.0 25 661-685 156-180 (293)
195 cd05627 STKc_NDR2 Catalytic do 46.8 1.6E+02 0.0034 32.5 11.1 25 661-685 125-149 (360)
196 cd05616 STKc_cPKC_beta Catalyt 46.1 1.9E+02 0.0042 31.2 11.4 25 661-685 125-149 (323)
197 PRK05231 homoserine kinase; Pr 44.5 47 0.001 36.2 6.3 70 658-732 189-258 (319)
198 cd05119 RIO RIO kinase family, 43.5 16 0.00035 36.1 2.3 26 660-686 138-163 (187)
199 TIGR02172 Fb_sc_TIGR02172 Fibr 43.4 17 0.00036 38.2 2.5 26 660-686 157-183 (226)
200 KOG0612 Rho-associated, coiled 43.2 41 0.00088 43.2 6.0 49 661-709 199-254 (1317)
201 cd05575 STKc_SGK Catalytic dom 42.1 2.5E+02 0.0053 30.4 11.5 24 661-684 120-143 (323)
202 PTZ00267 NIMA-related protein 41.7 2.4E+02 0.0051 32.9 11.9 25 661-685 193-217 (478)
203 PRK01723 3-deoxy-D-manno-octul 41.6 20 0.00042 38.0 2.7 63 613-684 124-189 (239)
204 cd05573 STKc_ROCK_NDR_like Cat 41.4 1.5E+02 0.0032 32.3 9.7 25 661-685 125-149 (350)
205 PF06293 Kdo: Lipopolysacchari 41.4 46 0.00099 34.2 5.3 98 578-684 57-168 (206)
206 cd05574 STKc_phototropin_like 41.4 4.7E+02 0.01 27.9 13.5 27 660-686 126-152 (316)
207 cd05586 STKc_Sck1_like Catalyt 41.3 2.3E+02 0.005 30.7 11.1 24 661-684 120-143 (330)
208 PRK12274 serine/threonine prot 40.7 22 0.00047 37.6 2.7 31 655-685 107-140 (218)
209 cd05608 STKc_GRK1 Catalytic do 40.7 2.7E+02 0.0059 29.2 11.3 25 661-685 121-145 (280)
210 cd08224 STKc_Nek6_Nek7 Catalyt 40.3 4.2E+02 0.0091 27.1 12.9 24 661-684 130-153 (267)
211 TIGR00938 thrB_alt homoserine 40.1 67 0.0014 35.0 6.6 29 656-684 187-215 (307)
212 cd05626 STKc_LATS2 Catalytic d 39.5 2.5E+02 0.0053 31.4 11.2 83 598-684 63-148 (381)
213 cd05085 PTKc_Fer Catalytic dom 39.1 4E+02 0.0086 27.0 12.0 25 661-685 117-141 (250)
214 cd05042 PTKc_Aatyk Catalytic d 38.9 4.6E+02 0.0099 27.1 12.6 29 657-685 118-148 (269)
215 cd06638 STKc_myosinIIIA Cataly 38.6 55 0.0012 34.4 5.5 25 661-685 148-172 (286)
216 cd05153 HomoserineK_II Homoser 38.6 55 0.0012 35.1 5.6 29 656-684 175-203 (296)
217 cd05628 STKc_NDR1 Catalytic do 38.2 2.5E+02 0.0054 31.0 11.0 24 661-684 125-148 (363)
218 cd05588 STKc_aPKC Catalytic do 38.1 2.9E+02 0.0064 30.0 11.4 82 600-685 60-144 (329)
219 cd05070 PTKc_Fyn_Yrk Catalytic 37.6 2.5E+02 0.0054 28.9 10.3 83 599-685 64-150 (260)
220 PF07035 Mic1: Colon cancer-as 37.5 55 0.0012 33.1 4.9 76 356-431 61-146 (167)
221 PF01636 APH: Phosphotransfera 37.3 17 0.00037 36.6 1.4 30 655-684 165-195 (239)
222 cd06614 STKc_PAK Catalytic dom 37.3 3E+02 0.0065 28.8 11.0 28 658-685 135-164 (286)
223 KOG0598 Ribosomal protein S6 k 37.1 17 0.00036 40.9 1.3 33 652-684 136-172 (357)
224 cd05156 ChoK_euk Choline Kinas 36.8 31 0.00067 37.3 3.3 35 654-688 177-215 (302)
225 cd05034 PTKc_Src_like Catalyti 36.6 2.4E+02 0.0053 28.9 10.0 26 660-685 126-151 (261)
226 PF10366 Vps39_1: Vacuolar sor 35.7 51 0.0011 30.8 4.2 74 316-389 7-98 (108)
227 cd05617 STKc_aPKC_zeta Catalyt 35.2 4.1E+02 0.0089 28.8 11.9 25 661-685 120-144 (327)
228 cd05154 ACAD10_11_like Acyl-Co 35.2 28 0.00061 35.0 2.6 29 656-684 174-204 (223)
229 cd05630 STKc_GRK6 Catalytic do 35.2 3.8E+02 0.0082 28.3 11.4 25 661-685 126-150 (285)
230 cd06656 STKc_PAK3 Catalytic do 34.3 4.2E+02 0.0091 28.1 11.6 44 661-704 139-188 (297)
231 PF06702 DUF1193: Protein of u 34.2 93 0.002 32.9 6.1 109 644-766 88-199 (221)
232 PF06176 WaaY: Lipopolysacchar 33.4 33 0.00072 36.4 2.7 129 542-684 37-181 (229)
233 cd05039 PTKc_Csk_like Catalyti 33.3 4.8E+02 0.01 26.6 11.5 73 612-686 77-151 (256)
234 cd05598 STKc_LATS Catalytic do 33.1 59 0.0013 36.1 4.9 68 613-684 79-148 (376)
235 PF13646 HEAT_2: HEAT repeats; 32.9 37 0.00081 29.1 2.6 32 368-402 43-74 (88)
236 cd05594 STKc_PKB_alpha Catalyt 32.6 4.7E+02 0.01 28.2 11.9 27 658-684 115-143 (325)
237 KOG0603 Ribosomal protein S6 k 32.4 30 0.00065 41.5 2.4 29 660-688 438-467 (612)
238 cd05577 STKc_GRK Catalytic dom 32.2 5.2E+02 0.011 26.9 11.8 26 660-685 118-143 (277)
239 KOG0667 Dual-specificity tyros 32.0 1.5E+02 0.0032 35.9 8.0 113 566-683 218-337 (586)
240 cd05571 STKc_PKB Catalytic dom 31.4 4.1E+02 0.0088 28.7 11.1 24 661-684 119-142 (323)
241 cd06637 STKc_TNIK Catalytic do 31.4 5.9E+02 0.013 26.1 16.5 44 661-704 135-184 (272)
242 cd05625 STKc_LATS1 Catalytic d 31.1 4.2E+02 0.0091 29.4 11.4 82 599-684 64-148 (382)
243 cd05607 STKc_GRK7 Catalytic do 30.9 5.5E+02 0.012 26.8 11.7 28 658-685 114-143 (277)
244 cd06607 STKc_TAO Catalytic dom 30.7 1.9E+02 0.0042 30.8 8.3 44 661-704 139-184 (307)
245 PTZ00426 cAMP-dependent protei 30.7 64 0.0014 35.6 4.7 25 661-685 155-179 (340)
246 cd05033 PTKc_EphR Catalytic do 30.5 6.1E+02 0.013 26.0 12.3 26 660-685 129-154 (266)
247 cd05120 APH_ChoK_like Aminogly 30.4 44 0.00095 30.6 2.8 25 661-685 113-137 (155)
248 cd06635 STKc_TAO1 Catalytic do 30.3 2.7E+02 0.006 29.9 9.5 45 661-705 149-195 (317)
249 cd08223 STKc_Nek4 Catalytic do 30.1 6E+02 0.013 25.8 13.0 25 660-684 125-149 (257)
250 smart00090 RIO RIO-like kinase 29.8 34 0.00075 36.1 2.2 82 599-685 112-196 (237)
251 KOG0605 NDR and related serine 29.5 2E+02 0.0043 34.3 8.3 27 662-688 266-292 (550)
252 TIGR01767 MTRK 5-methylthiorib 29.1 2.1E+02 0.0045 32.8 8.3 27 658-685 194-220 (370)
253 COG0510 ycfN Thiamine kinase a 28.6 45 0.00097 36.2 2.9 34 656-689 153-186 (269)
254 cd05155 APH_ChoK_like_1 Unchar 28.5 43 0.00093 34.9 2.7 32 655-686 163-195 (235)
255 cd05100 PTKc_FGFR3 Catalytic d 28.1 7.1E+02 0.015 26.9 12.3 25 661-685 158-182 (334)
256 cd06631 STKc_YSK4 Catalytic do 28.0 5.7E+02 0.012 26.2 11.1 26 660-685 125-150 (265)
257 cd05618 STKc_aPKC_iota Catalyt 28.0 6.8E+02 0.015 27.1 12.1 24 661-684 120-143 (329)
258 cd06608 STKc_myosinIII_like Ca 27.3 6.8E+02 0.015 25.5 12.1 25 661-685 137-161 (275)
259 cd06634 STKc_TAO2 Catalytic do 27.3 2.7E+02 0.0058 29.8 8.7 46 661-706 139-186 (308)
260 cd05157 ETNK_euk Ethanolamine 27.0 52 0.0011 33.9 2.9 31 655-685 169-200 (235)
261 cd05593 STKc_PKB_gamma Catalyt 26.8 5.2E+02 0.011 28.0 11.0 24 661-684 119-142 (328)
262 cd05597 STKc_DMPK_like Catalyt 26.7 4.7E+02 0.01 28.4 10.6 46 661-706 126-178 (331)
263 cd05581 STKc_PDK1 Catalytic do 26.4 30 0.00065 35.9 1.0 26 660-685 125-150 (280)
264 KOG0594 Protein kinase PCTAIRE 26.2 42 0.00092 37.4 2.2 63 635-702 116-181 (323)
265 PF03701 UPF0181: Uncharacteri 26.1 1E+02 0.0022 25.0 3.7 42 745-786 3-45 (51)
266 cd05587 STKc_cPKC Catalytic do 26.1 36 0.00077 37.0 1.6 24 661-684 125-148 (324)
267 KOG1328 Synaptic vesicle prote 25.5 1.1E+02 0.0024 37.5 5.4 93 74-175 181-324 (1103)
268 KOG0690 Serine/threonine prote 25.4 41 0.0009 37.6 1.9 44 661-704 292-341 (516)
269 KOG0694 Serine/threonine prote 25.4 5.8E+02 0.013 31.5 11.3 83 595-684 428-515 (694)
270 PF12755 Vac14_Fab1_bd: Vacuol 25.2 80 0.0017 28.9 3.4 32 369-400 40-74 (97)
271 KOG2171 Karyopherin (importin) 25.1 5.8E+02 0.013 33.1 11.7 32 366-397 442-477 (1075)
272 KOG0610 Putative serine/threon 24.6 48 0.001 38.1 2.2 86 595-686 136-228 (459)
273 cd05096 PTKc_DDR1 Catalytic do 24.2 8.4E+02 0.018 25.7 11.8 24 661-684 162-185 (304)
274 cd05609 STKc_MAST Catalytic do 23.9 47 0.001 35.6 2.0 25 660-684 124-148 (305)
275 PF01163 RIO1: RIO1 family; I 23.9 54 0.0012 33.7 2.3 83 599-688 70-157 (188)
276 PRK11768 serine/threonine prot 23.8 1.5E+02 0.0032 32.8 5.9 66 654-731 194-259 (325)
277 PHA03390 pk1 serine/threonine- 23.6 4.7E+02 0.01 27.2 9.6 92 610-705 84-180 (267)
278 KOG1242 Protein containing ada 23.3 5.1E+02 0.011 31.3 10.3 108 334-441 267-409 (569)
279 cd05073 PTKc_Hck Catalytic dom 23.3 6.8E+02 0.015 25.6 10.6 26 660-685 125-150 (260)
280 PF00069 Pkinase: Protein kina 23.0 33 0.00072 35.2 0.6 133 564-704 26-171 (260)
281 TIGR02721 ycfN_thiK thiamine k 22.9 61 0.0013 34.1 2.6 32 657-689 147-178 (256)
282 cd05632 STKc_GRK5 Catalytic do 22.8 8.9E+02 0.019 25.3 11.9 28 658-685 121-150 (285)
283 cd05614 STKc_MSK2_N N-terminal 22.8 45 0.00097 36.3 1.6 24 661-684 129-152 (332)
284 cd05118 STKc_CMGC Catalytic do 22.6 1.4E+02 0.0031 30.9 5.3 25 661-685 122-146 (283)
285 cd06657 STKc_PAK4 Catalytic do 22.5 1.1E+02 0.0023 32.7 4.5 26 660-685 139-164 (292)
286 PRK05114 hypothetical protein; 22.1 1.3E+02 0.0028 25.1 3.6 44 745-788 3-47 (59)
287 COG3140 Uncharacterized protei 22.0 1.2E+02 0.0026 25.1 3.3 45 744-788 2-47 (60)
288 cd06640 STKc_MST4 Catalytic do 21.6 55 0.0012 34.4 1.9 25 660-684 124-148 (277)
289 cd05067 PTKc_Lck_Blk Catalytic 21.5 8.8E+02 0.019 24.7 11.5 25 661-685 126-150 (260)
290 cd05610 STKc_MASTL Catalytic d 21.4 8.6E+02 0.019 29.8 12.4 24 661-684 128-151 (669)
291 cd05152 MPH2' Macrolide 2'-Pho 21.4 67 0.0015 34.8 2.6 28 657-684 186-214 (276)
292 cd06633 STKc_TAO3 Catalytic do 21.3 4.3E+02 0.0092 28.4 8.8 46 661-706 145-192 (313)
293 cd07875 STKc_JNK1 Catalytic do 21.1 1.2E+02 0.0027 33.4 4.7 25 661-685 150-174 (364)
294 cd05099 PTKc_FGFR4 Catalytic d 21.1 1E+03 0.022 25.3 13.7 25 661-685 158-182 (314)
295 PF13646 HEAT_2: HEAT repeats; 21.0 1.2E+02 0.0026 25.9 3.7 30 368-400 12-41 (88)
296 COG5096 Vesicle coat complex, 21.0 1.5E+02 0.0032 37.0 5.5 80 323-403 54-140 (757)
297 TIGR02906 spore_CotS spore coa 20.9 70 0.0015 34.5 2.6 28 656-684 187-214 (313)
298 cd05585 STKc_YPK1_like Catalyt 20.8 54 0.0012 35.4 1.7 24 661-684 117-140 (312)
299 PF01633 Choline_kinase: Choli 20.5 55 0.0012 33.4 1.6 29 656-684 143-172 (211)
300 PF07804 HipA_C: HipA-like C-t 20.4 98 0.0021 26.8 2.9 30 642-671 37-66 (79)
301 cd05071 PTKc_Src Catalytic dom 20.3 9.5E+02 0.021 24.7 11.7 25 661-685 126-150 (262)
302 KOG0592 3-phosphoinositide-dep 20.3 64 0.0014 38.4 2.2 33 652-684 185-221 (604)
303 cd05150 APH Aminoglycoside 3'- 20.3 80 0.0017 32.9 2.8 28 657-684 164-191 (244)
304 cd07862 STKc_CDK6 Catalytic do 20.3 48 0.0011 34.9 1.2 24 661-684 134-157 (290)
305 PF15625 CC2D2AN-C2: CC2D2A N- 20.2 3E+02 0.0065 27.6 6.8 73 53-133 35-109 (168)
306 PLN00034 mitogen-activated pro 20.0 48 0.001 36.5 1.1 24 661-684 192-215 (353)
307 PHA00451 protein kinase 20.0 1.3E+02 0.0028 32.9 4.2 37 642-680 174-212 (362)
No 1
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-199 Score=1630.44 Aligned_cols=781 Identities=54% Similarity=0.895 Sum_probs=729.9
Q ss_pred CCCCeEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC
Q 003651 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (805)
Q Consensus 1 m~~~~~~~~~s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~ 80 (805)
|+-+.|+||+||||+.||++||++|||..+ +.+|.++. .++++++.++++|+||+|..|+|.+.|+.|+|++|+
T Consensus 1 M~~~~f~f~~Scdl~~~v~vKi~~leg~~~-~~~p~~~~-----~~l~~e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~ 74 (843)
T KOG0906|consen 1 MGAEKFSFCYSCDLDINVQVKIGSLEGKRP-LLNPMLKL-----IGLFQETSSDLYVTCQVFAEGKPFALPVRTSYKAFS 74 (843)
T ss_pred CCcceeEEEeeccCCcceEEEEEeeccccc-ccChHHHH-----HhhhcccchhhhheeeeeccCCcccCCccccccccC
Confidence 888999999999999999999999999988 56887775 899999999999999999999999999999999999
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecCCccccccceeeeeecCCCCCCCCCCCCCCC
Q 003651 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGK 160 (805)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~ 160 (805)
+.++|||||+|||+|+||+++|+|++|||++++++...+||+++++||+++|.||+|.++|++|+++++||+.++..+
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~~~-- 152 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTSSS-- 152 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886522
Q ss_pred CCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCC--CceEEEEEeCCCCceeEEecCCCCCCC
Q 003651 161 VPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGN--SYLYLVVDFGRLEHRVVFQDSGANFLL 238 (805)
Q Consensus 161 ~~~~~~~~~~rle~l~~~~~~g~~~~~~wlD~~~~~~i~~~~~~~~~~~~~--~~~~L~Iefp~f~~pVvy~~~~~~~~~ 238 (805)
..++||+||+|++|||++|++++|+|||+++|++|+.+++ ..+..+ .-.++.|+|-. .+||+|.+.. ..
T Consensus 153 ---~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~~--~~k~~Sm~~l~~v~id~~~-~~~v~~~~~~---~~ 223 (843)
T KOG0906|consen 153 ---TSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMINE--SWKHSSMLELPCVKIDFKE-YGPVYYEKSM---DV 223 (843)
T ss_pred ---chhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhhh--cccccceeEEeEEEeeccc-ceeeEEecCc---cc
Confidence 2689999999999999999999999999999999999973 344433 12245555544 6888888761 23
Q ss_pred CCCccCCCcceeecCCCCCCCCccHHHHHHHHhhhccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHh
Q 003651 239 PAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFS 318 (805)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~ 318 (805)
.+|+.....+++++|||...+||+|.||++|+||+|+|++|+|+||+...||+|+.|++|||.++||-|||+++||||||
T Consensus 224 ~~p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~y 303 (843)
T KOG0906|consen 224 STPINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFRYY 303 (843)
T ss_pred ccccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhhHH
Confidence 44666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 003651 319 LMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQA 398 (805)
Q Consensus 319 l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQa 398 (805)
|+++++||+|||+||+|.+++|++||++||.+|++++++|||||||+.|.++.||+|||++|++|+|++|++||+|||||
T Consensus 304 L~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqa 383 (843)
T KOG0906|consen 304 LTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQA 383 (843)
T ss_pred HhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccc----c----------c-------------------------------chhHHHHHHHHhhcCcchhhHHhhhhhh
Q 003651 399 LRFER----S----------D-------------------------------KSRLSQFLVQRSSHNIELASFLRWYVSV 433 (805)
Q Consensus 399 LkyE~----~----------~-------------------------------~s~L~~fLi~ra~~n~~i~~~l~W~L~~ 433 (805)
||||. . . .|+||+|||+||+.|+++|++||||+++
T Consensus 384 l~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~ 463 (843)
T KOG0906|consen 384 LKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKV 463 (843)
T ss_pred HHHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEE
Confidence 99997 1 1 2479999999999999999999999999
Q ss_pred hccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhh
Q 003651 434 EFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLL 513 (805)
Q Consensus 434 e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~ 513 (805)
|++|..+.++|..++..+++.+.+ . ..+..++..|..|+.|++.|..|++++++.++++.||+|+|+.+|++..
T Consensus 464 e~Ed~~~~kry~si~~~f~~~l~K----~--~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~ 537 (843)
T KOG0906|consen 464 EIEDTPYSKRYLSIMSSFLEALSK----R--PDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHK 537 (843)
T ss_pred EecCChHHHHHHHHHHHHHHHhcc----C--cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccc
Confidence 999999988887776666666654 1 2233688999999999999999999999999999999999999998754
Q ss_pred -cccccCCCCcccCCCCcEEEEEEecCcceecccccceEEEEEEecCCC-eeeEEEEeCCCcchHHHHHHHHHHHHHHHh
Q 003651 514 -SELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGG-TCKMIFKKGDDIRQDQLVVQMVSLMDRLLK 591 (805)
Q Consensus 514 -~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~-~~~~i~K~gDDLRqD~lvlQli~lmd~ll~ 591 (805)
..+..+ .++++|++|++.|.+|+|+.+++|+|++.|++|+|++.+|. .|++|||+||||||||+|+|++++||++++
T Consensus 538 ~~~l~~~-~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLk 616 (843)
T KOG0906|consen 538 HMNLLDV-RLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLK 616 (843)
T ss_pred ccccccc-eeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhc
Confidence 233444 48999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred hCCCCceeccceEEEecCCCceeeeccCCChhh-------------hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 003651 592 LENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQ-------------KFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 658 (805)
Q Consensus 592 ~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~~tl~~-------------~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiL 658 (805)
++|+|++++||+|+|||++.|+||+|++.++++ ..+|++++++|+++++++||++|||||||+||||
T Consensus 617 kenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYIL 696 (843)
T KOG0906|consen 617 KENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYIL 696 (843)
T ss_pred cccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeee
Confidence 999999999999999999999999999988876 5688999999999999999999999999999999
Q ss_pred ccCCCCCCceeEccCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHH
Q 003651 659 GIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNL 738 (805)
Q Consensus 659 GIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l 738 (805)
||||||+||+|++++||+||||||||||+|||||||||||+++||++|||.+++.|++|+.+|+.||.+||+++++|+||
T Consensus 697 GvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnL 776 (843)
T KOG0906|consen 697 GVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNL 776 (843)
T ss_pred cccCCCcCceEEccCCcEEEEeeeeeccCCCCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCCcCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhhcC
Q 003651 739 FHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQYWR 805 (805)
Q Consensus 739 ~~lm~~~~ip~~~~~~~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq~~r 805 (805)
|++|++++||+++.+++++|.++++||+|++|||+|.+||+++|++|++|.+|.|.|.||+||||||
T Consensus 777 f~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aqy~R 843 (843)
T KOG0906|consen 777 FSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQYWR 843 (843)
T ss_pred HHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-146 Score=1239.56 Aligned_cols=681 Identities=30% Similarity=0.517 Sum_probs=577.8
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEe
Q 003651 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (805)
Q Consensus 12 ~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~f 91 (805)
=|++.|++|||.+..+- ..+.....+++|+++||||+++||..++|+.+++.+...||+|+.|
T Consensus 339 Wd~~~~frI~l~~is~~-----------------n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leF 401 (1076)
T KOG0904|consen 339 WDLDRPFRIKLVGISKV-----------------NLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEF 401 (1076)
T ss_pred HcCCCceEEEEeecccc-----------------CCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEe
Confidence 37788888888776662 2233344889999999999999999999999999999999999999
Q ss_pred cccccCcCccCceEEEEEeecC----------------CCCceeEeEEEEEeecCCccccccceeeeeecCCCCCCCCCC
Q 003651 92 STKYRDLTAHSQLALTVWDVSC----------------GKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPT 155 (805)
Q Consensus 92 pI~~~dLP~~a~L~~ti~~~~~----------------~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~ 155 (805)
+|+++||||+|+|||.||++.. ++.+.|+||+|++|||++++||+|.+.|++||... ++.
T Consensus 402 DI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p-~~~--- 477 (1076)
T KOG0904|consen 402 DIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVP-DEL--- 477 (1076)
T ss_pred eeecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCCC-chh---
Confidence 9999999999999999999941 23457999999999999999999999999999632 211
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCC-ceeEEecCCC
Q 003651 156 STPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLE-HRVVFQDSGA 234 (805)
Q Consensus 156 ~~p~~~~~~~~~~~~rle~l~~~~~~g~~~~~~wlD~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~-~pVvy~~~~~ 234 (805)
+.++++ .|.+.. ++++.+++.+.|.||.+. +|+.|+..+.
T Consensus 478 -----------------~e~l~p--~Gt~~~--------------------Np~ke~~~~~~i~f~~~~~~~~~yp~~~k 518 (1076)
T KOG0904|consen 478 -----------------GELLNP--KGTVRT--------------------NPNKENAASLSIKFPEYCPHPVYYPKLEK 518 (1076)
T ss_pred -----------------hhhcCC--CCcccC--------------------CCCcccchheeeeccccCCCCccCCchhh
Confidence 122332 344332 445566789999999985 8888876431
Q ss_pred CCCCCCCccCCCcceeecCCCCCCCCccHHHHHHHHhhhccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 003651 235 NFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWK 314 (805)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~ 314 (805)
+.++... -++ ....|++..-..+.+++|++|+..+|+.+|+++||++||.
T Consensus 519 ----------------~~~~~~~-----------~~~---~~~~~~~~~~~e~~~kqLk~i~~~d~l~el~e~ekd~lW~ 568 (1076)
T KOG0904|consen 519 ----------------ILEPAAD-----------RER---VNRLDRESCGREKLRKQLKEILARDPLSELTEQEKDLLWH 568 (1076)
T ss_pred ----------------ccchhhh-----------hhh---hccchhhhcccchhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 1111110 011 1122333333346789999999999999999999999999
Q ss_pred hhHhhhcc-chhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 003651 315 FRFSLMSE-KRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLL 393 (805)
Q Consensus 315 ~R~~l~~~-~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLl 393 (805)
+|+++.++ |++|||+|.||.|+++++|+|++.||..|++++|+.||||||++|+|+.||+|||+||++++||+|.+||+
T Consensus 569 ~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLL 648 (1076)
T KOG0904|consen 569 LRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLL 648 (1076)
T ss_pred HHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHH
Confidence 99999765 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHH
Q 003651 394 QLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQS 473 (805)
Q Consensus 394 QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 473 (805)
|||||||||+|+||.|++||++||++|.+|||+|||+|++|++.+....|| +.+++++++ ++. .+.+.
T Consensus 649 qLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~Rf----gllLEaYlR----Gc~----~hlk~ 716 (1076)
T KOG0904|consen 649 QLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQRF----GLLLEAYLR----GCT----HHLKV 716 (1076)
T ss_pred HHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHHHH----HHHHHHHHh----ccH----HHHHH
Confidence 999999999999999999999999999999999999999999999877776 667777774 332 67789
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCChhHHHHHHHHHHHhh--hcccccCCCCcccCCCCcEEEEEEecCcceecccccc
Q 003651 474 LVRQTELTAQLCSIMRDVGN--VRGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 549 (805)
Q Consensus 474 l~~Q~~~~~~L~~i~~~v~~--~~~~~~~k~e~l~~~L~~~--~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~ 549 (805)
|.+|++.+++|.+++..||. .+.+.++-++.|+..+++. ...+ +.+..|+||+.++.++.+++|+||+||++
T Consensus 717 l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~l----q~l~sPLdP~~~lgel~iekckvM~Skkr 792 (1076)
T KOG0904|consen 717 LTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEAL----QNLQSPLDPSLKLGELIIEKCKVMDSKKR 792 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHH----HhccCCCChhhhhcchhhhhhhhhhccCC
Confidence 99999999999999999994 2233333456677766542 2222 36889999999999999999999999999
Q ss_pred eEEEEEEecCC---CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhh
Q 003651 550 PLRLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQK 625 (805)
Q Consensus 550 P~~l~f~~~dg---~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~ 625 (805)
|+||.|.+.+- ....+|||+|||||||||++||+++||.||+.+|+|++|.||.|||||...||||+|+ +.|+++.
T Consensus 793 PLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~I 872 (1076)
T KOG0904|consen 793 PLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIANI 872 (1076)
T ss_pred ceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhhhh
Confidence 99999987652 2678999999999999999999999999999999999999999999999999999999 6899983
Q ss_pred cCCC----CCCCCC---------------C-hHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEecccc
Q 003651 626 FHPD----EHGPFG---------------I-TATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 626 ~~~~----~~~~~~---------------~-~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+... ..++|. . ...|.+.|+.||||||||||||||||||+|||||+++|++|||||||||
T Consensus 873 Q~~~g~~~at~afn~~~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~GqlFHIDFGHiL 952 (1076)
T KOG0904|consen 873 QLNTGNMAATAAFNKDALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKETGQLFHIDFGHIL 952 (1076)
T ss_pred hhccccceeeccCCHHHHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEeccCcEEEEEhhhhh
Confidence 2111 112221 0 1358899999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-----CCCccccHHHHHHhC--C-CCccc-hhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchh
Q 003651 686 GRDPKPF-----PPPMKLCKEMVEAMG--G-AESQY-YTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEK 756 (805)
Q Consensus 686 g~~p~pf-----~~PFrLT~~mv~~mG--g-~~s~~-~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~ 756 (805)
|+.+..| .+||.||.+|+.+|+ + .+++. |+.|+++|++||.+||+|+++|++||+||+++|+|++++..
T Consensus 953 Gh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~~-- 1030 (1076)
T KOG0904|consen 953 GHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSKK-- 1030 (1076)
T ss_pred ccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccHH--
Confidence 9998765 589999999999995 2 23444 99999999999999999999999999999999999999876
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHH
Q 003651 757 GILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRW 800 (805)
Q Consensus 757 ~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~-s~~t~v~~~~H~~ 800 (805)
+|+|+++.+.++.|||||.+||...++++++ +|.|+++-++|++
T Consensus 1031 Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~~H~v 1075 (1076)
T KOG0904|consen 1031 DIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWLFHNV 1075 (1076)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhhhhhc
Confidence 4889999999999999999999999999996 6999999999975
No 3
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-130 Score=1129.73 Aligned_cols=648 Identities=31% Similarity=0.499 Sum_probs=564.3
Q ss_pred CCCCceEEEEEEEeCCcccccceeccccc----CCCCccccccEEecccccCcCccCceEEEEEeecCCC----------
Q 003651 50 ERRPELYVECALYIDGAPFGLPMRTRLES----MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK---------- 115 (805)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~L~~p~~T~~~~----f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~---------- 115 (805)
+..+++|..|+|+|||+.|+.|++|.... |.....|++||+||+.+|+|||+|+|++|+|++....
T Consensus 653 s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~e 732 (1639)
T KOG0905|consen 653 SQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKE 732 (1639)
T ss_pred hhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhccc
Confidence 35689999999999999999999886544 4456789999999999999999999999999985321
Q ss_pred --CceeEeEEEEEeecCCccccccceeeeeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhh
Q 003651 116 --DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRL 193 (805)
Q Consensus 116 --~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~g~~~~~~wlD~~ 193 (805)
....+||++++|||++..+++|+.-|.+||........+..+++
T Consensus 733 rr~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~~~~l~~~~~~~---------------------------------- 778 (1639)
T KOG0905|consen 733 RRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKKQNMLKPFGAYP---------------------------------- 778 (1639)
T ss_pred ccchhhhheeeccccchhhhhcccchhhccccCCCCcCCCCCCCCC----------------------------------
Confidence 12479999999999999999999999999976644332221111
Q ss_pred hHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEEecCCCCCCCCCCccCCCcceeecCCCCCCCCccHHHHHHHHhhh
Q 003651 194 TFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSL 273 (805)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~pVvy~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs~ 273 (805)
-...+.+.|.|+||..++.|.|+++..+- +...-|| +
T Consensus 779 --------------~~qp~~~iLqidfp~~~~ei~fp~~~~d~----------~~~p~~d---------------f---- 815 (1639)
T KOG0905|consen 779 --------------YHQPDDPILQIDFPIWGFEIYFPNPQEDR----------QCIPHYD---------------F---- 815 (1639)
T ss_pred --------------ccCCCCceEEEecCCCCceEecCCccccc----------ccccccc---------------h----
Confidence 01123589999999999999999874321 1111111 1
Q ss_pred ccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccc-cCCCHHHHHHHHHHhcccC
Q 003651 274 TRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWE 352 (805)
Q Consensus 274 ~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV-~W~~~~e~~~a~~lL~~W~ 352 (805)
+ .+..+..+.|.+|+.+..+..|++|+|+++|.+|+||.++|.|||++|.|. +|+... +.+.|+||++|+
T Consensus 816 --~------tl~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~-l~~~y~lL~~Wa 886 (1639)
T KOG0905|consen 816 --A------TLDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGN-LMDVYQLLHQWA 886 (1639)
T ss_pred --h------hhhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhh-HHHHHHHHHhcc
Confidence 1 123567888999999999999999999999999999999999999999876 687765 667799999999
Q ss_pred CCChhhhhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhh
Q 003651 353 MIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVS 432 (805)
Q Consensus 353 ~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~ 432 (805)
++.|.+|||||.++|+|.+||+.||++|.+++||||..||||||||||||.|.+|+|++||++||+.|.++||+|||.|+
T Consensus 887 ~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk 966 (1639)
T KOG0905|consen 887 PLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLK 966 (1639)
T ss_pred ccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhh
Q 003651 433 VEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGL 512 (805)
Q Consensus 433 ~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~ 512 (805)
--++|.++. .+|+.++++++.. +|..+++++.+|.++++.|.+|++.|++.+++. +...|+.-|+.+
T Consensus 967 ~~l~d~qfs----~rYq~ll~aLl~~-------~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~--Rq~vL~~~l~~v 1033 (1639)
T KOG0905|consen 967 DALDDSQFS----LRYQNLLAALLDC-------CGKNLREEFKKQHKLVNELGSIAEDVRSASGSA--RQHVLRTGLGRV 1033 (1639)
T ss_pred hccccceee----hHHHHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHhHHHH
Confidence 999987754 4578888888742 244789999999999999999999999987763 455677777665
Q ss_pred hcccccCCCCcccCCCCcEEEEEEecCcceecccccceEEEEEEe--cCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHH
Q 003651 513 LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRT--ASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLL 590 (805)
Q Consensus 513 ~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~~l~f~~--~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll 590 (805)
.+.+..- ..++||+.|+..++||.+++|++|.|+..|++|+|+| .+|..+++|||.||||||||++||||++||+||
T Consensus 1034 ~~ff~~n-~tcrLPL~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIW 1112 (1639)
T KOG0905|consen 1034 DSFFLQN-NTCRLPLCPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIW 1112 (1639)
T ss_pred HHHHHhC-CceecccCchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHH
Confidence 5555433 3789999999999999999999999999999999999 559999999999999999999999999999999
Q ss_pred hhCCCCceeccceEEEecCCCceeeecc-CCChhh---------------------hcCCCCCCCCCChHHHHHHHHHHH
Q 003651 591 KLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ---------------------KFHPDEHGPFGITATCLETFIKSC 648 (805)
Q Consensus 591 ~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~---------------------~~~~~~~~~~~~~~~~~~~F~~S~ 648 (805)
.++|||++|.+|+|+|||.+.||||.|+ +.||.. +++|++. ..++|.+||++||
T Consensus 1113 l~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp~e~----eYekA~eNFiySC 1188 (1639)
T KOG0905|consen 1113 LQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNPSEF----EYEKAVENFIYSC 1188 (1639)
T ss_pred HhcCCceeEEEEEeecccccccceeecccHHHHHHHHHHhccccccccchHHHHHHhcCCCHH----HHHHHHHHHHHhc
Confidence 9999999999999999999999999999 589887 2333321 1257899999999
Q ss_pred HHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCC-----CCCCCCccccHHHHHHh--CCCCccchhhHHHHH
Q 003651 649 AGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP-----KPFPPPMKLCKEMVEAM--GGAESQYYTRFKSYC 721 (805)
Q Consensus 649 Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p-----~pf~~PFrLT~~mv~~m--Gg~~s~~~~~F~~~c 721 (805)
|||||+|||||||||||||||++++||+||||||-+||... |.-.+||.||.+|.+++ |+..+..|+.|.++|
T Consensus 1189 AG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1189 AGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred ccceeeeEeeecccccCCceEEeccCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999752 23468999999999998 456788999999999
Q ss_pred HHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 003651 722 CEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWA 801 (805)
Q Consensus 722 ~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~a 801 (805)
|+||+++|||.++++||+.+|+.+|||++++.. +++||++.|+++.||.||+.+|.++|++|+++++|++++++|++|
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~i~--dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLA 1346 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQ--DLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLA 1346 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccchh--hHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999754 589999999999999999999999999999999999999999999
Q ss_pred hh
Q 003651 802 QY 803 (805)
Q Consensus 802 q~ 803 (805)
|+
T Consensus 1347 Qm 1348 (1639)
T KOG0905|consen 1347 QM 1348 (1639)
T ss_pred HH
Confidence 96
No 4
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1.3e-88 Score=743.21 Aligned_cols=333 Identities=67% Similarity=1.120 Sum_probs=316.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccceE
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~ 551 (805)
+.|.+|.+|+++|.++++.++..++++++|.+.|++.|++.......++.+++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~P~ 81 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALMPL 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccccCce
Confidence 46999999999999999999998888889999999999886655455667999999999999999999999999999999
Q ss_pred EEEEEecCC---CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeeccCCChhh----
Q 003651 552 RLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQ---- 624 (805)
Q Consensus 552 ~l~f~~~dg---~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~~tl~~---- 624 (805)
+|+|+++|| +.|.+|||.|||||||++++|++++||++|+++++|++++||+|+|||+++||||||++.|+++
T Consensus 82 ~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~~~ 161 (350)
T cd00896 82 KLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASILKK 161 (350)
T ss_pred EEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999778776
Q ss_pred ---------hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCCCCCCC
Q 003651 625 ---------KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPP 695 (805)
Q Consensus 625 ---------~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf~~P 695 (805)
+.++++..++|+..++++||++|||||||+||||||||||+|||||+++||+|||||||+||++|+||++|
T Consensus 162 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~~~~P 241 (350)
T cd00896 162 YGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPP 241 (350)
T ss_pred HHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCCCCCC
Confidence 33555555666678899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHHcCCCCCHHHHH
Q 003651 696 MKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACV 775 (805)
Q Consensus 696 FrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~~~l~~seeeA~ 775 (805)
||||++|+++|||.+++.|+.|+..|+.||.+||+|+++|++++++|+++++||++.++++++.++++||++++||+||.
T Consensus 242 FrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~ 321 (350)
T cd00896 242 MKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAI 321 (350)
T ss_pred eeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHhhc
Q 003651 776 HFFQDLINESVSALFPQMVETIHRWAQYW 804 (805)
Q Consensus 776 ~~~~~lI~~S~~s~~t~v~~~~H~~aq~~ 804 (805)
++|+++|++|+++++|+++|++|+|||||
T Consensus 322 ~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 322 KHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=4.7e-88 Score=732.79 Aligned_cols=326 Identities=33% Similarity=0.596 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccceE
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~ 551 (805)
+++.+|++++++|.++++.||..+. .+|.+.|++.|++.. ++..++.+++||+||++.|++|.+++|+||+|+++|+
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~-~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~Pl 78 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK-QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNAVPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh-hhccCCCCCcCCCCCCeEEEEEEcCceEEecccCCCe
Confidence 5799999999999999999998763 467889999998865 5445667899999999999999999999999999999
Q ss_pred EEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeeccC-CChhhhcCC
Q 003651 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPS-RSLAQKFHP 628 (805)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~-~tl~~~~~~ 628 (805)
+|+|++.| |..|.+|||.||||||||+++|+|++||+||+++|+|++++||+|+|||+++||||+|++ .|+++....
