Query 003653
Match_columns 805
No_of_seqs 334 out of 2883
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1E-111 2E-116 992.3 65.6 647 93-799 2-688 (688)
2 PRK03705 glycogen debranching 100.0 2E-111 5E-116 981.9 61.7 638 90-800 4-658 (658)
3 COG1523 PulA Type II secretory 100.0 1E-108 3E-113 946.6 50.4 656 88-803 10-695 (697)
4 PRK14510 putative bifunctional 100.0 1.1E-98 2E-103 926.2 59.1 606 90-743 8-648 (1221)
5 TIGR02104 pulA_typeI pullulana 100.0 4.3E-89 9.3E-94 800.3 50.2 559 94-758 8-601 (605)
6 TIGR02102 pullulan_Gpos pullul 100.0 5.4E-88 1.2E-92 810.8 56.4 612 94-801 315-1006(1111)
7 PLN02877 alpha-amylase/limit d 100.0 3.3E-88 7.2E-93 795.2 49.6 636 69-800 189-969 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 1.3E-87 2.8E-92 793.9 48.5 634 69-800 99-897 (898)
9 KOG0470 1,4-alpha-glucan branc 100.0 1.6E-79 3.6E-84 684.3 39.8 638 95-798 102-752 (757)
10 TIGR02402 trehalose_TreZ malto 100.0 2.9E-73 6.4E-78 655.6 40.4 473 107-738 1-540 (542)
11 PRK12568 glycogen branching en 100.0 6.8E-72 1.5E-76 647.0 50.9 579 96-800 125-729 (730)
12 PRK12313 glycogen branching en 100.0 7.6E-72 1.6E-76 658.5 48.5 574 96-803 25-631 (633)
13 PRK14706 glycogen branching en 100.0 1.4E-71 3E-76 647.6 49.5 572 97-802 26-624 (639)
14 PRK05402 glycogen branching en 100.0 2E-71 4.4E-76 661.9 45.7 575 95-801 117-725 (726)
15 TIGR01515 branching_enzym alph 100.0 3.2E-71 7E-76 648.8 44.3 568 97-797 16-612 (613)
16 PRK14705 glycogen branching en 100.0 1.2E-69 2.6E-74 655.6 46.8 564 97-800 622-1223(1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 8E-67 1.7E-71 605.6 49.3 596 94-803 103-734 (758)
18 PRK10785 maltodextrin glucosid 100.0 2.1E-64 4.6E-69 589.7 40.4 486 102-743 16-568 (598)
19 PLN02960 alpha-amylase 100.0 5.9E-62 1.3E-66 563.0 48.4 544 147-801 323-893 (897)
20 COG0296 GlgB 1,4-alpha-glucan 100.0 1.4E-61 3.1E-66 548.5 36.3 574 93-798 21-627 (628)
21 PRK10933 trehalose-6-phosphate 100.0 2.8E-58 6.1E-63 532.1 36.7 453 235-800 7-551 (551)
22 TIGR02403 trehalose_treC alpha 100.0 1.9E-58 4.2E-63 534.4 33.9 452 235-798 1-542 (543)
23 TIGR02456 treS_nterm trehalose 100.0 4E-58 8.7E-63 532.9 33.0 460 235-799 2-538 (539)
24 PRK09505 malS alpha-amylase; R 100.0 3.1E-55 6.7E-60 510.8 29.2 404 231-733 182-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 4.5E-50 9.7E-55 460.1 30.3 386 261-798 19-479 (479)
26 PLN03244 alpha-amylase; Provis 100.0 6.5E-44 1.4E-48 405.0 43.3 515 145-801 326-868 (872)
27 PLN00196 alpha-amylase; Provis 100.0 3.1E-43 6.8E-48 392.7 29.3 343 260-756 40-420 (428)
28 PF00128 Alpha-amylase: Alpha 100.0 1.5E-44 3.3E-49 392.3 15.5 285 261-640 1-313 (316)
29 PLN02361 alpha-amylase 100.0 2.3E-41 4.9E-46 373.3 29.6 302 262-691 27-355 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 3.4E-39 7.4E-44 359.3 23.2 398 245-739 4-467 (470)
31 PRK13840 sucrose phosphorylase 100.0 6.3E-38 1.4E-42 351.2 27.0 403 238-741 3-475 (495)
32 COG0366 AmyA Glycosidases [Car 100.0 4.9E-38 1.1E-42 365.1 23.2 413 239-744 1-495 (505)
33 KOG0471 Alpha-amylase [Carbohy 100.0 5.6E-36 1.2E-40 344.9 27.3 456 234-798 13-544 (545)
34 PLN02784 alpha-amylase 100.0 1.6E-35 3.4E-40 342.0 30.8 307 236-682 496-836 (894)
35 TIGR02455 TreS_stutzeri trehal 100.0 1.3E-34 2.8E-39 324.4 34.2 481 237-803 50-685 (688)
36 TIGR02401 trehalose_TreY malto 100.0 2E-30 4.3E-35 303.3 29.7 82 260-365 12-93 (825)
37 PRK14511 maltooligosyl trehalo 100.0 3.5E-26 7.5E-31 268.8 33.7 83 260-366 16-98 (879)
38 PF14872 GHL5: Hypothetical gl 99.9 2.9E-20 6.2E-25 205.1 29.4 291 97-436 27-393 (811)
39 KOG2212 Alpha-amylase [Carbohy 99.9 2.1E-20 4.6E-25 192.2 23.2 379 262-758 38-466 (504)
40 smart00642 Aamy Alpha-amylase 99.9 3.5E-22 7.5E-27 196.4 8.9 97 243-364 1-97 (166)
41 cd02852 Isoamylase_N_term Isoa 99.8 6.1E-18 1.3E-22 157.6 12.3 101 99-201 1-101 (119)
42 cd02856 Glycogen_debranching_e 99.7 2.1E-17 4.5E-22 149.8 11.9 97 97-201 1-97 (103)
43 cd02860 Pullulanase_N_term Pul 99.6 5.7E-16 1.2E-20 139.7 9.9 93 98-203 1-93 (100)
44 PRK14507 putative bifunctional 99.6 2.6E-15 5.6E-20 187.6 9.8 91 239-364 744-834 (1693)
45 PF02922 CBM_48: Carbohydrate- 99.4 2E-13 4.4E-18 119.2 8.0 81 97-191 1-85 (85)
46 COG3280 TreY Maltooligosyl tre 99.3 1.5E-12 3.2E-17 147.3 6.2 81 261-365 16-96 (889)
47 TIGR01531 glyc_debranch glycog 99.3 1.9E-12 4.1E-17 157.4 7.4 88 260-368 128-216 (1464)
48 cd02853 MTHase_N_term Maltooli 99.3 1E-11 2.2E-16 108.5 8.2 71 99-194 1-72 (85)
49 cd02854 Glycogen_branching_enz 99.2 7E-11 1.5E-15 105.8 8.3 79 103-197 3-88 (99)
50 cd02855 Glycogen_branching_enz 98.9 8.7E-09 1.9E-13 93.8 9.2 86 97-197 9-98 (106)
51 PF11852 DUF3372: Domain of un 98.7 1.5E-08 3.2E-13 98.0 6.2 117 665-800 41-167 (168)
52 cd02858 Esterase_N_term Estera 98.7 8.5E-08 1.8E-12 83.6 8.4 67 104-194 5-73 (85)
53 PF11941 DUF3459: Domain of un 98.7 5.2E-08 1.1E-12 85.7 7.1 89 670-797 1-89 (89)
54 PF14701 hDGE_amylase: glucano 98.4 5.3E-07 1.1E-11 99.8 9.2 90 260-368 18-108 (423)
55 PRK05402 glycogen branching en 98.4 2.7E-07 5.9E-12 111.6 7.1 79 97-194 20-98 (726)
56 PF14871 GHL6: Hypothetical gl 98.4 1.9E-06 4.1E-11 81.4 9.9 125 269-432 5-132 (132)
57 PF02638 DUF187: Glycosyl hydr 98.3 3.5E-06 7.7E-11 91.6 11.4 142 262-431 17-161 (311)
58 cd02688 E_set E or "early" set 98.2 9.5E-06 2.1E-10 69.7 8.6 58 105-171 4-62 (83)
59 cd02861 E_set_proteins_like E 98.1 8.5E-06 1.8E-10 70.6 7.8 67 106-195 3-70 (82)
60 PF02806 Alpha-amylase_C: Alph 98.0 1.3E-05 2.8E-10 71.4 5.8 86 709-800 7-94 (95)
61 COG1649 Uncharacterized protei 97.7 0.00013 2.9E-09 80.7 9.3 141 262-433 62-208 (418)
62 PF02324 Glyco_hydro_70: Glyco 97.5 0.00018 3.8E-09 82.3 6.8 112 236-363 562-673 (809)
63 cd06593 GH31_xylosidase_YicI Y 97.2 0.0019 4E-08 70.6 10.1 94 338-438 67-163 (308)
64 cd06592 GH31_glucosidase_KIAA1 97.1 0.0032 7E-08 68.5 11.1 91 338-434 71-165 (303)
65 PF02065 Melibiase: Melibiase; 96.9 0.0074 1.6E-07 67.7 11.9 93 337-437 104-196 (394)
66 PRK14507 putative bifunctional 96.9 0.0089 1.9E-07 77.1 13.7 120 619-756 1502-1665(1693)
67 cd06597 GH31_transferase_CtsY 96.9 0.0023 4.9E-08 70.8 7.5 96 338-434 86-187 (340)
68 PF02324 Glyco_hydro_70: Glyco 96.8 0.0075 1.6E-07 69.5 10.7 291 398-758 143-483 (809)
69 cd06594 GH31_glucosidase_YihQ 96.7 0.0034 7.3E-08 68.7 6.9 95 338-437 72-169 (317)
70 KOG3625 Alpha amylase [Carbohy 96.5 0.0027 5.8E-08 74.5 5.0 90 260-368 138-228 (1521)
71 PF10438 Cyc-maltodext_C: Cycl 96.4 0.0035 7.6E-08 53.3 3.8 71 710-799 8-78 (78)
72 cd06602 GH31_MGAM_SI_GAA This 96.3 0.01 2.2E-07 65.6 8.2 94 340-434 69-165 (339)
73 cd06591 GH31_xylosidase_XylS X 96.3 0.0084 1.8E-07 65.7 7.4 91 338-434 67-159 (319)
74 smart00632 Aamy_C Aamy_C domai 96.2 0.028 6.1E-07 48.4 8.3 73 708-799 5-78 (81)
75 cd06599 GH31_glycosidase_Aec37 96.1 0.01 2.3E-07 65.0 6.9 91 338-434 74-168 (317)
76 PRK14508 4-alpha-glucanotransf 96.0 0.26 5.6E-06 57.2 17.8 25 336-360 197-221 (497)
77 cd06600 GH31_MGAM-like This fa 95.9 0.021 4.5E-07 62.6 7.6 93 338-434 65-160 (317)
78 cd02859 AMPKbeta_GBD_like AMP- 95.7 0.028 6E-07 48.2 6.2 55 106-171 3-57 (79)
79 PF13200 DUF4015: Putative gly 95.6 0.072 1.6E-06 57.8 10.5 134 262-435 11-148 (316)
80 PF13199 Glyco_hydro_66: Glyco 95.6 0.086 1.9E-06 61.5 11.4 142 262-436 116-270 (559)
81 PF08533 Glyco_hydro_42C: Beta 95.4 0.032 7E-07 44.7 5.2 53 716-798 5-57 (58)
82 PLN02635 disproportionating en 95.3 0.054 1.2E-06 63.0 8.6 23 337-359 224-246 (538)
83 PF01055 Glyco_hydro_31: Glyco 95.2 0.021 4.4E-07 65.7 5.0 97 337-436 83-182 (441)
84 cd06604 GH31_glucosidase_II_Ma 95.1 0.046 1E-06 60.5 7.2 92 338-434 65-159 (339)
85 cd06598 GH31_transferase_CtsZ 95.1 0.049 1.1E-06 59.7 7.3 91 338-434 71-164 (317)
86 PRK10658 putative alpha-glucos 95.1 0.041 8.8E-07 66.1 7.0 94 338-438 326-422 (665)
87 COG3280 TreY Maltooligosyl tre 94.8 0.011 2.5E-07 68.7 1.2 96 619-732 714-826 (889)
88 PRK14582 pgaB outer membrane N 94.7 0.23 5E-06 59.2 11.9 137 262-436 332-470 (671)
89 PRK10426 alpha-glucosidase; Pr 94.1 0.095 2.1E-06 62.7 6.9 95 338-438 270-367 (635)
90 cd06603 GH31_GANC_GANAB_alpha 93.8 0.14 3E-06 56.8 7.1 93 338-434 65-162 (339)
91 PRK14510 putative bifunctional 93.1 1.1 2.4E-05 57.6 14.5 33 258-290 740-772 (1221)
92 cd06595 GH31_xylosidase_XylS-l 92.8 0.19 4.2E-06 54.4 6.1 84 338-433 75-158 (292)
93 PLN02763 hydrolase, hydrolyzin 92.0 0.4 8.7E-06 59.3 8.0 92 338-434 242-336 (978)
94 COG1501 Alpha-glucosidases, fa 91.8 0.35 7.6E-06 58.9 7.3 93 338-437 322-418 (772)
95 cd06542 GH18_EndoS-like Endo-b 91.5 0.6 1.3E-05 49.4 7.9 63 336-432 50-112 (255)
96 PF00150 Cellulase: Cellulase 91.3 0.21 4.6E-06 53.1 4.3 64 265-360 22-85 (281)
97 cd02857 CD_pullulan_degrading_ 91.0 0.84 1.8E-05 41.7 7.5 66 97-169 12-80 (116)
98 TIGR00217 malQ 4-alpha-glucano 89.8 0.93 2E-05 52.9 8.0 24 337-360 212-235 (513)
99 PRK11052 malQ 4-alpha-glucanot 89.8 3.8 8.2E-05 49.6 13.3 31 258-288 159-189 (695)
100 cd06562 GH20_HexA_HexB-like Be 88.6 2.1 4.5E-05 47.6 9.4 81 335-424 68-149 (348)
101 PF09154 DUF1939: Domain of un 88.5 0.74 1.6E-05 36.8 4.2 55 726-797 1-56 (57)
102 COG3589 Uncharacterized conser 87.4 0.66 1.4E-05 49.9 4.3 26 336-361 48-73 (360)
103 cd06563 GH20_chitobiase-like T 87.3 3.6 7.8E-05 45.9 10.4 79 335-423 84-164 (357)
104 PLN02950 4-alpha-glucanotransf 87.1 9.3 0.0002 47.8 14.6 57 259-325 278-334 (909)
105 cd02871 GH18_chitinase_D-like 87.1 1.6 3.5E-05 47.7 7.4 61 336-433 59-119 (312)
106 PF14488 DUF4434: Domain of un 86.8 1.5 3.3E-05 43.2 6.2 70 264-361 20-89 (166)
107 PLN03244 alpha-amylase; Provis 86.7 0.75 1.6E-05 55.2 4.7 62 93-158 118-181 (872)
108 cd02875 GH18_chitobiase Chitob 86.6 1.2 2.5E-05 49.8 6.0 54 340-432 67-120 (358)
109 cd06564 GH20_DspB_LnbB-like Gl 86.5 2.6 5.7E-05 46.4 8.6 75 335-424 80-155 (326)
110 cd06601 GH31_lyase_GLase GLase 86.3 1.6 3.6E-05 48.0 6.9 67 339-433 66-132 (332)
111 cd06565 GH20_GcnA-like Glycosy 86.3 3.4 7.4E-05 44.9 9.3 115 263-424 16-131 (301)
112 PF02446 Glyco_hydro_77: 4-alp 85.5 0.86 1.9E-05 53.1 4.4 24 337-360 192-215 (496)
113 PF07745 Glyco_hydro_53: Glyco 84.9 2.5 5.5E-05 46.4 7.4 58 267-363 27-84 (332)
114 KOG1065 Maltase glucoamylase a 84.6 3.8 8.3E-05 49.3 9.1 92 339-434 353-448 (805)
115 cd06568 GH20_SpHex_like A subg 83.8 6.5 0.00014 43.3 10.1 78 335-421 73-151 (329)
116 COG1640 MalQ 4-alpha-glucanotr 83.7 29 0.00063 40.4 15.4 26 337-362 210-235 (520)
117 PF02449 Glyco_hydro_42: Beta- 83.3 4.2 9.2E-05 45.6 8.6 123 264-432 10-136 (374)
118 cd06545 GH18_3CO4_chitinase Th 83.2 3 6.4E-05 44.1 6.9 63 336-432 45-107 (253)
119 cd02742 GH20_hexosaminidase Be 82.8 3.8 8.3E-05 44.6 7.8 77 335-423 70-147 (303)
120 PF05913 DUF871: Bacterial pro 82.3 0.95 2.1E-05 50.2 2.8 26 336-361 46-71 (357)
121 COG1523 PulA Type II secretory 81.5 4.9 0.00011 48.4 8.5 87 93-198 62-155 (697)
122 TIGR01531 glyc_debranch glycog 80.9 25 0.00053 45.5 14.5 60 404-492 487-546 (1464)
123 cd06589 GH31 The enzymes of gl 79.9 2.6 5.7E-05 44.9 5.1 52 338-436 67-118 (265)
124 PRK12568 glycogen branching en 77.7 4.7 0.0001 48.9 6.8 76 97-194 29-105 (730)
125 PF02903 Alpha-amylase_N: Alph 74.4 11 0.00025 34.8 7.1 69 102-170 18-89 (120)
126 PF14883 GHL13: Hypothetical g 74.3 34 0.00073 36.6 11.2 122 267-430 20-142 (294)
127 cd06570 GH20_chitobiase-like_1 72.9 18 0.0004 39.4 9.4 79 335-423 66-146 (311)
128 PF01301 Glyco_hydro_35: Glyco 72.8 3.3 7.2E-05 45.4 3.6 60 265-358 25-84 (319)
129 PF00728 Glyco_hydro_20: Glyco 70.6 2.8 6E-05 46.5 2.4 82 335-424 71-156 (351)
130 PF01120 Alpha_L_fucos: Alpha- 70.6 20 0.00043 39.8 9.2 119 270-434 97-216 (346)
131 PF10566 Glyco_hydro_97: Glyco 70.0 17 0.00037 38.8 8.0 65 260-357 28-93 (273)
132 PF13204 DUF4038: Protein of u 69.0 8.2 0.00018 41.7 5.5 76 264-361 30-110 (289)
133 TIGR03849 arch_ComA phosphosul 68.6 9 0.00019 39.9 5.4 22 336-357 99-120 (237)
134 cd06569 GH20_Sm-chitobiase-lik 67.6 13 0.00029 42.7 7.1 87 335-421 95-191 (445)
135 COG2730 BglC Endoglucanase [Ca 65.8 9.3 0.0002 43.5 5.4 61 267-358 76-137 (407)
136 COG3867 Arabinogalactan endo-1 65.7 14 0.00031 39.3 6.1 62 269-362 68-129 (403)
137 PF02679 ComA: (2R)-phospho-3- 63.9 11 0.00024 39.5 5.0 55 260-358 73-134 (244)
138 cd00598 GH18_chitinase-like Th 61.0 24 0.00052 35.6 7.0 30 404-433 84-113 (210)
139 cd02874 GH18_CFLE_spore_hydrol 60.4 12 0.00026 40.8 4.9 66 339-433 47-112 (313)
140 PF03198 Glyco_hydro_72: Gluca 59.6 10 0.00022 41.1 3.9 20 267-286 56-75 (314)
141 PLN02808 alpha-galactosidase 59.1 61 0.0013 36.5 10.1 72 711-802 308-386 (386)
142 smart00812 Alpha_L_fucos Alpha 57.8 62 0.0014 36.5 10.0 113 270-433 87-202 (384)
143 cd02877 GH18_hevamine_XipI_cla 57.3 30 0.00065 37.2 7.1 20 337-356 59-78 (280)
144 PRK14508 4-alpha-glucanotransf 56.1 8.8 0.00019 44.7 3.0 51 259-324 21-72 (497)
145 cd06546 GH18_CTS3_chitinase GH 55.6 35 0.00076 36.2 7.2 28 405-432 93-120 (256)
146 PLN03059 beta-galactosidase; P 52.9 17 0.00037 44.5 4.8 58 265-356 60-117 (840)
147 PRK10076 pyruvate formate lyas 50.0 61 0.0013 33.3 7.7 67 264-355 145-211 (213)
148 PRK15452 putative protease; Pr 49.0 75 0.0016 36.6 9.0 24 336-361 45-68 (443)
149 PF07071 DUF1341: Protein of u 48.4 33 0.00071 34.6 5.1 43 267-353 138-180 (218)
150 PRK14705 glycogen branching en 48.0 40 0.00087 43.5 7.1 77 97-194 522-601 (1224)
151 TIGR03356 BGL beta-galactosida 47.4 28 0.00062 39.8 5.3 65 261-358 51-115 (427)
152 TIGR01370 cysRS possible cyste 46.3 40 0.00087 36.8 6.0 37 399-436 136-172 (315)
153 PF02446 Glyco_hydro_77: 4-alp 45.4 18 0.00038 42.4 3.3 52 259-324 13-65 (496)
154 cd06547 GH85_ENGase Endo-beta- 44.2 17 0.00037 40.2 2.8 65 341-435 50-114 (339)
155 KOG2499 Beta-N-acetylhexosamin 43.7 87 0.0019 35.9 8.1 30 335-364 248-278 (542)
156 PTZ00445 p36-lilke protein; Pr 41.8 48 0.001 34.0 5.3 68 264-355 28-96 (219)
157 PF13380 CoA_binding_2: CoA bi 40.4 29 0.00063 31.9 3.3 21 265-285 67-87 (116)
158 PRK05628 coproporphyrinogen II 40.4 44 0.00095 37.5 5.4 63 268-364 109-172 (375)
159 PF09260 DUF1966: Domain of un 39.2 98 0.0021 27.3 6.2 73 710-801 5-83 (91)
160 PRK13210 putative L-xylulose 5 36.8 1.9E+02 0.004 30.6 9.4 54 265-355 17-70 (284)
161 PF01212 Beta_elim_lyase: Beta 36.7 31 0.00068 37.2 3.3 24 335-358 143-166 (290)
162 smart00518 AP2Ec AP endonuclea 35.8 2E+02 0.0043 30.3 9.4 52 266-355 12-63 (273)
163 PLN02950 4-alpha-glucanotransf 35.8 56 0.0012 41.1 5.7 60 106-169 154-218 (909)
164 PLN03236 4-alpha-glucanotransf 35.4 48 0.001 40.5 4.9 58 258-325 77-134 (745)
165 KOG3625 Alpha amylase [Carbohy 35.4 6.3E+02 0.014 31.7 13.6 59 404-492 509-568 (1521)
166 PF04914 DltD_C: DltD C-termin 34.2 82 0.0018 29.7 5.3 56 336-425 35-90 (130)
167 PF08821 CGGC: CGGC domain; I 33.8 94 0.002 28.3 5.4 27 263-289 51-77 (107)
168 cd06543 GH18_PF-ChiA-like PF-C 33.7 92 0.002 33.8 6.3 62 336-434 53-114 (294)
169 KOG0259 Tyrosine aminotransfer 33.5 62 0.0014 35.9 4.9 30 336-365 218-247 (447)
170 cd05814 CBM20_Prei4 Prei4, N-t 33.3 1.1E+02 0.0023 28.3 5.9 62 106-169 2-67 (120)
171 TIGR01211 ELP3 histone acetylt 33.0 61 0.0013 38.1 5.1 61 268-362 207-267 (522)
172 TIGR03581 EF_0839 conserved hy 33.0 61 0.0013 33.2 4.4 22 267-288 138-159 (236)
173 PRK08207 coproporphyrinogen II 32.9 74 0.0016 37.1 5.8 63 267-363 269-332 (488)
174 PRK11052 malQ 4-alpha-glucanot 32.7 56 0.0012 39.8 4.8 21 549-569 539-559 (695)
175 TIGR00433 bioB biotin syntheta 32.5 80 0.0017 33.9 5.7 60 267-361 123-182 (296)
176 PLN02692 alpha-galactosidase 32.1 2.8E+02 0.006 31.6 9.8 73 711-802 332-411 (412)
177 PRK13384 delta-aminolevulinic 31.4 1.2E+02 0.0027 32.8 6.6 51 238-288 31-85 (322)
178 TIGR00539 hemN_rel putative ox 31.0 73 0.0016 35.5 5.2 62 268-363 101-163 (360)
179 COG1242 Predicted Fe-S oxidore 30.7 1.6E+02 0.0034 31.5 7.0 58 336-437 167-224 (312)
180 PRK01060 endonuclease IV; Prov 30.7 71 0.0015 34.0 4.9 53 263-353 11-63 (281)
181 PRK08208 coproporphyrinogen II 30.6 71 0.0015 36.6 5.1 29 336-364 176-205 (430)
182 KOG0496 Beta-galactosidase [Ca 30.6 73 0.0016 37.8 5.1 24 336-359 87-110 (649)
183 PLN02635 disproportionating en 30.2 44 0.00095 39.3 3.3 31 259-289 44-75 (538)
184 cd04824 eu_ALAD_PBGS_cysteine_ 29.8 1.4E+02 0.003 32.5 6.6 27 262-288 49-75 (320)
185 PRK05904 coproporphyrinogen II 29.5 83 0.0018 35.0 5.3 63 268-364 104-167 (353)
186 PRK14581 hmsF outer membrane N 29.2 4.1E+02 0.0088 32.4 11.2 128 266-431 336-465 (672)
187 PF14509 GH97_C: Glycosyl-hydr 29.2 1.2E+02 0.0027 27.3 5.4 87 711-801 14-103 (103)
188 cd05808 CBM20_alpha_amylase Al 28.8 1.2E+02 0.0026 26.3 5.3 59 107-169 3-64 (95)
189 PRK07094 biotin synthase; Prov 28.8 77 0.0017 34.6 4.8 63 267-363 129-191 (323)
190 PLN03236 4-alpha-glucanotransf 28.6 73 0.0016 38.9 4.9 24 337-360 274-297 (745)
191 cd05816 CBM20_DPE2_repeat2 Dis 28.5 1.6E+02 0.0035 26.0 6.0 59 107-169 2-65 (99)
192 PRK05660 HemN family oxidoredu 28.3 91 0.002 35.0 5.4 63 268-364 108-171 (378)
193 COG1809 (2R)-phospho-3-sulfola 28.0 85 0.0018 32.2 4.4 21 336-356 118-138 (258)
194 TIGR01210 conserved hypothetic 27.8 93 0.002 34.0 5.2 27 335-361 153-179 (313)
195 PLN02803 beta-amylase 27.8 2.3E+02 0.0051 33.0 8.4 85 237-364 84-171 (548)
196 TIGR01233 lacG 6-phospho-beta- 27.4 1.9E+02 0.004 33.7 7.8 101 261-426 50-150 (467)
197 TIGR02867 spore_II_P stage II 27.2 1.9E+02 0.0041 29.4 6.9 29 259-287 28-57 (196)
198 PRK14457 ribosomal RNA large s 27.0 1.9E+02 0.004 32.2 7.4 68 240-355 256-324 (345)
199 PRK11194 ribosomal RNA large s 26.8 2E+02 0.0042 32.4 7.6 68 240-355 263-331 (372)
200 COG1306 Uncharacterized conser 26.7 1.7E+02 0.0037 31.5 6.5 139 264-436 77-221 (400)
201 cd04823 ALAD_PBGS_aspartate_ri 26.5 1.6E+02 0.0035 32.0 6.4 27 262-288 52-78 (320)
202 COG3345 GalA Alpha-galactosida 26.4 75 0.0016 37.0 4.1 140 262-436 307-446 (687)
203 PRK14462 ribosomal RNA large s 25.8 2E+02 0.0043 32.2 7.3 70 238-355 263-332 (356)
204 PF00490 ALAD: Delta-aminolevu 25.6 1.3E+02 0.0028 32.8 5.5 135 238-429 27-165 (324)
205 PRK11145 pflA pyruvate formate 25.0 1.6E+02 0.0035 30.6 6.3 81 239-354 164-245 (246)
206 cd00384 ALAD_PBGS Porphobilino 24.9 3.8E+02 0.0083 29.1 8.8 26 262-287 49-74 (314)
207 PRK08599 coproporphyrinogen II 24.8 1.1E+02 0.0024 34.3 5.2 63 268-364 101-164 (377)
208 cd08560 GDPD_EcGlpQ_like_1 Gly 24.5 1.4E+02 0.0031 33.3 5.9 20 339-358 280-299 (356)
209 cd00958 DhnA Class I fructose- 24.5 1.2E+02 0.0027 31.3 5.2 59 261-359 73-131 (235)
210 PF15640 Tox-MPTase4: Metallop 24.3 76 0.0017 29.5 3.0 24 333-356 18-41 (132)
211 PF07894 DUF1669: Protein of u 24.2 61 0.0013 34.7 2.8 23 336-359 136-158 (284)
212 TIGR03471 HpnJ hopanoid biosyn 24.0 1.1E+02 0.0025 35.3 5.4 28 335-362 321-348 (472)
213 TIGR03470 HpnH hopanoid biosyn 23.8 2.2E+02 0.0048 31.1 7.3 21 259-279 144-164 (318)
214 PF01791 DeoC: DeoC/LacD famil 23.5 66 0.0014 33.5 2.9 59 267-362 79-137 (236)
215 PRK06256 biotin synthase; Vali 23.5 96 0.0021 34.1 4.4 26 336-361 186-211 (336)
216 TIGR00542 hxl6Piso_put hexulos 23.4 96 0.0021 33.0 4.3 54 264-354 16-69 (279)
217 PRK13347 coproporphyrinogen II 22.9 1.3E+02 0.0028 34.8 5.4 63 268-364 153-216 (453)
218 PF03711 OKR_DC_1_C: Orn/Lys/A 22.8 90 0.0019 29.7 3.4 37 624-685 87-123 (136)
219 PRK09856 fructoselysine 3-epim 22.7 1.2E+02 0.0027 31.9 5.0 20 265-284 14-33 (275)
220 PRK04302 triosephosphate isome 22.6 1.4E+02 0.0031 30.7 5.2 22 336-357 100-121 (223)
221 PRK07379 coproporphyrinogen II 22.5 1.3E+02 0.0028 34.2 5.2 63 268-364 116-179 (400)
222 cd06548 GH18_chitinase The GH1 22.4 84 0.0018 34.4 3.6 28 404-431 105-132 (322)
223 COG1891 Uncharacterized protei 21.6 42 0.00091 33.0 0.9 23 336-358 166-188 (235)
224 PRK08446 coproporphyrinogen II 21.6 1.6E+02 0.0034 32.7 5.6 63 267-363 98-161 (350)
225 PRK06294 coproporphyrinogen II 21.4 1.5E+02 0.0033 33.2 5.4 63 268-364 104-167 (370)
226 PRK09852 cryptic 6-phospho-bet 21.0 1.4E+02 0.0029 34.8 5.1 68 261-362 68-135 (474)
227 PF03644 Glyco_hydro_85: Glyco 20.8 89 0.0019 34.1 3.4 20 341-360 46-65 (311)
228 PRK09249 coproporphyrinogen II 20.2 1.7E+02 0.0036 33.9 5.6 63 268-364 152-215 (453)
229 TIGR00538 hemN oxygen-independ 20.2 1.5E+02 0.0033 34.2 5.3 63 268-364 152-215 (455)
230 COG0134 TrpC Indole-3-glycerol 20.1 1.1E+02 0.0024 32.4 3.6 22 336-357 142-163 (254)
231 cd02876 GH18_SI-CLP Stabilin-1 20.1 92 0.002 34.0 3.3 28 404-431 88-115 (318)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.1e-111 Score=992.29 Aligned_cols=647 Identities=43% Similarity=0.788 Sum_probs=545.6
Q ss_pred CCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCcc
Q 003653 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (805)
Q Consensus 93 g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~ 172 (805)
|.+.||||++.++||+|+||||+|++|+|+||+..+ ..+..+++|. .+++|+|+++|+++.+|.+|+|+|+|.+
T Consensus 2 g~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~---~~~~~~~~m~---~~~~gvW~~~v~~~~~g~~Y~yrv~g~~ 75 (688)
T TIGR02100 2 GMPFPLGATWDGQGVNFALFSANAEKVELCLFDAQG---EKEEARLPLP---ERTDDIWHGYLPGAQPGQLYGYRVHGPY 75 (688)
T ss_pred CCCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCC---CceeeEEecc---cCCCCEEEEEECCCCCCCEEEEEEeeee
Confidence 789999999999999999999999999999996422 1233467774 4578999999999999999999999988
Q ss_pred CCCCCccccCcccccCcccceeeeccccCCC-------CCC--------CCCCCcceecccCCCCCCCCCCC-CCCCCCC
Q 003653 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVL-------GPD--------ENCWPQMACLVPTPEDEFDWEGD-LPLKYPQ 236 (805)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~-------~~~--------~~~~~~~~~~v~~~~~~~~w~~~-~~~~~~~ 236 (805)
.|..|++|++.++++||||+++..+..++.. .+. ........++|.+ ..|+|+++ .++..+|
T Consensus 76 ~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d--~~~~w~~~~~~p~~~~ 153 (688)
T TIGR02100 76 DPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD--PDFDWGGDEQRPRTPW 153 (688)
T ss_pred CCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC--CCCCCCCcccCCCCCc
Confidence 8899999999999999999999765332110 000 0000012345544 35999977 5556689
Q ss_pred CCcEEEEEeeccccccCCC-CCCCCcChhhhccc--hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcc
Q 003653 237 RDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (805)
Q Consensus 237 ~~~vIYei~v~~Ft~~~~s-~~~~~G~~~g~~~~--L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (805)
+++|||||||++|+...++ ....+|||+||+++ |+|||+||||+||||||+++.+..... .....+||||+|
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~-----~~~~~~ywGYd~ 228 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL-----EKGLRNYWGYNT 228 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCcccccc-----ccCCCCccCcCc
Confidence 9999999999999985433 34578999999996 999999999999999999986432110 011245799999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCC--CCc
Q 003653 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK--GEF 391 (805)
Q Consensus 314 ~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~--g~~ 391 (805)
.+||+|+++||++ ++++|||+||++||++||+|||||||||++.++..++..++++.++..||+..++ +.+
T Consensus 229 ~~y~a~d~~y~~~-------g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~ 301 (688)
T TIGR02100 229 LGFFAPEPRYLAS-------GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYY 301 (688)
T ss_pred ccccccChhhcCC-------CCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCcee
Confidence 9999999999873 3699999999999999999999999999998887777788899998899988765 678
Q ss_pred cccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHH
Q 003653 392 YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID 471 (805)
Q Consensus 392 ~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 471 (805)
.++++|++++|+++|+||++|+++++||+++|||||||||+|+.|.+...-+. ...++++
T Consensus 302 ~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~--------------------~~~~~~~ 361 (688)
T TIGR02100 302 INDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFD--------------------MLSGFFT 361 (688)
T ss_pred cCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCc--------------------ccHHHHH
Confidence 89999999999999999999999999999999999999999999975321000 0235888
Q ss_pred HHhcCCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCC
Q 003653 472 LISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPW 550 (805)
Q Consensus 472 ~i~~d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~ 550 (805)
+|+.++++++++||||.|+.+ +.++.+.|+. .+++||+.|++.+|.|++|+.+...+|+.+++++...|......|.
T Consensus 362 ~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~ 439 (688)
T TIGR02100 362 AIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPW 439 (688)
T ss_pred HHHhCcccCCeEEEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcC
Confidence 999999999999999999977 5677777764 5799999999999999999988999999999999888876556789
Q ss_pred ceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 003653 551 NSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMIS 630 (805)
Q Consensus 551 ~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy 630 (805)
++||||++||++||+|+++++.|||+++|++|+||.++|+|||||.||++....+..+|++++|+++++|||+||+||||
T Consensus 440 ~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~ 519 (688)
T TIGR02100 440 ASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLL 519 (688)
T ss_pred EEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCc-------cceee---cCC
Q 003653 631 MGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA-------DRLQW---HGH 700 (805)
Q Consensus 631 ~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~-------~~i~~---~~~ 700 (805)
||||+|+++.|++|+||+++++++|+|++...+ .++++|+|+||+|||+||+|+.+++... ++|+| +|.
T Consensus 520 ~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~-~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~ 598 (688)
T TIGR02100 520 AGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGD-DELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGE 598 (688)
T ss_pred ecHhhccCCCCCCCCccCCCcccccCccccccc-HHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCC
Confidence 999999999999999999999999999977666 8999999999999999999999987643 56899 888
Q ss_pred CCCCCCCCC-CCcEEEEEEEcCC-------CCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhh
Q 003653 701 APGLPDWSD-KSRFVAFTLIDSV-------KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKE 772 (805)
Q Consensus 701 ~~~~~~~~~-~~~vlaf~R~~~~-------~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~ 772 (805)
.+..++|.. ..++++|.+.... .+.++|++|.+.+++++.||..+ ..|.++++|....+..+. .
T Consensus 599 ~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~-~~w~~~~dt~~~~~~~~~--~----- 670 (688)
T TIGR02100 599 PMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG-GRWELVLDTADEEAPGIH--L----- 670 (688)
T ss_pred cCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC-CcEEEEecCCCCCCcccc--c-----
Confidence 888888976 3699999987532 14699999999999999999743 589999999654322210 0
Q ss_pred hhhhhccCCCCceeEEeeCCeEEEEEe
Q 003653 773 IAIKQYAPFLDANLYPMLSYSSIILLL 799 (805)
Q Consensus 773 ~~~~~~~~~~~~~~~~v~~~s~~vl~~ 799 (805)
.....+.|+|+|++||+.
T Consensus 671 ---------~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 671 ---------DAGQEAELPARSVLLLRR 688 (688)
T ss_pred ---------cCCCEEEEcCCEEEEEeC
Confidence 123579999999999973
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.5e-111 Score=981.88 Aligned_cols=638 Identities=38% Similarity=0.702 Sum_probs=541.2
Q ss_pred ccCCCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEc
Q 003653 90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (805)
Q Consensus 90 ~~~g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~ 169 (805)
+..|.+.||||++.++||+|+||||+|++|+|+||+..+ . ...++|. .+++|+|+++|+++.+|++|+|+|+
T Consensus 4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~gvW~~~v~~~~~G~~Y~yrv~ 75 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG----Q-EQRYDLP---ARSGDIWHGYLPGARPGLRYGYRVH 75 (658)
T ss_pred cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC----C-eeeEeee---eccCCEEEEEECCCCCCCEEEEEEc
Confidence 457899999999999999999999999999999997532 1 2356774 4578999999999999999999999
Q ss_pred CccCCCCCccccCcccccCcccceeeeccccCCC------CCC--CCCCCcceecccCCCCCCCCCCCCCCCCCCCCcEE
Q 003653 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL------GPD--ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLII 241 (805)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~------~~~--~~~~~~~~~~v~~~~~~~~w~~~~~~~~~~~~~vI 241 (805)
|.+.|+.|++|++.++++||||+++..+..++.. .+. ....-...++|.+ +.|+|+++.++..+++++||
T Consensus 76 g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~W~~~~~p~~~~~~~vI 153 (658)
T PRK03705 76 GPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD--DHYDWEDDAPPRTPWGSTVI 153 (658)
T ss_pred cccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec--CCCCCCCCCCCCCCccccEE
Confidence 9888999999999999999999999764321110 000 0000012344443 46999998888889999999
Q ss_pred EEEeeccccc-cCCCCCCCCcChhhhcc--chhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccC
Q 003653 242 YEVHVRGFTR-HESSKTEHPGTYLGVVE--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (805)
Q Consensus 242 Yei~v~~Ft~-~~~s~~~~~G~~~g~~~--~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~ 318 (805)
||+|||+||. +..++...+|||+|+++ +|+|||+||||+||||||+++.+..... .....+||||+|.+||+
T Consensus 154 YE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~-----~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 154 YEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQ-----RMGLSNYWGYNPLAMFA 228 (658)
T ss_pred EEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCccccc-----ccccccccCcccccccc
Confidence 9999999997 44455678999999997 4999999999999999999986532110 01123679999999999
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCc
Q 003653 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCG 398 (805)
Q Consensus 319 ~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~ 398 (805)
|+++|||++. .+++|||+||++||++||+||||||||||+..+..++.+++++.++..||..++.|.+.++++|+
T Consensus 229 ~d~~ygt~~~-----~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g 303 (658)
T PRK03705 229 LDPAYASGPE-----TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCG 303 (658)
T ss_pred cccccCCCCc-----chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCcc
Confidence 9999998643 35899999999999999999999999999987666777788899999999988889999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCC
Q 003653 399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPI 478 (805)
Q Consensus 399 ~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~ 478 (805)
++||+++|+||++|+++++||+++|||||||||+|++|.+...||.. .+++++++.+++
T Consensus 304 ~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~---------------------~~~~~ai~~d~v 362 (658)
T PRK03705 304 NTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQD---------------------APLFTAIQNDPV 362 (658)
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchh---------------------hHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999875555543 347888999999
Q ss_pred CCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecc
Q 003653 479 LRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 557 (805)
Q Consensus 479 ~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~ 557 (805)
+++++||||.|+.+ +.++++.++. .+++||+.|++.+|.|+.+..+...+++.+++++...|....+.|.++||||+
T Consensus 363 l~~~~ligE~Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~ 440 (658)
T PRK03705 363 LSQVKLIAEPWDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVT 440 (658)
T ss_pred ccceEEEEecccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEE
Confidence 99999999999987 5788888874 67999999999999999988888899999999998888766678999999999
Q ss_pred cCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccC
Q 003653 558 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 637 (805)
Q Consensus 558 nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~ 637 (805)
+||++||+|+++|+.|||.++||.|+||.++|+|||||.||++....+.++|++++|+++++||++||+||||||||+|+
T Consensus 441 ~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~gr 520 (658)
T PRK03705 441 AHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGH 520 (658)
T ss_pred eCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCC--ccceeec---CCCCCCCCCCCCCc
Q 003653 638 TKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT--ADRLQWH---GHAPGLPDWSDKSR 712 (805)
Q Consensus 638 ~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~--~~~i~~~---~~~~~~~~~~~~~~ 712 (805)
||.|++|+||+++++++|+|+... .++++|+|.||+|||+||+|+..++.. ...|.|. |..+....|.....
T Consensus 521 tq~G~nN~y~~~~~i~~~dW~~~~---~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~ 597 (658)
T PRK03705 521 SQHGNNNAYCQDNALTWLDWSQAD---RGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPK 597 (658)
T ss_pred CCCCCCCCccCCCCccccccchhh---hHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcce
Confidence 999999999999999999999653 799999999999999999999988732 2468885 44455667777677
Q ss_pred EEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCC
Q 003653 713 FVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSY 792 (805)
Q Consensus 713 vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 792 (805)
+++|... +.++|++|.+.++++|+||. ..|++++++... . + + .....+.|+++
T Consensus 598 ~~~~~~~----~~~~v~~N~~~~~~~~~lp~---~~w~~~~~~~~~-~-~------~------------~~~~~~~~~~~ 650 (658)
T PRK03705 598 QLQILLS----DRWLIAINATLEVTEIVLPE---GEWHAIPPFAGE-D-N------P------------VITAVWHGPAH 650 (658)
T ss_pred EEEEEEC----CCEEEEECCCCCCeEEECCC---cceEEEEccCCC-c-c------c------------ccCceeeecCc
Confidence 8888764 45999999999999999996 379999643221 0 0 0 11356789999
Q ss_pred eEEEEEeC
Q 003653 793 SSIILLLS 800 (805)
Q Consensus 793 s~~vl~~~ 800 (805)
|++||..+
T Consensus 651 ~~~~~~~~ 658 (658)
T PRK03705 651 GVCVFQRQ 658 (658)
T ss_pred EEEEEecC
Confidence 99998753
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-108 Score=946.58 Aligned_cols=656 Identities=44% Similarity=0.792 Sum_probs=568.2
Q ss_pred ccccCCCCCCCCeEEe---CCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCcee
Q 003653 88 FQVSKGYPTPFGATLR---DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (805)
Q Consensus 88 ~~~~~g~~~plGa~~~---~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y 164 (805)
.....|.+.||||++. +.|++|++++.+|++|+|||++... .......++++ .+.|.+|++.+|+...++.|
T Consensus 10 ~~~~~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~--~~~~~~~~~~~---~~~G~iw~~~~p~~~~g~~y 84 (697)
T COG1523 10 MTLQPGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAG--NTEEGRLYPYD---GELGAIWHLWLPGAKPGQVY 84 (697)
T ss_pred eeeccCCcccccceeeeccCcceEEeeeccccceEEEEecCccc--ccccccccccC---CccccEEEEEcCCCceeeEE
Confidence 5667899999999984 4999999999999999999997532 11111225553 46778999999999999999
Q ss_pred eEEEcCccCCCCCccccCcccccCcccceeeeccccCC--C------------CCCC-CCCCcceecccCCCCCCCCCCC
Q 003653 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV--L------------GPDE-NCWPQMACLVPTPEDEFDWEGD 229 (805)
Q Consensus 165 ~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~--~------------~~~~-~~~~~~~~~v~~~~~~~~w~~~ 229 (805)
.|+++|.+.|..|+++++.++..||||+++.+...++. . .++. ...+...+++.. ..|+|+.+
T Consensus 85 ~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~--~~~~w~~~ 162 (697)
T COG1523 85 GYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVID--PLFDWEND 162 (697)
T ss_pred EEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEec--cccccccC
Confidence 99999999999999999999999999999987764441 1 0001 111223344433 23999999
Q ss_pred CCCCCCCCCcEEEEEeeccccc-cCCCCCCCCcChhhhccc--hhHHHHcCCceEEECcccccCcccccccCCcCCCCCc
Q 003653 230 LPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKV 306 (805)
Q Consensus 230 ~~~~~~~~~~vIYei~v~~Ft~-~~~s~~~~~G~~~g~~~~--L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~ 306 (805)
.++..||+++||||+|||+||. ++......+|||.|++++ |+|||+||||||+||||+++....+.. .....
T Consensus 163 ~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~-----~~gl~ 237 (697)
T COG1523 163 KPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLD-----KSGLN 237 (697)
T ss_pred CCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEecccccc-----ccccc
Confidence 8888899999999999999994 555666789999999999 999999999999999999987654322 23356
Q ss_pred CccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeC
Q 003653 307 NFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA 386 (805)
Q Consensus 307 ~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~ 386 (805)
|||||+|.+||+|+++|.++|. +..++.|||.||+++|++||+||||||||||++++..++.++|+++++.+||+.+
T Consensus 238 n~WGYdP~~fFAp~~~Yss~p~---p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~ 314 (697)
T COG1523 238 NNWGYDPLNFFAPEGRYASNPE---PATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLD 314 (697)
T ss_pred cccCCCcccccCCCccccCCCC---cchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEEC
Confidence 7899999999999999999876 3457999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCC
Q 003653 387 PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS 466 (805)
Q Consensus 387 ~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~ 466 (805)
++|.+.|++||||++|+++|+||++|+|+|+||++||||||||||+|+.+.+++. .....
T Consensus 315 ~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~--------------------~~~~~ 374 (697)
T COG1523 315 PDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM--------------------LFDIN 374 (697)
T ss_pred CCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccc--------------------ccccC
Confidence 9999999999999999999999999999999999999999999999999987642 01123
Q ss_pred hHHHHHHhcCCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCC
Q 003653 467 PPLIDLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGG 545 (805)
Q Consensus 467 ~~~~~~i~~d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~ 545 (805)
.+++.++..+|++.++++|||.|+.+ +.|++|.||....|++||+.|++.+|.|++|+.+..+.|+.++.|+.+.|...
T Consensus 375 ~~l~~~~~~~p~l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~ 454 (697)
T COG1523 375 ANLFLAGEGDPVLSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRN 454 (697)
T ss_pred cchhhhccCCccccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhcc
Confidence 45888999999999999999999988 79999999966689999999999999999999999999999999999999888
Q ss_pred CCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC
Q 003653 546 GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 625 (805)
Q Consensus 546 ~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pG 625 (805)
++.|.++||||++||++||+|+++|+.|||.++||.|+||.++|++||||.++++..+.+...|.++.+++++.||+++|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCc----ccee---ec
Q 003653 626 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA----DRLQ---WH 698 (805)
Q Consensus 626 iP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~----~~i~---~~ 698 (805)
+|||-+|||+|+++.||+|+||++++++|++|+. +.. .++.+|++.||+|||+|++|+...+... .+|. |+
T Consensus 535 ~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~-~~~-~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~ 612 (697)
T COG1523 535 TPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWST-EAN-NDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWN 612 (697)
T ss_pred CcccccccccccccccccccccCCcccceeccCc-ccc-HHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccC
Confidence 9999999999999999999999999999999993 233 8999999999999999999999887764 5677 46
Q ss_pred CCCCCCCCCCCC-CcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhh
Q 003653 699 GHAPGLPDWSDK-SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQ 777 (805)
Q Consensus 699 ~~~~~~~~~~~~-~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~ 777 (805)
|......+|... ...+++...+. .++++|++|...+++.+.||... .+|..++++.......
T Consensus 613 g~~~~~~~w~~~~~~~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~-~~~~~~~~~~~~~~~~--------------- 675 (697)
T COG1523 613 GIPLTQDDWNNGFTGALAVVLDGD-KERLLVLINATAEPVEFELPEDE-GKWAGLVDTSTPPGFD--------------- 675 (697)
T ss_pred CeeechhcccCCCCceEEEEecCC-CccEEEEecCCccccceeccccc-CcceeeecccCCCCcc---------------
Confidence 676777778776 77888887654 37899999999999999999854 5799999886543211
Q ss_pred ccCCCCceeEEeeCCeEEEEEeCCCC
Q 003653 778 YAPFLDANLYPMLSYSSIILLLSPDE 803 (805)
Q Consensus 778 ~~~~~~~~~~~v~~~s~~vl~~~~~~ 803 (805)
..++++++.|+.||...+++
T Consensus 676 ------~~~~~~~~~s~~vl~~~~~~ 695 (697)
T COG1523 676 ------IREVSLPGRSVLVLTRRSEV 695 (697)
T ss_pred ------cceeecCCcEEEEEeecccc
Confidence 11589999999999977654
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.1e-98 Score=926.15 Aligned_cols=606 Identities=38% Similarity=0.674 Sum_probs=514.7
Q ss_pred ccCCCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEc
Q 003653 90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (805)
Q Consensus 90 ~~~g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~ 169 (805)
+..|++.||||++.++||+|+||||+|++|+||||+..+ .....+++|. .+++++|+++|++..+|++|+|+++
T Consensus 8 ~~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~---~~~~~~~~l~---~~~g~vW~~~i~~~~~g~~Ygyrv~ 81 (1221)
T PRK14510 8 VSPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWG---VREEARIKLP---GRTGDVWHGFIVGVGPGARYGNRQE 81 (1221)
T ss_pred cCCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEECCC---CCeeEEEECC---CCcCCEEEEEEccCCCCcEEEEEec
Confidence 456899999999999999999999999999999997532 1223456763 4678999999999999999999999
Q ss_pred CccCCCCCccccCcccccCcccceeeeccccCC-CCCCCC----------CCCcceecccCCCCCCCCCCCCCCCCCCCC
Q 003653 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV-LGPDEN----------CWPQMACLVPTPEDEFDWEGDLPLKYPQRD 238 (805)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~-~~~~~~----------~~~~~~~~v~~~~~~~~w~~~~~~~~~~~~ 238 (805)
|...|+.|+++++.++++||||+++.....+.. +.+.+. ..-...+++. +.|+|+++.++..+|++
T Consensus 82 g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~---~~~~W~~~~~~~~~~~d 158 (1221)
T PRK14510 82 GPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVP---TPFTWAPRSPLHGDWDD 158 (1221)
T ss_pred cCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceee---cccccCCCCCCCCCccc
Confidence 988889999999999999999999976533211 111100 0000112222 26999988888889999
Q ss_pred cEEEEEeeccccc-cCCCCCCCCcChhhhc--cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccc
Q 003653 239 LIIYEVHVRGFTR-HESSKTEHPGTYLGVV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (805)
Q Consensus 239 ~vIYei~v~~Ft~-~~~s~~~~~G~~~g~~--~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~ 315 (805)
+||||+||++|+. ++..+.+.+|+|+++. ++|+|||+||||+||||||+++.+.... ......+||||++.+
T Consensus 159 ~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~-----~~~g~~~yWGY~~~~ 233 (1221)
T PRK14510 159 SPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHL-----PQLGLSNYWGYNTVA 233 (1221)
T ss_pred CeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCccccc-----ccccCcCcCCCCCCC
Confidence 9999999999997 4556677889999999 6699999999999999999997642211 011245789999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCC--CCCccc
Q 003653 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP--KGEFYN 393 (805)
Q Consensus 316 y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~--~g~~~~ 393 (805)
||+|+++||+ ++.+|||+||++||++||+||||||||||+.++..++.+++++.+++.||...+ .+.+.+
T Consensus 234 yfa~dp~yg~--------~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~ 305 (1221)
T PRK14510 234 FLAPDPRLAP--------GGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYEN 305 (1221)
T ss_pred CCCcChhhcc--------CcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccC
Confidence 9999999994 249999999999999999999999999999998888888899999999998764 356789
Q ss_pred cCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccC-CCccccccccCccccCcccccCCCCCChHHHHH
Q 003653 394 YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG-SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDL 472 (805)
Q Consensus 394 ~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~-~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 472 (805)
++||++.+|+++|+|+++|+++++||++ |||||||||+|+++.+. .+||..+ .+.+++
T Consensus 306 ~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~--------------------~~~l~a 364 (1221)
T PRK14510 306 WWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEF--------------------RQFLKA 364 (1221)
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHH--------------------HHHHHH
Confidence 9999999999999999999999999997 99999999999999543 2566542 235677
Q ss_pred HhcCCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCc
Q 003653 473 ISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWN 551 (805)
Q Consensus 473 i~~d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 551 (805)
+..++++.++++|||.|+.+ +.++.+.|+.+ +++||+.|++.+|.|++|+.+...+++.++.++...|+.....+..
T Consensus 365 i~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~ 442 (1221)
T PRK14510 365 MDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSR 442 (1221)
T ss_pred hCCCcCcccCcEEEecccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCccc
Confidence 88888889999999999976 56888888863 7899999999999999998888899999999999888766677899
Q ss_pred eeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEec
Q 003653 552 SINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISM 631 (805)
Q Consensus 552 ~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~ 631 (805)
+||||+|||++||.|+++|+.|||.+|||+|+||.++|.|||||.+|++....+..++.+++|++++++||+||||||||
T Consensus 443 ~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~ 522 (1221)
T PRK14510 443 SINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYY 522 (1221)
T ss_pred ceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCc--------cceeecC---C
Q 003653 632 GDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA--------DRLQWHG---H 700 (805)
Q Consensus 632 GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~--------~~i~~~~---~ 700 (805)
|||+|+++.||+|+||+++++++|+|+..+ +++++|+|+||+|||+||+|+.+++... .+|.|++ .
T Consensus 523 GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~---~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~ 599 (1221)
T PRK14510 523 GDEAGRSQNGNNNGYAQDNNRGTYPWGNED---EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGE 599 (1221)
T ss_pred chhcccccCCCCCCCCCCCccccCCccccc---HHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCC
Confidence 999999999999999999999999998753 6899999999999999999999998753 4788954 4
Q ss_pred CCCCCCCCCC-CcEEEEEEEcCC-----CCEEEEEEeCCCCcEEEEcCC
Q 003653 701 APGLPDWSDK-SRFVAFTLIDSV-----KGEIYVAFNASHLPVIISLPK 743 (805)
Q Consensus 701 ~~~~~~~~~~-~~vlaf~R~~~~-----~~~~~Vv~N~~~~~~~v~Lp~ 743 (805)
.+..++|.+. .+.+++...... ++.++|++|.+.++++|.||.
T Consensus 600 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 600 QNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred cCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 4555567553 677777665422 247999999999999999996
No 5
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=4.3e-89 Score=800.30 Aligned_cols=559 Identities=30% Similarity=0.506 Sum_probs=437.6
Q ss_pred CCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccC
Q 003653 94 YPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFS 173 (805)
Q Consensus 94 ~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~ 173 (805)
++.||||++.++||+|+||||+|++|+|++|...+ ...+...++|.+ ..+|+|+++|+++.+|.+|+|+|++.
T Consensus 8 ~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~--~~~~~~~~~m~~---~~~gvw~~~i~~~~~g~~Y~y~v~~~-- 80 (605)
T TIGR02104 8 YDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGE--DGEPYKVVKMKR---GENGVWSAVLEGDLHGYFYTYQVCIN-- 80 (605)
T ss_pred CCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCC--CCccceEEeccc---CCCCEEEEEECCCCCCCEEEEEEEcC--
Confidence 33489999999999999999999999999987532 112334678854 56799999999999999999999852
Q ss_pred CCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCC--CCCCCCCCCC-CCCCCCCCcEEEEEeecccc
Q 003653 174 PQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEFDWEGDL-PLKYPQRDLIIYEVHVRGFT 250 (805)
Q Consensus 174 ~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~w~~~~-~~~~~~~~~vIYei~v~~Ft 250 (805)
|. ..+++||||+++..++..+ +|.+. ...++|+.+. ++..+++++||||+|||+|+
T Consensus 81 ---~~----~~~~~DPya~~~~~~~~~s--------------~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft 139 (605)
T TIGR02104 81 ---GK----WRETVDPYAKAVTVNGKRG--------------AVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFS 139 (605)
T ss_pred ---CC----eEEEcCCCcceeccCCCcE--------------EEEcccccCccCcccccCCCCCChhHcEEEEEecchhc
Confidence 11 2468999999986543322 23221 2356888776 66778899999999999999
Q ss_pred ccCCCCCCCCcChhhhccc-----------hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCC
Q 003653 251 RHESSKTEHPGTYLGVVEK-----------LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSP 319 (805)
Q Consensus 251 ~~~~s~~~~~G~~~g~~~~-----------L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~ 319 (805)
.+++++...+|||.|++++ |+|||+||||+||||||+++.+.+... +. ...+|||++.+||+|
T Consensus 140 ~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~-----~~-~~~~wGY~~~~y~~~ 213 (605)
T TIGR02104 140 IHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEED-----PN-NAYNWGYDPLNYNVP 213 (605)
T ss_pred cCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCccccccccccc-----CC-CCCCCCCCCccCCCc
Confidence 9888877779999999987 999999999999999999987532211 11 112499999999999
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCcc
Q 003653 320 MISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGN 399 (805)
Q Consensus 320 ~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~ 399 (805)
+++||++|.. +.++++|||+||++||++||+||||||+||++.... ..|++..+.+||+.++.|.+.++++|++
T Consensus 214 ~~~y~~~p~~--~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~----~~f~~~~~~~~~~~~~~g~~~~~~g~~~ 287 (605)
T TIGR02104 214 EGSYSTNPYD--PATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE----SPFEKTVPGYYYRYNEDGTLSNGTGVGN 287 (605)
T ss_pred ChhhhcCCCc--cchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC----CcccCCCCCeeEEECCCCCccCCCcccC
Confidence 9999997754 345689999999999999999999999999975421 2466667777788788888889999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCC
Q 003653 400 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPIL 479 (805)
Q Consensus 400 ~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~ 479 (805)
++|+++|+||++|++++++|+++|||||||||+|++++. +||.. +.++++ +..
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~--~~~~~-----------------------~~~~~~--~~~ 340 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDI--ETMNE-----------------------IRKALN--KID 340 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCH--HHHHH-----------------------HHHHHH--hhC
Confidence 999999999999999999999999999999999988864 34443 334443 356
Q ss_pred CCceeeeeecCCCCcccc------cccCCCCcccccchhHHHHHH---------HHHhCCCCcHHHHHHHHhCCCCcc--
Q 003653 480 RGVKLIAEAWDTGGLYQV------GIFPHWGIWSEWNGKYRDIVR---------QFIKGTDGFAGAFAECLCGSPNLY-- 542 (805)
Q Consensus 480 ~~~~ligE~w~~~~~~~~------~~~~~~~~~~~~n~~f~~~lr---------~~~~g~~~~~~~~~~~l~~~~~~~-- 542 (805)
++++||||.|+.+..... .+......++.||+.|++.++ .|++|..+....++..+.++...+
T Consensus 341 p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~ 420 (605)
T TIGR02104 341 PNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAV 420 (605)
T ss_pred CCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhccc
Confidence 799999999987632111 111122346889999999998 455555455667777777764433
Q ss_pred CCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 003653 543 QGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMV 622 (805)
Q Consensus 543 ~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt 622 (805)
......|.++|||++|||+.|+.|++.+..+ +. ....+.+++|++++++||
T Consensus 421 ~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~------~~-----------------------~~~~~~~r~rla~alllt 471 (605)
T TIGR02104 421 KPSALDPSQSINYVECHDNHTLWDKLSLANP------DE-----------------------TEEQLKKRQKLATAILLL 471 (605)
T ss_pred ccccCChhheEEEEEecCCCCHHHHHHhhCC------CC-----------------------CHHHHHHHHHHHHHHHHH
Confidence 1233578899999999999999999875422 00 013457889999999999
Q ss_pred cCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCC
Q 003653 623 SQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAP 702 (805)
Q Consensus 623 ~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~ 702 (805)
+||+||||||||+|+++.+++|+||+++.+++|+|+..+.. .++++++|+||+|||++|+|+.+++.. +.|+....
T Consensus 472 s~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~~-~~~~~~~~~Li~lRk~~pal~~~~~~~---i~~~~~~~ 547 (605)
T TIGR02104 472 SQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKATF-KDDVNYIKGLIALRKAHPAFRLSSAED---IRKHLEFL 547 (605)
T ss_pred cCCCceeecchhhhccCCCCCCCccCCCcccccCccccccc-hHHHHHHHHHHHHHhhCccccCCChhh---hcceeEEc
Confidence 99999999999999999999999999999999999976655 789999999999999999999987643 44443321
Q ss_pred CCCCCCCCCcEEEEEEEcCCC----CEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCC
Q 003653 703 GLPDWSDKSRFVAFTLIDSVK----GEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKP 758 (805)
Q Consensus 703 ~~~~~~~~~~vlaf~R~~~~~----~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~ 758 (805)
. ...+++++|.|..... +.++|++|++.+++++.||.. +.|+.++++...
T Consensus 548 ~----~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~~--~~w~~~~~~~~~ 601 (605)
T TIGR02104 548 P----AEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPSD--GTWNVVVDNKNA 601 (605)
T ss_pred c----CCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCCC--CCEEEEECCCcC
Confidence 1 1246799999986432 479999999999999999852 489999998653
No 6
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=5.4e-88 Score=810.84 Aligned_cols=612 Identities=25% Similarity=0.399 Sum_probs=445.0
Q ss_pred CCCCCCeEEeCCe-EEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcC------CCCCceeeE
Q 003653 94 YPTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKDMLYGY 166 (805)
Q Consensus 94 ~~~plGa~~~~~~-~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~------~~~g~~Y~y 166 (805)
+..+|||++.++| ++|+||||+|++|+|+||+.++.. .....++|.+ +.+|+|+++|++ +++|.+|+|
T Consensus 315 y~g~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~--~~~~~~~m~~---~~~GvW~v~v~~~~~G~~d~~G~~Y~Y 389 (1111)
T TIGR02102 315 YDGKLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQD--KVVGTVELKK---GDRGVWEVQLTKENTGIDSLTGYYYHY 389 (1111)
T ss_pred cCCCCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCC--CceeeEeccc---CCCCEEEEEECCcccCcccCCCceEEE
Confidence 4458999998776 899999999999999999864321 2234678853 568999999985 568999999
Q ss_pred EEcCccCCCCCccccCcccccCcccceeeecc-ccCCCCCCCCCCCcceecccCC----CCCCCCCCCCCCCCCCCCcEE
Q 003653 167 KFDGKFSPQEGHYFDPTKIVLDPYAKAVISRA-QFGVLGPDENCWPQMACLVPTP----EDEFDWEGDLPLKYPQRDLII 241 (805)
Q Consensus 167 ~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~----~~~~~w~~~~~~~~~~~~~vI 241 (805)
+|++. ...++++||||+++.... ... ........+++.+. +..|+|.+ .+...+++++||
T Consensus 390 ~V~~~---------~~~~~~~DPYA~al~~~n~~~~-----~~~~~~~ks~vvD~~~~~p~~~~~~~-~~~~~~~~d~vI 454 (1111)
T TIGR02102 390 EITRG---------GDKVLALDPYAKSLAAWNDATS-----DDQIKVAKAAFVDPSSLGPQELDFAK-IENFKKREDAII 454 (1111)
T ss_pred EEECC---------CceEEEeChhheEEeccCcccc-----cccCCCCceEEEcCcccCcccccccc-ccccCCccceEE
Confidence 99853 234578999999996422 110 00000112333332 12477774 444456799999
Q ss_pred EEEeeccccccCCCCCC---CCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcC---CCC-CcCccCCccc
Q 003653 242 YEVHVRGFTRHESSKTE---HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVL---GDY-KVNFWGYSTI 314 (805)
Q Consensus 242 Yei~v~~Ft~~~~s~~~---~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~---~~~-~~~~wGY~~~ 314 (805)
||+|||+|+.+.+++.. ..|||+||+++|+|||+|||||||||||+++...++....... ... ...+|||+|.
T Consensus 455 YElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~ 534 (1111)
T TIGR02102 455 YEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQ 534 (1111)
T ss_pred EEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcC
Confidence 99999999976555543 4799999999999999999999999999987543321110000 000 1124999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcccc
Q 003653 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY 394 (805)
Q Consensus 315 ~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~ 394 (805)
+||+|+++||++|.++ ..+++|||+||++||++||+|||||||||++..+ .|+++++.+|++.+.+|...+.
T Consensus 535 ~yfape~~Ygtdp~dp--~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~------~f~~~~p~Yy~~~~~~G~~~~~ 606 (1111)
T TIGR02102 535 NYFALSGMYSEDPKDP--ELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY------IFEDLEPNYYHFMDADGTPRTS 606 (1111)
T ss_pred cCcccccccccCCcCc--cccHHHHHHHHHHHHHCCCEEEEecccccccccc------cccccCCCceEeeCCCCCcccc
Confidence 9999999999987653 4578999999999999999999999999998753 3566677666666667766543
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHh
Q 003653 395 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 474 (805)
Q Consensus 395 ~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~ 474 (805)
.|++++++++++||++|+++++||+++|||||||||+|++++. .+|.. +..++.
T Consensus 607 -~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~--~~~~~-----------------------~~~~l~ 660 (1111)
T TIGR02102 607 -FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDA--ASIEI-----------------------AYKEAK 660 (1111)
T ss_pred -cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCH--HHHHH-----------------------HHHHHH
Confidence 3468999999999999999999999999999999999987753 22221 222222
Q ss_pred cCCCCCCceeeeeecCCC---CcccccccCCCCcccccc---hhHHHHHHHHHhC-------------CCCcHHHHHHHH
Q 003653 475 NDPILRGVKLIAEAWDTG---GLYQVGIFPHWGIWSEWN---GKYRDIVRQFIKG-------------TDGFAGAFAECL 535 (805)
Q Consensus 475 ~d~~~~~~~ligE~w~~~---~~~~~~~~~~~~~~~~~n---~~f~~~lr~~~~g-------------~~~~~~~~~~~l 535 (805)
. ..|+++|+||.|+.. ..+....++. .+..|+ ..|++.+|++++| ..+....+...+
T Consensus 661 ~--~dP~~~liGE~W~~~~g~~~~~~~~~~~--~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i 736 (1111)
T TIGR02102 661 A--INPNIIMIGEGWRTYAGDEGDPVQAADQ--DWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI 736 (1111)
T ss_pred H--hCcCEEEEEecccccCCCCcccccccch--hhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh
Confidence 2 335999999999862 1222222221 112222 3555555555554 223345677778
Q ss_pred hCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 003653 536 CGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 615 (805)
Q Consensus 536 ~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~ 615 (805)
.+++..|. ...|.++||||+|||++||+|+++++.+++.++++++ ....++.|+
T Consensus 737 ~g~~~~~~--~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~------------------------~~~~~r~rl 790 (1111)
T TIGR02102 737 KAQPHNFE--ADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQ------------------------EEIHRRIRL 790 (1111)
T ss_pred cCCccccc--cCCcccEEEEEecCCCCchHhhhhhccccCcccccch------------------------HHHHHHHHH
Confidence 88765542 3578999999999999999999999988887766521 112466778
Q ss_pred HHHHHHhcCCceEEeccccccCCCCCCCC----------------------------------CCCCCCCcccccCCccc
Q 003653 616 FFLCLMVSQGVPMISMGDEYGHTKGGNNN----------------------------------TYCHDNDINYFRWDKKE 661 (805)
Q Consensus 616 a~alllt~pGiP~Iy~GdE~G~~~~g~~n----------------------------------~y~~d~~~~~~~W~~~~ 661 (805)
+++++||+|||||||+||||+++|.|++| +|++++++|+++|++..
T Consensus 791 a~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~ 870 (1111)
T TIGR02102 791 GNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKAT 870 (1111)
T ss_pred HHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccc
Confidence 88999999999999999999999999844 55557899999999886
Q ss_pred CC-----hhHHHHHHHHHHHHHhhCcCCCCCCCCCc-cceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCC
Q 003653 662 ES-----KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL 735 (805)
Q Consensus 662 ~~-----~~~l~~~~~~Li~lRk~~~aL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~ 735 (805)
.. ..++++|+|.||+|||++|+|+.+++..+ ..|.|+.. +..+.|...+.+++|...+..++.++|++|.+.+
T Consensus 871 ~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~-~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~ 949 (1111)
T TIGR02102 871 DADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITI-PGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDK 949 (1111)
T ss_pred cccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECC-CCCcccccCCcEEEEEEecCCCCeEEEEECCCCC
Confidence 53 15899999999999999999999987554 35777643 2223455668999999876655689999999999
Q ss_pred cEEEEcCCC-C-CCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEEeCC
Q 003653 736 PVIISLPKR-P-GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 736 ~~~v~Lp~~-~-g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 801 (805)
+++++||.. + ...|.++++..... .+.+... .+ .....+.++|+|+|++||....
T Consensus 950 ~~~~~lp~~~~~~~~~~v~~~~~~~g-~~~~~~~-~~---------~~~~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 950 ARTLTLGEDYAHLTVGEVVVDAEQAG-VTGIAEP-KG---------VELTAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred CEEEECCCCcccccceEEEEcccccC-ccccccc-cc---------ccccCCeEEEcCcEEEEEEecc
Confidence 999999973 2 34799999875432 1111110 00 0022468999999999999875
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=3.3e-88 Score=795.19 Aligned_cols=636 Identities=22% Similarity=0.344 Sum_probs=457.5
Q ss_pred ccccccccceeecccccccccccCCCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCC
Q 003653 69 ASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148 (805)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~ 148 (805)
+++...++|-|+-...|+..+.+.| +|||++.+++|+|+||||+|++|+|+||+..+ .......++|. ..+
T Consensus 189 ~~g~~~~at~vq~~~~lD~~y~y~~---~LGA~~~~~g~~F~VWAPtA~~V~L~lyd~~~--~~~~~~~~~m~----~~~ 259 (970)
T PLN02877 189 ADGKCTDATGLQLPGVLDDLFAYDG---PLGAHFSKDAVSLYLWAPTAQAVSLCLYDDPR--GKEPLEIVQLK----ESN 259 (970)
T ss_pred CCCCEEccccccchhhhhhhccCCC---CCcceEecCCEEEEEECCCCCEEEEEEecCCC--CccceEEeccc----CCC
Confidence 5666677777888888888665544 89999999999999999999999999997532 22233456774 568
Q ss_pred CEEEEEEcCCCCCceeeEEEcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCC
Q 003653 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEG 228 (805)
Q Consensus 149 gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~ 228 (805)
|+|+++++++.+|.+|+|+|+. +.|..|.. ...++.||||+++..++.++.+..... ....+.+|..
T Consensus 260 GVWsv~v~~~~~G~~Y~Y~V~v-~~p~~g~~--~~~~v~DPYA~als~ng~~S~vvDl~~----------~~~~p~gW~~ 326 (970)
T PLN02877 260 GVWSVEGPKSWEGCYYVYEVSV-YHPSTGKV--ETCYANDPYARGLSADGRRTLLVDLDS----------DDLKPEGWDN 326 (970)
T ss_pred CEEEEEeccCCCCCeeEEEEee-cccCCCcc--cccccCCccceEEecCCCceEEECCcc----------ccCCChhhhh
Confidence 9999999999999999999983 45555653 244689999999987655443321100 0113457875
Q ss_pred ---CCCCCCCCCCcEEEEEeeccccccCCC-CCCCCcChhhhccc-------hhHHHHcCCceEEECcccccCccccccc
Q 003653 229 ---DLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFSY 297 (805)
Q Consensus 229 ---~~~~~~~~~~~vIYei~v~~Ft~~~~s-~~~~~G~~~g~~~~-------L~yLk~LGvt~I~L~Pi~~~~~~~~~~~ 297 (805)
+.++..+++++||||+|||+|+.++++ ...++|+|.|++++ |+|||+||||||+|||++++.+.++...
T Consensus 327 ~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~ 406 (970)
T PLN02877 327 LAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKE 406 (970)
T ss_pred cccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccc
Confidence 234455679999999999999986544 45689999999987 5666666999999999999987543211
Q ss_pred C------------Cc---C--------CCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003653 298 N------------SV---L--------GDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 354 (805)
Q Consensus 298 ~------------~~---~--------~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~Vi 354 (805)
. ++ . .+...+||||+|.+||+|+++|+++|..+ .++.|||+||++||++||+||
T Consensus 407 ~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~---~RI~efk~mV~~lH~~GI~VI 483 (970)
T PLN02877 407 NWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGP---CRIIEFRKMVQALNRIGLRVV 483 (970)
T ss_pred cccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCc---chHHHHHHHHHHHHHCCCEEE
Confidence 0 00 0 01123679999999999999999987543 479999999999999999999
Q ss_pred EEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEcccc
Q 003653 355 MDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 355 lDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~ 434 (805)
|||||||++..+++.....++++.+.+||+.+++|.+.+ ++|+++.+.++++||++|+|+++||++||||||||||+|+
T Consensus 484 mDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~n-s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 484 LDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIEN-STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred EEECCccccCCCCcchhhcccCCCCCceEEECCCCCccc-CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 999999998877665556678888888888888888877 5677888999999999999999999999999999999999
Q ss_pred ccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcC--CC-CCCceeeeeecCCCCccccc--------ccCCC
Q 003653 435 IMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND--PI-LRGVKLIAEAWDTGGLYQVG--------IFPHW 503 (805)
Q Consensus 435 ~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d--~~-~~~~~ligE~w~~~~~~~~~--------~~~~~ 503 (805)
+++.+ .|..+ ...+++|..+ .+ .++++|+||.|+.+...... +....
T Consensus 563 ~i~~~--tm~~~--------------------~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~ 620 (970)
T PLN02877 563 HLMKR--TMVRA--------------------KDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGT 620 (970)
T ss_pred cccHH--HHHHH--------------------HHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCC
Confidence 99763 12220 1123334321 11 36799999999876421111 11111
Q ss_pred CcccccchhHHHHHHH---H-HhCCCCcH--------------------------HHHHHHHhCCCCc------------
Q 003653 504 GIWSEWNGKYRDIVRQ---F-IKGTDGFA--------------------------GAFAECLCGSPNL------------ 541 (805)
Q Consensus 504 ~~~~~~n~~f~~~lr~---~-~~g~~~~~--------------------------~~~~~~l~~~~~~------------ 541 (805)
..+.||+.+||.++. | -....|+. ..+...+.|+...
T Consensus 621 -gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~ 699 (970)
T PLN02877 621 -GIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVK 699 (970)
T ss_pred -ceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccc
Confidence 356778777777763 2 00001111 1122334444321
Q ss_pred ------cCC----CCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 003653 542 ------YQG----GGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRR 611 (805)
Q Consensus 542 ------~~~----~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~ 611 (805)
|.+ ....|.++|||+++||+.||+|.+.+....+. ..+.|.+
T Consensus 700 g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~----------------------------s~~~r~r 751 (970)
T PLN02877 700 GSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEI----------------------------SVDERCR 751 (970)
T ss_pred cccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCC----------------------------CHHHHHH
Confidence 111 22578999999999999999999875321000 1134567
Q ss_pred HHHHHHHHHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCccc-----------CC-----------------
Q 003653 612 QMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE-----------ES----------------- 663 (805)
Q Consensus 612 ~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~-----------~~----------------- 663 (805)
+.+++++++|++||||+|++|+||+|+|.++.|+|++++++|.+||+.+. ++
T Consensus 752 ~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~ 831 (970)
T PLN02877 752 INHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFK 831 (970)
T ss_pred HHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccc
Confidence 88899999999999999999999999999999999999999999999832 21
Q ss_pred -----hhHHHHHHHHHHHHHhhCcCCCCCCCCCc-cceeecCCCCCCCCCCCCCcEEEEEEEcCC------------CCE
Q 003653 664 -----KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV------------KGE 725 (805)
Q Consensus 664 -----~~~l~~~~~~Li~lRk~~~aL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~------------~~~ 725 (805)
-....+++|.||+|||++|+|+.++...+ ++|.|+...+ ...+++|+|...+.. .+.
T Consensus 832 p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~-----~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ 906 (970)
T PLN02877 832 PSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGP-----SSIPGVIVMSIEDGHEGVPGLSQLDPIYSR 906 (970)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCC-----CcCCCEEEEEEcCCCCccccccccccccCc
Confidence 03458899999999999999999986543 3466655421 224689999997743 146
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCce--EEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEEeC
Q 003653 726 IYVAFNASHLPVIISLPKRPGYRW--EPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 800 (805)
Q Consensus 726 ~~Vv~N~~~~~~~v~Lp~~~g~~w--~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~ 800 (805)
++|++|.+.+++++++|...+..+ ..|. ....+ ..+.+..-....++++|||+|++|||..
T Consensus 907 ivVv~Na~~~~~~~~~~~~~~~~~~l~~v~----~~~~d----------~~~~~~~~~~~~~~~tvp~~t~aVfv~~ 969 (970)
T PLN02877 907 IVVIFNARPTEVSFESPALKGRTLELHPVQ----VMSAD----------EVVKKSVYEASSGVFTVPPRTTAVFVEH 969 (970)
T ss_pred EEEEEcCCCccEEEecccccccceeecccc----ccccc----------ceeccceeeccCCeEEecCceEEEEEee
Confidence 999999999999999997532111 2211 00001 1111111113357999999999999973
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.3e-87 Score=793.91 Aligned_cols=634 Identities=23% Similarity=0.367 Sum_probs=464.5
Q ss_pred ccccccccceeecccccccccccCCCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCC
Q 003653 69 ASKSAELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148 (805)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~ 148 (805)
+++...++|-|+....|+..+.+.|...+|||++.+++|+|+||||+|++|+|+||... ++ ....++|.+ ...+
T Consensus 99 ~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~-~~---~~~~~~M~~--~~~~ 172 (898)
T TIGR02103 99 ANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSAS-KK---VETTLPMTR--DSTS 172 (898)
T ss_pred CCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCC-CC---ccceEeCcc--CCCC
Confidence 56777778889999999998888886677999999999999999999999999999753 22 235678853 2257
Q ss_pred CEEEEEEcCCCCCceeeEEEcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCC
Q 003653 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEG 228 (805)
Q Consensus 149 gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~ 228 (805)
|+|+++++++.+|.+|+|+|+ .+.|..|.+ ...+++||||+++..++.++++..... ....+.+|..
T Consensus 173 GVWsv~v~g~~~G~~Y~Y~V~-v~~p~~G~v--~~~~v~DPYA~als~n~~~S~VvDl~~----------~~~~p~~W~~ 239 (898)
T TIGR02103 173 GVWSAEGGSSWKGAYYRYEVT-VYHPSTGKV--ETYLVTDPYSVSLSANSEYSQVVDLND----------PALKPEGWDA 239 (898)
T ss_pred CEEEEEECcCCCCCEeEEEEE-EecCCCCeE--CCeEEeCcCcceEcCCCCCeEEeCCcc----------ccCCCcchhh
Confidence 999999999999999999998 344555643 245689999999987766654432110 0113467876
Q ss_pred CCCCC---CCCCCcEEEEEeeccccccCCCCC-CCCcChhhhccc-------hhHHHHcCCceEEECcccccCccccccc
Q 003653 229 DLPLK---YPQRDLIIYEVHVRGFTRHESSKT-EHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFSY 297 (805)
Q Consensus 229 ~~~~~---~~~~~~vIYei~v~~Ft~~~~s~~-~~~G~~~g~~~~-------L~yLk~LGvt~I~L~Pi~~~~~~~~~~~ 297 (805)
+..++ .+++++||||+|||+|+.++++.. ..+|+|.+++++ |.|||+||||||+|||+|++.++++...
T Consensus 240 ~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~ 319 (898)
T TIGR02103 240 LAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKE 319 (898)
T ss_pred cccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccc
Confidence 55322 368999999999999998766544 689999999987 5666677999999999999987543210
Q ss_pred C--------------CcCC----------------------------------CCCcCccCCccccccCCCCCCCCCCCC
Q 003653 298 N--------------SVLG----------------------------------DYKVNFWGYSTINYFSPMISYSSAGIR 329 (805)
Q Consensus 298 ~--------------~~~~----------------------------------~~~~~~wGY~~~~y~~~~~~ygt~~~~ 329 (805)
. ++.. +...+||||+|.+||+|+++|+++|.
T Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~- 398 (898)
T TIGR02103 320 KVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPE- 398 (898)
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCC-
Confidence 0 0000 00124699999999999999999874
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHH
Q 003653 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVR 409 (805)
Q Consensus 330 ~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr 409 (805)
+..++.|||+||++||++||+||||||||||+.++.... ..++...+.+|++.+.+|.+.++++| +++++++++||
T Consensus 399 --g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~-s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vr 474 (898)
T TIGR02103 399 --GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDR-SVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMA 474 (898)
T ss_pred --CchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCc-ccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHH
Confidence 345799999999999999999999999999998764332 33566666777777777888888777 57899999999
Q ss_pred HHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeec
Q 003653 410 QFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAW 489 (805)
Q Consensus 410 ~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w 489 (805)
++|+|++++|+++|||||||||+|++++. +||.. +.+++++ +.++++++||.|
T Consensus 475 k~iiDsl~~W~~ey~VDGFRfDlm~~~~~--~f~~~-----------------------~~~~l~~--i~pdi~l~GEgW 527 (898)
T TIGR02103 475 KLIVDSLVVWAKDYKVDGFRFDLMGHHPK--AQMLA-----------------------AREAIKA--LTPEIYFYGEGW 527 (898)
T ss_pred HHHHHHHHHHHHHcCCCEEEEechhhCCH--HHHHH-----------------------HHHHHHH--hCCCEEEEecCC
Confidence 99999999999999999999999999976 45554 3444443 456999999999
Q ss_pred CCCCccc------cc--ccCCCCcccccchhHHHHHHHH--HhC------CCCcH-------------------------
Q 003653 490 DTGGLYQ------VG--IFPHWGIWSEWNGKYRDIVRQF--IKG------TDGFA------------------------- 528 (805)
Q Consensus 490 ~~~~~~~------~~--~~~~~~~~~~~n~~f~~~lr~~--~~g------~~~~~------------------------- 528 (805)
+.+.... .. +.... ..+.||+.+|+.+|.- +.+ ..|+.
T Consensus 528 ~~~~~~~~~~~~~a~~~n~~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~ 606 (898)
T TIGR02103 528 DFGEVANNRRFINATQLNLAGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLA 606 (898)
T ss_pred CcccccchhhhhhhhccccCCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhH
Confidence 8763211 11 11111 3466777777777631 111 01111
Q ss_pred HHHHHHHhCCCCc-----------------cC----CCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCC
Q 003653 529 GAFAECLCGSPNL-----------------YQ----GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGET 587 (805)
Q Consensus 529 ~~~~~~l~~~~~~-----------------~~----~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~ 587 (805)
..+...+.|+... |. .....|.++|||+++||+.||+|.+.+....+.
T Consensus 607 d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~----------- 675 (898)
T TIGR02103 607 DLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAET----------- 675 (898)
T ss_pred HHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCC-----------
Confidence 1222334443311 11 112578899999999999999999875421000
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCC----
Q 003653 588 HNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEES---- 663 (805)
Q Consensus 588 ~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~---- 663 (805)
..+.|.++.+++++++|++||||||++|+||+|+|.+..|+|++++++|.++|+.....
T Consensus 676 -----------------~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~g 738 (898)
T TIGR02103 676 -----------------PSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVG 738 (898)
T ss_pred -----------------CHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccC
Confidence 01235677889999999999999999999999999999999999999999999886531
Q ss_pred -----------------------------hhHHHHHHHHHHHHHhhCcCCCCCCCCCc-cceeecCCCCCCCCCCCCCcE
Q 003653 664 -----------------------------KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRF 713 (805)
Q Consensus 664 -----------------------------~~~l~~~~~~Li~lRk~~~aL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~v 713 (805)
-..+.++++.||+||+++|+||.++...+ +.|.|+...+ +..+++
T Consensus 739 lp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~-----~~~~g~ 813 (898)
T TIGR02103 739 LPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGP-----DQIPGL 813 (898)
T ss_pred CCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCC-----cCCCCE
Confidence 15689999999999999999999986543 4466654321 223689
Q ss_pred EEEEEEcCC----------CCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCC
Q 003653 714 VAFTLIDSV----------KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLD 783 (805)
Q Consensus 714 laf~R~~~~----------~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (805)
|+|...+.. .+.++|++|.+.+.+++ +|...+..|+.+....... ...+... .-...
T Consensus 814 i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~~~~~~~l~~~~~~~~-d~~v~~~-----------~~~~~ 880 (898)
T TIGR02103 814 IVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPDFAGTGLELHAVQQASG-DESVAKS-----------VYSAA 880 (898)
T ss_pred EEEEEcCCccccccccccccCeEEEEEcCCCccEEE-ecccCCCcEEEEecccccC-ccccccc-----------eeecc
Confidence 999987641 25799999999999998 8876566798864432211 1111000 00023
Q ss_pred ceeEEeeCCeEEEEEeC
Q 003653 784 ANLYPMLSYSSIILLLS 800 (805)
Q Consensus 784 ~~~~~v~~~s~~vl~~~ 800 (805)
.++++|||+|++||+..
T Consensus 881 ~~~~~vp~~s~~V~~~~ 897 (898)
T TIGR02103 881 NGTFTVPAWTTAVFVLP 897 (898)
T ss_pred CCEEEEcCcEEEEEEec
Confidence 47899999999999974
No 9
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-79 Score=684.34 Aligned_cols=638 Identities=32% Similarity=0.484 Sum_probs=526.2
Q ss_pred CCCCCeEEeCCe-EEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC--CCCceeeEEEcCc
Q 003653 95 PTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGK 171 (805)
Q Consensus 95 ~~plGa~~~~~~-~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~--~~g~~Y~y~i~~~ 171 (805)
..+||++.++++ +.|..|||.|.+|.|+ +|+|.|... ...+.+ +.+.|+|+++++.. ..+..+.|.+.
T Consensus 102 y~~~g~h~~~d~~v~~~ewaP~a~~~s~~----gd~n~W~~~-~~~~~~--k~~~g~w~i~l~~~~~~s~~v~H~s~~-- 172 (757)
T KOG0470|consen 102 YEPLGTHRTPDGRVDFTEWAPLAEAVSLI----GDFNNWNPS-SNELKP--KDDLGVWEIDLPPKVNGSGAVPHGSVS-- 172 (757)
T ss_pred ccccceeccCCCceeeeeecccccccccc----cccCCCCCc-ccccCc--ccccceeEEecCcccCCCcccccccee--
Confidence 459999998888 9999999999999999 888888764 233332 34669999999843 44445444432
Q ss_pred cCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCC-CCCCCcEEEEEeecccc
Q 003653 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-YPQRDLIIYEVHVRGFT 250 (805)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~-~~~~~~vIYei~v~~Ft 250 (805)
.....+||++.+....+|...++.+.+++++.++..++..+++|..+.+.+ .|.++++|||+|||+|+
T Consensus 173 -----------~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS 241 (757)
T KOG0470|consen 173 -----------KIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFS 241 (757)
T ss_pred -----------EEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeecccc
Confidence 123568888888888778776666777788888888777789999777555 56669999999999999
Q ss_pred ccCCCCCCCCcChhhhccc-hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCC
Q 003653 251 RHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIR 329 (805)
Q Consensus 251 ~~~~s~~~~~G~~~g~~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~ 329 (805)
.++++....+| |+++++| |++||.||+|||+||||+|+.. .+++|||.+.+||+|.++|||.+.
T Consensus 242 ~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~-------------~~~s~GY~~~nFFapssrYgt~~s- 306 (757)
T KOG0470|consen 242 SHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGH-------------YYASWGYQVTNFFAPSSRYGTPES- 306 (757)
T ss_pred CCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhh-------------hhhccCcceeEeecccccccCCCc-
Confidence 99988777667 9999999 9999999999999999999842 345799999999999999999655
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHH
Q 003653 330 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVR 409 (805)
Q Consensus 330 ~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr 409 (805)
+ .++.|||.||++||..||.|+||||+||++. +...++..|+|+++..||+.++ .++++.+|++.+|+++++|+
T Consensus 307 ~---~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~--r~~h~~~~~r~fn~~~~~V~ 380 (757)
T KOG0470|consen 307 P---CRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP--RGYHNSWCSRLFNYNHPVVL 380 (757)
T ss_pred c---cchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC--cccccccccccccCCCHHHH
Confidence 3 3589999999999999999999999999998 4455688899999999999988 66788899999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHH-HHhcCCCCCCce-eeee
Q 003653 410 QFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID-LISNDPILRGVK-LIAE 487 (805)
Q Consensus 410 ~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~i~~d~~~~~~~-ligE 487 (805)
++|+++|+||+.||+|||||||.+..|-+.+..|..- |+........+.|+....++++. +|++|+++.... +|++
T Consensus 381 rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~--f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~ 458 (757)
T KOG0470|consen 381 RFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAG--FDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITD 458 (757)
T ss_pred HHHHHHHHHHHHheeccceEEcchhhhhhhccccccc--cCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEe
Confidence 9999999999999999999999999988766666541 33333333345677788888999 899999988888 9999
Q ss_pred ecCCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHH-HHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHH
Q 003653 488 AWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAG-AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD 566 (805)
Q Consensus 488 ~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d 566 (805)
.|+.++++..+.+|++..+++||..|+..++.+.++...... .++++++++...+..+.+.|+.+|||+++||+.++.|
T Consensus 459 ~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d 538 (757)
T KOG0470|consen 459 AEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGD 538 (757)
T ss_pred eeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCccccc
Confidence 999999999999999999999999999999999998766555 6889999998888888889999999999999999999
Q ss_pred HHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCCCC
Q 003653 567 LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 646 (805)
Q Consensus 567 ~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y 646 (805)
+++++.| +..++.+|+||.++...+..+++.+..++++-+..+++.+|+||+|||+|||+++.++.+.|
T Consensus 539 ~~T~af~-----------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~ 607 (757)
T KOG0470|consen 539 LVTIAFK-----------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRY 607 (757)
T ss_pred eeeecch-----------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcc
Confidence 8887654 34567899999999999999999988888888888899999999999999999999999999
Q ss_pred CCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCC---CCCcEEEEEEEcCCC
Q 003653 647 CHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWS---DKSRFVAFTLIDSVK 723 (805)
Q Consensus 647 ~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~---~~~~vlaf~R~~~~~ 723 (805)
+.++..+..+|.+.+....+++++.+.|+.||+++-.|-.........++|++.....+.+. ..+.+++|...+..+
T Consensus 608 ~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~~~s 687 (757)
T KOG0470|consen 608 GNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHDSNS 687 (757)
T ss_pred cCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEEEEecCCCC
Confidence 99999999999655544488999999999999998888766665556677766543322222 225667776665543
Q ss_pred -CEEEEEEeCCCCcEEEEcCCCC-CCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEE
Q 003653 724 -GEIYVAFNASHLPVIISLPKRP-GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 798 (805)
Q Consensus 724 -~~~~Vv~N~~~~~~~v~Lp~~~-g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 798 (805)
..+.|.+|.......+-+|..+ ++.|.+|.++....+.++...+.+.. ...|.+-++++++..
T Consensus 688 ~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~------------l~VY~~~~~a~vl~~ 752 (757)
T KOG0470|consen 688 YIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVS------------LQVYIPSRTATVLAL 752 (757)
T ss_pred CceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeee------------EEEEeccCcceEeee
Confidence 6899999999998888888866 78999999999988998888886631 345666666644443
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.9e-73 Score=655.56 Aligned_cols=473 Identities=27% Similarity=0.427 Sum_probs=346.9
Q ss_pred EEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCCCccccCcccc
Q 003653 107 VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIV 186 (805)
Q Consensus 107 ~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~ 186 (805)
|+|+||||+|++|+|+++. ..++|.+ ..+|+|+++|+++.+|++|+|+|+|. ..+
T Consensus 1 v~FrlwAP~A~~V~L~l~~----------~~~~m~k---~~~GvW~~~v~~~~~G~~Y~y~v~g~------------~~v 55 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG----------ALHAMQR---LGDGWFEITVPPVGPGDRYGYVLDDG------------TPV 55 (542)
T ss_pred CEEEEECCCCCEEEEEeCC----------CEEeCeE---CCCCEEEEEECCCCCCCEEEEEEeee------------EEe
Confidence 6899999999999999731 2567753 46799999999999999999999852 257
Q ss_pred cCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCcEEEEEeeccccccCCCCCCCCcChhhh
Q 003653 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGV 266 (805)
Q Consensus 187 ~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~~~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~ 266 (805)
+||||+++.. ++.+ .++|.+ .+.|+|+++.++..+++++||||+||++|+. .|||+|+
T Consensus 56 ~DPya~~~~~----~~~~---------~S~V~d-~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~--------~G~~~gi 113 (542)
T TIGR02402 56 PDPASRRQPD----GVHG---------PSQVVD-PDRYAWQDTGWRGRPLEEAVIYELHVGTFTP--------EGTFDAA 113 (542)
T ss_pred cCcccccccc----CCCC---------CeEEec-CcccCCCCccccCCCccccEEEEEEhhhcCC--------CCCHHHH
Confidence 8999998632 1111 234433 2469999988888889999999999999987 6999999
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
+++|+|||+||||+||||||++++. ..+|||++.+||+|+++||+ ++|||+||++|
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~--------------~~~~GY~~~~~~~~~~~~G~----------~~e~k~lV~~a 169 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPG--------------TRGWGYDGVLPYAPHNAYGG----------PDDLKALVDAA 169 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCC--------------CCCCCCCccCccccccccCC----------HHHHHHHHHHH
Confidence 9999999999999999999998753 13699999999999999997 89999999999
Q ss_pred HHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCH---HHHHHHHHHHHHHHHcC
Q 003653 347 HKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHP---VVRQFIVDCLRYWVTEM 423 (805)
Q Consensus 347 H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~---~vr~~i~d~l~~W~~e~ 423 (805)
|++||+||||+|+||++.++.... ... + ||... ..++||+++|+++| +||++|+++++||+++|
T Consensus 170 H~~Gi~VilD~V~NH~~~~~~~~~-----~~~-~-y~~~~------~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 170 HGLGLGVILDVVYNHFGPEGNYLP-----RYA-P-YFTDR------YSTPWGAAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred HHCCCEEEEEEccCCCCCcccccc-----ccC-c-cccCC------CCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999986543211 112 2 55321 13567889999999 99999999999999999
Q ss_pred ceeEEEEccccccccCC--CccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCC---ceeeeeecCCC-Ccccc
Q 003653 424 HVDGFRFDLASIMTRGS--SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRG---VKLIAEAWDTG-GLYQV 497 (805)
Q Consensus 424 gvDGfR~D~a~~l~~~~--~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~---~~ligE~w~~~-~~~~~ 497 (805)
||||||||+++.|.... .||.+ +.+.+++ +.++ ++||||.|... .....
T Consensus 237 ~iDGfR~D~~~~~~~~~~~~~l~~-----------------------~~~~~~~--~~p~~~~~~li~E~~~~~~~~~~~ 291 (542)
T TIGR02402 237 HFDGLRLDAVHAIADTSAKHILEE-----------------------LAREVHE--LAAELRPVHLIAESDLNDPSLVTP 291 (542)
T ss_pred CCcEEEEeCHHHhccccHHHHHHH-----------------------HHHHHHH--HCCCCceEEEEEecCCCCCccccc
Confidence 99999999999886421 24443 2333332 2234 89999987433 22211
Q ss_pred cccCCCCcccccchhHHHHHHHHHhCCC-Cc-------HHHHHHHHhCC------CCcc-------CCCCCCCCceeeec
Q 003653 498 GIFPHWGIWSEWNGKYRDIVRQFIKGTD-GF-------AGAFAECLCGS------PNLY-------QGGGRKPWNSINFV 556 (805)
Q Consensus 498 ~~~~~~~~~~~~n~~f~~~lr~~~~g~~-~~-------~~~~~~~l~~~------~~~~-------~~~~~~p~~~vnfv 556 (805)
......+++++||+.|++.++.+++|.. ++ ...++..+... ...+ +.....+.+.|||+
T Consensus 292 ~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl 371 (542)
T TIGR02402 292 REDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFI 371 (542)
T ss_pred ccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEc
Confidence 1112345789999999999999998753 22 23444444311 0001 00112457899999
Q ss_pred ccCCC---cchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 003653 557 CAHDG---FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 633 (805)
Q Consensus 557 ~nHD~---~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~Gd 633 (805)
+|||+ .++.+.+.. .+..++.++|++++||+||+|||||||
T Consensus 372 ~nHD~~gn~~~~~Rl~~------------------------------------~~~~~~~~la~alllt~pGiP~Iy~Gq 415 (542)
T TIGR02402 372 QNHDQIGNRALGERLSQ------------------------------------LLSPGSLKLAAALLLLSPYTPLLFMGE 415 (542)
T ss_pred cCcccccccchhhhhhh------------------------------------cCCHHHHHHHHHHHHHcCCCceeeccH
Confidence 99995 233332210 011356889999999999999999999
Q ss_pred cccCCCCC-------C-------------------------CCCCCCC-CCcccccCCcccC-ChhHHHHHHHHHHHHHh
Q 003653 634 EYGHTKGG-------N-------------------------NNTYCHD-NDINYFRWDKKEE-SKSDFFRFCCLLTKFRH 679 (805)
Q Consensus 634 E~G~~~~g-------~-------------------------~n~y~~d-~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk 679 (805)
|+|++++. + .++.+.. ..++.++|+..+. ...++++|||+||+|||
T Consensus 416 E~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk 495 (542)
T TIGR02402 416 EYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRR 495 (542)
T ss_pred hhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhc
Confidence 99999852 1 0111111 1358899988752 34789999999999999
Q ss_pred hCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEE
Q 003653 680 ECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVI 738 (805)
Q Consensus 680 ~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~ 738 (805)
++++|+.++...+. .. ...++++++|.. + +++++|++|++.++++
T Consensus 496 ~~~~l~~~~~~~~~---~~--------~~~~~~~~~~~~--~-~~~~~v~~N~~~~~~~ 540 (542)
T TIGR02402 496 ELPVLLLPGARALE---VV--------VDEDPGWVAVRF--G-RGELVLAANLSTSPVA 540 (542)
T ss_pred cCccccCCCcccce---ee--------ecCCCCEEEEEE--C-CCeEEEEEeCCCCCcC
Confidence 99999988754421 10 123467888873 3 3679999999987755
No 11
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=6.8e-72 Score=647.02 Aligned_cols=579 Identities=19% Similarity=0.310 Sum_probs=398.5
Q ss_pred CCCCeEEe----CCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCc
Q 003653 96 TPFGATLR----DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (805)
Q Consensus 96 ~plGa~~~----~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~ 171 (805)
..||||.. .+||+|+||||+|++|+|+ ++||.|.. ..+||.+ +.+|+|+++||++.+|.+|+|+|.+.
T Consensus 125 ~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVv----GDFN~Wdg-~~~pM~~---~~~GVWelfipg~~~G~~YKYeI~~~ 196 (730)
T PRK12568 125 RALGAQHVQVGEVPGVRFAVWAPHAQRVAVV----GDFNGWDV-RRHPMRQ---RIGGFWELFLPRVEAGARYKYAITAA 196 (730)
T ss_pred HhcCCeEeeECCCCcEEEEEECCCCCEEEEE----EecCCCCc-cceeccc---CCCCEEEEEECCCCCCCEEEEEEEcC
Confidence 36999975 4589999999999999999 56777754 4678853 47899999999999999999999753
Q ss_pred cCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCC-----CCCCCCCcEEEEEee
Q 003653 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLP-----LKYPQRDLIIYEVHV 246 (805)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~-----~~~~~~~~vIYei~v 246 (805)
+|.. ..+.||||+++..+. ..+++|.+ ...|+|+++.| +..+.++++|||+|+
T Consensus 197 ----~G~~----~~k~DPYA~~~e~~p-------------~~asvV~~-~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHv 254 (730)
T PRK12568 197 ----DGRV----LLKADPVARQTELPP-------------ATASVVPS-AAAFAWTDAAWMARRDPAAVPAPLSIYEVHA 254 (730)
T ss_pred ----CCeE----eecCCCcceEeecCC-------------CCCeEEcC-CCCCCCCChhhhhcccccCCCCCcEEEEEEh
Confidence 3432 246899999985432 12345543 24688887654 233568999999999
Q ss_pred ccccccCCCCCCCCcChhhhccc-hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCC
Q 003653 247 RGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (805)
Q Consensus 247 ~~Ft~~~~s~~~~~G~~~g~~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt 325 (805)
++|+.+.. ...++|.+++++ |+|||+||||+||||||++++. .++|||++.+||+|+++||+
T Consensus 255 gsf~~~~~---~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~--------------~~~wGY~~~~~~a~~~~~G~ 317 (730)
T PRK12568 255 ASWRRDGH---NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPF--------------GGSWGYQPLGLYAPTARHGS 317 (730)
T ss_pred HHhcCCCC---CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCC--------------CCCCCCCCCcCCccCcccCC
Confidence 99998532 236799999998 5999999999999999998652 13699999999999999997
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCcccee-eCC-CCCccccCCCccccCC
Q 003653 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAP-KGEFYNYSGCGNTFNC 403 (805)
Q Consensus 326 ~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~-~~~-~g~~~~~~g~~~~ln~ 403 (805)
++|||+||++||++||+||||+|+||++.+.. .+..|++ ..+|. .++ .|.+.+|.. -.+|+
T Consensus 318 ----------~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~--~l~~fdg---~~~Ye~~d~~~g~~~~W~~--~~~N~ 380 (730)
T PRK12568 318 ----------PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH--GLAQFDG---AALYEHADPREGMHRDWNT--LIYNY 380 (730)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEEEeccccCCcccc--ccccCCC---ccccccCCCcCCccCCCCC--eeccc
Confidence 89999999999999999999999999987642 1223333 33333 222 233333322 26899
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEccccccc-----cCCCccccccccCccccCcccccCCCCCChHHHHHHhc--C
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--D 476 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~-----~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--d 476 (805)
.+|+||++|+++++||+++|||||||+|++..|. +..+.|.+ +.+|... ++....|++.+.. .