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~ 158 (354)
T cd00895 79 KLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHH
Confidence 99999998 889999999999999999999999999999999999999999999999999999999994 788772110
Q ss_pred -CCCCCC----------------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCC-
Q 003651 629 -DEHGPF----------------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK- 690 (805)
Q Consensus 629 -~~~~~~----------------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~- 690 (805)
...+.+ ....+|++||++|||||||+||||||||||||||||+++||+||||||||||++|+
T Consensus 159 ~g~~g~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg~~~~~ 238 (354)
T cd00895 159 HGVTGSFKDRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLGHAQMF 238 (354)
T ss_pred hCcCcccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcCCCccc
Confidence 000000 01256899999999999999999999999999999999999999999999999863
Q ss_pred ----CCCCCccccHHHHHHhCC--CCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHH
Q 003651 691 ----PFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEK 764 (805)
Q Consensus 691 ----pf~~PFrLT~~mv~~mGg--~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~ 764 (805)
++++||+||+||+++||| .+|+.|+.|+++|++||++||+|+++|++||++|+++||||++..+ ++.++++|
T Consensus 239 g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~--~i~~l~~r 316 (354)
T cd00895 239 GNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLE--DLKYVYDA 316 (354)
T ss_pred CCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcch--HHHHHHHH
Confidence 578999999999999964 5688999999999999999999999999999999999999998754 68999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 765 FRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 765 ~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
|+|++||+||.+||+++|++|+++++|++++++|+|||
T Consensus 317 f~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 317 LRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 99999999999999999999999999999999999998
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=5.6e-86 Score=716.36 Aligned_cols=325 Identities=33% Similarity=0.580 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccce
Q 003651 471 WQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (805)
Q Consensus 471 ~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P 550 (805)
|++|.+|.++++.|.+++++||..++++.+ +.|++.++...+.+. +.++++|+||++.+.++.+++|+||+|+++|
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~--~~l~~~~~~l~~~~~--~~~~~lPl~p~~~~~~~~~~~c~v~~S~~~P 76 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSSTRQ--VVLQEGMERVQSFFQ--KNKCRLPLSPSLVAKELNIKVCSFFSSNAVP 76 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHhhcC--CCCCCCCCCcceeEccEehheeEEecccCCc
Confidence 357999999999999999999987655433 456666655433332 2479999999999999999999999999999
Q ss_pred EEEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhhc-
Q 003651 551 LRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQKF- 626 (805)
Q Consensus 551 ~~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~~- 626 (805)
++|+|+++| |..|.+|||.|||||||++++|+|++||++|+++|+|++++||+|+|||+++||||||+ +.|+++..
T Consensus 77 l~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~ 156 (353)
T cd05176 77 LKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQV 156 (353)
T ss_pred eEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHH
Confidence 999999999 89999999999999999999999999999999999999999999999999999999999 57888721
Q ss_pred -CCCCCCC------------CC----ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCC
Q 003651 627 -HPDEHGP------------FG----ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 689 (805)
Q Consensus 627 -~~~~~~~------------~~----~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p 689 (805)
+.. .+. ++ ...+|++||++|||||||+||||||||||+|||||+++||+|||||||+||++|
T Consensus 157 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg~~~ 235 (353)
T cd05176 157 EYGV-TGSFKDKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLGHAQ 235 (353)
T ss_pred HhCc-CCccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcCCCc
Confidence 100 000 00 124689999999999999999999999999999999999999999999999986
Q ss_pred -----CCCCCCccccHHHHHHhCCCC--ccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHH
Q 003651 690 -----KPFPPPMKLCKEMVEAMGGAE--SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQ 762 (805)
Q Consensus 690 -----~pf~~PFrLT~~mv~~mGg~~--s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~ 762 (805)
+++++|||||+||+++|||.+ ++.|+.|+++|++||++||+|+++|++||++|+++||||++..+ ++.+++
T Consensus 236 ~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~--~i~~l~ 313 (353)
T cd05176 236 MFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQ--DLKYVY 313 (353)
T ss_pred cccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCch--HHHHHH
Confidence 467899999999999998754 45799999999999999999999999999999999999999766 589999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 763 EKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 763 ~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
+||+|++||+||..||+++|++|+++++|++++++|++||
T Consensus 314 ~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 314 DALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=3.5e-85 Score=713.22 Aligned_cols=326 Identities=33% Similarity=0.568 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccceE
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~ 551 (805)
++|.+|++++++|.+++++||..+++++ .+.|++.|++....+. .+.+++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~~--~~~l~~~l~~~~~~~~-~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~Pl 78 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTRR--KEVLKREASRLEDFFQ-DVVSCCLPLNPALRVKGIDADACSYFTSNAAPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhHH--HHHHHHHHHHhhhhcc-CCCCCccCCCCCeEEEEEecCccEEehhhcCCC
Confidence 4799999999999999999999875443 3458888877433222 235899999999999999999999999999999
Q ss_pred EEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhhcCC
Q 003651 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQKFHP 628 (805)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~~~~ 628 (805)
+|+|+++| |+.|.+|||.|||||||++++|+|++||++|+++|+|++++||+|+|||+++|+||||+ +.|+++....
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~ 158 (354)
T cd05177 79 KISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHh
Confidence 99999999 78999999999999999999999999999999999999999999999999999999999 5788772110
Q ss_pred C-CCCC---------C-------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCC-
Q 003651 629 D-EHGP---------F-------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK- 690 (805)
Q Consensus 629 ~-~~~~---------~-------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~- 690 (805)
. ..+. + ....+|++||++|||||||+||||||||||||||||+++||+|||||||+||++|+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg~~~~~ 238 (354)
T cd05177 159 SGLIGPLKENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLGHAQTF 238 (354)
T ss_pred hCCCcccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcCCCccc
Confidence 0 0000 0 01245899999999999999999999999999999999999999999999999874
Q ss_pred ----CCCCCccccHHHHHH--hCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHH
Q 003651 691 ----PFPPPMKLCKEMVEA--MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEK 764 (805)
Q Consensus 691 ----pf~~PFrLT~~mv~~--mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~ 764 (805)
++++|||||++|+++ |||.+++.|+.|+++|++||++||+|+++|+++|++|++++|||++..+ ++.++++|
T Consensus 239 ~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~--~i~~l~~~ 316 (354)
T cd05177 239 GSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQ--DLKYVYNN 316 (354)
T ss_pred cCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcch--HHHHHHHH
Confidence 578999999999965 5899999999999999999999999999999999999999999999765 48999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 765 FRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 765 ~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
|+|++||+||.+||+++|++|++++.|++++++|+|||
T Consensus 317 ~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 317 LRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 99999999999999999999999999999999999998
No 8
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.7e-84 Score=705.76 Aligned_cols=327 Identities=31% Similarity=0.549 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CChhHH-HHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccc
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVR-GNTQKK-IEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 549 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~-~~~~~k-~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~ 549 (805)
+.|.+|++++++|.++++.||..+ +.++++ ++.+++.|++. ++.....++++|+||++.+.+|.+++|+||+|+++
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~--~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~~ 79 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRP--DFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAKR 79 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCc--hhhhccCCCCCCCCCceEEEEEEeccceeechhcC
Confidence 368999999999999999999876 444444 67788888653 22222248999999999999999999999999999
Q ss_pred eEEEEEEecCC------CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCCh
Q 003651 550 PLRLTFRTASG------GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (805)
Q Consensus 550 P~~l~f~~~dg------~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl 622 (805)
|+||+|+++|+ ..|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ +.|+
T Consensus 80 Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl 159 (366)
T cd05175 80 PLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTI 159 (366)
T ss_pred CeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhH
Confidence 99999999987 4689999999999999999999999999999999999999999999999999999999 5688
Q ss_pred hhhcCCC-CCC-----------------CCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 623 AQKFHPD-EHG-----------------PFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 623 ~~~~~~~-~~~-----------------~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
++..... ..+ .-....+|++||++|||||||+||||||||||||||||+++||+|||||||+
T Consensus 160 ~~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HIDFG~i 239 (366)
T cd05175 160 MQIQCKGGLKGALQFNSHTLHQWLKDKNKGEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFGHF 239 (366)
T ss_pred HHHHhccccccccccCchhHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEEehHHh
Confidence 8621110 000 0011246899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-----CCCccccHHHHHHhCC-----CCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCc
Q 003651 685 LGRDPKPF-----PPPMKLCKEMVEAMGG-----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDP 754 (805)
Q Consensus 685 lg~~p~pf-----~~PFrLT~~mv~~mGg-----~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~ 754 (805)
||++|+++ .+|||||+||+++||| .+++.|+.|+.+|++||++||+|+++|++||++|+++||||++..+
T Consensus 240 Lg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~~ 319 (366)
T cd05175 240 LDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFD 319 (366)
T ss_pred hcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcc
Confidence 99998765 4899999999999974 3678999999999999999999999999999999999999999876
Q ss_pred hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003651 755 EKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 802 (805)
Q Consensus 755 ~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~-s~~t~v~~~~H~~aq 802 (805)
++.++++||+|++||+||.++|.++|++|++ +|.|+++.++|++||
T Consensus 320 --~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~~ 366 (366)
T cd05175 320 --DIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIKQ 366 (366)
T ss_pred --HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhcC
Confidence 4789999999999999999999999999997 689999999999998
No 9
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=5.8e-84 Score=706.36 Aligned_cols=327 Identities=32% Similarity=0.569 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeccccc
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVR---GNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~---~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~ 548 (805)
+.|.+|++++++|.+++++||..+ +++++|.+.|++.|++... .++++++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~ 79 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLAN--LDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK 79 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccch--hcccccCCCCCCCceeEeeeecCceEEehhhc
Confidence 468999999999999999999876 5678889999999977432 23346899999999999999999999999999
Q ss_pred ceEEEEEEecC-----CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCCh
Q 003651 549 HPLRLTFRTAS-----GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (805)
Q Consensus 549 ~P~~l~f~~~d-----g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl 622 (805)
+|++|+|+++| |+.|.+|||.|||||||++++|+|++||+||+++++|++++||+|+|||+++|+||||+ +.|+
T Consensus 80 ~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl 159 (366)
T cd05165 80 KPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTI 159 (366)
T ss_pred CCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhH
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999 5888
Q ss_pred hhh--cCCCC-CCCC----------------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEecc
Q 003651 623 AQK--FHPDE-HGPF----------------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGY 683 (805)
Q Consensus 623 ~~~--~~~~~-~~~~----------------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ 683 (805)
++. ..... .+.+ ....+|++||++|||||||+||||||||||+|||||+++||+|||||||
T Consensus 160 ~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~HIDFG~ 239 (366)
T cd05165 160 ANIQQETGGNATAAFKKEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFHIDFGH 239 (366)
T ss_pred HHHHHhcccccccccCcHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEEEehHH
Confidence 872 11100 0011 0123589999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----CCCccccHHHHHHhCC----CCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCc
Q 003651 684 ILGRDPKPF-----PPPMKLCKEMVEAMGG----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDP 754 (805)
Q Consensus 684 ilg~~p~pf-----~~PFrLT~~mv~~mGg----~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~ 754 (805)
+||++|+++ .+|||||++|+++||+ .+++.|+.|+.+|++||.+||+|+++|+++|++|+++++||++..+
T Consensus 240 ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~~~ 319 (366)
T cd05165 240 ILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTSKE 319 (366)
T ss_pred hhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCchh
Confidence 999988654 5899999999999984 4688999999999999999999999999999999999999999754
Q ss_pred hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003651 755 EKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 802 (805)
Q Consensus 755 ~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~-s~~t~v~~~~H~~aq 802 (805)
++.++++||+|++||+||.++|+++|++|++ +|.|++++++|++|+
T Consensus 320 --~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~~~~ 366 (366)
T cd05165 320 --DIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHLVLK 366 (366)
T ss_pred --HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHHhcC
Confidence 6999999999999999999999999999997 789999999999985
No 10
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2e-83 Score=700.16 Aligned_cols=326 Identities=31% Similarity=0.550 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----ChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccc
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRG----NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~----~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~ 547 (805)
++|.+|++++++|..++..||..+. .+.++++.|++.|++... + .++.++++|+||++.+.+|.+++|+||+|+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~ 79 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQN-L-NLPESFRVPYDPGLRAGALVIEKCKVMASK 79 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhh-c-cCCCCCCCCCCCceEEEEEEcCceEEEccc
Confidence 4689999999999999999998753 345667888888876443 2 456799999999999999999999999999
Q ss_pred cceEEEEEEecCC-----CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCC
Q 003651 548 LHPLRLTFRTASG-----GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (805)
Q Consensus 548 ~~P~~l~f~~~dg-----~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~t 621 (805)
++|++|+|++.|+ ..+.+|||.|||||||++++|+|++||+||+++|+|++++||+|+|||+++||||||+ +.|
T Consensus 80 ~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~t 159 (365)
T cd00894 80 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 159 (365)
T ss_pred CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchh
Confidence 9999999999886 4789999999999999999999999999999999999999999999999999999999 578
Q ss_pred hhhhc--CCCCCCCC-------------C---ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEecc
Q 003651 622 LAQKF--HPDEHGPF-------------G---ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGY 683 (805)
Q Consensus 622 l~~~~--~~~~~~~~-------------~---~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ 683 (805)
+++.. .....+.+ . ....|++||++|||||||+||||||||||||||||+++||+|||||||
T Consensus 160 l~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHIDFG~ 239 (365)
T cd00894 160 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGH 239 (365)
T ss_pred HHHHHHhcccccccccchhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEEeeHH
Confidence 88721 11101111 0 113579999999999999999999999999999999999999999999
Q ss_pred ccCCCCC-----CCCCCccccHHHHHHhC---CCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCch
Q 003651 684 ILGRDPK-----PFPPPMKLCKEMVEAMG---GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPE 755 (805)
Q Consensus 684 ilg~~p~-----pf~~PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~ 755 (805)
+||++|+ |+++|||||++|+++|| |.+|+.|+.|+++|++||++||+|+++|++||++|+++||||++..+
T Consensus 240 ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~~~- 318 (365)
T cd00894 240 ILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKE- 318 (365)
T ss_pred hhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcch-
Confidence 9999864 46799999999999998 56788999999999999999999999999999999999999999765
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHH
Q 003651 756 KGILKLQEKFRLDLDDEACVHFFQDLINESVSA-LFPQMVETIHRWA 801 (805)
Q Consensus 756 ~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s-~~t~v~~~~H~~a 801 (805)
++.++++||++++||+||.++|.++|++|+++ |+|++++++|++|
T Consensus 319 -~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~~~ 364 (365)
T cd00894 319 -DIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHLVL 364 (365)
T ss_pred -HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHHhc
Confidence 48999999999999999999999999999975 7889999999997
No 11
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.3e-83 Score=697.55 Aligned_cols=325 Identities=33% Similarity=0.616 Sum_probs=292.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC--CCChhHHHHHHHHHHHhh--hcccccCCCCcccCCCCcEEEEEEecCcceecccc
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~--~~~~~~k~e~l~~~L~~~--~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~ 547 (805)
+.|.+|.+++++|..+++.||.. +++++++.|.+++.|++. ...+ .++++|+||++.+.++.+++|+||+|+
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~lPl~p~~~~~~~~~~~~~v~~Sk 77 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEAL----SHLQSPLSPSIILCEVCVDQCTFMDSK 77 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhh----ccCCCCCCCceEEEEEEcCcEEEEecc
Confidence 46899999999999999999987 466778899999999874 3333 268999999999999999999999999
Q ss_pred cceEEEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhh
Q 003651 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (805)
Q Consensus 548 ~~P~~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~ 624 (805)
++|++|+|++.| |..|.+|||+|||||||++++|+|++||++|+++|+|++++||+|+|||+++||||||+ +.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~ 157 (361)
T cd05174 78 MKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIAN 157 (361)
T ss_pred CCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHH
Confidence 999999999976 99999999999999999999999999999999999999999999999999999999999 588887
Q ss_pred hc--CCCC--CCCC---------------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEecccc
Q 003651 625 KF--HPDE--HGPF---------------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 625 ~~--~~~~--~~~~---------------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
.. .... .+.+ ....+|++||++|||||||+||||||||||||||||+++||+|||||||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HIDFG~il 237 (361)
T cd05174 158 IQLNKSNMAATAAFNKDALLNWLKSKNPGDALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFL 237 (361)
T ss_pred HHHhhcccchhccccchHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEehHHhh
Confidence 21 0000 0000 012457899999999999999999999999999999999999999999999
Q ss_pred CCCCC-----CCCCCccccHHHHHHhC---CCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhH
Q 003651 686 GRDPK-----PFPPPMKLCKEMVEAMG---GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKG 757 (805)
Q Consensus 686 g~~p~-----pf~~PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~ 757 (805)
|+.|+ |+++|||||++|+++|| |.+++.|+.|+.+|+.||++||+|+++|+++|++|+++||||++.. .+
T Consensus 238 g~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~--~~ 315 (361)
T cd05174 238 GNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCS--KD 315 (361)
T ss_pred cCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCch--hH
Confidence 99765 46789999999999996 2467889999999999999999999999999999999999999875 46
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHh
Q 003651 758 ILKLQEKFRLDLDDEACVHFFQDLINESV-SALFPQMVETIHRWAQ 802 (805)
Q Consensus 758 i~~l~~~~~l~~seeeA~~~~~~lI~~S~-~s~~t~v~~~~H~~aq 802 (805)
+.++++||+|++||+||.++|+++|++|+ ++|+|++++++|++|+
T Consensus 316 i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a~ 361 (361)
T cd05174 316 IQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVSK 361 (361)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhcC
Confidence 99999999999999999999999999999 5899999999999985
No 12
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=6.3e-83 Score=697.34 Aligned_cols=326 Identities=32% Similarity=0.559 Sum_probs=291.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--ChhHHHHHHHHHHHhh-hcccccCCCCcccCCCCcEEEEEEecCcceeccccc
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRG--NTQKKIEKLRQLLSGL-LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~--~~~~k~e~l~~~L~~~-~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~ 548 (805)
+.|.+|++++++|.++++.||..++ +++++++.|++.|++. ..+.. .++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~lPldP~~~v~~i~~~~~~v~~S~~ 78 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREAL---SDLQSPLNPSIILSELNVEKCKYMDSKM 78 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcc---cCCCCCCCCceEEEEEEcCceEEecccC
Confidence 4689999999999999999998654 6778899999999875 23332 4899999999999999999999999999
Q ss_pred ceEEEEEEec--CCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhh
Q 003651 549 HPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQK 625 (805)
Q Consensus 549 ~P~~l~f~~~--dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~ 625 (805)
+|++|+|.+. +|..|.+|||+|||||||++++|+|++||+||+++|+|++++||+|+|||+++|+||||+ +.|+++.
T Consensus 79 ~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I 158 (362)
T cd05173 79 KPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADI 158 (362)
T ss_pred CCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHH
Confidence 9999999886 688999999999999999999999999999999999999999999999999999999999 5788772
Q ss_pred cCCCC----CC---------CC------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccC
Q 003651 626 FHPDE----HG---------PF------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 626 ~~~~~----~~---------~~------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg 686 (805)
..... .+ ++ .....|++||++|||||||+||||||||||||||||+++||+|||||||+||
T Consensus 159 ~~~~~~~~~~~~f~~~~l~~~l~~~~~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDFG~ilg 238 (362)
T cd05173 159 QLNSSNVAAAAAFNKDALLNWLKEYNSGDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDFGHILG 238 (362)
T ss_pred HHhccccchhcccChhHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEehHHhhc
Confidence 11000 00 00 0124589999999999999999999999999999999999999999999999
Q ss_pred CCCC-----CCCCCccccHHHHHHhC-CC--CccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHH
Q 003651 687 RDPK-----PFPPPMKLCKEMVEAMG-GA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGI 758 (805)
Q Consensus 687 ~~p~-----pf~~PFrLT~~mv~~mG-g~--~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i 758 (805)
+.|+ |+++|||||++|+++|| |. +++.|+.|+.+|++||.+||+|+++|+++|++|+++|+||++... +|
T Consensus 239 ~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~~--~i 316 (362)
T cd05173 239 NFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSVK--DI 316 (362)
T ss_pred cCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccchh--HH
Confidence 8754 57899999999999996 43 467899999999999999999999999999999999999999654 69
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003651 759 LKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 802 (805)
Q Consensus 759 ~~l~~~~~l~~seeeA~~~~~~lI~~S~~-s~~t~v~~~~H~~aq 802 (805)
.++++||++++||+||.++|+++|++|++ +|+|++++++|++|+
T Consensus 317 ~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~~ 361 (362)
T cd05173 317 QYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVRK 361 (362)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999995 889999999999986
No 13
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=4.5e-82 Score=691.76 Aligned_cols=325 Identities=36% Similarity=0.614 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccceE
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~ 551 (805)
++|.+|++++++|.+|++.||..++ .++.+.|++.|++..+.. .+.++++|+||++.+.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~--~~~~~~l~~~l~~~~~~~--~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~P~ 77 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE--SARQHVLRTGLGRVDSFL--LQNKCRLPLNPALDVKGIDVRECSYFNSNALPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhhhhhc--cCCCCccCCCCceEEEeEEcCceEEeccccCce
Confidence 4799999999999999999998763 467789999998754432 235899999999999999999999999999999
Q ss_pred EEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhhcCC
Q 003651 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQKFHP 628 (805)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~~~~ 628 (805)
+|+|+++| |+.|.+|||.|||||||+++||+|++||++|+++|+|++++||+|+|||+++||||||+ +.|+++....
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05166 78 KISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVE 157 (353)
T ss_pred EEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 5788872110
Q ss_pred C-CCCCC----------------CChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCC-
Q 003651 629 D-EHGPF----------------GITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK- 690 (805)
Q Consensus 629 ~-~~~~~----------------~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~- 690 (805)
. ..+.+ .....|++||++|||||||+||||||||||+|||||+++||+|||||||+||+.|.
T Consensus 158 ~g~~~~~~~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~~~~~ 237 (353)
T cd05166 158 EGLTGSFKDRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMF 237 (353)
T ss_pred hCccccccchhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhccccccc
Confidence 0 00000 01245899999999999999999999999999999999999999999999998763
Q ss_pred ----CCCCCccccHHHHHHhCCC--CccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHH
Q 003651 691 ----PFPPPMKLCKEMVEAMGGA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEK 764 (805)
Q Consensus 691 ----pf~~PFrLT~~mv~~mGg~--~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~ 764 (805)
++++|||||++|+++|||. +++.|+.|+.+|+.||.+||+|+++|++++++|+++++|||+... ++.++++|
T Consensus 238 ~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~--~i~~l~~r 315 (353)
T cd05166 238 GGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQ--DLKYVRDA 315 (353)
T ss_pred ccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchh--HHHHHHHH
Confidence 6789999999999999754 678899999999999999999999999999999999999999654 68999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 765 FRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 765 ~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
|++++||+||.++|.++|++|+++++|++++++|++||
T Consensus 316 ~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 316 LRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=9.5e-82 Score=690.34 Aligned_cols=325 Identities=39% Similarity=0.687 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecccccceE
Q 003651 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (805)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~S~~~P~ 551 (805)
++|.+|++|+++|.+|+..+|.. ++++++.+.|++.|++... .++.++++|+||++.+.+|++++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~~---~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 77 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLEN---NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKKKPL 77 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhhc---cCCCCccCCCCCceEEEEEeccceEEeccccCCc
Confidence 47999999999999999999987 4567888999999987543 2456899999999999999999999999999999
Q ss_pred EEEEEecC--CCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhhhc--
Q 003651 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQKF-- 626 (805)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~~-- 626 (805)
+|+|+++| |+.|.+|||.|||||||++++|++++||++|+++++|++++||+|+|||+++||||||+ +.|+++..
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (352)
T cd00891 78 WLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKK 157 (352)
T ss_pred EEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 68888721
Q ss_pred CCCCCCC-------------CC---ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCC
Q 003651 627 HPDEHGP-------------FG---ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK 690 (805)
Q Consensus 627 ~~~~~~~-------------~~---~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~ 690 (805)
.....+. ++ ...+|++||++|||||||+||||||||||+|||||+++||+|||||||+||++|+
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg~~~~ 237 (352)
T cd00891 158 AGGVGGAFKDNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLGNFKK 237 (352)
T ss_pred cCccccccccchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhccCCc
Confidence 1110000 01 1245899999999999999999999999999999999999999999999999876
Q ss_pred CC-----CCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHHHHc
Q 003651 691 PF-----PPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKF 765 (805)
Q Consensus 691 pf-----~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~~ 765 (805)
++ .+|||||++|+++|||.+++.|+.|+.+|++||.+||+|++.|++++++|+++++||++.. .++.++++||
T Consensus 238 ~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~--~~i~~l~~r~ 315 (352)
T cd00891 238 KFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSI--EDIEYLRDAL 315 (352)
T ss_pred cCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcH--HHHHHHHHHh
Confidence 54 4899999999999999999999999999999999999999999999999999999999953 4689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 766 RLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 766 ~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
++++||+||..+|.++|++|+++++|+++|++|+|||
T Consensus 316 ~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 316 ALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 9999999999999999999999999999999999997
No 15
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.8e-76 Score=636.36 Aligned_cols=276 Identities=34% Similarity=0.570 Sum_probs=252.6
Q ss_pred ccCCCCcEEEEEEecCcceecccc-cceEEEEEEecCCC-------------eeeEEEEeCCCcchHHHHHHHHHHHHHH
Q 003651 524 RSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTASGG-------------TCKMIFKKGDDIRQDQLVVQMVSLMDRL 589 (805)
Q Consensus 524 ~lPldp~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~dg~-------------~~~~i~K~gDDLRqD~lvlQli~lmd~l 589 (805)
+||+||++.|.+|.+++|+||+|+ +.|++++|++.|+. .+.+|||.|||||||++++|+|++||+|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999997 78999999998764 4899999999999999999999999999
Q ss_pred HhhCCCCceeccceEEEecCCCceeeecc-CCChhhhcCC-CCC------CCCC-----ChHHHHHHHHHHHHHHHHHHH
Q 003651 590 LKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQKFHP-DEH------GPFG-----ITATCLETFIKSCAGYSVITY 656 (805)
Q Consensus 590 l~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~~~~~-~~~------~~~~-----~~~~~~~~F~~S~Agysv~tY 656 (805)
|+++++|++++||+|+|||+++||||||+ +.|+++.... +.. ..++ ....|++||++|||||||+||
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tY 160 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISY 160 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5787761100 000 0011 124689999999999999999
Q ss_pred hhccCCCCCCceeEccCCCEEEEEeccccCCCCCC----CCCCccccHHHHHHhCCCC-ccchhhHHHHHHHHHHHHHcC
Q 003651 657 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILRKS 731 (805)
Q Consensus 657 iLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~p----f~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~a~~~LRk~ 731 (805)
||||||||+|||||+++||+|||||||+||++|++ +++|||||+||+++|||.+ ++.|+.|+++|++||++||+|
T Consensus 161 iLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~ 240 (311)
T cd05167 161 LLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPY 240 (311)
T ss_pred HhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999875 5799999999999999998 788999999999999999999
Q ss_pred chHHHHHHHHHccCCCCCCcCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 732 SNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 732 ~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
+++|++++++|+++++||++ ..++.++++||++++||+||.++|.++|++|+++++|+++|.+|.|.|
T Consensus 241 ~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 308 (311)
T cd05167 241 MDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQN 308 (311)
T ss_pred HHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 99999999999999999998 347999999999999999999999999999999999999999999976
No 16
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-75 Score=680.62 Aligned_cols=472 Identities=26% Similarity=0.431 Sum_probs=400.5
Q ss_pred HHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCC-CCCCHHHHHHHHHHHhcCCchHH
Q 003651 310 QLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSP-VFESEEVRAYAVCILERADDDEL 388 (805)
Q Consensus 310 ~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~-~f~~~~VR~yAV~~L~~~~d~~L 388 (805)
.++-..-.-+...|+||+.|+. |....+-+--..-+..|+|.+|..+|.+|.+ .+.||.+-+||+++|+..+.++.
T Consensus 1292 ~~v~~~~~~~~~i~~al~~~~~---~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~ 1368 (1803)
T KOG0902|consen 1292 RLVRFDPADLVHIPEALKLFVT---QKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEM 1368 (1803)
T ss_pred HHhhcChhhhhccHHHHHHHhc---cCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCChhhh
Confidence 3444555667788999998874 4333332222345557999999999999996 45799999999999999999999
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCch--hh-hhhHHHHHHHHHHHHhhCCCCCCC
Q 003651 389 QCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV--HA-KRFYSTHEILEESMMKLTPGVDGE 465 (805)
Q Consensus 389 ~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~--~~-~~~~~~~~~l~~~~~~~l~~~~~~ 465 (805)
++|.||+||+|||+.. ...+.++|+-|-++.-+||+|.|++++++.... .. ..+..++..+.+.++..+++
T Consensus 1369 ~fyvPQiVq~lryDkm--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~~~e~i~~~~s~---- 1442 (1803)
T KOG0902|consen 1369 LFYVPQIVQALRYDKM--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDRVREEITGSLSG---- 1442 (1803)
T ss_pred hhhhHHHHHHHhhcch--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHHHHHHHHhcCCc----
Confidence 9999999999999986 678889999999999999999999999984222 21 35666677788888876654
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceecc
Q 003651 466 DGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFK 545 (805)
Q Consensus 466 ~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~~L~~~~~~l~~~~~~~~lPldp~~~i~~i~~~~~~v~~ 545 (805)
..++.+.|+.+|++++++|+..++..... ++|..++.+.|++++ + ...++||.+|+..|.+|+.+..+.++
T Consensus 1443 ---~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik--~---~~~~YlPs~P~~~v~~i~~~Sg~plQ 1513 (1803)
T KOG0902|consen 1443 ---PARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK--V---QPGCYLPSNPDAVVLDIDYKSGTPLQ 1513 (1803)
T ss_pred ---hhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc--c---cCceecCCCCCceEEEeecCCCccch
Confidence 34567999999999999999999987543 455556667776643 2 24799999999999999999999999
Q ss_pred cc-cceEEEEEEe----cCCCe----e------eEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCC
Q 003651 546 SA-LHPLRLTFRT----ASGGT----C------KMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD 610 (805)
Q Consensus 546 S~-~~P~~l~f~~----~dg~~----~------~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~ 610 (805)
|+ +.|.+.+|+. .||.. - ..|||.|||+|||+|++|+|++|..||+..|+|+.+.||+|+||+++
T Consensus 1514 S~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pG 1593 (1803)
T KOG0902|consen 1514 SAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPG 1593 (1803)
T ss_pred hhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCC
Confidence 95 8899999998 45531 1 48999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCC-ChhhhcCCCCC-------CCCC-----ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEE
Q 003651 611 EGLLEFIPSR-SLAQKFHPDEH-------GPFG-----ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLF 677 (805)
Q Consensus 611 ~GlIE~V~~~-tl~~~~~~~~~-------~~~~-----~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lf 677 (805)
||+||+|||+ +-.+-....+. ..|| ..+.|+.||++|+|||||++|+|+++||||+|||||+.||++
T Consensus 1594 cGVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~~i 1673 (1803)
T KOG0902|consen 1594 CGVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGHII 1673 (1803)
T ss_pred CceEEeCCCCccHHHhcccccccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCCEE
Confidence 9999999964 43331111111 1122 135799999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCC---CCCCccccHHHHHHhCCCC-ccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003651 678 HVDFGYILGRDPKP---FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 753 (805)
Q Consensus 678 HIDFG~ilg~~p~p---f~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 753 (805)
||||||||...|+. |.+|||||+||+..|||.. +..|..|.++|++||.+.|.|++-|+.++++|+++|+||++.+
T Consensus 1674 HIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~ 1753 (1803)
T KOG0902|consen 1674 HIDFGFMFESSPGGNLGFEPPFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQ 1753 (1803)
T ss_pred EEeeeeEEecCCCCccCcCCCccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcc
Confidence 99999999999985 7789999999999999964 7889999999999999999999999999999999999999765
Q ss_pred chhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 754 PEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 754 ~~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
+|..++.||++++||.||..++.++|.+|.++++|..||.+..+.|
T Consensus 1754 ---~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~YD~~Q~~~n 1799 (1803)
T KOG0902|consen 1754 ---TIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMYDQIQYLQN 1799 (1803)
T ss_pred ---hHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999998765
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=4.5e-69 Score=574.88 Aligned_cols=264 Identities=31% Similarity=0.552 Sum_probs=240.0
Q ss_pred EecCcceecccc-cceEEEEEEecCCC--eeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCc
Q 003651 536 IVPSESSIFKSA-LHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEG 612 (805)
Q Consensus 536 i~~~~~~v~~S~-~~P~~l~f~~~dg~--~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~G 612 (805)
+.+-++++++|+ +.|.++.|...||. .+.+|||.|||||||++++|+|++||++|+++++|++++||+|+|||+++|
T Consensus 3 ~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 3 KIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred cccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCce
Confidence 456678999998 57999999998875 899999999999999999999999999999999999999999999999999
Q ss_pred eeeecc-CCChhhh--cCCCCC-----CCCC-----ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEE
Q 003651 613 LLEFIP-SRSLAQK--FHPDEH-----GPFG-----ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 679 (805)
Q Consensus 613 lIE~V~-~~tl~~~--~~~~~~-----~~~~-----~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHI 679 (805)
+||||+ +.|+++. .+...- ..++ ...++++||++|||||||+||||||||||+|||||+++||+|||
T Consensus 83 lIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~liHI 162 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHIIHI 162 (289)
T ss_pred eEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEE
Confidence 999999 5788871 110000 0111 01358999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCC----CCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCch
Q 003651 680 DFGYILGRDPKP----FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPE 755 (805)
Q Consensus 680 DFG~ilg~~p~p----f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~ 755 (805)
||||+||.+|++ +.+|||||++|+++|||.+++.|+.|+..|++||.+||+|++.|++++++|+.+++||++ .
T Consensus 163 DFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~---~ 239 (289)
T cd00893 163 DFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR---G 239 (289)
T ss_pred ehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC---H
Confidence 999999999876 579999999999999999999999999999999999999999999999999999999998 3
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 756 KGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 756 ~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
.++.++++||++++||++|.++|.++|++|+++++|+++|.+|.|.|
T Consensus 240 ~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 286 (289)
T cd00893 240 STIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQN 286 (289)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 47899999999999999999999999999999999999999999876
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=8.5e-66 Score=550.66 Aligned_cols=255 Identities=33% Similarity=0.554 Sum_probs=227.3
Q ss_pred ccceEEEEEEecCC--CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChh
Q 003651 547 ALHPLRLTFRTASG--GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLA 623 (805)
Q Consensus 547 ~~~P~~l~f~~~dg--~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~ 623 (805)
+.+|...+..+..+ ..+.+|||.|||||||+++||+|++||.||+++++|++++||+|+|||+++||||||+ +.|++
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~ 94 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSID 94 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHH
Confidence 34555555555444 4789999999999999999999999999999999999999999999999999999999 57888
Q ss_pred h--hcCC--CCC------CCCC----ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCC
Q 003651 624 Q--KFHP--DEH------GPFG----ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 689 (805)
Q Consensus 624 ~--~~~~--~~~------~~~~----~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p 689 (805)
+ +... ... ..++ ...++++||++|||||||+||||||||||+|||||+++||+|||||||+||.+|
T Consensus 95 ~i~k~~~~~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg~~~ 174 (293)
T cd05168 95 SLKKKLTSKFKSLLDFFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLSNSP 174 (293)
T ss_pred HHHHHhccCCchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhcccc
Confidence 7 1111 000 1111 123589999999999999999999999999999999999999999999999998
Q ss_pred CC---CCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccC-CCCCCcCCchhHHHHHHHHc
Q 003651 690 KP---FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS-NIPDIASDPEKGILKLQEKF 765 (805)
Q Consensus 690 ~p---f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~-~ip~~~~~~~~~i~~l~~~~ 765 (805)
++ +.+|||||++|+++|||.+++.|+.|+..|+.||.+||+|++.|++++++|+.+ ++||++. +..++.++++||
T Consensus 175 ~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~~r~ 253 (293)
T cd05168 175 GNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLRDRF 253 (293)
T ss_pred cCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHHHHh
Confidence 75 468999999999999999999999999999999999999999999999999998 9999985 456799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003651 766 RLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 766 ~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq 802 (805)
++++||++|.++|+++|++|+++++|+++|.+|.++|
T Consensus 254 ~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 290 (293)
T cd05168 254 MLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTN 290 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999986
No 19
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=8.1e-54 Score=448.45 Aligned_cols=214 Identities=26% Similarity=0.505 Sum_probs=191.7
Q ss_pred EEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecCC
Q 003651 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (805)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~~ 610 (805)
+|. ++++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|++
T Consensus 3 ~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~~ 81 (237)
T cd00892 3 GFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNEE 81 (237)
T ss_pred ccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCCC
Confidence 444 5799999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred Cceeeecc-CCChhh---hcCCCCC-----CCCCC---hHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEE
Q 003651 611 EGLLEFIP-SRSLAQ---KFHPDEH-----GPFGI---TATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLF 677 (805)
Q Consensus 611 ~GlIE~V~-~~tl~~---~~~~~~~-----~~~~~---~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lf 677 (805)
+|+||||+ +.|+.+ +..+..- ..++. ...++++|+.|||+|||+||||||||||++||||++ +|+++
T Consensus 82 ~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~ 161 (237)
T cd00892 82 CGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVV 161 (237)
T ss_pred CceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEE
Confidence 99999999 478877 1111100 01111 124789999999999999999999999999999997 99999
Q ss_pred EEEeccccCCC---CCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 678 HVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 678 HIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
|||||++||.+ ++|+++|||||++|+++||+.+++ |.|+..|+.++.+||+|++.|++++++|+.+++-+|.
T Consensus 162 HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~--g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 162 HVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE--GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred EEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC--CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 99999999987 457889999999999999999988 9999999999999999999999999999999998875
No 20
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=6.8e-54 Score=448.28 Aligned_cols=211 Identities=27% Similarity=0.460 Sum_probs=191.2
Q ss_pred EEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecC
Q 003651 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (805)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~ 609 (805)
.+|.+ .++||+|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.+++|+|+|+|+
T Consensus 2 ~~~~~-~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 2 VGFDE-RVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCcCC-ceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 45664 799999999999999999999999999999999999999999999999999975 6899999999999999
Q ss_pred CCceeeecc-CCChhhhc------------CCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEc-cCCC
Q 003651 610 DEGLLEFIP-SRSLAQKF------------HPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGR 675 (805)
Q Consensus 610 ~~GlIE~V~-~~tl~~~~------------~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~-~~G~ 675 (805)
++|+||||+ +.|+.+.. .++...+ ..++++|++|||+||++||||||||||++||||+ ++|+
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~l~~~~~~~~~~~~~~----~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~ 156 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKNDLLRRALVEMSASPEAF----LSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGG 156 (235)
T ss_pred CCceEEEcCCchhHHHHHhhHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCc
Confidence 999999999 57887721 1111111 2478999999999999999999999999999999 6999
Q ss_pred EEEEEeccccCCCCC----CCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 676 LFHVDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 676 lfHIDFG~ilg~~p~----pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
++|||||++||.+++ |+.+|||||++|+++||+.+.+ |.|+..|+.++.+||+|++.|++++++++.+++-+|.