T Consensus 381 ~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~p-n~~gg~e---------n~ea~~Fl~~ln~~v~ 450 (730)
T PRK12568 381 GRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVP-NAHGGRE---------NLEAVAFLRQLNREIA 450 (730)
T ss_pred CCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccc-cccCCcc---------ChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876552 22234543 3333211 1112235554432 1
Q ss_pred CCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeee
Q 003653 477 PILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINF 555 (805)
Q Consensus 477 ~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnf 555 (805)
...|++.+|||.+... +..........|++..||..+++.+..+++.+..........|..+- .| .......+
T Consensus 451 ~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~-~y-----~~~e~fvl 524 (730)
T PRK12568 451 SQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGL-VY-----AFSERFVL 524 (730)
T ss_pred HHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhh-hh-----hhhccEec
Confidence 2457999999975432 11111111234689999999999999998875433222222222111 11 01122336
Q ss_pred cccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccc
Q 003653 556 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEY 635 (805)
Q Consensus 556 v~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~ 635 (805)
..|||+.- .+|..+..- .+|. ...+.+++|++++++|+.||.||||||+||
T Consensus 525 p~SHDEvv-------hgk~sl~~k----------------mpGd------~~~k~a~lR~~~~~~~~~PGkkLlFmG~Ef 575 (730)
T PRK12568 525 PLSHDEVV-------HGTGGLLGQ----------------MPGD------DWRRFANLRAYLALMWAHPGDKLLFMGAEF 575 (730)
T ss_pred cCCCcccc-------cCchhhhhc----------------CCCC------HHHHHHHHHHHHHHHHhCCCcceeeCchhh
Confidence 78999842 111111100 0010 012467788999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEE
Q 003653 636 GHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFV 714 (805)
Q Consensus 636 G~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vl 714 (805)
|..+.-+. + ..++|...+. .++.+.+++|.|++||+++|||...++.. ..++|... -+.+.+|+
T Consensus 576 gq~~ew~~-----~---~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~-~gf~wi~~------~d~~~sv~ 640 (730)
T PRK12568 576 GQWADWNH-----D---QSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRA-DGFDWSVA------DDARNSVL 640 (730)
T ss_pred CCcccccC-----C---CCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCC-CCeEEEeC------CCCCCcEE
Confidence 98754332 2 3589998663 34789999999999999999998887654 34555322 23456899
Q ss_pred EEEEEcCC--CCEEEEEEeCCCCc---EEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEe
Q 003653 715 AFTLIDSV--KGEIYVAFNASHLP---VIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPM 789 (805)
Q Consensus 715 af~R~~~~--~~~~~Vv~N~~~~~---~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 789 (805)
+|.|...+ ++.++||+|++..+ ..+.+|. .+.|+++++|......+.-.+......+.-......+.+.+++|
T Consensus 641 af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~--~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~l 718 (730)
T PRK12568 641 AFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPR--AGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTL 718 (730)
T ss_pred EEEEecCCCCCCeEEEEECCCCCCccCeEECCCC--CCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEe
Confidence 99999754 35699999999865 4566665 46999999998754332211110000111112344567899999
Q ss_pred eCCeEEEEEeC
Q 003653 790 LSYSSIILLLS 800 (805)
Q Consensus 790 ~~~s~~vl~~~ 800 (805)
||+++++|...
T Consensus 719 ppl~~~~~~~~ 729 (730)
T PRK12568 719 PPLATIYLQAE 729 (730)
T ss_pred CCCEEEEEEEC
Confidence 99999999875
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.6e-72 Score=658.54 Aligned_cols=574 Identities=21% Similarity=0.341 Sum_probs=386.7
Q ss_pred CCCCeEEeCC----eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCc
Q 003653 96 TPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (805)
Q Consensus 96 ~plGa~~~~~----~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~ 171 (805)
.+|||++... +|+|+||||+|++|+|+ ++|++|.. ..++|.+ ..+|+|++++++..+|..|+|+|...
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~----gdfn~w~~-~~~~m~~---~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 96 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVV----GDFNDWRG-NAHPLVR---RESGVWEGFIPGAKEGQLYKYHISRQ 96 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEE----EecCCCCc-ccccccc---cCCCEEEEEeCCCCCCCEEEEEEECC
Confidence 4799999877 89999999999999999 57776653 3567753 36799999999999999999999632
Q ss_pred cCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCC------CCCCCcEEEEEe
Q 003653 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK------YPQRDLIIYEVH 245 (805)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~------~~~~~~vIYei~ 245 (805)
+|.. ..+.||||+++..+. ...++|.+ .+.|.|+++.+.. .+.++++|||||
T Consensus 97 ----~g~~----~~~~DPya~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~h 154 (633)
T PRK12313 97 ----DGYQ----VEKIDPFAFYFEARP-------------GTASIVWD-LPEYKWKDGLWLARRKRWNALDRPISIYEVH 154 (633)
T ss_pred ----CCeE----EecCCCceEEEecCC-------------CCceEECC-CcccCCCChhhhhccccCCCCCCCceEEEEe
Confidence 2322 246899999985431 12345544 3569999876531 234789999999
Q ss_pred eccccccCCCCCCCCcChhhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCC
Q 003653 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (805)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~yg 324 (805)
|++|+.++. ...|||++++++| +|||+||||+||||||++++. .++|||++.+||+|+++||
T Consensus 155 v~~f~~~~~---~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~--------------~~~~GY~~~~y~~i~~~~G 217 (633)
T PRK12313 155 LGSWKRNED---GRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPL--------------DGSWGYQLTGYFAPTSRYG 217 (633)
T ss_pred hhccccCCC---CCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCC--------------CCCCCCCCcCcCcCCCCCC
Confidence 999998642 3469999999995 999999999999999999752 2369999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCcccee-eCCCCCccccCCCccccCC
Q 003653 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAPKGEFYNYSGCGNTFNC 403 (805)
Q Consensus 325 t~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~-~~~~g~~~~~~g~~~~ln~ 403 (805)
| +++||+||++||++||+||||+|+||++.++.. ...|.+ ..+|. .++...+...++ ..+||+
T Consensus 218 t----------~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~w~-~~~~n~ 281 (633)
T PRK12313 218 T----------PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG--LAYFDG---TPLYEYQDPRRAENPDWG-ALNFDL 281 (633)
T ss_pred C----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc--ccccCC---CcceeecCCCCCcCCCCC-CcccCC
Confidence 7 899999999999999999999999999876432 112322 22322 222222222222 368999
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEcccccc-ccCCC---ccccccccCccccCcccccCCCCCChHHHHHHhc--CC
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM-TRGSS---LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DP 477 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l-~~~~~---~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--d~ 477 (805)
++|+||++|++++++|+++|||||||||++..+ ..+.. -|.. +.+|.. .......+++.+.. ..
T Consensus 282 ~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~-~~~~~~---------~~~~~~~fl~~~~~~v~~ 351 (633)
T PRK12313 282 GKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTP-NKYGGR---------ENLEAIYFLQKLNEVVYL 351 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCC-cccCCC---------CCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988654 22111 1221 111110 01111234444432 12
Q ss_pred CCCCceeeeeecCCCCcccc-cccCCCCcccccchhHHHHHHHHHhCCCCcHH----HHHHHHhCCCCccCCCCCCCCce
Q 003653 478 ILRGVKLIAEAWDTGGLYQV-GIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAG----AFAECLCGSPNLYQGGGRKPWNS 552 (805)
Q Consensus 478 ~~~~~~ligE~w~~~~~~~~-~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~----~~~~~l~~~~~~~~~~~~~p~~~ 552 (805)
..|++++|||.|........ ......++++.||..|.+.+..++.....+.. .+...+.. .+. ..
T Consensus 352 ~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------e~ 421 (633)
T PRK12313 352 EHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMY---AFS-------EN 421 (633)
T ss_pred HCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhh---hhh-------cc
Confidence 45689999998753321111 11123468899999998888887764321110 00001110 011 11
Q ss_pred eeecccCCCc-----chHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCce
Q 003653 553 INFVCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVP 627 (805)
Q Consensus 553 vnfv~nHD~~-----rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP 627 (805)
.+++.|||+. |+...+. |+ ......++|++++++||+||+|
T Consensus 422 ~~l~~sHD~~~~g~~~~~~~~~---------g~-------------------------~~~~~~~~r~~~~~~~t~pG~P 467 (633)
T PRK12313 422 FVLPFSHDEVVHGKKSLMHKMP---------GD-------------------------RWQQFANLRLLYTYMITHPGKK 467 (633)
T ss_pred cccCCCCcccccCCccHHHhcC---------CC-------------------------HHHHHHHHHHHHHHHHhCCCCc
Confidence 2467899984 4433221 00 0012456888999999999999
Q ss_pred EEeccccccCCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCC
Q 003653 628 MISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPD 706 (805)
Q Consensus 628 ~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~ 706 (805)
|||||+|+|+.+... ....++|+..+. ...++++|+|+||+||+++|+|+.+++.. ..++|...
T Consensus 468 lif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l~~------ 532 (633)
T PRK12313 468 LLFMGSEFGQFLEWK--------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWIDA------ 532 (633)
T ss_pred EeecccccccCccCC--------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEEEC------
Confidence 999999999976432 235799987543 24789999999999999999999876532 22333211
Q ss_pred CCCCCcEEEEEEEc-CCCCEEEEEEeCCCCcE---EEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCC
Q 003653 707 WSDKSRFVAFTLID-SVKGEIYVAFNASHLPV---IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFL 782 (805)
Q Consensus 707 ~~~~~~vlaf~R~~-~~~~~~~Vv~N~~~~~~---~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (805)
-..+++++||.|.. ..++.++||+|++..++ .+.+|. ++.|+.++++......+..........+.-.......
T Consensus 533 ~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~--~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~ 610 (633)
T PRK12313 533 DDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPV--AGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRP 610 (633)
T ss_pred cCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCC--CCeEEEEEcCCchhcCCCCcCCCCceeecccccCCCC
Confidence 11246799999987 23478999999998543 344553 4599999998765432211100000000001122234
Q ss_pred CceeEEeeCCeEEEEEeCCCC
Q 003653 783 DANLYPMLSYSSIILLLSPDE 803 (805)
Q Consensus 783 ~~~~~~v~~~s~~vl~~~~~~ 803 (805)
....+.|||+|++||..+++.
T Consensus 611 ~~~~i~ip~~s~~v~~~~~~~ 631 (633)
T PRK12313 611 QSLTLTLPPLGALVLKPKRRL 631 (633)
T ss_pred CEEEEEeCCCEEEEEEEcccc
Confidence 567899999999999998764
No 13
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-71 Score=647.61 Aligned_cols=572 Identities=21% Similarity=0.331 Sum_probs=390.1
Q ss_pred CCCeEEeCC----eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCcc
Q 003653 97 PFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (805)
Q Consensus 97 plGa~~~~~----~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~ 172 (805)
.||||..+. ||+|+||||+|++|+|+ ++||.|.. ..+||.+ ..+|+|+++|++..+|..|+|+|++.
T Consensus 26 ~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lv----gdfn~w~~-~~~pM~~---~~~GvW~~~vpg~~~g~~Yky~I~~~- 96 (639)
T PRK14706 26 LLGAHPATEGGVEGVRFAVWAPGAQHVSVV----GDFNDWNG-FDHPMQR---LDFGFWGAFVPGARPGQRYKFRVTGA- 96 (639)
T ss_pred hcCccCccCCCcccEEEEEECCCCCEEEEE----EecCCccc-ccccccc---cCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 699998653 79999999999999999 46666653 3567754 35699999999999999999999864
Q ss_pred CCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCC---C-CCCCcEEEEEeecc
Q 003653 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK---Y-PQRDLIIYEVHVRG 248 (805)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~---~-~~~~~vIYei~v~~ 248 (805)
+|.. ..+.||||+.+..+. ..+++|.+ ..|+|.++.+.. . ..++++|||+||++
T Consensus 97 ---~g~~----~~~~DPYa~~~~~~~-------------~~~svv~~--~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~ 154 (639)
T PRK14706 97 ---AGQT----VDKMDPYGSFFEVRP-------------NTASIIWE--DRFEWTDTRWMSSRTAGFDQPISIYEVHVGS 154 (639)
T ss_pred ---CCCE----EeccCcceEEEecCC-------------CCceEECC--CCCCCCCcccccccCCccCCCcEEEEEehhh
Confidence 3332 236899999985442 12345543 359999877642 1 23569999999999
Q ss_pred ccccCCCCCCCCcChhhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCC
Q 003653 249 FTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAG 327 (805)
Q Consensus 249 Ft~~~~s~~~~~G~~~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~ 327 (805)
|+.... ...|+|++++++| +|||+|||||||||||++++. .++|||++.+||+|+++||+
T Consensus 155 f~~~~~---g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~--------------~~~wGY~~~~~~~~~~~~g~-- 215 (639)
T PRK14706 155 WARRDD---GWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPF--------------DGSWGYQVTGYYAPTSRLGT-- 215 (639)
T ss_pred cccCCC---CCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCC--------------CCCCCcCcccccccccccCC--
Confidence 987421 2258999999997 999999999999999999642 24699999999999999997
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccce-eeCC-CCCccccCCCccccCCCC
Q 003653 328 IRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-MLAP-KGEFYNYSGCGNTFNCNH 405 (805)
Q Consensus 328 ~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy-~~~~-~g~~~~~~g~~~~ln~~~ 405 (805)
++|||+||++||++||+||||+|+||++.+... +..+ +.+.+| ..++ .|...+|.. ..+|+.+
T Consensus 216 --------~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~--l~~~---dg~~~y~~~~~~~g~~~~w~~--~~~~~~~ 280 (639)
T PRK14706 216 --------PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG--LAHF---DGGPLYEYADPRKGYHYDWNT--YIFDYGR 280 (639)
T ss_pred --------HHHHHHHHHHHHHCCCEEEEEecccccCcchhh--hhcc---CCCcceeccCCcCCcCCCCCC--cccCCCC
Confidence 899999999999999999999999999875421 2223 333333 2222 243334432 2589999
Q ss_pred HHHHHHHHHHHHHHHHcCceeEEEEccccccc-cCC--CccccccccCccccCcccccCCCCCChHHHHHHhc--CCCCC
Q 003653 406 PVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-RGS--SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILR 480 (805)
Q Consensus 406 ~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~-~~~--~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--d~~~~ 480 (805)
++||++|+++++||++||||||||||++..|- .+. .-|.. +.+|... .+....+++.+.. ....|
T Consensus 281 ~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~-~~~gg~~---------n~~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 281 NEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVP-NIHGGRE---------NLEAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccc-cccCCcc---------cHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999887762 211 11321 3343321 1112234554442 12346
Q ss_pred CceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHH-HHhCCCCccCCCCCCCCceeeeccc
Q 003653 481 GVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAE-CLCGSPNLYQGGGRKPWNSINFVCA 558 (805)
Q Consensus 481 ~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~-~l~~~~~~~~~~~~~p~~~vnfv~n 558 (805)
++++|||.|... ++..... ...|+++.||..+.+.+..++..+.... .+.. .+..+ ..| ......| |++|
T Consensus 351 ~~~~iAE~~~~~~~v~~~~~-~G~gFD~~w~~~w~~~~l~~~~~~~~~r-~~~~~~lt~~-~~y----~~~e~~i-l~~S 422 (639)
T PRK14706 351 GCMMIAEESTSFPGVTVPTP-YGLGFDYKWAMGWMNDTLAYFEQDPLWR-KYHHHKLTFF-NVY----RTSENYV-LAIS 422 (639)
T ss_pred CeEEEEECCCCCcCcccccC-CCCccccEeccHHHHHHHHHhccCchhh-hhchhccchh-hhh----hccccEe-cCCC
Confidence 899999998643 2221111 2467999999999888877776443221 1111 11100 011 1111223 7899
Q ss_pred CCCcchHH--HHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccc
Q 003653 559 HDGFSLAD--LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYG 636 (805)
Q Consensus 559 HD~~rl~d--~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G 636 (805)
||+.+... ++.. ..|. ...+.+++|++++++||+||+||||||+|+|
T Consensus 423 HDev~~~k~sl~~k------~~g~-------------------------~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG 471 (639)
T PRK14706 423 HDEVVHLKKSMVMK------MPGD-------------------------WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFA 471 (639)
T ss_pred CccccCCccchHhH------cCCC-------------------------HHHHHHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 99975321 1110 0010 0123567888999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEE
Q 003653 637 HTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVA 715 (805)
Q Consensus 637 ~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vla 715 (805)
..+. ++ ....++|+..+. ....+++|+|+|++||+++|+|+.+++.. ..++|... -+.+++|+|
T Consensus 472 ~~~e-----w~---~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~-~~f~wi~~------~d~~~~Vla 536 (639)
T PRK14706 472 QGTE-----WN---HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKRE-EGLYWVSA------DDTDNSVYA 536 (639)
T ss_pred CCCC-----CC---cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCC-CCeEEEEe------ecCCCCEEE
Confidence 6432 21 345689987652 23679999999999999999999888653 22333211 123568999
Q ss_pred EEEEcCCC-CEEEEEEeCCCC---cEEEEcCCCCCCceEEEecCCCCCCCCc--cCCCCchhhhhhhhccCCCCceeEEe
Q 003653 716 FTLIDSVK-GEIYVAFNASHL---PVIISLPKRPGYRWEPLVDTSKPEPFDF--LSSDLPAKEIAIKQYAPFLDANLYPM 789 (805)
Q Consensus 716 f~R~~~~~-~~~~Vv~N~~~~---~~~v~Lp~~~g~~w~~v~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 789 (805)
|.|..... +.++||+|++.. ...|.+|. .+.|++|++|......+. ....+. +.......+..+..++|
T Consensus 537 F~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~--~g~~~~i~nsd~~~~gG~g~~n~~~~---~~~~~~~g~~~si~i~l 611 (639)
T PRK14706 537 YVRRDSESGAWSLAVANLTPVYREQYRIGVPQ--GGEYRVLLSTDDGEYGGFGTQQPDLM---ASQEGWHGQPHSLSLNL 611 (639)
T ss_pred EEEecCCCCeeEEEEEeCCCCCcCCeEECCCC--CCeEEEEEcCCccccCCCCCCCCcee---ccccccCCCccEEEEEe
Confidence 99997542 359999999984 45666664 469999999987543332 111111 11112233456789999
Q ss_pred eCCeEEEEEeCCC
Q 003653 790 LSYSSIILLLSPD 802 (805)
Q Consensus 790 ~~~s~~vl~~~~~ 802 (805)
||++++||....+
T Consensus 612 p~~~~~~~~~~~~ 624 (639)
T PRK14706 612 PPSSVLILEFVGD 624 (639)
T ss_pred CCcEEEEEEECCC
Confidence 9999999987643
No 14
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2e-71 Score=661.93 Aligned_cols=575 Identities=20% Similarity=0.348 Sum_probs=385.5
Q ss_pred CCCCCeEEeC----CeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcC
Q 003653 95 PTPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDG 170 (805)
Q Consensus 95 ~~plGa~~~~----~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~ 170 (805)
...|||++.. +||+|+||||+|++|+|+ ++|+.|.. ...+|.+ ...+|+|+++|++..+|..|+|++..
T Consensus 117 ~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~----gdfn~w~~-~~~~m~~--~~~~Gvw~~~i~~~~~g~~Y~y~v~~ 189 (726)
T PRK05402 117 YETLGAHPVTVDGVSGVRFAVWAPNARRVSVV----GDFNGWDG-RRHPMRL--RGESGVWELFIPGLGEGELYKFEILT 189 (726)
T ss_pred hhccccEEeccCCCCcEEEEEECCCCCEEEEE----EEcCCCCC-ccccceE--cCCCCEEEEEeCCCCCCCEEEEEEeC
Confidence 3589999885 799999999999999999 46666643 3456753 22579999999999999999999974
Q ss_pred ccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCC------CCCCCcEEEEE
Q 003653 171 KFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK------YPQRDLIIYEV 244 (805)
Q Consensus 171 ~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~------~~~~~~vIYei 244 (805)
. +|... .+.||||+++..+. ...++|.+ .+.|.|+++.+.. ...++++|||+
T Consensus 190 ~----~g~~~----~~~DPYa~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~ 247 (726)
T PRK05402 190 A----DGELL----LKADPYAFAAEVRP-------------ATASIVAD-LSQYQWNDAAWMEKRAKRNPLDAPISIYEV 247 (726)
T ss_pred C----CCcEe----ecCCCceEEEecCC-------------CCcEEEeC-CccCCCCCcchhhcccccCcccCCcEEEEE
Confidence 3 34332 36899999986441 12345544 3579999887642 24578999999
Q ss_pred eeccccccCCCCCCCCcChhhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCC
Q 003653 245 HVRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISY 323 (805)
Q Consensus 245 ~v~~Ft~~~~s~~~~~G~~~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y 323 (805)
||++|+.+. .....|+|++++++| +|||+||||+||||||++++. ..+|||++.+||+|+++|
T Consensus 248 hv~~f~~~~--~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~--------------~~~~GY~~~~y~ai~~~~ 311 (726)
T PRK05402 248 HLGSWRRHE--DGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPF--------------DGSWGYQPTGYYAPTSRF 311 (726)
T ss_pred ehhhhccCC--CCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCC--------------CCCCCCCcccCCCcCccc
Confidence 999999851 233468999999996 999999999999999999752 136999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCC-CCCccccCCCccccC
Q 003653 324 SSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KGEFYNYSGCGNTFN 402 (805)
Q Consensus 324 gt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~-~g~~~~~~g~~~~ln 402 (805)
|+ ++|||+||++||++||+||||+|+||++.++.. +..|.+. +.|+..++ .+.+..|.+ ..+|
T Consensus 312 Gt----------~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~--~~y~~~~~~~~~~~~w~~--~~~n 375 (726)
T PRK05402 312 GT----------PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG--LARFDGT--ALYEHADPREGEHPDWGT--LIFN 375 (726)
T ss_pred CC----------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc--hhccCCC--cceeccCCcCCccCCCCC--cccc
Confidence 97 899999999999999999999999999865421 2223321 12222222 234444443 3789
Q ss_pred CCCHHHHHHHHHHHHHHHHcCceeEEEEccccccc-cC----CCccccccccCccccCcccccCCCCCChHHHHHHhc--
Q 003653 403 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-RG----SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN-- 475 (805)
Q Consensus 403 ~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~-~~----~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~-- 475 (805)
+++|+||++|+++++||+++|||||||||++..+. .+ ...|.. +.++... ......+++.+.+
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~-~~~~~~~---------~~~~~~fl~~~~~~~ 445 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIP-NIYGGRE---------NLEAIDFLRELNAVV 445 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccccc-ccccCcC---------CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876552 11 122321 1111100 0011234444432
Q ss_pred CCCCCCceeeeeecCCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCCccCCCCCCCC
Q 003653 476 DPILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGRKPW 550 (805)
Q Consensus 476 d~~~~~~~ligE~w~~~~-~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~----~~~~~~l~~~~~~~~~~~~~p~ 550 (805)
....|++++|||.+.... ..........+++..||..|++.+..++....... ..+...+.. .+.
T Consensus 446 ~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~------- 515 (726)
T PRK05402 446 HEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY---AYS------- 515 (726)
T ss_pred HHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH---hhh-------
Confidence 124568999999754221 11111112245888999888776666654321110 000000000 011
Q ss_pred ceeeecccCCCcc-----hHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC
Q 003653 551 NSINFVCAHDGFS-----LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 625 (805)
Q Consensus 551 ~~vnfv~nHD~~r-----l~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pG 625 (805)
...+++.|||+.+ +.+.+. |+ .....+++|++++++||+||
T Consensus 516 e~~~l~~sHD~~~~g~~~l~~~~~---------g~-------------------------~~~~~~~lrl~~~~~~t~pG 561 (726)
T PRK05402 516 ENFVLPLSHDEVVHGKGSLLGKMP---------GD-------------------------DWQKFANLRAYYGYMWAHPG 561 (726)
T ss_pred ccccCCCCCceeeeCcccHHhhCC---------CC-------------------------HHHHHHHHHHHHHHHHHCCC
Confidence 1134778999853 222210 00 01125668889999999999
Q ss_pred ceEEeccccccCCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCC
Q 003653 626 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGL 704 (805)
Q Consensus 626 iP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~ 704 (805)
+||||||||+|+.+... ..+.|+|+..+. ...++++|+|+|++||+++|+|+.+++.. ..++|...
T Consensus 562 ~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~-~~~~~~~~---- 628 (726)
T PRK05402 562 KKLLFMGGEFGQGREWN--------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDP-EGFEWIDA---- 628 (726)
T ss_pred cCEeeCchhcCCCCCCC--------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCc-CCeeEEec----
Confidence 99999999999986432 356899987532 23789999999999999999999887654 12233211
Q ss_pred CCCCCCCcEEEEEEEcCC-CCEEEEEEeCCCCc---EEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccC
Q 003653 705 PDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLP---VIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAP 780 (805)
Q Consensus 705 ~~~~~~~~vlaf~R~~~~-~~~~~Vv~N~~~~~---~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (805)
...+.+|++|.|...+ ++.++||+|++..+ ..+.+|. ++.|+.++++......+.-........+...+...
T Consensus 629 --~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~--~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g 704 (726)
T PRK05402 629 --DDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ--AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHG 704 (726)
T ss_pred --ccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC--CCeEEEEEcCcchhhCCCCCCCCCceeccccccCC
Confidence 1224679999998653 47899999999764 3556664 35999999998754322211110000011112233
Q ss_pred CCCceeEEeeCCeEEEEEeCC
Q 003653 781 FLDANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 781 ~~~~~~~~v~~~s~~vl~~~~ 801 (805)
...+..+.|||+|++||....
T Consensus 705 ~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 705 RPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred CCCEEEEEeCCCEEEEEEEcC
Confidence 445689999999999998753
No 15
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.2e-71 Score=648.79 Aligned_cols=568 Identities=19% Similarity=0.303 Sum_probs=376.3
Q ss_pred CCCeEEeC----CeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCcc
Q 003653 97 PFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (805)
Q Consensus 97 plGa~~~~----~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~ 172 (805)
.||||+.+ +||+|+||||+|++|+|++ +++.|.. ...+|.+ ...+|+|+++|++..+|..|+|+|...
T Consensus 16 ~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~----dfn~w~~-~~~~m~~--~~~~Gvw~~~i~~~~~g~~Y~y~v~~~- 87 (613)
T TIGR01515 16 LLGSHYMELDGVSGTRFCVWAPNAREVRVAG----DFNYWDG-REHPMRR--RNDNGIWELFIPGIGEGELYKYEIVTN- 87 (613)
T ss_pred hcCceEeccCCcCcEEEEEECCCCCEEEEEE----ecCCCCC-ceecceE--ecCCCEEEEEeCCCCCCCEEEEEEECC-
Confidence 69999987 7999999999999999994 4555443 3457753 224699999999999999999999742
Q ss_pred CCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCC-----CCCCC-CCcEEEEEee
Q 003653 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLP-----LKYPQ-RDLIIYEVHV 246 (805)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~-----~~~~~-~~~vIYei~v 246 (805)
+|. ...+.||||+++..+. ...++|.+ .+.|.|.+..+ +..++ ++++|||+||
T Consensus 88 ---~g~----~~~~~DPYA~~~~~~~-------------~~~s~v~d-~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv 146 (613)
T TIGR01515 88 ---NGE----IRLKADPYAFYAEVRP-------------NTASLVYD-LEGYSWQDQKWQEKRKAKTPYEKPVSIYELHL 146 (613)
T ss_pred ---CCc----EEEeCCCCEeeeccCC-------------CCcEEEEC-CccCccCchhhhhcccccCcccCCceEEEEeh
Confidence 232 2357899999885331 11234443 24576665433 23344 4789999999
Q ss_pred ccccccCCCCCCCCcChhhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCC
Q 003653 247 RGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (805)
Q Consensus 247 ~~Ft~~~~s~~~~~G~~~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt 325 (805)
++|+. .|||++++++| +|||+||||+||||||++++. .++|||++.+||+|+++||+
T Consensus 147 ~~~~~--------~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~--------------~~~wGY~~~~y~~~~~~~Gt 204 (613)
T TIGR01515 147 GSWRH--------GLSYRELADQLIPYVKELGFTHIELLPVAEHPF--------------DGSWGYQVTGYYAPTSRFGT 204 (613)
T ss_pred hhccC--------CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC--------------CCCCCCCcccCcccccccCC
Confidence 99976 49999999997 999999999999999999642 13699999999999999997
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCC
Q 003653 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNH 405 (805)
Q Consensus 326 ~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~ 405 (805)
++|||+||++||++||+||||+|+||++.++.. ...|.+. +.|+...+.......++ .+++|+++
T Consensus 205 ----------~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~--~~y~~~~~~~~~~~~w~-~~~~~~~~ 269 (613)
T TIGR01515 205 ----------PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG--LAEFDGT--PLYEHKDPRDGEHWDWG-TLIFDYGR 269 (613)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEEEecccCcCCccch--hhccCCC--cceeccCCccCcCCCCC-CceecCCC
Confidence 899999999999999999999999999876421 1223221 22333322212222233 36899999
Q ss_pred HHHHHHHHHHHHHHHHcCceeEEEEcccccccc-----CCCccccccccCccccCcccccCCCCCChHHHHHHhc--CCC
Q 003653 406 PVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPI 478 (805)
Q Consensus 406 ~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~-----~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--d~~ 478 (805)
|+||++|++++++|+++|||||||||+++.|.. +...|.. +.++. ........|++.+.. ...
T Consensus 270 ~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 270 PEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSP-NEDGG---------RENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccc-cccCC---------cCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865531 1122322 11110 011112234554432 124
Q ss_pred CCCceeeeeecCCCCcccccc-cCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecc
Q 003653 479 LRGVKLIAEAWDTGGLYQVGI-FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 557 (805)
Q Consensus 479 ~~~~~ligE~w~~~~~~~~~~-~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~ 557 (805)
.|++++|||.+.......... -...++++.||..|++.++.++.... ....+..........+ .-.....+++
T Consensus 340 ~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~e~~~~~~ 413 (613)
T TIGR01515 340 FPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP-VERQYHHQLITFSMLY-----AFSENFVLPL 413 (613)
T ss_pred CCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhCh-hhHhhccccccHHHHH-----HhhhccccCC
Confidence 579999999764321111111 11346899999999998888775322 2222110000000000 0001123678
Q ss_pred cCCCc-----chHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecc
Q 003653 558 AHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMG 632 (805)
Q Consensus 558 nHD~~-----rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~G 632 (805)
|||+. |+...+ .|+. ....+++|++++++||+||+||||||
T Consensus 414 sHD~~~~g~~~i~~~~---------~g~~-------------------------~~~~~~~r~~~~~~~t~pG~plif~G 459 (613)
T TIGR01515 414 SHDEVVHGKKSLLNKM---------PGDY-------------------------WQKFANYRALLGYMWAHPGKKLLFMG 459 (613)
T ss_pred CCCCcccCcccHHHhC---------CCch-------------------------HHHHHHHHHHHHHHHhCCCCCEEEcc
Confidence 89984 332221 1110 01245688899999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCC
Q 003653 633 DEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKS 711 (805)
Q Consensus 633 dE~G~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~ 711 (805)
+|+|+.+... ....++|+..+. ....+++|+|+||+||+++|+|+.+++.. ..++|... -+.+.
T Consensus 460 ~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~-~~~~~~~~------~~~~~ 524 (613)
T TIGR01515 460 SEFAQGSEWN--------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDP-QGFEWIDV------DDDEQ 524 (613)
T ss_pred hhcCcCCCCC--------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCC-CceEEEEc------ccCCC
Confidence 9999975421 135789986432 24789999999999999999999887644 12333211 12346
Q ss_pred cEEEEEEEcCC-CCEEEEEEeCCCCcEE---EEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeE
Q 003653 712 RFVAFTLIDSV-KGEIYVAFNASHLPVI---ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLY 787 (805)
Q Consensus 712 ~vlaf~R~~~~-~~~~~Vv~N~~~~~~~---v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (805)
++++|.|.... ++.++||+|++..+.. +.+|. ++.|+++++|......+.-........+.-........+..+
T Consensus 525 ~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~--~g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i 602 (613)
T TIGR01515 525 SVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQ--PGQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTM 602 (613)
T ss_pred CEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCC--CCeEEEEEeCChhhcCCCCcCCCCceeccccccCCCCCEEEE
Confidence 79999998752 3579999999987654 66664 349999999877542111111101111111122334567889
Q ss_pred EeeCCeEEEE
Q 003653 788 PMLSYSSIIL 797 (805)
Q Consensus 788 ~v~~~s~~vl 797 (805)
.|||+|++||
T Consensus 603 ~iP~~~~~~~ 612 (613)
T TIGR01515 603 TLPPLATSWL 612 (613)
T ss_pred EeCCcEEEEe
Confidence 9999999987
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-69 Score=655.55 Aligned_cols=564 Identities=21% Similarity=0.344 Sum_probs=391.1
Q ss_pred CCCeEEe--------CCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEE
Q 003653 97 PFGATLR--------DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKF 168 (805)
Q Consensus 97 plGa~~~--------~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i 168 (805)
.||||.. .+||+|+||||+|++|+|+ +|||.|.. ...+|.+ ...+|+|+++||+...|..|+|+|
T Consensus 622 ~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vv----gdFN~w~~-~~~~m~~--~~~~GvW~~fipg~~~G~~Yky~i 694 (1224)
T PRK14705 622 VLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVK----GDFNGWDG-REHSMRS--LGSSGVWELFIPGVVAGACYKFEI 694 (1224)
T ss_pred hcCCeEeeccCccCCCCeEEEEEECCCCCEEEEE----EEecCCCC-CcccceE--CCCCCEEEEEECCCCCCCEEEEEE
Confidence 5999974 2489999999999999999 56776654 3457753 245799999999999999999999
Q ss_pred cCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCC-----CC-CCCcEEE
Q 003653 169 DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-----YP-QRDLIIY 242 (805)
Q Consensus 169 ~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~-----~~-~~~~vIY 242 (805)
.+. +|... .+.||||+.+..+ +...++|.+. .|.|+++.|.. .+ .++++||
T Consensus 695 ~~~----~g~~~----~k~DPyA~~~e~~-------------p~~aS~V~d~--~~~w~d~~W~~~r~~~~~~~~p~~IY 751 (1224)
T PRK14705 695 LTK----AGQWV----EKADPLAFGTEVP-------------PLTASRVVEA--SYAFKDAEWMSARAERDPHNSPMSVY 751 (1224)
T ss_pred EcC----CCcEE----ecCCccccccccC-------------CCCCeEEeCC--CCCcCChhhhhccccCCCCcCCcEEE
Confidence 854 34432 3579999987432 1234556543 48888765532 22 4789999
Q ss_pred EEeeccccccCCCCCCCCcChhhhccc-hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCC
Q 003653 243 EVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMI 321 (805)
Q Consensus 243 ei~v~~Ft~~~~s~~~~~G~~~g~~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~ 321 (805)
|+|+++|+. .|+|.+++++ |+|||+|||||||||||++++. .++|||++.+||+|++
T Consensus 752 EvHvgsf~~--------~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~--------------~~swGY~~~~y~ap~~ 809 (1224)
T PRK14705 752 EVHLGSWRL--------GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPF--------------GGSWGYQVTSYFAPTS 809 (1224)
T ss_pred EEEeccccc--------CCchHHHHHHHHHHHHHhCCCEEEECccccCCC--------------CCCCCCCccccCCcCc
Confidence 999999987 4789999988 5999999999999999999752 2469999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCcccee-eCCC-CCccccCCCcc
Q 003653 322 SYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAPK-GEFYNYSGCGN 399 (805)
Q Consensus 322 ~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~-~~~~-g~~~~~~g~~~ 399 (805)
+||| ++|||+||++||++||+||||+|+||++.+. ++ ...| ++..+|. .++. |....| |. .
T Consensus 810 ryGt----------~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~-l~~f---dg~~~y~~~d~~~g~~~~W-g~-~ 872 (1224)
T PRK14705 810 RFGH----------PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WA-LAQF---DGQPLYEHADPALGEHPDW-GT-L 872 (1224)
T ss_pred ccCC----------HHHHHHHHHHHHHCCCEEEEEeccccCCcch-hh-hhhc---CCCcccccCCcccCCCCCC-CC-c
Confidence 9997 8999999999999999999999999997653 21 2223 3333333 3332 333333 32 4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccc-----cCCCccccccccCccccCcccccCCCCCChHHHHHHh
Q 003653 400 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 474 (805)
Q Consensus 400 ~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~-----~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~ 474 (805)
.+|+++++||++|+++++||+++|||||||||++..|- ++...|.. |.||.... +....|++.+.
T Consensus 873 ~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~p-n~~gg~en---------~~ai~fl~~ln 942 (1224)
T PRK14705 873 IFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRP-NRFGGREN---------LEAISFLQEVN 942 (1224)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccc-cccCCccC---------hHHHHHHHHHH
Confidence 69999999999999999999999999999999987652 23355654 55554321 11223555443
Q ss_pred c--CCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCCccCCCCC
Q 003653 475 N--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGR 547 (805)
Q Consensus 475 ~--d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~----~~~~~~l~~~~~~~~~~~~ 547 (805)
. ....|++++|||.+... +....-.....||+..||..|++.+..++..+.... ..+...+... |.
T Consensus 943 ~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya---~~---- 1015 (1224)
T PRK14705 943 ATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYA---FT---- 1015 (1224)
T ss_pred HHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHH---hh----
Confidence 3 11357999999987543 222222223467999999999887777776543211 1111111110 11
Q ss_pred CCCceeeecccCCCcchH--HHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC
Q 003653 548 KPWNSINFVCAHDGFSLA--DLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 625 (805)
Q Consensus 548 ~p~~~vnfv~nHD~~rl~--d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pG 625 (805)
..+.+..|||+.... .++. ...|+ .| .+...+|++++++|++||
T Consensus 1016 ---e~fvl~~SHDevvhgk~sl~~------km~Gd----------~~---------------~k~a~lR~~~a~~~~~PG 1061 (1224)
T PRK14705 1016 ---ENFLLPISHDEVVHGKGSMLR------KMPGD----------RW---------------QQLANLRAFLAYQWAHPG 1061 (1224)
T ss_pred ---cCEecccccccccccchhHHH------hCCCc----------HH---------------HHHHHHHHHHHHHHhcCC
Confidence 112245588874211 1110 01111 01 134567889999999999
Q ss_pred ceEEeccccccCCCCCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCC
Q 003653 626 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGL 704 (805)
Q Consensus 626 iP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~ 704 (805)
+||||||+|||.....+ ....++|...+. .+..++.|+|.|++||+++|+|...++.. ..++|...
T Consensus 1062 k~LlFMG~Efgq~~ew~--------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~-~gf~wi~~---- 1128 (1224)
T PRK14705 1062 KQLIFMGTEFGQEAEWS--------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEP-GGFQWING---- 1128 (1224)
T ss_pred cCEEECccccCCCCCcc--------ccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCC-CceEEeec----
Confidence 99999999999976432 224589988663 35789999999999999999998877654 34555321
Q ss_pred CCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEE---EEcCCCCCCceEEEecCCCCCCCCc--cC-CCCchhhhhhhhc
Q 003653 705 PDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVI---ISLPKRPGYRWEPLVDTSKPEPFDF--LS-SDLPAKEIAIKQY 778 (805)
Q Consensus 705 ~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~---v~Lp~~~g~~w~~v~~t~~~~~~~~--~~-~~~~~~~~~~~~~ 778 (805)
-+.+++|++|.|++..++.++||+|++..++. +.+|. .+.|+++++|......+. .. +.+.... ...
T Consensus 1129 --~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~--~G~y~eilnsd~~~ygGsg~~n~~~~~~~~---~~~ 1201 (1224)
T PRK14705 1129 --GDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPA--AGAWTEVLNTDHETYGGSGVLNPGSLKATT---EGQ 1201 (1224)
T ss_pred --CCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCC--CCeEEEEEeCchhhcCCCCcCCCCceeecc---ccc
Confidence 13356899999997655679999999987765 44553 359999999987643222 11 1111111 123
Q ss_pred cCCCCceeEEeeCCeEEEEEeC
Q 003653 779 APFLDANLYPMLSYSSIILLLS 800 (805)
Q Consensus 779 ~~~~~~~~~~v~~~s~~vl~~~ 800 (805)
.....+.+++|||++++||...
T Consensus 1202 ~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1202 DGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred CCCCceEEEEecCCEEEEEEEC
Confidence 3445678999999999998764
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=8e-67 Score=605.62 Aligned_cols=596 Identities=19% Similarity=0.243 Sum_probs=398.6
Q ss_pred CCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcC------CCCCceeeEE
Q 003653 94 YPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKDMLYGYK 167 (805)
Q Consensus 94 ~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~------~~~g~~Y~y~ 167 (805)
....|||++.++||+|+||||+|++|+|+ +|||+|.. ...+|.+ ...|+|+++||+ ..+|.+|+|+
T Consensus 103 ~y~~lGa~~~~~g~~FrvWAP~A~~V~Lv----GdFN~W~~-~~~~M~~---~~~GvWe~~ip~~~g~~~~~~G~~Yky~ 174 (758)
T PLN02447 103 GYEKFGFNRSEGGITYREWAPGAKAAALI----GDFNNWNP-NAHWMTK---NEFGVWEIFLPDADGSPAIPHGSRVKIR 174 (758)
T ss_pred HHHhceeEEecCCEEEEEECCCCCEEEEE----EecCCCCC-CccCcee---CCCCEEEEEECCccccccCCCCCEEEEE
Confidence 34579999999999999999999999999 78888764 4567753 457999999998 7889999999
Q ss_pred EcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCC--CCCCCCCCCCCCCCCCCcEEEEEe
Q 003653 168 FDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DEFDWEGDLPLKYPQRDLIIYEVH 245 (805)
Q Consensus 168 i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~w~~~~~~~~~~~~~vIYei~ 245 (805)
|.+. +|.. ...+||||+.+..+..- ......+++.++. +.|.|+++.+. ..++++|||+|
T Consensus 175 i~~~----~g~~----~~r~dpya~~~~~~p~~--------~~~~~~svv~dp~~~~~y~w~~~~~~--~~~~~~IYE~H 236 (758)
T PLN02447 175 METP----DGRW----VDRIPAWIKYAVQAPGE--------IGAPYNGVYWDPPEEEKYVFKHPRPP--RPAALRIYEAH 236 (758)
T ss_pred EEeC----CCcE----EeecCchHheeeccCCc--------cCCCCceEEeCCCCCCCCCCCCCCCC--CCCCCEEEEEe
Confidence 9753 3322 23589999987543110 0011244555432 35999976543 34689999999
Q ss_pred eccccccCCCCCCCCcChhhhcc-chhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCC
Q 003653 246 VRGFTRHESSKTEHPGTYLGVVE-KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (805)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~g~~~-~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~yg 324 (805)
|+.|+.. ...|+|+++++ +|+|||+||||+||||||++++. +.+|||++.+||+|+++||
T Consensus 237 vg~~~~~-----~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~--------------~~~wGY~~~~~fa~~~~~G 297 (758)
T PLN02447 237 VGMSSEE-----PKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAY--------------YGSFGYHVTNFFAVSSRSG 297 (758)
T ss_pred CCcccCC-----CCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCC--------------CCCCCcCcccCcccccccC
Confidence 9988642 23699999865 58999999999999999999752 2469999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCC
Q 003653 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCN 404 (805)
Q Consensus 325 t~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~ 404 (805)
+ ++|||+||++||++||+||||||+||++.+...+ ...|++.. ..||...+.|.. ..++. ..+|++
T Consensus 298 t----------p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~g-l~~fDg~~-~~Yf~~~~~g~~-~~w~~-~~~N~~ 363 (758)
T PLN02447 298 T----------PEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDG-LNGFDGTD-GSYFHSGPRGYH-WLWDS-RLFNYG 363 (758)
T ss_pred C----------HHHHHHHHHHHHHCCCEEEEEecccccccccccc-ccccCCCC-ccccccCCCCCc-CcCCC-ceecCC
Confidence 7 8999999999999999999999999998765332 33455533 345555544432 22332 369999
Q ss_pred CHHHHHHHHHHHHHHHHcCceeEEEEcccccccc-C----CCcccccc-ccCccccCcccccCCCCCChHHHHHHhc--C
Q 003653 405 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-G----SSLWDSVN-VYGIPIEGDLLTTGTPLRSPPLIDLISN--D 476 (805)
Q Consensus 405 ~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~-~----~~~w~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~i~~--d 476 (805)
+++||++|+++++||++||||||||||+++.|-. . .+|+...+ .||...+.+. ..++..+.. .
T Consensus 364 ~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a---------~~fL~~~N~~i~ 434 (758)
T PLN02447 364 NWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDA---------VVYLMLANDLLH 434 (758)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHH---------HHHHHHHHHHHH
Confidence 9999999999999999999999999999987742 1 12332211 2333222211 223443332 1
Q ss_pred CCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCC---cHHHHHHHHhCCCCccCCCCCCCCce
Q 003653 477 PILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDG---FAGAFAECLCGSPNLYQGGGRKPWNS 552 (805)
Q Consensus 477 ~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~p~~~ 552 (805)
...|++++|||.+... ++...-.-.+.||+..||..+.+...++++.... ....+...|... +.....
T Consensus 435 ~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r--------~~~E~~ 506 (758)
T PLN02447 435 GLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNR--------RYTEKC 506 (758)
T ss_pred HhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcc--------cccCce
Confidence 2467999999987543 2222222234579999999999999988876431 233444444321 123578
Q ss_pred eeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCc-eEEec
Q 003653 553 INFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV-PMISM 631 (805)
Q Consensus 553 vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGi-P~Iy~ 631 (805)
|.|.+|||+....+.--.. .+..++ .. ....+. ...+..+.+ .....|++.+++|++||. +++||
T Consensus 507 I~y~eSHDevv~Gkksl~~---~l~d~~------my--~~m~~~--~~~~~~~~R-~~~lhkmirl~~~~~pG~g~L~FM 572 (758)
T PLN02447 507 VAYAESHDQALVGDKTIAF---WLMDKE------MY--DGMSTL--TPATPVVDR-GIALHKMIRLITMALGGEGYLNFM 572 (758)
T ss_pred EeccCCcCeeecCcchhHh---hhcchh------hh--hcCCCC--hhhhhhHHH-HHHHHHHHHHHHHhCCCCcceeec
Confidence 8999999996442211000 000000 00 000010 001111111 123345566789999999 79999
Q ss_pred cccccCCC------CCCCCCCCCCCCcccccCCcccCC---hhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCC
Q 003653 632 GDEYGHTK------GGNNNTYCHDNDINYFRWDKKEES---KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAP 702 (805)
Q Consensus 632 GdE~G~~~------~g~~n~y~~d~~~~~~~W~~~~~~---~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~ 702 (805)
|+|||+.. .+++.+|. ..+++|+..+.. .+.|.+|+|.|++|++++++|..+- .. |
T Consensus 573 GnEFg~~ew~Dfpr~~n~ws~~----~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~-~~---i------- 637 (758)
T PLN02447 573 GNEFGHPEWIDFPREGNGWSYD----KCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH-QY---V------- 637 (758)
T ss_pred ccccCCchhccCcccccccCcc----cccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC-ce---e-------
Confidence 99999963 34444332 235789986532 4789999999999999999997542 11 1
Q ss_pred CCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCC-c---EEEEcCCCCCCceEEEecCCCCCCCCccCCCC-chhhhhhhh
Q 003653 703 GLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL-P---VIISLPKRPGYRWEPLVDTSKPEPFDFLSSDL-PAKEIAIKQ 777 (805)
Q Consensus 703 ~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~-~---~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~-~~~~~~~~~ 777 (805)
...+++++|++|.|. .++||+|++.. + ..|.+|. .++|+.|++|......+.-.... ....+.-..
T Consensus 638 --~~~d~~~~Viaf~R~-----~ll~V~NF~p~~s~~~Y~igvp~--~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~ 708 (758)
T PLN02447 638 --SRKDEGDKVIVFERG-----DLVFVFNFHPTNSYSDYRVGCDK--PGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGN 708 (758)
T ss_pred --eeecCCCCEEEEEeC-----CeEEEEeCCCCCCCCCcEECCCC--CCeEEEEECCCchhcCCCCccCCCccEEecccC
Confidence 113456789999994 38999999963 3 3454543 45999999998755433211110 000011122
Q ss_pred ccCCCCceeEEeeCCeEEEEEeCCCC
Q 003653 778 YAPFLDANLYPMLSYSSIILLLSPDE 803 (805)
Q Consensus 778 ~~~~~~~~~~~v~~~s~~vl~~~~~~ 803 (805)
...+..+..+.+||++++||-+..+.
T Consensus 709 ~~~~~~s~~v~iP~~~~~vl~~~~~~ 734 (758)
T PLN02447 709 FDNRPHSFMVYAPSRTAVVYAPVDED 734 (758)
T ss_pred cCCCCcEEEEEeCCceEEEEEECCcc
Confidence 34456778999999999999987654
No 18
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.1e-64 Score=589.73 Aligned_cols=486 Identities=17% Similarity=0.222 Sum_probs=339.9
Q ss_pred EeCCeEEEEEEcCC---CCeEEEEEEeCCCccCCceeeeeecccccCC-CCCEEEEEEcCC--CCCceeeEEEcCccCCC
Q 003653 102 LRDGGVNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGD--FKDMLYGYKFDGKFSPQ 175 (805)
Q Consensus 102 ~~~~~~~F~vwap~---a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~-~~gvW~~~v~~~--~~g~~Y~y~i~~~~~~~ 175 (805)
+.++.+.++|+.+. ..+|.|++...++ ...++|.+.... ...+|+++|+-. ..-..|.|++...
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~------~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~---- 85 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE------EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH---- 85 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC------EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC----
Confidence 46788999999874 4577776533221 235677654322 225799998753 3346777777421
Q ss_pred CCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCcEEEEEeeccccccCCC
Q 003653 176 EGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS 255 (805)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~~~~~~~~~~~~~vIYei~v~~Ft~~~~s 255 (805)
.+..| .+- ..+ +.. .+.....|.+......+.+.+++|||||+|++|.+++.+
T Consensus 86 ~~~~~------~~~--~g~------~~~-------------~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~ 138 (598)
T PRK10785 86 DRQRW------FTP--QGF------SRR-------------PPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPR 138 (598)
T ss_pred CEEEE------EcC--Cce------eec-------------cCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcc
Confidence 11111 000 000 000 000001122211111122349999999999999987764
Q ss_pred CC--------------------------------CCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCC
Q 003653 256 KT--------------------------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (805)
Q Consensus 256 ~~--------------------------------~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~ 303 (805)
++ .++|||+||+++|||||+||||+|||+||+++++
T Consensus 139 n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s------------ 206 (598)
T PRK10785 139 EAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPS------------ 206 (598)
T ss_pred cCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCC------------
Confidence 32 2479999999999999999999999999998542
Q ss_pred CCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccc------cC--
Q 003653 304 YKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS------FR-- 375 (805)
Q Consensus 304 ~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~------~~-- 375 (805)
+|||++.||+++|++||| .++|++||++||++||+||||+|+||++.++.|+.... +.
T Consensus 207 ----~hgYd~~Dy~~iDp~~Gt----------~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~ 272 (598)
T PRK10785 207 ----VHKYDTEDYRHVDPQLGG----------DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHP 272 (598)
T ss_pred ----CCCcCcccccccCcccCC----------HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCC
Confidence 599999999999999997 89999999999999999999999999998876532110 11
Q ss_pred CCCCccceeeCCCCCccccCCC--ccccCCCCHHHHHHHHH----HHHHHHHc-CceeEEEEccccccccC------CCc
Q 003653 376 GVDNSVYYMLAPKGEFYNYSGC--GNTFNCNHPVVRQFIVD----CLRYWVTE-MHVDGFRFDLASIMTRG------SSL 442 (805)
Q Consensus 376 ~~~~~~yy~~~~~g~~~~~~g~--~~~ln~~~~~vr~~i~d----~l~~W~~e-~gvDGfR~D~a~~l~~~------~~~ 442 (805)
......||.+.+.|.+..|.++ .++||++||+||++|++ ++++|+++ |||||||+|+|++++.. .+|
T Consensus 273 ~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f 352 (598)
T PRK10785 273 DSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQH 352 (598)
T ss_pred CCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHH
Confidence 1122457877777776677665 47999999999999995 89999986 99999999999988642 134
Q ss_pred cccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeecCCCCcccccccCCCCcccccch-hHHHHHHHHH
Q 003653 443 WDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNG-KYRDIVRQFI 521 (805)
Q Consensus 443 w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~-~f~~~lr~~~ 521 (805)
|.+ +.+.+++ ..|++++|||.|.....+..+ ..+++.+|+ .|...++.++
T Consensus 353 ~~~-----------------------~~~~vk~--~~pd~~ligE~~~~~~~~l~~----~~~d~~mny~~f~~~~~~~~ 403 (598)
T PRK10785 353 VAG-----------------------ITQAAKE--ENPEAYVLGEHFGDARQWLQA----DVEDAAMNYRGFAFPLRAFL 403 (598)
T ss_pred HHH-----------------------HHHHHHh--hCCCeEEEEeccCChhhhccC----ccccccccchhhhhHHHHHh
Confidence 443 3444443 456899999999654222211 124567775 5888888888
Q ss_pred hCCC-------CcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCC
Q 003653 522 KGTD-------GFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC 594 (805)
Q Consensus 522 ~g~~-------~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~ 594 (805)
.+.. .....+...+......++. ......+||++|||+.|+..++..