T Consensus 157 v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 157 LVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD--GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred EEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 999999999999875 6678999999999999999988 9999999999999999999999999999999988775
No 21
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.2e-52 Score=534.81 Aligned_cols=512 Identities=25% Similarity=0.348 Sum_probs=358.8
Q ss_pred ccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCC--HHHHHHHHHHhcccCCCCh
Q 003651 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSD--VQEAKQALELMGRWEMIDV 356 (805)
Q Consensus 279 d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~--~~e~~~a~~lL~~W~~i~~ 356 (805)
...+...+.....++.+...+.+..-+...+...|...-.......+.......+.+.+ .....+..+++..+...+.
T Consensus 1486 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 1565 (2105)
T COG5032 1486 LKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLDL 1565 (2105)
T ss_pred hHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhhhcchhHH
Confidence 34444445555666666666666556666777777776665555566666555554433 3335666788888988888
Q ss_pred hhhhhcCCC-CCCCHHHHHHHHH---------HHhcCCchHHHHHHHHHH-----H-------------Hhhcccccchh
Q 003651 357 CDALELLSP-VFESEEVRAYAVC---------ILERADDDELQCYLLQLV-----Q-------------ALRFERSDKSR 408 (805)
Q Consensus 357 ~~aLeLL~~-~f~~~~VR~yAV~---------~L~~~~d~~L~~yLlQLV-----Q-------------aLkyE~~~~s~ 408 (805)
..|.+++.. .+.++.-+.|..+ .-..+. ++....-... | +|..+.. ...
T Consensus 1566 ~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~--~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~-~~~ 1642 (2105)
T COG5032 1566 NSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVAL--SLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLF-EPI 1642 (2105)
T ss_pred HHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHH--HHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhH-HHH
Confidence 889998887 5555443333222 211110 0111111111 1 1111110 123
Q ss_pred HHHHHHHHhhcCc--chhhHHhhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 003651 409 LSQFLVQRSSHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCS 486 (805)
Q Consensus 409 L~~fLi~ra~~n~--~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~ 486 (805)
|++++-+++..+. .++.-..|.+..+..+-.........-......+.+.. +...++.+..+....+.-..
T Consensus 1643 l~q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~ 1715 (2105)
T COG5032 1643 LAQLLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKS-------PRKIRKKFKIDISLLNLSRK 1715 (2105)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhhhhHH
Confidence 7777778888877 58888888888777553321000000111122222111 01233345555555555555
Q ss_pred HH-HHhccCCCChhHHHHHHHHH----HHhhhcccccCCCCcccCCC-CcEEEEEEecCcceecccccceEEEEEEecCC
Q 003651 487 IM-RDVGNVRGNTQKKIEKLRQL----LSGLLSELTYFEEPIRSPLA-PNILITGIVPSESSIFKSALHPLRLTFRTASG 560 (805)
Q Consensus 487 i~-~~v~~~~~~~~~k~e~l~~~----L~~~~~~l~~~~~~~~lPld-p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg 560 (805)
+. ..++..++..++..+..... +..... ......|...+.+ |.+.|.++.|+...+.++.++|.+++++++||
T Consensus 1716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG 1794 (2105)
T COG5032 1716 LYISVLRSIRKRLKRLLELRLKKVSPKLLLFHA-FLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTIRGSDG 1794 (2105)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHhccc-cccccCCcccccCCCCceEEEecCceeeeecccccceEEEEEecCC
Confidence 54 43443322222222211111 101111 1112224555555 99999999987655555599999999999999
Q ss_pred CeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCC----CceeccceEEEecCCCceeeeccC-CChhh---hcCC----
Q 003651 561 GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENL----DLHLTPYNVLATGQDEGLLEFIPS-RSLAQ---KFHP---- 628 (805)
Q Consensus 561 ~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~l----dl~l~~Y~Vl~t~~~~GlIE~V~~-~tl~~---~~~~---- 628 (805)
+.|++++|+|||||||+++||++++||++|++++. |+++++|+|+|||+++|+|||||+ .|+++ ..+.
T Consensus 1795 ~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i 1874 (2105)
T COG5032 1795 KLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNI 1874 (2105)
T ss_pred cEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999976 999999999999999999999995 78776 1111
Q ss_pred ------------CCC-----------CCCCCh-----------------HHHHHHHHHHHHHHHHHHHhhccCCCCCCce
Q 003651 629 ------------DEH-----------GPFGIT-----------------ATCLETFIKSCAGYSVITYILGIGDRHLDNL 668 (805)
Q Consensus 629 ------------~~~-----------~~~~~~-----------------~~~~~~F~~S~Agysv~tYiLGIgDRH~dNI 668 (805)
+.. ...+.. ..+|+||++|||||||+|||||+||||++||
T Consensus 1875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NI 1954 (2105)
T COG5032 1875 SIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNI 1954 (2105)
T ss_pred ChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceE
Confidence 000 000111 3479999999999999999999999999999
Q ss_pred eEcc-CCCEEEEEeccccCCCCCC----CCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHc
Q 003651 669 LLRD-DGRLFHVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMA 743 (805)
Q Consensus 669 mi~~-~G~lfHIDFG~ilg~~p~p----f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~ 743 (805)
|||+ +||++|||||+++|..|+. +.+|||||++|+++||+.+.| |.|+.+|+.+|.+||+|++.|++.++.|+
T Consensus 1955 liD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~E--G~Fr~~c~~~~~~LRk~~~~L~~~le~f~ 2032 (2105)
T COG5032 1955 LIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVE--GSFRELCETAFRALRKNADSLMNVLELFV 2032 (2105)
T ss_pred EEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchh--hHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 9998 9999999999999988773 468999999999999999999 77999999999999999999999999999
Q ss_pred cC------CCCCCcCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 003651 744 GS------NIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 803 (805)
Q Consensus 744 ~~------~ip~~~~~~~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq~ 803 (805)
++ +.||....+..++.++.+||++.+++.+|..++.-+|++|+.+..|..+|-.|..++|
T Consensus 2033 ~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~y 2098 (2105)
T COG5032 2033 RDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMY 2098 (2105)
T ss_pred cCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhc
Confidence 99 8999985566678899999999999999999999999999999999999999999888
No 22
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=1.4e-52 Score=434.94 Aligned_cols=203 Identities=42% Similarity=0.713 Sum_probs=186.4
Q ss_pred ecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhC-CCCceeccceEEEecCCCceee
Q 003651 537 VPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE-NLDLHLTPYNVLATGQDEGLLE 615 (805)
Q Consensus 537 ~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~-~ldl~l~~Y~Vl~t~~~~GlIE 615 (805)
..+.++|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++++++|+|+|+|+++|+||
T Consensus 4 ~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE 83 (219)
T cd00142 4 DVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIE 83 (219)
T ss_pred cCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEE
Confidence 446899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecc-CCChhh-------hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEEeccccC
Q 003651 616 FIP-SRSLAQ-------KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILG 686 (805)
Q Consensus 616 ~V~-~~tl~~-------~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHIDFG~ilg 686 (805)
||+ +.|+.. ...++...+ ..++++|+.|||+||++||||||||||++||||++ +|+++|||||++||
T Consensus 84 ~v~~~~sl~~~l~~~~~~~~~~~~~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~ 159 (219)
T cd00142 84 VVPGSVTLEDDLSKWLKRKSPDEDEW----QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFG 159 (219)
T ss_pred EeCCCchhHHHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhC
Confidence 999 578774 223332222 35899999999999999999999999999999997 99999999999999
Q ss_pred CCCCC---CCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccC
Q 003651 687 RDPKP---FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 745 (805)
Q Consensus 687 ~~p~p---f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~ 745 (805)
.+|++ +++|||||++|+++|||.+.+ |.|+..|++++.+||+|++.|++++++|+++
T Consensus 160 ~~~~~~~~e~vPFRLT~~~~~~~g~~~~~--g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 160 KRKKFLGRERVPFRLTPDLVNALGTGGVF--GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred cCcCCCCCCCCCEeccHHHHHHhCCcchh--hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 99874 689999999999999998654 9999999999999999999999999999863
No 23
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-52 Score=467.74 Aligned_cols=240 Identities=31% Similarity=0.590 Sum_probs=219.2
Q ss_pred eeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeecc-CCChhh--hcCCCCC-------
Q 003651 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ--KFHPDEH------- 631 (805)
Q Consensus 562 ~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~--~~~~~~~------- 631 (805)
..++|+|.||||||+.++.|+|..|.+||.++|.++|++||+|+-||.+.||||.|+ +.++++ ++.+...
T Consensus 587 L~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~~ 666 (847)
T KOG0903|consen 587 LRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFFA 666 (847)
T ss_pred eEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999 578888 2222211
Q ss_pred --CCCC--ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCCC---CCCCccccHHHHH
Q 003651 632 --GPFG--ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP---FPPPMKLCKEMVE 704 (805)
Q Consensus 632 --~~~~--~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~p---f~~PFrLT~~mv~ 704 (805)
+... ....|.+||+.||||||++||+|+|+||||+|||||.+||++||||||+|++.|+. +.+|||||.|+++
T Consensus 667 ~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylE 746 (847)
T KOG0903|consen 667 AFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLE 746 (847)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHH
Confidence 1111 12458999999999999999999999999999999999999999999999999985 3589999999999
Q ss_pred HhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHcc-CCCCCCcCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003651 705 AMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG-SNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLIN 783 (805)
Q Consensus 705 ~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~-~~ip~~~~~~~~~i~~l~~~~~l~~seeeA~~~~~~lI~ 783 (805)
+|||..++.|..|+.+|.++|.++|||++-|+.|+++|.+ +++||+...+ .++.++++||+|++||||+..++..||+
T Consensus 747 vmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~-~Ti~nL~~RFhLslTEeq~~~lV~~LI~ 825 (847)
T KOG0903|consen 747 VMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGE-RTIQNLRQRFHLSLTEEQCQDLVLSLIS 825 (847)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCh-HHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 9999999764 4899999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHh
Q 003651 784 ESVSALFPQMVETIHRWAQ 802 (805)
Q Consensus 784 ~S~~s~~t~v~~~~H~~aq 802 (805)
.|++|++|++||.+..+.+
T Consensus 826 kS~~S~~TrlYD~fQyitn 844 (847)
T KOG0903|consen 826 KSLDSITTRLYDSFQYITN 844 (847)
T ss_pred hcccchhhhhhHHHHHHhc
Confidence 9999999999999988764
No 24
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=6.8e-52 Score=430.11 Aligned_cols=204 Identities=26% Similarity=0.535 Sum_probs=186.1
Q ss_pred EEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCC----CCceeccceEEEecC
Q 003651 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQ 609 (805)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldl~l~~Y~Vl~t~~ 609 (805)
.+|. +.++|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|++++ ++++++||.|+|+|+
T Consensus 2 ~~~~-~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 2 ASFD-DAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred cccc-CeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 3455 46899999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred CCceeeecc-CCChhh-------hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEE
Q 003651 610 DEGLLEFIP-SRSLAQ-------KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVD 680 (805)
Q Consensus 610 ~~GlIE~V~-~~tl~~-------~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHID 680 (805)
++|+||||+ +.|+.. ...++...+ ..+++||+.|+|+||++||||||||||++||||++ +|+++|||
T Consensus 81 ~~GliE~v~~~~sl~~~l~~~~~~~~~~~~~~----~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hID 156 (222)
T cd05164 81 RSGLIEWVEGTTTLKPVLKKWFWLQFPDPEQW----FAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHID 156 (222)
T ss_pred CCceEEEcCCcchHHHHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEc
Confidence 999999999 477776 233433222 24789999999999999999999999999999997 99999999
Q ss_pred eccccCCCCC---CCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHcc
Q 003651 681 FGYILGRDPK---PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG 744 (805)
Q Consensus 681 FG~ilg~~p~---pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~ 744 (805)
||++||.+++ |+++|||||++|+++||+.+++ |.|+..|+.++.+||+|++.|++++++|+.
T Consensus 157 f~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~ 221 (222)
T cd05164 157 FGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE--GLFRKICEQTLEVFRKHRDTLIAFLEVFVY 221 (222)
T ss_pred cHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC--ChHHHHHHHHHHHHHhCHHHHHHHHHHHhc
Confidence 9999998854 7789999999999999999887 999999999999999999999999999975
No 25
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=8.2e-52 Score=444.33 Aligned_cols=215 Identities=25% Similarity=0.464 Sum_probs=189.6
Q ss_pred EEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCC----CCceeccceEEEecC
Q 003651 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQ 609 (805)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldl~l~~Y~Vl~t~~ 609 (805)
.+|. +++.|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|++++ +++.++||.|+|+|+
T Consensus 2 ~~f~-~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 2 SSFD-PVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred cccc-CeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 4555 46899999999999999999999999999999999999999999999999999874 899999999999999
Q ss_pred CCceeeecc-CCChhhhc--------C-CCC---------CCCC---------------------------------CCh
Q 003651 610 DEGLLEFIP-SRSLAQKF--------H-PDE---------HGPF---------------------------------GIT 637 (805)
Q Consensus 610 ~~GlIE~V~-~~tl~~~~--------~-~~~---------~~~~---------------------------------~~~ 637 (805)
++||||||+ ..|+.+.. . ++. ...+ +..
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 160 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSSE 160 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHH
Confidence 999999999 57877610 0 000 0000 000
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEEeccccCCCC----CCCCCCccccHHHHHHhCCCC
Q 003651 638 --ATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRDP----KPFPPPMKLCKEMVEAMGGAE 710 (805)
Q Consensus 638 --~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHIDFG~ilg~~p----~pf~~PFrLT~~mv~~mGg~~ 710 (805)
..++++|++|||+|||+||||||||||++||||++ +|+++|||||++||.++ .|+.||||||++|+++||+.+
T Consensus 161 ~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~~g 240 (280)
T cd05169 161 AWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGVSG 240 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCCCC
Confidence 13689999999999999999999999999999996 99999999999998764 357799999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 711 SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 711 s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
++ |.|+..|+.++.+||+|++.|++++++|+.+++-+|+
T Consensus 241 ~~--G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 241 IE--GTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred CC--CchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 88 9999999999999999999999999999999998886
No 26
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=2.3e-50 Score=432.23 Aligned_cols=214 Identities=24% Similarity=0.430 Sum_probs=189.5
Q ss_pred EEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecCC
Q 003651 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (805)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~~ 610 (805)
++. +++.|+.|+++|++|+++++||+.|.+|+|.|||||||+++||++++||++|+++ ++++.+++|.|+|+|++
T Consensus 3 ~f~-~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~ 81 (279)
T cd05171 3 KFK-DVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPR 81 (279)
T ss_pred Ccc-CeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCC
Confidence 444 4688999999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred Cceeeecc-CCChhhh---c-------CCCCC------------CC----------------------------CCC---
Q 003651 611 EGLLEFIP-SRSLAQK---F-------HPDEH------------GP----------------------------FGI--- 636 (805)
Q Consensus 611 ~GlIE~V~-~~tl~~~---~-------~~~~~------------~~----------------------------~~~--- 636 (805)
+||||||+ ..|+.+. . .|... .. ++.
T Consensus 82 ~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~~ 161 (279)
T cd05171 82 AGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQD 161 (279)
T ss_pred ceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHHH
Confidence 99999999 4788761 1 11100 00 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEc-cCCCEEEEEeccccCCCC---CCCCCCccccHHHHHHhCCCCcc
Q 003651 637 TATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRDP---KPFPPPMKLCKEMVEAMGGAESQ 712 (805)
Q Consensus 637 ~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~-~~G~lfHIDFG~ilg~~p---~pf~~PFrLT~~mv~~mGg~~s~ 712 (805)
...+++||++|||+||++||||||||||++||||+ .||+++|||||++||.++ .|+.+|||||++|+++||+.+++
T Consensus 162 ~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g~~ 241 (279)
T cd05171 162 WFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITGVE 241 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCCCc
Confidence 01367999999999999999999999999999999 599999999999999874 57789999999999999999988
Q ss_pred chhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 713 YYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 713 ~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
|.|+..|+.++.+||++++.|++++++|+.+++-+|+
T Consensus 242 --g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 242 --GVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred --chHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999999999999998886
No 27
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=1.2e-49 Score=393.83 Aligned_cols=159 Identities=58% Similarity=0.953 Sum_probs=156.8
Q ss_pred ccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhh
Q 003651 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCD 358 (805)
Q Consensus 279 d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~ 358 (805)
|+++||+++++++|+.|+.+||++.|+++||++||+||+++.++|+|||+||+||+|+++.++++|+++|.+|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccc-------cchhHHHHHHHHhhcCcchhhHHhhhh
Q 003651 359 ALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERS-------DKSRLSQFLVQRSSHNIELASFLRWYV 431 (805)
Q Consensus 359 aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~-------~~s~L~~fLi~ra~~n~~i~~~l~W~L 431 (805)
||||||+.|+|+.||+|||++|++++|++|.+||||||||||||++ ++|+|++|||+||++|++|||+|||+|
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hhhccC
Q 003651 432 SVEFHD 437 (805)
Q Consensus 432 ~~e~~~ 437 (805)
++|++|
T Consensus 161 k~E~~d 166 (166)
T cd00870 161 KVELED 166 (166)
T ss_pred hhhccC
Confidence 999986
No 28
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=1.6e-49 Score=393.86 Aligned_cols=167 Identities=38% Similarity=0.662 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCC
Q 003651 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (805)
Q Consensus 287 ~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~ 366 (805)
++|++|+.|+.+||++.||++||+++|+||++|.++|+||||||+||+|+++.++++|+++|.+|++++|++||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCchhhhhhHH
Q 003651 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYS 446 (805)
Q Consensus 367 f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~ 446 (805)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..||
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~~~R~-- 159 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSVSQRF-- 159 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876665
Q ss_pred HHHHHHHHHHh
Q 003651 447 THEILEESMMK 457 (805)
Q Consensus 447 ~~~~l~~~~~~ 457 (805)
+.+++.++.
T Consensus 160 --~~~le~~l~ 168 (171)
T cd00872 160 --GLLLEAYLR 168 (171)
T ss_pred --HHHHHHHHh
Confidence 666666663
No 29
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=1.3e-48 Score=423.58 Aligned_cols=215 Identities=22% Similarity=0.461 Sum_probs=188.0
Q ss_pred EEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecC
Q 003651 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (805)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~ 609 (805)
.+|. +++.|++|+++|++|+|.|+||+.|.+|+|.|||||||+++||++++||.+|+++ +.++.++||.|+|+++
T Consensus 2 ~~f~-~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 2 ESVG-STVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred cccc-CeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 3455 4688999999999999999999999999999999999999999999999999985 5789999999999999
Q ss_pred CCceeeeccC-CChhhhc----------------C----CCC----------------------C-------CCCC--C-
Q 003651 610 DEGLLEFIPS-RSLAQKF----------------H----PDE----------------------H-------GPFG--I- 636 (805)
Q Consensus 610 ~~GlIE~V~~-~tl~~~~----------------~----~~~----------------------~-------~~~~--~- 636 (805)
++||||||++ .|+.+.. . +.. . ..+. .
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 9999999995 7775410 0 000 0 0000 0
Q ss_pred ---------------------------h--HHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEc-cCCCEEEEEeccccC
Q 003651 637 ---------------------------T--ATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILG 686 (805)
Q Consensus 637 ---------------------------~--~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~-~~G~lfHIDFG~ilg 686 (805)
. ..++++|++|||+||++||||||||||++||||+ .+|+++|||||++||
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 0 1246899999999999999999999999999999 699999999999998
Q ss_pred CCC---CCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 687 RDP---KPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 687 ~~p---~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
.++ .|+.||||||++|+++||+.+.+ |.|+..|+.++.+||++++.|+++++.++.+++-+|+
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVE--GVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCc--hhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 763 47889999999999999999987 9999999999999999999999999999999998886
No 30
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.1e-48 Score=399.06 Aligned_cols=184 Identities=49% Similarity=0.841 Sum_probs=168.1
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHHHHhhCC----CCceeccceEEEecCCCceeeecc-CCChhh-------hcCCCCC
Q 003651 564 KMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ-------KFHPDEH 631 (805)
Q Consensus 564 ~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldl~l~~Y~Vl~t~~~~GlIE~V~-~~tl~~-------~~~~~~~ 631 (805)
.+|||.|||||||++++|++++||.+|++++ +++.++||+|+|+|+++|+||||+ +.|+.+ +.+++..
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~il~~~~~~~~~~~~ 80 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQILYDWFKKKFPDPE 80 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHHHHHHHHHHCcCHH
Confidence 3799999999999999999999999999987 999999999999999999999999 578877 3344432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCCC----CCCCccccHHHHHHhC
Q 003651 632 GPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKEMVEAMG 707 (805)
Q Consensus 632 ~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~p----f~~PFrLT~~mv~~mG 707 (805)
.+ ..++++|++|||+||++||||||||||++||||+++|+++|||||++||++|+. +++|||||++|+++||
T Consensus 81 ~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg 156 (202)
T smart00146 81 DY----FEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMG 156 (202)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhC
Confidence 22 358999999999999999999999999999999999999999999999999863 6789999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003651 708 GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 753 (805)
Q Consensus 708 g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 753 (805)
+.+.+ |.|+..|++++.+||+|++.|++++++|+.+++|||...
T Consensus 157 ~~~~~--g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 157 DSGYF--GLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred CCccc--chHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 76654 999999999999999999999999999999999999864
No 31
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=1.7e-46 Score=378.57 Aligned_cols=175 Identities=43% Similarity=0.732 Sum_probs=156.4
Q ss_pred cCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhh
Q 003651 280 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDA 359 (805)
Q Consensus 280 ~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~a 359 (805)
+++||+.+++++|++|+++||+.+|+++||+++|++|+++.++|+|||+||+||+|+++.++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCch
Q 003651 360 LELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (805)
Q Consensus 360 LeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~ 439 (805)
|+||+++|+|+.||+|||++|++++|++|..||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~ 160 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE 160 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 003651 440 HAKRFYSTHEILEESMMKL 458 (805)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~ 458 (805)
+..++ ..+++.++..
T Consensus 161 ~~~r~----~~~~~~~l~~ 175 (184)
T PF00613_consen 161 YSERY----QLLLEAFLDG 175 (184)
T ss_dssp HHHHH----HHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHH
Confidence 76665 5566666653
No 32
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=3.1e-46 Score=368.26 Aligned_cols=164 Identities=35% Similarity=0.479 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccc-cCCCHHHHHHHHHHhcccCCCChhhhhhcCCC
Q 003651 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSP 365 (805)
Q Consensus 287 ~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV-~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~ 365 (805)
+++++|+.|+.+||+..||++||++||++|++|.++|+|||+||+|| +|++ .++.+++++|+.|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~~-~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDW-ANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCcH-HHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999986 6765 679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCchhhhhhH
Q 003651 366 VFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFY 445 (805)
Q Consensus 366 ~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~ 445 (805)
.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..+
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~~~~~-- 158 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCYFSSA-- 158 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCchHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886444
Q ss_pred HHHHHHHHHH
Q 003651 446 STHEILEESM 455 (805)
Q Consensus 446 ~~~~~l~~~~ 455 (805)
|+.+.+.+
T Consensus 159 --~~~l~~a~ 166 (169)
T cd00869 159 --YQDLGAAL 166 (169)
T ss_pred --HHHHHHHH
Confidence 45555554
No 33
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.6e-45 Score=447.16 Aligned_cols=424 Identities=20% Similarity=0.342 Sum_probs=305.2
Q ss_pred ccCCCChhhhhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCc--chhhHH
Q 003651 350 RWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNI--ELASFL 427 (805)
Q Consensus 350 ~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~--~i~~~l 427 (805)
.|++....+-... .-..+-+.--+++..++......-+.||+-.+.+-.. +.+.-| ++-+.+- ...++-
T Consensus 1858 ~~ek~~r~ei~s~-----~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~---dV~~vl-~~II~~l~~~YPqq~ 1928 (2382)
T KOG0890|consen 1858 SVEKAPRGEIVSK-----NLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ---DVARVL-KHIIAKLVLAYPQQT 1928 (2382)
T ss_pred ccccCChhhhhhh-----hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch---HHHHHH-HHHHHHHHHhCchHH
Confidence 3555555555444 1123455555688999999999999999999998653 333322 2222222 577888
Q ss_pred hhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 003651 428 RWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQ 507 (805)
Q Consensus 428 ~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~l~~ 507 (805)
.|.+.+-++.....++ .++..+++.-+. .. . ..-+.+..+..+.++|.+++..=.+.+.....=....++
T Consensus 1929 lW~~~a~~kS~~p~R~--~R~keIL~k~~~----~~-~---~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~k 1998 (2382)
T KOG0890|consen 1929 LWQSAALSKSNVPSRV--ERCKEILTKSRR----QK-P---DYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRK 1998 (2382)
T ss_pred HHHHHHHHhcccHHHH--HHHHHHHHHHHh----cC-c---cHHHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHH
Confidence 9999887764432211 223444443332 01 1 122345688889999999876422221110000112222
Q ss_pred HHH-----hhhccccc--------CCC--CcccCCCCcE----EEEEEecCcceecccccceEEEEEEecCCCeeeEEEE
Q 003651 508 LLS-----GLLSELTY--------FEE--PIRSPLAPNI----LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK 568 (805)
Q Consensus 508 ~L~-----~~~~~l~~--------~~~--~~~lPldp~~----~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K 568 (805)
+.. +..-.+.. ++. .=..|.+|-. .|.||. ++++|+.|.++|++|.++|+||+.|.+|+|
T Consensus 1999 l~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCK 2077 (2382)
T KOG0890|consen 1999 LVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNSLQKPKKIKLRGSDGKIYPFLCK 2077 (2382)
T ss_pred hccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcch-HHHHHHHhccCCeEEEEEcCCCCEeEEEeC
Confidence 211 11000100 000 0011222222 477887 789999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecCCCceeeeccC-CChhh-------------------
Q 003651 569 KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIPS-RSLAQ------------------- 624 (805)
Q Consensus 569 ~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~~~GlIE~V~~-~tl~~------------------- 624 (805)
..||||+|.+.|++-.++|++|+|+ .+.|.++||.|||++.+|||||||++ .++.+
T Consensus 2078 pKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~ 2157 (2382)
T KOG0890|consen 2078 PKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLR 2157 (2382)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999985 47899999999999999999999996 45554
Q ss_pred ----------------------------------hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeE
Q 003651 625 ----------------------------------KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLL 670 (805)
Q Consensus 625 ----------------------------------~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi 670 (805)
..+|++..|| .+|.+|++|.|.+|++|||||+||||.+|||+
T Consensus 2158 ~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~----~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILF 2233 (2382)
T KOG0890|consen 2158 SVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWF----ASRNNYARTTAVMSMVGYILGLGDRHGENILF 2233 (2382)
T ss_pred HhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHH----HHHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 1122222222 27899999999999999999999999999999
Q ss_pred c-cCCCEEEEEeccccCCC---CCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCC
Q 003651 671 R-DDGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSN 746 (805)
Q Consensus 671 ~-~~G~lfHIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ 746 (805)
| .||..+|+||.++|+++ ++|+.||||||+|||+|||+.|.| |.|+..|+.++..+|+|.+.+++++.-++.++
T Consensus 2234 Ds~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~E--G~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DP 2311 (2382)
T KOG0890|consen 2234 DSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLE--GSFRKVCEITLRLLRKNRETLMSILETFVYDP 2311 (2382)
T ss_pred ecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccc--hhHHHHHHHHHHHHHhcchhHHHHHHHHHhCc
Confidence 9 59999999999999987 678999999999999999999999 99999999999999999999999999999998
Q ss_pred CCCCcCCc-----------hhHHHHHHHHcCC-------CCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhhc
Q 003651 747 IPDIASDP-----------EKGILKLQEKFRL-------DLDDEACVHFFQDLINESVSALFPQMVETIHRWAQYW 804 (805)
Q Consensus 747 ip~~~~~~-----------~~~i~~l~~~~~l-------~~seeeA~~~~~~lI~~S~~s~~t~v~~~~H~~aq~~ 804 (805)
+-+|+... ...+..+++|++= .+|-| .+.+.||++|++- ..+..|.=.|+.||
T Consensus 2312 lvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSve---Gq~~~LI~eATse--enL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2312 LVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVE---GQASSLIEEATSE--ENLSEMYIGWMPFL 2382 (2382)
T ss_pred hhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchh---hHHHHHHHHhcCH--HHHHHHHhhhhccC
Confidence 87776421 1345667777763 24433 2446899999876 57888999999887
No 34
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=1.6e-45 Score=370.46 Aligned_cols=169 Identities=47% Similarity=0.753 Sum_probs=159.7
Q ss_pred ChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhh-hccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcC
Q 003651 285 SNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSL-MSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELL 363 (805)
Q Consensus 285 ~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l-~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL 363 (805)
+.+++++|+.|+++||+..|+++||+++|++|+++ .++|+||||||+||+|+++.|+++++++|..|++++|++|||||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 67889999999999999999999999999999776 58999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCchhhhh
Q 003651 364 SPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKR 443 (805)
Q Consensus 364 ~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~ 443 (805)
++.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..|
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~~~r 163 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHYSIR 163 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHh
Q 003651 444 FYSTHEILEESMMK 457 (805)
Q Consensus 444 ~~~~~~~l~~~~~~ 457 (805)
| ..+++.++.
T Consensus 164 ~----~~~le~~l~ 173 (184)
T smart00145 164 F----GLLLEAYLR 173 (184)
T ss_pred H----HHHHHHHHH
Confidence 5 556666654
No 35
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=3.4e-44 Score=401.10 Aligned_cols=264 Identities=23% Similarity=0.387 Sum_probs=209.0
Q ss_pred CCCcccCCCCcEEEEEEecCcceecccc-cceEEEEEEe-----------------------------------------
Q 003651 520 EEPIRSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRT----------------------------------------- 557 (805)
Q Consensus 520 ~~~~~lPldp~~~i~~i~~~~~~v~~S~-~~P~~l~f~~----------------------------------------- 557 (805)
+.|+..|++|++.++.|+...++|+.|+ .+|-|+.|.+
T Consensus 935 ~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1374)
T PTZ00303 935 PHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKGT 1014 (1374)
T ss_pred CcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhccccccccc
Confidence 4589999999999999999999999998 7788777653
Q ss_pred ---------------------cCCC-----------eeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEE
Q 003651 558 ---------------------ASGG-----------TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVL 605 (805)
Q Consensus 558 ---------------------~dg~-----------~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl 605 (805)
.+|. .|.+|||+| ||||||+++|||++||+||+++++|++|+||+||
T Consensus 1015 ~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRVL 1093 (1374)
T PTZ00303 1015 GAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSVL 1093 (1374)
T ss_pred CCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 1222 389999995 9999999999999999999999999999999999
Q ss_pred EecCCCceeeeccCCChhhhcCCCCCC--CCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEecc
Q 003651 606 ATGQDEGLLEFIPSRSLAQKFHPDEHG--PFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGY 683 (805)
Q Consensus 606 ~t~~~~GlIE~V~~~tl~~~~~~~~~~--~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ 683 (805)
|||.+.||||+|++.++++....+-.. .++. ...++||++|||||||+||||||||||||||||+++||+|||||||
T Consensus 1094 ATG~dsGLIEfVps~tLAsI~~~~Il~YLr~~~-t~~~~NFi~S~AGYsViTYILgIgDRHngNILId~dGhLfHIDFGF 1172 (1374)
T PTZ00303 1094 PLSCDSGLIEKAEGRELSNLDNMDIASYVLYRG-TRSCINFLASAKLFLLLNYIFSIGDRHKGNVLIGTNGALLHIDFRF 1172 (1374)
T ss_pred eccCCcccEEEecchHHHHhhhhHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhccCcccCCceeEcCCCCEEEEecce
Confidence 999999999999988776621100000 0111 2346899999999999999999999999999999999999999999
Q ss_pred ccCCCC---CCCCCCccccHHHHHHhCCCC------------------------------------------------cc
Q 003651 684 ILGRDP---KPFPPPMKLCKEMVEAMGGAE------------------------------------------------SQ 712 (805)
Q Consensus 684 ilg~~p---~pf~~PFrLT~~mv~~mGg~~------------------------------------------------s~ 712 (805)
|||+++ |+-++|+|+...|++++|+.. .+
T Consensus 1173 ILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa~p~~~~e~ss~~ 1252 (1374)
T PTZ00303 1173 IFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPASPTKAPEPSSAE 1252 (1374)
T ss_pred eecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCCCcccCCCCcchH
Confidence 999886 566789999999876543211 12
Q ss_pred chhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHhc
Q 003651 713 YYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQ-EKFRLDLDDEACVHFFQDLINESVSA 788 (805)
Q Consensus 713 ~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~-~~~~l~~seeeA~~~~~~lI~~S~~s 788 (805)
.-..|.......|..+|.++..+..|+.-.+...--+.+ +..+..+. --|.-+.+++.....|..-+++|++.
T Consensus 1253 ~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~~~---~~e~~~~~nt~f~r~as~~s~~~~f~~~~k~s~~~ 1326 (1374)
T PTZ00303 1253 IREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVPYN---DAEMLNMLNTLFDRHASQTSSASKFSTTMKESVNV 1326 (1374)
T ss_pred HHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCc
Confidence 345788888889999999999999988877655433333 12233333 34556777888888888888888764
No 36
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=3.2e-43 Score=371.68 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=187.1
Q ss_pred EEEecCcceecccccceEEEEEEecCCCeeeEEEE--eCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEe
Q 003651 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLAT 607 (805)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K--~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t 607 (805)
.++.|+--.|..|+++|++|++.|+||+.|.+++| .++|+|+|++++|++++||.+|+++ ++++.+++|.|+|+
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPL 81 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPL 81 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEc
Confidence 34555545578899999999999999999999999 4689999999999999999999864 47899999999999
Q ss_pred cCCCceeeeccC-CChhh-------------hc-CCCCC------CCCC---ChHHHHHHHHHHHHHHHHHHHhhccCCC
Q 003651 608 GQDEGLLEFIPS-RSLAQ-------------KF-HPDEH------GPFG---ITATCLETFIKSCAGYSVITYILGIGDR 663 (805)
Q Consensus 608 ~~~~GlIE~V~~-~tl~~-------------~~-~~~~~------~~~~---~~~~~~~~F~~S~Agysv~tYiLGIgDR 663 (805)
++++|+|||+++ .|+.+ +. .|++. ..+. ..-.++++|++|+|++|+++||||+|||
T Consensus 82 s~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~~~r~~ft~s~A~~s~~gYilglgdR 161 (253)
T cd05163 82 SPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINNR 161 (253)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999995 67765 11 22210 0000 0123689999999999999999999999
Q ss_pred CCCceeEcc-CCCEEEEEeccccCCC----CCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHH
Q 003651 664 HLDNLLLRD-DGRLFHVDFGYILGRD----PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNL 738 (805)
Q Consensus 664 H~dNImi~~-~G~lfHIDFG~ilg~~----p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l 738 (805)
|++||||+. ||+++|||||+.|++. +.|+++|||||++|+++||..+.+ |.|+..|+.+..+||++...+++.
T Consensus 162 h~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~e--G~f~~~~~~~~~~Lr~~~~~l~~~ 239 (253)
T cd05163 162 NPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLE--GILTSSMMAIARCLTEPEFDLENA 239 (253)
T ss_pred CchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcC--CcHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999995 9999999999999875 467889999999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCCCCc
Q 003651 739 FHLMAGSNIPDIA 751 (805)
Q Consensus 739 ~~lm~~~~ip~~~ 751 (805)
++.++.+++-+|.
T Consensus 240 L~~fi~Dpl~~W~ 252 (253)
T cd05163 240 LQLFIRDELIAWH 252 (253)
T ss_pred HHHHHcChhhhhc
Confidence 9999999988774
No 37
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=4e-43 Score=367.14 Aligned_cols=190 Identities=35% Similarity=0.644 Sum_probs=146.9
Q ss_pred eeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeeccC-CChhh---hc------CCCCC
Q 003651 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPS-RSLAQ---KF------HPDEH 631 (805)
Q Consensus 562 ~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~-~tl~~---~~------~~~~~ 631 (805)
+|++|||.|||||||++++|++++||.+|++++...++++|.|+|+++++|+||||++ .|+.+ .. ..+..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 4899999999999999999999999999999999999999999999999999999995 68776 11 00000
Q ss_pred --C--------------CC-----------CCh--HHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEc-cCCCEEEEEe
Q 003651 632 --G--------------PF-----------GIT--ATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDF 681 (805)
Q Consensus 632 --~--------------~~-----------~~~--~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~-~~G~lfHIDF 681 (805)
. .- ... ..++++|++|+|+||+++||||+||||++||||+ ++|+++||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~hIDf 160 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELIHIDF 160 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEEE--H
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceeeeEEe
Confidence 0 00 001 1378999999999999999999999999999995 7999999999
Q ss_pred ccccC--CCCCCCCCCccccHHHHHHhCC--CCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003651 682 GYILG--RDPKPFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 751 (805)
Q Consensus 682 G~ilg--~~p~pf~~PFrLT~~mv~~mGg--~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 751 (805)
|++|| ..++|+++|||||++|+++||| .....+|.|+..|+.++.+||+|.+.|++++++|+.+++++|+
T Consensus 161 g~~f~~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 161 GFIFGGKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp SSCTTHHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred HHhhhccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 99999 6778999999999999999955 4445569999999999999999999999999999999999986
No 38
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=4.9e-42 Score=335.93 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCC
Q 003651 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (805)
Q Consensus 287 ~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~ 366 (805)
.+++.+..|+.++|++.|+++||+++|++|+++.++|++||+||+||+|+++.++.+++++|..|++++|++|||||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccC
Q 003651 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHD 437 (805)
Q Consensus 367 f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~ 437 (805)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|+.|||+|||+|++|+++
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 39
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-38 Score=395.06 Aligned_cols=412 Identities=20% Similarity=0.303 Sum_probs=274.2
Q ss_pred hHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc-c-
Q 003651 325 ALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRF-E- 402 (805)
Q Consensus 325 aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLky-E- 402 (805)
||+-.+.|..-++..++.-...+..-|=. ++....|-..--+-+...+..-+.-..-||.-.|.- |
T Consensus 2241 Alt~Yl~cl~~~~~~D~~~i~R~cslWfs------------ns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~ 2308 (2806)
T KOG0892|consen 2241 ALTNYLNCLSESDEYDVDLIFRCCSLWFS------------NSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSEN 2308 (2806)
T ss_pred HHHhHHHHHhhcccccHHHHHHHhhhhcc------------ccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccC
Confidence 55555555555555555555555555511 112233333333334445555555555566555551 2
Q ss_pred cccchhHHHHHHHHhhcCc-chhhHHhhhhhhhcc--Cchhhhhh-HHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHH
Q 003651 403 RSDKSRLSQFLVQRSSHNI-ELASFLRWYVSVEFH--DPVHAKRF-YSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQT 478 (805)
Q Consensus 403 ~~~~s~L~~fLi~ra~~n~-~i~~~l~W~L~~e~~--~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~ 478 (805)
..-..+|.+.+-+++..-| --++.++=.+..+-. +... .|- ..++..+...+.- ...++ ++....+|+
T Consensus 2309 ~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~-sr~sl~~~rki~a~l~~--~~v~~-----~~~~~v~~v 2380 (2806)
T KOG0892|consen 2309 NSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENR-SRGSIDRDRKIAAELDL--CDVNQ-----GAGNMVRQL 2380 (2806)
T ss_pred chHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhh-cccccchhHHHHHHHhh--hHhhc-----cchhHHHHH
Confidence 1112444444444444444 234444433333331 1111 111 1234444433221 01111 122456666
Q ss_pred H-HHHHHHHHHHHhccCCCChhHHHHHHH---HHHHhhhcccccC-CCCcccCCCCc------EEEEEEecCcceecccc
Q 003651 479 E-LTAQLCSIMRDVGNVRGNTQKKIEKLR---QLLSGLLSELTYF-EEPIRSPLAPN------ILITGIVPSESSIFKSA 547 (805)
Q Consensus 479 ~-~~~~L~~i~~~v~~~~~~~~~k~e~l~---~~L~~~~~~l~~~-~~~~~lPldp~------~~i~~i~~~~~~v~~S~ 547 (805)
+ +++....+|+ .+.....+..|.-++. ..+... ++..+ .+.+.++.+++ ..|.++. +.+.+..--
T Consensus 2381 ~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~~--nl~~v~~pT~ev~v~~s~~~~~~p~i~s~~-~~v~~~~Gi 2456 (2806)
T KOG0892|consen 2381 ECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQL--NLEGVPPPTMNVKVNDSGDYGNIPTVVSFD-DTVTFAGGI 2456 (2806)
T ss_pred HHHHHHHHHHhc-CcccccchhhhhhcCccccHHHhhh--hccCCCCCCCCccccCCcccCCCceEEecc-cceeeecCc
Confidence 4 7777777877 5544322222311111 111111 11111 11334445554 4677777 457777767
Q ss_pred cceEEEEEEecCCCeeeEEEE-eCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccceEEEecCCCceeeecc-CCC
Q 003651 548 LHPLRLTFRTASGGTCKMIFK-KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (805)
Q Consensus 548 ~~P~~l~f~~~dg~~~~~i~K-~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y~Vl~t~~~~GlIE~V~-~~t 621 (805)
..|+.|++.++||++|.-++| ++||||||..+.|+|.+.|.+|.+. +++|.++||+|+|+|+..|++|||. +.+
T Consensus 2457 naPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tip 2536 (2806)
T KOG0892|consen 2457 NAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIP 2536 (2806)
T ss_pred cCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCee
Confidence 999999999999999999999 6699999999999999999999976 5899999999999999999999999 567
Q ss_pred hhh-----------hcCCCCCCCC------------------CC--------h-----------------HHHHHHHHHH
Q 003651 622 LAQ-----------KFHPDEHGPF------------------GI--------T-----------------ATCLETFIKS 647 (805)
Q Consensus 622 l~~-----------~~~~~~~~~~------------------~~--------~-----------------~~~~~~F~~S 647 (805)
+++ .++|++.... .+ . -+.+-+|++|
T Consensus 2537 lgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrs 2616 (2806)
T KOG0892|consen 2537 LGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRS 2616 (2806)
T ss_pred hhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 776 2233321100 00 0 1246899999
Q ss_pred HHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEEeccccCCC---CCCCCCCccccHHHHHHhCCCCccchhhHHHHHHH
Q 003651 648 CAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCE 723 (805)
Q Consensus 648 ~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~ 723 (805)
.|+-|++|||||+||||..|||||+ ||+++|||+|..|..+ |.|+.||||||+++|++||-+|++ |.||..|+.
T Consensus 2617 vA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGve--GvFrRccE~ 2694 (2806)
T KOG0892|consen 2617 VAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVE--GVFRRCCEF 2694 (2806)
T ss_pred HHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCch--HHHHHHHHH
Confidence 9999999999999999999999995 9999999999999876 669999999999999999999999 999999999
Q ss_pred HHHHHHcCchHHHHHHHHHccCCCCCCcCCchhHHHHHH
Q 003651 724 AYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQ 762 (805)
Q Consensus 724 a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~ 762 (805)
++.+||++.+.++++++.++.+++=.|...|-++..+.+
T Consensus 2695 t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~ 2733 (2806)
T KOG0892|consen 2695 TLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQK 2733 (2806)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHH
Confidence 999999999999999999999999999988866655553
No 40
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=100.00 E-value=5.1e-38 Score=309.75 Aligned_cols=138 Identities=49% Similarity=0.837 Sum_probs=129.4
Q ss_pred CCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEE
Q 003651 45 SSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 124 (805)
Q Consensus 45 ~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~ 124 (805)
.+++.++.+++||+|||||||+|||.|++|+|++|++.+.|||||+|||+|+|||++|+||||||++.+++++.+|||+|
T Consensus 22 ~~~~~~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 22 SGSNVSPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred hccccCCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEE
Confidence 67778889999999999999999999999999999999999999999999999999999999999998877789999999
Q ss_pred EEeecCCccccccceeeeeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhccc
Q 003651 125 ILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQ 183 (805)
Q Consensus 125 ~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~g~ 183 (805)
++|||++|+||+|.++|++||+.++|+..+++| ++.+++..+||+||||++|||++|+
T Consensus 102 ~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~~-~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 102 LSLFNKDGTLRRGRQKLRVWPDVEADGSIPTST-GKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred EeeECCCCcEecCCEEEEEEeCCCCCCccccCC-CCccCcchhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999988874 4455667899999999999999995
No 41
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=8.8e-35 Score=288.27 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=134.2
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcccCCCChhhhhhcCCCCCC-C
Q 003651 291 SIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFE-S 369 (805)
Q Consensus 291 ~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~f~-~ 369 (805)
.+..+.++| +..|+.+++++||++|+.+.++|+||++|| +|++..++.++++.|..|+|++|++|||||++.|+ |
T Consensus 9 av~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~ 84 (175)
T cd00871 9 AIHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGH 84 (175)
T ss_pred HHHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCC
Confidence 355666677 889999999999999999999999999997 69999999988888889999999999999999999 7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccchhHHHHHHHHhhcCcchhhHHhhhhhhhccCch
Q 003651 370 EEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (805)
Q Consensus 370 ~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~ 439 (805)
+.||+|||++|+++++|+|.+||||||||||||. ++.|++|||+||..|+.|||+|||+|++|+..++
T Consensus 85 ~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~--~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 85 PLVLQYAVRVLESYPVETVFFYIPQIVQALRYDK--MGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999997 5899999999999999999999999999997654
No 42
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.97 E-value=1.2e-30 Score=256.78 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=104.4
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEe
Q 003651 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (805)
Q Consensus 12 ~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~f 91 (805)
=|++.|++|||.++++- |..+.+++||+||||||+++||.|++|++++| +.+.|||||+|
T Consensus 4 wd~~~~~~v~i~~~~~~-------------------~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f 63 (158)
T cd08398 4 WKINSNLRIKILCATYV-------------------NVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY 63 (158)
T ss_pred eeCCCCeEEEEEeeccC-------------------CCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc
Confidence 38899999999997762 22356899999999999999999999999998 66889999999
Q ss_pred cccccCcCccCceEEEEEeecCCC----CceeEeEEEEEeecCCccccccceeeeeecCCC
Q 003651 92 STKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 148 (805)
Q Consensus 92 pI~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~ 148 (805)
||+|+||||+|+||||||++.+.+ +..+|||+|++|||++|+||+|.++|++||..+
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCc
Confidence 999999999999999999997532 347999999999999999999999999999643
No 43
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.97 E-value=1.4e-31 Score=260.02 Aligned_cols=132 Identities=42% Similarity=0.720 Sum_probs=105.7
Q ss_pred CceEEEEEEEeCCcccccce-ecccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCc----eeEeEEEEE
Q 003651 53 PELYVECALYIDGAPFGLPM-RTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE----RLVGGTTIL 126 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~-~T~~~~f~-~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~----~~vG~~~~~ 126 (805)
++++|+|+|||||++||.|+ .|++++++ ..+.|||||+|||.||||||+|+|||+||++....+. .+|||++++
T Consensus 2 ~~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 2 SKLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred CeEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 57999999999999999998 89999988 7899999999999999999999999999999876554 899999999
Q ss_pred eecCCccccccceeeeeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccc---cchhhhhhH
Q 003651 127 LFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQR---VDWLDRLTF 195 (805)
Q Consensus 127 LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~g~~~~---~~wlD~~~~ 195 (805)
|||+++.||+|.+.|+|||..++++..++ +|++|+++++++|++|++++ ++|||++||
T Consensus 82 lFd~~~~L~~G~~~L~lW~~~~~~~~~~~-----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 82 LFDYRGQLRQGPQKLSLWPDEEPDPSGPT-----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp SB-TTSBBEEEEEEEE-EET-TTSS---------------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred eECCCCcccCCCEEEEEEcCCCCcccccc-----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 99999999999999999998876654332 57899999999999999999 999999986
No 44
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.96 E-value=2.5e-29 Score=251.01 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=102.5
Q ss_pred eeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccE
Q 003651 10 LSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPI 89 (805)
Q Consensus 10 ~s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl 89 (805)
..-|++.|++|||.+++- +. .......+++|+|+||||++++|.+ +|+|++|++.+.|||||
T Consensus 4 slwdi~~~friki~~~~~--~~---------------~~~~~~~~l~V~~~Ly~g~~~l~~~-~T~~~~~~~~~~WnEwL 65 (178)
T cd08399 4 SLWDCDRKFRVKILGIDI--PV---------------LPRNTDLTVFVEANIQHGQQVLCQR-RTSPKPFTEEVLWNTWL 65 (178)
T ss_pred eeEecCCCEEEEEEeecc--cC---------------cCCCCceEEEEEEEEEECCeecccc-eeeccCCCCCccccccE
Confidence 345999999999998872 21 1123346899999999998888754 89999999999999999
Q ss_pred EecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEEeecCCccccccceeeeeecCC
Q 003651 90 TLSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (805)
Q Consensus 90 ~fpI~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~ 147 (805)
+|||+|+|||++|+|||+||++.+.. ++.||||+|++|||++++||+|.+.|++||..
T Consensus 66 ~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 66 EFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred ECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 99999999999999999999985421 36799999999999999999999999999954
No 45
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.96 E-value=2.7e-29 Score=251.34 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=108.3
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEE
Q 003651 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (805)
Q Consensus 11 s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~ 90 (805)
+-|++.+++|+|.++++-.- .+...+++|+|+|||||++||.|++|++++|.+.+.|||||+
T Consensus 3 ~w~~~~~f~i~i~~~~~~~~------------------~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~ 64 (173)
T cd08693 3 LWDIEEKFSITLHKISNLNA------------------AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLE 64 (173)
T ss_pred eeccCCCEEEEEEEeccCcc------------------CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEE
Confidence 35899999999999998321 245789999999999999999999999999988899999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEEeecCCccccccceeeeeecCCCC
Q 003651 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEA 149 (805)
Q Consensus 91 fpI~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~ 149 (805)
|||+|+||||+|+|||+||++.... +..+|||+|++|||++++||+|.+.|+|||..+.
T Consensus 65 F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~~~~ 139 (173)
T cd08693 65 FDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTYAED 139 (173)
T ss_pred cccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCCCcc
Confidence 9999999999999999999987422 2579999999999999999999999999997664
No 46
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.96 E-value=7e-29 Score=248.33 Aligned_cols=156 Identities=23% Similarity=0.409 Sum_probs=130.5
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecc----cccCCCCcccc
Q 003651 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTR----LESMGPMYCWN 86 (805)
Q Consensus 11 s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~----~~~f~~~~~Wn 86 (805)
+.|++.+++|+|.++.+..+.. .++.+++||+|+||||+++||.|++|+ |++|...+.||
T Consensus 3 ~~~v~~~~~i~v~~~h~~~~~~----------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wn 66 (171)
T cd04012 3 ASTVTDLLSVTVSSLHRIPPTW----------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWD 66 (171)
T ss_pred cccccccEEEEEEEeecCChHH----------------hhccccEEEEEEEEECCEECcCceeccccccccCcccccccc
Confidence 5689999999999999964432 234688999999999999999999996 67787788999
Q ss_pred ccEEecccccCcCccCceEEEEEeecCCC---------CceeEeEEEEEeecCCccccccceeeeeecCCCCCCCCCCCC
Q 003651 87 EPITLSTKYRDLTAHSQLALTVWDVSCGK---------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTST 157 (805)
Q Consensus 87 ewl~fpI~~~dLP~~a~L~~ti~~~~~~~---------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~ 157 (805)
|||+|||+|+||||+|+|||+||++.... ++.+|||+|++|||+++.||+|.+.|+|||..++++..+.++
T Consensus 67 ewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~~~~~~~ 146 (171)
T cd04012 67 EWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNPLGPAPP 146 (171)
T ss_pred ceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCcCCCCCc
Confidence 99999999999999999999999998654 468999999999999999999999999999877665422210
Q ss_pred CCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEEe
Q 003651 158 PGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQ 230 (805)
Q Consensus 158 p~~~~~~~~~~~~rle~l~~~~~~g~~~~~~wlD~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~pVvy~ 230 (805)
+ +....++..|.|+||.+..+|+|+
T Consensus 147 ~------------------------------------------------~~~~~~~~~l~i~fp~~~~~v~f~ 171 (171)
T cd04012 147 P------------------------------------------------LFEQPDRVILQIDFPSSAFDVIFP 171 (171)
T ss_pred C------------------------------------------------CcCCCCccEEEEeCCCccccccCC
Confidence 0 122345789999999999998874
No 47
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.96 E-value=2.2e-28 Score=241.04 Aligned_cols=125 Identities=29% Similarity=0.493 Sum_probs=108.6
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEE
Q 003651 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (805)
Q Consensus 11 s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~ 90 (805)
.-|++.+++|||.+++|... +....++++|+|||||||+++|.+..|...++...+.|||||+
T Consensus 3 l~di~~~~~i~i~~~~~~~~-----------------~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~ 65 (156)
T cd08380 3 LWDINFNLRIKIHGITNINL-----------------LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65 (156)
T ss_pred eeecCCCeEEEEEeeccccc-----------------cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeE
Confidence 35899999999999999532 3345689999999999999988776665555447799999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC--CceeEeEEEEEeecCCccccccceeeeeecCCCCCCC
Q 003651 91 LSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 152 (805)
Q Consensus 91 fpI~~~dLP~~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~ 152 (805)
|||.|+||||+|+|||+||++.... ++.+|||+|++|||+++.||+|.+.|++||..++++.
T Consensus 66 F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~ 129 (156)
T cd08380 66 FDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPR 129 (156)
T ss_pred ccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCcc
Confidence 9999999999999999999998654 5789999999999999999999999999998877754
No 48
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.90 E-value=3e-25 Score=282.61 Aligned_cols=223 Identities=26% Similarity=0.493 Sum_probs=190.6
Q ss_pred CCcEEEEEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCC----CCceeccce
Q 003651 528 APNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYN 603 (805)
Q Consensus 528 dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldl~l~~Y~ 603 (805)
-|-+.|.+|. .+..|+.|+.+|.++..+++||+.|.++.|.+.|+|||+++||++.+||.++..+. +.+.+..|.
T Consensus 1954 ~~~i~i~~f~-~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~ 2032 (2341)
T KOG0891|consen 1954 KPIIRIQSFE-PKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYS 2032 (2341)
T ss_pred ceEEehhhcc-HHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhh
Confidence 3445555555 46789999999999999999999999999999999999999999999999998774 678899999
Q ss_pred EEEecCCCceeeecc-CCChhh---------------------hcCCCCCC----------------CCCC---------
Q 003651 604 VLATGQDEGLLEFIP-SRSLAQ---------------------KFHPDEHG----------------PFGI--------- 636 (805)
Q Consensus 604 Vl~t~~~~GlIE~V~-~~tl~~---------------------~~~~~~~~----------------~~~~--------- 636 (805)
++|.+++.|+|+||+ +.|++. +..++... .-|.
T Consensus 2033 ~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlk 2112 (2341)
T KOG0891|consen 2033 VIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLK 2112 (2341)
T ss_pred hcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHh
Confidence 999999999999999 567655 11111100 0000
Q ss_pred --hH----HHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEEeccccC----CCCCCCCCCccccHHHHHH
Q 003651 637 --TA----TCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILG----RDPKPFPPPMKLCKEMVEA 705 (805)
Q Consensus 637 --~~----~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHIDFG~ilg----~~p~pf~~PFrLT~~mv~~ 705 (805)
+. ..+.+|++|.|++|+++|++|+||||+.|.|++. +|+++|||||..|+ +.++|+.+|||||+.++.+
T Consensus 2113 S~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~a 2192 (2341)
T KOG0891|consen 2113 SPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINA 2192 (2341)
T ss_pred CCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHh
Confidence 01 1367999999999999999999999999999995 99999999999988 4567888999999999999
Q ss_pred hCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003651 706 MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 753 (805)
Q Consensus 706 mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 753 (805)
|-..+-+ |.|+-.|..+..++|.+-+.+.+.++.++.+++-.|+..
T Consensus 2193 mev~gl~--g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~ 2238 (2341)
T KOG0891|consen 2193 MEVTGIE--GTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLD 2238 (2341)
T ss_pred HHHHhhh--hHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcc
Confidence 9877766 899999999999999999999999999999999888876
No 49
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=99.80 E-value=6.8e-20 Score=167.78 Aligned_cols=64 Identities=31% Similarity=0.551 Sum_probs=60.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCC
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD 116 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~ 116 (805)
++++|+|||||||++||.|++|++++|.+.+.|||||+|||+|+||||+|+|||+||++.++.+
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeCCcc
Confidence 6999999999999999999999999999999999999999999999999999999999876543
No 50
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=6.9e-10 Score=143.98 Aligned_cols=217 Identities=19% Similarity=0.225 Sum_probs=175.6
Q ss_pred CcEEEEEEecCcceecccccceEEEEEEecCCCeeeEEE--EeCCCcchHHHHHHHHHHHHHHHhhC----CCCceeccc
Q 003651 529 PNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIF--KKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPY 602 (805)
Q Consensus 529 p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~--K~gDDLRqD~lvlQli~lmd~ll~~~----~ldl~l~~Y 602 (805)
--++|.++.|....|.+..++-++|..+|+||+.|++.+ +.--+-|.+.+++|+++++|..+.+. ++.+.+.+.
T Consensus 3190 ~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p 3269 (3550)
T KOG0889|consen 3190 YFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLP 3269 (3550)
T ss_pred hhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCc
Confidence 446788999999999999999999999999999995444 44456799999999999999999876 478999999
Q ss_pred eEEEecCCCceeeecc-CCChhh-------hc--CCCCC-----------------------------------------
Q 003651 603 NVLATGQDEGLLEFIP-SRSLAQ-------KF--HPDEH----------------------------------------- 631 (805)
Q Consensus 603 ~Vl~t~~~~GlIE~V~-~~tl~~-------~~--~~~~~----------------------------------------- 631 (805)
.++|.|+...++|..| +.|+.+ .+ .+|..
T Consensus 3270 ~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~si 3349 (3550)
T KOG0889|consen 3270 IVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSI 3349 (3550)
T ss_pred eeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHH
Confidence 9999999999999999 578776 00 00000
Q ss_pred ------CCCC---ChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc-CCCEEEEEeccccCCCC----CCCCCCcc
Q 003651 632 ------GPFG---ITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRDP----KPFPPPMK 697 (805)
Q Consensus 632 ------~~~~---~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~-~G~lfHIDFG~ilg~~p----~pf~~PFr 697 (805)
+.|+ ...-.+++|+.++|..++++|.+.+|-|-++-+++++ +|.++--||-+-...+. ...++|||
T Consensus 3350 l~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFR 3429 (3550)
T KOG0889|consen 3350 LKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFR 3429 (3550)
T ss_pred HHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCee
Confidence 0000 0112579999999999999999999999999999995 99999999976553332 23589999
Q ss_pred ccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCC
Q 003651 698 LCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNI 747 (805)
Q Consensus 698 LT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~i 747 (805)
||+++.+..|..+.+ |.+...++.+-.++-++-..+-..+.+++++.+
T Consensus 3430 lTpni~~~i~~~~ve--g~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~ 3477 (3550)
T KOG0889|consen 3430 LTPNIQEFIGDFGVE--GLLAGSMMAIARCLIEPDFELDPYLQLFFRDEI 3477 (3550)
T ss_pred ecCCchhhhcchhhh--hhhHHHHHHHHHHHhCCccchhHHHHHHHHHHH
Confidence 999999999988888 889999999999999987766666666665444
No 51
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.06 E-value=0.0044 Score=59.95 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..++.||.+.+..+++.++. ..|.-+.-+.++.|||-+.|+|.-.+|+. +.|.|+||+.....+...||.+.++.+.
T Consensus 33 ~~~d~yVkv~l~~~~~~~~~-~kT~v~~~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 33 AHTSVYVKVSLMIHNKVVKT-KKTEVVDGAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCCeEEEEEEEECCEEeee-eecccEeCCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 34788999999988776533 25655555667899999999998888875 8899999998876677899999999764
No 52
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=96.95 E-value=0.0055 Score=59.08 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecCC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (805)
.+|-||.+.+.+|++... ...|..+.-+.++.|||.+.|++.-.++. ++.|.|+|||.....+...||.+.+..+...
T Consensus 34 ~~DPyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 34 GSDPFVKIQLVHGLKLIK-TKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCeEEEEEEEcCCcccc-eEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 477899999987776543 23455554456789999999999877775 5689999999877667789999988776543
Q ss_pred c
Q 003651 132 M 132 (805)
Q Consensus 132 ~ 132 (805)
+
T Consensus 112 ~ 112 (135)
T cd08410 112 P 112 (135)
T ss_pred c
Confidence 3
No 53
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=96.92 E-value=0.0091 Score=67.37 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=102.5
Q ss_pred EEEEEecCcceecccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCC
Q 003651 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (805)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~ 611 (805)
.|++|.....-.-+..++-.+|+|. +| ..+++|. -+++-|+....++..++.-... -++.+.+.+|+.-|.+.
T Consensus 44 ~i~~I~~~~GD~H~~Gr~V~~l~f~--~g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Y 116 (370)
T PF13575_consen 44 KITSIEFGLGDTHNGGRSVAILEFS--SG--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGY 116 (370)
T ss_pred CceEecCCCCCcCCCCceEEEEEEC--CC--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcc
Confidence 4566665444445556788888885 33 4689998 6899999988888877774221 23667888999998889
Q ss_pred ceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCC
Q 003651 612 GLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 687 (805)
Q Consensus 612 GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~ 687 (805)
|..|+|++.+..+ .+..++|-+-++++..+.|+||..|=|.+||.-+. +.-+=||.--+|..
T Consensus 117 gW~EfI~~~~c~~-------------~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g-~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 117 GWQEFIEHEPCNS-------------EEEVERYYYRLGVLLALLYLLNGTDLHFENIIASG-EYPVLIDLETLFHP 178 (370)
T ss_pred eeEEEecCCCCCC-------------HHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeC-CCcEEEehhhhCCc
Confidence 9999999654321 34678999999999999999999999999998854 46777888766654
No 54
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.92 E-value=0.01 Score=56.28 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=70.9
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003651 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (805)
Q Consensus 5 ~~~~~~s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~ 84 (805)
++.|.++.+ .-.+.|+|..-.+-.+. . ...+|-||.+.+..+.+.. ...+|..+.-+.++.
T Consensus 3 ~l~~~l~y~-~~~L~V~Vi~A~~L~~~----------------~-~~~~DpyVkv~l~~~~~~~-~~~kT~v~~~~~nP~ 63 (122)
T cd08381 3 QVKLSISYK-NGTLFVMVMHAKNLPLL----------------D-GSDPDPYVKTYLLPDPQKT-TKRKTKVVRKTRNPT 63 (122)
T ss_pred eEEEEEEEe-CCEEEEEEEEeeCCCCC----------------C-CCCCCCEEEEEEeeCCccC-CceeCCccCCCCCCC
Confidence 345555555 55677777655552111 1 2356779999988655332 233566555556789
Q ss_pred ccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 85 WNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 85 Wnewl~fpI-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
|||.+.|++ ...++ .++.|.|+|||...-.+...+|.+.++|=+
T Consensus 64 wnE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 64 FNEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred cccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 999999997 55555 467899999998765566789999999843
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.89 E-value=0.011 Score=56.58 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCCCeEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC
Q 003651 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (805)
Q Consensus 1 m~~~~~~~~~s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~ 80 (805)
||.-.|+..|..+- ..+.|+|..-.+-.+. + . ....++-||.+.|..+..... ..+|..+.-+
T Consensus 1 ~G~i~~sl~Y~~~~-~~L~V~V~~a~nL~~~--d------------~-~~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t 63 (128)
T cd08392 1 TGEIEFALHYNFRT-SCLEITIKACRNLAYG--D------------E-KKKKCHPYVKVCLLPDKSHNS-KRKTAVKKGT 63 (128)
T ss_pred CcEEEEEEEEeCCC-CEEEEEEEecCCCCcc--C------------C-CCCCCCeEEEEEEEeCCcccc-eeecccccCC
Confidence 34444555554333 3567777665552211 0 0 013467799999986654332 2356665555
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++.|||.+.|+|.-.+|+. ..|.++||+...-.+...+|.+.++|=+
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 67899999999988777764 6799999998765566799999999843
No 56
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=96.82 E-value=0.0031 Score=61.13 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=57.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~-~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
+|-||.+.|+.+++-+..- .|+-+--+ +++.|||.+.|+|...++ +.+|.+++||....++...||++.++.-.
T Consensus 35 ~dpYVKV~L~~~~k~~~Kk-KT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 35 LSFFVKVGMFSTGGLLYKK-KTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCcEEEEEEEECCCcceee-cCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 4679999999999988654 45544333 457899999999998643 68999999998765566789999887653
No 57
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.82 E-value=0.011 Score=51.74 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
..+.||.+.+...+ ....+|....-+..+.|||-+.|++.-.+ ...|.|+||+....++...+|++.+++.+-
T Consensus 20 ~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~ 92 (101)
T smart00239 20 KSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92 (101)
T ss_pred CCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHc
Confidence 46779999887555 23345655555557999998888876555 899999999987655678999999998875
No 58
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.81 E-value=0.014 Score=55.52 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+..++.... ..+|..+.-+.++.|||.+.|++.-.+|. +..|.|+||+...-.+...+|.+.++|=+
T Consensus 36 ~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~ 111 (125)
T cd08393 36 RSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGS 111 (125)
T ss_pred CCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCc
Confidence 467799999986654322 23566665556789999999999887874 45799999998765567799999999844
No 59
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=96.81 E-value=0.0096 Score=58.00 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=59.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
+|-||.+.|..+++.+.. ..|+.+.-+-++.|||-++|+|.-.+|... .|.|+||+....++...+|++.+++-
T Consensus 38 ~DpYVKv~l~~~~~k~~k-kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~-~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 38 IDVSVKVTLKHQNAKLKK-KQTKRAKHKINPVWNEMIMFELPSELLAAS-SVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCeEEEEEEEcCCcccce-eccceeeCCCCCccccEEEEECCHHHhCcc-EEEEEEEeCCCCcCcceeceEEecCc
Confidence 688999999998877643 356665555678999999999997777654 59999999987667779999999883
No 60
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.79 E-value=0.015 Score=55.45 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+..++..... .+|+.+.-+.++.|||.+.|+|...+|. +..|.|+||+...-++...+|.+.++|=
T Consensus 36 ~~DpyVkv~l~p~~~~~~~-~kT~v~~~t~nP~wnE~f~f~i~~~~l~-~~~L~~~V~d~~~~~~~~~lG~~~i~l~ 110 (125)
T cd04029 36 RSNPYVKTYLLPDKSRQSK-RKTSIKRNTTNPVYNETLKYSISHSQLE-TRTLQLSVWHYDRFGRNTFLGEVEIPLD 110 (125)
T ss_pred CCCcEEEEEEEcCCccccc-eEeeeeeCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCcEEEEEEEeCC
Confidence 4667999998766643322 2565555456789999999999888884 4569999999876567779999999983
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.78 E-value=0.017 Score=55.18 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=60.1
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..++.||.+.|..+.+....-.+|+-+.-+.++.|||.++|||...+|. +..|.|+||+....++...+|++.++|=+
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~ 110 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLAD 110 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhh
Confidence 4578899999987765433333565554456788999999999988876 46899999998765567799999999854
No 62
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.61 E-value=0.021 Score=54.89 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|.||.+.+..+++... ..+|.-+.-+.++.|||.+.|++...++. ++.|.|+||+....++...+|.+.+++-.
T Consensus 35 ~~dpyV~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 35 TSDPYVKVWLMYKDKRVE-KKKTVIKKRTLNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCceEEEEEEeCCCccc-cccCcceeCCCCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 467799999887665442 33565555456789999999998766654 67899999998765566789999998754
No 63
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.56 E-value=0.027 Score=57.22 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=54.3
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCCCC------ceeEeEEEEEeecCCccccccceeeeeecCC
Q 003651 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD------ERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (805)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~------~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~ 147 (805)
.+.+.|+|.|++.+. .+|....-|.||+|.++...+ +.++|-+-+||+. +|+|+.|.+.|.+-...
T Consensus 64 nk~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~~~ 135 (179)
T cd08696 64 NKSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSLEK 135 (179)
T ss_pred CCCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEecC
Confidence 456889999998777 578889999999999875322 4789999999996 77899999999986543
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.53 E-value=0.024 Score=53.53 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~LFd 129 (805)
.++-||.+.|..+.+..+ ..+|+.+.-+.++.|||-+.|++.-.++.. .|.|+||+..... +...+|++.++|=+
T Consensus 31 ~~dpYVkv~l~p~~~~~~-~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 31 TCNSYVKISLSPDKEVRF-RQKTSTVPDSANPLFHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKS 106 (119)
T ss_pred CCCeeEEEEEEeCCCCcc-eEeCccccCCCCCccccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHH
Confidence 467799999987664432 225665555567899999999998888753 6889999976543 35799999999944
No 65
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.53 E-value=0.034 Score=53.35 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.+|-||++.+-.+++... ..+|..+.-+.++.|||.+.|++...+|. ++.|.|+|||...-++...||.+.+++
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~ 108 (136)
T cd08402 35 LSDPYVKIHLMQNGKRLK-KKKTTIKKRTLNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGC 108 (136)
T ss_pred CCCCeEEEEEEECCcccc-eeeccceeCCCCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECC
Confidence 467799999876665442 33455444455688999999998877764 467999999987655667999999998
No 66
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.48 E-value=0.039 Score=52.72 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=74.4
Q ss_pred EEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccc
Q 003651 6 FRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCW 85 (805)
Q Consensus 6 ~~~~~s~dl~~~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~W 85 (805)
|+..|..+- ..++|+|..-.+-.+. ..+ ...+|-||.+.+..+.+. ..+|..+.-+.++.|
T Consensus 7 ~~l~y~~~~-~~L~V~Vi~a~~L~~~--------------~~~-~~~~DpyV~v~l~~~~~~---~~kT~v~~~t~nP~w 67 (128)
T cd08388 7 FSLRYNSEK-KALLVNIIECRDLPAM--------------DEQ-SGTSDPYVKLQLLPEKEH---KVKTRVLRKTRNPVY 67 (128)
T ss_pred EEEEEECCC-CEEEEEEEEeECCCCC--------------CCC-CCCcCCEEEEEEeCCcCc---eeeccEEcCCCCCce
Confidence 444444432 3577777766663221 000 134677999998754332 235655544567899
Q ss_pred cccEEe-cccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecCCccccccceeeeeec
Q 003651 86 NEPITL-STKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (805)
Q Consensus 86 newl~f-pI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp 145 (805)
||.+.| .+...++... .|.|+||+...-++...+|.+.++|=+-. +. |...+.+|.
T Consensus 68 nE~F~f~~~~~~~~~~~-~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--~~-~~~~~~~~~ 124 (128)
T cd08388 68 DETFTFYGIPYNQLQDL-SLHFAVLSFDRYSRDDVIGEVVCPLAGAD--LL-NEGELLVSR 124 (128)
T ss_pred eeEEEEcccCHHHhCCC-EEEEEEEEcCCCCCCceeEEEEEeccccC--CC-CCceEEEEE
Confidence 999999 5777776654 59999999876556779999999995432 22 233367885
No 67
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.47 E-value=0.028 Score=54.51 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..+|-||.+.|..+++....- +|+-+.-+.++.|||.+.|+|.-.+|+ ++.|.|+||+....++...||.+.+....
T Consensus 34 g~~DpyVkv~l~~~~~~~~k~-kT~v~k~t~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 34 TTADPFVKVYLLQDGRKISKK-KTSVKRDDTNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCeEEEEEEEeCCcccccc-CCccccCCCCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 356789999999888765432 455544456788999999998777755 47899999998766667789999886653
No 68
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.46 E-value=0.011 Score=56.14 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCceEEEEEEEeCCcccccc-eecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLP-MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p-~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.+|-||.+.|.....+-... .+|..+.-+-++.|||.++|++.-.+.+..+.|.|+|||....++..+||.+.++|=+-
T Consensus 19 ~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~ 98 (120)
T cd08395 19 MFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDI 98 (120)
T ss_pred CCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHC
Confidence 46779999987322222222 24555543447899999999998777888999999999986555567999999997432
Q ss_pred CccccccceeeeeecCC
Q 003651 131 KMQLKTGKQKLRLWPGK 147 (805)
Q Consensus 131 ~~~Lr~G~~~L~lwp~~ 147 (805)
..+|. ..+|..-
T Consensus 99 ---~~~~~--~~~w~~L 110 (120)
T cd08395 99 ---AQAGS--CACWLPL 110 (120)
T ss_pred ---cCCCc--EEEEEEC
Confidence 23332 4578643
No 69
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.46 E-value=0.027 Score=54.72 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCceEEEEEEEeC-CcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYID-GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~-~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|.||.++|..+ ++.++. ..|+-+.-+.++.|||.+.|+|.-.+|+ +..|.|+||+...-.+...+|.+.+++..
T Consensus 35 ~~dpyVkv~llp~~~~~~~~-~kT~v~~~t~nPvfnEtF~f~i~~~~l~-~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 35 APDTYVKLTLLNSDGQEISK-SKTSIRRGQPDPEFKETFVFQVALFQLS-EVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCeeEEEEEEeCCCcceee-ccceeecCCCCCcEeeeEEEECCHHHhC-ccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 5788999999864 554543 3566655556799999999999877754 56799999998876677899998887764
No 70
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=96.45 E-value=0.028 Score=53.41 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|=||.+.|..+++. ...+|+-+.-+-++.|||.+.|+|...+|+. ..|.|+|||...-++..+||.+.+++=
T Consensus 31 ~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 31 GCECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred CCCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 3677999999876652 2346776666677999999999999999875 579999999987667789999999873
No 71
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.44 E-value=0.028 Score=53.30 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++.||++.+..++... ...+|..+.-+..+.|||.+.|++.-.+| ....|.|+||+.....+...+|.++++|-+
T Consensus 34 ~~dpyv~v~l~~~~~~~-~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 34 LSDPYVKVSLLQGGKKL-KKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCcEEEEEEEcCCeEe-eeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 57889999998766443 22355555445678999999999876666 467899999998765667899999999976
No 72
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.37 E-value=0.039 Score=51.91 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=55.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+..+++ ...+|..+.-+.++.|||.++|++...+|. +..|.|+||+...-.+...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 36 TSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred CCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 367799998864432 234666665566799999999998776664 46899999998765566789999999954
No 73
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.33 E-value=0.055 Score=50.96 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+..++.. .-+|..+.-+.++.|||.+.|++...+|+ +..|.|+||+...-.+...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~---~~kT~v~~~t~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 109 (124)
T cd08387 36 TADPYCKVRLLPDRSN---TKQSKIHKKTLNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAE 109 (124)
T ss_pred CCCCeEEEEEecCCCC---cEeCceEcCCCCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEeccc
Confidence 3567999988655433 33566555566789999999999888874 56799999998665566789999998854
No 74
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.32 E-value=0.04 Score=52.94 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+..+++.+. ..+|..+.-+.++.|||.+.|++.-.++ .+..|.|+|||...-.+...||.+.+++..
T Consensus 35 ~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 35 LADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 467899999987765542 2345544444568899999999887777 567799999998765567799999998876
No 75
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.30 E-value=0.044 Score=52.25 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=56.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.+|-||.+.+..++... ....|..+.-+.++.|||.+.|++.-.+++ ...|.|+|||.....+...+|.+.+++
T Consensus 33 ~~DpyV~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 33 YSDPFVKLYLKPDAGKK-SKHKTQVKKKTLNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCcEEEEEEEcCCCcc-CCceeeeEeccCCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 46779999887554332 223566665566799999999998877764 667999999977655667999999988
No 76
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.11 E-value=0.034 Score=51.54 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+-..++. ..+|..+.-+.++.|||.+.|++...++-.++.|.|+|||...-.+...+|.+.+++=+
T Consensus 22 ~~Dpyv~v~~~~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 22 SSDPYVTASFAKFGKP---LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCccEEEEEccCCCc---cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 3567888877654432 24666665566799999999998877776778999999998755556789999998843
No 77
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.10 E-value=0.065 Score=50.29 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=55.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||++.+..++... ...+|..+.-+.++.|||.+.|++ .-.++ .++.|.|+||+.....+...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 36 LRNPYVKVYLLPDRSEK-SKRRTKTVKKTLNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCEEEEEEccCCCcc-ccccccccCCCCCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 46779999886544322 223566555566799999999994 44554 468899999998765567799999999855
No 78
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.08 E-value=0.063 Score=51.37 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.++-||++.+..+|+.. ...+|..+.-+.++.|||-+.|++.-.++. +..|.|+|||....++...||.+.+++.