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~n~l~nHD~~R~~~~~~~------------------------ 457 (598)
T PRK10785 404 ANTDIAYHPQQIDAQTCAAWMDEYRAGLPH--QQQLRQFNQLDSHDTARFKTLLGG------------------------ 457 (598)
T ss_pred hccccccCccCCCHHHHHHHHHHHHHhCCH--HHHHHhhhccCCCccchhhhhhCC------------------------
Confidence 7532 1234444444322111210 011246799999999998775420
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHH
Q 003653 595 GQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLL 674 (805)
Q Consensus 595 g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~L 674 (805)
..+++|+|++++||+||+||||||||+|+++. .+ ++.|.+|+|+....+ .++++++|+|
T Consensus 458 --------------~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~--~d----p~~R~~m~W~~~~~~-~~l~~~~r~L 516 (598)
T PRK10785 458 --------------DKARMPLALVWLFTWPGVPCIYYGDEVGLDGG--ND----PFCRKPFPWDEAKQD-GALLALYQRM 516 (598)
T ss_pred --------------CHHHHHHHHHHHHhCCCCcEEEeeeeccccCC--CC----CCccCCcCCCcccCc-hHHHHHHHHH
Confidence 13568899999999999999999999999753 22 345778999876555 7999999999
Q ss_pred HHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCC
Q 003653 675 TKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK 743 (805)
Q Consensus 675 i~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~ 743 (805)
|+|||++|+|+.|++..+ ..++++++|.|..+. +.++|++|.+ +.+++.||.
T Consensus 517 i~lRk~~~aL~~G~~~~l---------------~~~~~v~af~R~~~~-~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 517 IALRKKSQALRRGGCQVL---------------YAEGNVVVFARVLQQ-QRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred HHHHhhCcccccCcEEEE---------------EeCCCEEEEEEECCC-CEEEEEEECC-CCeEEeccc
Confidence 999999999999986541 224579999998765 8999999999 678898886
No 19
>PLN02960 alpha-amylase
Probab=100.00 E-value=5.9e-62 Score=563.01 Aligned_cols=544 Identities=19% Similarity=0.245 Sum_probs=344.5
Q ss_pred CCCEEEEEEcCCCCCceeeEEEcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCC--CCCC
Q 003653 147 TGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEF 224 (805)
Q Consensus 147 ~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 224 (805)
.+|+|+.+||++.+|.+|+|+|+.. +|. ...+||||+.+.....-+ ...+++.+. .+.|
T Consensus 323 ~~gw~~~~ip~~~hG~~Yky~v~~~----~g~-----~~~vdpyA~~~qp~~~~~----------~~~~v~~d~~~~~~y 383 (897)
T PLN02960 323 RKAWLKKYIPAIPHGSKYRVYFNTP----DGP-----LERVPAWATYVLPDPDGK----------QWYAIHWEPPPEEAY 383 (897)
T ss_pred CCcEEEEEccCCCCCCEEEEEEEeC----CCc-----eEECCCcceeEeecCCCc----------cceEEEeCCCCCCCC
Confidence 4578888899999999999999743 221 135799999874321100 012233232 2469
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccccccCCCCCCCCcChhhhccc-hhHHHHcCCceEEECcccccCcccccccCCcCCC
Q 003653 225 DWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (805)
Q Consensus 225 ~w~~~~~~~~~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~ 303 (805)
+|+++.+. .+++++|||+||+.|+.. ...|||++++++ |+|||+||||+||||||+++..
T Consensus 384 ~W~~~~p~--~~~~~vIYElHvg~~~~e-----~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~------------ 444 (897)
T PLN02960 384 KWKFERPK--VPKSLRIYECHVGISGSE-----PKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKD------------ 444 (897)
T ss_pred CCCCCCCC--CCCCcEEEEEecccccCC-----CCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC------------
Confidence 99876432 457899999999988642 236899999976 8999999999999999998652
Q ss_pred CCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccce
Q 003653 304 YKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY 383 (805)
Q Consensus 304 ~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy 383 (805)
..+|||++.+||+|+++||| ++|||+||++||++||+||||+|+||++.++..+ +..|+|.. ..||
T Consensus 445 --~~swGY~~~~yfa~~~~yGt----------p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~~-~~Yf 510 (897)
T PLN02960 445 --YSSVGYKVTNFFAVSSRFGT----------PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSN-DCYF 510 (897)
T ss_pred --CCCCCCCcccCCCcccccCC----------HHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCCc-ccee
Confidence 23699999999999999997 8999999999999999999999999999875332 33455532 2344
Q ss_pred eeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEcccccccc-CCCccccccccCc-cccCcccccC
Q 003653 384 MLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR-GSSLWDSVNVYGI-PIEGDLLTTG 461 (805)
Q Consensus 384 ~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~-~~~~w~~~~~~g~-~~~~~~~~~g 461 (805)
..+..|. ...+|+ ..+|+.+++||++|+++++||++||||||||||+++.|.. +.++... .|. .+..+.+
T Consensus 511 ~~~~~g~-~~~WG~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~---~G~~~~~~n~~--- 582 (897)
T PLN02960 511 HSGKRGH-HKRWGT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASF---TGDLDEYCNQY--- 582 (897)
T ss_pred ecCCCCc-cCCCCC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCcccc---CCcccccCCcc---
Confidence 4433333 334454 5689999999999999999999999999999999976532 1111100 000 0000000
Q ss_pred CCCCChHHHHHHhc--CCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCC
Q 003653 462 TPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGS 538 (805)
Q Consensus 462 ~~~~~~~~~~~i~~--d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~ 538 (805)
.......+++.+.. ....|++++|||.+... .+...-.-.++|++..||..+.+.+..+++....- .--...+.++
T Consensus 583 ~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r-~~~~~~l~~s 661 (897)
T PLN02960 583 VDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQ-EWSMSKIVST 661 (897)
T ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCC-CCChhccEee
Confidence 11222234444433 23457999999986433 22211112245788999988888887777653210 0001123332
Q ss_pred CCccCCCCCCCCceeeecccCCC-----cchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHH-HHHHH
Q 003653 539 PNLYQGGGRKPWNSINFVCAHDG-----FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKK-LRRRQ 612 (805)
Q Consensus 539 ~~~~~~~~~~p~~~vnfv~nHD~-----~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~-~~~~~ 612 (805)
... ....+.+.|+|++|||+ -++.+.+.- .. ..+|. .. +..+.+ .....
T Consensus 662 ~~~---~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g---------~~-------~~k~~-~~-----~~~~lRa~al~~ 716 (897)
T PLN02960 662 LVK---NKENADKMLSYAENHNQSISGGKSFAEILLG---------KN-------KESSP-AV-----KELLLRGVSLHK 716 (897)
T ss_pred ecc---CcCCcceEEEEecCcCccccCcccHHHHCCC---------ch-------hhhhc-cc-----ChhhhhhhhHHH
Confidence 210 12466788999999999 333433320 00 00010 00 000000 00111
Q ss_pred HHHHHHHHHhcCCceEEeccccccCCCC------CCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCcCCC
Q 003653 613 MRNFFLCLMVSQGVPMISMGDEYGHTKG------GNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLG 685 (805)
Q Consensus 613 ~r~a~alllt~pGiP~Iy~GdE~G~~~~------g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~aL~ 685 (805)
+..++++++ .||+||+|||+|||+... +++.+ -+...++|+..+. .+..+++|+|.|++||+++|+|.
T Consensus 717 ~~rllt~~~-~Pg~pLlFMG~EFGh~e~~~~PdP~n~~t----f~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~ 791 (897)
T PLN02960 717 MIRLITFTL-GGSAYLNFMGNEFGHPERVEFPRASNNFS----FSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILS 791 (897)
T ss_pred HHHHHHHHh-CCCCCEeeCccccCChhhhhCcCCCCccc----cccccCCcccccChhHHHHHHHHHHHHHHHhcChhhc
Confidence 222344444 499999999999997431 11111 1235689998654 35789999999999999999997
Q ss_pred CCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCc----EEEEcCCCCCCceEEEecCCCCCCC
Q 003653 686 LSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLP----VIISLPKRPGYRWEPLVDTSKPEPF 761 (805)
Q Consensus 686 ~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~----~~v~Lp~~~g~~w~~v~~t~~~~~~ 761 (805)
.+.... ...+.+.+|++|.| ..++||+|++... ..+.+|. .+.|+.|++|......
T Consensus 792 ~g~~~i-------------~~~d~~~~Viaf~R-----~~llvV~NFsp~~~~~~Y~vgvP~--~G~y~eilNSD~~~yG 851 (897)
T PLN02960 792 RGLPNI-------------HHVNDTSMVISFTR-----GPLLFAFNFHPTNSYEEYEVGVEE--AGEYELILNTDEVKYG 851 (897)
T ss_pred CCccee-------------eeecCCCCEEEEEe-----CCeEEEEeCCCCCcCcCceECCCC--CCcEEEEEeCchhhcC
Confidence 653211 01234578999999 2489999999742 3445552 3599999999775422
Q ss_pred C--ccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEEeCC
Q 003653 762 D--FLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 762 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 801 (805)
+ ..........+...+......+.+++|||+|++||.+.+
T Consensus 852 G~g~~~~~~~~~~t~~~~~~g~~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 852 GQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred CCCccCCCcceeeccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 1 111110000001112334456789999999999998764
No 20
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-61 Score=548.47 Aligned_cols=574 Identities=23% Similarity=0.355 Sum_probs=376.0
Q ss_pred CCCCCCCeEEeCC---eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEc
Q 003653 93 GYPTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (805)
Q Consensus 93 g~~~plGa~~~~~---~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~ 169 (805)
....+|||+.... +|+|+||||+|+.|.|+ ++||+|.. ...+|. ..++.|+|+++||+...|..|+|++.
T Consensus 21 ~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vv----gdfn~w~~-~~~~~~--~~~~~G~we~~vp~~~~G~~Yky~l~ 93 (628)
T COG0296 21 RLYEKLGAHPIENGVSGVRFRVWAPNARRVSLV----GDFNDWDG-RRMPMR--DRKESGIWELFVPGAPPGTRYKYELI 93 (628)
T ss_pred hhHhhhCcccccCCCCceEEEEECCCCCeEEEE----eecCCccc-eecccc--cCCCCceEEEeccCCCCCCeEEEEEe
Confidence 3445789997643 59999999999999999 78887764 345553 23366999999999999999999998
Q ss_pred CccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCCCCCCCC----CCCCCCCCCCCcEEEEEe
Q 003653 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWE----GDLPLKYPQRDLIIYEVH 245 (805)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~w~----~~~~~~~~~~~~vIYei~ 245 (805)
+. .|.. ..+.||||+.... + +...++|.+. .+|.|+ +..+...++++++|||+|
T Consensus 94 ~~----~g~~----~~~~DP~a~~~~~----~---------p~~aS~v~~~-~~y~W~d~~~~~~~~~~~~e~~vIYElH 151 (628)
T COG0296 94 DP----SGQL----RLKADPYARRQEV----G---------PHTASQVVDL-PDYEWQDERWDRAWRGRFWEPIVIYELH 151 (628)
T ss_pred CC----CCce----eeccCchhhccCC----C---------CCCcceecCC-CCcccccccccccccCCCCCCceEEEEE
Confidence 64 4432 4689999987621 1 2234455442 358998 445556678999999999
Q ss_pred eccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCC
Q 003653 246 VRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (805)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt 325 (805)
+.+|+. + ...|++...+++|+|||+||||||+||||.+++. ..+|||+++.||+|.++||+
T Consensus 152 vGs~~~----~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~--------------~~sWGYq~~g~yAp~sryGt 212 (628)
T COG0296 152 VGSFTP----D-RFLGYFELAIELLPYLKELGITHIELMPVAEHPG--------------DRSWGYQGTGYYAPTSRYGT 212 (628)
T ss_pred eeeccC----C-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCC--------------CCCCCCCcceeccccccCCC
Confidence 999998 2 5579999999999999999999999999999873 23699999999999999997
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCC-CCCccccCCCccc-cCC
Q 003653 326 AGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KGEFYNYSGCGNT-FNC 403 (805)
Q Consensus 326 ~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~-~g~~~~~~g~~~~-ln~ 403 (805)
+++||+||++||++||.||||+|+||++.+.. .+..| ++..+|...+ ...+.. .+|.. +|+
T Consensus 213 ----------Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~--~L~~f---dg~~~~e~~~~~~~~~~--~Wg~~i~~~ 275 (628)
T COG0296 213 ----------PEDFKALVDAAHQAGIGVILDWVPNHFPPDGN--YLARF---DGTFLYEHEDPRRGEHT--DWGTAIFNY 275 (628)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc--hhhhc---CCccccccCCcccccCC--Ccccchhcc
Confidence 99999999999999999999999999987532 12233 3344443322 111111 22333 344
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCC-----CccccccccCccccCcccccCCCCCChHHHHHHhc---
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS-----SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--- 475 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~-----~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--- 475 (805)
.+++||+||+++++||+++|||||||+||+..|.... ..|.. +.+|.. + ....++-+.+
T Consensus 276 gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~-n~~ggr----------~--n~~a~efl~~~n~ 342 (628)
T COG0296 276 GRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVP-NEYGGR----------E--NLEAAEFLRNLNS 342 (628)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccc-cccCCc----------c--cHHHHHHhhhhhh
Confidence 5999999999999999999999999999998774321 12222 222221 0 1111121111
Q ss_pred --CCCCCCceeeeeecCCCCcccc-cccCCCCcccccchh-HHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCc
Q 003653 476 --DPILRGVKLIAEAWDTGGLYQV-GIFPHWGIWSEWNGK-YRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWN 551 (805)
Q Consensus 476 --d~~~~~~~ligE~w~~~~~~~~-~~~~~~~~~~~~n~~-f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 551 (805)
....++++.|+|.|........ -.....++...||.. ++|.+..+.+ ..-+.. .-.+.... .....+..
T Consensus 343 ~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~-~~~~r~----~~h~~~tf--~~~y~~se 415 (628)
T COG0296 343 LIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGK-DPVYRK----YHHGELTF--GLLYAFSE 415 (628)
T ss_pred hhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhccc-Cccccc----cccCCCcc--ccccccce
Confidence 2345688999999876422111 111223466677865 4444443322 110100 00011000 00134567
Q ss_pred eeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEec
Q 003653 552 SINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISM 631 (805)
Q Consensus 552 ~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~ 631 (805)
.+.|..|||+.- . .+.+.++++. | ......+.+|+++++++++||+|+|||
T Consensus 416 ~~~l~~sHDevv-----h----Gk~sl~~rm~-----------g---------~~~~~~a~lr~~~a~~~~~Pgk~LLFM 466 (628)
T COG0296 416 NVVLPLSHDEVV-----H----GKRSLGERMP-----------G---------DAWQKFANLRALAAYMWLHPGKPLLFM 466 (628)
T ss_pred eEecccccccee-----e----cccchhccCC-----------c---------chhhhHHHHHHHHHHHHhCCCceeeec
Confidence 788999999851 0 1122222210 0 012346788999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCcccC---C--hhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCC
Q 003653 632 GDEYGHTKGGNNNTYCHDNDINYFRWDKKEE---S--KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPD 706 (805)
Q Consensus 632 GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~---~--~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~ 706 (805)
|+|||.....+. ...++|..... . .+.+.++.+.|.++-+..+++...++.. +.+.|....
T Consensus 467 G~Efgq~~e~~~--------~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~-~~~~W~~~~----- 532 (628)
T COG0296 467 GEEFGQGREWNF--------FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQP-EGFEWIDAD----- 532 (628)
T ss_pred chhhccCCCCcc--------cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcc-cCCceeecC-----
Confidence 999999865432 33467744332 1 4788889998988888889998877654 456664321
Q ss_pred CCCCCcEEEEEEE-c-CCCCEEEEEEeCCCCcE-EEEcCCCCCCceEEEecCCCCCCCCccC--CC--Cchhhhhhhhcc
Q 003653 707 WSDKSRFVAFTLI-D-SVKGEIYVAFNASHLPV-IISLPKRPGYRWEPLVDTSKPEPFDFLS--SD--LPAKEIAIKQYA 779 (805)
Q Consensus 707 ~~~~~~vlaf~R~-~-~~~~~~~Vv~N~~~~~~-~v~Lp~~~g~~w~~v~~t~~~~~~~~~~--~~--~~~~~~~~~~~~ 779 (805)
+....+++|.|. . ...+.++|+.|++..+. .+.++...++.|+.+++|.......... .+ +++.... ..
T Consensus 533 -~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~---~~ 608 (628)
T COG0296 533 -DAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDIL---WH 608 (628)
T ss_pred -chhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEeccchHHHhcCCccccccceecceeee---cc
Confidence 123379999995 2 33345778888776443 3444432445899999985543322211 11 1111111 01
Q ss_pred CCCCceeEEeeCCeEEEEE
Q 003653 780 PFLDANLYPMLSYSSIILL 798 (805)
Q Consensus 780 ~~~~~~~~~v~~~s~~vl~ 798 (805)
...-+..+++||.+++||.
T Consensus 609 ~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 609 GREWSLSLTLPPLAALVLK 627 (628)
T ss_pred CcceeeEEecCCceeeEee
Confidence 1223578999999999985
No 21
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.8e-58 Score=532.13 Aligned_cols=453 Identities=20% Similarity=0.301 Sum_probs=308.0
Q ss_pred CCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccc
Q 003653 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (805)
Q Consensus 235 ~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (805)
+|++.|||||++++|.+++. ...|||+|++++|+||++||||+|||+||++.+. ..|||++.
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~---~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~---------------~~~gY~~~ 68 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTG---SGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQ---------------VDNGYDVA 68 (551)
T ss_pred hhhcCeEEEEEchHhhcCCC---CCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCC---------------CCCCCCcc
Confidence 67899999999999988543 4479999999999999999999999999997532 13899999
Q ss_pred cccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCC------
Q 003653 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK------ 388 (805)
Q Consensus 315 ~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~------ 388 (805)
||++++++||| .++|++||++||++||+||||+|+||++..|+|.....-+......||.+.+.
T Consensus 69 d~~~id~~~Gt----------~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~ 138 (551)
T PRK10933 69 NYTAIDPTYGT----------LDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPP 138 (551)
T ss_pred cCCCcCcccCC----------HHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCC
Confidence 99999999997 89999999999999999999999999999887643221111122345543210
Q ss_pred ------------------CCcc--ccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccc
Q 003653 389 ------------------GEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 448 (805)
Q Consensus 389 ------------------g~~~--~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~ 448 (805)
+.++ .|....++||++||+||++|++++++|+ ++||||||||+|+++.+...||+....
T Consensus 139 ~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~ 217 (551)
T PRK10933 139 NNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDG 217 (551)
T ss_pred CcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCccc
Confidence 0011 1123468999999999999999999999 799999999999999877677764210
Q ss_pred cCccccCcccccCCCCCChHHHHHHhcCC-CCCCceeeeeecCCCCcccccc---cCCCCcccccchhHHHHHHHHHhCC
Q 003653 449 YGIPIEGDLLTTGTPLRSPPLIDLISNDP-ILRGVKLIAEAWDTGGLYQVGI---FPHWGIWSEWNGKYRDIVRQFIKGT 524 (805)
Q Consensus 449 ~g~~~~~~~~~~g~~~~~~~~~~~i~~d~-~~~~~~ligE~w~~~~~~~~~~---~~~~~~~~~~n~~f~~~lr~~~~g~ 524 (805)
-+. .....+ + ....+++.++..- ..++++++||.|.... ..... .....++..+| |......++.|.
T Consensus 218 ~~~----~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~-~~~~~y~~~~~~~~~~~fn--f~~~~~~~~~~~ 288 (551)
T PRK10933 218 DGR----RFYTDG-P-RAHEFLQEMNRDVFTPRGLMTVGEMSSTSL-EHCQRYAALTGSELSMTFN--FHHLKVDYPNGE 288 (551)
T ss_pred ccc----cccCCC-h-HHHHHHHHHHHHhhcccCcEEEEeecCCCH-HHHHHhhcccCCeeeeEec--HHHhhhhhccCC
Confidence 000 000000 0 1123555554321 1235789999985321 00000 01111333444 444444554442
Q ss_pred CC-----cHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCc
Q 003653 525 DG-----FAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGE 599 (805)
Q Consensus 525 ~~-----~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~ 599 (805)
.. ....+...+....... .......+|++|||+.|+.+.+. .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~fl~NHD~~R~~sr~g--------------------------~~~- 337 (551)
T PRK10933 289 KWTLAKPDFVALKTLFRHWQQGM----HNVAWNALFWCNHDQPRIVSRFG--------------------------DEG- 337 (551)
T ss_pred cccccccCHHHHHHHHHHHHHhh----cccCeeccccCCCCcccHHHHcC--------------------------Cch-
Confidence 21 1223333332111111 11123456999999999877552 100
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCC----------------------CC---------CCCC
Q 003653 600 FANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGN----------------------NN---------TYCH 648 (805)
Q Consensus 600 ~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~----------------------~n---------~y~~ 648 (805)
..+...++++++++||+||+|+||||||+||++..- .+ .-.+
T Consensus 338 -------~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 410 (551)
T PRK10933 338 -------EYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSR 410 (551)
T ss_pred -------hHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCC
Confidence 123445778888999999999999999999987310 00 1135
Q ss_pred CCCcccccCCcccC--------------------------ChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCC
Q 003653 649 DNDINYFRWDKKEE--------------------------SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAP 702 (805)
Q Consensus 649 d~~~~~~~W~~~~~--------------------------~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~ 702 (805)
+..|.+|+|+.... ++.++++|||+||+|||++|+|+.|++..+
T Consensus 411 d~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~---------- 480 (551)
T PRK10933 411 DNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL---------- 480 (551)
T ss_pred CCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe----------
Confidence 56799999987541 236799999999999999999999987541
Q ss_pred CCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCC
Q 003653 703 GLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFL 782 (805)
Q Consensus 703 ~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (805)
...+..+++|.|...+ +.++||+|++.+++.+++|... +.|+.++++.... . .
T Consensus 481 ----~~~~~~v~af~R~~~~-~~~lvv~N~s~~~~~~~~~~~~-~~~~~~l~~~~~~----~--~--------------- 533 (551)
T PRK10933 481 ----LPNHPSLWCYRREWQG-QTLLVIANLSREPQPWQPGQMR-GNWQLLMHNYEEA----S--P--------------- 533 (551)
T ss_pred ----ccCCCcEEEEEEEcCC-cEEEEEEECCCCCeeeecCccc-CCceEEeecCccc----c--C---------------
Confidence 1224579999998875 8999999999999999988432 3788877652110 0 0
Q ss_pred CceeEEeeCCeEEEEEeC
Q 003653 783 DANLYPMLSYSSIILLLS 800 (805)
Q Consensus 783 ~~~~~~v~~~s~~vl~~~ 800 (805)
....++|+|++++|+.++
T Consensus 534 ~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 534 QPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred CCCcEEECCCeEEEEEeC
Confidence 013488999999999764
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.9e-58 Score=534.41 Aligned_cols=452 Identities=20% Similarity=0.280 Sum_probs=303.9
Q ss_pred CCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccc
Q 003653 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (805)
Q Consensus 235 ~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (805)
+|++.|||||++++|++++. ...|+|+|++++|+||++||||+|||+||++.++ +.+||++.
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~---~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~---------------~~~gY~~~ 62 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTG---DGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ---------------KDNGYDVS 62 (543)
T ss_pred CcccCEEEEEEhHHHhcCCC---CCccCHHHHHHhHHHHHHcCCCEEEECCcccCCC---------------CCCCCCcc
Confidence 46899999999999987443 4479999999999999999999999999998643 23799999
Q ss_pred cccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCC-C-----
Q 003653 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-K----- 388 (805)
Q Consensus 315 ~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~-~----- 388 (805)
||+.++++||| .++|++||++||++||+||||+|+||++.+|+|.....-.......||.+.+ .
T Consensus 63 d~~~id~~~Gt----------~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~ 132 (543)
T TIGR02403 63 DYYAINPLFGT----------MADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPT 132 (543)
T ss_pred ccCccCcccCC----------HHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCC
Confidence 99999999997 8999999999999999999999999999887653211101112234443321 1
Q ss_pred -----------------CCcc--ccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCcccccccc
Q 003653 389 -----------------GEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVY 449 (805)
Q Consensus 389 -----------------g~~~--~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~ 449 (805)
+.++ .|....++||++||+||++|++++++|+ ++||||||||+|++|.+...+|+....
T Consensus 133 ~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~- 210 (543)
T TIGR02403 133 NWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIG- 210 (543)
T ss_pred cccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCC-
Confidence 1111 1233568999999999999999999999 589999999999999765555543100
Q ss_pred CccccCcccccCCCCCChHHHHHHhcC-CCCCCceeeeeecCCCCcccc-c-ccCCCCcccccchhHHHHHHHHHhCCC-
Q 003653 450 GIPIEGDLLTTGTPLRSPPLIDLISND-PILRGVKLIAEAWDTGGLYQV-G-IFPHWGIWSEWNGKYRDIVRQFIKGTD- 525 (805)
Q Consensus 450 g~~~~~~~~~~g~~~~~~~~~~~i~~d-~~~~~~~ligE~w~~~~~~~~-~-~~~~~~~~~~~n~~f~~~lr~~~~g~~- 525 (805)
.+.......+ ....+++.++.. ...+++++|||.|........ . ......+++.+| |......+..+..
T Consensus 211 ----~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~ 283 (543)
T TIGR02403 211 ----DGRRFYTDGP-RVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKW 283 (543)
T ss_pred ----CCccccCCCh-HHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEC--hhhhhchhcccccc
Confidence 0000000000 012244444321 014589999999864311000 0 000112455566 4444444443321
Q ss_pred ----CcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcch
Q 003653 526 ----GFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFA 601 (805)
Q Consensus 526 ----~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~ 601 (805)
.....+...+......+. ......++|++|||+.|+...+.. ..
T Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~fl~NHD~~R~~s~~g~--------------------------~~--- 331 (543)
T TIGR02403 284 TLAKFDFAKLKEIFSTWQTGMQ---AGGGWNALFWNNHDQPRAVSRFGD--------------------------DG--- 331 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHhcc---ccCcceeeecCCCChhhHHHhcCC--------------------------ch---
Confidence 112334333322111111 012234579999999998776520 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCC-------------------------------CCCCCCC
Q 003653 602 NILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNN-------------------------------NTYCHDN 650 (805)
Q Consensus 602 ~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~-------------------------------n~y~~d~ 650 (805)
..+.+.+|++++++||+||+||||||||+||++.... +...+++
T Consensus 332 -----~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~ 406 (543)
T TIGR02403 332 -----EYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDN 406 (543)
T ss_pred -----hhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCC
Confidence 1123457788889999999999999999999864210 0123456
Q ss_pred CcccccCCccc--------------------------CChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCC
Q 003653 651 DINYFRWDKKE--------------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGL 704 (805)
Q Consensus 651 ~~~~~~W~~~~--------------------------~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~ 704 (805)
.|.+|+|+... .++.++++|||+||+|||++|+|+.|++..+
T Consensus 407 ~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~------------ 474 (543)
T TIGR02403 407 SRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL------------ 474 (543)
T ss_pred CccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe------------
Confidence 78999998642 1247899999999999999999999987551
Q ss_pred CCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCc
Q 003653 705 PDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDA 784 (805)
Q Consensus 705 ~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (805)
...++++++|.|..+. +.++||+|++.+++++.||... ..|..++.+.... . ..
T Consensus 475 --~~~~~~v~a~~R~~~~-~~~lVv~N~s~~~~~~~l~~~~-~~~~~~~~~~~~~-------~---------------~~ 528 (543)
T TIGR02403 475 --LPDDPSVWAYTRTYKN-QKLLVINNFYGEEKTIELPLDL-LSGKILLSNYEEA-------E---------------KD 528 (543)
T ss_pred --ecCCCcEEEEEEEcCC-cEEEEEEECCCCCeEeeCCccC-cCceEEEecCCCc-------C---------------CC
Confidence 1123479999998875 8899999999999999998643 2566666542211 0 01
Q ss_pred eeEEeeCCeEEEEE
Q 003653 785 NLYPMLSYSSIILL 798 (805)
Q Consensus 785 ~~~~v~~~s~~vl~ 798 (805)
..++|+|++++|+.
T Consensus 529 ~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 529 AKLELKPYEAIVLL 542 (543)
T ss_pred CcEEECCceEEEEe
Confidence 56899999999984
No 23
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=4e-58 Score=532.95 Aligned_cols=460 Identities=21% Similarity=0.285 Sum_probs=296.7
Q ss_pred CCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccc
Q 003653 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTI 314 (805)
Q Consensus 235 ~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~ 314 (805)
+++++|||||+|++|++++. ..+|||+||+++|||||+||||+|||+||++.+. .+|||++.
T Consensus 2 W~~~~viYqi~~~~f~d~~~---~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~---------------~~~gY~~~ 63 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNG---DGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPL---------------RDDGYDVS 63 (539)
T ss_pred ccccceEEEEehhHhhcCCC---CCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCC---------------CCCCCCcc
Confidence 46899999999999998653 3479999999999999999999999999998542 24999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccc-cCCCCCccceeeCCCC----
Q 003653 315 NYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS-FRGVDNSVYYMLAPKG---- 389 (805)
Q Consensus 315 ~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~-~~~~~~~~yy~~~~~g---- 389 (805)
||++++++||+ .++||+||++||++||+||||+|+||++.+++|..... ........||.+.+.+
T Consensus 64 dy~~vd~~~Gt----------~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (539)
T TIGR02456 64 DYRAILPEFGT----------IDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYK 133 (539)
T ss_pred cccccChhhCC----------HHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccc
Confidence 99999999997 89999999999999999999999999998876532110 0011123445432111
Q ss_pred ---------------------Ccc--ccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCC------
Q 003653 390 ---------------------EFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS------ 440 (805)
Q Consensus 390 ---------------------~~~--~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~------ 440 (805)
.++ .+....++||+++|+||++|++++++|+ ++||||||||+++++.+..
T Consensus 134 ~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~ 212 (539)
T TIGR02456 134 DTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCEN 212 (539)
T ss_pred cccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCC
Confidence 100 1234568999999999999999999999 5999999999999885321
Q ss_pred -----CccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeecCCCCc--ccccccCCCCcccccchhH
Q 003653 441 -----SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL--YQVGIFPHWGIWSEWNGKY 513 (805)
Q Consensus 441 -----~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w~~~~~--~~~~~~~~~~~~~~~n~~f 513 (805)
+||+. +.+.++. ..|++++|||.|..... ...+.....+++..+|..+
T Consensus 213 ~p~~~~f~~~-----------------------~~~~v~~--~~p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l 267 (539)
T TIGR02456 213 LPETHEFLKR-----------------------LRKMVDR--EYPGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPV 267 (539)
T ss_pred CchHHHHHHH-----------------------HHHHHHH--hCCCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhh
Confidence 12221 2333332 34689999997532110 0011111113556677666
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhccccccc-CCCCCCCCCCCCCCC
Q 003653 514 RDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA-NGEDNNDGETHNNSW 592 (805)
Q Consensus 514 ~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~-~ge~~~dg~~~n~sw 592 (805)
...+...+.. .....+...+...+. + ......++|++|||..++..+......+-.+ .+. + ....-
T Consensus 268 ~~~~~~~l~~--~~~~~l~~~l~~~~~-~----~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~ 334 (539)
T TIGR02456 268 MPRIFMALRR--EDRSPIIDILKETPD-I----PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAP-D-----PRMRI 334 (539)
T ss_pred hhhhhccccc--CCHHHHHHHHHHhhh-c----cCCCceeeecCCCCccCccccChhhhhhhhhhccC-C-----cchhc
Confidence 5444322221 112334433332221 1 1233457899999997742111000000000 000 0 00000
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCccc-----------
Q 003653 593 NCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE----------- 661 (805)
Q Consensus 593 ~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~----------- 661 (805)
+.+........ .....+++++|++++||+||+|+||||||+|+.+... ....+..|.+|+|+...
T Consensus 335 ~~~~~~R~~s~--~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~ 410 (539)
T TIGR02456 335 NLGIRRRLAPL--LDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQ 410 (539)
T ss_pred ccchhhhhhhc--ccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcc
Confidence 00000000000 0001456889999999999999999999999975211 11223456789997531
Q ss_pred ----------------------CChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEE
Q 003653 662 ----------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI 719 (805)
Q Consensus 662 ----------------------~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~ 719 (805)
....++++|||+||+|||++++|+.|++..+ ..+++++++|.|.
T Consensus 411 ~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l--------------~~~~~~v~~f~R~ 476 (539)
T TIGR02456 411 LFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFL--------------PTGNRRVLAFLRE 476 (539)
T ss_pred cccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEE--------------ecCCCCEEEEEEE
Confidence 1236799999999999999999999986551 1224579999998
Q ss_pred cCCCCEEEEEEeCCCCcEEEEcCCCC--CCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEE
Q 003653 720 DSVKGEIYVAFNASHLPVIISLPKRP--GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 797 (805)
Q Consensus 720 ~~~~~~~~Vv~N~~~~~~~v~Lp~~~--g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 797 (805)
.++ +.++||+|++.++++++|+... +..|.+++.+... + ++ .....+++|+|+++++|
T Consensus 477 ~~~-~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~----------~----~~-----~~~~~~~~l~p~~~~~~ 536 (539)
T TIGR02456 477 YEG-ERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPF----------P----PV-----GGDGYLLTLGPHGFYWF 536 (539)
T ss_pred cCC-cEEEEEEeCCCCCEEeeccccccccCcceecccCCcc----------c----cc-----cCCcceEEECCceEEEE
Confidence 875 8999999999999999987632 3345555432210 0 00 01235799999999998
Q ss_pred Ee
Q 003653 798 LL 799 (805)
Q Consensus 798 ~~ 799 (805)
-+
T Consensus 537 ~~ 538 (539)
T TIGR02456 537 RL 538 (539)
T ss_pred Ee
Confidence 63
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=3.1e-55 Score=510.77 Aligned_cols=404 Identities=19% Similarity=0.283 Sum_probs=271.6
Q ss_pred CCCCCCCCcEEEEEeeccccccCCCCC---------------CCCcChhhhccchhHHHHcCCceEEECcccccCccccc
Q 003653 231 PLKYPQRDLIIYEVHVRGFTRHESSKT---------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295 (805)
Q Consensus 231 ~~~~~~~~~vIYei~v~~Ft~~~~s~~---------------~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~ 295 (805)
+.+..|++++||+|++++|.+++++++ .++|||+||+++|+|||+||||+|||+||++.......
T Consensus 182 ~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~ 261 (683)
T PRK09505 182 AAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVG 261 (683)
T ss_pred CCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccccc
Confidence 445578899999999999998886543 24799999999999999999999999999986431110
Q ss_pred ccCCcCCCC-CcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCC-CCCccc
Q 003653 296 SYNSVLGDY-KVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND-KGPILS 373 (805)
Q Consensus 296 ~~~~~~~~~-~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~-~~~~~~ 373 (805)
.+..++. .+.||||++.||+.++++||+ .+|||+||++||++||+||||+|+||++..+. +...+.
T Consensus 262 --~g~~g~~~~~~yhgY~~~D~~~id~~~Gt----------~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~ 329 (683)
T PRK09505 262 --GGTKGDFPHYAYHGYYTLDWTKLDANMGT----------EADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQ 329 (683)
T ss_pred --cccccCCCcCCCCCCCccccccCCCCCCC----------HHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccc
Confidence 0001111 246799999999999999997 99999999999999999999999999984310 000000
Q ss_pred cCC----------CCCccceeeC-----------------CCCCccccCC------------------------CccccC
Q 003653 374 FRG----------VDNSVYYMLA-----------------PKGEFYNYSG------------------------CGNTFN 402 (805)
Q Consensus 374 ~~~----------~~~~~yy~~~-----------------~~g~~~~~~g------------------------~~~~ln 402 (805)
|.. ..++.|+.+. ....+..|+| .-++||
T Consensus 330 f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~ 409 (683)
T PRK09505 330 FGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK 409 (683)
T ss_pred hhhhhhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCccc
Confidence 000 0111111111 0111122221 124455
Q ss_pred CC-----------------------CHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccc
Q 003653 403 CN-----------------------HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLT 459 (805)
Q Consensus 403 ~~-----------------------~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~ 459 (805)
.+ ||+||++|++++++|++++||||||+|++++++. +||..++...
T Consensus 410 te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~--~FW~~~~~~~--------- 478 (683)
T PRK09505 410 TESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVEL--PAWQQLKQEA--------- 478 (683)
T ss_pred ccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCH--HHHHHHHHHH---------
Confidence 54 5699999999999999999999999999999975 6787632100
Q ss_pred cCCCCCChHHHHHHh-cCC----CCCCceeeeeecCCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHH
Q 003653 460 TGTPLRSPPLIDLIS-NDP----ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAEC 534 (805)
Q Consensus 460 ~g~~~~~~~~~~~i~-~d~----~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~ 534 (805)
...+...+ ..+ ..+++.++||.|..+... ...+. .++++.+|+.|...+...+.. ...+...
T Consensus 479 -------~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~-~~y~~-~~fDsv~NF~~~~~~~~~~~~----~~~l~~~ 545 (683)
T PRK09505 479 -------SAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK-SDYYR-HGFDAMINFDYQEQAAKAVDC----LAQMDPT 545 (683)
T ss_pred -------HHHHHHHHHhccccccccCCeEEEEEecCCchhh-HHHHh-hcCccccCchHHHHHHHHHHH----HHHHHHH
Confidence 00011111 111 123588999999654211 11111 257888998888766544331 1111111
Q ss_pred HhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 003653 535 LCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 614 (805)
Q Consensus 535 l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r 614 (805)
....... ......++|++|||+.|+.+... . ..++|
T Consensus 546 ~~~~~~~-----~~~~~~l~FLdNHDt~Rf~s~~~--------------------------~-------------~~~~k 581 (683)
T PRK09505 546 YQQMAEK-----LQDFNVLSYLSSHDTRLFFEGGQ--------------------------S-------------YAKQR 581 (683)
T ss_pred HHHHhhh-----cCccceeecccCCChhhhhhhcC--------------------------c-------------hHHHH
Confidence 1110000 12235689999999998765431 0 13467
Q ss_pred HHHHHHHhcCCceEEeccccccCCCCCC-CCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCcc
Q 003653 615 NFFLCLMVSQGVPMISMGDEYGHTKGGN-NNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTAD 693 (805)
Q Consensus 615 ~a~alllt~pGiP~Iy~GdE~G~~~~g~-~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~ 693 (805)
+|++++||+||+|+||||||+|+++... .++ ..+.|..|+|+.......++++|+|+|++||++||+|+.|++..+
T Consensus 582 lAaall~tlpGiP~IYYGdEiGm~gg~~g~DP--~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l- 658 (683)
T PRK09505 582 RAAELLLLAPGAVQIYYGDESARPFGPTGSDP--LQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL- 658 (683)
T ss_pred HHHHHHHhCCCCcEEEechhhCccCCCCCCCC--cccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe-
Confidence 8999999999999999999999975321 111 123678899986544447899999999999999999999986541
Q ss_pred ceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCC
Q 003653 694 RLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNAS 733 (805)
Q Consensus 694 ~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~ 733 (805)
..+.+++|.|..+. +.++||+|..
T Consensus 659 ---------------~~~~~~aF~R~~~~-d~vlVv~~~~ 682 (683)
T PRK09505 659 ---------------SLKQYYAFVREHGD-DKVMVVWAGQ 682 (683)
T ss_pred ---------------ccCCEEEEEEEeCC-CEEEEEEeCC
Confidence 13579999998875 8899999864
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=4.5e-50 Score=460.10 Aligned_cols=386 Identities=17% Similarity=0.228 Sum_probs=259.5
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccccc---------CCCCCCCCCCCCCC
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF---------SPMISYSSAGIRNC 331 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~---------~~~~~ygt~~~~~~ 331 (805)
.+|++|+++||||++||||+|||+||++..+ ...+|||++.||| .|+++|||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~-------------~~~~hgY~~~D~~~~~~~~~~~~id~~fGt------ 79 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTS-------------GGYDVGYGVYDLFDLGEFDQKGTVRTKYGT------ 79 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCC-------------CCCCCCCCeecccccccccccCCcCcCcCC------
Confidence 4577999999999999999999999999642 1135999999999 68999997
Q ss_pred CCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCC--CCC---------------cc---cc-----CCCCC------c
Q 003653 332 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KGP---------------IL---SF-----RGVDN------S 380 (805)
Q Consensus 332 ~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~--~~~---------------~~---~~-----~~~~~------~ 380 (805)
.+|||+||++||++||+||+|+|+||++.++. +.+ .. .+ .+.+. .
T Consensus 80 ----~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (479)
T PRK09441 80 ----KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKW 155 (479)
T ss_pred ----HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCccee
Confidence 99999999999999999999999999985432 211 00 00 00000 0
Q ss_pred cceeeCCC---------CCc------cccCC------------CccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccc
Q 003653 381 VYYMLAPK---------GEF------YNYSG------------CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433 (805)
Q Consensus 381 ~yy~~~~~---------g~~------~~~~g------------~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a 433 (805)
.|+...+. +.+ ..|.+ ..++||+++|+|+++|++++++|++++||||||+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 156 HWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred CCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 12211110 000 11211 1469999999999999999999998899999999999
Q ss_pred cccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeecCCCCc----ccccccCCCCccccc
Q 003653 434 SIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL----YQVGIFPHWGIWSEW 509 (805)
Q Consensus 434 ~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w~~~~~----~~~~~~~~~~~~~~~ 509 (805)
++++. .||.. +.+++++. ..++++++||.|..... +... .. ...+.+
T Consensus 236 k~v~~--~f~~~-----------------------~~~~~~~~-~~~~~~~vGE~~~~~~~~~~~y~~~-~~--~~~~~~ 286 (479)
T PRK09441 236 KHIDA--WFIKE-----------------------WIEHVREV-AGKDLFIVGEYWSHDVDKLQDYLEQ-VE--GKTDLF 286 (479)
T ss_pred cCCCH--HHHHH-----------------------HHHHHHHh-cCCCeEEEEeecCCChHHHHHHHHh-cC--CCceEe
Confidence 99975 56654 44555432 12478999999975421 1110 00 122466
Q ss_pred chhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCC
Q 003653 510 NGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHN 589 (805)
Q Consensus 510 n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n 589 (805)
+..+...++..+.+.. ...+...+.... . ...+..++||++|||+.|+..+...
T Consensus 287 Df~~~~~l~~~~~~~~--~~~l~~~~~~~~-~----~~~~~~~~~FldNHD~~R~~~~~~~------------------- 340 (479)
T PRK09441 287 DVPLHYNFHEASKQGR--DYDMRNIFDGTL-V----EADPFHAVTFVDNHDTQPGQALESP------------------- 340 (479)
T ss_pred cHHHHHHHHHHHhcCC--ccchHhhhCcch-h----hcCcccceeeeccccCCCccccccc-------------------
Confidence 7777777777766421 123333332111 1 1345678999999999987543210
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC-CceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHH
Q 003653 590 NSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFF 668 (805)
Q Consensus 590 ~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~p-GiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~ 668 (805)
...+..++|++++||+| |+||||||+|+|+.+... . ..++
T Consensus 341 ------------------~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~--------------------~-~~l~ 381 (479)
T PRK09441 341 ------------------VEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYI--------------------D-MPFK 381 (479)
T ss_pred ------------------ccccchHHHHHHHHhCCCCceeeEeccccCCCCCcc--------------------c-chHH
Confidence 00122468999999999 999999999999864311 1 5689
Q ss_pred HHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCC-CEEEEEEeCCC-CcEEEEcCCC-C
Q 003653 669 RFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVK-GEIYVAFNASH-LPVIISLPKR-P 745 (805)
Q Consensus 669 ~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~-~~~~Vv~N~~~-~~~~v~Lp~~-~ 745 (805)
+++++||+|||+++ .|++.. +..++++++|.|..... +.++||+|.+. ...+++++.. +
T Consensus 382 ~~i~~Li~lRk~~~---~G~~~~---------------~~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~ 443 (479)
T PRK09441 382 EKLDKLLLARKNFA---YGEQTD---------------YFDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGENYA 443 (479)
T ss_pred HHHHHHHHHHHHhC---CCCeeE---------------eecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCccCC
Confidence 99999999999853 454432 22356899999987642 46888887765 3445777652 3
Q ss_pred CCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEE
Q 003653 746 GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 798 (805)
Q Consensus 746 g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 798 (805)
+..|++++..... .+... ..+..+++|||.|++||+
T Consensus 444 ~~~~~d~~~~~~~---~~~~~--------------~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 444 GKTWRDYTGNRQE---TVTID--------------EDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred CCEeEhhhCCCCC---eEEEC--------------CCCeEEEEECCceEEEeC
Confidence 5678887754221 11100 023468999999999985
No 26
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=6.5e-44 Score=405.01 Aligned_cols=515 Identities=18% Similarity=0.219 Sum_probs=324.2
Q ss_pred CCCCCEEEEEEcCCCCCceeeEEEcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccCCC--C
Q 003653 145 NKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--D 222 (805)
Q Consensus 145 ~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~ 222 (805)
...+++|...++...++..|+..+... +|. .+ -+.++++.+..... +. ...+++..+. .
T Consensus 326 ~~~~~w~~~~~~~i~H~s~~k~~~~~~----~g~-~~----RiPaw~~~~~~~~~-~~---------~~~~~~w~P~~~~ 386 (872)
T PLN03244 326 KGRKAWLKKYIPAIPHGSKYRLYFNTP----DGP-LE----RIPAWATYVLPDDD-GK---------QAFAIHWEPPPEA 386 (872)
T ss_pred cccCceeecccCCCCCCCeEEEEEEcC----CCC-cc----cCCCCeeeEEecCC-CC---------ceeeeEeCCCccc
Confidence 346689999999999999999998642 232 12 14667766643311 10 1223343332 3
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCC
Q 003653 223 EFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLG 302 (805)
Q Consensus 223 ~~~w~~~~~~~~~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~ 302 (805)
.|.|....|++ ...+.|||.||.-.+ .....|||+.++++
T Consensus 387 ~y~~k~~~p~~--p~~lrIYE~HvGms~-----~e~kv~ty~eF~~~--------------------------------- 426 (872)
T PLN03244 387 AHKWKNMKPKV--PESLRIYECHVGISG-----SEPKISSFEEFTEK--------------------------------- 426 (872)
T ss_pred CCccCCCCCCC--CCCceEEEEEeeecC-----CCCCcccHHHHhhc---------------------------------
Confidence 58898765543 367799999998644 34457999999875
Q ss_pred CCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccc
Q 003653 303 DYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVY 382 (805)
Q Consensus 303 ~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~y 382 (805)
+.+||+|+++||+ ++|||+||++||++||+||||||+||++.+...+ +..|+|.. ..|
T Consensus 427 ----------vt~fFApssRYGT----------PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDGt~-~~Y 484 (872)
T PLN03244 427 ----------VTNFFAASSRYGT----------PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGSN-DCY 484 (872)
T ss_pred ----------cCcccccCcccCC----------HHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCCCc-cce
Confidence 2478999999997 9999999999999999999999999999875433 34455533 356
Q ss_pred eeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEcccccc-ccCCCccccccccCccccCcccccC
Q 003653 383 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM-TRGSSLWDSVNVYGIPIEGDLLTTG 461 (805)
Q Consensus 383 y~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l-~~~~~~w~~~~~~g~~~~~~~~~~g 461 (805)
|...+.|.. ..+|+ ..+|+.+++||++|+++++||++||||||||||++..| ..+++. ..+..-+. +.....
T Consensus 485 f~~~~~g~~-~~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~-~y~n~~--- 557 (872)
T PLN03244 485 FHTGKRGHH-KHWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLD-DYCNQY--- 557 (872)
T ss_pred eccCCCCcc-CCCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCcc-cccccc---
Confidence 665555543 44566 68999999999999999999999999999999988544 332221 00000000 000000
Q ss_pred CCCCChHHHHHHhc--CCCCCCceeeeeecCCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCc---HHHHHHHH
Q 003653 462 TPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGF---AGAFAECL 535 (805)
Q Consensus 462 ~~~~~~~~~~~i~~--d~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~---~~~~~~~l 535 (805)
.......++..+.. ....|++++|||..... ++...-...+.||+..||..+.+....+++-.... ...+...|
T Consensus 558 ~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL 637 (872)
T PLN03244 558 VDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTL 637 (872)
T ss_pred CCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhh
Confidence 11122223333322 22457999999986543 22222222346799999999988888888764322 23333333
Q ss_pred hCCCCccCCCCCCCCceeeecccCCCc-----chHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHH
Q 003653 536 CGSPNLYQGGGRKPWNSINFVCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRR 610 (805)
Q Consensus 536 ~~~~~~~~~~~~~p~~~vnfv~nHD~~-----rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~ 610 (805)
..+. +....+|+|.+|||+. |+...+. +... .+..+. ...+.+ +.
T Consensus 638 ~~nr-------r~~ek~~aYsESHDqaLvGdKTlaf~l~---------d~~~--------y~~~~~-----~~vv~R-g~ 687 (872)
T PLN03244 638 IANK-------EYADKMLSYAENHNQSISGGRSFAEILF---------GAID--------EDPLGG-----KELLDR-GC 687 (872)
T ss_pred hccc-------CCcceEEEEecccceeccccchHHhhhc---------cccc--------cccccc-----chhhhh-hh
Confidence 2111 2345789999999983 2222221 0000 011100 011111 12
Q ss_pred HHHHHHHHHHHhcCCce-EEeccccccCCC------CCCCCCCCCCCCcccccCCcccC-ChhHHHHHHHHHHHHHhhCc
Q 003653 611 RQMRNFFLCLMVSQGVP-MISMGDEYGHTK------GGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECE 682 (805)
Q Consensus 611 ~~~r~a~alllt~pGiP-~Iy~GdE~G~~~------~g~~n~y~~d~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~~ 682 (805)
+..|++-+++++++|.| ++|||+|||+.. .||+.+|. ....+|+..+. ..+.|.+|+|.|++|+++++
T Consensus 688 aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~----~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~ 763 (872)
T PLN03244 688 SLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFS----LANRCWDLLENEVHHHLFSFDKDLMDLDENEG 763 (872)
T ss_pred HHHHHHHHHHHHccCccceeecccccCCchheeccccCCCcccc----ccccCccccCChhHHHHHHHHHHHHHHHhcCc
Confidence 23444556688899988 799999999965 34444432 23578997653 24789999999999999999
Q ss_pred CCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCC-c---EEEEcCCCCCCceEEEecCCCC
Q 003653 683 SLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL-P---VIISLPKRPGYRWEPLVDTSKP 758 (805)
Q Consensus 683 aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~-~---~~v~Lp~~~g~~w~~v~~t~~~ 758 (805)
+|..+-. . |. ..+++++||||.|. .++||+|++.. + ..|.+|. .+.|+.|++|...
T Consensus 764 aL~~gf~-w---I~---------~~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~--~G~Y~eILNSD~~ 823 (872)
T PLN03244 764 ILSRGLP-N---IH---------HVKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGVEE--AGEYQIILNSDET 823 (872)
T ss_pred ccccCCc-E---Ee---------eecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECCCC--CCeEEEEEeCChh
Confidence 9975421 1 11 12446789999994 48999999974 2 3454543 4599999999876
Q ss_pred CCCCccCCCCchhhh--hhhhccCCCCceeEEeeCCeEEEEEeCC
Q 003653 759 EPFDFLSSDLPAKEI--AIKQYAPFLDANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 759 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 801 (805)
...+.-........+ .-.....+..+..+.|||++++||-..+
T Consensus 824 ~FGG~g~~~~~~~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 824 KYGGQGIIEEDHYLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred hhCCCCccCCCceeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 433221111000000 1111234456789999999999998764
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.1e-43 Score=392.73 Aligned_cols=343 Identities=17% Similarity=0.231 Sum_probs=223.8
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCC-CCCCCCCCCCCCCCcHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPM-ISYSSAGIRNCGHDAINE 338 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~ygt~~~~~~~~~~~~e 338 (805)
+|.|++|+++|+|||+||||+|||+|+++.. .++||++.|||.++ ++||| .+|
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~----------------s~hGY~~~D~y~ld~~~fGt----------~~e 93 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHSV----------------SEQGYMPGRLYDLDASKYGN----------EAQ 93 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----------------CCCCCCccccCCCCcccCCC----------HHH
Confidence 6899999999999999999999999998742 25899999999999 59997 899
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccCCCCCC--CccccCCCC---CccceeeC----------CCCCccccC--CCcccc
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKG--PILSFRGVD---NSVYYMLA----------PKGEFYNYS--GCGNTF 401 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~--~~~~~~~~~---~~~yy~~~----------~~g~~~~~~--g~~~~l 401 (805)
||+||++||++||+||+|+|+||++.++... .+..+.+.. ...|+... ..+.+..+. ...++|
T Consensus 94 lk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDL 173 (428)
T PLN00196 94 LKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDI 173 (428)
T ss_pred HHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCcc
Confidence 9999999999999999999999998655321 121222211 12232110 011111111 234899
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHH-HhcCCCCC
Q 003653 402 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDL-ISNDPILR 480 (805)
Q Consensus 402 n~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-i~~d~~~~ 480 (805)
|++||+||++|++++++|++++||||||||++++++. . +++. ++. ..