T Consensus 34 ~~dpyvkv~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 34 FSDPYVKVSLMCEGRRL-KKKKTSVKKNTLNPTYNEALVFDVPPENVD-NVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCceEEEEEEeCCccc-ceecCCcccCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 46779999998776543 233555444445788999999998766664 3568999999876666779999999876
No 79
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.07 E-value=0.02 Score=56.27 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=54.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEE-eecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVW-DVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~-~~~~~~~~~~vG~~~~~L 127 (805)
.+|=||.+.|..+++.... -+|..+.-+.++.|||.++|+|. +.+..|.|+|| +.....+...+|.+.++|
T Consensus 50 ~sDPYVKv~Llp~~~~~~k-~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L 121 (146)
T cd04028 50 LPAPYVKVYLLEGKKCIAK-KKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILL 121 (146)
T ss_pred CcCCeEEEEEECCCccccc-eeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEc
Confidence 3566999999987765432 35666555667899999999987 57889999999 444434566899999999
No 80
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.06 E-value=0.061 Score=50.60 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||++.+..++.. ..+|+.+.-+.++.|||.+.|++ ...++ .+..|.|+||+....++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~~~~~~~~---~~kT~v~~~t~~P~Wne~f~f~~~~~~~l-~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 36 TSDPFVKIYLLPDKKH---KLETKVKRKNLNPHWNETFLFEGFPYEKL-QQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CCCceEEEEECCCCCc---ceeeeeecCCCCCccceeEEEcccCHHHh-CCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 3567999887543322 24666655566799999999984 33333 456899999998765566789999999843
No 81
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.05 E-value=0.027 Score=57.80 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCC----CCceeEeEEEEEeecCCc-cccccceeeeeecCC
Q 003651 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----KDERLVGGTTILLFNSKM-QLKTGKQKLRLWPGK 147 (805)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~----~~~~~vG~~~~~LFd~~~-~Lr~G~~~L~lwp~~ 147 (805)
.+.+.|+|.|.+.|...+. ..+-|.|+++-++.. +.+.|||-+-++|+..+| +|+.|.+.|.||...
T Consensus 63 ~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d 134 (196)
T cd08694 63 VDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVD 134 (196)
T ss_pred cCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEec
Confidence 4568899999999998777 678999999988632 234799999999997766 999999999999643
No 82
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.00 E-value=0.063 Score=45.85 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEE
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 124 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~ 124 (805)
.++.||++.+-..+. .-..|..+.-+..+.|||-+.|++...++.. |.|.||+.....+...+|.+.
T Consensus 19 ~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 19 KPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEEE
T ss_pred cccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEEC
Confidence 567888887765444 2345666666677999999999976666665 999999988766678899763
No 83
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=95.99 E-value=0.042 Score=50.88 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~W-newl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||++.+ ++ ...+|+.+.-+.++.| ||.++|++.-.+| .++.|.|+||+....++...+|.+.++|=.
T Consensus 20 ~~Dpyv~v~~--~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 20 LTDAFVEVKF--GS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCceEEEEE--CC----eeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 4577888876 33 3445665554557899 9999999877775 367899999997655566789999998854
No 84
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.97 E-value=0.087 Score=49.64 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd 129 (805)
.++-||++.+..++... ..-.|..+.-+.++.|||.+.|++.-.+|. +..|.|+||+...- ++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~~~nP~wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 36 IPDPYVRLYLLPDKSKS-TRRKTSVKKDNLNPVFDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCceEEEEEEcCCCCC-ceEecccccCCCCCEECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 56779999987655422 233566555456799999999998877764 56899999997642 456799999999966
No 85
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=95.93 E-value=0.11 Score=49.94 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCceEEEEEEEeCCc-ccccceecccccCCCCccccccEEeccccc-CcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGA-PFGLPMRTRLESMGPMYCWNEPITLSTKYR-DLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~-~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~-dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.++-||.+.+-.+++ +-....+|..+.-+.++.|||.+.|++.-. ....++.|.|+|||....++...+|.+.++|
T Consensus 36 ~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 36 SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 466788888764432 112334566554455689999999997643 3346789999999987655567899998876
No 86
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.92 E-value=0.068 Score=51.33 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||++.+ +|+ ..+|....-+.++.|||.+.|++ ..++....|.|+|||.....+...||.+.++|=
T Consensus 47 ~~DPYVkV~~--~~~----~~kT~vi~~t~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 47 STDGYVKVFF--GGQ----EKRTEVIWNNNNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCeEEEEEE--CCc----cccCceecCCCCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 4577888865 554 33565554445789999999973 344678899999999876656778999988873
No 87
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.88 E-value=0.096 Score=48.98 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=56.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+..++.... ..+|..+.-+.++.|||.+.|++.-.+|. ...|.|.||+....++...+|.+.++|=+
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 35 RSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcEEEEEEecCCCcCc-eeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 467799999886554322 34566555556789999999998877774 56899999997655566789999998833
No 88
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=95.87 E-value=0.062 Score=50.34 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=56.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||++.+..+++.. .+|..+.-+.++.|||.++|+|.-.++. ...|.|+||+....++...+|.+.++|=+
T Consensus 35 ~~dpyV~v~l~~~~~~~---~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 35 HCDPFVKVCLLPDERRS---LQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCCcEEEEEEeeCCCCc---eEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 35679999887655432 3565555556789999999998777774 35799999998766667899999999954
No 89
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.83 E-value=0.043 Score=55.83 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=45.4
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCC---ceeEeEEEEEeecCCcc-ccccceeeeeecC
Q 003651 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFNSKMQ-LKTGKQKLRLWPG 146 (805)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~---~~~vG~~~~~LFd~~~~-Lr~G~~~L~lwp~ 146 (805)
+.+.|+|.|.+.+. -+|..++.|.||+|.+....+ ..++|.+-++|++ +|+ +..|.+.|.++..
T Consensus 70 k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 70 KNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 56889999998776 567888999999999875431 2799999999999 776 9999999999853
No 90
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.82 E-value=0.092 Score=49.84 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=55.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fp-I~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.++.||.+.+..+.+. ..+|.-+.. .++.|||.+.|+ +.-.+|. ++.|.|+||+...-++...+|.+.++|=+-
T Consensus 36 ~~d~yVk~~llp~~~~---~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 36 ASSWQVHLVLLPSKKQ---RAKTKVQRG-PNPVFNETFTFSRVEPEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred CCCcEEEEEEccCCcc---eeecccccC-CCCcccCEEEECCCCHHHhc-cCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 4677998766554432 235544444 678899999999 7777766 677999999987655677999999999654
No 91
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.80 E-value=0.075 Score=50.42 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+ ++... ..+|..+.-+.++.|||.+.|++ ..|.++.|.|+|||....++...+|.+.++|=
T Consensus 20 ~~DPYv~v~~--~~~~~--~~kT~~v~~t~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~ 89 (124)
T cd04037 20 KSDPYLKIKL--GKKKI--NDRDNYIPNTLNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLE 89 (124)
T ss_pred CCCcEEEEEE--CCeec--cceeeEEECCCCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeec
Confidence 4566887776 44432 12344433355689999999985 45778999999999876556679999999984
No 92
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.70 E-value=0.061 Score=54.52 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=57.0
Q ss_pred cccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-----CceeEeEEEEEeecC-CccccccceeeeeecCC
Q 003651 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-----DERLVGGTTILLFNS-KMQLKTGKQKLRLWPGK 147 (805)
Q Consensus 74 T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~-----~~~~vG~~~~~LFd~-~~~Lr~G~~~L~lwp~~ 147 (805)
|+.....+.+.|+|.|.+.+. .++..++.|.||+|.+.... .+.++|.+-++|+++ ...++.|.+.|.+....
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP-~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~ 134 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLP-ADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYD 134 (178)
T ss_pred EEEEEcCCCCCCceeEEEecC-CccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecC
Confidence 444444467899999998874 45557899999999998433 367999999999995 45578899999998754
No 93
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.69 E-value=0.057 Score=63.97 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=63.2
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L-~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
...+.||+|+|+ |-|- +...+|..+.-.-.+.|||.++|+|. +|.=|.|.|+|||.....+...+|++++|+
T Consensus 477 ~~~dpyV~Vei~--G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~---~PeLAllRf~V~d~D~~~~ddfigq~~lPv-- 549 (581)
T PLN02222 477 SPPDFYTRVGIA--GVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT---VPELALLRLEVHEYDMSEKDDFGGQTCLPV-- 549 (581)
T ss_pred CCCCeeEEEEEe--ccCCCcceeeeEecCCCCCcccCCeeEEEEE---cCceeEEEEEEEECCCCCCCcEEEEEEcch--
Confidence 567889999997 1121 12234554432234889999999976 466699999999975444566899999998
Q ss_pred CCccccccceeeeeec
Q 003651 130 SKMQLKTGKQKLRLWP 145 (805)
Q Consensus 130 ~~~~Lr~G~~~L~lwp 145 (805)
..||+|...+.|..
T Consensus 550 --~~Lr~GyR~V~L~~ 563 (581)
T PLN02222 550 --WELSQGIRAFPLHS 563 (581)
T ss_pred --hhhhCccceEEccC
Confidence 57999999998853
No 94
>PLN02952 phosphoinositide phospholipase C
Probab=95.68 E-value=0.06 Score=64.03 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=61.6
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L-~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
...|.||+++|+ |-|. +...+|..+.-.-++.|||.++|++.. |.-|.|.|.|||.....+...+|++++||
T Consensus 495 ~~~D~yV~V~i~--G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv-- 567 (599)
T PLN02952 495 SPPDFYTKMYIV--GVPADNAKKKTKIIEDNWYPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPV-- 567 (599)
T ss_pred CCCCceEEEEEe--ccCCCCcceeeeeccCCCCcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcch--
Confidence 456889999988 2221 122345443222347799999999875 66799999999976555567899999999
Q ss_pred CCccccccceeeeee
Q 003651 130 SKMQLKTGKQKLRLW 144 (805)
Q Consensus 130 ~~~~Lr~G~~~L~lw 144 (805)
..||+|...+.|.
T Consensus 568 --~~Lr~GyR~VpL~ 580 (599)
T PLN02952 568 --SELRPGIRSVPLH 580 (599)
T ss_pred --hHhcCCceeEeCc
Confidence 5789999888774
No 95
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.61 E-value=0.13 Score=48.39 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=58.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCC-CccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGP-MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~-~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
..+-||++.+...+..-.....|....-.. ++.|||-++|++. .|..+.|.|.||+.... +...+|++.++|
T Consensus 24 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l--- 96 (128)
T cd00275 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL--- 96 (128)
T ss_pred ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh---
Confidence 467799999875442111233454433333 7899999999987 45567899999998765 667899999998
Q ss_pred Cccccccceeeee
Q 003651 131 KMQLKTGKQKLRL 143 (805)
Q Consensus 131 ~~~Lr~G~~~L~l 143 (805)
..|..|...+.+
T Consensus 97 -~~l~~g~~~~~l 108 (128)
T cd00275 97 -DSLRQGYRHVPL 108 (128)
T ss_pred -HHhcCceEEEEe
Confidence 345667655443
No 96
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.60 E-value=0.082 Score=50.05 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc--CcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR--DLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~--dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||++.+ +++ ..+|..+.-+.++.|||.+.|.+.-. +-+.+..|.|+||+...-++...+|.+.++|=
T Consensus 19 ~~dpYv~v~l--~~~----~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~ 91 (126)
T cd08682 19 TNDAYVIIQL--GKE----KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91 (126)
T ss_pred CCCceEEEEE--CCe----eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHH
Confidence 4677888876 332 23565554456799999999987542 22567889999999865445678999999983
No 97
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.56 E-value=0.1 Score=44.96 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=54.5
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
...+.||++.+.. ....+|....-+..+.|||.+.|++.-. ....|.|.||+.........+|.+.+++-+-
T Consensus 18 ~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l 89 (102)
T cd00030 18 GKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89 (102)
T ss_pred CCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHh
Confidence 3577788888775 2233455544445688999999997665 6788999999987765678999999998774
Q ss_pred C
Q 003651 131 K 131 (805)
Q Consensus 131 ~ 131 (805)
.
T Consensus 90 ~ 90 (102)
T cd00030 90 L 90 (102)
T ss_pred h
Confidence 4
No 98
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=95.49 E-value=0.09 Score=49.19 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=50.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+..++ ....+|..+.-+.++.|||.+.|++.-. ..+.|.|+|||.... +...+|.+.+++=
T Consensus 20 ~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 20 TPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 46678888874222 1234566555456799999999987532 456799999997655 5678999999993
No 99
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.32 E-value=0.05 Score=50.81 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=52.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+-.+ ....+|..+.-+.++.|||.+.|++. +.+..|.|+||+.....+...+|.+.++|=+
T Consensus 23 ~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 23 TVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 3566888877432 23345655555667999999999876 5678999999998766567899999999754
No 100
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.15 E-value=0.095 Score=62.29 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L-~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
...|.||+|+|+- .|- +...+|.-..=.-++.|||.++|++. +|.-|.|.|.|||.....+...+|++++|+
T Consensus 494 s~~DpyV~Vei~G--vp~D~~~~kT~v~~n~~nP~Wneef~F~l~---vPELAllRf~V~d~d~~~~ddfiGQ~~lPv-- 566 (598)
T PLN02230 494 SPPDFFVRVGIAG--APVDEVMEKTKIEYDTWTPIWNKEFIFPLA---VPELALLRVEVHEHDINEKDDFGGQTCLPV-- 566 (598)
T ss_pred CCCCceEEEEEEE--CCCCCcccceeccCCCCCCccCCeeEEEEE---cCceeEEEEEEEECCCCCCCCEEEEEEcch--
Confidence 3578899999983 221 11224432111224789999999977 477899999999976655667899999998
Q ss_pred CCccccccceeeeeec
Q 003651 130 SKMQLKTGKQKLRLWP 145 (805)
Q Consensus 130 ~~~~Lr~G~~~L~lwp 145 (805)
..||+|...+.|..
T Consensus 567 --~~Lr~GyR~V~L~~ 580 (598)
T PLN02230 567 --SEIRQGIHAVPLFN 580 (598)
T ss_pred --HHhhCccceEeccC
Confidence 46999999998853
No 101
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=95.08 E-value=0.14 Score=48.28 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCceEEEEEEEeCCcccccceecccc-cCCCCccccccEEecccccCc-CccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLE-SMGPMYCWNEPITLSTKYRDL-TAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~-~f~~~~~Wnewl~fpI~~~dL-P~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..+-||.+.+.. ....+|... .-+.++.|||.+.|++.-..| ...+.|.|.||+.....+...+|++.++|=+
T Consensus 20 ~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 20 KMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 467788877643 122344433 224568999999998865544 4578899999997654456789999999855
No 102
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.03 E-value=0.15 Score=46.61 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..++-||.+++ ++ ....|+.+.-+.++.|||.+.|++.- |..+.|.|+||+... ...+|.+.++|=+
T Consensus 19 ~~~dpyv~v~~--~~----~~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 19 KEPSPYVELTV--GK----TTQKSKVKERTNNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCCcEEEEEE--CC----EEEeCccccCCCCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 35677888877 44 23456555545679999999999753 567799999999654 4579999999854
No 103
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.01 E-value=0.16 Score=47.91 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecCC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (805)
.++-||.+.+ +++.. .+|..+.-+.++.|||.+.|++.- .+..|.|+||+.....+...||.+.++|=+--
T Consensus 21 ~~DPYv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 21 KIDPYVRVLV--NGIVK---GRTVTISNTLNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSDLI 91 (120)
T ss_pred CcCCEEEEEE--CCEEe---eceeEECCCcCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHHhh
Confidence 4566888876 44322 344444445679999999998653 24699999999876556678999999964421
Q ss_pred ccccccceee
Q 003651 132 MQLKTGKQKL 141 (805)
Q Consensus 132 ~~Lr~G~~~L 141 (805)
..-..|.+.+
T Consensus 92 ~~~~~~~~~~ 101 (120)
T cd04045 92 KKNEDGKYVE 101 (120)
T ss_pred CCCCCceEEe
Confidence 1123444444
No 104
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.98 E-value=0.19 Score=49.61 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=50.7
Q ss_pred CCCceEEEEEEEeCCcccccceecccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f-~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..+|-||.+.+ |++ ..+|....- +.++.|||.++|++. + |.++.|+|+||+.....+...+|.+.++|=+
T Consensus 19 g~sDPYV~v~l--~~~----~~kTk~~~~~t~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 19 RVPEVFVKAQL--GNQ----VLRTRPSQTRNGNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCCeEEEEEE--CCE----EeeeEeccCCCCCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 35677998887 343 224443322 357899999999873 2 5668999999998765556799999999865
No 105
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=94.97 E-value=0.33 Score=45.55 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fp-I~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.++.||++.+..++... ...+|....-+.++.|||.+.|+ +.-.++ .+..|.|+||+.... +...+|.+.++|
T Consensus 35 ~~dpyv~v~~~~~~~~~-~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~-~~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 35 LSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYGITEEDI-QRKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCceEEEEEecCCCCC-CceeeeeecCCCCCCccceEEEcCCCHHHh-CCCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 56789999886554422 23466665555679999999996 333332 245899999998765 667899999988
No 106
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=94.93 E-value=0.21 Score=47.21 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCC--ceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD--ERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~--~~~vG~~~~~LFd 129 (805)
.++-||.+.+ +|. ...+|....-+.++.|||.++|++.. +..|.|+|||.....+ ...+|.+.+++=+
T Consensus 20 ~~dpyv~v~~--~~~---~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 20 LPDPFAVITV--DGG---QTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred CCCcEEEEEE--CCc---cceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHH
Confidence 4566887775 442 23356555445679999999999853 6799999999765332 4689999998865
Q ss_pred C
Q 003651 130 S 130 (805)
Q Consensus 130 ~ 130 (805)
-
T Consensus 90 l 90 (123)
T cd08382 90 V 90 (123)
T ss_pred c
Confidence 3
No 107
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=94.90 E-value=0.091 Score=48.79 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=50.5
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
+|=||.+.+ +++. .+|..+.-+.++.|||.+.|++. +...+..|.|.|||....+....||.+.++|=.
T Consensus 26 ~DPYv~v~~--~~~~----~kT~v~~~t~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 26 MDPFVIISF--GRRV----FRTSWRRHTLNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred cCceEEEEE--CCEe----EeeeeecCCCCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHHH
Confidence 456887775 4332 25666655667999999999875 333456899999998766667889999999843
No 108
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.90 E-value=0.2 Score=47.55 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCceEEEEEEEeC--CcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYID--GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~--~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+... ++... ..+|..+.-+.++.|||.+.|++. +.+..|.|+|||....++...+|.+.+++=+
T Consensus 20 ~~Dpyv~v~~~~~~~~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 20 ASDPYVKISLYDPDGNGEID-SVQTKTIKKTLNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CcCcEEEEEEECCCCCCccc-ceeeeEEcCCCCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4566999888743 22222 335555444556899999999874 3357899999998765566789999998644
No 109
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.80 E-value=0.15 Score=48.25 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~L 127 (805)
.++-||.+.+ +++ ..+|+.+.-+.++.|||.+.|++.-..-..+..|.|+||+..... +...+|.+.+++
T Consensus 20 ~~dpyv~v~~--~~~----~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l 90 (127)
T cd04022 20 SSSAYVELDF--DGQ----KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISG 90 (127)
T ss_pred CcCcEEEEEE--CCE----EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcH
Confidence 4566877654 443 235555444556899999999976443334678999999975443 567899999988
No 110
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.77 E-value=0.11 Score=51.51 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=53.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||++.+ +|+. .+|+.+.-+.++.|||-+.||+...++ +..|.|+|||.....+...+|.+.++|-+
T Consensus 34 ~~DPYV~V~~--~g~~----~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 34 LVDPYVEVSF--AGQK----VKTSVKKNSYNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CcCcEEEEEE--CCEe----eecceEcCCCCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 4577998874 4543 467666556679999999999766543 46899999998765567799999999865
No 111
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=94.75 E-value=0.22 Score=46.71 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=47.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+ +++.. .+|....-+.++.|||.+.|++. ++ +..|.|+|||.....+...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~--~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~~--~~~l~~~v~D~d~~~~~~~iG~~~~~l~ 87 (121)
T cd04042 20 TSDPYVKFKY--GGKTV---YKSKTIYKNLNPVWDEKFTLPIE--DV--TQPLYIKVFDYDRGLTDDFMGSAFVDLS 87 (121)
T ss_pred CCCCeEEEEE--CCEEE---EEeeeccCCCCCccceeEEEEec--CC--CCeEEEEEEeCCCCCCCcceEEEEEEHH
Confidence 3566887764 44322 23433333456899999999864 32 5789999999876656779999999983
No 112
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=94.70 E-value=0.26 Score=46.74 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=48.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.++-||.+.+ +++ ...+|..+.-+.++.|||.+.|++. ....|.|+|||....+....+|.+.++|
T Consensus 21 ~~dPyv~v~~--~~~---~~~kT~v~~~t~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l 86 (125)
T cd04021 21 KPDPYVEVTV--DGQ---PPKKTEVSKKTSNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDL 86 (125)
T ss_pred CCCeEEEEEE--CCc---ccEEeeeeCCCCCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEH
Confidence 3566887765 454 2335554444567999999999864 4578999999987655678999999997
No 113
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.66 E-value=0.27 Score=47.59 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ +++ ..+|..+.-+.++.|||.+.|++. + +.+..|.|.|||.....+...+|.++++|=+
T Consensus 35 ~~DPYv~v~~--~~~----~~kT~vi~~t~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 35 KSDPYCEVSM--GSQ----EHKTKVVSDTLNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CcCcEEEEEE--CCE----eeeccccCCCCCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4666887765 443 235655555567999999999874 3 4467999999997655556799999999954
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=94.56 E-value=0.24 Score=49.44 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=52.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.+|-||.+.+..++... ...+|.-+.-+.++.|||.+.|++ ...+| .+..|.|+||+...-++...+|.+.+++
T Consensus 47 ~~DPYVkv~l~~~~~~~-~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l 121 (162)
T cd04020 47 TSDSFVKCYLLPDKSKK-SKQKTPVVKKSVNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGL 121 (162)
T ss_pred CCCCEEEEEEEcCCCCC-cceeCCccCCCCCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence 45669999887554322 123455444345689999999984 45666 3578999999977655677899999887
No 115
>PLN02223 phosphoinositide phospholipase C
Probab=94.55 E-value=0.2 Score=58.77 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=61.2
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L-~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..+|.||+++|+ |-|- +...+|....=+-++.|||..+|+|.. |--|.|.|+|||.....+...+|.+++|+
T Consensus 433 s~~DpyV~VeI~--Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv-- 505 (537)
T PLN02223 433 SKPDLYVRISIA--GVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV-- 505 (537)
T ss_pred CCCCeEEEEEEe--eccCCcceeEEEeCCCCcCceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch--
Confidence 457889999997 2121 122234322111237799999999864 77899999999987555566899999998
Q ss_pred CCccccccceeeeeec
Q 003651 130 SKMQLKTGKQKLRLWP 145 (805)
Q Consensus 130 ~~~~Lr~G~~~L~lwp 145 (805)
..||+|...+.|..
T Consensus 506 --~~Lr~GyR~VpL~~ 519 (537)
T PLN02223 506 --SELIEGIRAVPLYD 519 (537)
T ss_pred --HHhcCCceeEeccC
Confidence 57999999987753
No 116
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.50 E-value=0.34 Score=44.91 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ +++ ..+|..+.-+.++.|||.+.|++.- +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 20 ~~dPyv~v~~--~~~----~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 20 LSDPYVKFRL--GNE----KYKSKVCSKTLNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCcEEEEEE--CCE----eEecccccCCCCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 3566888776 443 2355555445678999999998652 3478999999998765567899999999844
No 117
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=94.47 E-value=0.45 Score=45.16 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
..+-||++.+-..+. ....-+|..+.-..++.|||.+.|++.-.+ .+..|.|+||+.....+...+|.+.++|
T Consensus 33 ~~dpyv~v~~~~~~~-~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l 105 (131)
T cd04026 33 LSDPYVKLKLIPDPK-NETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGV 105 (131)
T ss_pred CCCCcEEEEEEcCCC-CCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeH
Confidence 356788888864332 122334555444557899999999976444 4578999999976545667999999997
No 118
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.38 E-value=0.16 Score=46.89 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccC-cCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD-LTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~d-LP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+- ++ ...|..+.-+.++.|||.+.|++.... -..++.|.|+|||....++...+|.++++|=+
T Consensus 20 ~~dpyv~v~~~--~~----~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 20 NIDPVVKVEVG--GQ----KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCEEEEEEC--CE----eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 35668887764 43 335555544457899999999976533 22467899999997655556789999999864
No 119
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.34 E-value=0.34 Score=44.78 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+ +++. .-+|..+.-+.++.|||-+.|++.-. .+..|.|.||+.....+...||.+.+++=+
T Consensus 19 ~~dpyv~v~~--~~~~---~~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 19 KSDPFVKFYL--NGEK---VFKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCCeEEEEE--CCCc---ceeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 3466888876 3322 23565555456789999999986532 567899999998766566789999999865
No 120
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=94.33 E-value=0.39 Score=45.07 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=49.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ ++.. .+|..+.-+.++.|||.+.|++.-. .++.|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~DPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 20 TSDPFVRVFY--NGQT----LETSVVKKSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred CcCceEEEEE--CCEE----EeceeecCCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 3556887764 4432 3555554456689999999997553 378899999997655566789999999843
No 121
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=94.28 E-value=0.34 Score=46.01 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.+|-||.+.+ ++... .+|..+. +.++.|||.+.|++.-.++ ..+.|.||+-....+...||.+.++|-+-
T Consensus 21 ~~DPYv~v~l--~~~~~---~kT~v~~-~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 21 VPHPYCVISL--NEVKV---ARTKVRE-GPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCCeeEEEEE--CCEeE---EEeecCC-CCCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhHc
Confidence 3577888888 44332 2344333 4568899999998532222 46889999976656678999999998753
No 122
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=94.22 E-value=0.3 Score=46.19 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=51.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ ++. ....+|..+.-+.++.|||-+.|++. +.+..|.|.|||.....+...+|.+.++|=+
T Consensus 17 ~~dpyv~v~~--~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 17 SSNPYCVLEM--DEP--PQKYQSSTQKNTSNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CcCCEEEEEE--CCC--CcEEEeEEEecCCCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 5666888876 221 12245655554567999999999974 3467899999998876667899999999854
No 123
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.20 E-value=0.38 Score=45.51 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.++-||.+.+ ++. +.+|....-+.++.|||.+.|++.-.. ..+..|.|+||+.....+...+|.+.++|
T Consensus 14 ~~Dpyv~v~~--~~~----~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 14 KGDRIAKVTF--RGV----KKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred CCCCEEEEEE--CCE----eeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 3555777765 443 345655544457899999999975433 46788999999987655556888887765
No 124
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=94.02 E-value=0.43 Score=45.81 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=49.4
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCC------CCceeEeEEE
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG------KDERLVGGTT 124 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~------~~~~~vG~~~ 124 (805)
..+|-||.+.+ |++. .+|+-+.-+.++.|||.+.|++.- | ++.|.|+||+...- .+...+|.+.
T Consensus 22 g~sDPYv~i~~--g~~~----~rTk~~~~~~nP~WnE~f~f~v~~---~-~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~ 91 (126)
T cd08379 22 GSTDAYCVAKY--GPKW----VRTRTVEDSSNPRWNEQYTWPVYD---P-CTVLTVGVFDNSQSHWKEAVQPDVLIGKVR 91 (126)
T ss_pred CCCCeeEEEEE--CCEE----eEcCcccCCCCCcceeEEEEEecC---C-CCEEEEEEEECCCccccccCCCCceEEEEE
Confidence 35677998885 5553 356655556679999999999752 2 35899999997653 2567899999
Q ss_pred EEee
Q 003651 125 ILLF 128 (805)
Q Consensus 125 ~~LF 128 (805)
++|=
T Consensus 92 i~l~ 95 (126)
T cd08379 92 IRLS 95 (126)
T ss_pred EEHH
Confidence 9863
No 125
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.98 E-value=0.25 Score=50.52 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCCCccccccEEecccccCcCccCceEEEEEeecCC---------CCceeEeEEEEEeecCCccccccceeeeeec
Q 003651 79 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------KDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (805)
Q Consensus 79 f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~---------~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp 145 (805)
..+.+.|+|.|++.+.. +|....-|-||+|.++.. ..+.++|-+-+||+...++|..|.+.|.+-.
T Consensus 65 h~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~ 139 (185)
T cd08697 65 HNQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVAN 139 (185)
T ss_pred cCCCCccceeEEEecCC-cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEe
Confidence 35668899998887664 456788999999998721 1246899999999998999999999999865
No 126
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=93.97 E-value=0.2 Score=47.82 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
..+|-||.+.+ +++.. -+|+.+.-+.++.|||-++|++. ..+.|.|.||+-....+...+|.+.++|=+
T Consensus 33 g~~dpyv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 33 QLLDPYVSIDV--DDTHI---GKTSTKPKTNSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred cCcCcEEEEEE--CCEEE---eEEeEcCCCCCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 34677888876 45432 23443333567889999999985 568999999986544455689999999843
No 127
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=93.95 E-value=0.49 Score=59.01 Aligned_cols=120 Identities=23% Similarity=0.356 Sum_probs=90.9
Q ss_pred cccccceEEEEEEecCCCeeeEEEEeCCCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeeccCCChh
Q 003651 544 FKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLA 623 (805)
Q Consensus 544 ~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~~tl~ 623 (805)
-+..+.=..+.|. +| ..+++|. -+|+-|+...+++..+++- +....+.+++|+.-+ +.|..|+|+..+..
T Consensus 99 H~~g~~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~----~~~~~~~~~~~l~~~-~ygw~EfI~~~~c~ 168 (825)
T cd04792 99 HNGGRVVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSF----LGALPLRTPKVLDRG-DYGWEEFIEHQPCQ 168 (825)
T ss_pred CCCCceEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhc----CCccccccceeeecC-CcceEEeecCCCCC
Confidence 3344555666663 34 3589998 7899999999888887763 222344778888655 68999999964322
Q ss_pred hhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccccCC
Q 003651 624 QKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 687 (805)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~ 687 (805)
+ ++-.++|-+-++++..+.|+||.-|=|.+|| |..-++-+=||+--+|..
T Consensus 169 ~-------------~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~ 218 (825)
T cd04792 169 S-------------KEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHP 218 (825)
T ss_pred C-------------HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCC
Confidence 2 3467899999999999999999999999999 777788999999766654
No 128
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=93.87 E-value=0.62 Score=46.40 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=55.8
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc------CcCccCceEEEEEeecCC-CCceeEeEE
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------DLTAHSQLALTVWDVSCG-KDERLVGGT 123 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~------dLP~~a~L~~ti~~~~~~-~~~~~vG~~ 123 (805)
..+|-||...+...+.. ....+|+.+.-+.++.|||.++|+|.-. .+++.+ |.|+||+..+- .+...+|.+
T Consensus 23 ~~~DpYVk~~l~~p~~~-~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 23 KDLDTYVKFEFPYPNEE-PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCeEEEEEEecCCCC-CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEEE
Confidence 35788999997544321 1244677766677899999999998655 477655 99999997642 356789999
Q ss_pred EEEeec
Q 003651 124 TILLFN 129 (805)
Q Consensus 124 ~~~LFd 129 (805)
.++|=+
T Consensus 101 ~i~L~~ 106 (155)
T cd08690 101 QVKLEP 106 (155)
T ss_pred EEEccc
Confidence 888844
No 129
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=93.77 E-value=0.19 Score=47.12 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCceEEEEEEEeCC-cccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecC----CCCceeEeEEEEE
Q 003651 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----GKDERLVGGTTIL 126 (805)
Q Consensus 52 ~~~l~V~~~l~~~~-~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~----~~~~~~vG~~~~~ 126 (805)
.+|-||.+.+..+. .......+|..+.-+.++.|||.+.|++.. +....|.|.|||... .++...+|.+.++
T Consensus 20 ~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 20 KSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 35668888876543 112234567766656679999999999654 455689999999875 4566789999999
Q ss_pred eec
Q 003651 127 LFN 129 (805)
Q Consensus 127 LFd 129 (805)
+=+
T Consensus 97 l~~ 99 (120)
T cd04048 97 LGE 99 (120)
T ss_pred HHH
Confidence 855
No 130
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=93.69 E-value=0.55 Score=44.15 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.++-||.+.+ ++.. ....+|..+.-+.++.|||-+.|++.-. ....|.|+||+....++...+|.+.++|
T Consensus 21 ~~Dpyv~v~~--~~~~-~~~~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 21 LSDPYVTLVD--TNGK-RRIAKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCceEEEEE--CCCC-eeeecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 4566887753 2211 0123454444345688999999997552 4678999999987655677899999987
No 131
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=93.48 E-value=0.55 Score=44.07 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=49.2
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
++-||.+.+ +++ ..+|..+.-+.++.|||.+.|++.- +.+..|.|+|||.....+...+|.++++|=+
T Consensus 24 ~dPyv~v~~--~~~----~~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 24 SDPYAILSV--GAQ----RFKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCeEEEEE--CCE----EEecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 455776654 443 2356555445678999999998753 5678999999997765566789999999854
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=93.43 E-value=0.48 Score=56.24 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=61.3
Q ss_pred CCCceEEEEEEEeCCcccc-cceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 51 RRPELYVECALYIDGAPFG-LPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~-~p~~T~~~~f~~~~~W-newl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
...+.||+++|+- -|.. ...+|..+.-.-++.| ||.++|++. +|.-|.|.|+|+|.........+|+.++|+
T Consensus 456 ~~~DpyV~Vei~G--~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv- 529 (567)
T PLN02228 456 SPPDFFVKIGIAG--VPRDTVSYRTETAVDQWFPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPL- 529 (567)
T ss_pred CCCCcEEEEEEEe--cCCCCCcceeeccCCCCCceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcch-
Confidence 4578899999972 1211 1224443221124889 999999976 577899999999976544566889999998
Q ss_pred cCCccccccceeeeee
Q 003651 129 NSKMQLKTGKQKLRLW 144 (805)
Q Consensus 129 d~~~~Lr~G~~~L~lw 144 (805)
..||+|...+.|.
T Consensus 530 ---~~Lr~GYR~VpL~ 542 (567)
T PLN02228 530 ---PELKSGVRAVRLH 542 (567)
T ss_pred ---hHhhCCeeEEEcc
Confidence 5789999999885
No 133
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=93.32 E-value=0.6 Score=43.36 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCceEEEEEEEeCCcccccceeccccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~-f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+ +++ ..+|..+. -+.++.|||-++|++.. +.+..|.|+|||....+ ...+|.+.+++=+
T Consensus 21 ~~dpyv~v~~--~~~----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 21 KQDPYCVLRI--GGV----TKKTKTDFRGGQHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCceEEEEE--CCC----ccccccccCCCCCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 3566888875 331 12343322 13468999999999765 35678999999976543 6789999999854
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=93.22 E-value=0.72 Score=43.35 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeCCcccccceeccccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~-f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+ ++.. ..|+... -+.++.|||-+.|++.-.+...+..|.|.||+.....+...+|.+.++|=+
T Consensus 21 ~~dpyv~v~~--~~~~----~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 21 KIDPYVIIQC--RTQE----RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred CcCceEEEEE--CCEe----eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 3556888765 3322 2343332 145689999999998776655678899999998655556789999999844
No 135
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.91 E-value=0.26 Score=50.56 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=55.3
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCCC--CceeEeEEEEEeecCC-ccccccceeeeeecCC
Q 003651 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSK-MQLKTGKQKLRLWPGK 147 (805)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~-~~Lr~G~~~L~lwp~~ 147 (805)
.+.+.|||.|.+.|...+.+ .+-|.|+++-++... ++.|||-+=++|++.+ -+|+.|.+.|.+|...
T Consensus 63 ~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d 132 (189)
T cd08695 63 NNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCD 132 (189)
T ss_pred CCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecc
Confidence 45688999999999887765 689999999877532 3479999999999984 6899999999999643
No 136
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=92.88 E-value=0.36 Score=47.37 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=49.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.+|-||.+.+ +++ ..+|+.+.-+.++.|||-++|++. + | ...|.|+|||.....+...+|.+.+++
T Consensus 21 ~sDPYV~v~~--g~~----~~kT~vvk~t~nP~WnE~f~f~i~--~-~-~~~l~~~V~D~d~~~~dd~iG~a~i~l 86 (145)
T cd04038 21 SSDPYVVLTL--GNQ----KVKTRVIKKNLNPVWNEELTLSVP--N-P-MAPLKLEVFDKDTFSKDDSMGEAEIDL 86 (145)
T ss_pred CcCcEEEEEE--CCE----EEEeeeEcCCCCCeecccEEEEec--C-C-CCEEEEEEEECCCCCCCCEEEEEEEEH
Confidence 4667888775 443 346666554567999999999974 2 2 778999999987655667899999877
No 137
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.82 E-value=0.39 Score=44.51 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=47.8
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
++-||.+.+ +++. ..+|+.+.-+.++.|||.+.|++. + +.+..|.|.||+-..- +...+|.+.++|=
T Consensus 13 ~dPYv~v~v--~~~~---~~kT~v~~~t~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 13 LSPYAELYL--NGKL---VYTTRVKKKTNNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLN 79 (111)
T ss_pred CCceEEEEE--CCEE---EEEEeeeccCCCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence 566888877 4432 224444444567889999999874 2 3577899999997654 5678999999963
No 138
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.80 E-value=0.36 Score=47.58 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccc--------cCcC----ccCceEEEEEeecCCCCcee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKY--------RDLT----AHSQLALTVWDVSCGKDERL 119 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~--------~dLP----~~a~L~~ti~~~~~~~~~~~ 119 (805)
.+|-||.+.+..+.+-- ...+|+-+.-+.++.|||.+.|++.. -++| ....|.|+||+.....+...