T Consensus 174 n~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~--~---------------------------f~~~~v~~--~~- 221 (428)
T PLN00196 174 DHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSA--E---------------------------VAKVYIDG--TE- 221 (428)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCH--H---------------------------HHHHHHHc--cC-
Confidence 9999999999999999888889999999999999964 1 2222 222 12
Q ss_pred CceeeeeecCCCCcccccccCC---------------CC----cccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCc
Q 003653 481 GVKLIAEAWDTGGLYQVGIFPH---------------WG----IWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNL 541 (805)
Q Consensus 481 ~~~ligE~w~~~~~~~~~~~~~---------------~~----~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~ 541 (805)
..+++||.|+.....+.+.... .+ ..+.++......+..++.+. .. .+.......+..
T Consensus 222 p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~--~~-~l~~~~~~~~~~ 298 (428)
T PLN00196 222 PSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGE--LW-RLRGADGKAPGV 298 (428)
T ss_pred CcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCC--ch-hhhhhcccCcch
Confidence 3689999997521111000000 00 00112222222222222221 00 000000000111
Q ss_pred cCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 003653 542 YQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLM 621 (805)
Q Consensus 542 ~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alll 621 (805)
-...|..+||||+|||+.|+..+... ...+.++|++++|
T Consensus 299 ---~~~~P~~aVtFvdNHDT~r~~~~~~~--------------------------------------~~~~~~lAyA~iL 337 (428)
T PLN00196 299 ---IGWWPAKAVTFVDNHDTGSTQHMWPF--------------------------------------PSDKVMQGYAYIL 337 (428)
T ss_pred ---hhcChhhceeeccCCCCccccccCCC--------------------------------------ccchHHHHHHHHH
Confidence 12467789999999999986543210 0223578999999
Q ss_pred hcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCC
Q 003653 622 VSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHA 701 (805)
Q Consensus 622 t~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~ 701 (805)
|+||+||||||+ .++|. +.+++++|+++||++++++.|++..
T Consensus 338 T~pG~P~IyYg~--------------------~~~~~--------~~~~i~~Li~~Rk~~~~~~~g~~~~---------- 379 (428)
T PLN00196 338 THPGNPCIFYDH--------------------FFDWG--------LKEEIAALVSIRNRNGITPTSELRI---------- 379 (428)
T ss_pred cCCCcceEeeCC--------------------CcCcc--------HHHHHHHHHHHHHhCCCcCCccEEE----------
Confidence 999999999994 24552 3468999999999999999998755
Q ss_pred CCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCC
Q 003653 702 PGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTS 756 (805)
Q Consensus 702 ~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~ 756 (805)
...+++++++.| ++.++|.+|..-..-. -+| ..|+.++.+.
T Consensus 380 -----~~a~~d~yv~~~----~~~~~~~i~~~~~~~~-~~~----~~~~~~~~g~ 420 (428)
T PLN00196 380 -----MEADADLYLAEI----DGKVIVKIGSRYDVSH-LIP----EGFQVVAHGN 420 (428)
T ss_pred -----EEecCCEEEEEE----CCEEEEEECCCCCccc-cCc----ccceEEEecC
Confidence 123467999999 2679999998632111 113 2488777653
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.5e-44 Score=392.26 Aligned_cols=285 Identities=30% Similarity=0.534 Sum_probs=194.7
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
|||+||+++|||||+||||+||||||++.+. .+|||++.||++++++||| .+|||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~---------------~~~gY~~~d~~~vd~~~Gt----------~~d~~ 55 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPN---------------GYHGYDPSDYYAVDPRFGT----------MEDFK 55 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSS---------------STTTTSESEEEEESTTTBH----------HHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccccccc---------------ccccccceeeeccccccch----------hhhhh
Confidence 8999999999999999999999999999431 3699999999999999997 99999
Q ss_pred HHHHHHHHcCCEEEEEEecccccCCCCCCC-ccccCCCCCccceeeCC-----CCCc---------c--------ccCCC
Q 003653 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGP-ILSFRGVDNSVYYMLAP-----KGEF---------Y--------NYSGC 397 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~-~~~~~~~~~~~yy~~~~-----~g~~---------~--------~~~g~ 397 (805)
+||++||++||+||||+|+||++..+++.. .....+.....||.+.+ .+.+ . .+...
T Consensus 56 ~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 56 ELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999876421 01111112344444321 1111 1 12334
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCC
Q 003653 398 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 477 (805)
Q Consensus 398 ~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~ 477 (805)
.++||+++|+||++|++++++|+ ++||||||||+++++.. .+|.. +...++..
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~--~~~~~-----------------------~~~~~~~~- 188 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPK--EFWKE-----------------------FRDEVKEE- 188 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSH--HHHHH-----------------------HHHHHHHH-
T ss_pred cchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccch--hhHHH-----------------------Hhhhhhhh-
Confidence 57999999999999999999999 67799999999999975 44544 44444432
Q ss_pred CCCCceeeeeecCCCCc-cccccc-CCCCcccccchhHHHHHHHH---HhCCCCcHHHHHHHHhCCCCccCCCCCCCCce
Q 003653 478 ILRGVKLIAEAWDTGGL-YQVGIF-PHWGIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNS 552 (805)
Q Consensus 478 ~~~~~~ligE~w~~~~~-~~~~~~-~~~~~~~~~n~~f~~~lr~~---~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 552 (805)
.+++.++||.|..... ...... .........+.......... ..........+...+......+ ..+...
T Consensus 189 -~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 263 (316)
T PF00128_consen 189 -KPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY----PDPYRA 263 (316)
T ss_dssp -HTTSEEEEEESSSSHHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS----TTGGGE
T ss_pred -ccccceeeeeccCCccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhh----ccccee
Confidence 2588999999876421 000000 00111111222222222222 2232322334444333221111 124688
Q ss_pred eeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecc
Q 003653 553 INFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMG 632 (805)
Q Consensus 553 vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~G 632 (805)
++|++|||+.|+.+.+.. ...+++++++++||+||+||||||
T Consensus 264 ~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G 305 (316)
T PF00128_consen 264 VNFLENHDTPRFASRFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYG 305 (316)
T ss_dssp EEESSHTTSSTHHHHTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETT
T ss_pred eecccccccccchhhhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeC
Confidence 999999999997765531 122688999999999999999999
Q ss_pred ccccCCCC
Q 003653 633 DEYGHTKG 640 (805)
Q Consensus 633 dE~G~~~~ 640 (805)
||+|+++.
T Consensus 306 ~E~g~~~~ 313 (316)
T PF00128_consen 306 DEIGMTGS 313 (316)
T ss_dssp GGGTBBTS
T ss_pred hhccCCCC
Confidence 99999854
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=2.3e-41 Score=373.26 Aligned_cols=302 Identities=17% Similarity=0.230 Sum_probs=203.5
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~ 341 (805)
-|++|+++|+||++||||+|||+|+++.. .+|||+|.|||.++++||| .+||++
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~~~~----------------~~~GY~~~d~y~~~~~~Gt----------~~el~~ 80 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPSQSL----------------APEGYLPQNLYSLNSAYGS----------EHLLKS 80 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcCC----------------CCCCCCcccccccCcccCC----------HHHHHH
Confidence 58999999999999999999999999853 2489999999999999997 899999
Q ss_pred HHHHHHHcCCEEEEEEecccccCCCC--CCCccccCCCCCccceee----CCCCC--cc--ccCCCccccCCCCHHHHHH
Q 003653 342 LVREAHKRGIEVVMDVVFNHTVEGND--KGPILSFRGVDNSVYYML----APKGE--FY--NYSGCGNTFNCNHPVVRQF 411 (805)
Q Consensus 342 lV~~aH~~Gi~VilDvV~NH~~~~~~--~~~~~~~~~~~~~~yy~~----~~~g~--~~--~~~g~~~~ln~~~~~vr~~ 411 (805)
||++||++||+||+|+|+||++.... .+.+..|.+.. ..|... ...|. .. ......+|||++||.||++
T Consensus 81 li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~-~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~ 159 (401)
T PLN02361 81 LLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP-LPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKD 159 (401)
T ss_pred HHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCc-CCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHH
Confidence 99999999999999999999854221 11122233210 011100 00111 01 1112358999999999999
Q ss_pred HHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeecCC
Q 003653 412 IVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDT 491 (805)
Q Consensus 412 i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w~~ 491 (805)
|++++++|++++||||||+|++++++. +||.+ +++.. . ..+++||.|+.
T Consensus 160 l~~~~~wl~~~~GiDGfRlDavk~~~~--~f~~~-----------------------~~~~~-----~-p~f~VGE~w~~ 208 (401)
T PLN02361 160 IIGWLIWLRNDVGFQDFRFDFAKGYSA--KFVKE-----------------------YIEAA-----K-PLFSVGEYWDS 208 (401)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCH--HHHHH-----------------------HHHhh-----C-CeEEEEEEecC
Confidence 999998777679999999999999974 45544 22221 1 36899999976
Q ss_pred CCccccc---c-------------cC-CCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceee
Q 003653 492 GGLYQVG---I-------------FP-HWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSIN 554 (805)
Q Consensus 492 ~~~~~~~---~-------------~~-~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vn 554 (805)
....... . .. ..+..+.++..+...+++.+.++ ...+...+...+.+ -+..|..+|+
T Consensus 209 ~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~---~~~l~~~~~~~~~~---~~~~p~~aVT 282 (401)
T PLN02361 209 CNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQ---WWRLRDAQGKPPGV---MGWWPSRAVT 282 (401)
T ss_pred CCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhh---HHHHhhhhcCCcch---hhcChhhceE
Confidence 3110000 0 00 00122334445555555544211 11121111111111 1245778999
Q ss_pred ecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccc
Q 003653 555 FVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDE 634 (805)
Q Consensus 555 fv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE 634 (805)
||+|||+.|+..+.. ....+.++|+|++||.||+||||||+=
T Consensus 283 FvdNHDt~r~~~~~~--------------------------------------~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 283 FIDNHDTGSTQAHWP--------------------------------------FPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred ecccCcCcchhhccC--------------------------------------CchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 999999988644321 013456678999999999999999871
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCC
Q 003653 635 YGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT 691 (805)
Q Consensus 635 ~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~ 691 (805)
++|+ .++.+++++||+|||+++.++.+++..
T Consensus 325 --------------------~~~~------~~~~~~I~~Li~lRk~~~~~~~s~~~i 355 (401)
T PLN02361 325 --------------------YDWG------GSIHDQIVKLIDIRKRQDIHSRSSIRI 355 (401)
T ss_pred --------------------cCCC------hHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 3454 357899999999999999999987644
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3.4e-39 Score=359.30 Aligned_cols=398 Identities=13% Similarity=0.152 Sum_probs=252.9
Q ss_pred eeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCC
Q 003653 245 HVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (805)
Q Consensus 245 ~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~yg 324 (805)
.+..|.++.. ..-|++.|++++ ||++ ||++|||+|+|++++ ++||++.||+.++|+||
T Consensus 4 ~lity~Ds~g---~glgdl~g~l~~--yL~~-~v~~i~LlPffps~s----------------D~GYdv~DY~~VDP~~G 61 (470)
T TIGR03852 4 MLITYADSLG---KNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTG----------------DRGFAPMDYTEVDPAFG 61 (470)
T ss_pred eEEEecCCCC---CChhhHHHHHHH--HHHH-hCCEEEECCCCcCCC----------------CCCcCchhhceeCcccC
Confidence 3455555332 336778888877 9999 799999999998542 48999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCC--CCCcccee-e----CCC---------
Q 003653 325 SAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVYYM-L----APK--------- 388 (805)
Q Consensus 325 t~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~--~~~~~yy~-~----~~~--------- 388 (805)
| +++|++|+++ |+||+|+|+|||+..|+|+..+.-.+ .....||. + .+.
T Consensus 62 t----------~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~ 126 (470)
T TIGR03852 62 D----------WSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDL 126 (470)
T ss_pred C----------HHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCcccccccc
Confidence 7 9999999997 89999999999999987754332221 23345565 1 100
Q ss_pred -----------------C--C--ccccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCcccccc
Q 003653 389 -----------------G--E--FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN 447 (805)
Q Consensus 389 -----------------g--~--~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~ 447 (805)
| + +..|+..++|||+.||.|+++|.+++++|+ +.||||||+||+.++-+ +
T Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K------~-- 197 (470)
T TIGR03852 127 IYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVK------K-- 197 (470)
T ss_pred ccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcc------c--
Confidence 0 1 113445689999999999999999999999 89999999999998854 2
Q ss_pred ccCccccCcccccCCCCCC-----hHHHHHHhcCCCCCCceeeeeecCC-CCcccccccCCCCcccccchhHHHHHHHHH
Q 003653 448 VYGIPIEGDLLTTGTPLRS-----PPLIDLISNDPILRGVKLIAEAWDT-GGLYQVGIFPHWGIWSEWNGKYRDIVRQFI 521 (805)
Q Consensus 448 ~~g~~~~~~~~~~g~~~~~-----~~~~~~i~~d~~~~~~~ligE~w~~-~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~ 521 (805)
.|+.+.+ ..+++.++.--..+++.||+|.|.. ...... +-.+.|++.|.-...-+.
T Consensus 198 ------------~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~~~------gde~~mvY~F~lppl~l~ 259 (470)
T TIGR03852 198 ------------LGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQFKI------AEHGYYVYDFALPMLVLY 259 (470)
T ss_pred ------------CCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccccc------ccceeEEccCccchhhHH
Confidence 3444421 1244444432244599999999631 111111 123445555544444333
Q ss_pred hCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHH---HHhhccccc-----ccCCCCC-------CCCC
Q 003653 522 KGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD---LVSYNQKHN-----LANGEDN-------NDGE 586 (805)
Q Consensus 522 ~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d---~~~~~~k~n-----~~~ge~~-------~dg~ 586 (805)
.-..+....+...+...+ ...+||+.|||+..+.+ +++..+... ...|..- .+|.
T Consensus 260 al~~~~~~~l~~wl~~~p----------~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~ 329 (470)
T TIGR03852 260 SLYSGKTNRLADWLRKSP----------MKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNN 329 (470)
T ss_pred HhhccCHHHHHHHHHhCc----------ccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCC
Confidence 322334566777776443 23479999999998733 221111100 0011110 0111
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCC---CCCCCCCCCCcccccCCcccCC
Q 003653 587 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG---NNNTYCHDNDINYFRWDKKEES 663 (805)
Q Consensus 587 ~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g---~~n~y~~d~~~~~~~W~~~~~~ 663 (805)
...+.-||.- ... ... ..++..+|.+++|++||||.||||+|+|+.+.- .....+++ +|.-.|+..+-.
T Consensus 330 ~~~Y~in~t~----~~a-L~~-~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~--Inr~~~~~~~i~ 401 (470)
T TIGR03852 330 LDIYQINCTY----YSA-LGD-DDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRN--INRHYYTLEEIA 401 (470)
T ss_pred cCceeeehhh----HHH-hCC-CHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCC--CCCCCCCHHHHH
Confidence 1111112211 011 111 246778899999999999999999999986411 01112233 455555543311
Q ss_pred ---hhHHHHHHHHHHHHHhhCcCCCC-CCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCC-CCEEEEEEeCCCCcEE
Q 003653 664 ---KSDFFRFCCLLTKFRHECESLGL-SDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPVI 738 (805)
Q Consensus 664 ---~~~l~~~~~~Li~lRk~~~aL~~-g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~-~~~~~Vv~N~~~~~~~ 738 (805)
...+..-+.+||++|+++|||+. |.+.. ...++.++++.|...+ ++.+.+++|++.+++.
T Consensus 402 ~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~---------------~~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~ 466 (470)
T TIGR03852 402 EEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI---------------ETPSENQIEIVRTNKDGGNKAILTANLKTKTFT 466 (470)
T ss_pred HHHhhHHHHHHHHHHHHHhhCcccCCCCceEe---------------cCCCCcEEEEEEEcCCCCceEEEEEecCCCcEe
Confidence 13355555669999999999987 65432 2235789999997654 4789999999988755
Q ss_pred E
Q 003653 739 I 739 (805)
Q Consensus 739 v 739 (805)
+
T Consensus 467 ~ 467 (470)
T TIGR03852 467 I 467 (470)
T ss_pred c
Confidence 4
No 31
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=6.3e-38 Score=351.25 Aligned_cols=403 Identities=14% Similarity=0.199 Sum_probs=255.8
Q ss_pred CcEEEEEeeccccccCCCCCCCCcChhhhccchh-HHHHcCCceEEECccccc-CcccccccCCcCCCCCcCccCCcccc
Q 003653 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLD-HLKDLGINCLELMPCHEF-NELEYFSYNSVLGDYKVNFWGYSTIN 315 (805)
Q Consensus 238 ~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~-yLk~LGvt~I~L~Pi~~~-~~~~~~~~~~~~~~~~~~~wGY~~~~ 315 (805)
+.|+.-.+.+++. .|+|+||+++|+ ||++| |++|||||+|+. +. ..+||++.|
T Consensus 3 n~~~litY~Ds~~---------~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~---------------sD~GYdv~D 57 (495)
T PRK13840 3 NKVQLITYADRLG---------DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDG---------------ADAGFDPID 57 (495)
T ss_pred CceEEEEeccCCC---------CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCC---------------CCCCCCCcC
Confidence 4455556666553 289999999999 59999 999999999952 21 137999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCC--CCCccceeeCCC-----
Q 003653 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVYYMLAPK----- 388 (805)
Q Consensus 316 y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~--~~~~~yy~~~~~----- 388 (805)
|+.++|+||| ++||++|++ ||+||+|+|+||++..|+|+..+.-.+ ..+..||.+.++
T Consensus 58 Y~~VDP~fGt----------~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~ 122 (495)
T PRK13840 58 HTKVDPRLGD----------WDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDG 122 (495)
T ss_pred hhhcCcccCC----------HHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCC
Confidence 9999999997 999999995 999999999999999998754332121 223445543210
Q ss_pred --------------CC-c--------------cccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccC
Q 003653 389 --------------GE-F--------------YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG 439 (805)
Q Consensus 389 --------------g~-~--------------~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~ 439 (805)
|. + ..|...++|||++||+|+++|++++++|+ +.||||||+|++.++-++
T Consensus 123 ~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~ 201 (495)
T PRK13840 123 ATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKK 201 (495)
T ss_pred CCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcC
Confidence 11 1 12344679999999999999999999999 789999999999887432
Q ss_pred CCccccccccCccccCcccccCCCCCC----hHHHHHHhcCCCCCCceeeeeecCCCCcc-cccccCCCCcccccchhHH
Q 003653 440 SSLWDSVNVYGIPIEGDLLTTGTPLRS----PPLIDLISNDPILRGVKLIAEAWDTGGLY-QVGIFPHWGIWSEWNGKYR 514 (805)
Q Consensus 440 ~~~w~~~~~~g~~~~~~~~~~g~~~~~----~~~~~~i~~d~~~~~~~ligE~w~~~~~~-~~~~~~~~~~~~~~n~~f~ 514 (805)
.|+++.+ ..+++.++.--...+..+|+|.|..-+.. ..+. .....+|+.+.
T Consensus 202 --------------------~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~----e~~~vYnF~Lp 257 (495)
T PRK13840 202 --------------------AGTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAK----KVDRVYDFALP 257 (495)
T ss_pred --------------------CCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccc----cccEEecchhh
Confidence 2333322 12444443311112567899987532110 1111 24456676666
Q ss_pred HHHHHH-HhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHH----------Hhhccccc-------c
Q 003653 515 DIVRQF-IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL----------VSYNQKHN-------L 576 (805)
Q Consensus 515 ~~lr~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~----------~~~~~k~n-------~ 576 (805)
..+... .+|+ ...+...+... |..++||+.|||+..+.|+ +...++.. .
T Consensus 258 ~ll~~aL~~~~---~~~L~~~l~~~----------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~ 324 (495)
T PRK13840 258 PLILHTLFTGD---VEALAHWLEIR----------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHAN 324 (495)
T ss_pred HHHHHHHHhCC---chHHHHHHHhC----------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHh
Confidence 555443 3443 33444445432 2345799999999998222 21111110 0
Q ss_pred cCCCC---CCCC--CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCC---CCCCCCC
Q 003653 577 ANGED---NNDG--ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG---NNNTYCH 648 (805)
Q Consensus 577 ~~ge~---~~dg--~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g---~~n~y~~ 648 (805)
..+.. +.++ ....+.-||+-....... .++..++.+++|++||||.||||+|+|..+.- .....++
T Consensus 325 ~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~------d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R 398 (495)
T PRK13840 325 SHGESRQATGAAASNLDLYQVNCTYYDALGRN------DQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGR 398 (495)
T ss_pred ccCceeecCCcccccccchhhhccHHHHhcCC------cHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCc
Confidence 00000 0011 111223344433221111 24677888999999999999999999986411 0111244
Q ss_pred CCCcccccCCcccCC-hhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEE
Q 003653 649 DNDINYFRWDKKEES-KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIY 727 (805)
Q Consensus 649 d~~~~~~~W~~~~~~-~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~ 727 (805)
.-+|..++|++.+.. ...+++-+++||++|+++|||. |++.. ....+..++..|..+. ....
T Consensus 399 ~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~-~~~~~---------------~~~~~~~~~~~~~~~~-~~~~ 461 (495)
T PRK13840 399 DINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFD-GAFSY---------------AADGDTSLTLSWTAGD-SSAS 461 (495)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-ceEEE---------------ecCCCCeEEEEEecCC-ceEE
Confidence 556677788765532 3668899999999999999995 54422 1123466777777653 6677
Q ss_pred EEEeCCCCcEEEEc
Q 003653 728 VAFNASHLPVIISL 741 (805)
Q Consensus 728 Vv~N~~~~~~~v~L 741 (805)
+.+|+......+..
T Consensus 462 ~~~~~~~~~~~~~~ 475 (495)
T PRK13840 462 LTLDFAPKKGLITA 475 (495)
T ss_pred EEEEcccceEEEEe
Confidence 78888776654443
No 32
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=365.06 Aligned_cols=413 Identities=24% Similarity=0.290 Sum_probs=248.2
Q ss_pred cEEEEEeeccccccCCCCC---CCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccc
Q 003653 239 LIIYEVHVRGFTRHESSKT---EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (805)
Q Consensus 239 ~vIYei~v~~Ft~~~~s~~---~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~ 315 (805)
.+||++.+++|.+.+.++. ...|||+||+++|||||+|||++|||+|+++.. ..++||++.|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~---------------~~~~gY~~~D 65 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESP---------------QADHGYDVSD 65 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCC---------------ccCCCccccc
Confidence 4899999999999665211 225999999999999999999999999999953 2359999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCC-C-ccceeeCC------
Q 003653 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVD-N-SVYYMLAP------ 387 (805)
Q Consensus 316 y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~-~-~~yy~~~~------ 387 (805)
|+.+++.||| +++|++||++||++||+||||+|+||++..+.|.......+.. . ..||.+.+
T Consensus 66 y~~id~~~Gt----------~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~ 135 (505)
T COG0366 66 YTKVDPHFGT----------EEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGT 135 (505)
T ss_pred hhhcCcccCC----------HHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCC
Confidence 9999999997 9999999999999999999999999999988654332222111 0 24444321
Q ss_pred ------------------CCCcc--ccCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCcccccc
Q 003653 388 ------------------KGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN 447 (805)
Q Consensus 388 ------------------~g~~~--~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~ 447 (805)
.+.++ .+....++||+.+++||+.+.+.+++|+ ++||||||+|+++++.... +...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~--~~~~- 211 (505)
T COG0366 136 PPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDF--GLPP- 211 (505)
T ss_pred CCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhcccc--CCCC-
Confidence 01111 2233457899999999999999999999 5999999999999997531 0000
Q ss_pred ccCccccCcccccCCCCCChHHHHHHhc---CCCC--CCceeeeeecCCCCcccccccCCCCcccccchhHHHHH--HHH
Q 003653 448 VYGIPIEGDLLTTGTPLRSPPLIDLISN---DPIL--RGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIV--RQF 520 (805)
Q Consensus 448 ~~g~~~~~~~~~~g~~~~~~~~~~~i~~---d~~~--~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~l--r~~ 520 (805)
... .......+.+.+.. +... .......+............ ........+..|.... ...
T Consensus 212 --~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 278 (505)
T COG0366 212 --SEE---------NLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDFADN--TSFTNPELSMLFDFSHVGLDF 278 (505)
T ss_pred --ccc---------ccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhhhhc--cchhhhhHhhccccccccccc
Confidence 000 00000111221111 0000 11111222111000000000 0000000000000000 000
Q ss_pred HhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcc
Q 003653 521 IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEF 600 (805)
Q Consensus 521 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~ 600 (805)
..........+...+........ ........|..|||..|+.+..... .+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~hD~~r~~~~~~~~-------------------------~~-- 328 (505)
T COG0366 279 EALAPLDAEELKEILADWPLAVN---LNDGWNNLFLSNHDQPRLLSRFGDD-------------------------VG-- 328 (505)
T ss_pred cccCcccHHHHHHHHHHHHhhhc---cccCchhhhhhhcCccceeeeccCC-------------------------cc--
Confidence 00000112222222221111110 0111223379999998876544100 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCC-------------CCCCCCCcccccCC---------
Q 003653 601 ANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNN-------------TYCHDNDINYFRWD--------- 658 (805)
Q Consensus 601 ~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n-------------~y~~d~~~~~~~W~--------- 658 (805)
.+...++++.+++++.+|+|+||||+|+|++.....+ ....+..+.+|.|+
T Consensus 329 -------~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~ 401 (505)
T COG0366 329 -------GRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFT 401 (505)
T ss_pred -------chHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCcc
Confidence 0245677788889999999999999999998754432 11234677888888
Q ss_pred ------------------ccc-CC--hhHHHHHHHHHHHHHhhCcCC-CCCCCCCccceeecCCCCCCCCCCCCCcEEEE
Q 003653 659 ------------------KKE-ES--KSDFFRFCCLLTKFRHECESL-GLSDFPTADRLQWHGHAPGLPDWSDKSRFVAF 716 (805)
Q Consensus 659 ------------------~~~-~~--~~~l~~~~~~Li~lRk~~~aL-~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf 716 (805)
... .+ ..+++.++++|+++|+.+.++ ..+..... .......+++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~-------------~~~~~~~~~~~ 468 (505)
T COG0366 402 GGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVL-------------LADDDPSLLAF 468 (505)
T ss_pred CCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCccccee-------------cCCCCceEEEE
Confidence 111 11 357899999999999998544 44422220 12234579999
Q ss_pred EEEcCCCCEEEEEEeCCCCcEEEEcCCC
Q 003653 717 TLIDSVKGEIYVAFNASHLPVIISLPKR 744 (805)
Q Consensus 717 ~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~ 744 (805)
.|.... +.++|++|++.....+.+|..
T Consensus 469 ~~~~~~-~~~~~~~n~~~~~~~~~~p~~ 495 (505)
T COG0366 469 LRESGG-ETLLVVNNLSEEEQEVELPGS 495 (505)
T ss_pred ecccCC-ceEEEEEcCCCccccccCCch
Confidence 998765 679999999987667777753
No 33
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=344.91 Aligned_cols=456 Identities=17% Similarity=0.223 Sum_probs=276.2
Q ss_pred CCCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcc
Q 003653 234 YPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (805)
Q Consensus 234 ~~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (805)
..|+..++|||.+++|..++..+ .|+++|+.+||+|||+||||+|||+|+++... .++||++
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~d~---~G~~~GI~~kldyi~~lG~taiWisP~~~s~~---------------~~~GY~~ 74 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDGDG---VGDLKGITSKLDYIKELGFTAIWLSPFTKSSK---------------PDFGYDA 74 (545)
T ss_pred hhhhcCceeEEeccccccccCCC---ccccccchhhhhHHHhcCCceEEeCCCcCCCH---------------HHhccCc
Confidence 36789999999999999955443 59999999999999999999999999999653 1599999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCc--
Q 003653 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF-- 391 (805)
Q Consensus 314 ~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~-- 391 (805)
.||+.++++||| +++|++||+++|++||++|+|+|+||++..++|+............||.+.+.+.+
T Consensus 75 ~d~~~l~p~fGt----------~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~ 144 (545)
T KOG0471|consen 75 SDLEQLRPRFGT----------EEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDV 144 (545)
T ss_pred cchhhhcccccH----------HHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccc
Confidence 999999999997 99999999999999999999999999998887654333333333445555443211
Q ss_pred ------cc-----------------------cCCCccccCCCCHHHHHHHHHHHH-HHHHcCceeEEEEccccccccCCC
Q 003653 392 ------YN-----------------------YSGCGNTFNCNHPVVRQFIVDCLR-YWVTEMHVDGFRFDLASIMTRGSS 441 (805)
Q Consensus 392 ------~~-----------------------~~g~~~~ln~~~~~vr~~i~d~l~-~W~~e~gvDGfR~D~a~~l~~~~~ 441 (805)
.+ +..-++++|+++|.|++.|.++++ +|+ ++||||||+|+++++...
T Consensus 145 g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~-- 221 (545)
T KOG0471|consen 145 GKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGE-- 221 (545)
T ss_pred cCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEcccccccc--
Confidence 11 112247999999999999999999 787 999999999999999642
Q ss_pred ccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCceeeeeecCCCCcccccccCCCCcccccchhHHHHHHHHH
Q 003653 442 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFI 521 (805)
Q Consensus 442 ~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~ 521 (805)
+|.. ...+ ..+.-.||.|.....+.. ....+..+..-+..+....+..+
T Consensus 222 ~~~~---------------------------~~~~---~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~ 270 (545)
T KOG0471|consen 222 NFKN---------------------------MWPD---EPVFDVGEKLQDDNYVAY-QYNDYGEDQPEIHDLIRAERFLL 270 (545)
T ss_pred cccc---------------------------cccC---CCcccceeEecCcchhhc-ccccccccchhhhhHHHHHHhhh
Confidence 2221 0000 023345555543321110 00011111111112222222222
Q ss_pred hCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeecccCCCcchHH------HHhhcc-------cccccCCCCCCCCCCC
Q 003653 522 KGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD------LVSYNQ-------KHNLANGEDNNDGETH 588 (805)
Q Consensus 522 ~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d------~~~~~~-------k~n~~~ge~~~dg~~~ 588 (805)
.......+--..++... ..+ .......+|.+||+..+..+ .++... ++.+..--.+.+..+.
T Consensus 271 ~~~~~~~~~~~~~~l~~-~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (545)
T KOG0471|consen 271 DDYSAAFGFGDKRILQT-EAY----SSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENR 345 (545)
T ss_pred hhhhhcccccchhhhhh-hhh----ccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCC
Confidence 11100000000000000 000 00123445555555332100 000000 0000000012222333
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCC--CCCCCCCCC--CCcccccCCccc---
Q 003653 589 NNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG--GNNNTYCHD--NDINYFRWDKKE--- 661 (805)
Q Consensus 589 n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~--g~~n~y~~d--~~~~~~~W~~~~--- 661 (805)
-..|..|..... ....++.....++..++++++||+|++|+|+|+|+... ...+..... ..+++|+|+...
T Consensus 346 ~a~W~~~~~~~~--r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~g 423 (545)
T KOG0471|consen 346 WAHWVLGNHDQA--RLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAG 423 (545)
T ss_pred ceeeeecCccch--hhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccC
Confidence 445666654322 22233344446777889999999999999999999875 222221111 126777776641
Q ss_pred ------------------------CChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEE
Q 003653 662 ------------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFT 717 (805)
Q Consensus 662 ------------------------~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~ 717 (805)
..+++++..++++..+|+....+..|.... ...+..+++|.
T Consensus 424 fs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~---------------~~~~~~if~~~ 488 (545)
T KOG0471|consen 424 FSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVL---------------FAATPGLFSFS 488 (545)
T ss_pred CCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceee---------------ecCCCceEEEE
Confidence 124788999999999999976555554332 23357899999
Q ss_pred EEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEE
Q 003653 718 LIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 797 (805)
Q Consensus 718 R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 797 (805)
|.......+++++|+++.+....+-.. .+.....+.. .......+.|.|.+++||
T Consensus 489 r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------------------~~~~~~~~~l~p~e~~vl 543 (545)
T KOG0471|consen 489 RNWDGNERFIAVLNFGDSPLSLNLTDL---DSVSLLSSNY----------------------SDVDLSRLKLEPHEGLVL 543 (545)
T ss_pred eccCCCceEEEEEecCCcccccccccc---cceeeeeccc----------------------cccccceeeecCCceEEE
Confidence 998877889999999887755444332 1211111100 113356789999999998
Q ss_pred E
Q 003653 798 L 798 (805)
Q Consensus 798 ~ 798 (805)
.
T Consensus 544 ~ 544 (545)
T KOG0471|consen 544 R 544 (545)
T ss_pred e
Confidence 5
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.6e-35 Score=342.01 Aligned_cols=307 Identities=21% Similarity=0.272 Sum_probs=200.3
Q ss_pred CCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccc
Q 003653 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (805)
Q Consensus 236 ~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~ 315 (805)
......|++.+..|.-... .+ +.-|++|+++|+||++||||+|||+|+++.. .+|||+|.|
T Consensus 496 ~~~~~~~eVmlQgF~Wds~--~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~----------------s~~GY~p~D 556 (894)
T PLN02784 496 SGTGSGFEILCQGFNWESH--KS-GRWYMELGEKAAELSSLGFTVVWLPPPTESV----------------SPEGYMPKD 556 (894)
T ss_pred ccccCCceEEEEeEEcCcC--CC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCC----------------CCCCcCccc
Confidence 3566789999999974211 11 2238999999999999999999999998743 248999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCC--CCCccccCCCCCccceee-----C--
Q 003653 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KGPILSFRGVDNSVYYML-----A-- 386 (805)
Q Consensus 316 y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~--~~~~~~~~~~~~~~yy~~-----~-- 386 (805)
||.++++||| .+||++||++||++||+||+|+|+||++.... .+.+..|.+.. .|... +
T Consensus 557 ~y~lds~yGT----------~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~--dW~d~~i~~ddp~ 624 (894)
T PLN02784 557 LYNLNSRYGT----------IDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRL--NWDDRAVVADDPH 624 (894)
T ss_pred ccccCcCcCC----------HHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCee--cCCCCcccCCCcc
Confidence 9999999997 89999999999999999999999999975311 11111222110 01100 0
Q ss_pred --CCCCccc--cCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCC
Q 003653 387 --PKGEFYN--YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 462 (805)
Q Consensus 387 --~~g~~~~--~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~ 462 (805)
..|..+. .....+|||+++|.||+.|.+++++|++++||||||||+++++. ..
T Consensus 625 F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~------~~----------------- 681 (894)
T PLN02784 625 FQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFW------GG----------------- 681 (894)
T ss_pred cCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCC------HH-----------------
Confidence 0011111 11234799999999999999999999989999999999998663 22
Q ss_pred CCCChHHHH-HHhcCCCCCCceeeeeecCCCCcccccccCCCCcccccch---hHHHHHHHHHhCCCCcHH--------H
Q 003653 463 PLRSPPLID-LISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNG---KYRDIVRQFIKGTDGFAG--------A 530 (805)
Q Consensus 463 ~~~~~~~~~-~i~~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~---~f~~~lr~~~~g~~~~~~--------~ 530 (805)
++. -++. . ...+++||.|+.... .. ..+++ .-++.+.+|+....+... .
T Consensus 682 ------Fvkeyv~a--~-kp~F~VGEyWd~~~~-~~---------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~ 742 (894)
T PLN02784 682 ------YVKDYMEA--S-EPYFAVGEYWDSLSY-TY---------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGI 742 (894)
T ss_pred ------HHHHHHhc--c-CCcEEEEEecccccc-cc---------CccccCchhHHHHHHHHHHhCCCceeeechhHHHH
Confidence 222 2222 1 236899999986321 00 11121 125566666654332111 1
Q ss_pred HHHHHhCCC-----Ccc--CC--CCCCCCceeeecccCCCcchHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcch
Q 003653 531 FAECLCGSP-----NLY--QG--GGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFA 601 (805)
Q Consensus 531 ~~~~l~~~~-----~~~--~~--~~~~p~~~vnfv~nHD~~rl~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~ 601 (805)
|.+.+.+.. ... .. -+..|..+|+||+|||+.+... +|...
T Consensus 743 L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~p------ 792 (894)
T PLN02784 743 LHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG------------------------HWRFP------ 792 (894)
T ss_pred HHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc------------------------cCCCC------
Confidence 111221100 000 00 1356889999999999975311 22111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhC
Q 003653 602 NILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHEC 681 (805)
Q Consensus 602 ~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~ 681 (805)
..+..+++|++||.||+||||||+=++.. .+-+++||.+||..
T Consensus 793 --------~~k~~~AYAyILthpG~PcVFy~h~y~~~-----------------------------~~~I~~Li~iRk~~ 835 (894)
T PLN02784 793 --------EGKEMQGYAYILTHPGTPAVFYDHIFSHY-----------------------------HPEIASLISLRNRQ 835 (894)
T ss_pred --------ccchhhHHHHHHcCCCcceEEehhhhhhh-----------------------------HHHHHHHHHHHHHc
Confidence 11234588999999999999998865321 22389999999985
Q ss_pred c
Q 003653 682 E 682 (805)
Q Consensus 682 ~ 682 (805)
-
T Consensus 836 g 836 (894)
T PLN02784 836 K 836 (894)
T ss_pred C
Confidence 3
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.3e-34 Score=324.42 Aligned_cols=481 Identities=15% Similarity=0.111 Sum_probs=286.9
Q ss_pred CCcEEEEEeeccccccCCCCCCCCcChhhhc-c--chhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcc
Q 003653 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVV-E--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (805)
Q Consensus 237 ~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~-~--~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (805)
...+.+.+++..+.... +..+.+.. + ..+||++|||++|||+|++++....-+... + ....|||+
T Consensus 50 ~a~~W~~~~P~s~i~~~------~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t-P-----~~D~gyDi 117 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPE------GCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFT-P-----SIDGNFDR 117 (688)
T ss_pred hcCeeEEecchhhcCCC------CCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCC-C-----CCCCCCCc
Confidence 45677888888876532 23344433 2 359999999999999999997433211110 0 11368999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccce----------
Q 003653 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY---------- 383 (805)
Q Consensus 314 ~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy---------- 383 (805)
.| +.+++.||| ++||++||++||++||+||+|+|+|||+.+++ +........+++.||
T Consensus 118 ~d-~~Idp~~GT----------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W 185 (688)
T TIGR02455 118 IS-FDIDPLLGS----------EEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDW 185 (688)
T ss_pred cc-CccCcccCC----------HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeecccccccc
Confidence 99 599999997 99999999999999999999999999999886 333222223445556
Q ss_pred -eeCC--C--------------------------------------------------C----Ccc--ccCCCccccCCC
Q 003653 384 -MLAP--K--------------------------------------------------G----EFY--NYSGCGNTFNCN 404 (805)
Q Consensus 384 -~~~~--~--------------------------------------------------g----~~~--~~~g~~~~ln~~ 404 (805)
.+.+ . | .+| .|...+|+||+.
T Consensus 186 ~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~ 265 (688)
T TIGR02455 186 ALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWL 265 (688)
T ss_pred ccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCcc
Confidence 2211 0 0 111 233446899999
Q ss_pred CHH--HHHHHH-HHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhc----CC
Q 003653 405 HPV--VRQFIV-DCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN----DP 477 (805)
Q Consensus 405 ~~~--vr~~i~-d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~----d~ 477 (805)
||. ||+.|+ +++++|+ ++|+||||+|++.++..+.. ..+..+ +. ..++.+.++. ..
T Consensus 266 dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~-----------~~~~~~----~e-~h~ll~~~r~~l~~~~ 328 (688)
T TIGR02455 266 DPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERR-----------AEGTAW----SE-GHPLSLTGNQLIAGAI 328 (688)
T ss_pred CccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecC-----------CCCCCC----Cc-cCHHHHHHHHHHHHhh
Confidence 999 999999 9999999 99999999999999864210 011111 11 1234333322 12
Q ss_pred CCCCceeeeeecCCCCcccccccCCCCcccccchhHHHHHHH-HHhCCCCcHHHHHHHHhCCCCccCCCCCCCCceeeec
Q 003653 478 ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQ-FIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFV 556 (805)
Q Consensus 478 ~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv 556 (805)
..++..+++|.--.-.. ....|.. +.+..+|+..+..+.- +.+|+ ..-+...|...+.. +-++.+-++|+
T Consensus 329 r~~Gg~ll~E~nl~~~d-~~~~~g~-~~dl~~dF~t~p~~~~AL~tgd---a~pLr~~L~~~~~~----gid~~~~~~~L 399 (688)
T TIGR02455 329 RKAGGFSFQELNLTIDD-IAAMSHG-GADLSYDFITRPAYHHALLTGD---TEFLRLMLKEMHAF----GIDPASLIHAL 399 (688)
T ss_pred hcCCeeEeeeccCCHHH-HHHHhCC-CcceeecccccHHHHHHHHcCC---HHHHHHHHHhhhcC----CCCchhhhhhc
Confidence 23577888885110000 0000111 2333334333333322 23443 33444445444322 12456779999
Q ss_pred ccCCCcchHHHHhhcccc---------cccCCCCC-----------CCCCC---CCCCC--------------CCCCCCc
Q 003653 557 CAHDGFSLADLVSYNQKH---------NLANGEDN-----------NDGET---HNNSW--------------NCGQEGE 599 (805)
Q Consensus 557 ~nHD~~rl~d~~~~~~k~---------n~~~ge~~-----------~dg~~---~n~sw--------------~~g~~~~ 599 (805)
.|||+.|+. ++.+-..| ....|... --++. +-.-| +.|...
T Consensus 400 rNHDELtle-lvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRr- 477 (688)
T TIGR02455 400 QNHDELTLE-LVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRD- 477 (688)
T ss_pred cCccccchh-hhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCcc-
Confidence 999998874 33110000 00000000 00111 11112 333322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh----cCCceEEecc--------------ccccCCCCC--CCCCCCCCC----C----
Q 003653 600 FANILVKKLRRRQMRNFFLCLMV----SQGVPMISMG--------------DEYGHTKGG--NNNTYCHDN----D---- 651 (805)
Q Consensus 600 ~~~~~~~~~~~~~~r~a~alllt----~pGiP~Iy~G--------------dE~G~~~~g--~~n~y~~d~----~---- 651 (805)
.+ ....-.+++++++.++|++ +||+|+|||| +|+|+-..- ++..|..-+ .
T Consensus 478 La--p~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~ 555 (688)
T TIGR02455 478 LD--AIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASA 555 (688)
T ss_pred ch--hhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhcc
Confidence 11 1112245678889999998 9999999999 999986310 011111000 0
Q ss_pred ----cccccCCc---ccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcC-CC
Q 003653 652 ----INYFRWDK---KEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDS-VK 723 (805)
Q Consensus 652 ----~~~~~W~~---~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~-~~ 723 (805)
+...-+.. +..++.++++++++|+++||.++.+..+.+... -..++.++++.+... .+
T Consensus 556 ~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~--------------~~~~~gvLa~v~~l~~~~ 621 (688)
T TIGR02455 556 EGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIP--------------DVQAPGLLVMVHELPAGK 621 (688)
T ss_pred CCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeec--------------CCCCCcEEEEEEEcCCCC
Confidence 01111111 122358999999999999999999998876552 234679999999744 33
Q ss_pred CEEEEEEeCCCCcE--EEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEEeCC
Q 003653 724 GEIYVAFNASHLPV--IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 724 ~~~~Vv~N~~~~~~--~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 801 (805)
+.+++|.|++.+++ ++.++..++..++++++.......+ ....-+++|+|+.-..|..++
T Consensus 622 ~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~------------------~~~~~~i~L~~y~~~wl~~~~ 683 (688)
T TIGR02455 622 GIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLT------------------DDCELMINLDPYEALALRIVN 683 (688)
T ss_pred ceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcC------------------CCceeEEEecCcceEEEEecc
Confidence 67999999998665 5556665555777777653321100 123468999999999888776
Q ss_pred CC
Q 003653 802 DE 803 (805)
Q Consensus 802 ~~ 803 (805)
+.
T Consensus 684 ~~ 685 (688)
T TIGR02455 684 AA 685 (688)
T ss_pred cc
Confidence 43
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.97 E-value=2e-30 Score=303.28 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=75.9
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
+|||.+++++|+||++|||++|||+||+++.. ..+|||++.||+.+++.||+ .++|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~--------------gs~hGYdv~D~~~idp~lGt----------~edf 67 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVP--------------GSTHGYDVVDHSEINPELGG----------EEGL 67 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCC--------------CCCCCCCCCCCCCcCCCCCC----------HHHH
Confidence 68999999999999999999999999998532 12599999999999999997 8999
Q ss_pred HHHHHHHHHcCCEEEEEEecccccCC
Q 003653 340 KLLVREAHKRGIEVVMDVVFNHTVEG 365 (805)
Q Consensus 340 k~lV~~aH~~Gi~VilDvV~NH~~~~ 365 (805)
++||++||++||+||||+|+||++.+
T Consensus 68 ~~Lv~aah~~Gm~vIlDiVpNH~a~~ 93 (825)
T TIGR02401 68 RRLSEAARARGLGLIVDIVPNHMAVH 93 (825)
T ss_pred HHHHHHHHHCCCEEEEEecccccccc
Confidence 99999999999999999999999876
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=3.5e-26 Score=268.79 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=76.3
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
.++|.+++++|+||++||||+|||+||++... ..+|||++.||+.+++.||+ .++|
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~--------------gs~hGYdv~D~~~idp~lGt----------~e~f 71 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARP--------------GSTHGYDVVDHTRINPELGG----------EEGL 71 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCC--------------CCCCCCCcCCCCCcCCCCCC----------HHHH
Confidence 58999999999999999999999999998532 12599999999999999997 8999
Q ss_pred HHHHHHHHHcCCEEEEEEecccccCCC
Q 003653 340 KLLVREAHKRGIEVVMDVVFNHTVEGN 366 (805)
Q Consensus 340 k~lV~~aH~~Gi~VilDvV~NH~~~~~ 366 (805)
++||++||++||+||||+|+||++.++
T Consensus 72 ~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 72 RRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred HHHHHHHHHCCCEEEEEeccccccCcC
Confidence 999999999999999999999998765
No 38
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.88 E-value=2.9e-20 Score=205.07 Aligned_cols=291 Identities=22% Similarity=0.351 Sum_probs=185.8
Q ss_pred CCCeEEeCCe-EEEEEEcCCCC-------eEEEEEEeCCCccCCc-ee-------eeeecccccCCCCCEEEEEEcCCC-
Q 003653 97 PFGATLRDGG-VNFSIFSSNAV-------SATLCLITLSDLQENK-VT-------EEIALDSFANKTGDVWHVFLKGDF- 159 (805)
Q Consensus 97 plGa~~~~~~-~~F~vwap~a~-------~v~l~l~~~~d~~~~~-~~-------~~~~l~~~~~~~~gvW~~~v~~~~- 159 (805)
.|||++.++| |.|.+|.|.-. .|.|.+|++-+.-+.. .. ..+||. +.|.+-+..|.|..
T Consensus 27 rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~----~qgey~WgVv~Glra 102 (811)
T PF14872_consen 27 RLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLE----RQGEYHWGVVAGLRA 102 (811)
T ss_pred HhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeec----cccceeeehhhccCC
Confidence 5999999888 89999999655 9999999875422211 11 233442 34555555566644
Q ss_pred -----CCceeeEEEcCccCCCCCccccCcccccCcccceeeeccccCCCCCCCCCCCcceecccC--CCCCCCC-----C
Q 003653 160 -----KDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPT--PEDEFDW-----E 227 (805)
Q Consensus 160 -----~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~w-----~ 227 (805)
-|.+|.-+.... .| .-++|.||.|.++ +||+.+|.+-+- +..+-.. +.+.|.= .
T Consensus 103 Gtr~q~GsfYwLry~d~----~~----~~~~I~DpLaySl----PyGvfaPAElYD--l~~lq~~RaD~~Yf~~~~a~~~ 168 (811)
T PF14872_consen 103 GTRDQAGSFYWLRYRDQ----DG----EVQIIRDPLAYSL----PYGVFAPAELYD--LERLQRRRADLDYFEATGAADP 168 (811)
T ss_pred CCcccccceEEEEEccC----CC----CeEEecccccccC----cccccChHHhhc--hHhHhhhhhhHHHHHhhccccC
Confidence 356888775422 12 2458899999987 789888763210 1111000 0001110 0
Q ss_pred CCCCCCCCCCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHH---------------cCCceEEECcccccCc-
Q 003653 228 GDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKD---------------LGINCLELMPCHEFNE- 291 (805)
Q Consensus 228 ~~~~~~~~~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~---------------LGvt~I~L~Pi~~~~~- 291 (805)
.+..++.+ ....|-||||..-+. .||+.|+++....|.+ .|+++|+||||-...+
T Consensus 169 ~~~~~rv~-~P~nILQiHv~TAsp--------~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtiey 239 (811)
T PF14872_consen 169 SDGIPRVP-APRNILQIHVGTASP--------EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEY 239 (811)
T ss_pred CCCCcccC-CCceeEEEecCCCCC--------CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCccee
Confidence 12233332 467899999998766 6999999987666654 8999999999865432
Q ss_pred -------ccccccCCcC---------------------CCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 292 -------LEYFSYNSVL---------------------GDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 292 -------~~~~~~~~~~---------------------~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
.+++...+.. ......+||||+.=+ ++-.++|..= +..+++||.+||
T Consensus 240 r~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~----GsaAtNPalL-~TlRPDElVdfi 314 (811)
T PF14872_consen 240 RAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVIL----GSAATNPALL-ETLRPDELVDFI 314 (811)
T ss_pred ccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceeee----ccCCCCHHHH-hcCCcHHHHHHH
Confidence 1111111110 011345799998643 2222222210 235799999999
Q ss_pred HHHHH---cCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHH
Q 003653 344 REAHK---RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420 (805)
Q Consensus 344 ~~aH~---~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~ 420 (805)
..+|. ..|+||+|+||.|.-..... .+ +..|+ ..| + =.|.++|+.+|.||..+++.-+.=+
T Consensus 315 atLHnFp~gPIqvIyDlVyGHADNQ~~~--LL------n~~fl-kGP--n-----MYGQdlnhq~P~VRAILLEmQRRK~ 378 (811)
T PF14872_consen 315 ATLHNFPTGPIQVIYDLVYGHADNQALD--LL------NRRFL-KGP--N-----MYGQDLNHQNPVVRAILLEMQRRKI 378 (811)
T ss_pred HHHhcCCCCCeEEEEeeecccccchhhH--hh------hhhhc-cCC--c-----cccccccccChHHHHHHHHHHHhhc
Confidence 99995 78999999999998654321 11 11122 111 0 1267999999999999999999998
Q ss_pred HcCceeEEEEcccccc
Q 003653 421 TEMHVDGFRFDLASIM 436 (805)
Q Consensus 421 ~e~gvDGfR~D~a~~l 436 (805)
++|+||+|+|-+...
T Consensus 379 -n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 379 -NTGADGIRVDGGQDF 393 (811)
T ss_pred -ccCCceeEecccccc
Confidence 899999999988765
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.1e-20 Score=192.24 Aligned_cols=379 Identities=18% Similarity=0.230 Sum_probs=228.0
Q ss_pred Chhhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCcc-CCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 262 TYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFW-GYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 262 ~~~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~w-GY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
++..|..+. ..|.--|+..|+++|+.|..-.. +. .+.-| -|+|+.| .++.+-|. ++||
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~--------~~-~rPWWeRYQPvSY-KL~tRSGN----------E~eF 97 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIH--------NP-FRPWWERYQPVSY-KLCTRSGN----------EDEF 97 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhc--------CC-CCCceeecccceE-EeeccCCC----------HHHH
Confidence 466677666 67888999999999999964211 00 01123 4999997 67777664 9999
Q ss_pred HHHHHHHHHcCCEEEEEEecccccCCCCC-----------C-CccccCCCCCccceeeCCC-----CCccccC------C
Q 003653 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDK-----------G-PILSFRGVDNSVYYMLAPK-----GEFYNYS------G 396 (805)
Q Consensus 340 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~-----------~-~~~~~~~~~~~~yy~~~~~-----g~~~~~~------g 396 (805)
+.||+.|.+-|+|+++|+|+||++..... . ..-+|+|..++.+-...+. +...++. .
T Consensus 98 ~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~ 177 (504)
T KOG2212|consen 98 RDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRD 177 (504)
T ss_pred HHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhc
Confidence 99999999999999999999999741110 0 0124555544443222211 1111111 1
Q ss_pred Cc----cccCCCCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCcccc-c-cccCccccCcccccCCCCCChHHH
Q 003653 397 CG----NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDS-V-NVYGIPIEGDLLTTGTPLRSPPLI 470 (805)
Q Consensus 397 ~~----~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~-~-~~~g~~~~~~~~~~g~~~~~~~~~ 470 (805)
|. .|||..+..||..|++.|.+.+ ++||.|||.|+++||- .. + ++++ -+
T Consensus 178 C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMw------p~Di~~I~~------------------~l 232 (504)
T KOG2212|consen 178 CRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMW------PGDIKAILD------------------KL 232 (504)
T ss_pred ceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccC------hHHHHHHHH------------------HH
Confidence 21 4789999999999999999999 9999999999999993 21 0 0110 01
Q ss_pred HHHhcC--CCCCCceeeeeecCCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCC
Q 003653 471 DLISND--PILRGVKLIAEAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGR 547 (805)
Q Consensus 471 ~~i~~d--~~~~~~~ligE~w~~~~-~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 547 (805)
..+..| +.....+++-|..+.|+ ....+.+-. .-+.-+..|.+.+-..+++... ...|..-...+ +..
T Consensus 233 ~nLnsD~f~s~srpfi~qEVID~GgE~v~~~dY~g--~G~~TeF~f~~~ig~~~r~~~~-----~kyL~nwG~~w--Gf~ 303 (504)
T KOG2212|consen 233 HNLNSDWFPSGSKPFIYQEVIDLGGEPIKSSDYFG--NGRVTEFKFGAKLGTVIRKWNK-----MKYLKNWGEGW--GFM 303 (504)
T ss_pred hhcccccccCCCCceehhhhhhcCCceeecccccC--CceeeeeechHHHHHHHhcchh-----HHHHHhcCCcc--CcC
Confidence 111122 12224456666655542 222222211 2233345578888888887542 12222111111 123
Q ss_pred CCCceeeecccCCCcchHH-----HHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 003653 548 KPWNSINFVCAHDGFSLAD-----LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMV 622 (805)
Q Consensus 548 ~p~~~vnfv~nHD~~rl~d-----~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt 622 (805)
...++++|++|||+.|-.. .++|. ..++.+||.+++|.
T Consensus 304 ~s~~~L~FvDNHDNQR~~gagga~VltYK-------------------------------------~~~~YkmA~~FmLA 346 (504)
T KOG2212|consen 304 PSDRALVFVDNHDNQRGHGAGGASVLTYK-------------------------------------DARLYKMAVGFMLA 346 (504)
T ss_pred CCcceEEEeccCcccccCCCCcceEEEec-------------------------------------chhhhhhhhhhhee
Confidence 4458999999999987432 12211 25778999999999
Q ss_pred cC-CceEEeccccccCCCCCCCC--CC-------CCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCCCCCc
Q 003653 623 SQ-GVPMISMGDEYGHTKGGNNN--TY-------CHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA 692 (805)
Q Consensus 623 ~p-GiP~Iy~GdE~G~~~~g~~n--~y-------~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~~~~~ 692 (805)
.| |+|-+..---|-.+.....+ .+ +.|. ..---|-.+.+ .+-++.|.+||..- +...+..
T Consensus 347 ~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~-tC~~GWvCEHR-----WrqI~~Mv~FrnAV---~~t~~~~- 416 (504)
T KOG2212|consen 347 HPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDT-TCGNGWVCEHR-----WRQIRNMVNFRNAV---DGTPFTN- 416 (504)
T ss_pred cccCcchhheeeeeecCCCCCCCCCCcceecceeCCCC-cccCceeeech-----HHHHHHHHhhhhhc---CCccccc-
Confidence 99 99988665444444332221 11 1111 11113544433 35578899999863 2221111
Q ss_pred cceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCC-CCCCceEEEecCCCC
Q 003653 693 DRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKP 758 (805)
Q Consensus 693 ~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~-~~g~~w~~v~~t~~~ 758 (805)
-|++.++.|+|.|.. +-++++|...-..+..|.+ +|.++|+++++++..
T Consensus 417 -------------w~d~g~nqIaF~Rg~----kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~ 466 (504)
T KOG2212|consen 417 -------------WYDNGSNQIAFGRGN----RGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKI 466 (504)
T ss_pred -------------eeeCCCcEEEEecCC----ccEEEEeCcchhHHHHHhcCCCCCceeeeeccccc
Confidence 145568999999954 4588999987655544444 344699999987654
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=99.86 E-value=3.5e-22 Score=196.39 Aligned_cols=97 Identities=35% Similarity=0.575 Sum_probs=86.9
Q ss_pred EEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCC
Q 003653 243 EVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMIS 322 (805)
Q Consensus 243 ei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ 322 (805)
||.+++|.+++.++ .|||++++++|+|||+||||+|||+|++++... ...+|||++.||++++++
T Consensus 1 qi~~~~F~~~~~~~---~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~------------~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 1 QIYPDRFADGNGDG---GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQG------------YPSYHGYDISDYKQIDPR 65 (166)
T ss_pred CeeeccccCCCCCC---CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCC------------CCCCCCcCccccCCCCcc
Confidence 57899999966555 899999999999999999999999999996531 123699999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccC
Q 003653 323 YSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (805)
Q Consensus 323 ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~ 364 (805)
||+ ++||++||++||++||+||+|+|+||++.
T Consensus 66 ~Gt----------~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 66 FGT----------MEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred cCC----------HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 997 89999999999999999999999999974
No 41
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=6.1e-18 Score=157.58 Aligned_cols=101 Identities=53% Similarity=0.938 Sum_probs=86.8
Q ss_pred CeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCCCc
Q 003653 99 GATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGH 178 (805)
Q Consensus 99 Ga~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g~ 178 (805)
||+++++|++|+||||+|++|+|+||.+.+ ...+...++|++..++++|+|+++|+++.+|.+|+|+|+|...|..|+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~--~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~ 78 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGD--GDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGH 78 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCC--CCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccc
Confidence 889999999999999999999999997543 122334688876556678999999999999999999999988888999
Q ss_pred cccCcccccCcccceeeeccccC
Q 003653 179 YFDPTKIVLDPYAKAVISRAQFG 201 (805)
Q Consensus 179 ~~~~~~~~~DPya~~~~~~~~~~ 201 (805)
+++++++++||||+++..+..|+
T Consensus 79 ~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 79 RFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred ccCCCcEEECCCcCeEcCccccC
Confidence 99999999999999998776555
No 42
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.73 E-value=2.1e-17 Score=149.84 Aligned_cols=97 Identities=37% Similarity=0.742 Sum_probs=83.0
Q ss_pred CCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCC
Q 003653 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (805)
Q Consensus 97 plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~ 176 (805)
||||++.+++++|+||||+|++|+|+||...+ . ...++|. ...+|+|++.|+++.+|.+|+|+|+|.+.|..
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDG----S-ETRLPLT---EEYGGVWHGFLPGIKAGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCC----C-EEEEEcc---cccCCEEEEEECCCCCCCEEEEEECCccCccc
Confidence 69999999999999999999999999997432 1 2457775 34689999999999999999999999778889
Q ss_pred CccccCcccccCcccceeeeccccC
Q 003653 177 GHYFDPTKIVLDPYAKAVISRAQFG 201 (805)
Q Consensus 177 g~~~~~~~~~~DPya~~~~~~~~~~ 201 (805)
|+.+++.++++||||++++.+..|+
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~~~ 97 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLAYH 97 (103)
T ss_pred CcccCCCeEEecCCcceEcCCccCC
Confidence 9989988899999999997665443
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.65 E-value=5.7e-16 Score=139.69 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=75.5
Q ss_pred CCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCCC
Q 003653 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (805)
Q Consensus 98 lGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g 177 (805)
|||++.+++++|+||||+|++|+|+||+..+ ...+...+||.+ +.+|+|+++|+++.+|.+|+|+|++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~--~~~~~~~~~m~~---~~~gvw~~~v~~~~~g~~Y~y~i~~~------ 69 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDD--QDKVLETVQMKR---GENGVWSVTLDGDLEGYYYLYEVKVY------ 69 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCC--CCCcceeEeeec---CCCCEEEEEeCCccCCcEEEEEEEEe------
Confidence 7999999999999999999999999997532 112234678864 67899999999999999999999864
Q ss_pred ccccCcccccCcccceeeeccccCCC
Q 003653 178 HYFDPTKIVLDPYAKAVISRAQFGVL 203 (805)
Q Consensus 178 ~~~~~~~~~~DPya~~~~~~~~~~~~ 203 (805)
++....++||||+++..++.++++
T Consensus 70 --~~~~~~~~DPyA~~~~~~~~~s~i 93 (100)
T cd02860 70 --KGETNEVVDPYAKALSANGERSVD 93 (100)
T ss_pred --ceEEEEEcCcccEeEeeCCCceEE
Confidence 123457899999999988776644
No 44
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.58 E-value=2.6e-15 Score=187.61 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=82.0
Q ss_pred cEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccC
Q 003653 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (805)
Q Consensus 239 ~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~ 318 (805)
..+|-+.... .++|.+++++|+||++|||++|||+||+++.. ..+|||++.||+.
T Consensus 744 ~atyrlq~~~-----------~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~--------------gs~hGYdv~D~~~ 798 (1693)
T PRK14507 744 RATYRLQFHK-----------DFTFADAEAILPYLAALGISHVYASPILKARP--------------GSTHGYDIVDHSQ 798 (1693)
T ss_pred ceeEEEEeCC-----------CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCC--------------CCCCCCCCCCCCc
Confidence 4688887764 68999999999999999999999999998532 1259999999999
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccC
Q 003653 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (805)
Q Consensus 319 ~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~ 364 (805)
+++.||+ .++|++||++||++||+||||+|+||++.
T Consensus 799 idp~lG~----------~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 799 INPEIGG----------EEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred cCcccCC----------HHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 9999997 89999999999999999999999999984
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.45 E-value=2e-13 Score=119.17 Aligned_cols=81 Identities=36% Similarity=0.641 Sum_probs=61.1
Q ss_pred CCCeEEeCC--eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC-CCC-ceeeEEEcCcc
Q 003653 97 PFGATLRDG--GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKD-MLYGYKFDGKF 172 (805)
Q Consensus 97 plGa~~~~~--~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~-~~g-~~Y~y~i~~~~ 172 (805)
||||++.++ +++|+||||+|++|+|+++..+ ......++|.+ ...+|+|+++|++. .+| .+|+|+|++.
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~----~~~~~~~~m~~--~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~- 73 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG----SWPAEEYPMTR--KDDDGVWEVTVPGDLPPGGYYYKYRIDGD- 73 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT----SSEEEEEEEEE--ECTTTEEEEEEEGCGTTTT-EEEEEEEET-
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee----cCCCceEEeee--cCCCCEEEEEEcCCcCCCCEEEEEEEEeC-
Confidence 799999986 9999999999999999998654 12356788863 45789999999965 445 6999999865
Q ss_pred CCCCCccccCcccccCccc
Q 003653 173 SPQEGHYFDPTKIVLDPYA 191 (805)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya 191 (805)
.| ....++||||
T Consensus 74 ---~g----~~~~~~DPYA 85 (85)
T PF02922_consen 74 ---DG----ETPEVVDPYA 85 (85)
T ss_dssp ---TT----EEEEET-TT-
T ss_pred ---CC----cEEEEeCCCC
Confidence 22 2456899997
No 46
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.5e-12 Score=147.27 Aligned_cols=81 Identities=27% Similarity=0.344 Sum_probs=74.2
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
=||....+.||||++|||.|+|++|||.... ...||||++|+..++|.+|. .+.|.
T Consensus 16 FtF~~A~~~l~yl~~LGIShLY~SPIftA~p--------------GStHGYDVvD~t~InPeLGG----------~egl~ 71 (889)
T COG3280 16 FTFADARALLDYLADLGISHLYLSPIFTARP--------------GSTHGYDVVDPTEINPELGG----------EEGLE 71 (889)
T ss_pred CCHHHHHHhhHHHHhcCchheeccchhhcCC--------------CCCCCccCCCccccChhhcC----------hHHHH
Confidence 3799999999999999999999999999643 12599999999999999986 89999
Q ss_pred HHHHHHHHcCCEEEEEEecccccCC
Q 003653 341 LLVREAHKRGIEVVMDVVFNHTVEG 365 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~NH~~~~ 365 (805)
.||.++|++||.+|+|+|+||++.+
T Consensus 72 rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 72 RLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred HHHHHHHhcCCceEEEecccchhcc
Confidence 9999999999999999999999876
No 47
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.31 E-value=1.9e-12 Score=157.43 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=78.2
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
-|+|..+.++|+|||+||+|.|||+||++... .++.|++.||+.++|.||. ..++.++|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~---------------SnS~Ysi~Dyl~idP~~~~------~~~~~~d~ 186 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGG---------------SNSCYSLYDQLQLNQHFKS------QKDGKNDV 186 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC---------------CCCCccccchhhcChhhcc------cCCcHHHH
Confidence 79999999999999999999999999998542 1477999999999999985 12458999
Q ss_pred HHHHHHHHHc-CCEEEEEEecccccCCCCC
Q 003653 340 KLLVREAHKR-GIEVVMDVVFNHTVEGNDK 368 (805)
Q Consensus 340 k~lV~~aH~~-Gi~VilDvV~NH~~~~~~~ 368 (805)
++||+++|++ ||+||+|+|+|||+.+++|
T Consensus 187 ~~lV~~~h~~~Gm~~ilDvV~NHTa~ds~W 216 (1464)
T TIGR01531 187 QALVEKLHRDWNVLSITDIVFNHTANNSPW 216 (1464)
T ss_pred HHHHHHHHHhcCCEEEEEeeecccccCCHH
Confidence 9999999997 9999999999999998765
No 48
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=1e-11 Score=108.47 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=58.7
Q ss_pred CeEEeC-CeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCCC
Q 003653 99 GATLRD-GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (805)
Q Consensus 99 Ga~~~~-~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~g 177 (805)
||++.+ ++++|+||||+|++|+|+|+. + ..++|. ..++|+|+++++++ +|.+|+|+|++.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~------~---~~~~m~---~~~~G~W~~~v~~~-~g~~Y~y~v~~~------ 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD------G---EEIPMQ---RDGDGWFEAEVPGA-AGTRYRYRLDDG------ 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC------C---CcccCc---cCCCcEEEEEeCCC-CCCeEEEEECCC------
Confidence 788887 899999999999999999863 1 245664 35679999999999 999999999732
Q ss_pred ccccCcccccCccccee
Q 003653 178 HYFDPTKIVLDPYAKAV 194 (805)
Q Consensus 178 ~~~~~~~~~~DPya~~~ 194 (805)
..+.||||+++
T Consensus 62 ------~~~~DP~a~~~ 72 (85)
T cd02853 62 ------TPVPDPASRFQ 72 (85)
T ss_pred ------cCCCCCccccC
Confidence 24689999986
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.17 E-value=7e-11 Score=105.76 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=62.3
Q ss_pred eCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC-------CCCceeeEEEcCccCCC
Q 003653 103 RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-------FKDMLYGYKFDGKFSPQ 175 (805)
Q Consensus 103 ~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~-------~~g~~Y~y~i~~~~~~~ 175 (805)
.++|++|+||||+|++|+|+ +||+.|.. ..++|.+ ...|+|+++|+++ .+|..|+|+|...
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~----GdFn~W~~-~~~~m~k---~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~---- 70 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLI----GDFNNWDR-NAHPLKK---DEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP---- 70 (99)
T ss_pred CCCeEEEEEECCCCCEEEEE----ccCCCCCC-cCcccEE---CCCCEEEEEECCcccccccCCCCCEEEEEEEeC----
Confidence 46789999999999999999 89998864 3467764 2579999999985 5999999999752
Q ss_pred CCccccCcccccCcccceeeec
Q 003653 176 EGHYFDPTKIVLDPYAKAVISR 197 (805)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~~~~ 197 (805)
+|.. ...+||||+.+..+
T Consensus 71 ~G~~----~~~~DPyA~~~~~~ 88 (99)
T cd02854 71 SGEW----IDRIPAWIKYVTQD 88 (99)
T ss_pred CCCE----EEEcCcceeEEEeC
Confidence 3433 24689999998643
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.87 E-value=8.7e-09 Score=93.75 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=62.9
Q ss_pred CCCeEEeC----CeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCcc
Q 003653 97 PFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (805)
Q Consensus 97 plGa~~~~----~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~ 172 (805)
.||+++.+ ++++|+||+|.|++|+|++ +++.|.. ..++|.+ ....|+|++++++...+..|+|++.+.
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~----~~~~~~~-~~~~m~~--~~~~G~w~~~v~~~~~~~~Y~~~v~~~- 80 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVG----DFNGWDG-RRHPMRR--RGDSGVWELFIPGLGEGELYKYEILGA- 80 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEE----ECCCCCC-cceecEE--CCCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 59999988 8999999999999999985 2222221 2356643 233799999999888888899999742
Q ss_pred CCCCCccccCcccccCcccceeeec
Q 003653 173 SPQEGHYFDPTKIVLDPYAKAVISR 197 (805)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~ 197 (805)
.|.. ..+.|||++.+...
T Consensus 81 ---~g~~----~~~~DPYa~~~~~~ 98 (106)
T cd02855 81 ---DGHL----PLKADPYAFYSELR 98 (106)
T ss_pred ---CCCE----EEeeCCCceeeEeC
Confidence 2221 24689999988543
No 51
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.73 E-value=1.5e-08 Score=98.02 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHhhCcCCCCCCCCCc-cceeecCCCCCCCCCCCCCcEEEEEEEcCC---------CCEEEEEEeCCC
Q 003653 665 SDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV---------KGEIYVAFNASH 734 (805)
Q Consensus 665 ~~l~~~~~~Li~lRk~~~aL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~---------~~~~~Vv~N~~~ 734 (805)
....++++.|++||+++|.|+.++-..+ ++|.||...+. ...++|++...++. .+.++||||.+.
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~-----q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPD-----QTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT-------TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCC-----CCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 4458999999999999999999875443 56888877533 35799999998742 246999999999
Q ss_pred CcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEEEeC
Q 003653 735 LPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 800 (805)
Q Consensus 735 ~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~ 800 (805)
+++++++|...| |+..---... .+..+.+..-....++++|||+|++|||..
T Consensus 116 ~~~t~~~~~~~g--~~Lhpvq~~~------------~D~~v~~a~~~~~~G~~tVPa~T~aVFv~~ 167 (168)
T PF11852_consen 116 EEQTFTVPGLAG--FQLHPVQAES------------SDPVVKQASFDAANGTFTVPARTVAVFVQP 167 (168)
T ss_dssp S-EEEETGGGSS---EE-HHHHTG------------SGTTGGGTEEETTTTEEEE-TTEEEEEEEE
T ss_pred CeEEEEcCCcCc--eEechHHhcc------------cchhhhceeEecCCCeEEECCceEEEEEec
Confidence 999999997655 4432211110 011222222223468999999999999974
No 52
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.67 E-value=8.5e-08 Score=83.62 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=47.5
Q ss_pred CCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCce--eeEEEcCccCCCCCcccc
Q 003653 104 DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDML--YGYKFDGKFSPQEGHYFD 181 (805)
Q Consensus 104 ~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~--Y~y~i~~~~~~~~g~~~~ 181 (805)
++.++|+||||.|++|+|+++.. . ...++|.+ ...|+|+++++. .++.+ |.|+++|.
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~----~---~~~~~m~~---~~~G~W~~~v~~-l~~g~Y~Y~~~vdg~---------- 63 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWG----G---AGSHPMTK---DEAGVWSVTTGP-LAPGIYTYSFLVDGV---------- 63 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecC----C---CccEeCeE---CCCeEEEEEECC-CCCcEEEEEEEECCe----------
Confidence 35799999999999999997642 1 23567754 346999999965 44444 55555542
Q ss_pred CcccccCccccee
Q 003653 182 PTKIVLDPYAKAV 194 (805)
Q Consensus 182 ~~~~~~DPya~~~ 194 (805)
.+.||+++..
T Consensus 64 ---~~~DP~s~~~ 73 (85)
T cd02858 64 ---RVIDPSNPTT 73 (85)
T ss_pred ---EecCCCCCce
Confidence 4689998765
No 53
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.66 E-value=5.2e-08 Score=85.73 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhCcCCCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCce
Q 003653 670 FCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRW 749 (805)
Q Consensus 670 ~~~~Li~lRk~~~aL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w 749 (805)
|||+||+|||+||+|+.+++..+ .+. ....+.++++.|..++ +.++|++|++++++++. ....|
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~---~~~--------~~~~~~l~~~~r~~~~-~~l~v~~Nls~~~~~~~----~~~~~ 64 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFL---EVE--------RDAPDALLAFRRTGGG-ERLLVAFNLSDEPVTVP----EGPWG 64 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEE---EEE--------EEEETTEEEEEEEETT-EEEEEEEE-SSS-EEEE----TSCCE
T ss_pred CHHHHHHHHhhCccccCCCcccE---EEE--------ecCCCEEEEEEEEcCC-ceEEEEEecCCCcEEcc----CCCCC
Confidence 69999999999999999976542 110 1224567777776554 89999999999998888 23367
Q ss_pred EEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEE
Q 003653 750 EPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 797 (805)
Q Consensus 750 ~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 797 (805)
+.+..+..... ...++|||+|++||
T Consensus 65 ~~l~~s~~~~~-----------------------~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 65 EVLFSSEPARA-----------------------GGAGTLPPWSVVVL 89 (89)
T ss_dssp EEEEECSCSSE-------------------------EEEE-TTEEEEE
T ss_pred eEEEcCCCccc-----------------------ccCceECCCEEEEC
Confidence 77776644321 12689999999987
No 54
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.45 E-value=5.3e-07 Score=99.80 Aligned_cols=90 Identities=24% Similarity=0.330 Sum_probs=76.8
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
-|+|....++|..++++|+|.|++.|+++.+.. +--|...|...+++.+..+.. ..+.+++
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S---------------~S~YSI~Dql~~~~~~~~~~~----~~~~~~v 78 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGES---------------NSPYSIYDQLKFDPDFFPPGK----ESTFEDV 78 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCC---------------CCCccccchhhcChhhcCCCc----cccHHHH
Confidence 689999999999999999999999999996531 123999999999999886432 2357999
Q ss_pred HHHHHHHH-HcCCEEEEEEecccccCCCCC
Q 003653 340 KLLVREAH-KRGIEVVMDVVFNHTVEGNDK 368 (805)
Q Consensus 340 k~lV~~aH-~~Gi~VilDvV~NH~~~~~~~ 368 (805)
++||.+++ +.||.+|.|||+|||+.+++|
T Consensus 79 ~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 79 KEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred HHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 99999995 799999999999999988755
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.43 E-value=2.7e-07 Score=111.57 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=63.8
Q ss_pred CCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCCC
Q 003653 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (805)
Q Consensus 97 plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~~ 176 (805)
-||||....||.|+||||+|++|+|+ +||+. ....||.+. ...|+|+++|| ...+..|+|+|.. +
T Consensus 20 ~lGah~~~~g~~f~vwaP~A~~V~vv----gdfn~---~~~~~m~~~--~~~G~w~~~ip-~~~g~~YKy~i~~-----~ 84 (726)
T PRK05402 20 VLGPHPTGAGLVVRALLPGAEEVWVI----LPGGG---RKLAELERL--HPRGLFAGVLP-RKGPFDYRLRVTW-----G 84 (726)
T ss_pred hcCCCCCCCcEEEEEECCCCeEEEEE----eecCC---CccccceEc--CCCceEEEEec-CCCCCCeEEEEEe-----C
Confidence 59999998899999999999999998 78874 345677642 35699999999 9999999999973 2
Q ss_pred CccccCcccccCccccee
Q 003653 177 GHYFDPTKIVLDPYAKAV 194 (805)
Q Consensus 177 g~~~~~~~~~~DPya~~~ 194 (805)
|. .....||||...
T Consensus 85 g~----~~~k~DPyaf~~ 98 (726)
T PRK05402 85 GG----EQLIDDPYRFGP 98 (726)
T ss_pred Cc----eeEeccccccCC
Confidence 32 235789999854
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.38 E-value=1.9e-06 Score=81.36 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=82.1
Q ss_pred chhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 003653 269 KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHK 348 (805)
Q Consensus 269 ~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~ 348 (805)
-+++||++|+|+|.+.--... .|-|-|+.-....+.+. .+-|+++|++||+
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~------------------g~ayYPt~~~~~hp~L~-----------~Dllge~v~a~h~ 55 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHG------------------GYAYYPTKVGPRHPGLK-----------RDLLGEQVEACHE 55 (132)
T ss_pred HHHHHHHhCCCEEEEEccccc------------------EEEEccCCCCcCCCCCC-----------cCHHHHHHHHHHH
Confidence 468999999999997532110 12355555434444443 4779999999999
Q ss_pred cCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHHHHHHHHHcCce
Q 003653 349 RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 425 (805)
Q Consensus 349 ~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gv 425 (805)
+||+|+.=+-++ .-.. .+ ..++.|+..+++|... .+...+....+-|...+++++..++--++.|.+
T Consensus 56 ~Girv~ay~~~~-~d~~-------~~--~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 56 RGIRVPAYFDFS-WDED-------AA--ERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYDV 125 (132)
T ss_pred CCCEEEEEEeee-cChH-------HH--HhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCCC
Confidence 999998766655 2111 00 2457888888888732 111111122233345669999999999988999
Q ss_pred eEEEEcc
Q 003653 426 DGFRFDL 432 (805)
Q Consensus 426 DGfR~D~ 432 (805)
|||-||.
T Consensus 126 DGiF~D~ 132 (132)
T PF14871_consen 126 DGIFFDI 132 (132)
T ss_pred CEEEecC
Confidence 9999983
No 57
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.31 E-value=3.5e-06 Score=91.58 Aligned_cols=142 Identities=24% Similarity=0.331 Sum_probs=83.4
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~ 341 (805)
+-..+.+.|+.|+++|+|+|.+.=... ...-+.+. +.|...+..... |.+ .+-+=|+.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~-gda~Y~S~-------------~~p~s~~~~g~~-~~~-------pg~DpL~~ 74 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPR-GDALYPSD-------------IEPWSGYLTGKQ-GKD-------PGFDPLEF 74 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeC-cEEEeccc-------------ccccccccCCCC-CCC-------CCccHHHH
Confidence 446677889999999999999764332 11001100 111111000000 110 12466999
Q ss_pred HHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcccc---CCCccccCCCCHHHHHHHHHHHHH
Q 003653 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY---SGCGNTFNCNHPVVRQFIVDCLRY 418 (805)
Q Consensus 342 lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~---~g~~~~ln~~~~~vr~~i~d~l~~ 418 (805)
||++||++||+|..=+.+....... .... ..++.++.....|..... .+..--||..+|+||++|++.++-
T Consensus 75 ~I~eaHkrGlevHAW~~~~~~~~~~--~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~E 148 (311)
T PF02638_consen 75 MIEEAHKRGLEVHAWFRVGFNAPDV--SHIL----KKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKE 148 (311)
T ss_pred HHHHHHHcCCEEEEEEEeecCCCch--hhhh----hcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHH
Confidence 9999999999999888554432210 0010 112233322222221111 122235899999999999999999
Q ss_pred HHHcCceeEEEEc
Q 003653 419 WVTEMHVDGFRFD 431 (805)
Q Consensus 419 W~~e~gvDGfR~D 431 (805)
.++.|.|||+.||
T Consensus 149 iv~~YdvDGIhlD 161 (311)
T PF02638_consen 149 IVKNYDVDGIHLD 161 (311)
T ss_pred HHhcCCCCeEEec
Confidence 9999999999999
No 58
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.15 E-value=9.5e-06 Score=69.71 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=47.3
Q ss_pred CeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCC-CCceeeEEEcCc
Q 003653 105 GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF-KDMLYGYKFDGK 171 (805)
Q Consensus 105 ~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~-~g~~Y~y~i~~~ 171 (805)
++++|+||||.|++|+|+++..+ + ...++|.+ ..+|+|++.++... .+..|+|++++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~----~--~~~~~~~~---~~~g~w~~~v~~~~~~~~~Y~~~v~~~ 62 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNG----D--TQLIPMTK---VEDGYWEVELPLPSPGKYQYKYVLDGG 62 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECC----C--CCcccCEE---CCCceEEEEEcCCCCCCeEEEEEEeCC
Confidence 68999999999999999998643 1 13466743 35699999999888 899999999875
No 59
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.14 E-value=8.5e-06 Score=70.55 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCc-eeeEEEcCccCCCCCccccCcc
Q 003653 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-LYGYKFDGKFSPQEGHYFDPTK 184 (805)
Q Consensus 106 ~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~-~Y~y~i~~~~~~~~g~~~~~~~ 184 (805)
.++|++|||.|++|+|+ |+|++|. .++|.+ ...|+|+++++ ...|. .|+|.++|..
T Consensus 3 ~vtf~~~ap~a~~V~v~----G~fn~W~---~~~m~~---~~~G~w~~~~~-l~~G~y~Ykf~vdg~~------------ 59 (82)
T cd02861 3 PVVFAYRGPEADSVYLA----GSFNNWN---AIPMER---EGDGLWVVTVE-LRPGRYEYKFVVDGEW------------ 59 (82)
T ss_pred cEEEEEECCCCCEEEEE----eECCCCC---cccCEE---CCCCcEEEEEe-CCCCcEEEEEEECCEE------------
Confidence 58999999999999998 8888876 467754 23489999997 44555 7888887641
Q ss_pred cccCcccceee
Q 003653 185 IVLDPYAKAVI 195 (805)
Q Consensus 185 ~~~DPya~~~~ 195 (805)
.+.||.+....
T Consensus 60 ~~~DP~~~~~~ 70 (82)
T cd02861 60 VIVDPNAAAYV 70 (82)
T ss_pred eeCCCCCCcee
Confidence 24799987654
No 60
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=97.96 E-value=1.3e-05 Score=71.43 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEcCCCCEEEEEEeCCCC--cEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCcee
Q 003653 709 DKSRFVAFTLIDSVKGEIYVAFNASHL--PVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANL 786 (805)
Q Consensus 709 ~~~~vlaf~R~~~~~~~~~Vv~N~~~~--~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (805)
.+++++||.|.+...+.++||+|++.. ...+.++...+++|+.++++......+..... ... +. ....+..+
T Consensus 7 ~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~--~~~--v~--~~~~g~~~ 80 (95)
T PF02806_consen 7 NENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGN--SGE--VT--VDSNGRIT 80 (95)
T ss_dssp ESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSE--TSE--EE--EETTSEEE
T ss_pred CCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCccccc--Cce--EE--EeeCCEEE
Confidence 467899999985332389999999987 34555554435699999998765432221110 000 00 11134479
Q ss_pred EEeeCCeEEEEEeC
Q 003653 787 YPMLSYSSIILLLS 800 (805)
Q Consensus 787 ~~v~~~s~~vl~~~ 800 (805)
++|||+|++||..+
T Consensus 81 ~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 81 VTLPPYSALVLKLK 94 (95)
T ss_dssp EEESTTEEEEEEEE
T ss_pred EEECCCEEEEEEEc
Confidence 99999999999875
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00013 Score=80.75 Aligned_cols=141 Identities=19% Similarity=0.162 Sum_probs=82.7
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~ 341 (805)
+=..+.+.|+.|+.||||+|+..=...-. ..+.+... --.++.|.- +..+ ..-+=|+.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~--~lypS~~~------p~s~~~~~~-~~~~-------------~g~DpLa~ 119 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGD--ALYPSAVL------PWSDGLPGV-LGVD-------------PGYDPLAF 119 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCcc--cccccccc------ccccCcCcc-cCCC-------------CCCChHHH
Confidence 34566778999999999999954332211 11110000 001121110 0111 12456999
Q ss_pred HHHHHHHcCCEEEEEEecccccCCCCCC----CccccCCCCCccceeeCCCCCccccCCC--ccccCCCCHHHHHHHHHH
Q 003653 342 LVREAHKRGIEVVMDVVFNHTVEGNDKG----PILSFRGVDNSVYYMLAPKGEFYNYSGC--GNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 342 lV~~aH~~Gi~VilDvV~NH~~~~~~~~----~~~~~~~~~~~~yy~~~~~g~~~~~~g~--~~~ln~~~~~vr~~i~d~ 415 (805)
+|++||++||+|+-=+-+--++...... +...-.+.+...|+.. .|+ ..=||-.+|+||++|.+.
T Consensus 120 ~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~~ldPg~Pevq~~i~~l 190 (418)
T COG1649 120 VIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRH---------QGWGKRVWLDPGIPEVQDFITSL 190 (418)
T ss_pred HHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEec---------CCceeeeEeCCCChHHHHHHHHH
Confidence 9999999999999877766555422110 0000111111222221 111 234788999999999999
Q ss_pred HHHHHHcCceeEEEEccc
Q 003653 416 LRYWVTEMHVDGFRFDLA 433 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~a 433 (805)
+.--++.|.|||+-||--
T Consensus 191 v~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 191 VVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred HHHHHhCCCCCceeccee
Confidence 999999999999999843
No 62
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.49 E-value=0.00018 Score=82.35 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=62.6
Q ss_pred CCCcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccc
Q 003653 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTIN 315 (805)
Q Consensus 236 ~~~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~ 315 (805)
...-||||=+-- |..-... ...-+..-|.+..+-+|++|||..||.|-+-+.....+. + +.-.-||.-.|
T Consensus 562 LDSqvIYEgFSN-FQ~~~t~--~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFL------D-SiiqNGYAFtD 631 (809)
T PF02324_consen 562 LDSQVIYEGFSN-FQDFPTT--PSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFL------D-SIIQNGYAFTD 631 (809)
T ss_dssp HHT-EEEE---T-TB---SS--GGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSH------H-HHTT-SSSBS-
T ss_pred hhcchhhccccc-cccCCCC--hHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcch------h-hHhhcCccccc
Confidence 355699993321 2111111 112355677788999999999999999988765421110 0 00124888888
Q ss_pred ccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEeccccc
Q 003653 316 YFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 363 (805)
Q Consensus 316 y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~ 363 (805)
-|.+-- + .|+.+|+.++|+..|+++|+.||+||.|+|++...
T Consensus 632 RYDLg~--s----~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 632 RYDLGM--S----KPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp TT-SSS--S----S-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred hhhhcC--C----CCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 776532 2 24567789999999999999999999999999875
No 63
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.16 E-value=0.0019 Score=70.57 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++||+|++-+.+ +...+++. |+......|+....+|..+ .|.+...-+|+.||++++++.+
T Consensus 67 d~~~~i~~l~~~G~~~~~~~~P-~i~~~~~~-----~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 140 (308)
T cd06593 67 DPEGMLSRLKEKGFKVCLWINP-YIAQKSPL-----FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKD 140 (308)
T ss_pred CHHHHHHHHHHCCCeEEEEecC-CCCCCchh-----HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHH
Confidence 3789999999999999999875 45443321 1111223455555554433 2233345689999999999999
Q ss_pred HHHHHHHcCceeEEEEcccccccc
Q 003653 415 CLRYWVTEMHVDGFRFDLASIMTR 438 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~~l~~ 438 (805)
.++.++ ++|||||-+|....++.
T Consensus 141 ~~~~~~-~~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 141 KLKPLL-DMGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHHHH-HhCCcEEecCCCCCCCc
Confidence 999988 69999999998876653
No 64
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.10 E-value=0.0032 Score=68.50 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCC-Ccc---ccCCCccccCCCCHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKG-EFY---NYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g-~~~---~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.++||+++|++|+++++=+-+ ++..++.. |+......|+..+++| ..+ .+.|...-+|+.||++|+.+.
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~~-----~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~ 144 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSEN-----FREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFL 144 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCHH-----HHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHH
Confidence 3899999999999999998877 44433211 2211223455555554 211 223444568999999999999
Q ss_pred HHHHHHHHcCceeEEEEcccc
Q 003653 414 DCLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 414 d~l~~W~~e~gvDGfR~D~a~ 434 (805)
+.++..+.++|||||-+|...
T Consensus 145 ~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 145 SRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHHHhCCcEEEeCCCC
Confidence 999999989999999999764
No 65
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.89 E-value=0.0074 Score=67.66 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHH
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCL 416 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l 416 (805)
.-|+.|++.+|++||+.-|=+-+--++.++... ..++.|....++.... ....+--||+.+|+|++++.+.+
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~-------~~hPdw~l~~~~~~~~-~~r~~~vLD~~~pev~~~l~~~i 175 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLY-------REHPDWVLRDPGRPPT-LGRNQYVLDLSNPEVRDYLFEVI 175 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEESSSCHC-------CSSBGGBTCCTTSE-E-CBTTBEEB-TTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccchhHHH-------HhCccceeecCCCCCc-CcccceEEcCCCHHHHHHHHHHH
Confidence 459999999999999999999887776554321 2345565443332211 11112249999999999999999
Q ss_pred HHHHHcCceeEEEEccccccc
Q 003653 417 RYWVTEMHVDGFRFDLASIMT 437 (805)
Q Consensus 417 ~~W~~e~gvDGfR~D~a~~l~ 437 (805)
...++++|||.|.+|....+.
T Consensus 176 ~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 176 DRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp HHHHHHTT-SEEEEE-TS-TT
T ss_pred HHHHHhcCCCEEEeccccCCC
Confidence 999999999999999876664
No 66
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.87 E-value=0.0089 Score=77.06 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccC--------------------------ChhHHHHHHH
Q 003653 619 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE--------------------------SKSDFFRFCC 672 (805)
Q Consensus 619 lllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~--------------------------~~~~l~~~~~ 672 (805)
+-+|+||||=||.|.|+=.- +.-+||+|.++|+..... +..-=+..+.
T Consensus 1502 Lklt~PGVPD~YQG~E~wd~------SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~ 1575 (1693)
T PRK14507 1502 LKLTLPGVPDTYQGTEFWDF------SLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLW 1575 (1693)
T ss_pred HHHcCCCCCcccCCcccccc------cCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHH
Confidence 34899999999999996432 455667788888652110 0011235678
Q ss_pred HHHHHHhhCcCC-CCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeC-----------------CC
Q 003653 673 LLTKFRHECESL-GLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA-----------------SH 734 (805)
Q Consensus 673 ~Li~lRk~~~aL-~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~-----------------~~ 734 (805)
+++++|++||.| ..|+|..+ .-.| ...++++||.|..+. ..++||.=. .+
T Consensus 1576 ~~L~lRr~~p~lF~~G~Y~PL---~~~G--------~~~~hv~AFaR~~~~-~~~vvvvpR~~~~l~~~~~~~~~~~~~W 1643 (1693)
T PRK14507 1576 RLLADRRARPALFRDGDYRPL---KAEG--------ARAEHVVAFARRRGG-DDLVVAVPRLVARLAGEDGELPWSAEAW 1643 (1693)
T ss_pred HHHHHHHhChhhhccCCeeEE---eccC--------CccccEEEEEecCCC-cEEEEEEecchhhhhcccccCCcccCCC
Confidence 999999999986 57777663 1111 224689999998754 455554221 23
Q ss_pred CcEEEEcCCCCCCceEEEecCC
Q 003653 735 LPVIISLPKRPGYRWEPLVDTS 756 (805)
Q Consensus 735 ~~~~v~Lp~~~g~~w~~v~~t~ 756 (805)
....+.||...++.|+.++.+.
T Consensus 1644 ~dT~~~LP~~~~~~w~d~ltg~ 1665 (1693)
T PRK14507 1644 AGTVVPLVLPAGSRWVDVLTGR 1665 (1693)
T ss_pred CCCEEeCCCccCccceEeccCc
Confidence 4457889865455899999653
No 67
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.87 E-value=0.0023 Score=70.76 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCC-CCCCC-ccccCCCCCccceeeCCCCCcc----ccCCCccccCCCCHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEG-NDKGP-ILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQF 411 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~-~~~~~-~~~~~~~~~~~yy~~~~~g~~~----~~~g~~~~ln~~~~~vr~~ 411 (805)
+.++||+++|++|++|++=+.+- +..+ +.... ...+.......|+..+..|.-+ .|.|...-+|+.||++|+.
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~-i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPI-IKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-cccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 58999999999999999865542 1111 10000 0011111123466666555432 2334445699999999999
Q ss_pred HHHHHHHHHHcCceeEEEEcccc
Q 003653 412 IVDCLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 412 i~d~l~~W~~e~gvDGfR~D~a~ 434 (805)
..+.++.+++++|||||-+|+..
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999988999999999764
No 68
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.78 E-value=0.0075 Score=69.53 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=135.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHH---------cCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChH
Q 003653 398 GNTFNCNHPVVRQFIVDCLRYWVT---------EMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPP 468 (805)
Q Consensus 398 ~~~ln~~~~~vr~~i~d~l~~W~~---------e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~ 468 (805)
++|++-+||.|+..-+.++.|.|. +..+||||+||+..+..+ +..- . ++ -
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdAD--lLqi---a-----~d-----------y 201 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDAD--LLQI---A-----GD-----------Y 201 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-TH--HHHH---H-----HH-----------H
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHH--HHHH---H-----HH-----------H
Confidence 478999999999999999999986 778999999999988632 0000 0 00 0
Q ss_pred HHHHHhcCC---CCCCceeeeeecCCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCC-
Q 003653 469 LIDLISNDP---ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQG- 544 (805)
Q Consensus 469 ~~~~i~~d~---~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~- 544 (805)
|.++-..+. .-...+-|-|.|+...-..+-... +---.|+..++..+...+.......+.+...+..+...-..
T Consensus 202 fkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g--~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d 279 (809)
T PF02324_consen 202 FKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTG--NPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSND 279 (809)
T ss_dssp HHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTT--SSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE
T ss_pred HHHHhCCCcChhhHhhhheeeeccccCChHHHhcCC--CceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccC
Confidence 011110000 001335677999765321111100 11124677788888877766544445555555443221110
Q ss_pred -CCCCCCceeeecccCCCc--c-hHHHHhhcccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHH-----------H
Q 003653 545 -GGRKPWNSINFVCAHDGF--S-LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKL-----------R 609 (805)
Q Consensus 545 -~~~~p~~~vnfv~nHD~~--r-l~d~~~~~~k~n~~~ge~~~dg~~~n~sw~~g~~~~~~~~~~~~~-----------~ 609 (805)
....+...-.||.+||.. + +.+++.. +++.. .||... ..+..+.+.+.. .
T Consensus 280 ~~en~a~pNYsFvrAHDsevQ~vI~~II~~--~i~~~-----~dg~t~--------t~d~l~qAf~iYnaD~~~~~K~Yt 344 (809)
T PF02324_consen 280 STENEAQPNYSFVRAHDSEVQTVIAQIIKD--KINPN-----SDGLTF--------TLDQLKQAFEIYNADQKKTDKKYT 344 (809)
T ss_dssp --SSESS-EEEES-BSSTTTHHHHHHHHHH--HT-TT-----TCTTC----------HHHHHHHHHHHHHHHTSSS-SSS
T ss_pred CcCCcccCceeeeecccHHHHHHHHHHHHh--hcCCc-----ccCccC--------CHHHHHHHHHHHHHHHHHhhhhhh
Confidence 012234456799999985 2 2333331 12111 011100 000000011000 0
Q ss_pred HHHHHHHHHHHHhc-CCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCCCCC
Q 003653 610 RRQMRNFFLCLMVS-QGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSD 688 (805)
Q Consensus 610 ~~~~r~a~alllt~-pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~~g~ 688 (805)
.-.+-.++|+||+- --||-+||||-+-..++ | |. .+ ..-++-+-.|++-|.++-+-...
T Consensus 345 ~yNiPsaYAllLtNKDTVPRVYYGDLYtDdGQ-----Y--------Ma--~K----SpYyDaI~tLLKaRikYvaGGQt- 404 (809)
T PF02324_consen 345 QYNIPSAYALLLTNKDTVPRVYYGDLYTDDGQ-----Y--------MA--TK----SPYYDAITTLLKARIKYVAGGQT- 404 (809)
T ss_dssp -S-HHHHHHHHHH-SSSEEEEEHHHHBESSSS-----T--------TT--SB-----TTHHHHHHHHHHHHHH--S-EE-
T ss_pred ccccHHHHHHHHhCCCCCceEEecccccccch-----h--------hh--hc----CchHHHHHHHHHHHHHhhcCCce-
Confidence 01234567777776 59999999998765321 1 11 11 34478889999999997553221
Q ss_pred CCCccceeecCCCCCCCCCCCCCcEEEEEEEcCC--------------CCEEEEEEeCCCC----cEEEEcCCC---CCC
Q 003653 689 FPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV--------------KGEIYVAFNASHL----PVIISLPKR---PGY 747 (805)
Q Consensus 689 ~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~--------------~~~~~Vv~N~~~~----~~~v~Lp~~---~g~ 747 (805)
+. +.+.+ .+..+++.=.|.+.. .+..+|+-|...- ..+|.|.-. ...
T Consensus 405 -M~---~~~~~--------~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ 472 (809)
T PF02324_consen 405 -MA---VTYLN--------GDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQ 472 (809)
T ss_dssp -EE---E--EE--------ETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-
T ss_pred -ee---eeccc--------CCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccc
Confidence 01 00000 013468887776532 1245556665542 134555442 256
Q ss_pred ceEEEecCCCC
Q 003653 748 RWEPLVDTSKP 758 (805)
Q Consensus 748 ~w~~v~~t~~~ 758 (805)
.+|.|+.+...
T Consensus 473 ~YR~llltT~~ 483 (809)
T PF02324_consen 473 AYRPLLLTTKD 483 (809)
T ss_dssp EEEEEEEEESS
T ss_pred cchhhhhcccc
Confidence 78888876543
No 69
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.67 E-value=0.0034 Score=68.73 Aligned_cols=95 Identities=14% Similarity=0.268 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+. .++..+... . |+......|+..+++|.-+ .+.+.+.-+|+.||++|+...+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~--~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 72 GLDELIEELKARGIRVLTYIN-PYLADDGPL--Y--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CceecCCch--h--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 488999999999999999554 444332211 0 1212223456666655432 2334445789999999999999
Q ss_pred HHHHHHHcCceeEEEEccccccc
Q 003653 415 CLRYWVTEMHVDGFRFDLASIMT 437 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~~l~ 437 (805)
.++..+.++|||||=+|....++
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCCC
Confidence 99988668999999999765443
No 70
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.0027 Score=74.53 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=69.1
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEF 339 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~ 339 (805)
-|.+.....+|.-.|+-|+|-|++.|+++-... +--|...|--.+++.+.+.. +.-+.+|.
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S---------------~S~YSl~dql~~~~~~~~~~----~k~s~eDV 198 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLS---------------RSCYSLADQLELNPDFSRPN----RKYSFEDV 198 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccC---------------CCccchHhhhhcChhhhccC----CCCCHHHH
Confidence 578888999999999999999999999995421 12366665555555555311 11248999
Q ss_pred HHHHHHHHH-cCCEEEEEEecccccCCCCC
Q 003653 340 KLLVREAHK-RGIEVVMDVVFNHTVEGNDK 368 (805)
Q Consensus 340 k~lV~~aH~-~Gi~VilDvV~NH~~~~~~~ 368 (805)
++||+.+|+ -+|--|-|||+|||+..+.|
T Consensus 199 ~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 199 GQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred HHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 999999995 79999999999999987654
No 71
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.39 E-value=0.0035 Score=53.33 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEe
Q 003653 710 KSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPM 789 (805)
Q Consensus 710 ~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 789 (805)
.+++++|.|..++ +.++|++|.+++++++++.. +.+++.+. ....+++++. .. .-...++|
T Consensus 8 ~~gvYvYfR~~~~-~tVmVilN~n~~~~~ldl~r-----y~E~l~~~-~~~~diltg~----~i--------~l~~~l~l 68 (78)
T PF10438_consen 8 QDGVYVYFRYYDG-KTVMVILNKNDKEQTLDLKR-----YAEVLGGF-TSAKDILTGK----TI--------DLSKNLTL 68 (78)
T ss_dssp BTTEEEEEEEESS-EEEEEEEE-SSS-EEEEGGG-----GHHHHTT---EEEETTT------EE--------E-SSEEEE
T ss_pred cCCEEEEEEEcCC-CEEEEEEcCCCCCeEEcHHH-----HHHhhCCC-cceEECCCCC----EE--------ecCCcEEE
Confidence 5689999999876 89999999999999998864 33333221 1233444433 10 11258999
Q ss_pred eCCeEEEEEe
Q 003653 790 LSYSSIILLL 799 (805)
Q Consensus 790 ~~~s~~vl~~ 799 (805)
||++++||..
T Consensus 69 ~~~~~~ILel 78 (78)
T PF10438_consen 69 PPKSVLILEL 78 (78)
T ss_dssp -TTEEEEEEE
T ss_pred CCCceEEEEC
Confidence 9999999863
No 72
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.34 E-value=0.01 Score=65.62 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHHHH
Q 003653 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCL 416 (805)
Q Consensus 340 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d~l 416 (805)
++||+++|++|++|++-+.+. +..+........++.-....||..+.+|..+ .|.|.+.-+|+.||++++...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~-v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPA-ISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCc-cccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 999999999999999976533 3222100001111111123455555555432 234444568999999999999999
Q ss_pred HHHHHcCceeEEEEcccc
Q 003653 417 RYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 417 ~~W~~e~gvDGfR~D~a~ 434 (805)
+.++.++|||||=+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999978999999999765
No 73
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.32 E-value=0.0084 Score=65.74 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc--ccCCCccccCCCCHHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~--~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
+.++||+++|++|++||+-+. -++..++.. |+......|+..+..|..+ .|.|...-+|+.||++++...+.
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~-P~v~~~~~~-----y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIW-PTFGPETEN-----YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CCcCCCChh-----HHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 368999999999999999554 334332211 2212223455555544422 23343457999999999998887
Q ss_pred HHHHHHcCceeEEEEcccc
Q 003653 416 LRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~a~ 434 (805)
++..+.++|||||=+|...
T Consensus 141 ~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 141 LKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHhhcCCCcEEEecCCC
Confidence 7665669999999999775
No 74
>smart00632 Aamy_C Aamy_C domain.
Probab=96.17 E-value=0.028 Score=48.42 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCC-CCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCcee
Q 003653 708 SDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANL 786 (805)
Q Consensus 708 ~~~~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~-~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (805)
..++.+++|.| ++..+|++|.+...++..+.. ++.+.|++++.... ++. .+.+. ..+..+
T Consensus 5 ~~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~-------~g~----~v~V~----~~G~~~ 65 (81)
T smart00632 5 DNGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLC-------TGK----SVTVG----SNGIAT 65 (81)
T ss_pred ECCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecCcc-------cCC----EEEEC----CCCEEE
Confidence 34456999999 367899999998777776644 34357999887511 111 00100 023478
Q ss_pred EEeeCCeEEEEEe
Q 003653 787 YPMLSYSSIILLL 799 (805)
Q Consensus 787 ~~v~~~s~~vl~~ 799 (805)
++|||.+++++..
T Consensus 66 ~~l~~~~~v~i~~ 78 (81)
T smart00632 66 FTLPAGGAVAIHV 78 (81)
T ss_pred EEECCCCeEEEEE
Confidence 9999999555443
No 75
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.15 E-value=0.01 Score=64.96 Aligned_cols=91 Identities=14% Similarity=0.278 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc----ccCCCccccCCCCHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~----~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.++||+++|++|++|++-+.+- +..+++ . |+......||..+.+|... .+.|.+.-+|+.||++++...
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~---~--y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHP---R--YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCH---H--HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHH
Confidence 48899999999999999866543 322221 1 2212223455554443311 233444468999999999999
Q ss_pred HHHHHHHHcCceeEEEEcccc
Q 003653 414 DCLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 414 d~l~~W~~e~gvDGfR~D~a~ 434 (805)
+.++.-+.+.|||||=+|...
T Consensus 148 ~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 148 EGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHHhcCCCcEEEecCCC
Confidence 999776669999999999654
No 76
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.04 E-value=0.26 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFN 360 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~N 360 (805)
-++++++.+.||++||++|.|+-+.