T Consensus 18 ~sDPYV~V~l~~~~~k~-~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 18 TCDPYASVTLIYSNKKQ-DTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCceEEEEEeCCcccC-cccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 46779998887544321 12245544445578899999999852 1233 24679999999876556679
Q ss_pred EeEEEEEeec
Q 003651 120 VGGTTILLFN 129 (805)
Q Consensus 120 vG~~~~~LFd 129 (805)
+|.+.++|=+
T Consensus 97 LG~v~i~l~~ 106 (148)
T cd04010 97 LGEVRIPLRG 106 (148)
T ss_pred eEEEEEeccc
Confidence 9999998743
No 139
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=92.73 E-value=0.85 Score=43.10 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ +++ ..+|.-..-+.++.|||.+.|++. -+.+..|.|+|||.... +...+|.++++|=+
T Consensus 16 ~~Dpyv~v~l--~~~----~~kT~v~~~t~nP~Wne~F~f~~~---~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 16 SNDPVVEVKL--GNY----KGSTKAIERTSNPEWNQVFAFSKD---RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred cCCCEEEEEE--CCc----cccccccCCCCCCccceEEEEEcC---CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 3566888886 332 335554444557899999999853 23678899999997643 55689999988754
No 140
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.60 E-value=0.37 Score=57.88 Aligned_cols=107 Identities=22% Similarity=0.385 Sum_probs=71.6
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCccc-ccceecccccC-CCCccccccEEecccc
Q 003651 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPF-GLPMRTRLESM-GPMYCWNEPITLSTKY 95 (805)
Q Consensus 18 v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L-~~p~~T~~~~f-~~~~~Wnewl~fpI~~ 95 (805)
++|||.+=+|..+.... +.......++++|+ .+ |-|. |..-+|.++.- .-.+.|+|.++|++.+
T Consensus 618 L~IkI~sGq~~~~~~~~----------~~~~~~~dP~v~Ve---I~-Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~v 683 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGK----------TKFGEISDPDVYVE---IA-GVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSV 683 (746)
T ss_pred eEEEEEecCcccCCCCC----------CcccccCCCCEEEE---Ec-ccccchhhhhceeeccCCcCcccCCeEEEEEec
Confidence 66777766665443211 22233345777777 22 3232 22334554331 1236799999999998
Q ss_pred cCcCccCceEEEEEeecCCCCceeEeEEEEEeecCCccccccceeeeeec
Q 003651 96 RDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (805)
Q Consensus 96 ~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp 145 (805)
-+| |.|.|.|+|....++.-.+|-+++|+ ..|++|...+++.-
T Consensus 684 PEL---AliRF~V~d~d~~~~ddF~GQ~tlP~----~~L~~GyRhVpL~~ 726 (746)
T KOG0169|consen 684 PEL---ALIRFEVHDYDYIGKDDFIGQTTLPV----SELRQGYRHVPLLS 726 (746)
T ss_pred cce---eEEEEEEEecCCCCcccccceeeccH----HHhhCceeeeeecC
Confidence 776 88999999988777778899999998 57999999998853
No 141
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=92.49 E-value=0.49 Score=43.91 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=49.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+ ++ ...+|..+.-+.++.|||.+.|++.- +.+..|.|+|||.... +...+|.+.++|=+
T Consensus 27 ~~dPyv~v~~--~~----~~~kT~~~~~t~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 27 KSDPYVIVRV--GA----QTFKSKVIKENLNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred CcCCEEEEEE--CC----EeEEccccCCCCCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHH
Confidence 4566888875 33 23456555445678999999988632 3578999999997655 56789999999855
No 142
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=92.44 E-value=0.42 Score=43.85 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=50.0
Q ss_pred CCceEEEEEEEeCC-cccccceecccccCCCCccccccEEecccccCcC---ccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLT---AHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~-~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP---~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
.+|-||.+.+..++ +.. ...+|....-+.++.|| +|.+.+.+|. .+..|.|.|||....++...+|.+++++
T Consensus 20 ~~DPyv~v~~~~~~~~~~-~~~kT~vi~~t~nP~Wn---~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 20 KSDPFLEISRQSEDGTWV-LVYRTEVIKNTLNPVWK---PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCeeEEEEEECCCCCEE-EEEeeeEeccCCCCceE---EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 45668887765332 222 23356655555678999 3555555554 3689999999987766678999999988
Q ss_pred ec
Q 003651 128 FN 129 (805)
Q Consensus 128 Fd 129 (805)
=+
T Consensus 96 ~~ 97 (110)
T cd04047 96 DE 97 (110)
T ss_pred HH
Confidence 54
No 143
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=92.39 E-value=0.47 Score=45.17 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f-~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.+|-||.+.+ |++- .+|.-..- ..++.|||.+.|++.- -...|.|+|||-..-++..++|.+.++|=+
T Consensus 21 ~sDPYv~i~l--g~~~----~kT~v~~~~~~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~- 89 (121)
T cd04016 21 RMDPYCRIRV--GHAV----YETPTAYNGAKNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIPE- 89 (121)
T ss_pred CCCceEEEEE--CCEE----EEeEEccCCCCCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECch-
Confidence 5777999988 4432 24544322 3578999999999742 135699999997765566799999998842
Q ss_pred Cccccccceeeeeec
Q 003651 131 KMQLKTGKQKLRLWP 145 (805)
Q Consensus 131 ~~~Lr~G~~~L~lwp 145 (805)
.+..|.. ...|-
T Consensus 90 --~~~~g~~-~~~W~ 101 (121)
T cd04016 90 --SVFNGET-LDDWY 101 (121)
T ss_pred --hccCCCC-ccccE
Confidence 2334432 34554
No 144
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=92.38 E-value=1.1 Score=41.56 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.+|-||.+.+ ++.. .+|..+.-+.++.|||.+.|++. ++ ...|.|+||+.....+...+|.+.+++-+
T Consensus 21 ~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 21 KSDPFCVLEL--VNAR----LQTHTIYKTLNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCCcEEEEEE--CCEe----eecceecCCcCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 3566888776 3321 35554444557899999999864 32 57899999997654566799999999855
No 145
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.25 E-value=0.5 Score=45.74 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc------------CcCccCceEEEEEeecCCCCcee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------------DLTAHSQLALTVWDVSCGKDERL 119 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~------------dLP~~a~L~~ti~~~~~~~~~~~ 119 (805)
.++-||++.+-...+. ..-+|..+.-+.++.|||-+.|++.-. +-.....|.|+||+.....+...
T Consensus 18 ~~dPyv~v~~~~~~~~--~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 18 TCDPFARVTLNYSSKT--DTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCcEEEEEEecCCcC--CeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 4677888877532111 223555555456789999999997654 34467789999999876556788
Q ss_pred EeEEEEEee
Q 003651 120 VGGTTILLF 128 (805)
Q Consensus 120 vG~~~~~LF 128 (805)
||.+.++|=
T Consensus 96 IG~~~i~l~ 104 (137)
T cd08675 96 LGEVRIPLQ 104 (137)
T ss_pred EEEEEEehh
Confidence 999999853
No 146
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.05 E-value=0.45 Score=46.17 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCc--------------------CccCceEEEEEe
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDL--------------------TAHSQLALTVWD 110 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dL--------------------P~~a~L~~ti~~ 110 (805)
..+|+||.+-|-.. +.-..-+.+-|.+......||+.+.||+.|... =..+.|.++|||
T Consensus 23 ~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 23 KMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred cccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 46999999988764 233334455666666668899999999888321 235788999998
Q ss_pred ecCCCCceeEeEEEEEee
Q 003651 111 VSCGKDERLVGGTTILLF 128 (805)
Q Consensus 111 ~~~~~~~~~vG~~~~~LF 128 (805)
...-.....+|.+.++|=
T Consensus 102 ~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 102 NDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CcccCCCCcceEEEEEhh
Confidence 775444557888777763
No 147
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=91.80 E-value=1.1 Score=44.43 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=39.2
Q ss_pred eecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 72 MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 72 ~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
-+|..+.-+.++.|||.+.|++. ++ .+..|.|+|||.. ...+|.+.+++=+
T Consensus 91 ~kT~v~~~tlnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 91 KVTEVKPQTLNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred EecceecCCCCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 35655555667999999999973 33 4789999999975 5689999999844
No 148
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=91.65 E-value=1.5 Score=41.33 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+ +++.+ -+|....-+.++.|||-+.|++.- -...|.|.||+...-++...+|.+.+++-
T Consensus 20 ~~DPYv~v~~--~~~~~---~kT~v~~~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 20 SSDPYCIVKV--DNEVI---IRTATVWKTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCCceEEEEE--CCEee---eeeeeEcCCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 3566887765 45433 245544445678999999998742 23689999999765555678999999864
No 149
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=91.47 E-value=0.71 Score=45.89 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=48.0
Q ss_pred CCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
...+|-||++++ ++... .+|.-+.-+.++.|||.+.|++. ...+.|.|+|||-..- +...||.+++++
T Consensus 55 ~g~sDPYv~V~l--~~~~~---~rT~v~~~~~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l 122 (158)
T cd04015 55 KITSDPYATVDL--AGARV---ARTRVIENSENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPV 122 (158)
T ss_pred CCCcCeEEEEEE--CCeEe---eEEEEeCCCCCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEh
Confidence 345788999987 44333 24544443457899999999864 2346899999996543 346899999998
No 150
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=0.86 Score=52.52 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=59.0
Q ss_pred cCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEE
Q 003651 49 EERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTI 125 (805)
Q Consensus 49 ~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (805)
....+|-||.+.+.++++.+..- .|+.+.-+.++.|||.+.|.|.-.+|-. +.|.|+|||...-+....||++.+
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~kk-kT~~~~~~~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSKK-KTSVKKKTLNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCCCCCccEEEEEecCCceeeee-eeecccCCCCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEe
Confidence 34456789999999999777543 5666665667889999999999889987 899999999887555557886544
No 151
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=90.73 E-value=1.1 Score=42.70 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeec-------CCCCceeEeEEEE
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS-------CGKDERLVGGTTI 125 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~-------~~~~~~~vG~~~~ 125 (805)
+|-||+..+-.+++.- ....|.-+.-+.++.|||-.+|++. ..-.|.|++||.. ..++..++|.+.+
T Consensus 15 sDPYV~l~v~~~~~~~-~~~KTk~i~~TlnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 15 ANLYCTLEVDSFGYFV-KKAKTRVCRDTTEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCEEEEEEcCccccc-eeeeeeeecCCCCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 6668888765544321 2335555444567899999999975 2448999999974 1234567888877
Q ss_pred Ee
Q 003651 126 LL 127 (805)
Q Consensus 126 ~L 127 (805)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 76
No 152
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=90.43 E-value=1 Score=43.81 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=50.8
Q ss_pred CCceEEEEEEEeCCccc-------ccceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCC---ceeE
Q 003651 52 RPELYVECALYIDGAPF-------GLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLV 120 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L-------~~p~~T~~~~f~~~~~W-newl~fpI~~~dLP~~a~L~~ti~~~~~~~~---~~~v 120 (805)
.+|=||.+.+.-+++.+ ...-+|..+.-+-++.| ||-+.|++.. +..|.|+|||....+. ...+
T Consensus 20 ~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 20 NPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceE
Confidence 45668988887655542 12345666554557899 9999999853 3479999999654322 4689
Q ss_pred eEEEEEeec
Q 003651 121 GGTTILLFN 129 (805)
Q Consensus 121 G~~~~~LFd 129 (805)
|.+.++|=+
T Consensus 95 G~~~i~l~~ 103 (137)
T cd08691 95 GKLSIPVQR 103 (137)
T ss_pred EEEEEEHHH
Confidence 999998743
No 153
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=89.88 E-value=2.5 Score=40.07 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+. .+++ ...|+.+.-+.++.|||-+.|.+. + .+..|.|+|||.... +...+|.+++++-.
T Consensus 23 ~~dPyv~v~--~~~~----~~kT~v~~~t~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 23 GADPYVIIK--CEGE----SVRSPVQKDTLSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred CcCccEEEE--ECCE----EEEeCccCCCCCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 355577764 3454 346666555567999999988753 3 367899999996543 45789999999843
No 154
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=89.71 E-value=1.7 Score=41.75 Aligned_cols=69 Identities=6% Similarity=0.218 Sum_probs=46.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-ccc----CcCc-cCceEEEEEeecCCCCceeEeEEEE
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYR----DLTA-HSQLALTVWDVSCGKDERLVGGTTI 125 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI-~~~----dLP~-~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (805)
.++-||.+.+. +. ..+|..+.-+.++.|||.++|++ .+. ++.. ...|.|+|||....++...+|.+.+
T Consensus 21 ~~dpyv~v~~~--~~----~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 21 LSDPFARVSFL--NQ----SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred CCCCEEEEEEC--Ce----eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEe
Confidence 45668888763 32 33555554456789999999984 332 2322 3569999999876556679999986
Q ss_pred E
Q 003651 126 L 126 (805)
Q Consensus 126 ~ 126 (805)
.
T Consensus 95 ~ 95 (135)
T cd04017 95 K 95 (135)
T ss_pred e
Confidence 3
No 155
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=88.76 E-value=4 Score=37.50 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
.++-||.+.+ +++.. -+|+-+.- .++.|||.+.|++.-.++ ....|.+.+|+-....+...+|.+.+....
T Consensus 17 ~~dpyv~v~~--~~~~~---~kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 17 TRDPYCTVSL--DQVEV---ARTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCceEEEEE--CCEEe---EecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 4666887776 44322 24444333 568999999999865444 235677788886543344567776665543
No 156
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=88.36 E-value=3.4 Score=39.11 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=44.3
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCC-----------CCceeEe
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG-----------KDERLVG 121 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~-----------~~~~~vG 121 (805)
+|-||.+.+ +++ ..+|..+.-+.++.|||.+.|++.- | ...|.|.|||.... ++...+|
T Consensus 22 ~DPyv~v~~--~~~----~~kT~~v~~t~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 22 SDPYVTVQV--GKT----KKRTKTIPQNLNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred cCcEEEEEE--CCE----eeecceecCCCCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 455777765 332 2355554444568899999998642 2 45899999997531 2456899
Q ss_pred EEEEEee
Q 003651 122 GTTILLF 128 (805)
Q Consensus 122 ~~~~~LF 128 (805)
.+.+++=
T Consensus 92 ~~~i~l~ 98 (127)
T cd04027 92 QTIIEVR 98 (127)
T ss_pred EEEEEhH
Confidence 9999873
No 157
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=88.04 E-value=2.6 Score=41.58 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=48.6
Q ss_pred ceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC----CceeEeEEEEEeec
Q 003651 54 ELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFN 129 (805)
Q Consensus 54 ~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd 129 (805)
+.|++++| |+... .+|+-+.-+.++.|+|-..|+ ++|.-+.|+|+||...+.. +...||.+.|++=+
T Consensus 28 ~~Y~~i~L--d~~~v---aRT~v~~~~~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 28 RYYCELCL--DKTLY---ARTTSKLKTDTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CceEEEEE--CCEEE---EEEEEEcCCCCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 45666554 45433 245555545678899999995 7777788999999765432 45799999999876
Q ss_pred C
Q 003651 130 S 130 (805)
Q Consensus 130 ~ 130 (805)
-
T Consensus 99 l 99 (146)
T cd04013 99 V 99 (146)
T ss_pred h
Confidence 3
No 158
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=87.97 E-value=2.1 Score=42.25 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=57.8
Q ss_pred CceEEEEEEEe-CCcccccceecccccC--CCCccccccEEecccccCcCccCceEEEEEeecCCCCce-eEeEEEEEee
Q 003651 53 PELYVECALYI-DGAPFGLPMRTRLESM--GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDER-LVGGTTILLF 128 (805)
Q Consensus 53 ~~l~V~~~l~~-~~~~L~~p~~T~~~~f--~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~-~vG~~~~~LF 128 (805)
.+=++++.|.+ +|++++.+-.|+...- .+.+.||..+.+...+.+||.+|.+-|.+-.+...++.. .-+|+-+.+
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~- 109 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL- 109 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG-
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh-
Confidence 44588999996 8888988877766422 234668999999999999999999999999887654443 567877766
Q ss_pred cCCccccccceeeeeec
Q 003651 129 NSKMQLKTGKQKLRLWP 145 (805)
Q Consensus 129 d~~~~Lr~G~~~L~lwp 145 (805)
..++.|...+.+|.
T Consensus 110 ---dei~~g~~~lely~ 123 (147)
T PF14186_consen 110 ---DEIKPGPVVLELYK 123 (147)
T ss_dssp ---GG--SEEEEE--EE
T ss_pred ---hhccCCceeeehhc
Confidence 78899999999985
No 159
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=87.88 E-value=1.8 Score=40.79 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
.+|-||.+.+ +++.. -+|.-+.-+.++.|||-.+|++.-. ...|.|+||+...-.+...+|.+.++|=
T Consensus 21 ~sDpYv~v~l--~~~~~---~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~ 88 (121)
T cd08401 21 MRDCYCTVNL--DQEEV---FRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKE 88 (121)
T ss_pred CcCcEEEEEE--CCccE---EEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence 4566888877 44432 2333333345688999999997621 3589999999876556678999999873
No 160
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=83.38 E-value=3.6 Score=39.69 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=43.6
Q ss_pred EEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 56 YVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 56 ~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
||.+++ |++ -..|....- +++.|||-..|.+. + +.+. |.|.||+-.. .....+|.+.++|=+
T Consensus 23 YV~Ik~--g~~----k~kT~v~~~-~nP~WnE~F~F~~~--~-~~~~-L~v~V~dkd~-~~DD~lG~v~i~L~~ 84 (127)
T cd08394 23 YVTLKV--QNV----KSTTIAVRG-SQPCWEQDFMFEIN--R-LDLG-LVIELWNKGL-IWDTLVGTVWIPLST 84 (127)
T ss_pred eEEEEE--CCE----EeEeeECCC-CCCceeeEEEEEEc--C-CCCE-EEEEEEeCCC-cCCCceEEEEEEhHH
Confidence 888777 553 335555443 47899999999973 3 3333 9999999542 355689999999854
No 161
>PLN03008 Phospholipase D delta
Probab=83.32 E-value=2.5 Score=52.17 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=56.1
Q ss_pred CCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
...+|.||++.| ++..+. +|.-+.-..++.|||.++|++.- ..+.|.|+|||-..- +..+||.+.++|=+
T Consensus 74 ~~tSDPYV~I~L--g~~rv~---RTrVi~n~~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~-gaD~IG~a~IPL~~ 143 (868)
T PLN03008 74 VITSDPYVTVVV--PQATLA---RTRVLKNSQEPLWDEKFNISIAH----PFAYLEFQVKDDDVF-GAQIIGTAKIPVRD 143 (868)
T ss_pred cCCCCceEEEEE--CCccee---eEEeCCCCCCCCcceeEEEEecC----CCceEEEEEEcCCcc-CCceeEEEEEEHHH
Confidence 346799999999 443332 56554444578999999999764 357899999996544 34689999998733
Q ss_pred CCccccccceeeeeec
Q 003651 130 SKMQLKTGKQKLRLWP 145 (805)
Q Consensus 130 ~~~~Lr~G~~~L~lwp 145 (805)
|..|... ..|.
T Consensus 144 ----L~~Ge~v-d~Wl 154 (868)
T PLN03008 144 ----IASGERI-SGWF 154 (868)
T ss_pred ----cCCCCce-EEEE
Confidence 4555443 4554
No 162
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=81.84 E-value=1.2 Score=47.14 Aligned_cols=99 Identities=24% Similarity=0.357 Sum_probs=66.2
Q ss_pred CCCCceeccceEEEecC-CCceee-eccC-CC--hhhhcCCCC--CCCCCCh---------HHHHHHHHHHHHHHHHHHH
Q 003651 593 ENLDLHLTPYNVLATGQ-DEGLLE-FIPS-RS--LAQKFHPDE--HGPFGIT---------ATCLETFIKSCAGYSVITY 656 (805)
Q Consensus 593 ~~ldl~l~~Y~Vl~t~~-~~GlIE-~V~~-~t--l~~~~~~~~--~~~~~~~---------~~~~~~F~~S~Agysv~tY 656 (805)
+-+...+.|+.|+--|+ ..|++| ||.+ .+ +-+-..+++ .+++.+. --.....-..+.-++|+=+
T Consensus 64 ~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h~d~~~l~riaVfDi 143 (253)
T TIGR03843 64 EALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHADHPQLRRMAVFDA 143 (253)
T ss_pred HHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeecccccHHHhhhhhhee
Confidence 44567889999997655 578887 4553 22 111000000 0222110 0012334556778899999
Q ss_pred hhccCCCCCCceeEccCCCEEEEEeccccCCCCCC
Q 003651 657 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP 691 (805)
Q Consensus 657 iLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~p 691 (805)
++.=-|||.+|||..++|+++-||=|+.|..++|-
T Consensus 144 ~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 144 LVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred eeecCCCCCCcEeEcCCCcEEEecCceecCCCCcc
Confidence 99999999999999999999999999999988763
No 163
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=77.93 E-value=4.9 Score=40.44 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=45.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (805)
+|=||..+ .|++.+ +|.-..-..++.|||-++|+|+=.. .-|.++|||...-...-.+|-++|+|=
T Consensus 27 SDPyVVl~--lg~q~l----kT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~fs~dD~mG~A~I~l~ 92 (168)
T KOG1030|consen 27 SDPYVVLE--LGNQKL----KTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTFSSDDFMGEATIPLK 92 (168)
T ss_pred CCCeEEEE--ECCeee----eeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCCCcccccceeeeccH
Confidence 33365554 355444 4443333456899999999987544 457899999876666678999999874
No 164
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=72.92 E-value=11 Score=47.83 Aligned_cols=87 Identities=24% Similarity=0.418 Sum_probs=62.0
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccC
Q 003651 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD 97 (805)
Q Consensus 18 v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~d 97 (805)
|.|+|.+.+|.+. +.+-.....|=||+++ +++-- .+ .|+-+.=.-++.|||.+-.+|.
T Consensus 438 v~vkI~sa~~lk~--------------~d~~i~~~vDpyit~~-~~~r~-~g---kT~v~~nt~nPvwNEt~Yi~ln--- 495 (1227)
T COG5038 438 VEVKIKSAEGLKK--------------SDSTINGTVDPYITVT-FSDRV-IG---KTRVKKNTLNPVWNETFYILLN--- 495 (1227)
T ss_pred EEEEEeeccCccc--------------ccccccCCCCceEEEE-ecccc-CC---ccceeeccCCccccceEEEEec---
Confidence 5799999999544 2223344566688888 44321 11 4444443456889999999988
Q ss_pred cCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 98 LTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 98 LP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
..+..|.+.+||-.....+..+|.+-+.|
T Consensus 496 -s~~d~L~LslyD~n~~~sd~vvG~~~l~L 524 (1227)
T COG5038 496 -SFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524 (1227)
T ss_pred -ccCCceeEEEEeccccCCcceeeeEEech
Confidence 78899999999977766778899997765
No 165
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=72.80 E-value=2.3 Score=50.34 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=52.4
Q ss_pred CceeccceEEE--ecCCCceeeeccCCChhhhcCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcc
Q 003651 596 DLHLTPYNVLA--TGQDEGLLEFIPSRSLAQKFHPDEHGPFGIT-ATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD 672 (805)
Q Consensus 596 dl~l~~Y~Vl~--t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~-~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~ 672 (805)
+-.+...+|.. |++++=.+|||+...+.+...-.. -|.. +..-+++++++--. +...=+==+|=|++||+++.
T Consensus 225 ~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~---~g~d~k~ia~~~~~~f~~q-~~~dgffHaDpHpGNi~v~~ 300 (517)
T COG0661 225 DPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS---AGIDRKELAELLVRAFLRQ-LLRDGFFHADPHPGNILVRS 300 (517)
T ss_pred CCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHh---cCCCHHHHHHHHHHHHHHH-HHhcCccccCCCccceEEec
Confidence 34567777774 688888899998765555110000 1111 22334444443222 11122223899999999999
Q ss_pred CCCEEEEEeccc
Q 003651 673 DGRLFHVDFGYI 684 (805)
Q Consensus 673 ~G~lfHIDFG~i 684 (805)
+|+++-+|||.+
T Consensus 301 ~g~i~~lDfGi~ 312 (517)
T COG0661 301 DGRIVLLDFGIV 312 (517)
T ss_pred CCcEEEEcCcce
Confidence 999999999987
No 166
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=70.85 E-value=23 Score=35.51 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=45.0
Q ss_pred ccceEEEecCC--CceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCC
Q 003651 600 TPYNVLATGQD--EGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGR 675 (805)
Q Consensus 600 ~~Y~Vl~t~~~--~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~ 675 (805)
..+.++....+ .=+.|+++..++.+..... . . ..+..+|.....-+-.|+ ||-|++|||++ +|.
T Consensus 60 ~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~--~-----~----~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~ 127 (199)
T TIGR03724 60 NTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEG--N-----D----ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDK 127 (199)
T ss_pred CCCEEEEEECCCCEEEEEEECCccHHHHHhhc--H-----H----HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCc
Confidence 34444444444 3356777766665521110 0 0 344444444444455666 89999999999 899
Q ss_pred EEEEEeccc
Q 003651 676 LFHVDFGYI 684 (805)
Q Consensus 676 lfHIDFG~i 684 (805)
+.-||||..
T Consensus 128 ~~liDfg~a 136 (199)
T TIGR03724 128 LYLIDFGLG 136 (199)
T ss_pred EEEEECCCC
Confidence 999999964
No 167
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=27 Score=40.40 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=58.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecCC
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (805)
.++=||.+.+.-+- -.-.+|.-+--..++.|||.+.|.|.+.+|.. ..|.|+||+...=.....+|-+.++|.+-+
T Consensus 187 ~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 187 TSDPYVKVYLLPDK---KGKFKTRVHRKTLNPVFNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred CCCCeeEEEEcCCC---CCcceeeeeecCcCCccccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCcccc
Confidence 45668888877443 12345665555667889999999999999975 589999999876456679999999977644
Q ss_pred c
Q 003651 132 M 132 (805)
Q Consensus 132 ~ 132 (805)
-
T Consensus 263 ~ 263 (421)
T KOG1028|consen 263 L 263 (421)
T ss_pred c
Confidence 3
No 168
>PRK14879 serine/threonine protein kinase; Provisional
Probab=70.68 E-value=34 Score=34.52 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred ccceEEEecCCCc--eeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCC
Q 003651 600 TPYNVLATGQDEG--LLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGR 675 (805)
Q Consensus 600 ~~Y~Vl~t~~~~G--lIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~ 675 (805)
.+..++....+.+ +.|+++..++.+...... . ........++.....-+-.|+ ||-|++|||++ +|.
T Consensus 62 ~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~-------~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~ 132 (211)
T PRK14879 62 NVPAVYFVDPENFIIVMEYIEGEPLKDLINSNG-------M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGK 132 (211)
T ss_pred CCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhcc-------H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCC
Confidence 3344443333333 467787767765221110 0 223334444433222233444 89999999999 899
Q ss_pred EEEEEeccc
Q 003651 676 LFHVDFGYI 684 (805)
Q Consensus 676 lfHIDFG~i 684 (805)
+.-||||..
T Consensus 133 ~~liDf~~a 141 (211)
T PRK14879 133 IYLIDFGLA 141 (211)
T ss_pred EEEEECCcc
Confidence 999999964
No 169
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=70.43 E-value=7.2 Score=35.41 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 003651 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (805)
+++.+||..-+- =.||. +..|+-+-..+.+.+.|.+.|.|+.-+|+. ..|.|.||.. - .+...+||+.++|=+
T Consensus 19 e~~~i~ikg~~t-l~kpv--~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~~-~-~RKe~iG~~sL~l~s 91 (103)
T cd08684 19 ENPTIYIKGILT-LPKPV--HFKSSAKEGSNDIEFMETFVFAIKLQNLQT-VRLVFKIQTQ-T-PRKRTIGECSLSLRT 91 (103)
T ss_pred cCCeeEEEEEEe-cCCCc--cccchhhcCCCChhHHHHHHHHHHHhhccc-eEEEEEeecc-C-CccceeeEEEeeccc
Confidence 567788876443 22222 345777777788999999999999999985 6789999982 2 244689999998743
No 170
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=66.87 E-value=8.4 Score=46.19 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=79.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCceeEccCCCEEEEEeccccCC----CCC-----------CCC--
Q 003651 635 GITATCLETFIKSCAGYSVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYILGR----DPK-----------PFP-- 693 (805)
Q Consensus 635 ~~~~~~~~~F~~S~Agysv~tYiLGI----gDRH~dNImi~~~G~lfHIDFG~ilg~----~p~-----------pf~-- 693 (805)
|+.++-..+|-.- -.-|.+-||=-+ .|=-+||||||.+||+=-.|||.+-|- +.| .+.
T Consensus 724 gIFeE~LARFYIA-EltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~ 802 (1034)
T KOG0608|consen 724 GIFEEDLARFYIA-ELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPS 802 (1034)
T ss_pred ccCHHHHHHHHHH-HHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCc
Confidence 4555555555321 122444444444 477899999999999999999998772 111 010
Q ss_pred -----CCccccHHHHHHhC---------CCCccchhhHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchh---
Q 003651 694 -----PPMKLCKEMVEAMG---------GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEK--- 756 (805)
Q Consensus 694 -----~PFrLT~~mv~~mG---------g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~--- 756 (805)
+-=.|+.-+..+|. -.++.+|-.=.-+...+|..+...-..=+-|++|+++. .|-+...+-.
T Consensus 803 ~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~-~pf~~~tp~~tq~ 881 (1034)
T KOG0608|consen 803 PEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQ-PPFLADTPGETQY 881 (1034)
T ss_pred hhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCC-CCccCCCCCccee
Confidence 11112222222221 11222333333344445555555444444456666653 3544433322
Q ss_pred HHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHhchhHHHHH
Q 003651 757 GILKLQEKFRL----DLDDEACVHFFQDLINESVSALFPQMVE 795 (805)
Q Consensus 757 ~i~~l~~~~~l----~~seeeA~~~~~~lI~~S~~s~~t~v~~ 795 (805)
.|..-+..|.. ++| .||...+++|+..+-.-+.....|
T Consensus 882 kv~nw~~~l~~~~~~~ls-~e~~~li~kLc~sad~RLGkng~d 923 (1034)
T KOG0608|consen 882 KVINWRNFLHIPYQGNLS-KEALDLIQKLCCSADSRLGKNGAD 923 (1034)
T ss_pred eeeehhhccccccccccC-HHHHHHHHHHhcChhhhhcccchh
Confidence 23344444443 344 467778888887664444333333
No 171
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=63.40 E-value=62 Score=35.03 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||||+.+|++.=+|||..
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~ 143 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLC 143 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCC
Confidence 788999999999999999999965
No 172
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=62.88 E-value=4.2 Score=48.38 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCC----CEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDG----RLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G----~lfHIDFG~i 684 (805)
+|=|++||+++.+| ++.=+|||.+
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGiv 311 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIV 311 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceE
Confidence 89999999999888 9999999987
No 173
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=61.93 E-value=4.9 Score=42.69 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=37.8
Q ss_pred eeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEeccc
Q 003651 613 LLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 613 lIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
++|+|+..|+.+... ..+.... .++..--..+-.|+ ||=|++|||++++| +.=||||..
T Consensus 121 vmEyi~G~tL~~~~~--------~~~~~~~----~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~ 181 (232)
T PRK10359 121 LIEYIEGVELNDMPE--------ISEDVKA----KIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGK 181 (232)
T ss_pred EEEEECCccHHHhhh--------ccHHHHH----HHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCc
Confidence 679999888866311 1122222 22222222333344 89999999999999 999999876
No 174
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=60.81 E-value=6.7 Score=38.00 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.2
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
=||=|++|||++ +|++.-||||+.-
T Consensus 111 HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 111 HNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred cCCCCcCcEEEE-CCeEEEEeccccc
Confidence 399999999999 7889999999863
No 175
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=60.59 E-value=25 Score=33.02 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.+.+|||-..||+ | ..-.+.|+|||-.+ ....|||-.=++|.|=
T Consensus 43 rnd~WnE~F~i~V---d--k~nEiel~VyDk~~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 43 RNDRWNEDFEIPV---E--KNNEEEVIVYDKGG-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred CCCcccceEEEEe---c--CCcEEEEEEEeCCC-CeecceeeehhhHHHH
Confidence 5578999988887 3 47889999999754 4678999777777663
No 176
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=60.43 E-value=6.3 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=|++|||++++|++.=||||..
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCe
Confidence 599999999999999999999986
No 177
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=58.42 E-value=75 Score=34.52 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=+++|||++.+|.+.-+|||..
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~ 143 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMC 143 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCC
Confidence 788999999999999999999974
No 178
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=57.04 E-value=7.4 Score=39.31 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=42.5
Q ss_pred ceEEEecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh---hcc--CCCCCCceeEccCCCE
Q 003651 602 YNVLATGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYI---LGI--GDRHLDNLLLRDDGRL 676 (805)
Q Consensus 602 Y~Vl~t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYi---LGI--gDRH~dNImi~~~G~l 676 (805)
..++......=+.|+++..++....... .. ........+...++. .+.|+ -|| +|=|++|||++ +|++
T Consensus 84 p~~~~~~~~~lVmE~~~g~~~~~~~l~~--~~--~~~~~~~~i~~~l~~--~l~~lH~~~givHrDlkP~NIll~-~~~~ 156 (190)
T cd05145 84 PEPILLKKNVLVMEFIGDDGSPAPRLKD--VP--LEEEEAEELYEQVVE--QMRRLYQEAGLVHGDLSEYNILYH-DGKP 156 (190)
T ss_pred ceEEEecCCEEEEEEecCCCchhhhhhh--cc--CCHHHHHHHHHHHHH--HHHHHHHhCCEecCCCChhhEEEE-CCCE
Confidence 3334444444467888754332211111 11 112223344444442 23333 455 89999999999 8999
Q ss_pred EEEEeccc
Q 003651 677 FHVDFGYI 684 (805)
Q Consensus 677 fHIDFG~i 684 (805)
.=||||..
T Consensus 157 ~liDFG~a 164 (190)
T cd05145 157 YIIDVSQA 164 (190)
T ss_pred EEEEcccc
Confidence 99999976
No 179
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=56.62 E-value=72 Score=30.51 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccC-CCCccccccEEecccc
Q 003651 17 PVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKY 95 (805)
Q Consensus 17 ~v~ikI~~Leg~~~~~~~~~l~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~L~~p~~T~~~~f-~~~~~Wnewl~fpI~~ 95 (805)
.+.|.|..|+|... ... .|.+..--|++..+ ...|...+. .....|||-+.+++.+
T Consensus 8 ~~~l~i~~l~~~p~--------------------~~~--~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl 64 (143)
T PF10358_consen 8 QFDLTIHELENLPS--------------------SNG--KVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTL 64 (143)
T ss_pred EEEEEEEEeECcCC--------------------CCC--EEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEE
Confidence 46788888888422 123 33443333444332 223333333 3447899999999655
Q ss_pred cC-----cCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 96 RD-----LTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 96 ~d-----LP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
-- --..-.+.|+|+...+.++...+|.+++.|=++
T Consensus 65 ~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 65 YRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 32 134457889999985433336899999888665
No 180
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=54.69 E-value=7.3 Score=39.69 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEccCCCEEEEEecccc
Q 003651 658 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 658 LGI--gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
.|| ||=|++|||++ +|++.=||||..-
T Consensus 137 ~giiHrDlkP~NIli~-~~~v~LiDFG~a~ 165 (190)
T cd05147 137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSV 165 (190)
T ss_pred CCcccCCCCHHHEEEE-CCcEEEEEccccc
Confidence 377 89999999998 5899999999764
No 181
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=54.40 E-value=87 Score=31.41 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCCceEEEEEEEeCCc-------ccccceecccccC---CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeE
Q 003651 51 RRPELYVECALYIDGA-------PFGLPMRTRLESM---GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLV 120 (805)
Q Consensus 51 ~~~~l~V~~~l~~~~~-------~L~~p~~T~~~~f---~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~v 120 (805)
+.+.||++.++.+|.. .+.-.+|+.+..- .+...||..+++-.+.....-==+|.|+||..+.-+...+.
T Consensus 15 ~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~ 94 (168)
T PF07162_consen 15 EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVE 94 (168)
T ss_pred CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEe
Confidence 3568999999987442 2111223333322 34477999999999988885556999999998876667777
Q ss_pred eEEEEEeecCCccccccceee--eeec
Q 003651 121 GGTTILLFNSKMQLKTGKQKL--RLWP 145 (805)
Q Consensus 121 G~~~~~LFd~~~~Lr~G~~~L--~lwp 145 (805)
|-..+.| -+.-|.+.+ .+|.
T Consensus 95 GYG~~~l-----P~~pG~h~~~v~~wr 116 (168)
T PF07162_consen 95 GYGFCHL-----PTQPGRHEVEVPTWR 116 (168)
T ss_pred EEeEEEe-----CCCCceEEEEEEEEe
Confidence 7777666 345677655 4664
No 182
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=54.36 E-value=2.5e+02 Score=28.79 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=+++||+++.+|++.=+|||..
T Consensus 128 ~dl~p~nilv~~~~~~~l~dfg~~ 151 (263)
T cd06625 128 RDIKGANILRDSAGNVKLGDFGAS 151 (263)
T ss_pred CCCCHHHEEEcCCCCEEEeecccc
Confidence 899999999999999999999965
No 183
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=54.10 E-value=7.7 Score=42.64 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=39.3
Q ss_pred HHHHHHHhhcc----CCCCCCceeEccCCCEEEEEeccccCCCCCCC---CCCccccHHHHHHhC
Q 003651 650 GYSVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYILGRDPKPF---PPPMKLCKEMVEAMG 707 (805)
Q Consensus 650 gysv~tYiLGI----gDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf---~~PFrLT~~mv~~mG 707 (805)
..|.+-|+=+. .|--++|||||++||+=-+||||.=--....+ ..|==|.||++..-|
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ 217 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKG 217 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCC
Confidence 34556676554 58899999999999999999999731110111 234457788876655
No 184
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.67 E-value=38 Score=35.15 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=68.2
Q ss_pred eeccceEEEecCCCce--eeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccC
Q 003651 598 HLTPYNVLATGQDEGL--LEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDD 673 (805)
Q Consensus 598 ~l~~Y~Vl~t~~~~Gl--IE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~ 673 (805)
-+.+.-|..+.++.|. +|+|+...+.+-..... -++.+-..-+----+--|| ||-...||++..+
T Consensus 60 GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~~-----------~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~ 128 (204)
T COG3642 60 GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEAR-----------PDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGG 128 (204)
T ss_pred CCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhcc-----------hHHHHHHHHHHHHHHhcCeecCCCccceEEEeCC
Confidence 3556777888777755 58888766654211110 0111111111111122232 8999999999976
Q ss_pred CCEEEEEecccc-CCCCCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCchHHHHHHH
Q 003651 674 GRLFHVDFGYIL-GRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFH 740 (805)
Q Consensus 674 G~lfHIDFG~il-g~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~ 740 (805)
+ ++-||||.-- .+......+... -+..++.++..+ ++.+...+..+|..-..-+..++..+.
T Consensus 129 ~-i~~IDfGLg~~s~~~Ed~aVDl~---Vleral~sth~~-~e~l~~~f~~gY~~~~~~~~~Vl~~~~ 191 (204)
T COG3642 129 R-IYFIDFGLGEFSDEVEDKAVDLH---VLERALESTHEK-AEELFAAFLEGYREEFGEAKEVLERLE 191 (204)
T ss_pred c-EEEEECCcccccccHHhhhchHH---HHHHHHHhcccc-HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5 9999999542 121111222211 123445555444 677777788888655555555554443
No 185
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.46 E-value=30 Score=39.77 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=50.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (805)
-||=||.++|.-+.+-.+... |.-..-+-++.|||.++|.++=+| ++-||.+.|||-......-..|..++.+
T Consensus 200 lSDPYvk~kliPD~~~~sKqK-TkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgi 272 (683)
T KOG0696|consen 200 LSDPYVKLKLIPDPKNESKQK-TKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGI 272 (683)
T ss_pred CCCcceeEEeccCCcchhhhh-hhhhhhhcCccccceeEEeccccc--ccceeEEEEecccccccccccceecccH
Confidence 467799999997665555432 221112335789999999988877 5668999999987655545566665544
No 186
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=52.92 E-value=23 Score=48.24 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=54.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC-
Q 003651 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS- 130 (805)
Q Consensus 52 ~~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~- 130 (805)
.+|=||.+.+=. .++.+|+.+.-+.++.|||-++|.+ .+-|.+..|.|.|||...-+++ .+|.++++|=+-
T Consensus 1998 ~sdPyv~l~~g~-----~~~~kTkvvk~~~nP~Wne~f~~~~--~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv 2069 (2102)
T PLN03200 1998 NTNAFCKLTLGN-----GPPRQTKVVSHSSSPEWKEGFTWAF--DSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVV 2069 (2102)
T ss_pred CCCCeEEEEECC-----CCcccccccCCCCCCCcccceeeee--cCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHh
Confidence 355577765432 2244677766667799999999854 4557788899999997643333 899999998653
Q ss_pred Cccccccceee
Q 003651 131 KMQLKTGKQKL 141 (805)
Q Consensus 131 ~~~Lr~G~~~L 141 (805)
.+.=.+|.+.|
T Consensus 2070 ~~~~~~~~~~L 2080 (2102)
T PLN03200 2070 MEGTYSGEYSL 2080 (2102)
T ss_pred cCceeeeeeec
Confidence 23334455544
No 187
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=51.91 E-value=1.2e+02 Score=31.25 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred ccceEEEecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--hcc--CCCCCCceeEccCCC
Q 003651 600 TPYNVLATGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYI--LGI--GDRHLDNLLLRDDGR 675 (805)
Q Consensus 600 ~~Y~Vl~t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYi--LGI--gDRH~dNImi~~~G~ 675 (805)
..|.+.......-+.|.++..++.+.........+ .....-.++..+ ...+.|+ .|+ ||-+++|||++++|.