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecc
Confidence 3457788888999999999999864
No 77
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.86 E-value=0.021 Score=62.61 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+.+|++|++|++-+.+- ...+... + .+.......||...++|..+ .|.|...-+|+.||++++...+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~-~--~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~ 140 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY-S--PFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAG 140 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC-h--HHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHH
Confidence 46899999999999999966433 3222111 1 11111113455555555422 2334334689999999999999
Q ss_pred HHHHHHHcCceeEEEEcccc
Q 003653 415 CLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~ 434 (805)
.++..+.++|||||=+|...
T Consensus 141 ~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 141 LFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHhhcCCCceEEeeCCC
Confidence 99998889999999999764
No 78
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.71 E-value=0.028 Score=48.24 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=39.9
Q ss_pred eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCc
Q 003653 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (805)
Q Consensus 106 ~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~ 171 (805)
.|+|+..+ .|++|.|. |+|++|.. .+||.+. .++ |.+.++-......|+|.++|.
T Consensus 3 ~v~f~~~~-~a~~V~v~----G~F~~W~~--~~pm~~~---~~~-~~~~~~L~~g~y~YkF~Vdg~ 57 (79)
T cd02859 3 PTTFVWPG-GGKEVYVT----GSFDNWKK--KIPLEKS---GKG-FSATLRLPPGKYQYKFIVDGE 57 (79)
T ss_pred EEEEEEcC-CCcEEEEE----EEcCCCCc--cccceEC---CCC-cEEEEEcCCCCEEEEEEECCE
Confidence 47899888 89999998 88988875 5788642 334 999886433445777888764
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.65 E-value=0.072 Score=57.78 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=82.2
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccC---CccccccCCCCCCCCCCCCCCCCCcHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWG---YSTINYFSPMISYSSAGIRNCGHDAINE 338 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wG---Y~~~~y~~~~~~ygt~~~~~~~~~~~~e 338 (805)
+=..+.+.|+.|++-|+|+|-+= .-. .+| |....--+ ...|.. ...+.+
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVID----vKd----------------d~G~i~y~s~~~~~--~~~ga~------~~~i~D 62 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVID----VKD----------------DDGNITYDSQVPLA--REIGAV------KPYIKD 62 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEE----Eec----------------CCceEEecCCCchh--hhcccc------cccccC
Confidence 33456666799999999999752 110 133 33322111 122221 112578
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCc-cccCCCccccCCCCHHHHHHHHHHHH
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF-YNYSGCGNTFNCNHPVVRQFIVDCLR 417 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~-~~~~g~~~~ln~~~~~vr~~i~d~l~ 417 (805)
+++|+++||++||.+|.=+|.= .+. .+.. .++.|.....+|.. .+..+ ..=+|..+++||+|+++.++
T Consensus 63 ~~~l~~~l~e~gIY~IARIv~F---kD~----~la~---~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~ 131 (316)
T PF13200_consen 63 LKALVKKLKEHGIYPIARIVVF---KDP----VLAE---AHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAK 131 (316)
T ss_pred HHHHHHHHHHCCCEEEEEEEEe---cCh----HHhh---hChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998831 111 1110 12334333333432 22222 12367788999999999999
Q ss_pred HHHHcCceeEEEEccccc
Q 003653 418 YWVTEMHVDGFRFDLASI 435 (805)
Q Consensus 418 ~W~~e~gvDGfR~D~a~~ 435 (805)
..+ .+|+|.+-||=+..
T Consensus 132 Eaa-~~GFdEIqfDYIRF 148 (316)
T PF13200_consen 132 EAA-KLGFDEIQFDYIRF 148 (316)
T ss_pred HHH-HcCCCEEEeeeeec
Confidence 988 88999999996643
No 80
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.56 E-value=0.086 Score=61.52 Aligned_cols=142 Identities=14% Similarity=0.227 Sum_probs=73.5
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCC-----CCCCCCCCCCCCCcH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMI-----SYSSAGIRNCGHDAI 336 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-----~ygt~~~~~~~~~~~ 336 (805)
+.....+.|+.|++.-||.|++==.+ |.-...+..+. .+-.-. .+.-..
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~-----------------------~rH~~Pl~~~~~~~~~~w~D~~---~r~i~~ 169 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWM-----------------------YRHHKPLPGTNGQPDQTWTDWA---NRQIST 169 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS-------------------------SBTTB-S-SSS-EEE-TT-TTT-----EEEH
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeec-----------------------cccCCcCCCCCCchhhhhhhhc---CCEehH
Confidence 55667778999999999999964222 22211111111 110000 011237
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCC----ccccC-CCc---cccCCCCHHH
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGE----FYNYS-GCG---NTFNCNHPVV 408 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~----~~~~~-g~~---~~ln~~~~~v 408 (805)
+-+|.+|++||+.||++|.=.-..-...+-. -.|.. +.|+....++. .+.+. ++. --+|..|+.=
T Consensus 170 ~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~------~~gv~-~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~W 242 (559)
T PF13199_consen 170 STVKDYINAAHKYGMKAMAYNMIYAANNNYE------EDGVS-PEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEW 242 (559)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESSEEETT--------S--SS--GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHH
T ss_pred HHHHHHHHHHHHcCcceehhHhhhccccCcc------cccCC-chhhhhhccCCCccceeecCcccccceEEecCCCHHH
Confidence 8899999999999999987433322211100 01122 22433222211 11221 111 2368899999
Q ss_pred HHHHHHHHHHHHHcCceeEEEEcccccc
Q 003653 409 RQFIVDCLRYWVTEMHVDGFRFDLASIM 436 (805)
Q Consensus 409 r~~i~d~l~~W~~e~gvDGfR~D~a~~l 436 (805)
|++|++.+...++.+|+|||.+|..+..
T Consensus 243 Q~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 243 QNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 9999999999999999999999988844
No 81
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=95.41 E-value=0.032 Score=44.74 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=28.7
Q ss_pred EEEEcCCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEE
Q 003653 716 FTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSI 795 (805)
Q Consensus 716 f~R~~~~~~~~~Vv~N~~~~~~~v~Lp~~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~ 795 (805)
-.|.++ +..+++++|+++++++++||. .+.+++++... ...++|+|+.+.
T Consensus 5 ~~R~~~-~~~y~F~~N~s~~~~~v~l~~----~~~dll~g~~~-------------------------~~~~~L~p~~v~ 54 (58)
T PF08533_consen 5 TVREND-GGRYLFLLNFSDEPQTVTLPE----SYTDLLTGETV-------------------------SGGLTLPPYGVR 54 (58)
T ss_dssp EE-----ETTEEEEEE-SSS-EE----T----T-EEEES--------------------------------SEE-TTEEE
T ss_pred EEEEcC-CCEEEEEEECCCCCEEEEcCC----CceecccCcce-------------------------eeEEEECCCEEE
Confidence 345444 378999999999999999965 68888865331 133899999999
Q ss_pred EEE
Q 003653 796 ILL 798 (805)
Q Consensus 796 vl~ 798 (805)
||.
T Consensus 55 Vl~ 57 (58)
T PF08533_consen 55 VLK 57 (58)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 82
>PLN02635 disproportionating enzyme
Probab=95.30 E-value=0.054 Score=62.96 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEec
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVF 359 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~ 359 (805)
++++++-+.||++||++|-|+-+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeec
Confidence 45778888999999999999985
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.24 E-value=0.021 Score=65.69 Aligned_cols=97 Identities=22% Similarity=0.378 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHH
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~ 413 (805)
.++++|++.+|++|++|++-+.+ +....+. ....++......|+..+++|..+ .|.|.+.-+|+.+|++++...
T Consensus 83 Pd~~~~~~~l~~~G~~~~~~~~P-~v~~~~~--~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 159 (441)
T PF01055_consen 83 PDPKQMIDELHDQGIKVVLWVHP-FVSNDSP--DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWK 159 (441)
T ss_dssp TTHHHHHHHHHHTT-EEEEEEES-EEETTTT--B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHH
T ss_pred cchHHHHHhHhhCCcEEEEEeec-ccCCCCC--cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHH
Confidence 36899999999999999998887 3333321 01112111223455555555322 233334578999999999999
Q ss_pred HHHHHHHHcCceeEEEEcccccc
Q 003653 414 DCLRYWVTEMHVDGFRFDLASIM 436 (805)
Q Consensus 414 d~l~~W~~e~gvDGfR~D~a~~l 436 (805)
+.++..++.+|||||-+|.....
T Consensus 160 ~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 160 EQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHhccCCceEEeecCCcc
Confidence 99999997789999999986443
No 84
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.12 E-value=0.046 Score=60.49 Aligned_cols=92 Identities=23% Similarity=0.367 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+.+ |+..+.. ...|+......||..+.+|..+ .|.|...-+|+.||++++...+
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~~---~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDPG---YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGS 140 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCCC---ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHH
Confidence 4689999999999999987654 2222110 0111111123455555555432 2334444589999999999999
Q ss_pred HHHHHHHcCceeEEEEcccc
Q 003653 415 CLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~ 434 (805)
.++..+ +.|||||=+|...
T Consensus 141 ~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 141 LYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHHh-hCCCceEeecCCC
Confidence 999887 8999999999765
No 85
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.11 E-value=0.049 Score=59.70 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+.+ ++..+++. + -++.....++....+|..+ .+.|.+.-+|+.||++++...+
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P-~v~~~~~~---y-~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEP-FVLKNSKN---W-GEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHD 145 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcC-cccCCchh---H-HHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHH
Confidence 3689999999999999998753 22222211 1 0111222224444444322 2234445689999999999999
Q ss_pred HHHHHHHcCceeEEEEcccc
Q 003653 415 CLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~ 434 (805)
.++..+ ++|||||=+|...
T Consensus 146 ~~~~~~-~~Gvdg~w~D~~E 164 (317)
T cd06598 146 NYKKLI-DQGVTGWWGDLGE 164 (317)
T ss_pred HHHHhh-hCCccEEEecCCC
Confidence 998875 8999999999764
No 86
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.08 E-value=0.041 Score=66.06 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+.+ +...+++ .|+......||..+++|..+ .|.+...-+|+.||++|+...+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~-----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~ 399 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP-----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYAD 399 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch-----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHH
Confidence 4688999999999999987654 2332221 11111223466666666543 2334445689999999999999
Q ss_pred HHHHHHHcCceeEEEEcccccccc
Q 003653 415 CLRYWVTEMHVDGFRFDLASIMTR 438 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~~l~~ 438 (805)
.++.++ ++|||||-.|....++.
T Consensus 400 ~~~~l~-d~Gvdgfw~D~gE~~p~ 422 (665)
T PRK10658 400 KLKGLL-DMGVDCFKTDFGERIPT 422 (665)
T ss_pred HHHHHH-hcCCcEEEecCCceeec
Confidence 999987 79999999997766653
No 87
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=94.77 E-value=0.011 Score=68.70 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=62.2
Q ss_pred HHHhcCCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccC-------Chh-H--------HHHHHHHHHHHHhhCc
Q 003653 619 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-------SKS-D--------FFRFCCLLTKFRHECE 682 (805)
Q Consensus 619 lllt~pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~-------~~~-~--------l~~~~~~Li~lRk~~~ 682 (805)
+-||.||||=||.|.|.-.. +--++++|.+.|...... .+. . =...+.+++++|++++
T Consensus 714 lkltaPGVPD~YQGtE~wd~------SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~ 787 (889)
T COG3280 714 LKLTAPGVPDIYQGTELWDF------SLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP 787 (889)
T ss_pred HHHcCCCCCccccchhhhhc------cccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch
Confidence 34899999999999995432 334455666666543210 000 0 1235678999999998
Q ss_pred C-CCCCCCCCccceeecCCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeC
Q 003653 683 S-LGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA 732 (805)
Q Consensus 683 a-L~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~Vv~N~ 732 (805)
. |+.|+|..+. -+| ...++++||.|.... +.++++.+.
T Consensus 788 elF~~GdY~Pl~---~~G--------~~a~hviAFaR~~~~-~~~i~v~Pr 826 (889)
T COG3280 788 ELFAGGDYLPLF---AAG--------PAADHVIAFARGKDD-QFAITVAPR 826 (889)
T ss_pred HhhcCCCeeeec---ccC--------chhHHHHHHhhccCC-ceeEEeehH
Confidence 8 7888887731 111 124789999998765 566666664
No 88
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=94.71 E-value=0.23 Score=59.24 Aligned_cols=137 Identities=9% Similarity=-0.038 Sum_probs=76.6
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~ 341 (805)
+-+.+...|+.||++|+|+|+|.-..+-.....+ +..|-.|-|-|. -++-| +-+.-
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~-------~s~yfP~~~lp~----r~d~f-------------~~~aw 387 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLV-------KELYFPNRLLPM----RADLF-------------NRVAW 387 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccc-------cccccCcccccc----ccCCc-------------CHHHH
Confidence 3467777899999999999999987553321110 001111222222 11111 12222
Q ss_pred HHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeC--CCCCccccCCCccccCCCCHHHHHHHHHHHHHH
Q 003653 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA--PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 419 (805)
Q Consensus 342 lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~--~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W 419 (805)
.+ +|++|++|..-+-+=-+.-.... +.. ...... +.....+ +...|+..+|+||+.|.++..-.
T Consensus 388 ~l--~~r~~v~v~AWmp~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~---~~~rl~P~~pe~r~~i~~i~~dl 453 (671)
T PRK14582 388 QL--RTRAGVNVYAWMPVLSFDLDPTL-PRV--------KRLDTGEGKAQIHPE---QYRRLSPFDDRVRAQVGMLYEDL 453 (671)
T ss_pred HH--HHhhCCEEEEeccceeeccCCCc-chh--------hhccccCCccccCCC---CCcCCCCCCHHHHHHHHHHHHHH
Confidence 33 89999999876654322211100 000 000000 0000001 12348889999999999999999
Q ss_pred HHcCceeEEEEcccccc
Q 003653 420 VTEMHVDGFRFDLASIM 436 (805)
Q Consensus 420 ~~e~gvDGfR~D~a~~l 436 (805)
++.+.|||+-||-=..+
T Consensus 454 a~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 454 AGHAAFDGILFHDDAVL 470 (671)
T ss_pred HHhCCCceEEecccccc
Confidence 98899999999743333
No 89
>PRK10426 alpha-glucosidase; Provisional
Probab=94.09 E-value=0.095 Score=62.72 Aligned_cols=95 Identities=9% Similarity=0.159 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccc---cCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN---YSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~---~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+-+-- ..+.+ .|+......|+..+++|.-+. +.+.+.-+|+.||++|+...+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v-~~~~~-----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~ 343 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYL-ASDGD-----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKE 343 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCcc-CCCCH-----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHH
Confidence 488999999999999999866432 22211 111112234666666554331 222234689999999999999
Q ss_pred HHHHHHHcCceeEEEEcccccccc
Q 003653 415 CLRYWVTEMHVDGFRFDLASIMTR 438 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~~l~~ 438 (805)
.++..+.++|||||=.|....++.
T Consensus 344 ~~~~~~~~~Gvdg~w~D~~E~~p~ 367 (635)
T PRK10426 344 VIKKNMIGLGCSGWMADFGEYLPT 367 (635)
T ss_pred HHHHHHhhcCCCEEeeeCCCCCCC
Confidence 987777799999999998776653
No 90
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=93.79 E-value=0.14 Score=56.76 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+++|++|++|++-+.+--..... ...|+......|+..+++|.-+ .|.|...-+|+.||++++...+
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~----~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 140 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG----YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWAS 140 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC----CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHH
Confidence 47899999999999999987643321110 0011111223466656655332 2445455789999999999999
Q ss_pred HHHHHHH--cCceeEEEEcccc
Q 003653 415 CLRYWVT--EMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~--e~gvDGfR~D~a~ 434 (805)
.++..+. ..|+|||=+|+..
T Consensus 141 ~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 141 LFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHhhcccCCCceEEeccCC
Confidence 9998875 4699999999653
No 91
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=93.15 E-value=1.1 Score=57.64 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCCcChhhhccchhHHHHcCCceEEECcccccC
Q 003653 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290 (805)
Q Consensus 258 ~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~ 290 (805)
-..|||..+.+-++.+++.|.+.|+|+|++...
T Consensus 740 ~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~ 772 (1221)
T PRK14510 740 WGIGDFEELYALVDFLAEGGQSLWGVNPLHPLG 772 (1221)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 357999999999999999999999999998853
No 92
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.79 E-value=0.19 Score=54.37 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~ 417 (805)
+.++||+++|++|++||+-+.+........ . .|+. +.... + .....+...-+|+.+|+.++...+.+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~--~--~y~~------~~~~~-~-~~~~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHE--D--QYPE------MAKAL-G-VDPATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCc--H--HHHH------HHHhc-C-CCcccCCeEEecCCCHHHHHHHHHHHH
Confidence 479999999999999999887643111110 0 0100 00000 0 000111112578999999998777776
Q ss_pred HHHHcCceeEEEEccc
Q 003653 418 YWVTEMHVDGFRFDLA 433 (805)
Q Consensus 418 ~W~~e~gvDGfR~D~a 433 (805)
.-+.++|||||=.|..
T Consensus 143 ~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 143 RPLEKQGVDFWWLDWQ 158 (292)
T ss_pred HHHHhcCCcEEEecCC
Confidence 6666899999999954
No 93
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=91.97 E-value=0.4 Score=59.32 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCcc---ccCCCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~~ln~~~~~vr~~i~d 414 (805)
+.++||+.+|++|+++|+=+.+ ++..+. .+..++......+|..+++|.-+ .|.|...-.|+.||++|++..+
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d~---gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~ 317 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAEE---GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWAN 317 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccCC---CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHH
Confidence 4689999999999999875433 222111 01112111123455555556533 2233333468999999999999
Q ss_pred HHHHHHHcCceeEEEEcccc
Q 003653 415 CLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~ 434 (805)
.++.++ +.|||||=+|+-.
T Consensus 318 ~~k~l~-d~GVDG~W~DmnE 336 (978)
T PLN02763 318 LVKDFV-SNGVDGIWNDMNE 336 (978)
T ss_pred HHHHHh-cCCCcEEEccCCC
Confidence 999888 7999999999754
No 94
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.84 E-value=0.35 Score=58.93 Aligned_cols=93 Identities=20% Similarity=0.373 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccC---CCccccCCCCHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYS---GCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~---g~~~~ln~~~~~vr~~i~d 414 (805)
+.|+||+.+|++||++|.=+.+.=... ++. ++-.....|+..+++|..+.+. +.+.-+|+.||++|+...+
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~d-~~~-----~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~ 395 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQD-SPL-----FKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWAS 395 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccccccC-Cch-----HHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHH
Confidence 456999999999999998776543322 211 1111224466677777655433 3345689999999999995
Q ss_pred -HHHHHHHcCceeEEEEccccccc
Q 003653 415 -CLRYWVTEMHVDGFRFDLASIMT 437 (805)
Q Consensus 415 -~l~~W~~e~gvDGfR~D~a~~l~ 437 (805)
....++ ++|||||=.|...-..
T Consensus 396 ~~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 396 DKKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHhHHH-hcCccEEEccCCCCcc
Confidence 444565 9999999999875543
No 95
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=91.47 E-value=0.6 Score=49.38 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
.+++++.|+.+|++|+||++=+-.+|.+.. + ....+++-++.+++.
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~----------------~------------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAG----------------F------------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCC----------------c------------------cccCCHHHHHHHHHH
Confidence 688999999999999999998866554321 0 011234567777788
Q ss_pred HHHHHHcCceeEEEEcc
Q 003653 416 LRYWVTEMHVDGFRFDL 432 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~ 432 (805)
+..+++.||+||+-+|-
T Consensus 96 l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 96 IVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHhCCCceEEee
Confidence 88888899999999984
No 96
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.32 E-value=0.21 Score=53.12 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=42.3
Q ss_pred hhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003653 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~ 344 (805)
-..+.++.||++|+|+|=|.-.++. +. .+.+.+-. .....+.|+++|+
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~---------------------~~-----~~~~~~~~------~~~~~~~ld~~v~ 69 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA---------------------YQ-----EPNPGYNY------DETYLARLDRIVD 69 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS---------------------TS-----TTSTTTSB------THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH---------------------hc-----CCCCCccc------cHHHHHHHHHHHH
Confidence 3445689999999999998665421 11 01111100 0124899999999
Q ss_pred HHHHcCCEEEEEEecc
Q 003653 345 EAHKRGIEVVMDVVFN 360 (805)
Q Consensus 345 ~aH~~Gi~VilDvV~N 360 (805)
+|+++||+||+|+--.
T Consensus 70 ~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 70 AAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHTT-EEEEEEEES
T ss_pred HHHhCCCeEEEEeccC
Confidence 9999999999988654
No 97
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=91.02 E-value=0.84 Score=41.68 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=42.0
Q ss_pred CCCeEEeCCeEEEEEEcCC--CCeEEEEEEeCCCccCCceeeeeecccccCC-CCCEEEEEEcCCCCCceeeEEEc
Q 003653 97 PFGATLRDGGVNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGDFKDMLYGYKFD 169 (805)
Q Consensus 97 plGa~~~~~~~~F~vwap~--a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~-~~gvW~~~v~~~~~g~~Y~y~i~ 169 (805)
|+|| +.++|+|+++. +.+|.|++..+.+.+ . ...++|.+.... ...+|++.|+-...-..|.|++.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~--~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKG--E-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCCCC--C-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 7888 78999999874 578888776543111 1 236778654322 23689999975443345566663
No 98
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=89.80 E-value=0.93 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecc
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFN 360 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~N 360 (805)
++++++-+.|+++||++|-|+-+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 446777788999999999999864
No 99
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=89.75 E-value=3.8 Score=49.58 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.6
Q ss_pred CCCcChhhhccchhHHHHcCCceEEECcccc
Q 003653 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHE 288 (805)
Q Consensus 258 ~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~ 288 (805)
-..|||..+.+-++.+++.|.+.++|+|++.
T Consensus 159 ~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 159 WGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred CCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3469999988888999999999999999984
No 100
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=88.55 E-value=2.1 Score=47.64 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.+|+|++|+-|.++||.||-.+- +.|+..-....|.+...+.+. |. ..........||..+|++.+++.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~--~~-------~~~~~~~~~~L~~~~~~t~~fl~ 138 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAV--WR-------KYCPEPPCGQLNPTNPKTYDFLK 138 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCCCcc--cc-------ccccCCCCccccCCChhHHHHHH
Confidence 489999999999999999999996 788854211111111111000 00 00011123468999999999999
Q ss_pred HHHHHHHHcCc
Q 003653 414 DCLRYWVTEMH 424 (805)
Q Consensus 414 d~l~~W~~e~g 424 (805)
+++...++-|.
T Consensus 139 ~vl~E~~~lF~ 149 (348)
T cd06562 139 TLFKEVSELFP 149 (348)
T ss_pred HHHHHHHHhcC
Confidence 99999996454
No 101
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=88.47 E-value=0.74 Score=36.75 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=36.6
Q ss_pred EEEEEeCCCCcEEEEcCC-CCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeEEeeCCeEEEE
Q 003653 726 IYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 797 (805)
Q Consensus 726 ~~Vv~N~~~~~~~v~Lp~-~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 797 (805)
++|++|.+...+++.+.. .++..|.+++..... .+..+ ..+.+.|+|||.|..|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~---~vtid--------------~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSE---TVTID--------------EDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSS---EEEE---------------TTSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCC---eEEEC--------------CCeEEEEEECCCEEEEe
Confidence 466779999888888887 357788887754331 11111 14679999999999987
No 102
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=0.66 Score=49.91 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
..-|++|++.||+.||+||+||-+.-
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 56699999999999999999997653
No 103
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.30 E-value=3.6 Score=45.88 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccc-cCCCccccCCCCHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN-YSGCGNTFNCNHPVVRQFI 412 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~-~~g~~~~ln~~~~~vr~~i 412 (805)
+.+|++++|+-|.++||+||-.+- +.|+..--...|.+.-.+ +...+.. .....+.||..+|.+.+++
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~----------~~~~~~~~~~~~~~~L~~~~~~t~~f~ 153 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTG----------GPGSVVSVQGVVSNVLCPGKPETYTFL 153 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCC----------CCCccccccCcCCCccCCCChhHHHHH
Confidence 599999999999999999999986 788743111111111000 0000001 1112357899999999999
Q ss_pred HHHHHHHHHcC
Q 003653 413 VDCLRYWVTEM 423 (805)
Q Consensus 413 ~d~l~~W~~e~ 423 (805)
.+.+...++-|
T Consensus 154 ~~ll~E~~~lF 164 (357)
T cd06563 154 EDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHhC
Confidence 99999998544
No 104
>PLN02950 4-alpha-glucanotransferase
Probab=87.14 E-value=9.3 Score=47.77 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=41.7
Q ss_pred CCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCC
Q 003653 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (805)
Q Consensus 259 ~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt 325 (805)
..|+|..+.+-++.+++.|.+.|+|+|+++......+ ..+--|.+.+=|+.++-|=+
T Consensus 278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~----------~~SsPYs~~S~falNPlyI~ 334 (909)
T PLN02950 278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMW----------WDSYPYSSLSVFALHPLYLR 334 (909)
T ss_pred CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCC----------CCCCCcCcccccccChhhcC
Confidence 4699998888899999999999999999874321000 00113888888888887764
No 105
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=87.12 E-value=1.6 Score=47.66 Aligned_cols=61 Identities=25% Similarity=0.418 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
..++++-|+.||++|++|++-+ + +..+ .....++.-|+.++++
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSi-----G--G~~~------------------------------~~~~~~~~~~~~fa~s 101 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISI-----G--GANG------------------------------HVDLNHTAQEDNFVDS 101 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEE-----e--CCCC------------------------------ccccCCHHHHHHHHHH
Confidence 5789999999999999999865 1 1000 0012355778888999
Q ss_pred HHHHHHcCceeEEEEccc
Q 003653 416 LRYWVTEMHVDGFRFDLA 433 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~a 433 (805)
+..+++++|+||+-||--
T Consensus 102 l~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 102 IVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHHHHhCCCeEEEecc
Confidence 999999999999999854
No 106
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=86.77 E-value=1.5 Score=43.24 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=47.0
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
....+.+.++|++|+++|.|+=.-- ...-+.|..+. .+.+- ....+-+..+.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~~------------------~~~~~yps~~~--~~~~~--------~~~~d~l~~~L 71 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTGY------------------GGFAFYPSKLS--PGGFY--------MPPVDLLEMIL 71 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeec------------------CCcccCCcccc--Ccccc--------CCcccHHHHHH
Confidence 5566789999999999999881110 00112333331 11222 12367899999
Q ss_pred HHHHHcCCEEEEEEeccc
Q 003653 344 REAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 344 ~~aH~~Gi~VilDvV~NH 361 (805)
++|.+.||+|++-+-++.
T Consensus 72 ~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 72 DAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHcCCEEEEeCCCCc
Confidence 999999999999888775
No 107
>PLN03244 alpha-amylase; Provisional
Probab=86.74 E-value=0.75 Score=55.17 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=46.9
Q ss_pred CCCCCCCeEEeCC-eEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecc-cccCCCCCEEEEEEcCC
Q 003653 93 GYPTPFGATLRDG-GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALD-SFANKTGDVWHVFLKGD 158 (805)
Q Consensus 93 g~~~plGa~~~~~-~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~-~~~~~~~gvW~~~v~~~ 158 (805)
.....||.+...+ ++.|+-|||.|.-++|+ ||||+|.++....-. .+...+-|+|++.++..
T Consensus 118 ~~~e~~g~~r~~~~~~~~~ewapga~~~~~~----gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~ 181 (872)
T PLN03244 118 SGFEILGMHRHMEHRVDFMDWAPGARYCAII----GDFNGWSPTENAAREGHFGHDDYGYWFIILEDK 181 (872)
T ss_pred hhhhhhccccCcccCceeEeecCCcceeeee----ccccCCCccccccccccccccccceEEEEechh
Confidence 3445799999875 89999999999999999 999999876433210 02344669999999763
No 108
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=86.62 E-value=1.2 Score=49.80 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHH
Q 003653 340 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 419 (805)
Q Consensus 340 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W 419 (805)
++|+..||++|++|++..-+.. . ...++..|+.+++++..+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~-------------------------------------~--~l~~~~~R~~fi~siv~~ 107 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPL-------------------------------------E--QISNPTYRTQWIQQKVEL 107 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCH-------------------------------------H--HcCCHHHHHHHHHHHHHH
Confidence 4788899999999997410000 0 134678899999999999
Q ss_pred HHcCceeEEEEcc
Q 003653 420 VTEMHVDGFRFDL 432 (805)
Q Consensus 420 ~~e~gvDGfR~D~ 432 (805)
++++|.||+-||-
T Consensus 108 ~~~~gfDGIdIDw 120 (358)
T cd02875 108 AKSQFMDGINIDI 120 (358)
T ss_pred HHHhCCCeEEEcc
Confidence 9999999999984
No 109
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.51 E-value=2.6 Score=46.36 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.+|+|++|+-|.++||+||-.+- +.|+..--...|.+... . . ...+....||..+|++.+++.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~-----------~--~--~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLK-----------N--P--FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCC-----------C--c--ccCCCcccccCCCHHHHHHHH
Confidence 589999999999999999999886 78874311111111100 0 0 112233578999999999999
Q ss_pred HHHHHHHHcCc
Q 003653 414 DCLRYWVTEMH 424 (805)
Q Consensus 414 d~l~~W~~e~g 424 (805)
+.+...++-|.
T Consensus 145 ~l~~E~~~~f~ 155 (326)
T cd06564 145 ALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHhcC
Confidence 99999986554
No 110
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=86.34 E-value=1.6 Score=48.03 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHH
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 418 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~ 418 (805)
.++||+++|++|++||+-+.+- ...+.. +.+.+.-.|+.||++|++..+..+.
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~-i~~g~~--------------------------~~~~~~~pDftnp~ar~wW~~~~~~ 118 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPV-ISYGGG--------------------------LGSPGLYPDLGRPDVREWWGNQYKY 118 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCc-eecCcc--------------------------CCCCceeeCCCCHHHHHHHHHHHHH
Confidence 5889999999999998876532 110000 0011224578899999998888888
Q ss_pred HHHcCceeEEEEccc
Q 003653 419 WVTEMHVDGFRFDLA 433 (805)
Q Consensus 419 W~~e~gvDGfR~D~a 433 (805)
+. +.|||||=+|..
T Consensus 119 l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 119 LF-DIGLEFVWQDMT 132 (332)
T ss_pred HH-hCCCceeecCCC
Confidence 77 789999999865
No 111
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.31 E-value=3.4 Score=44.91 Aligned_cols=115 Identities=20% Similarity=0.132 Sum_probs=70.8
Q ss_pred hhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003653 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (805)
Q Consensus 263 ~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~l 342 (805)
..-+.+.|+.|+.+|+|.++|=---.++ +-|+--.. .-.+.| +.+|++++
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~-----------------~~~~p~~~--~~~~~y-----------T~~ei~ei 65 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFP-----------------YEGEPEVG--RMRGAY-----------TKEEIREI 65 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccee-----------------cCCCcccc--cCCCCc-----------CHHHHHHH
Confidence 4556667899999999999974211110 01110000 002223 48999999
Q ss_pred HHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHH
Q 003653 343 VREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 421 (805)
Q Consensus 343 V~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~ 421 (805)
++-|.++||+||-.+- +.|+..-- .. ..|-...+ .......||..+|++.++|.+.+...++
T Consensus 66 ~~yA~~~gI~vIPeid~pGH~~~~l------~~-----~~~~~l~~------~~~~~~~l~~~~~~t~~fi~~li~ev~~ 128 (301)
T cd06565 66 DDYAAELGIEVIPLIQTLGHLEFIL------KH-----PEFRHLRE------VDDPPQTLCPGEPKTYDFIEEMIRQVLE 128 (301)
T ss_pred HHHHHHcCCEEEecCCCHHHHHHHH------hC-----cccccccc------cCCCCCccCCCChhHHHHHHHHHHHHHH
Confidence 9999999999998875 78874210 00 01100000 0111357899999999999999999996
Q ss_pred cCc
Q 003653 422 EMH 424 (805)
Q Consensus 422 e~g 424 (805)
-+.
T Consensus 129 ~f~ 131 (301)
T cd06565 129 LHP 131 (301)
T ss_pred hCC
Confidence 544
No 112
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=85.55 E-value=0.86 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecc
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFN 360 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~N 360 (805)
++++++.+.|+++||++|.|+-+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 457888889999999999999864
No 113
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=84.89 E-value=2.5 Score=46.38 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=38.5
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
.+.++.||+.|+|+|=|=--.+ |.+ + +....+...+|.++|
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~------------------------P~~-----~----------g~~~~~~~~~~akra 67 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN------------------------PYD-----G----------GYNDLEDVIALAKRA 67 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-------------------------TT-----T----------TTTSHHHHHHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccC------------------------Ccc-----c----------ccCCHHHHHHHHHHH
Confidence 3457999999999998765322 111 1 122489999999999
Q ss_pred HHcCCEEEEEEeccccc
Q 003653 347 HKRGIEVVMDVVFNHTV 363 (805)
Q Consensus 347 H~~Gi~VilDvV~NH~~ 363 (805)
+++||+|+||+=|..+-
T Consensus 68 k~~Gm~vlldfHYSD~W 84 (332)
T PF07745_consen 68 KAAGMKVLLDFHYSDFW 84 (332)
T ss_dssp HHTT-EEEEEE-SSSS-
T ss_pred HHCCCeEEEeecccCCC
Confidence 99999999999887763
No 114
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=84.62 E-value=3.8 Score=49.34 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCc---cc-cCCCccccCCCCHHHHHHHHH
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF---YN-YSGCGNTFNCNHPVVRQFIVD 414 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~---~~-~~g~~~~ln~~~~~vr~~i~d 414 (805)
|+++|+.+|++|+++|+=+-++--.... +..|+.......+..+..|.- .+ |.+.-.-.|+.+|.+.....+
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~~~~----y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~ 428 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFISTNSS----YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD 428 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCccccCcc----chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHH
Confidence 9999999999999987755432111111 111221122223333333332 11 112112368899999999999
Q ss_pred HHHHHHHcCceeEEEEcccc
Q 003653 415 CLRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 415 ~l~~W~~e~gvDGfR~D~a~ 434 (805)
.+...-++.++|||=+|+-.
T Consensus 429 ~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 429 ELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HHHhhcccCCccceEEECCC
Confidence 99888889999999999743
No 115
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=83.82 E-value=6.5 Score=43.34 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.+|+++||+-|.++||+||-.+- +.|+..--...|.+.-.+.... . +.........||..+|++.+++.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~-~--------~~~~~~~~~~l~~~~~~t~~fl~ 143 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKP-L--------YTGIEVGFSSLDVDKPTTYEFVD 143 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCc-c--------ccccCCCCcccCCCCHHHHHHHH
Confidence 589999999999999999999987 7887531111111111110000 0 00111112478999999999999
Q ss_pred HHHHHHHH
Q 003653 414 DCLRYWVT 421 (805)
Q Consensus 414 d~l~~W~~ 421 (805)
+.+...++
T Consensus 144 ~v~~E~~~ 151 (329)
T cd06568 144 DVFRELAA 151 (329)
T ss_pred HHHHHHHH
Confidence 99998884
No 116
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=83.71 E-value=29 Score=40.39 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccc
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFNHT 362 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~NH~ 362 (805)
+.++++=.-|+++||.+|.|+-+.=.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va 235 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVA 235 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceec
Confidence 34555556677899999999986543
No 117
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=83.35 E-value=4.2 Score=45.61 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
..+.+.|.-+|++|||+|-|..+.-.. ..|. ++.| .-..|..+|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~--------------------lEP~-----eG~y-----------dF~~lD~~l 53 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSW--------------------LEPE-----EGQY-----------DFSWLDRVL 53 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHH--------------------H-SB-----TTB--------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhh--------------------ccCC-----CCee-----------ecHHHHHHH
Confidence 445667899999999999987653210 0000 0111 146699999
Q ss_pred HHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHc-
Q 003653 344 REAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTE- 422 (805)
Q Consensus 344 ~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e- 422 (805)
+.|+++||+|||-+.. +.. |..-.+ .++..-..+.+|.... .|....++..+|.+|+++...++..++.
T Consensus 54 ~~a~~~Gi~viL~~~~-~~~------P~Wl~~--~~Pe~~~~~~~g~~~~-~g~~~~~~~~~p~yr~~~~~~~~~l~~~y 123 (374)
T PF02449_consen 54 DLAAKHGIKVILGTPT-AAP------PAWLYD--KYPEILPVDADGRRRG-FGSRQHYCPNSPAYREYARRFIRALAERY 123 (374)
T ss_dssp HHHHCTT-EEEEEECT-TTS-------HHHHC--CSGCCC-B-TTTSBEE-CCCSTT-HCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEecc-ccc------ccchhh--hcccccccCCCCCcCc-cCCccccchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999997762 211 111000 0111111222333221 2222456778899988877766555543
Q ss_pred ---CceeEEEEcc
Q 003653 423 ---MHVDGFRFDL 432 (805)
Q Consensus 423 ---~gvDGfR~D~ 432 (805)
-.|-|+-+|.
T Consensus 124 ~~~p~vi~~~i~N 136 (374)
T PF02449_consen 124 GDHPAVIGWQIDN 136 (374)
T ss_dssp TTTTTEEEEEECC
T ss_pred cccceEEEEEecc
Confidence 4577888764
No 118
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=83.18 E-value=3 Score=44.10 Aligned_cols=63 Identities=22% Similarity=0.454 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
..++..++++||++|++|++=|- ++... .+ . . -..++..|+.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~----------------~~------------~----~-~~~~~~~r~~fi~~ 90 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP----------------EF------------T----A-ALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC----------------cc------------h----h-hhcCHHHHHHHHHH
Confidence 46788999999999999998542 21100 00 0 0 23467889999999
Q ss_pred HHHHHHcCceeEEEEcc
Q 003653 416 LRYWVTEMHVDGFRFDL 432 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~ 432 (805)
+..+++++|+||+-||.
T Consensus 91 lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 91 IINYVVSYNLDGIDVDL 107 (253)
T ss_pred HHHHHHHhCCCceeEEe
Confidence 99999999999999984
No 119
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=82.85 E-value=3.8 Score=44.57 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 413 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~ 413 (805)
+.+|++++|+-|.++||+||-.+- +.|+..--...|.+.-.... + ..+......||..+|++.+++.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~----------~--~~~~~~~~~l~~~~~~t~~fl~ 137 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYA----------G--LKLRDVFDPLDPTLPKGYDFLD 137 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCHHhccCccc----------c--CCCCCCCCccCCCCccHHHHHH
Confidence 489999999999999999999986 78885311111111000000 0 0011122478999999999999
Q ss_pred HHHHHHHHcC
Q 003653 414 DCLRYWVTEM 423 (805)
Q Consensus 414 d~l~~W~~e~ 423 (805)
+.+..+++-|
T Consensus 138 ~l~~e~~~lf 147 (303)
T cd02742 138 DLFGEIAELF 147 (303)
T ss_pred HHHHHHHHhC
Confidence 9999999533
No 120
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.28 E-value=0.95 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
.++|++|++.||+.||+||+||-+.-
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 79999999999999999999997553
No 121
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=81.47 E-value=4.9 Score=48.38 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=56.2
Q ss_pred CCCCCCCeEEeCCeEEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCc-------eee
Q 003653 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-------LYG 165 (805)
Q Consensus 93 g~~~plGa~~~~~~~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~-------~Y~ 165 (805)
.++..+|+ .|++|+|.|+.+++.+|+..+.........+.+.+ -.-|.|...+.++.... .|.
T Consensus 62 ~~~~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k---~l~dpya~~l~g~~~~~~~~~~~y~~~ 131 (697)
T COG1523 62 PYDGELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNK---LLLDPYAKALDGDLKWGTPALFGYYYG 131 (697)
T ss_pred ccCCcccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeecccc---ccccceeEEeccccccCcccccccccc
Confidence 34445666 99999999999999999865422223334555543 24589999998865433 334
Q ss_pred EEEcCccCCCCCccccCcccccCcccceeeecc
Q 003653 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRA 198 (805)
Q Consensus 166 y~i~~~~~~~~g~~~~~~~~~~DPya~~~~~~~ 198 (805)
|.+... + +.....|||+|+++.+.
T Consensus 132 ~~~~~~-----~----~~~~~~~~~~Ksvv~~~ 155 (697)
T COG1523 132 YQITNL-----S----PDRDSADPYPKSVVIDP 155 (697)
T ss_pred cccccc-----C----ccccccccCCceEEecc
Confidence 444321 0 11346799999998775
No 122
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=80.89 E-value=25 Score=45.48 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCChHHHHHHhcCCCCCCce
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 483 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d~~~~~~~ 483 (805)
.+|.++++|.+..+.-.+ -++|||+|.++--+.. ...-++++.++ +.|+.+
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlh-------------------------VaeylLd~AR~--vnPnLy 537 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIH-------------------------VAEYLLDAARK--YNPNLY 537 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHH-------------------------HHHHHHHHHhh--cCCCeE
Confidence 579999999999888876 6799999988655421 00124454443 778999
Q ss_pred eeeeecCCC
Q 003653 484 LIAEAWDTG 492 (805)
Q Consensus 484 ligE~w~~~ 492 (805)
++||-+..+
T Consensus 538 V~AELFTGS 546 (1464)
T TIGR01531 538 VVAELFTGS 546 (1464)
T ss_pred EEeeecCCc
Confidence 999987544
No 123
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=79.94 E-value=2.6 Score=44.87 Aligned_cols=52 Identities=21% Similarity=0.405 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHH
Q 003653 338 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 417 (805)
Q Consensus 338 e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~ 417 (805)
+.++||+.+|++|++|++-+.+. +|+...+.++
T Consensus 67 dp~~~i~~l~~~g~~~~~~~~P~-----------------------------------------------v~~w~~~~~~ 99 (265)
T cd06589 67 NPKSMIDELHDNGVKLVLWIDPY-----------------------------------------------IREWWAEVVK 99 (265)
T ss_pred CHHHHHHHHHHCCCEEEEEeChh-----------------------------------------------HHHHHHHHHH
Confidence 37899999999999999965321 2566666666
Q ss_pred HHHHcCceeEEEEcccccc
Q 003653 418 YWVTEMHVDGFRFDLASIM 436 (805)
Q Consensus 418 ~W~~e~gvDGfR~D~a~~l 436 (805)
..+.++|||||=+|...-.
T Consensus 100 ~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 100 KLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred HhhccCCCCEEeccCCCCC
Confidence 6656899999999976443
No 124
>PRK12568 glycogen branching enzyme; Provisional
Probab=77.70 E-value=4.7 Score=48.87 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=50.0
Q ss_pred CCCeEEeCCe-EEEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCCCCceeeEEEcCccCCC
Q 003653 97 PFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (805)
Q Consensus 97 plGa~~~~~~-~~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~~g~~Y~y~i~~~~~~~ 175 (805)
-||.|..++| +.+|+|-|.|.+|+|+. .. + ....+|.+. ...|+|...+|.. ..|++++.-.
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~-~~-~------~~~~~~~~~--~~~g~f~~~~~~~---~~y~~~~~~~---- 91 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLID-GR-G------KLLARMQAS--PIDGVFEGILPAD---GPYRLRIVWP---- 91 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEe-cC-C------ccccccEec--CCCCeEEEecCCC---CCEEEEEEeC----
Confidence 4889988888 79999999999999962 11 1 111256432 3458999988843 2487777521
Q ss_pred CCccccCcccccCccccee
Q 003653 176 EGHYFDPTKIVLDPYAKAV 194 (805)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~ 194 (805)
.+ ...+.|||+...
T Consensus 92 ~~-----~~~~~dpy~~~~ 105 (730)
T PRK12568 92 DV-----VQEIEDPYAFAP 105 (730)
T ss_pred Cc-----eEEeeccccccc
Confidence 11 235679999754
No 125
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=74.39 E-value=11 Score=34.75 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=44.3
Q ss_pred EeCCeEEEEEEcC--CCCeEEEEEEeCCCccCCceeeeeeccccc-CCCCCEEEEEEcCCCCCceeeEEEcC
Q 003653 102 LRDGGVNFSIFSS--NAVSATLCLITLSDLQENKVTEEIALDSFA-NKTGDVWHVFLKGDFKDMLYGYKFDG 170 (805)
Q Consensus 102 ~~~~~~~F~vwap--~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~-~~~~gvW~~~v~~~~~g~~Y~y~i~~ 170 (805)
..++.+++||++. ++.+|.|+--++.+.........++|.+.. ...-++|+++|+.......|.|+|.+
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 3567889999985 678888765444332112234567786642 23348999999876666889999863
No 126
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=74.25 E-value=34 Score=36.62 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=67.9
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH-HH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV-RE 345 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV-~~ 345 (805)
-..|+.|+++|+|+|+|.+..+..+ +.. .+ .=|| |+.+.-- +.+-|-+.+ +.
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~g-----------dg~-----~~-~~YF-pnr~lpv---------raDlf~rvawql 72 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDG-----------DGN-----AD-AVYF-PNRHLPV---------RADLFNRVAWQL 72 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCC-----------CCc-----ee-eEEc-CCCCCch---------HHHHHHHHHHHH
Confidence 3346999999999999999876432 111 11 1222 3232221 234455555 34
Q ss_pred HHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHHcCce
Q 003653 346 AHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 425 (805)
Q Consensus 346 aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gv 425 (805)
..+.|++|+.-+-.=- |.-.+...+-.... +. .+ ......|..-+|++|+.|.+...-....-.+
T Consensus 73 ~tr~~v~VyAWMPvla------------f~lp~~~~~~~~~~-~~-~~-~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~f 137 (294)
T PF14883_consen 73 RTRAGVKVYAWMPVLA------------FDLPKVKRADEVRT-DR-PD-PDGYRRLSPFDPEARQIIKEIYEDLARYSKF 137 (294)
T ss_pred hhhhCCEEEEeeehhh------------ccCCCcchhhhccc-cC-CC-CCCceecCCCCHHHHHHHHHHHHHHHhhCCC
Confidence 4489999988765311 11000000000000 00 00 0011345556899999999999999865699
Q ss_pred eEEEE
Q 003653 426 DGFRF 430 (805)
Q Consensus 426 DGfR~ 430 (805)
||+-|
T Consensus 138 dGILF 142 (294)
T PF14883_consen 138 DGILF 142 (294)
T ss_pred CeEEE
Confidence 99999
No 127
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=72.93 E-value=18 Score=39.45 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCCC-ccccCCCCHHHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGC-GNTFNCNHPVVRQFI 412 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~-~~~ln~~~~~vr~~i 412 (805)
+.+|++++|+-|.++||+||-.+- +.|+..--...|.+.... .........+. .+.||..+|++.+++
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~ypel~~~~----------~~~~~~~~~~~~~~~l~~~~p~t~~f~ 135 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVAYPELASGP----------GPYVIERGWGVFEPLLDPTNEETYTFL 135 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHhCHHhccCC----------CccccccccccCCCccCCCChhHHHHH
Confidence 489999999999999999999986 788853110011110000 00001111111 246899999999999
Q ss_pred HHHHHHHHHcC
Q 003653 413 VDCLRYWVTEM 423 (805)
Q Consensus 413 ~d~l~~W~~e~ 423 (805)
.+.+.-++.-|
T Consensus 136 ~~l~~E~~~lF 146 (311)
T cd06570 136 DNLFGEMAELF 146 (311)
T ss_pred HHHHHHHHHhC
Confidence 99999998534
No 128
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=72.82 E-value=3.3 Score=45.40 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=36.5
Q ss_pred hhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003653 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~ 344 (805)
-..+.|..+|++|+|+|..-=.+..-+ +.. ...|| ....+|..|++
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he-------~~~----------g~~df-----------------~g~~dl~~f~~ 70 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHE-------PEE----------GQFDF-----------------TGNRDLDRFLD 70 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHS-------SBT----------TB--------------------SGGG-HHHHHH
T ss_pred HHHHHHHHHHhCCcceEEEeccccccC-------CCC----------Ccccc-----------------cchhhHHHHHH
Confidence 345678999999999999753333211 000 01121 12688999999
Q ss_pred HHHHcCCEEEEEEe
Q 003653 345 EAHKRGIEVVMDVV 358 (805)
Q Consensus 345 ~aH~~Gi~VilDvV 358 (805)
.|+++||.|||-.=
T Consensus 71 ~a~~~gl~vilrpG 84 (319)
T PF01301_consen 71 LAQENGLYVILRPG 84 (319)
T ss_dssp HHHHTT-EEEEEEE
T ss_pred HHHHcCcEEEeccc
Confidence 99999999998754
No 129
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=70.56 E-value=2.8 Score=46.46 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCCCCCccccCCCCCccceeeCCCCCccccCC---CccccCCCCHHHHH
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG---CGNTFNCNHPVVRQ 410 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g---~~~~ln~~~~~vr~ 410 (805)
+.+|+++||+-|+++||+||-.|- +.|+..--...|.+... . ...+........ ....||..+|.+.+
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~~~~t~~ 142 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKAYPELGCS-----A---WPEDKSWPNSTCWYPDNGVLDPSNPETYE 142 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHHHHCCC-----H---TTCSSSCEEEETTSEEEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHhCchhhcc-----c---cccccccccccccCCCcccCCCCcHHHHH
Confidence 589999999999999999999996 78885311000000000 0 000001111111 11368999999999
Q ss_pred HHHHHHHHHHHcCc
Q 003653 411 FIVDCLRYWVTEMH 424 (805)
Q Consensus 411 ~i~d~l~~W~~e~g 424 (805)
++.+.+...+.-+.
T Consensus 143 ~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 143 FLKDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999996555
No 130
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=70.56 E-value=20 Score=39.80 Aligned_cols=119 Identities=17% Similarity=0.119 Sum_probs=62.3
Q ss_pred hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHc
Q 003653 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKR 349 (805)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~ 349 (805)
++-+|++|...|-|.--+.- . ..-|-=...+|...+..++ .+=+++|+++|+++
T Consensus 97 ~~~ak~aGakY~VlTakHHD-G--------------F~LW~S~~t~~~v~~~~~k-----------rDiv~El~~A~rk~ 150 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHD-G--------------FCLWPSKYTDYNVVNSGPK-----------RDIVGELADACRKY 150 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT-----------------BSS--TT-SSBGGGGGGT-----------S-HHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEeehhhcC-c--------------cccCCCCCCcccccCCCCC-----------CCHHHHHHHHHHHc
Confidence 57789999999998876541 1 0112222233444432222 47799999999999
Q ss_pred CCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCC-CHHHHHHHHHHHHHHHHcCceeEE
Q 003653 350 GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCN-HPVVRQFIVDCLRYWVTEMHVDGF 428 (805)
Q Consensus 350 Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~-~~~vr~~i~d~l~~W~~e~gvDGf 428 (805)
||++.+ -+.+. .-+. +... .. ......+ .....-. ...+.+++...++-.++.|.+|.+
T Consensus 151 Glk~G~--Y~S~~-dw~~--~~~~-----------~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~l 210 (346)
T PF01120_consen 151 GLKFGL--YYSPW-DWHH--PDYP-----------PD---EEGDENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDIL 210 (346)
T ss_dssp T-EEEE--EEESS-SCCC--TTTT-----------SS---CHCHHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEE
T ss_pred CCeEEE--Eecch-HhcC--cccC-----------CC---ccCCccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceE
Confidence 999998 22222 1110 0000 00 0000000 0000000 112455888899999999999999
Q ss_pred EEcccc
Q 003653 429 RFDLAS 434 (805)
Q Consensus 429 R~D~a~ 434 (805)
=||...