T Consensus 65 ~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~--~~~~~~~~~~~l--~~al~~lH~~~i~H~dl~~~Nill~~~~~ 140 (260)
T cd05069 65 PLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYL--KLPQLVDMAAQI--ADGMAYIERMNYIHRDLRAANILVGDNLV 140 (260)
T ss_pred eEEEEEcCCCcEEEEEcCCCCCHHHHHhhCCCCCC--CHHHHHHHHHHH--HHHHHHHHhCCEeecccCcceEEEcCCCe
Confidence 34455544444455566666667663221111111 122222232222 2223344 233 799999999999999
Q ss_pred EEEEEeccc
Q 003651 676 LFHVDFGYI 684 (805)
Q Consensus 676 lfHIDFG~i 684 (805)
+.=+|||..
T Consensus 141 ~~l~dfg~~ 149 (260)
T cd05069 141 CKIADFGLA 149 (260)
T ss_pred EEECCCccc
Confidence 999999976
No 188
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=51.85 E-value=1.3e+02 Score=32.57 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+|-.++||||+++|.+.=+|||..
T Consensus 120 rDlkp~Nili~~~~~~kl~DfG~a 143 (325)
T cd05602 120 RDLKPENILLDSQGHIVLTDFGLC 143 (325)
T ss_pred cCCCHHHeEECCCCCEEEccCCCC
Confidence 799999999999999999999975
No 189
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=51.53 E-value=24 Score=24.38 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 003651 372 VRAYAVCILERADDDELQCYLLQLVQALR 400 (805)
Q Consensus 372 VR~yAV~~L~~~~d~~L~~yLlQLVQaLk 400 (805)
||.+|+..|-++.|+ ..++-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~---~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP---RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH---HHHHHHHHHhc
Confidence 899999999999985 45666666664
No 190
>PRK10271 thiK thiamine kinase; Provisional
Probab=50.65 E-value=13 Score=38.33 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=29.1
Q ss_pred HHhhccCCCCCCceeEccCCCEEEEEeccccCCCCC
Q 003651 655 TYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK 690 (805)
Q Consensus 655 tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~ 690 (805)
..++-=||=|++||+++.+| +.=|||++.-..+|.
T Consensus 76 ~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp~ 110 (188)
T PRK10271 76 RLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIA 110 (188)
T ss_pred CeeeecCCCCCccEEEECCC-EEEEeCCcccCCCHH
Confidence 45666799999999998888 889999998766653
No 191
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=50.18 E-value=15 Score=37.15 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=45.2
Q ss_pred eEEEecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCceeEccCCCEEE
Q 003651 603 NVLATGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI----GDRHLDNLLLRDDGRLFH 678 (805)
Q Consensus 603 ~Vl~t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI----gDRH~dNImi~~~G~lfH 678 (805)
.++..+..+-+.|+++..++...... . ........++. .+.++..- ||=|++||+|+++|.+.=
T Consensus 99 ~~~~~~~~~lv~e~~~g~~L~~~~~~------~----~~~~~~~~i~~--~l~~lh~~gi~H~Dl~p~Nill~~~~~~~l 166 (198)
T cd05144 99 KPIDWNRHAVVMEYIDGVELYRVRVL------E----DPEEVLDEILE--EIVKAYKHGIIHGDLSEFNILVDDDEKIYI 166 (198)
T ss_pred ceeecCCceEEEEEeCCcchhhcccc------c----cHHHHHHHHHH--HHHHHHHCCCCcCCCCcccEEEcCCCcEEE
Confidence 44455666778899887666542110 0 11122222222 22333333 488999999999999999
Q ss_pred EEeccccCCC
Q 003651 679 VDFGYILGRD 688 (805)
Q Consensus 679 IDFG~ilg~~ 688 (805)
||||...+.+
T Consensus 167 iDfg~~~~~~ 176 (198)
T cd05144 167 IDWPQMVSTD 176 (198)
T ss_pred EECCccccCC
Confidence 9999886544
No 192
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=48.85 E-value=1.8e+02 Score=31.56 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=+++||||+.+|++.=+|||..
T Consensus 120 ~Dlkp~NIll~~~~~~kL~DfG~~ 143 (325)
T cd05604 120 RDLKPENILLDSQGHVVLTDFGLC 143 (325)
T ss_pred cCCCHHHeEECCCCCEEEeecCCc
Confidence 688899999999999999999975
No 193
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=48.78 E-value=3.4e+02 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCCCCceeEccCCCEEEEEeccccC
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg 686 (805)
||=.++||||+++|.+.=+|||..-+
T Consensus 148 ~dlkp~Nili~~~~~~kl~dfg~~~~ 173 (303)
T cd05088 148 RDLAARNILVGENYVAKIADFGLSRG 173 (303)
T ss_pred cccchheEEecCCCcEEeCccccCcc
Confidence 78889999999999999999997643
No 194
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=48.26 E-value=2.9e+02 Score=28.93 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=.++||+++.+|.+.=+|||..-
T Consensus 156 ~dlkp~Nil~~~~~~~kL~Dfg~~~ 180 (293)
T cd05053 156 RDLAARNVLVTEDHVMKIADFGLAR 180 (293)
T ss_pred cccceeeEEEcCCCeEEeCcccccc
Confidence 5777899999999999999999653
No 195
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=46.78 E-value=1.6e+02 Score=32.52 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|=+++||||+.+|++.-+|||..-
T Consensus 125 rDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 125 RDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred cCCCHHHEEECCCCCEEEeeccCCc
Confidence 7889999999999999999999754
No 196
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=46.15 E-value=1.9e+02 Score=31.24 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|-.++|||++++|++--+|||..-
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCce
Confidence 7888999999999999999999753
No 197
>PRK05231 homoserine kinase; Provisional
Probab=44.50 E-value=47 Score=36.19 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=37.6
Q ss_pred hccCCCCCCceeEccCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcCc
Q 003651 658 LGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSS 732 (805)
Q Consensus 658 LGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~ 732 (805)
+==||=|++|||++.++-..-|||++.--..+. +-|..-+...+...+......+...+..+|...|.=.
T Consensus 189 liHgD~~~~Nil~~~~~~~~iIDf~~~~~~~~~-----~DlA~~~~~~~~~~~~~~~~~~~~~~l~gY~~~~~Ls 258 (319)
T PRK05231 189 VIHADLFRDNVLFEGDRLSGFIDFYFACNDKLL-----YDVAITLNDWCFEADGSLDATKARALLAAYQSVRPLT 258 (319)
T ss_pred cCCCCCCCCcEEEECCceEEEEecccccCCchH-----HHHHHHHHHHHccCCCCcCHHHHHHHHHHHhhcCCCC
Confidence 444899999999995443479999876322211 1121111111111111111356777778887776543
No 198
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=43.46 E-value=16 Score=36.07 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.0
Q ss_pred cCCCCCCceeEccCCCEEEEEeccccC
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~ilg 686 (805)
=||=|++|||++ +|.+.=||||..-.
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECccccc
Confidence 479999999999 99999999998743
No 199
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=43.35 E-value=17 Score=38.22 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=22.5
Q ss_pred cCCCCCCceeEccCCCEEEEEeccc-cC
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYI-LG 686 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~i-lg 686 (805)
=||=|++|||++++| +.=|||++. +|
T Consensus 157 HgD~~~~Nii~~~~~-~~iIDwe~a~~G 183 (226)
T TIGR02172 157 HGDFQIGNLITSGKG-TYWIDLGDFGYG 183 (226)
T ss_pred ecCCCCCcEEEcCCC-cEEEechhcCcC
Confidence 588899999999988 889999876 44
No 200
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.22 E-value=41 Score=43.20 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCC-------CCCCCCccccHHHHHHhCCC
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMGGA 709 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p-------~pf~~PFrLT~~mv~~mGg~ 709 (805)
.|=-||||||+..||+=-.|||-.+-.+. .+.+.|==++||+..+||+-
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 57789999999999999999998864331 23455778999999999865
No 201
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=42.08 E-value=2.5e+02 Score=30.40 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||||+.+|.+--+|||..
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~ 143 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLC 143 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCC
Confidence 688899999999999999999975
No 202
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=41.73 E-value=2.4e+02 Score=32.88 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=+++||||+.+|.+.=+|||..-
T Consensus 193 rDlkp~NIll~~~~~~kL~DFgla~ 217 (478)
T PTZ00267 193 RDLKSANIFLMPTGIIKLGDFGFSK 217 (478)
T ss_pred CCcCHHhEEECCCCcEEEEeCcCce
Confidence 7999999999999999999999753
No 203
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=41.57 E-value=20 Score=38.02 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=38.0
Q ss_pred eeeeccC-CChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEeccc
Q 003651 613 LLEFIPS-RSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 613 lIE~V~~-~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
++|+++. .++.+.... ... ..... ..+|......+=-|| +|=+++|||++.+|++.=||||..
T Consensus 124 V~e~l~G~~~L~~~l~~---~~l--~~~~~----~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~ 189 (239)
T PRK01723 124 LIERIEGARDLVALLQE---APL--SEEQW----QAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRG 189 (239)
T ss_pred EEEecCCCCCHHHHHhc---CCC--CHHHH----HHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCc
Confidence 5677874 677652211 111 12222 233333333334454 599999999999999999999955
No 204
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=41.44 E-value=1.5e+02 Score=32.29 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=.++||||+.+|++.-+|||..-
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCc
Confidence 6888999999999999999999764
No 205
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=41.41 E-value=46 Score=34.21 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhCCCCceeccceEEEecCC-C-------ceeeecc-CCChhhhcCCCCCCCCCChHHHHHHHHHHH
Q 003651 578 LVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD-E-------GLLEFIP-SRSLAQKFHPDEHGPFGITATCLETFIKSC 648 (805)
Q Consensus 578 lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~-~-------GlIE~V~-~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~ 648 (805)
++.+=++.+..+.+ .| +.+..+++.+.. . =+.|.++ ..++.+....... ......+.+++.+
T Consensus 57 ra~~E~~~~~~L~~-~G----i~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~----~~~~~~~~ll~~l 127 (206)
T PF06293_consen 57 RAKREWRNLQRLRE-AG----IPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ----LDPSQRRELLRAL 127 (206)
T ss_pred HHHHHHHHHHHHHH-cC----CCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc----cchhhHHHHHHHH
Confidence 44555555555443 34 445555555443 1 1457777 4567662111000 1133567888888
Q ss_pred HHHHHHHHhhcc--CCCCCCceeEccCC---CEEEEEeccc
Q 003651 649 AGYSVITYILGI--GDRHLDNLLLRDDG---RLFHVDFGYI 684 (805)
Q Consensus 649 Agysv~tYiLGI--gDRH~dNImi~~~G---~lfHIDFG~i 684 (805)
|.+-.--+--|| ||=|..|||++.++ +++=|||+-.
T Consensus 128 ~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~ 168 (206)
T PF06293_consen 128 ARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRM 168 (206)
T ss_pred HHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhc
Confidence 888887788887 89999999999887 9999999754
No 206
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=41.36 E-value=4.7e+02 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred cCCCCCCceeEccCCCEEEEEeccccC
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~ilg 686 (805)
-||-+++||||+.+|.+.=+|||....
T Consensus 126 H~dlkp~Nili~~~~~~~l~dfg~~~~ 152 (316)
T cd05574 126 YRDLKPENILLHESGHIMLSDFDLSKQ 152 (316)
T ss_pred ccCCChHHeEEcCCCCEEEeecchhhc
Confidence 489999999999999999999997654
No 207
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=41.25 E-value=2.3e+02 Score=30.69 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+|=.++||||+.+|++.=+|||..
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~a 143 (330)
T cd05586 120 RDLKPENILLDATGHIALCDFGLS 143 (330)
T ss_pred ccCCHHHeEECCCCCEEEecCCcC
Confidence 788999999999999999999975
No 208
>PRK12274 serine/threonine protein kinase; Provisional
Probab=40.72 E-value=22 Score=37.56 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=25.6
Q ss_pred HHhhcc--CCC-CCCceeEccCCCEEEEEecccc
Q 003651 655 TYILGI--GDR-HLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 655 tYiLGI--gDR-H~dNImi~~~G~lfHIDFG~il 685 (805)
.+=.|| +|= .++|||++.+|++.=||||...
T Consensus 107 lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~ 140 (218)
T PRK12274 107 LHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAV 140 (218)
T ss_pred HHHCcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence 344567 788 5799999999999999999874
No 209
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=40.69 E-value=2.7e+02 Score=29.22 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|=.++||||+.+|.+.=+|||...
T Consensus 121 ~dlkp~Nili~~~~~~~l~dfg~~~ 145 (280)
T cd05608 121 RDLKPENVLLDNDGNVRISDLGLAV 145 (280)
T ss_pred CCCCHHHEEECCCCCEEEeeCccce
Confidence 6777889999999999999999753
No 210
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=40.32 E-value=4.2e+02 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||-+++||+++.+|.+.=+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~l~d~~~~ 153 (267)
T cd08224 130 RDIKPANVFITATGVVKLGDLGLG 153 (267)
T ss_pred CCcChhhEEECCCCcEEEecccee
Confidence 899999999999999999999965
No 211
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=40.14 E-value=67 Score=34.96 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.0
Q ss_pred HhhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 656 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 656 YiLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+.+==||=|.+||+++.+|...-|||++.
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 44445899999999999887789999876
No 212
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=39.52 E-value=2.5e+02 Score=31.36 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=45.7
Q ss_pred eeccceEEEecCC-CceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCC
Q 003651 598 HLTPYNVLATGQD-EGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG 674 (805)
Q Consensus 598 ~l~~Y~Vl~t~~~-~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G 674 (805)
-+..|.+.-.... .=+.|+++..++.+..... +. ........++..++.---.-+-.|| +|=.++||||+.+|
T Consensus 63 iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~--~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~ 138 (381)
T cd05626 63 VVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--EV--FPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDG 138 (381)
T ss_pred eeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc--CC--CCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCC
Confidence 3444444443332 2245677665665521111 11 1233344455444332222233455 78889999999999
Q ss_pred CEEEEEeccc
Q 003651 675 RLFHVDFGYI 684 (805)
Q Consensus 675 ~lfHIDFG~i 684 (805)
++.=+|||..
T Consensus 139 ~~kL~DFGl~ 148 (381)
T cd05626 139 HIKLTDFGLC 148 (381)
T ss_pred CEEEeeCcCC
Confidence 9999999964
No 213
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=39.10 E-value=4e+02 Score=27.04 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||-+++|||++.+|.+.=+|||...
T Consensus 117 ~dl~p~nili~~~~~~~l~d~g~~~ 141 (250)
T cd05085 117 RDLAARNCLVGENNVLKISDFGMSR 141 (250)
T ss_pred cccChheEEEcCCCeEEECCCccce
Confidence 7999999999999999999999653
No 214
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=38.85 E-value=4.6e+02 Score=27.06 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=24.8
Q ss_pred hhcc--CCCCCCceeEccCCCEEEEEecccc
Q 003651 657 ILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 657 iLGI--gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
=.|| ||=+++||+++.+|.+.-+|||...
T Consensus 118 ~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~ 148 (269)
T cd05042 118 QADFIHSDLALRNCQLTADLSVKIGDYGLAL 148 (269)
T ss_pred hcCEecccccHhheEecCCCcEEEecccccc
Confidence 3455 7889999999999999999999754
No 215
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=38.63 E-value=55 Score=34.36 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||-.++|||++++|.+.-+|||...
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~ 172 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSA 172 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCcee
Confidence 7888999999999999999999764
No 216
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=38.60 E-value=55 Score=35.14 Aligned_cols=29 Identities=24% Similarity=0.152 Sum_probs=23.5
Q ss_pred HhhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 656 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 656 YiLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+.+==||-|++|||++++|-.--|||++.
T Consensus 175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a 203 (296)
T cd05153 175 RGVIHADLFRDNVLFDGDELSGVIDFYFA 203 (296)
T ss_pred CcCCccCcCcccEEEeCCceEEEeehhhh
Confidence 33445999999999998776679999876
No 217
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=38.15 E-value=2.5e+02 Score=31.02 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+|=.++||||+.+|++.=+|||..
T Consensus 125 rDlKp~NILi~~~~~vkL~DFGla 148 (363)
T cd05628 125 RDIKPDNLLLDSKGHVKLSDFGLC 148 (363)
T ss_pred cCCCHHHeEECCCCCEEEeeccCc
Confidence 788999999999999999999975
No 218
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=38.11 E-value=2.9e+02 Score=29.98 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=44.6
Q ss_pred ccceEEEecCC-CceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCE
Q 003651 600 TPYNVLATGQD-EGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRL 676 (805)
Q Consensus 600 ~~Y~Vl~t~~~-~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~l 676 (805)
..|.+...... .=+.|+++..++....... +.+ .......++..++--.-.-+=.|| ||=+++||||+.+|.+
T Consensus 60 ~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~--~~l--~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~ 135 (329)
T cd05588 60 GLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ--RKL--PEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHI 135 (329)
T ss_pred ceEEEEEcCCEEEEEEeCCCCCCHHHHHHHc--CCC--CHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCE
Confidence 33444443332 2344666655554411111 111 233334444444432222233454 7889999999999999
Q ss_pred EEEEecccc
Q 003651 677 FHVDFGYIL 685 (805)
Q Consensus 677 fHIDFG~il 685 (805)
-=+|||..-
T Consensus 136 kL~Dfg~~~ 144 (329)
T cd05588 136 KLTDYGMCK 144 (329)
T ss_pred EECcCcccc
Confidence 999999753
No 219
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=37.63 E-value=2.5e+02 Score=28.86 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=46.7
Q ss_pred eccceEEEecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--hc--cCCCCCCceeEccCC
Q 003651 599 LTPYNVLATGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYI--LG--IGDRHLDNLLLRDDG 674 (805)
Q Consensus 599 l~~Y~Vl~t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYi--LG--IgDRH~dNImi~~~G 674 (805)
+..|.+..-+...-++|+++..++.+.......... .......++..++ ..+.|+ .| -||=+++|||++++|
T Consensus 64 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~--~~~~~~~~~~~l~--~al~~lH~~~i~H~di~p~Nili~~~~ 139 (260)
T cd05070 64 VQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRAL--KLPNLVDMAAQVA--AGMAYIERMNYIHRDLRSANILVGDGL 139 (260)
T ss_pred EEEEeEECCCCcEEEEEecCCCcHHHHHHhcCCCCC--CHHHHHHHHHHHH--HHHHHHHHCCcccCCCccceEEEeCCc
Confidence 445555544555666777776677663221111112 1222333333322 122333 22 378899999999999
Q ss_pred CEEEEEecccc
Q 003651 675 RLFHVDFGYIL 685 (805)
Q Consensus 675 ~lfHIDFG~il 685 (805)
.+.=+|||..-
T Consensus 140 ~~~l~dfg~~~ 150 (260)
T cd05070 140 VCKIADFGLAR 150 (260)
T ss_pred eEEeCCceeee
Confidence 99999999763
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=37.45 E-value=55 Score=33.15 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=47.7
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHHhcCC--chHHHHHHHH---HHHHhhccc---ccchhHHHHHHHHhhc--Ccchhh
Q 003651 356 VCDALELLSPVFESEEVRAYAVCILERAD--DDELQCYLLQ---LVQALRFER---SDKSRLSQFLVQRSSH--NIELAS 425 (805)
Q Consensus 356 ~~~aLeLL~~~f~~~~VR~yAV~~L~~~~--d~~L~~yLlQ---LVQaLkyE~---~~~s~L~~fLi~ra~~--n~~i~~ 425 (805)
..-|..||+-.=.+|.+++.|++.|+.+. .+++...|++ .++||||=. ..++.-++-+++-|.+ |+.+=+
T Consensus 61 k~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~ 140 (167)
T PF07035_consen 61 KPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFY 140 (167)
T ss_pred HHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHH
Confidence 34455555555567999999999998866 4556555654 899999852 2344455656666644 234444
Q ss_pred HHhhhh
Q 003651 426 FLRWYV 431 (805)
Q Consensus 426 ~l~W~L 431 (805)
..||++
T Consensus 141 ~V~~ff 146 (167)
T PF07035_consen 141 AVFRFF 146 (167)
T ss_pred HHHHHH
Confidence 444444
No 221
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=37.33 E-value=17 Score=36.60 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHhhccCCCCCCceeEc-cCCCEEEEEeccc
Q 003651 655 TYILGIGDRHLDNLLLR-DDGRLFHVDFGYI 684 (805)
Q Consensus 655 tYiLGIgDRH~dNImi~-~~G~lfHIDFG~i 684 (805)
...+-=||=|++|||++ ++|++--|||+..
T Consensus 165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CcEEEEeccccccceeeeccceeEEEecccc
Confidence 45566799999999999 6777778999876
No 222
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=37.29 E-value=3e+02 Score=28.83 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=24.7
Q ss_pred hcc--CCCCCCceeEccCCCEEEEEecccc
Q 003651 658 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 658 LGI--gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
.|+ ||-+++||+++.+|++.=+|||+..
T Consensus 135 ~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~ 164 (286)
T cd06614 135 QNVIHRDIKSDNILLSKDGSVKLADFGFAA 164 (286)
T ss_pred CCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence 555 8999999999999999999999764
No 223
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=37.11 E-value=17 Score=40.90 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=26.4
Q ss_pred HHHHHhhcc----CCCCCCceeEccCCCEEEEEeccc
Q 003651 652 SVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 652 sv~tYiLGI----gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
|.+.|+=.. +|--++|||++.+||+.-.|||..
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~ 172 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLC 172 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccc
Confidence 445555333 588899999999999999999966
No 224
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=36.77 E-value=31 Score=37.30 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.4
Q ss_pred HHHhhccCCCCCCceeEccC----CCEEEEEeccccCCC
Q 003651 654 ITYILGIGDRHLDNLLLRDD----GRLFHVDFGYILGRD 688 (805)
Q Consensus 654 ~tYiLGIgDRH~dNImi~~~----G~lfHIDFG~ilg~~ 688 (805)
...+|==||=|.+|||++++ |.+.-|||.+.--.+
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~ 215 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNY 215 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCC
Confidence 45567779999999999975 999999998874333
No 225
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=36.65 E-value=2.4e+02 Score=28.87 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.4
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
-||-+++||||+.+|.+.=+|||...
T Consensus 126 h~di~p~nili~~~~~~~l~d~g~~~ 151 (261)
T cd05034 126 HRDLAARNILVGENLVCKIADFGLAR 151 (261)
T ss_pred cCCcchheEEEcCCCCEEECccccce
Confidence 48999999999999999999999764
No 226
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.73 E-value=51 Score=30.77 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=50.1
Q ss_pred hHhhhccchhHhhhhccccCCCHHHHHHHHHHhccc--------CCCChhhhhhcCCCCCC-------C---HHHHHHHH
Q 003651 316 RFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRW--------EMIDVCDALELLSPVFE-------S---EEVRAYAV 377 (805)
Q Consensus 316 R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W--------~~i~~~~aLeLL~~~f~-------~---~~VR~yAV 377 (805)
+-|+..+|..+..||+.-||.+.+++.+.+.--.+| ..=-...||+||..--. + ..+...+|
T Consensus 7 k~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv 86 (108)
T PF10366_consen 7 KCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIV 86 (108)
T ss_pred HHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHH
Confidence 445666899999999988999999998865422233 44557889998763222 1 23555677
Q ss_pred HHHhcCCchHHH
Q 003651 378 CILERADDDELQ 389 (805)
Q Consensus 378 ~~L~~~~d~~L~ 389 (805)
+-|++++.+++-
T Consensus 87 ~yL~~L~~~~~d 98 (108)
T PF10366_consen 87 QYLQKLGNEDLD 98 (108)
T ss_pred HHHHhCChhhhH
Confidence 788777665543
No 227
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=35.22 E-value=4.1e+02 Score=28.81 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|=.++|||++.+|++.-+|||...
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~ 144 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCK 144 (327)
T ss_pred cCCCHHHEEEeCCCCEEEeccccce
Confidence 7888999999999999999999764
No 228
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=35.20 E-value=28 Score=34.97 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=23.4
Q ss_pred HhhccCCCCCCceeEcc--CCCEEEEEeccc
Q 003651 656 YILGIGDRHLDNLLLRD--DGRLFHVDFGYI 684 (805)
Q Consensus 656 YiLGIgDRH~dNImi~~--~G~lfHIDFG~i 684 (805)
+.+==||=|++|||++. +|.+.=|||+..
T Consensus 174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred cEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 45556999999999997 566677999866
No 229
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=35.20 E-value=3.8e+02 Score=28.27 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|=.++||+++++|.+.=+|||...
T Consensus 126 ~dikp~Nil~~~~~~~~l~Dfg~~~ 150 (285)
T cd05630 126 RDLKPENILLDDHGHIRISDLGLAV 150 (285)
T ss_pred CCCCHHHEEECCCCCEEEeecccee
Confidence 6888999999999999999999764
No 230
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=34.27 E-value=4.2e+02 Score=28.12 Aligned_cols=44 Identities=32% Similarity=0.460 Sum_probs=32.0
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCCC------CCCCCccccHHHHH
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK------PFPPPMKLCKEMVE 704 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p~------pf~~PFrLT~~mv~ 704 (805)
||-+++|||++.+|.+.=+|||......+. ....|.-+.+|+..
T Consensus 139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 188 (297)
T cd06656 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 188 (297)
T ss_pred CCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHc
Confidence 899999999999999999999976432211 12345556777764
No 231
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=34.23 E-value=93 Score=32.91 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceeEc--cCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCCccchhhHHHHH
Q 003651 644 FIKSCAGYSVITYILGIGDRHLDNLLLR--DDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYC 721 (805)
Q Consensus 644 F~~S~Agysv~tYiLGIgDRH~dNImi~--~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c 721 (805)
-.--+.-.+|+=|+.|=+|||--|+.=. ..|-++|+|=|--||+....+..= | -+ -.+--.|+..-
T Consensus 88 rLldliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sI--l--------aP--L~QcC~iRrST 155 (221)
T PF06702_consen 88 RLLDLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSI--L--------AP--LYQCCRIRRST 155 (221)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccch--h--------cc--HHHhhhccccH
Confidence 3445667889999999999999885421 367799999999899875543110 1 11 01124566666
Q ss_pred HHHHHHHHcCchHHHHHHHHH-ccCCCCCCcCCchhHHHHHHHHcC
Q 003651 722 CEAYNILRKSSNLILNLFHLM-AGSNIPDIASDPEKGILKLQEKFR 766 (805)
Q Consensus 722 ~~a~~~LRk~~~~il~l~~lm-~~~~ip~~~~~~~~~i~~l~~~~~ 766 (805)
...+..|++....+-.++.-. ..+.+.-+-.+ ..+..+.+|+.
T Consensus 156 ~~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL~e--~Hl~AldrRL~ 199 (221)
T PF06702_consen 156 WERLQLLSKGGYRLSDLMRESLSRDPLAPVLTE--PHLEALDRRLD 199 (221)
T ss_pred HHHHHHhccCCCcHHHHHHHHhccCccCccCcH--HHHHHHHHHHH
Confidence 677777775555555554433 33333333322 24556666654
No 232
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=33.45 E-value=33 Score=36.44 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=63.1
Q ss_pred eecccccceEEEEEEecCCCeeeEEEEeC--CCcchHHHHHHHH------HHHHHHHh--hCCCCceeccceEEE-----
Q 003651 542 SIFKSALHPLRLTFRTASGGTCKMIFKKG--DDIRQDQLVVQMV------SLMDRLLK--LENLDLHLTPYNVLA----- 606 (805)
Q Consensus 542 ~v~~S~~~P~~l~f~~~dg~~~~~i~K~g--DDLRqD~lvlQli------~lmd~ll~--~~~ldl~l~~Y~Vl~----- 606 (805)
+|+++..+- .+.....||+. +|+|.- .+-|.....+-++ +++.++.+ ++|+.-..-+|-+.-
T Consensus 37 kv~k~~~r~-~ValIei~~~k--yIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~ 113 (229)
T PF06176_consen 37 KVFKNTKRN-YVALIEIDGKK--YILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFR 113 (229)
T ss_pred EeecCCCcc-EEEEEEECCcE--EEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeecc
Confidence 445554322 23333446644 577763 5566665555442 34444332 345544333343321
Q ss_pred -ecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 607 -TGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 607 -t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+....=++|+|+...+.+... +.+...+..+.++. -+-..=+==||=|++|++++++| +.=|||+..
T Consensus 114 ~~~~~~ll~EYIeG~~l~d~~~--------i~e~~~~ki~~~ik--qlH~~G~~HGD~hpgNFlv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 114 YTSSYVLLMEYIEGVELNDIED--------IDEDLAEKIVEAIK--QLHKHGFYHGDPHPGNFLVSNNG-IRIIDTQGK 181 (229)
T ss_pred ceeEEEEEEEEecCeecccchh--------cCHHHHHHHHHHHH--HHHHcCCccCCCCcCcEEEECCc-EEEEECccc
Confidence 111123788888765544110 00111122222211 11112223499999999999655 999999654
No 233
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=33.27 E-value=4.8e+02 Score=26.61 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=40.8
Q ss_pred ceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEeccccC
Q 003651 612 GLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 612 GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~ilg 686 (805)
-+.|+.+..++.+......... ........++..++.-...-+=-|+ ||-+++||+++.+|.+.=+|||..-.
T Consensus 77 ~v~e~~~~~~L~~~~~~~~~~~--~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~ 151 (256)
T cd05039 77 IVTEYMAKGSLVDYLRSRGRAV--ITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE 151 (256)
T ss_pred EEEEecCCCcHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccc
Confidence 3456666556665221111111 1233344444444322222223343 78899999999999999999997643
No 234
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=33.13 E-value=59 Score=36.12 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=39.7
Q ss_pred eeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEeccc
Q 003651 613 LLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 613 lIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+.|+++..++.+..... +. ........++..++.---.-+=.|| ||-.++||||+.+|++.-+|||..
T Consensus 79 v~E~~~~g~L~~~i~~~--~~--~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 79 VMDYIPGGDMMSLLIRL--GI--FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred EEeCCCCCcHHHHHHhc--CC--CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence 45677665665522111 11 1233344444444322111223444 799999999999999999999975
No 235
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.88 E-value=37 Score=29.13 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcc
Q 003651 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALRFE 402 (805)
Q Consensus 368 ~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLkyE 402 (805)
.|+.||..|+..|..+.+++ .+++|+++++-+
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 56778888888887776554 555666666544
No 236
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=32.60 E-value=4.7e+02 Score=28.18 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=24.0
Q ss_pred hcc--CCCCCCceeEccCCCEEEEEeccc
Q 003651 658 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 658 LGI--gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
.|| +|=.++||||+.+|.+.=+|||..
T Consensus 115 ~~ivHrDikp~NIll~~~~~~kL~Dfg~~ 143 (325)
T cd05594 115 KNVVYRDLKLENLMLDKDGHIKITDFGLC 143 (325)
T ss_pred CCEEecCCCCCeEEECCCCCEEEecCCCC
Confidence 355 899999999999999999999964
No 237
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=32.37 E-value=30 Score=41.51 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.3
Q ss_pred cCCCCCCceeEc-cCCCEEEEEeccccCCC
Q 003651 660 IGDRHLDNLLLR-DDGRLFHVDFGYILGRD 688 (805)
Q Consensus 660 IgDRH~dNImi~-~~G~lfHIDFG~ilg~~ 688 (805)
.+|-|++|||++ ..|++-=+|||+-=+..
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~~ 467 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSELE 467 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhCc
Confidence 589999999995 89999999999985543
No 238
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=32.23 E-value=5.2e+02 Score=26.85 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.7
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
-||=+++||+++.+|.+.=+|||...
T Consensus 118 H~di~p~Nil~~~~~~~~l~dfg~~~ 143 (277)
T cd05577 118 YRDLKPENVLLDDHGNVRISDLGLAV 143 (277)
T ss_pred cCCCCHHHEEECCCCCEEEccCcchh
Confidence 37888899999999999999999653
No 239
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=31.99 E-value=1.5e+02 Score=35.85 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=70.0
Q ss_pred EEEeC-CCcchHHHHHHHHHHHHHHHhhCCCCceeccceEEEecCCCceeeeccCCChhh--hcCCCCCCCCCChHHHHH
Q 003651 566 IFKKG-DDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQ--KFHPDEHGPFGITATCLE 642 (805)
Q Consensus 566 i~K~g-DDLRqD~lvlQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~~~tl~~--~~~~~~~~~~~~~~~~~~ 642 (805)
|+|+. +=.||-+--+-++..|++ ...++-.-.++-|.+.-.-....|+-=.-+..|.+ +.+ ..-|+.-....
T Consensus 218 IiKN~k~f~~Q~~~Ei~iL~~ln~-~d~~~~~n~Vrm~d~F~fr~HlciVfELL~~NLYellK~n----~f~Glsl~~ir 292 (586)
T KOG0667|consen 218 IIKNKKRFLRQAQIEIRILELLNK-HDPDDKYNIVRMLDYFYFRNHLCIVFELLSTNLYELLKNN----KFRGLSLPLVR 292 (586)
T ss_pred eeccChHHHHHHHHHHHHHHHHhc-cCCCCCeeEEEeeeccccccceeeeehhhhhhHHHHHHhc----CCCCCCHHHHH
Confidence 55553 566777777777777776 33333333344444444433333332222333444 222 22345566789
Q ss_pred HHHHHHHHHHHHHHhhcc--CCCCCCceeEcc--CCCEEEEEecc
Q 003651 643 TFIKSCAGYSVITYILGI--GDRHLDNLLLRD--DGRLFHVDFGY 683 (805)
Q Consensus 643 ~F~~S~Agysv~tYiLGI--gDRH~dNImi~~--~G~lfHIDFG~ 683 (805)
.|+.++.--=+.=.-+|| +|--++||||.. .-.+==||||.
T Consensus 293 ~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGS 337 (586)
T KOG0667|consen 293 KFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGS 337 (586)
T ss_pred HHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccc
Confidence 999999887777778888 799999999984 45788899994
No 240
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=31.41 E-value=4.1e+02 Score=28.73 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=22.2
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||||+.+|.+.=+|||..
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a 142 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLC 142 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCC
Confidence 788999999999999999999965
No 241
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=31.39 E-value=5.9e+02 Score=26.13 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCC------CCCCCCCccccHHHHH
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRD------PKPFPPPMKLCKEMVE 704 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~------p~pf~~PFrLT~~mv~ 704 (805)
+|=+++||+++++|.+.-+|||...... ......+.=+.+|++.
T Consensus 135 ~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~ 184 (272)
T cd06637 135 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA 184 (272)
T ss_pred CCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhc
Confidence 6889999999999999999999764221 1111234446677764
No 242
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=31.08 E-value=4.2e+02 Score=29.39 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred eccceEEEecC-CCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCC
Q 003651 599 LTPYNVLATGQ-DEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGR 675 (805)
Q Consensus 599 l~~Y~Vl~t~~-~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~ 675 (805)
+..|.+...+. -.=+.|+++.-++.+..... +. ..+.....++..++.---..+-.|| +|=.++||||+.+|+
T Consensus 64 v~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~--~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~ 139 (382)
T cd05625 64 VRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--GI--FPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGH 139 (382)
T ss_pred CeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CC--CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC
Confidence 33444443332 23345677655555421111 11 1233444455444322112223444 788999999999999
Q ss_pred EEEEEeccc
Q 003651 676 LFHVDFGYI 684 (805)
Q Consensus 676 lfHIDFG~i 684 (805)
+.=+|||..
T Consensus 140 ~kL~DFGla 148 (382)
T cd05625 140 IKLTDFGLC 148 (382)
T ss_pred EEEeECCCC
Confidence 999999974
No 243
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=30.93 E-value=5.5e+02 Score=26.83 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.3
Q ss_pred hcc--CCCCCCceeEccCCCEEEEEecccc
Q 003651 658 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 658 LGI--gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
.|| ||=.++||+++.+|.+.=+|||...
T Consensus 114 ~~ivH~dikp~Nili~~~~~~~l~Dfg~~~ 143 (277)
T cd05607 114 MDIVYRDMKPENVLLDDQGNCRLSDLGLAV 143 (277)
T ss_pred CCEEEccCChHhEEEcCCCCEEEeeceeee
Confidence 455 7889999999999999999999754
No 244
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=30.74 E-value=1.9e+02 Score=30.83 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCCC--CCCCCccccHHHHH
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVE 704 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~ 704 (805)
||-+++||+++++|.+.=+|||......+. ....+.-+.+|++.
T Consensus 139 ~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~ 184 (307)
T cd06607 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVIL 184 (307)
T ss_pred cCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeee
Confidence 789999999999999999999976432222 12234446667653
No 245
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=30.67 E-value=64 Score=35.61 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
+|-.++|||++.+|++.-+|||..-
T Consensus 155 rDLkp~NILl~~~~~ikL~DFG~a~ 179 (340)
T PTZ00426 155 RDLKPENLLLDKDGFIKMTDFGFAK 179 (340)
T ss_pred cCCCHHHEEECCCCCEEEecCCCCe
Confidence 7888999999999999999999763
No 246
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=30.52 E-value=6.1e+02 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
=||=+++||+|+.+|.+.-+|||...
T Consensus 129 H~di~p~nili~~~~~~~l~dfg~~~ 154 (266)
T cd05033 129 HRDLAARNILVNSNLVCKVSDFGLSR 154 (266)
T ss_pred cCCCCcceEEEcCCCCEEECccchhh
Confidence 36889999999999999999999764
No 247
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=30.38 E-value=44 Score=30.60 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=|++|||++++|.+.=+|||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999998763
No 248
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=30.34 E-value=2.7e+02 Score=29.88 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCCC--CCCCCccccHHHHHH
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEA 705 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~~ 705 (805)
||-+++||+++.+|++.=+|||......+. ....+.=+.+|++..
T Consensus 149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~ 195 (317)
T cd06635 149 RDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILA 195 (317)
T ss_pred CCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhc
Confidence 788999999999999999999975432221 112233456777644
No 249
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=30.08 E-value=6e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.7
Q ss_pred cCCCCCCceeEccCCCEEEEEeccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
=||-+++|||++.+|.+.=+|||..
T Consensus 125 H~di~p~nil~~~~~~~~l~df~~~ 149 (257)
T cd08223 125 HRDLKTQNVFLTRTNIIKVGDLGIA 149 (257)
T ss_pred ccCCCchhEEEecCCcEEEecccce
Confidence 3799999999999999999999964
No 250
>smart00090 RIO RIO-like kinase.
Probab=29.75 E-value=34 Score=36.13 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=46.5
Q ss_pred eccceEEEecCCCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhc-c--CCCCCCceeEccCCC
Q 003651 599 LTPYNVLATGQDEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG-I--GDRHLDNLLLRDDGR 675 (805)
Q Consensus 599 l~~Y~Vl~t~~~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLG-I--gDRH~dNImi~~~G~ 675 (805)
+..++++..+...=+.|+++..++....... .. ...+....+...++...---+--| | ||=|++|||++ +|+
T Consensus 112 i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~--~~--~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~ 186 (237)
T smart00090 112 VPVPKPIAWRRNVLVMEFIGGDGLPAPRLKD--VE--PEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGK 186 (237)
T ss_pred CCCCeeeEecCceEEEEEecCCccccccccc--CC--cchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCC
Confidence 3344555445555566777765544311111 11 112233455555553322223344 4 79999999999 899
Q ss_pred EEEEEecccc
Q 003651 676 LFHVDFGYIL 685 (805)
Q Consensus 676 lfHIDFG~il 685 (805)
+.=||||..-
T Consensus 187 i~LiDFg~a~ 196 (237)
T smart00090 187 VVIIDVSQSV 196 (237)
T ss_pred EEEEEChhhh
Confidence 9999999753
No 251
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=29.47 E-value=2e+02 Score=34.28 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=23.2
Q ss_pred CCCCCceeEccCCCEEEEEeccccCCC
Q 003651 662 DRHLDNLLLRDDGRLFHVDFGYILGRD 688 (805)
Q Consensus 662 DRH~dNImi~~~G~lfHIDFG~ilg~~ 688 (805)
|=-+||+||+.+||+=-.|||..-|-.
T Consensus 266 DIKPdNlLiD~~GHiKLSDFGLs~gl~ 292 (550)
T KOG0605|consen 266 DIKPDNLLIDAKGHIKLSDFGLSTGLD 292 (550)
T ss_pred cCChhheeecCCCCEeeccccccchhh
Confidence 556899999999999999999886533
No 252
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=29.06 E-value=2.1e+02 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=21.7
Q ss_pred hccCCCCCCceeEccCCCEEEEEecccc
Q 003651 658 LGIGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 658 LGIgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
|=-||=|.+|||+++++ .+=|||.+.+
T Consensus 194 llHGDl~~gNi~~~~~~-~~~iD~e~~~ 220 (370)
T TIGR01767 194 LLHGDLHSGSIFVSEHE-TKVIDPEFAF 220 (370)
T ss_pred eeeccCCcccEEEcCCC-CEEEcCcccc
Confidence 45699999999998765 7799997543
No 253
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=28.59 E-value=45 Score=36.17 Aligned_cols=34 Identities=38% Similarity=0.544 Sum_probs=28.8
Q ss_pred HhhccCCCCCCceeEccCCCEEEEEeccccCCCC
Q 003651 656 YILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 689 (805)
Q Consensus 656 YiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p 689 (805)
+++.=||=|++|++.++.|.++=|||-+.--.+|
T Consensus 153 ~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 153 LVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeeecCCCCccceEEcCCCcEEEEecccCCCccH
Confidence 4566689999999999999999999988755553
No 254
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=28.46 E-value=43 Score=34.87 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=24.0
Q ss_pred HHhhccCCCCCCceeEccCCCEEEEEeccc-cC
Q 003651 655 TYILGIGDRHLDNLLLRDDGRLFHVDFGYI-LG 686 (805)
Q Consensus 655 tYiLGIgDRH~dNImi~~~G~lfHIDFG~i-lg 686 (805)
.+.|==||=|.+|||++..+-.--|||+.. .|
T Consensus 163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~g 195 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVG 195 (235)
T ss_pred CceEEeCCCCCCcEEEECCCEEEEEeCcccCcC
Confidence 455667999999999986443458999976 44
No 255
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=28.07 E-value=7.1e+02 Score=26.89 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||-.++|||++.+|.+.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5777999999999999999999753
No 256
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=28.05 E-value=5.7e+02 Score=26.17 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.3
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
-||-+++||+++++|.+.=+|||+.-
T Consensus 125 H~dl~p~nil~~~~~~~~l~dfg~~~ 150 (265)
T cd06631 125 HRDIKGNNVMLMPNGIIKLIDFGCAR 150 (265)
T ss_pred cCCcCHHhEEECCCCeEEeccchhhH
Confidence 48999999999999999999999753
No 257
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=27.97 E-value=6.8e+02 Score=27.15 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||||+.+|++-=+|||..
T Consensus 120 ~Dikp~Nili~~~~~~kL~DfG~~ 143 (329)
T cd05618 120 RDLKLDNVLLDSEGHIKLTDYGMC 143 (329)
T ss_pred CCCCHHHEEECCCCCEEEeeCCcc
Confidence 788999999999999999999965
No 258
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=27.29 E-value=6.8e+02 Score=25.50 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||-+++||+++.+|++.-+|||...
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCccce
Confidence 8999999999999999999999763
No 259
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=27.26 E-value=2.7e+02 Score=29.82 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCCC--CCCCCccccHHHHHHh
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEAM 706 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~~m 706 (805)
||=+++||+++.+|.+.=+|||....-.+. ....+.-+.+|.+..+
T Consensus 139 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~ 186 (308)
T cd06634 139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAM 186 (308)
T ss_pred CCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhc
Confidence 788899999999999999999965432221 1223444677876543
No 260
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=26.97 E-value=52 Score=33.94 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHhhccCCCCCCceeEcc-CCCEEEEEecccc
Q 003651 655 TYILGIGDRHLDNLLLRD-DGRLFHVDFGYIL 685 (805)
Q Consensus 655 tYiLGIgDRH~dNImi~~-~G~lfHIDFG~il 685 (805)
..+|-=||=|.+|||++. +|.+.=|||-+.-
T Consensus 169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~ 200 (235)
T cd05157 169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG 200 (235)
T ss_pred CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence 356667999999999997 6889999997663
No 261
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=26.83 E-value=5.2e+02 Score=28.03 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+|=.++||||+.+|++-=+|||..
T Consensus 119 rDikp~NIll~~~~~~kL~DfG~~ 142 (328)
T cd05593 119 RDLKLENLMLDKDGHIKITDFGLC 142 (328)
T ss_pred cccCHHHeEECCCCcEEEecCcCC
Confidence 789999999999999999999975
No 262
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=26.69 E-value=4.7e+02 Score=28.37 Aligned_cols=46 Identities=33% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCCCCCceeEccCCCEEEEEecccc--CCCCC-----CCCCCccccHHHHHHh
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL--GRDPK-----PFPPPMKLCKEMVEAM 706 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il--g~~p~-----pf~~PFrLT~~mv~~m 706 (805)
||=.++||||+.+|++-=+|||... ..... ....|.=+.||++..+
T Consensus 126 ~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05597 126 RDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM 178 (331)
T ss_pred CCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence 7888999999999999999999743 21111 1123445678887654
No 263
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=26.35 E-value=30 Score=35.95 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.3
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
-||=+++||+++.+|++..+|||...
T Consensus 125 H~dl~~~ni~i~~~~~~~l~df~~~~ 150 (280)
T cd05581 125 HRDLKPENILLDKDMHIKITDFGTAK 150 (280)
T ss_pred ecCCCHHHeEECCCCCEEecCCcccc
Confidence 37999999999999999999999654
No 264
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=26.19 E-value=42 Score=37.42 Aligned_cols=63 Identities=27% Similarity=0.421 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEeccccCCCCCCCCCCcc-ccHHH
Q 003651 635 GITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMK-LCKEM 702 (805)
Q Consensus 635 ~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf~~PFr-LT~~m 702 (805)
|......+.|++.+-----.++==|| .|-+++||||+++|.+==+|||-.- .+.+|.+ +|+|.
T Consensus 116 g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr-----a~~ip~~~yt~ev 181 (323)
T KOG0594|consen 116 GLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLAR-----AFSIPMRTYTPEV 181 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHH-----HhcCCcccccccE
Confidence 33344566666665332223333333 6889999999999999999999653 2334444 55554
No 265
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=26.12 E-value=1e+02 Score=25.03 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=34.5
Q ss_pred CCCCCCcCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 003651 745 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESV 786 (805)
Q Consensus 745 ~~ip~~~~~~-~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~ 786 (805)
+++|.++... ..+|.++++-..-++|..||+..+.+.|.+.-
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5788888644 45788999988899999999999988888754
No 266
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=26.09 E-value=36 Score=37.00 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=22.3
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=+++|||++.+|.+--+|||..
T Consensus 125 ~dlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05587 125 RDLKLDNVMLDAEGHIKIADFGMC 148 (324)
T ss_pred cCCCHHHeEEcCCCCEEEeecCcc
Confidence 788999999999999999999964
No 267
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.45 E-value=1.1e+02 Score=37.51 Aligned_cols=93 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred cccccCCCCccccccEEecccccCcCccCceEEEEEeecC---------------------------------CCC---c
Q 003651 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC---------------------------------GKD---E 117 (805)
Q Consensus 74 T~~~~f~~~~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~---------------------------------~~~---~ 117 (805)
|+.++-+=+++|+|...|.| -|+..+ ++.+-|||... ++. .
T Consensus 181 tsvk~~TLnPkW~EkF~F~I--eDv~tD-qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTI--EDVQTD-QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred cccccccCCcchhhheeeeh--hccccc-eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Q ss_pred eeEeEEEEEe-----------ec----CCccccccceeeeeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHH
Q 003651 118 RLVGGTTILL-----------FN----SKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKL 175 (805)
Q Consensus 118 ~~vG~~~~~L-----------Fd----~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l 175 (805)
-.+|+.||+| |. .+..=.||..+|++|-.+..++...+ .++..+.+..+|.|
T Consensus 258 DFLGciNipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a~s------e~~~~~~~~hielL 324 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRAGS------EDETLDVKEHIELL 324 (1103)
T ss_pred ccccccccchhcCCcchHHHHhccCcccccccccceEEEEEEEeeeccccccC------ccchhhHHHHHHHH
No 268
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.42 E-value=41 Score=37.57 Aligned_cols=44 Identities=41% Similarity=0.640 Sum_probs=32.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc-----cCCCCCCC-CCCccccHHHHH
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI-----LGRDPKPF-PPPMKLCKEMVE 704 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i-----lg~~p~pf-~~PFrLT~~mv~ 704 (805)
.|-.++|+|++++||+=-.|||.. .|...+.| ..|=-|.||.++
T Consensus 292 RDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVle 341 (516)
T KOG0690|consen 292 RDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLE 341 (516)
T ss_pred eechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhc
Confidence 577899999999999999999976 45555555 344455555543
No 269
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.40 E-value=5.8e+02 Score=31.45 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=52.1
Q ss_pred CCceeccceEEEecCCCc-eeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhh--cc--CCCCCCcee
Q 003651 595 LDLHLTPYNVLATGQDEG-LLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL--GI--GDRHLDNLL 669 (805)
Q Consensus 595 ldl~l~~Y~Vl~t~~~~G-lIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiL--GI--gDRH~dNIm 669 (805)
-..-...|.|..|....- ++|++..-.+....+.+ .| .+++-+|..-|- .+.+-|+= || .|--+||||
T Consensus 428 HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~---~F---~e~rarfyaAev-~l~L~fLH~~~IIYRDlKLdNiL 500 (694)
T KOG0694|consen 428 HPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTD---VF---SEPRARFYAAEV-VLGLQFLHENGIIYRDLKLDNLL 500 (694)
T ss_pred CCeEeecccccccCCeEEEEEEecCCCcEEEEEecc---cc---cHHHHHHHHHHH-HHHHHHHHhcCceeeecchhheE
Confidence 456667788888876544 46888732244332221 12 346666654332 22333432 22 588899999
Q ss_pred EccCCCEEEEEeccc
Q 003651 670 LRDDGRLFHVDFGYI 684 (805)
Q Consensus 670 i~~~G~lfHIDFG~i 684 (805)
+|.+||+=-+|||..
T Consensus 501 LD~eGh~kiADFGlc 515 (694)
T KOG0694|consen 501 LDTEGHVKIADFGLC 515 (694)
T ss_pred EcccCcEEecccccc
Confidence 999999999999976
No 270
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.16 E-value=80 Score=28.92 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhh
Q 003651 369 SEEVRAYAVCILERA---DDDELQCYLLQLVQALR 400 (805)
Q Consensus 369 ~~~VR~yAV~~L~~~---~d~~L~~yLlQLVQaLk 400 (805)
|..||-||.+.|-++ ..++++.|+.++.-+|-
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999543 35677778888877654
No 271
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=5.8e+02 Score=33.14 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHH----hcCCchHHHHHHHHHHH
Q 003651 366 VFESEEVRAYAVCIL----ERADDDELQCYLLQLVQ 397 (805)
Q Consensus 366 ~f~~~~VR~yAV~~L----~~~~d~~L~~yLlQLVQ 397 (805)
...+++|-.+|...| +.++.+.|.-||++|++
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 445677777777766 45777888888888888
No 272
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=24.61 E-value=48 Score=38.14 Aligned_cols=86 Identities=24% Similarity=0.439 Sum_probs=53.0
Q ss_pred CCceeccceEEEecCCCc-eeeeccCCChhh--hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHH--hhcc--CCCCCCc
Q 003651 595 LDLHLTPYNVLATGQDEG-LLEFIPSRSLAQ--KFHPDEHGPFGITATCLETFIKSCAGYSVITY--ILGI--GDRHLDN 667 (805)
Q Consensus 595 ldl~l~~Y~Vl~t~~~~G-lIE~V~~~tl~~--~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tY--iLGI--gDRH~dN 667 (805)
-.+-.+-|..+.+..-.+ .||+.+.--+.. +..|+ +.|. ..+.+=|+.- .-+.+-| .||| .|--++|
T Consensus 136 HPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~--~~fs--e~~aRFYaAE--vl~ALEYLHmlGivYRDLKPEN 209 (459)
T KOG0610|consen 136 HPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPG--KRFS--ESAARFYAAE--VLLALEYLHMLGIVYRDLKPEN 209 (459)
T ss_pred CCccchhhheeeccceeEEEEecCCCccHHHHHhhCCC--Cccc--hhhHHHHHHH--HHHHHHHHHhhceeeccCCcce
Confidence 356678899888876554 579998533333 22332 2222 1222222221 2233444 4676 4888999
Q ss_pred eeEccCCCEEEEEeccccC
Q 003651 668 LLLRDDGRLFHVDFGYILG 686 (805)
Q Consensus 668 Imi~~~G~lfHIDFG~ilg 686 (805)
|||.++||+.-.||-.-+-
T Consensus 210 ILvredGHIMLsDFDLS~~ 228 (459)
T KOG0610|consen 210 ILVREDGHIMLSDFDLSLR 228 (459)
T ss_pred eEEecCCcEEeeecccccc
Confidence 9999999999999986654
No 273
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=24.24 E-value=8.4e+02 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||+|+++|.+.=+|||..
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~ 185 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMS 185 (304)
T ss_pred cCcchhheEEcCCccEEECCCccc
Confidence 799999999999999999999975
No 274
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=23.95 E-value=47 Score=35.56 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.5
Q ss_pred cCCCCCCceeEccCCCEEEEEeccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
-||=|++||+|+.+|.+.-+|||..
T Consensus 124 H~dl~p~NIll~~~~~~~l~dfg~~ 148 (305)
T cd05609 124 HRDLKPDNLLITSMGHIKLTDFGLS 148 (305)
T ss_pred ccCCchHHEEECCCCCEEEeeCCCc
Confidence 3688999999999999999999964
No 275
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=23.89 E-value=54 Score=33.65 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=42.5
Q ss_pred eccceEEEecCCCceeeecc--CCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHH-hhcc--CCCCCCceeEccC
Q 003651 599 LTPYNVLATGQDEGLLEFIP--SRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITY-ILGI--GDRHLDNLLLRDD 673 (805)
Q Consensus 599 l~~Y~Vl~t~~~~GlIE~V~--~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tY-iLGI--gDRH~dNImi~~~ 673 (805)
+...+++..+.++=++|+|+ ..++..-...... ..... .....+...-...| -.|| ||=+.-|||++++
T Consensus 70 v~vP~p~~~~~~~ivME~I~~~G~~~~~l~~~~~~-----~~~~~-~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~ 143 (188)
T PF01163_consen 70 VPVPKPYDYNRNVIVMEYIGEDGVPLPRLKDVDLS-----PEEPK-ELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG 143 (188)
T ss_dssp -SS--EEEEETTEEEEE--EETTEEGGCHHHCGGG-----GSTHH-HHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT
T ss_pred ccCCcEEEEeCCEEEEEecCCCccchhhHHhcccc-----chhHH-HHHHHHHHHHHHHHHhcCceecCCChhhEEeecc
Confidence 34556778889999999999 4444331111100 00112 22222222222222 4555 9999999999976
Q ss_pred CCEEEEEeccccCCC
Q 003651 674 GRLFHVDFGYILGRD 688 (805)
Q Consensus 674 G~lfHIDFG~ilg~~ 688 (805)
+++=||||-.....
T Consensus 144 -~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 144 -KVYIIDFGQAVDSS 157 (188)
T ss_dssp -CEEE--GTTEEETT
T ss_pred -eEEEEecCcceecC
Confidence 99999999776544
No 276
>PRK11768 serine/threonine protein kinase; Provisional
Probab=23.82 E-value=1.5e+02 Score=32.84 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHhhccCCCCCCceeEccCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCCccchhhHHHHHHHHHHHHHcC
Q 003651 654 ITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKS 731 (805)
Q Consensus 654 ~tYiLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~ 731 (805)
..+.+==||=|.+|||++ +| +.-|||+..- .++.- .++.-.+.|...+ -......+..+|...|.-
T Consensus 194 ~~~~liHgD~h~~NvL~~-d~-~~iIDFDd~~-~g~~i--------~DLa~~l~~~~~~-~~~~~~~~l~GY~~~r~l 259 (325)
T PRK11768 194 VRLLRLHGDCHPGNILWR-DG-PHFVDLDDAR-MGPAV--------QDLWMLLSGDRAE-QLMQLETLLEGYEEFCEF 259 (325)
T ss_pred CCccceecCCCchhcccc-CC-cEEEeCCCCC-CCCHH--------HHHHHHhccCcch-hHHHHHHHHHHhhccCCC
Confidence 356667799999999995 44 5669998662 11110 1222222222211 134556667777776653
No 277
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=23.60 E-value=4.7e+02 Score=27.22 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCceeeeccCCChhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCC-CEEEEEeccccC
Q 003651 610 DEGLLEFIPSRSLAQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG-RLFHVDFGYILG 686 (805)
Q Consensus 610 ~~GlIE~V~~~tl~~~~~~~~~~~~~~~~~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G-~lfHIDFG~ilg 686 (805)
-+-+.|+.+..++.+..... ..+ .......++..++----.-+-.|+ ||=.++|||++++| ++.=+|||..-.
T Consensus 84 ~~iv~e~~~~~~L~~~l~~~--~~l--~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~ 159 (267)
T PHA03390 84 HVLIMDYIKDGDLFDLLKKE--GKL--SEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKI 159 (267)
T ss_pred eEEEEEcCCCCcHHHHHHhc--CCC--CHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCcccee
Confidence 34456777766776522111 111 233334444444432222223344 78899999999887 999999996532
Q ss_pred --CCCCCCCCCccccHHHHHH
Q 003651 687 --RDPKPFPPPMKLCKEMVEA 705 (805)
Q Consensus 687 --~~p~pf~~PFrLT~~mv~~ 705 (805)
........+.-+.||+...
T Consensus 160 ~~~~~~~~~~~~y~aPE~~~~ 180 (267)
T PHA03390 160 IGTPSCYDGTLDYFSPEKIKG 180 (267)
T ss_pred cCCCccCCCCCcccChhhhcC
Confidence 2211122233456676543
No 278
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=23.29 E-value=5.1e+02 Score=31.28 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=77.3
Q ss_pred cCCCHHHHHHHHHHhcccCCCChhhhhhcCCCCC------CCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhccc
Q 003651 334 EWSDVQEAKQALELMGRWEMIDVCDALELLSPVF------ESEEVRAYAVCILER----ADDDELQCYLLQLVQALRFER 403 (805)
Q Consensus 334 ~W~~~~e~~~a~~lL~~W~~i~~~~aLeLL~~~f------~~~~VR~yAV~~L~~----~~d~~L~~yLlQLVQaLkyE~ 403 (805)
.|.....+-|.+..|..-+|...+..+.=+-|.- +++.||+-|.++|.+ .++.++..|+|-|++++--=.
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 7888888877777777777766666665555533 369999999999966 467889999999999986432
Q ss_pred -c-----------------c--chhHHHHHHHHhhcC-----cchhhHHhhhhhhhccCchhh
Q 003651 404 -S-----------------D--KSRLSQFLVQRSSHN-----IELASFLRWYVSVEFHDPVHA 441 (805)
Q Consensus 404 -~-----------------~--~s~L~~fLi~ra~~n-----~~i~~~l~W~L~~e~~~~~~~ 441 (805)
+ . .=+|.-=+++|++.. .+-+-..+|++-.+.+|+.-.
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH
Confidence 1 0 112333456666553 367888999999999887643
No 279
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=23.27 E-value=6.8e+02 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.4
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
=+|=+++||+++..|.+.-+|||...
T Consensus 125 H~dl~p~ni~i~~~~~~~l~d~~~~~ 150 (260)
T cd05073 125 HRDLRAANILVSASLVCKIADFGLAR 150 (260)
T ss_pred ccccCcceEEEcCCCcEEECCCccee
Confidence 36777899999999999999999764
No 280
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=22.99 E-value=33 Score=35.16 Aligned_cols=133 Identities=18% Similarity=0.287 Sum_probs=64.8
Q ss_pred eEEEEeCCCcchHHHH----HHHHHHHHHHHhhCCCCceeccceEEEecC-CCceeeeccCCChhhhcCCCCCCCCCChH
Q 003651 564 KMIFKKGDDIRQDQLV----VQMVSLMDRLLKLENLDLHLTPYNVLATGQ-DEGLLEFIPSRSLAQKFHPDEHGPFGITA 638 (805)
Q Consensus 564 ~~i~K~gDDLRqD~lv----lQli~lmd~ll~~~~ldl~l~~Y~Vl~t~~-~~GlIE~V~~~tl~~~~~~~~~~~~~~~~ 638 (805)
.+++|..+.-..+... .+=+.++..+ +..++ +..+.+..... -+-+.|.++..++.+.... .+.+ ..
T Consensus 26 ~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i---~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~~--~~~~--~~ 97 (260)
T PF00069_consen 26 KVAVKIIDKSEIEEEEREENIREIKILRRL-RHPNI---VQILDVFQDDNYLYIVMEYCPGGSLQDYLQK--NKPL--SE 97 (260)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHH-TBTTB---CHEEEEEEESSEEEEEEEEETTEBHHHHHHH--HSSB--BH
T ss_pred EEEEEEeccccccccccchhhhhhhccccc-ccccc---ccccccccccccccccccccccccccccccc--cccc--cc
Confidence 5677765433332222 2234566665 33332 33344443322 2234555555466541110 0111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEEecccc--CCCCCC----CCCCccccHHHHH
Q 003651 639 TCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL--GRDPKP----FPPPMKLCKEMVE 704 (805)
Q Consensus 639 ~~~~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHIDFG~il--g~~p~p----f~~PFrLT~~mv~ 704 (805)
.....++..++--...-+=.|+ +|=.++|||++.+|++.-+|||... ...... ...+.=..||++.
T Consensus 98 ~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 98 EEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344444444322111111343 7889999999999999999999864 222111 1233346677755
No 281
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=22.91 E-value=61 Score=34.14 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=25.6
Q ss_pred hhccCCCCCCceeEccCCCEEEEEeccccCCCC
Q 003651 657 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 689 (805)
Q Consensus 657 iLGIgDRH~dNImi~~~G~lfHIDFG~ilg~~p 689 (805)
+|-=||=|++|||++++| +.=|||.+.--.+|
T Consensus 147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp 178 (256)
T TIGR02721 147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI 178 (256)
T ss_pred eeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence 455599999999999887 78999988754443
No 282
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=22.84 E-value=8.9e+02 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.9
Q ss_pred hcc--CCCCCCceeEccCCCEEEEEecccc
Q 003651 658 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 658 LGI--gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
.|| +|=+++|||++++|.+-=+|||...
T Consensus 121 ~~iiH~dikp~Nili~~~~~~kl~Dfg~~~ 150 (285)
T cd05632 121 ENTVYRDLKPENILLDDYGHIRISDLGLAV 150 (285)
T ss_pred CCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence 455 7889999999999999999999663
No 283
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=22.77 E-value=45 Score=36.26 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.1
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++||||+.+|++.=+|||..
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCC
Confidence 788899999999999999999965
No 284
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=22.58 E-value=1.4e+02 Score=30.94 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||-+++||+++++|.+-=+|||+.-
T Consensus 122 ~dl~p~nili~~~~~~~l~df~~~~ 146 (283)
T cd05118 122 RDLKPENLLINTEGVLKLADFGLAR 146 (283)
T ss_pred cCcCHHHEEECCCCcEEEeeeeeeE
Confidence 8999999999999999999999763
No 285
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=22.55 E-value=1.1e+02 Score=32.73 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=23.3
Q ss_pred cCCCCCCceeEccCCCEEEEEecccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~il 685 (805)
-||=++.||+++++|++.=+|||+.-
T Consensus 139 H~dl~p~Nilv~~~~~~~l~dfg~~~ 164 (292)
T cd06657 139 HRDIKSDSILLTHDGRVKLSDFGFCA 164 (292)
T ss_pred cCCCCHHHEEECCCCCEEEcccccce
Confidence 49999999999999999999999753
No 286
>PRK05114 hypothetical protein; Provisional
Probab=22.07 E-value=1.3e+02 Score=25.12 Aligned_cols=44 Identities=9% Similarity=0.329 Sum_probs=36.4
Q ss_pred CCCCCCcCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Q 003651 745 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVSA 788 (805)
Q Consensus 745 ~~ip~~~~~~-~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s 788 (805)
+++|.++... ..+|.++++-..-++|..||+..+.+.|.+....
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 3788888644 4578999999999999999999999999887543
No 287
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.98 E-value=1.2e+02 Score=25.10 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=35.6
Q ss_pred cCCCCCCcCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Q 003651 744 GSNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVSA 788 (805)
Q Consensus 744 ~~~ip~~~~~~-~~~i~~l~~~~~l~~seeeA~~~~~~lI~~S~~s 788 (805)
.+++|.++.+. .++|.++++-..-++|..||+..+.+.|.+--..
T Consensus 2 ~~~lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~ 47 (60)
T COG3140 2 FAGLPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHKG 47 (60)
T ss_pred CCccccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhcc
Confidence 35788887643 4588999999999999999999998888775443
No 288
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=21.58 E-value=55 Score=34.36 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=23.2
Q ss_pred cCCCCCCceeEccCCCEEEEEeccc
Q 003651 660 IGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 660 IgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
-||-+++||+++++|.+.-+|||..
T Consensus 124 H~dl~p~Nil~~~~~~~~l~dfg~~ 148 (277)
T cd06640 124 HRDIKAANVLLSEQGDVKLADFGVA 148 (277)
T ss_pred CcCCChhhEEEcCCCCEEEcccccc
Confidence 3899999999999999999999976
No 289
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=21.45 E-value=8.8e+02 Score=24.74 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=+++|||++++|.+.=+|||..-
T Consensus 126 ~dl~p~ni~i~~~~~~~l~dfg~~~ 150 (260)
T cd05067 126 RDLRAANILVSETLCCKIADFGLAR 150 (260)
T ss_pred ccccHHhEEEcCCCCEEEccCccee
Confidence 6888999999999999999999763
No 290
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=21.43 E-value=8.6e+02 Score=29.80 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.7
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+|=.++||||+.+|++.=+|||..
T Consensus 128 rDLKP~NILl~~~g~vkL~DFGls 151 (669)
T cd05610 128 RDLKPDNMLISNEGHIKLTDFGLS 151 (669)
T ss_pred CCccHHHEEEcCCCCEEEEeCCCC
Confidence 577889999999999999999965
No 291
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=21.37 E-value=67 Score=34.81 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=22.7
Q ss_pred hhccCCCCCCceeEccCCCEE-EEEeccc
Q 003651 657 ILGIGDRHLDNLLLRDDGRLF-HVDFGYI 684 (805)
Q Consensus 657 iLGIgDRH~dNImi~~~G~lf-HIDFG~i 684 (805)
.|==||=|++|||++++|++. =||||..
T Consensus 186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a 214 (276)
T cd05152 186 VLVHGDLHPGHILIDEDARVTGLIDWTEA 214 (276)
T ss_pred eeEeCCCCCCcEEEeCCCCEEEEECcHhc
Confidence 444499999999999778764 7899976
No 292
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=21.27 E-value=4.3e+02 Score=28.37 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=31.6
Q ss_pred CCCCCCceeEccCCCEEEEEeccccCCCCCC--CCCCccccHHHHHHh
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYILGRDPKP--FPPPMKLCKEMVEAM 706 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~ilg~~p~p--f~~PFrLT~~mv~~m 706 (805)
||=+++||+++.+|++.=+|||......+.. ...+.=+.||++..+
T Consensus 145 ~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~ 192 (313)
T cd06633 145 RDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAM 192 (313)
T ss_pred CCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhcccc
Confidence 7888999999999999999999765433221 112223567776544
No 293
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=21.15 E-value=1.2e+02 Score=33.35 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=.++|||++.+|.+.-+|||..-
T Consensus 150 ~Dlkp~NIll~~~~~~kL~DfG~a~ 174 (364)
T cd07875 150 RDLKPSNIVVKSDCTLKILDFGLAR 174 (364)
T ss_pred CCCCHHHEEECCCCcEEEEeCCCcc
Confidence 7888999999999999999999763
No 294
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=21.11 E-value=1e+03 Score=25.33 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=.++|||++.+|++.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (314)
T cd05099 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (314)
T ss_pred ccccceeEEEcCCCcEEEccccccc
Confidence 7888999999999999999999764
No 295
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.02 E-value=1.2e+02 Score=25.86 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 003651 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALR 400 (805)
Q Consensus 368 ~~~~VR~yAV~~L~~~~d~~L~~yLlQLVQaLk 400 (805)
+++.||..|+.+|.++.+.+. ++.|+++|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~---~~~L~~~l~ 41 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEA---IPALIELLK 41 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhH---HHHHHHHHc
Confidence 568999999999999988866 455555664
No 296
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=20.95 E-value=1.5e+02 Score=36.98 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=58.7
Q ss_pred chhHhhhhccccCCCHHHHHHH-HHHhcccCCCChhhhhhcCC---C--CCCCHHHHHHHHHHHhcCCchHHHHHHHH-H
Q 003651 323 KRALTKFLRSVEWSDVQEAKQA-LELMGRWEMIDVCDALELLS---P--VFESEEVRAYAVCILERADDDELQCYLLQ-L 395 (805)
Q Consensus 323 ~~aL~k~L~sV~W~~~~e~~~a-~~lL~~W~~i~~~~aLeLL~---~--~f~~~~VR~yAV~~L~~~~d~~L~~yLlQ-L 395 (805)
+.-++.+++.|. ++..|++.. |-+|...+...|+.||.... . .-+|+.+|.+|++-|-.+.+.+|.-++.- +
T Consensus 54 ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~i 132 (757)
T COG5096 54 SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPI 132 (757)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456778888888 555666664 45677779999988776654 2 33578999999999999999997766554 6
Q ss_pred HHHhhccc
Q 003651 396 VQALRFER 403 (805)
Q Consensus 396 VQaLkyE~ 403 (805)
.|.|.+..
T Consensus 133 k~~l~d~~ 140 (757)
T COG5096 133 KKLLTDPH 140 (757)
T ss_pred HHHccCCc
Confidence 66666653
No 297
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=20.94 E-value=70 Score=34.46 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.2
Q ss_pred HhhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 656 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 656 YiLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
+.+-=||=|.+|||++. |.+.-|||+.+
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 55678999999999998 78999999865
No 298
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=20.80 E-value=54 Score=35.37 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=+++|||++.+|++.-+|||..
T Consensus 117 rDlkp~Nili~~~~~~kl~Dfg~~ 140 (312)
T cd05585 117 RDLKPENILLDYQGHIALCDFGLC 140 (312)
T ss_pred CCCCHHHeEECCCCcEEEEECccc
Confidence 688899999999999999999975
No 299
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=20.54 E-value=55 Score=33.42 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=20.7
Q ss_pred HhhccCCCCCCceeE-ccCCCEEEEEeccc
Q 003651 656 YILGIGDRHLDNLLL-RDDGRLFHVDFGYI 684 (805)
Q Consensus 656 YiLGIgDRH~dNImi-~~~G~lfHIDFG~i 684 (805)
.++-=+|=|.+|||+ +++|++.=|||-|.
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 577889999999999 68999999999775
No 300
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=20.37 E-value=98 Score=26.82 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCceeEc
Q 003651 642 ETFIKSCAGYSVITYILGIGDRHLDNLLLR 671 (805)
Q Consensus 642 ~~F~~S~Agysv~tYiLGIgDRH~dNImi~ 671 (805)
..-.+.+.-+.++.+++|=+|||..|+=+-
T Consensus 37 ~~~~~~l~~~~~fn~ligN~D~H~kN~s~l 66 (79)
T PF07804_consen 37 AADVRELFRRLVFNYLIGNTDRHLKNFSFL 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTBS---CCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCcCCEEEE
Confidence 455667777889999999999999998665
No 301
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=20.28 E-value=9.5e+02 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCCCCceeEccCCCEEEEEecccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYIL 685 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~il 685 (805)
||=+++||+++++|.+.=+|||...
T Consensus 126 ~dl~p~Nill~~~~~~~L~dfg~~~ 150 (262)
T cd05071 126 RDLRAANILVGENLVCKVADFGLAR 150 (262)
T ss_pred cccCcccEEEcCCCcEEeccCCcee
Confidence 7888999999999999999999763
No 302
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=20.28 E-value=64 Score=38.37 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=26.2
Q ss_pred HHHHHhhccC----CCCCCceeEccCCCEEEEEeccc
Q 003651 652 SVITYILGIG----DRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 652 sv~tYiLGIg----DRH~dNImi~~~G~lfHIDFG~i 684 (805)
..+-|+=+.| |--++|||++++||+-=.|||-.
T Consensus 185 dAleylH~~GIIHRDlKPENILLd~dmhikITDFGsA 221 (604)
T KOG0592|consen 185 DALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSA 221 (604)
T ss_pred HHHHHHHhcCceeccCChhheeEcCCCcEEEeecccc
Confidence 3455666655 66789999999999999999954
No 303
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=20.27 E-value=80 Score=32.85 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.7
Q ss_pred hhccCCCCCCceeEccCCCEEEEEeccc
Q 003651 657 ILGIGDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 657 iLGIgDRH~dNImi~~~G~lfHIDFG~i 684 (805)
.|==||=|++|||++.++..-=|||+..
T Consensus 164 ~l~HgD~~~~Nil~~~~~~~~iIDwe~a 191 (244)
T cd05150 164 VVTHGDACLPNIIVDPGKFSGFIDLGRL 191 (244)
T ss_pred EEECCCCCCccEEEeCCcEEEEEEcccc
Confidence 3444999999999999666668999866
No 304
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=20.26 E-value=48 Score=34.90 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||=.++|||++.+|.+.-+|||..
T Consensus 134 ~dlkp~Nil~~~~~~~kl~Dfg~~ 157 (290)
T cd07862 134 RDLKPQNILVTSSGQIKLADFGLA 157 (290)
T ss_pred CCCCHHHEEEcCCCCEEEccccce
Confidence 788999999999999999999975
No 305
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=20.15 E-value=3e+02 Score=27.61 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=51.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCC--ccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecC
Q 003651 53 PELYVECALYIDGAPFGLPMRTRLESMGPM--YCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (805)
Q Consensus 53 ~~l~V~~~l~~~~~~L~~p~~T~~~~f~~~--~~Wnewl~fpI~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (805)
.+..+-+.||.||+-.+ +|..++.... ...||-+.+ ++...|.. |++.||+..+ .....|+.+.+++-+.
T Consensus 35 ~~~~~~ikl~~N~k~V~---~T~~~~l~~dF~v~f~~~f~v--~i~~~Pes--i~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVS---RTRSRPLWSDFRVHFNEIFNV--QITRWPES--IKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred hheeEEEEEEECCEEEE---eeeeEecCCCeEEeccCEEEE--EEecCCCE--EEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 46677788899998885 4455554333 346665554 55668865 8999999876 5667899999999885
Q ss_pred Ccc
Q 003651 131 KMQ 133 (805)
Q Consensus 131 ~~~ 133 (805)
...
T Consensus 107 ~~~ 109 (168)
T PF15625_consen 107 TVH 109 (168)
T ss_pred ccc
Confidence 433
No 306
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=20.05 E-value=48 Score=36.50 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCCCCCceeEccCCCEEEEEeccc
Q 003651 661 GDRHLDNLLLRDDGRLFHVDFGYI 684 (805)
Q Consensus 661 gDRH~dNImi~~~G~lfHIDFG~i 684 (805)
||-+++||||+.+|.+.-+|||..
T Consensus 192 rDlkp~NIll~~~~~~kL~DfG~~ 215 (353)
T PLN00034 192 RDIKPSNLLINSAKNVKIADFGVS 215 (353)
T ss_pred cCCCHHHEEEcCCCCEEEcccccc
Confidence 788899999999999999999964
No 307
>PHA00451 protein kinase
Probab=20.03 E-value=1.3e+02 Score=32.88 Aligned_cols=37 Identities=30% Similarity=0.606 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCCCceeEccCCCEEEEE
Q 003651 642 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVD 680 (805)
Q Consensus 642 ~~F~~S~Agysv~tYiLGI--gDRH~dNImi~~~G~lfHID 680 (805)
..|+.+|--.- -|+.|| =|=|.+|||++++|..+-.|
T Consensus 174 ~~FIETCk~IR--kFF~GIASFDmHSGNiMf~~~g~p~ITD 212 (362)
T PHA00451 174 QEFIETCKMIR--KFFYGIASFDMHSGNIMFDQDGVPYITD 212 (362)
T ss_pred hhHHHHHHHHH--HHHhhhhcccccCCceeeCCCCCeEecC
Confidence 46777775432 234444 39999999999999987766
Done!