T Consensus 211 WfDg~~ 216 (346)
T PF01120_consen 211 WFDGGW 216 (346)
T ss_dssp EEESTT
T ss_pred EecCCC
Confidence 999764
No 131
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=69.99 E-value=17 Score=38.83 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=39.6
Q ss_pred CcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCC-ccccccCCCCCCCCCCCCCCCCCcHHH
Q 003653 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY-STINYFSPMISYSSAGIRNCGHDAINE 338 (805)
Q Consensus 260 ~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY-~~~~y~~~~~~ygt~~~~~~~~~~~~e 338 (805)
+-++....+-+|+-+++|+..|.+ +.. + ..|++ ...|+..+.+ ..+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv----D~G----W-----------~~~~~~~~~d~~~~~~--------------~~d 74 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV----DAG----W-----------YGWEKDDDFDFTKPIP--------------DFD 74 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE----BTT----C-----------CGS--TTT--TT-B-T--------------T--
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe----ccc----c-----------ccccccccccccccCC--------------ccC
Confidence 457788888899999999999998 210 0 00111 2233333322 578
Q ss_pred HHHHHHHHHHcCCEEEEEE
Q 003653 339 FKLLVREAHKRGIEVVMDV 357 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDv 357 (805)
+++||+-|+++|++|+|=+
T Consensus 75 l~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 75 LPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999843
No 132
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=68.96 E-value=8.2 Score=41.72 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCC---cc--ccccCCCCCCCCCCCCCCCCCcHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGY---ST--INYFSPMISYSSAGIRNCGHDAINE 338 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY---~~--~~y~~~~~~ygt~~~~~~~~~~~~e 338 (805)
..+..-|+.+|+-|||.|+++=+.+....... ..+...++ ++ .||..+++.| -+-
T Consensus 30 ~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~--------n~~~~~~~~~~~~~~~d~~~~N~~Y------------F~~ 89 (289)
T PF13204_consen 30 EEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP--------NRYGFAPFPDEDPGQFDFTRPNPAY------------FDH 89 (289)
T ss_dssp HHHHHHHHHHHHTT--EEEEES-SSSS-B------------TTS-BS-SSTT------TT----H------------HHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCccccccc--------ccCCCcCCCCCCccccCCCCCCHHH------------HHH
Confidence 33444588899999999999877664331100 00011111 11 4677787777 688
Q ss_pred HHHHHHHHHHcCCEEEEEEeccc
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
+.++|+.|.++||.+- +|+=|
T Consensus 90 ~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 90 LDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp HHHHHHHHHHTT-EEE--EESS-
T ss_pred HHHHHHHHHHCCCeEE--EEEEE
Confidence 9999999999999985 56555
No 133
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.58 E-value=9 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 003653 336 INEFKLLVREAHKRGIEVVMDV 357 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDv 357 (805)
.++..++|+.+|++|++|+-.+
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHHHHhCCCeEeccc
Confidence 7899999999999999999654
No 134
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=67.57 E-value=13 Score=42.66 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccCCCC----CCCccccCCCCC--ccceeeCCC--CCccccCCC-ccccCCC
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGND----KGPILSFRGVDN--SVYYMLAPK--GEFYNYSGC-GNTFNCN 404 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~~~~----~~~~~~~~~~~~--~~yy~~~~~--g~~~~~~g~-~~~ln~~ 404 (805)
+.+|++++|+-|+++||+||-.|- +.|+..--. ..|.+.-.|... ..|...++. ..+....+. .+.||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 689999999999999999999986 789753100 001111011000 011111110 111111111 2468999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003653 405 HPVVRQFIVDCLRYWVT 421 (805)
Q Consensus 405 ~~~vr~~i~d~l~~W~~ 421 (805)
+|.+.+++.+++...++
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999998884
No 135
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=65.79 E-value=9.3 Score=43.46 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=38.9
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccC-CCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS-PMISYSSAGIRNCGHDAINEFKLLVRE 345 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~-~~~~ygt~~~~~~~~~~~~e~k~lV~~ 345 (805)
.+-+.++|+.|+|+|-|.=.+. ...... ++|.+-- .....=+.+.|+.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~------------------------~~~~~~~~~p~~~~-------~~~~~~ld~~I~~ 124 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYW------------------------ALQATDGDNPYLIG-------LTQLKILDEAINW 124 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchh------------------------hhhccCCCCCCeec-------chHHHHHHHHHHH
Confidence 4457999999999999753323 110000 2232221 1123367788999
Q ss_pred HHHcCCEEEEEEe
Q 003653 346 AHKRGIEVVMDVV 358 (805)
Q Consensus 346 aH~~Gi~VilDvV 358 (805)
|.++||+|++|+.
T Consensus 125 a~~~gi~V~iD~H 137 (407)
T COG2730 125 AKKLGIYVLIDLH 137 (407)
T ss_pred HHhcCeeEEEEec
Confidence 9999999999973
No 136
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.65 E-value=14 Score=39.29 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=39.4
Q ss_pred chhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 003653 269 KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHK 348 (805)
Q Consensus 269 ~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~ 348 (805)
.|+-||+.|||.|-|-=..+ + |+. =...||. +.+..+-.-++-++|..
T Consensus 68 ~~~iLK~~GvNyvRlRvwnd-P--------------------~ds-----ngn~ygg------GnnD~~k~ieiakRAk~ 115 (403)
T COG3867 68 ALQILKNHGVNYVRLRVWND-P--------------------YDS-----NGNGYGG------GNNDLKKAIEIAKRAKN 115 (403)
T ss_pred HHHHHHHcCcCeEEEEEecC-C--------------------ccC-----CCCccCC------CcchHHHHHHHHHHHHh
Confidence 47999999999988753222 1 110 0123342 22235556667788899
Q ss_pred cCCEEEEEEecccc
Q 003653 349 RGIEVVMDVVFNHT 362 (805)
Q Consensus 349 ~Gi~VilDvV~NH~ 362 (805)
+||+|++|+-|.-.
T Consensus 116 ~GmKVl~dFHYSDf 129 (403)
T COG3867 116 LGMKVLLDFHYSDF 129 (403)
T ss_pred cCcEEEeeccchhh
Confidence 99999999976543
No 137
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=63.91 E-value=11 Score=39.48 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=38.4
Q ss_pred CcChhhhc-------cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCC
Q 003653 260 PGTYLGVV-------EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCG 332 (805)
Q Consensus 260 ~G~~~g~~-------~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~ 332 (805)
+||+-.+. +-|+++|+|||++|+++==+ -..
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGt------------------------i~l------------------ 110 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGT------------------------IDL------------------ 110 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SS------------------------S--------------------
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCc------------------------eeC------------------
Confidence 67776653 23688999999999986311 111
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEEEe
Q 003653 333 HDAINEFKLLVREAHKRGIEVVMDVV 358 (805)
Q Consensus 333 ~~~~~e~k~lV~~aH~~Gi~VilDvV 358 (805)
+.++..++|+.+.++|++|+-.|=
T Consensus 111 --~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 111 --PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred --CHHHHHHHHHHHHHCCCEEeeccc
Confidence 278899999999999999998764
No 138
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=61.04 E-value=24 Score=35.60 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEccc
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 433 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a 433 (805)
.++..|+.+++++..+++++++||+-+|.-
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E 113 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWE 113 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeee
Confidence 456778888888999999999999999854
No 139
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=60.45 E-value=12 Score=40.80 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHH
Q 003653 339 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 418 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~ 418 (805)
..++++.||++|++|++=|- +... +. . + +..+ .--..++..|+.+++++..
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~~-~---------~-~~~~----------------~~~l~~~~~r~~fi~~iv~ 97 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-GN-F---------D-SELA----------------HAVLSNPEARQRLINNILA 97 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-CC-C---------C-HHHH----------------HHHhcCHHHHHHHHHHHHH
Confidence 35799999999999997553 2211 00 0 0 0000 0112467889999999999
Q ss_pred HHHcCceeEEEEccc
Q 003653 419 WVTEMHVDGFRFDLA 433 (805)
Q Consensus 419 W~~e~gvDGfR~D~a 433 (805)
+++++|.||+-||--
T Consensus 98 ~l~~~~~DGidiDwE 112 (313)
T cd02874 98 LAKKYGYDGVNIDFE 112 (313)
T ss_pred HHHHhCCCcEEEecc
Confidence 999999999999853
No 140
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=59.55 E-value=10 Score=41.06 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=14.0
Q ss_pred ccchhHHHHcCCceEEECcc
Q 003653 267 VEKLDHLKDLGINCLELMPC 286 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi 286 (805)
...+++||+||+|+|-+--|
T Consensus 56 ~rDi~~l~~LgiNtIRVY~v 75 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVYSV 75 (314)
T ss_dssp HHHHHHHHHHT-SEEEES--
T ss_pred HHhHHHHHHcCCCEEEEEEe
Confidence 34589999999999986543
No 141
>PLN02808 alpha-galactosidase
Probab=59.06 E-value=61 Score=36.46 Aligned_cols=72 Identities=14% Similarity=-0.009 Sum_probs=46.3
Q ss_pred CcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCC----CCC---CceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCC
Q 003653 711 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK----RPG---YRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLD 783 (805)
Q Consensus 711 ~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~----~~g---~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (805)
..+-+|.+.-.++..+++++|.+++++++.++. ..+ .+.++|...... . ...+
T Consensus 308 ~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~----------g----------~~~~ 367 (386)
T PLN02808 308 GDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQ----------S----------SVKG 367 (386)
T ss_pred CCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCcc----------C----------cccc
Confidence 467778887666678999999999888777553 111 123344422110 0 0123
Q ss_pred ceeEEeeCCeEEEEEeCCC
Q 003653 784 ANLYPMLSYSSIILLLSPD 802 (805)
Q Consensus 784 ~~~~~v~~~s~~vl~~~~~ 802 (805)
..+++|+|..++||.++++
T Consensus 368 ~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 368 QLSALVESHACKMYVLTPR 386 (386)
T ss_pred eEEEEECCceEEEEEEeCC
Confidence 4678999999999998764
No 142
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=57.76 E-value=62 Score=36.47 Aligned_cols=113 Identities=21% Similarity=0.201 Sum_probs=67.4
Q ss_pred hhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHc
Q 003653 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKR 349 (805)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~ 349 (805)
++-+|+.|...|-|.--+.- . ...|-=...+|.+.+..+. .+-+++|+++|+++
T Consensus 87 a~~~k~AGakY~vlTaKHHD-G--------------F~lw~S~~t~~n~~~~~pk-----------rDiv~el~~A~rk~ 140 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHD-G--------------FCLWDSKYSNWNAVDTGPK-----------RDLVGELADAVRKR 140 (384)
T ss_pred HHHHHHcCCCeEEeeeeecC-C--------------ccccCCCCCCCcccCCCCC-----------cchHHHHHHHHHHc
Confidence 67889999999998765431 0 1112222335555543322 47799999999999
Q ss_pred CCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHH---HHHHHHHHHcCcee
Q 003653 350 GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI---VDCLRYWVTEMHVD 426 (805)
Q Consensus 350 Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i---~d~l~~W~~e~gvD 426 (805)
||++-+= |...+ | .++.|-.. ... .......+...+|+ ..-++-.+..||-|
T Consensus 141 Glk~G~Y----~S~~D--W---------~~p~y~~~------~~~----~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd 195 (384)
T smart00812 141 GLKFGLY----HSLFD--W---------FNPLYAGP------TSS----DEDPDNWPRFQEFVDDWLPQLRELVTRYKPD 195 (384)
T ss_pred CCeEEEE----cCHHH--h---------CCCccccc------ccc----ccccccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999882 21111 1 01111000 000 00112334566777 78888899999999
Q ss_pred EEEEccc
Q 003653 427 GFRFDLA 433 (805)
Q Consensus 427 GfR~D~a 433 (805)
.+=||..
T Consensus 196 ~lWfD~~ 202 (384)
T smart00812 196 LLWFDGG 202 (384)
T ss_pred eEEEeCC
Confidence 9999965
No 143
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=57.33 E-value=30 Score=37.21 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCEEEEE
Q 003653 337 NEFKLLVREAHKRGIEVVMD 356 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilD 356 (805)
.+|.+-|+.|+++|++|+|-
T Consensus 59 ~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999993
No 144
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=56.14 E-value=8.8 Score=44.73 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=38.8
Q ss_pred CCcChh-hhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCC
Q 003653 259 HPGTYL-GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (805)
Q Consensus 259 ~~G~~~-g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~yg 324 (805)
..|||. .+.+-++.+++.|++.|+|+|++..... .--|++.+=|+.++-|=
T Consensus 21 GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~---------------~SPY~~~S~~alnplyI 72 (497)
T PRK14508 21 GIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYG---------------DSPYQSFSAFAGNPLLI 72 (497)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---------------CCCcCcccccccChhhc
Confidence 369995 9999999999999999999999984310 01377777777666554
No 145
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=55.55 E-value=35 Score=36.16 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHcCceeEEEEcc
Q 003653 405 HPVVRQFIVDCLRYWVTEMHVDGFRFDL 432 (805)
Q Consensus 405 ~~~vr~~i~d~l~~W~~e~gvDGfR~D~ 432 (805)
++.-|+.+++.+..+++++++||+-||-
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDw 120 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDV 120 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 4556677778888899999999999984
No 146
>PLN03059 beta-galactosidase; Provisional
Probab=52.94 E-value=17 Score=44.55 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.0
Q ss_pred hhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003653 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~ 344 (805)
-..+.|..+|++|+|+|..==.+..-+ -.+..| .| .+..||.+|++
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HE-------------------p~~G~~-----dF----------~G~~DL~~Fl~ 105 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------------------PSPGNY-----YF----------EDRYDLVKFIK 105 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccC-------------------CCCCee-----ec----------cchHHHHHHHH
Confidence 345678899999999998533222110 011111 11 13789999999
Q ss_pred HHHHcCCEEEEE
Q 003653 345 EAHKRGIEVVMD 356 (805)
Q Consensus 345 ~aH~~Gi~VilD 356 (805)
.|++.||.||+=
T Consensus 106 la~e~GLyvilR 117 (840)
T PLN03059 106 VVQAAGLYVHLR 117 (840)
T ss_pred HHHHcCCEEEec
Confidence 999999999995
No 147
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.96 E-value=61 Score=33.34 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=42.4
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
..+.+-.+.|+++|+..|+|+|.+......+... ..-|.-.+.- ..+.++++++.
T Consensus 145 e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~l----------g~~y~~~~~~---------------~~~~~~l~~~~ 199 (213)
T PRK10076 145 ENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLL----------GKTWSMKEVP---------------APSSADVATMR 199 (213)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCccchhHHHHc----------CCcCccCCCC---------------CcCHHHHHHHH
Confidence 3344445788889999999999988643221100 0012222211 12478999999
Q ss_pred HHHHHcCCEEEE
Q 003653 344 REAHKRGIEVVM 355 (805)
Q Consensus 344 ~~aH~~Gi~Vil 355 (805)
+.+.++|+.|++
T Consensus 200 ~~~~~~gl~~~i 211 (213)
T PRK10076 200 EMAERAGFQVTV 211 (213)
T ss_pred HHHHHcCCeEEe
Confidence 999999999974
No 148
>PRK15452 putative protease; Provisional
Probab=49.05 E-value=75 Score=36.55 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
.++|++.|+.||++|++|.+ .+|.
T Consensus 45 ~edl~eav~~ah~~g~kvyv--t~n~ 68 (443)
T PRK15452 45 HENLALGINEAHALGKKFYV--VVNI 68 (443)
T ss_pred HHHHHHHHHHHHHcCCEEEE--EecC
Confidence 68999999999999999977 4443
No 149
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=48.39 E-value=33 Score=34.63 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=28.6
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
...+..||++|+..|-.+|+-- +..++||+.+.++|
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------------------------------l~~leE~~avAkA~ 173 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------------------------------LKHLEELKAVAKAC 173 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------------------------------TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------------------------------cccHHHHHHHHHHH
Confidence 3457999999999999999732 12378888888888
Q ss_pred HHcCCEE
Q 003653 347 HKRGIEV 353 (805)
Q Consensus 347 H~~Gi~V 353 (805)
-++||.+
T Consensus 174 a~~g~~l 180 (218)
T PF07071_consen 174 ARNGFTL 180 (218)
T ss_dssp HHCT-EE
T ss_pred HHcCcee
Confidence 8888875
No 150
>PRK14705 glycogen branching enzyme; Provisional
Probab=48.02 E-value=40 Score=43.52 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCeEEeCCeE-EEEEEcCCCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC--CCCceeeEEEcCccC
Q 003653 97 PFGATLRDGGV-NFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKFS 173 (805)
Q Consensus 97 plGa~~~~~~~-~F~vwap~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~--~~g~~Y~y~i~~~~~ 173 (805)
-||.|..++|+ .+|+|-|.|.+|+|+.- + ...+|.. ...|+|...++.. .....|++++.-.
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~--~--------~~~~~~~---~~~g~~~~~~~~~~~~~~~~y~~~~~~~-- 586 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA--A--------GRVPMTH---EAHGVWAAVLEPLQAGHVPDYRLEVTYD-- 586 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC--C--------Cceeeee---CCCCEEEEeccccccCCCCCeEEEEEeC--
Confidence 38888888884 79999999999999621 1 1224542 3458999998842 1223488887521
Q ss_pred CCCCccccCcccccCccccee
Q 003653 174 PQEGHYFDPTKIVLDPYAKAV 194 (805)
Q Consensus 174 ~~~g~~~~~~~~~~DPya~~~ 194 (805)
.+. ...+.|||+...
T Consensus 587 --~~~----~~~~~d~y~~~~ 601 (1224)
T PRK14705 587 --GAE----PVTIDDPYHYLP 601 (1224)
T ss_pred --Ccc----ceEeccccccCC
Confidence 111 124679998653
No 151
>TIGR03356 BGL beta-galactosidase.
Probab=47.41 E-value=28 Score=39.81 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=44.9
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
.-|.-..+.|+-||+||++++=+.=-+..-. + -|-. .++ ...++-++
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~--------p--------~g~~-----~~n------------~~~~~~y~ 97 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIF--------P--------EGTG-----PVN------------PKGLDFYD 97 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcc--------c--------CCCC-----CcC------------HHHHHHHH
Confidence 3477778899999999999998754332110 0 0100 011 12378899
Q ss_pred HHHHHHHHcCCEEEEEEe
Q 003653 341 LLVREAHKRGIEVVMDVV 358 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV 358 (805)
++|++|+++||++|+++.
T Consensus 98 ~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 98 RLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHcCCeeEEeec
Confidence 999999999999999986
No 152
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=46.25 E-value=40 Score=36.83 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHcCceeEEEEcccccc
Q 003653 399 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 436 (805)
Q Consensus 399 ~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l 436 (805)
--++..+++.+++|.+.+...+ +.|+|||-+|.+...
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 3578889999999999887776 899999999988655
No 153
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=45.35 E-value=18 Score=42.37 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCcCh-hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCC
Q 003653 259 HPGTY-LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYS 324 (805)
Q Consensus 259 ~~G~~-~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~yg 324 (805)
..|+| ..+.+-++.+++.|+..++|.|++.... .+++-|.+.+=|+.+|-|=
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~--------------~~~sPY~p~S~~alNPlyI 65 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGP--------------GNSSPYSPSSRFALNPLYI 65 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-T--------------TCTTTTSBS-SSS--GGGS
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCC--------------CCCCCCCCCCCCcCChHHc
Confidence 47999 8899999999999999999999988532 1124588888888887764
No 154
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=44.21 E-value=17 Score=40.18 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHH
Q 003653 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~ 420 (805)
..|++||++|++|+-=+.+.... +. .+. ..|=-.++..+..+++.|...+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~-~~--------------~~~---------------~~lL~~~~~~~~~~a~kLv~la 99 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG-QV--------------EWL---------------EDFLKKDEDGSFPVADKLVEVA 99 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-ch--------------HHH---------------HHHhccCcccchHHHHHHHHHH
Confidence 46789999999999866544321 00 000 0000011334456667777778
Q ss_pred HcCceeEEEEccccc
Q 003653 421 TEMHVDGFRFDLASI 435 (805)
Q Consensus 421 ~e~gvDGfR~D~a~~ 435 (805)
+.||+||+-+|.=..
T Consensus 100 k~yGfDGw~iN~E~~ 114 (339)
T cd06547 100 KYYGFDGWLINIETE 114 (339)
T ss_pred HHhCCCceEeeeecc
Confidence 899999999985443
No 155
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=43.67 E-value=87 Score=35.85 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe-cccccC
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV-FNHTVE 364 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV-~NH~~~ 364 (805)
+.+|.+++|+-|.-|||+|+..+- +.|+++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 379999999999999999999986 899865
No 156
>PTZ00445 p36-lilke protein; Provisional
Probab=41.80 E-value=48 Score=33.96 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=39.4
Q ss_pred hhhccch-hHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003653 264 LGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (805)
Q Consensus 264 ~g~~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~l 342 (805)
...++++ +.|++.||.+|-+ +++.. .-+-+ +-||.-.+ +-+..+++. ...+|+.+
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~----D~DnT-------lI~~H---sgG~~~~~--~~~~~~~~~--------~tpefk~~ 83 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIAS----DFDLT-------MITKH---SGGYIDPD--NDDIRVLTS--------VTPDFKIL 83 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEe----cchhh-------hhhhh---cccccCCC--cchhhhhcc--------CCHHHHHH
Confidence 3444444 8899999999974 32210 00000 01333222 122334431 24679999
Q ss_pred HHHHHHcCCEEEE
Q 003653 343 VREAHKRGIEVVM 355 (805)
Q Consensus 343 V~~aH~~Gi~Vil 355 (805)
++++++.||+|++
T Consensus 84 ~~~l~~~~I~v~V 96 (219)
T PTZ00445 84 GKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHCCCeEEE
Confidence 9999999999985
No 157
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.43 E-value=29 Score=31.93 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=15.6
Q ss_pred hhccchhHHHHcCCceEEECc
Q 003653 265 GVVEKLDHLKDLGINCLELMP 285 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~P 285 (805)
.+.+-++.++++|+.+|||.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 345567899999999999987
No 158
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=40.41 E-value=44 Score=37.49 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=44.2
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|+.|+++||+.|.|- +..+.. .-.-.+... .+.++..+.++.++
T Consensus 109 e~l~~l~~~G~~rvslG-vQS~~~----------------------~~L~~l~R~-----------~s~~~~~~a~~~l~ 154 (375)
T PRK05628 109 EFFAALRAAGFTRVSLG-MQSAAP----------------------HVLAVLDRT-----------HTPGRAVAAAREAR 154 (375)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCH----------------------HHHHHcCCC-----------CCHHHHHHHHHHHH
Confidence 57899999999999874 333221 111112111 13788999999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |.+|++++.-+.
T Consensus 155 ~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 155 AAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HcCCCcEEEEEeccCCCC
Confidence 99999 999999987544
No 159
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=39.23 E-value=98 Score=27.26 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=38.9
Q ss_pred CCcEEEEEEEcCCCCEEEEEEeCCC---CcEEEEcCC---CCCCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCC
Q 003653 710 KSRFVAFTLIDSVKGEIYVAFNASH---LPVIISLPK---RPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLD 783 (805)
Q Consensus 710 ~~~vlaf~R~~~~~~~~~Vv~N~~~---~~~~v~Lp~---~~g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (805)
+++.+||+|.....+-+.|+-|.+. ...++.+|. .++..+.+|+....- ..+ ..+
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~-----tv~--------------~~G 65 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSY-----TVD--------------SNG 65 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEE-----E----------------TTS
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEE-----EEC--------------CCC
Confidence 4589999886544234444555544 257788883 246678887754321 111 134
Q ss_pred ceeEEeeCCeEEEEEeCC
Q 003653 784 ANLYPMLSYSSIILLLSP 801 (805)
Q Consensus 784 ~~~~~v~~~s~~vl~~~~ 801 (805)
..++++..+.-.||++..
T Consensus 66 ~l~v~m~~G~P~Vl~P~~ 83 (91)
T PF09260_consen 66 TLTVPMSNGEPRVLYPAS 83 (91)
T ss_dssp -EEEEESTT--EEEEECH
T ss_pred EEEEEEcCCceEEEEEHH
Confidence 577888888888888764
No 160
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.82 E-value=1.9e+02 Score=30.63 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=36.0
Q ss_pred hhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 003653 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVR 344 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~ 344 (805)
.+.+.++.++++|++.|+|.+... .. ...+.++ +..+++++.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~-~~------------------~~~~~~~------------------~~~~~~~l~~ 59 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDES-DE------------------RLARLDW------------------SKEERLSLVK 59 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCc-cc------------------ccccccC------------------CHHHHHHHHH
Confidence 456678999999999999963210 00 0011111 1467888888
Q ss_pred HHHHcCCEEEE
Q 003653 345 EAHKRGIEVVM 355 (805)
Q Consensus 345 ~aH~~Gi~Vil 355 (805)
.+.++||+|..
T Consensus 60 ~l~~~Gl~i~~ 70 (284)
T PRK13210 60 AIYETGVRIPS 70 (284)
T ss_pred HHHHcCCCceE
Confidence 99999999874
No 161
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=36.66 E-value=31 Score=37.24 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEe
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVV 358 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV 358 (805)
+++|++++.+-||++||.|.||.-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 489999999999999999999975
No 162
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.78 E-value=2e+02 Score=30.29 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=35.2
Q ss_pred hccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 003653 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVRE 345 (805)
Q Consensus 266 ~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~ 345 (805)
+.+.++++.++|++.|+|...... .|... ++ +.++++++-+.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~--------------------~~~~~-------~~-----------~~~~~~~l~~~ 53 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPR--------------------SWKGV-------RL-----------SEETAEKFKEA 53 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCC--------------------CCCCC-------CC-----------CHHHHHHHHHH
Confidence 556789999999999999654321 01111 11 25677778888
Q ss_pred HHHcCCEEEE
Q 003653 346 AHKRGIEVVM 355 (805)
Q Consensus 346 aH~~Gi~Vil 355 (805)
+.++||+|.+
T Consensus 54 ~~~~gl~ls~ 63 (273)
T smart00518 54 LKENNIDVSV 63 (273)
T ss_pred HHHcCCCEEE
Confidence 8899999664
No 163
>PLN02950 4-alpha-glucanotransferase
Probab=35.76 E-value=56 Score=41.09 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=38.5
Q ss_pred eEEEEEEcCC---CCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC--CCCceeeEEEc
Q 003653 106 GVNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFD 169 (805)
Q Consensus 106 ~~~F~vwap~---a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~--~~g~~Y~y~i~ 169 (805)
.|+|+|-+|. .++|.|+ -...+..+|.+...++|.. .....|++.+.-. .....|+|.+.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls~---~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLNY---TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred eEEEEEecCccCCCCeEEEE-echhhcCCCCccccccccc---CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 4899999984 4566554 2222455677666666643 3467999987542 23578998874
No 164
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=35.43 E-value=48 Score=40.45 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCC
Q 003653 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSS 325 (805)
Q Consensus 258 ~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt 325 (805)
-..|+|..+.+-++.+++.|.+.|+|+|++....... ..+ +--|.+.+=|+.++-|=+
T Consensus 77 ~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~------~~d----SSPYsp~S~fAlNPlyId 134 (745)
T PLN03236 77 VGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGT------FWD----SYPYSSLSVHALHPLYLK 134 (745)
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCC------CCC----CCCcCcccccccChHHcC
Confidence 3479999988888999999999999999988531100 000 113788887888777654
No 165
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=35.39 E-value=6.3e+02 Score=31.72 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEccccccccCCCccccccccCccccCcccccCCCCCC-hHHHHHHhcCCCCCCc
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS-PPLIDLISNDPILRGV 482 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~-~~~~~~i~~d~~~~~~ 482 (805)
..|.+++.|.+....=.+ =+||+|+|.++.-+- .- .-++++.++ +.|+.
T Consensus 509 DsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPl--------------------------HVaEylLd~ARk--~nPnl 558 (1521)
T KOG3625|consen 509 DSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPL--------------------------HVAEYLLDAARK--LNPNL 558 (1521)
T ss_pred cChHHHHHHHHHHHHHHH--HhcceeeccCCCCch--------------------------hHHHHHHHHHHh--cCCCe
Confidence 347888888877665553 479999998864432 11 124454444 66799
Q ss_pred eeeeeecCCC
Q 003653 483 KLIAEAWDTG 492 (805)
Q Consensus 483 ~ligE~w~~~ 492 (805)
+++||-+...
T Consensus 559 YVvAELFtgS 568 (1521)
T KOG3625|consen 559 YVVAELFTGS 568 (1521)
T ss_pred EEEeeeccCC
Confidence 9999987554
No 166
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=34.20 E-value=82 Score=29.73 Aligned_cols=56 Identities=21% Similarity=0.441 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
-+||+-|.+.|++.|+.|++=+.+=+ |.+++++|. ..+.|+...+-
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvN---------------------------g~wydytG~-------~~~~r~~~y~k 80 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVN---------------------------GKWYDYTGL-------SKEMRQEYYKK 80 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-------------------------------HHHHHHTT---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc---------------------------HHHHHHhCC-------CHHHHHHHHHH
Confidence 68999999999999999998666432 223334443 35788999999
Q ss_pred HHHHHHcCce
Q 003653 416 LRYWVTEMHV 425 (805)
Q Consensus 416 l~~W~~e~gv 425 (805)
++.-++++|+
T Consensus 81 I~~~~~~~gf 90 (130)
T PF04914_consen 81 IKYQLKSQGF 90 (130)
T ss_dssp HHHHHHTTT-
T ss_pred HHHHHHHCCC
Confidence 9999999987
No 167
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=33.80 E-value=94 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.1
Q ss_pred hhhhccchhHHHHcCCceEEECccccc
Q 003653 263 YLGVVEKLDHLKDLGINCLELMPCHEF 289 (805)
Q Consensus 263 ~~g~~~~L~yLk~LGvt~I~L~Pi~~~ 289 (805)
=..+..++..|++-|+++|+|......
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 356778889999999999999998873
No 168
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=33.68 E-value=92 Score=33.77 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
...++.-|++|+++|++||+-+ ++ ..... + . ....-++.++++
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~-------GG----------~~g~~-~--------~-----------~~~~~~~~~~~a 95 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSF-------GG----------ASGTP-L--------A-----------TSCTSADQLAAA 95 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEe-------cC----------CCCCc-c--------c-----------cCcccHHHHHHH
Confidence 4668888999999999999822 11 01000 0 0 012345666777
Q ss_pred HHHHHHcCceeEEEEcccc
Q 003653 416 LRYWVTEMHVDGFRFDLAS 434 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~a~ 434 (805)
+...++.||+||+-||.-.
T Consensus 96 ~~~~i~~y~~dgiDfDiE~ 114 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEG 114 (294)
T ss_pred HHHHHHHhCCCeEEEeccC
Confidence 7778889999999998543
No 169
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=33.53 E-value=62 Score=35.95 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCC
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEG 365 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~ 365 (805)
.+-|+++.+.||+.||-||.|=||.|+.-+
T Consensus 218 ~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 218 EDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 788999999999999999999999999644
No 170
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=33.31 E-value=1.1e+02 Score=28.26 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=37.0
Q ss_pred eEEEEEEcC---CCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003653 106 GVNFSIFSS---NAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (805)
Q Consensus 106 ~~~F~vwap---~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~-~~g~~Y~y~i~ 169 (805)
-++|+|-+| ..+.|.|+- ....+.+|.+...++|... ...+..|++.+.-. .....|+|-+.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G-~~~~LG~W~~~~a~~l~~~-~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVG-SLPVLGNWQPEKAVPLEKE-DDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEe-ChHHhCCCCHHhCeeCccC-CCcCCccEEEEEECCCCeEEEEEEEE
Confidence 378999885 234555541 1112566776677788542 12568999886432 23577887774
No 171
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=33.02 E-value=61 Score=38.07 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=43.4
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|+.|+++|+|.|+|-. ..+.. .-.-.++..+ +.++..+.++.++
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~~d----------------------~VL~~inRgh-----------t~~~v~~Ai~~lr 252 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTIYN----------------------DILERTKRGH-----------TVRDVVEATRLLR 252 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCH----------------------HHHHHhCCCC-----------CHHHHHHHHHHHH
Confidence 578999999999999753 22211 1111222211 3789999999999
Q ss_pred HcCCEEEEEEecccc
Q 003653 348 KRGIEVVMDVVFNHT 362 (805)
Q Consensus 348 ~~Gi~VilDvV~NH~ 362 (805)
+.|++|.+|+.++--
T Consensus 253 ~~G~~v~~~LM~GLP 267 (522)
T TIGR01211 253 DAGLKVVYHIMPGLP 267 (522)
T ss_pred HcCCeEEEEeecCCC
Confidence 999999999998853
No 172
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.97 E-value=61 Score=33.15 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=18.5
Q ss_pred ccchhHHHHcCCceEEECcccc
Q 003653 267 VEKLDHLKDLGINCLELMPCHE 288 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~ 288 (805)
...+..||++|.+.|-.+|+--
T Consensus 138 etAiaml~dmG~~SiKffPM~G 159 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMGG 159 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecCC
Confidence 3458999999999999999743
No 173
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=32.89 E-value=74 Score=37.12 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
.++|..|++.||+.|.|.| ..+. ..-.-.+ .+-. +.+++.+.++.|
T Consensus 269 ~e~L~~Lk~~Gv~RISIGv-QS~~----------------------d~vLk~i-gR~h----------t~e~v~~ai~~a 314 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINP-QTMN----------------------DETLKAI-GRHH----------TVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhcCCCeEEEcC-CcCC----------------------HHHHHHh-CCCC----------CHHHHHHHHHHH
Confidence 3578999999999999765 2211 1111122 1211 389999999999
Q ss_pred HHcCC-EEEEEEeccccc
Q 003653 347 HKRGI-EVVMDVVFNHTV 363 (805)
Q Consensus 347 H~~Gi-~VilDvV~NH~~ 363 (805)
++.|+ .|-+|+.++..+
T Consensus 315 r~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 315 REMGFDNINMDLIIGLPG 332 (488)
T ss_pred HhCCCCeEEEEEEeCCCC
Confidence 99999 788999988643
No 174
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=32.66 E-value=56 Score=39.82 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.4
Q ss_pred CCceeeecccCCCcchHHHHh
Q 003653 549 PWNSINFVCAHDGFSLADLVS 569 (805)
Q Consensus 549 p~~~vnfv~nHD~~rl~d~~~ 569 (805)
+.++|.|+.+||+.|+.....
T Consensus 539 ~~~sva~t~THD~pTl~Gww~ 559 (695)
T PRK11052 539 PEQSMATLTTHDLPTLRGYWQ 559 (695)
T ss_pred cCCeEEECCCCCChhHHHHHh
Confidence 568899999999999876553
No 175
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.55 E-value=80 Score=33.90 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=41.7
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
.+.+..||+.|++.|.+. .|. + +.-|-.+.+. .+.++..+.++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~-~---------------------~~~~~~i~~~-----------~s~~~~~~ai~~l 167 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDT-S---------------------QEFYSNIIST-----------HTYDDRVDTLENA 167 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccC-C---------------------HHHHhhccCC-----------CCHHHHHHHHHHH
Confidence 456799999999999987 331 1 0111112111 1378899999999
Q ss_pred HHcCCEEEEEEeccc
Q 003653 347 HKRGIEVVMDVVFNH 361 (805)
Q Consensus 347 H~~Gi~VilDvV~NH 361 (805)
|+.||+|...+++.+
T Consensus 168 ~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 168 KKAGLKVCSGGIFGL 182 (296)
T ss_pred HHcCCEEEEeEEEeC
Confidence 999999998888765
No 176
>PLN02692 alpha-galactosidase
Probab=32.09 E-value=2.8e+02 Score=31.60 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=46.3
Q ss_pred CcEEEEEEEcCCCCEEEEEEeCCCCcEEEEcCC--C--CC---CceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCC
Q 003653 711 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK--R--PG---YRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLD 783 (805)
Q Consensus 711 ~~vlaf~R~~~~~~~~~Vv~N~~~~~~~v~Lp~--~--~g---~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (805)
..+-++.+.-.++..+++++|.+..++++.++. . .+ .+.++|..... +.. ...+
T Consensus 332 ~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~----------~g~---------~~~~ 392 (412)
T PLN02692 332 GDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKT----------LKQ---------HFVG 392 (412)
T ss_pred CCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCc----------cCc---------cccc
Confidence 457777777655567899999999888887663 1 11 12344442211 000 0123
Q ss_pred ceeEEeeCCeEEEEEeCCC
Q 003653 784 ANLYPMLSYSSIILLLSPD 802 (805)
Q Consensus 784 ~~~~~v~~~s~~vl~~~~~ 802 (805)
..+++|||..+++|.++++
T Consensus 393 ~~~~~v~~Hg~~l~rl~~~ 411 (412)
T PLN02692 393 NLTATVDSHACKMYILKPI 411 (412)
T ss_pred eEEEEECCceEEEEEEecC
Confidence 4678999999999998875
No 177
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=31.35 E-value=1.2e+02 Score=32.83 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=32.3
Q ss_pred CcEEEEEeeccccccCC----CCCCCCcChhhhccchhHHHHcCCceEEECcccc
Q 003653 238 DLIIYEVHVRGFTRHES----SKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHE 288 (805)
Q Consensus 238 ~~vIYei~v~~Ft~~~~----s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~ 288 (805)
+-.||=++|..=.+... -+...+=....+.+.+..+.++||++|-|-|+.+
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~ 85 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISH 85 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 44677777753211100 0111233466777888999999999999999943
No 178
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=30.95 E-value=73 Score=35.51 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=43.0
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|..|+++||+.|.|-. ..+. +.-+-.+ .+-. +.++..+.|+.++
T Consensus 101 e~l~~l~~~Gv~risiGv-qS~~----------------------~~~l~~l-gR~~----------~~~~~~~ai~~l~ 146 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-QSFR----------------------DDKLLFL-GRQH----------SAKNIAPAIETAL 146 (360)
T ss_pred HHHHHHHHcCCCEEEEec-ccCC----------------------hHHHHHh-CCCC----------CHHHHHHHHHHHH
Confidence 578999999999998753 2221 1111122 2222 3788999999999
Q ss_pred HcCCE-EEEEEeccccc
Q 003653 348 KRGIE-VVMDVVFNHTV 363 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~ 363 (805)
+.|+. |-+|+.++..+
T Consensus 147 ~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 147 KSGIENISLDLMYGLPL 163 (360)
T ss_pred HcCCCeEEEeccCCCCC
Confidence 99996 78999988754
No 179
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.73 E-value=1.6e+02 Score=31.55 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHH
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 415 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~ 415 (805)
.+++.+-|+.|+++||+|.--+.++--+ +-++.|++.
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLPg-------------------------------------------E~~~~mleT 203 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLPG-------------------------------------------ETRDEMLET 203 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCCC-------------------------------------------CCHHHHHHH
Confidence 5789999999999999998655543211 245788888
Q ss_pred HHHHHHcCceeEEEEccccccc
Q 003653 416 LRYWVTEMHVDGFRFDLASIMT 437 (805)
Q Consensus 416 l~~W~~e~gvDGfR~D~a~~l~ 437 (805)
++.-. +.+|||+.+-..+.+.
T Consensus 204 ak~v~-~~~v~GIKlH~Lhvvk 224 (312)
T COG1242 204 AKIVA-ELGVDGIKLHPLHVVK 224 (312)
T ss_pred HHHHH-hcCCceEEEEEEEEec
Confidence 88665 8999999997666553
No 180
>PRK01060 endonuclease IV; Provisional
Probab=30.68 E-value=71 Score=33.95 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=36.4
Q ss_pred hhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003653 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLL 342 (805)
Q Consensus 263 ~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~l 342 (805)
+.++.+.|+.++++|+++|+|.+--. ..+.. +.+ +.+++++|
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p--------------------~~~~~-------~~~-----------~~~~~~~l 52 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP--------------------QQWKR-------KPL-----------EELNIEAF 52 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC--------------------CCCcC-------CCC-----------CHHHHHHH
Confidence 34477788999999999999965211 00110 111 26778888
Q ss_pred HHHHHHcCCEE
Q 003653 343 VREAHKRGIEV 353 (805)
Q Consensus 343 V~~aH~~Gi~V 353 (805)
-+.+.++||++
T Consensus 53 k~~~~~~gl~~ 63 (281)
T PRK01060 53 KAACEKYGISP 63 (281)
T ss_pred HHHHHHcCCCC
Confidence 88899999995
No 181
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=30.65 E-value=71 Score=36.60 Aligned_cols=29 Identities=7% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEE-EEEecccccC
Q 003653 336 INEFKLLVREAHKRGIEVV-MDVVFNHTVE 364 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~Vi-lDvV~NH~~~ 364 (805)
.++..+.|+.+++.|+.+| +|+.++.-..
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 7889999999999999865 9999887654
No 182
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.59 E-value=73 Score=37.83 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEec
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVF 359 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~ 359 (805)
.-||.+||+.+|+.|+-|||=+=+
T Consensus 87 ~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 87 RYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred hhHHHHHHHHHHHCCeEEEecCCC
Confidence 688999999999999999997653
No 183
>PLN02635 disproportionating enzyme
Probab=30.16 E-value=44 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCcChhhhc-cchhHHHHcCCceEEECccccc
Q 003653 259 HPGTYLGVV-EKLDHLKDLGINCLELMPCHEF 289 (805)
Q Consensus 259 ~~G~~~g~~-~~L~yLk~LGvt~I~L~Pi~~~ 289 (805)
..|||-... +-++.|++.|.+.++|+|++..
T Consensus 44 GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 44 GIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 469998765 6779999999999999999774
No 184
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.84 E-value=1.4e+02 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.4
Q ss_pred ChhhhccchhHHHHcCCceEEECcccc
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHE 288 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~ 288 (805)
.+..+.+.+..+.++||++|-|-|+-+
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~ 75 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPL 75 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 467788889999999999999999953
No 185
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=29.46 E-value=83 Score=35.02 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=44.0
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|+.|+++|++.|.| ++..+.. .-.-.+... .+.++..+.|+.++
T Consensus 104 e~l~~lk~~G~nrisi-GvQS~~d----------------------~vL~~l~R~-----------~~~~~~~~ai~~lr 149 (353)
T PRK05904 104 SQINLLKKNKVNRISL-GVQSMNN----------------------NILKQLNRT-----------HTIQDSKEAINLLH 149 (353)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCH----------------------HHHHHcCCC-----------CCHHHHHHHHHHHH
Confidence 6789999999999875 4443321 111111111 13789999999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |-+|+.++..+.
T Consensus 150 ~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 150 KNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HcCCCcEEEEEeecCCCC
Confidence 99997 999999987543
No 186
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=29.25 E-value=4.1e+02 Score=32.38 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred hccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 003653 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVRE 345 (805)
Q Consensus 266 ~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~ 345 (805)
+-..|++++++|+|+|+|....+... + |=.-.=|| |+.++-- +.+-|-+..=.
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~g-----------d------g~~~~lYF-pnr~lPm---------raDlfnrvawq 388 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKG-----------D------GNIRQVYF-PNRWIPM---------RQDLFNRVVWQ 388 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCC-----------C------CceeeEEe-cCCcccH---------HHhhhhHHHHH
Confidence 33346999999999999998866422 1 11111122 2222211 24446666466
Q ss_pred HHH-cCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCC-CccccCCCCHHHHHHHHHHHHHHHHcC
Q 003653 346 AHK-RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG-CGNTFNCNHPVVRQFIVDCLRYWVTEM 423 (805)
Q Consensus 346 aH~-~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g-~~~~ln~~~~~vr~~i~d~l~~W~~e~ 423 (805)
++. .|++|..-+-.=-..-.. ..|. ...+ ++++.-..-.. +=..|..-+|++|+.|.+...-....-
T Consensus 389 l~tR~~v~vyAWmpvl~~~l~~-~~~~--------~~~~--~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~ 457 (672)
T PRK14581 389 LASRPDVEVYAWMPVLAFDMDP-SLPR--------ITRI--DPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSA 457 (672)
T ss_pred HHhhhCceEEEeeehhhccCCc-ccch--------hhhc--ccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 664 499998766533221100 0000 0000 11110000000 002455567999999999999998666
Q ss_pred ceeEEEEc
Q 003653 424 HVDGFRFD 431 (805)
Q Consensus 424 gvDGfR~D 431 (805)
.|||+=|.
T Consensus 458 ~~~Gilfh 465 (672)
T PRK14581 458 PIDGIIYH 465 (672)
T ss_pred CCCeEEec
Confidence 89999983
No 187
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=29.19 E-value=1.2e+02 Score=27.28 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=38.1
Q ss_pred CcEEEEEEEcCCCCEEEE-EEeCCC-CcEEEEcCCCC-CCceEEEecCCCCCCCCccCCCCchhhhhhhhccCCCCceeE
Q 003653 711 SRFVAFTLIDSVKGEIYV-AFNASH-LPVIISLPKRP-GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLY 787 (805)
Q Consensus 711 ~~vlaf~R~~~~~~~~~V-v~N~~~-~~~~v~Lp~~~-g~~w~~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (805)
...+++.|+..+++..+| .+|... ..++++|+-+. +..|...+-+.......-....+. ...+.....+..++
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~~~~~~~~----~~~~~v~~~~~l~i 89 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADYTNPEAYK----IETRKVTSGDKLTI 89 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCTTCTT-EE----EEEEEE-TT-EEEE
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccccCCcceE----EEEEEECCCCEEEE
Confidence 467888888743355444 667653 33455555554 335654443322211000000000 00011112346789
Q ss_pred EeeCCeEEEEEeCC
Q 003653 788 PMLSYSSIILLLSP 801 (805)
Q Consensus 788 ~v~~~s~~vl~~~~ 801 (805)
+|.|+...|++.+|
T Consensus 90 ~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 90 TLAPGGGFVIRITP 103 (103)
T ss_dssp EE-TT-EEEEEEEE
T ss_pred EEeCCCcEEEEEEC
Confidence 99999988887653
No 188
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=28.84 E-value=1.2e+02 Score=26.32 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=34.9
Q ss_pred EEEEEEcC--CCCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003653 107 VNFSIFSS--NAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (805)
Q Consensus 107 ~~F~vwap--~a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~-~~g~~Y~y~i~ 169 (805)
+.|+|-.. -.++|.|+- ...++.+|.+...++|.. ..++.|++.+.-. .....|+|.+.
T Consensus 3 v~F~v~~~t~~ge~l~v~G-~~~~lG~W~~~~a~~l~~---~~~~~W~~~v~l~~~~~~eYKy~~~ 64 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVG-NVPELGNWSPANAVALSA---ATYPVWSGTVDLPAGTAIEYKYIKK 64 (95)
T ss_pred EEEEEEEECCCCCEEEEEe-CcHHhCCCChhhCccCCC---CCCCCEEEEEEeCCCCeEEEEEEEE
Confidence 67777654 345666651 112456677666677753 4568998887432 23467777653
No 189
>PRK07094 biotin synthase; Provisional
Probab=28.79 E-value=77 Score=34.62 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=43.6
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
.+.+..|++.|++.|.+.. |. .++.-|-.+.+. .+.++..+.++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--Es---------------------~~~~~~~~i~~~-----------~s~~~~~~~i~~l 174 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--ET---------------------ADKELYAKLHPG-----------MSFENRIACLKDL 174 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--cc---------------------CCHHHHHHhCCC-----------CCHHHHHHHHHHH
Confidence 3567899999999988432 21 112222222221 1378999999999
Q ss_pred HHcCCEEEEEEeccccc
Q 003653 347 HKRGIEVVMDVVFNHTV 363 (805)
Q Consensus 347 H~~Gi~VilDvV~NH~~ 363 (805)
|+.||.|-.++++.+-+
T Consensus 175 ~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 175 KELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHcCCeecceEEEECCC
Confidence 99999999999988743
No 190
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=28.64 E-value=73 Score=38.93 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecc
Q 003653 337 NEFKLLVREAHKRGIEVVMDVVFN 360 (805)
Q Consensus 337 ~e~k~lV~~aH~~Gi~VilDvV~N 360 (805)
.+++++-+.|+++||.+|-|+-+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 567788888999999999999865
No 191
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=28.48 E-value=1.6e+02 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=37.3
Q ss_pred EEEEEEcCC---CCeEEEEEEeCCCccCCceeeeeecccccCCCCCEEEEEEcCCC--CCceeeEEEc
Q 003653 107 VNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF--KDMLYGYKFD 169 (805)
Q Consensus 107 ~~F~vwap~---a~~v~l~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~v~~~~--~g~~Y~y~i~ 169 (805)
|.|+|..|. -+.|.|+- ...++.+|.+...++|.. ..+..|++.++-.. ....|+|.+.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~G-s~~~LG~W~~~~a~~l~~---~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTG-SSPELGNWDPQKALKLSD---VGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred EEEEEEcCccCCCCEEEEEE-ChHHhCCCCccccccCCC---CCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 789999874 34555542 112345577666778753 45689998875432 2467888775
No 192
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.31 E-value=91 Score=35.05 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=43.5
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|..|+++|||.|.|-. ..+ ++.-+-.+... . +.++..+-|+.++
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~----------------------~~~~L~~l~r~-~----------~~~~~~~ai~~~~ 153 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSF----------------------SEEKLKRLGRI-H----------GPDEAKRAAKLAQ 153 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcC----------------------CHHHHHHhCCC-C----------CHHHHHHHHHHHH
Confidence 688999999999999753 221 11112122211 1 3788889999999
Q ss_pred HcCCEE-EEEEecccccC
Q 003653 348 KRGIEV-VMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~V-ilDvV~NH~~~ 364 (805)
+.|+.. -+|+.++..+.
T Consensus 154 ~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 154 GLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HcCCCeEEEEeecCCCCC
Confidence 999975 59999887543
No 193
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=27.96 E-value=85 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEE
Q 003653 336 INEFKLLVREAHKRGIEVVMD 356 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilD 356 (805)
.++.++||+.+-+.|..|.-.
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred hHHHHHHHHHHHhcccEEehh
Confidence 789999999999999988654
No 194
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=27.84 E-value=93 Score=33.99 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEeccc
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
+.+++.+.++.+|++||.|.+++.++.
T Consensus 153 t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 378999999999999999999999874
No 195
>PLN02803 beta-amylase
Probab=27.84 E-value=2.3e+02 Score=33.01 Aligned_cols=85 Identities=14% Similarity=0.286 Sum_probs=55.8
Q ss_pred CCcEEEEEeeccccccCCCCCCCCcCh---hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcc
Q 003653 237 RDLIIYEVHVRGFTRHESSKTEHPGTY---LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (805)
Q Consensus 237 ~~~vIYei~v~~Ft~~~~s~~~~~G~~---~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (805)
...-+|-+.+-+.-.. .|++ +++...|..||.+||+.|-+ +|+ ||.--
T Consensus 84 ~~vpvyVMlPLd~V~~-------~~~~~~~~~l~~~L~~LK~~GVdGVmv-DVW---------------------WGiVE 134 (548)
T PLN02803 84 SGVPVFVMLPLDTVTM-------GGNLNKPRAMNASLMALRSAGVEGVMV-DAW---------------------WGLVE 134 (548)
T ss_pred CceeEEEEeecceecc-------CCcccCHHHHHHHHHHHHHcCCCEEEE-Eee---------------------eeeec
Confidence 3456677666554321 2445 77888999999999999975 332 44322
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccC
Q 003653 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 364 (805)
Q Consensus 314 ~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~ 364 (805)
.. . ...|- ..-.++|++.+.+.||+|..=+-|.-++.
T Consensus 135 ~~--~-p~~Yd-----------WsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 135 KD--G-PMKYN-----------WEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred cC--C-CCcCC-----------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 11 0 12221 67788888888999999988777766544
No 196
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.40 E-value=1.9e+02 Score=33.66 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=66.8
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
.-|....+.+.-+|+||+++-=++=-+.--- . .|... ++ ..+++=.+
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~----------P------~g~~~-----~N------------~~gl~~Y~ 96 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIF----------P------TGYGE-----VN------------EKGVEFYH 96 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhcc----------C------CCCCC-----cC------------HHHHHHHH
Confidence 4577788889999999999987764333110 0 11100 11 12477899
Q ss_pred HHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHH
Q 003653 341 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 420 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~ 420 (805)
+||++|.++||+.|+ .+.|.. -+.|... ..| +.++++.+++.+.++.-+
T Consensus 97 ~lid~l~~~GI~P~V--TL~H~d---------------lP~~L~~--------~GG------W~n~~~v~~F~~YA~~~f 145 (467)
T TIGR01233 97 KLFAECHKRHVEPFV--TLHHFD---------------TPEALHS--------NGD------FLNRENIEHFIDYAAFCF 145 (467)
T ss_pred HHHHHHHHcCCEEEE--eccCCC---------------CcHHHHH--------cCC------CCCHHHHHHHHHHHHHHH
Confidence 999999999999997 445642 1223221 111 457889999999999989
Q ss_pred HcCcee
Q 003653 421 TEMHVD 426 (805)
Q Consensus 421 ~e~gvD 426 (805)
++|| |
T Consensus 146 ~~fg-d 150 (467)
T TIGR01233 146 EEFP-E 150 (467)
T ss_pred HHhC-C
Confidence 8887 5
No 197
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=27.16 E-value=1.9e+02 Score=29.36 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCcChhhhccch-hHHHHcCCceEEECccc
Q 003653 259 HPGTYLGVVEKL-DHLKDLGINCLELMPCH 287 (805)
Q Consensus 259 ~~G~~~g~~~~L-~yLk~LGvt~I~L~Pi~ 287 (805)
..++--++-+.| +.|.+.|+.+|+---++
T Consensus 28 ~~~~V~~VG~~L~~~Le~~Gi~vihd~t~~ 57 (196)
T TIGR02867 28 SEGNITKVGDRLAKELEEKGIGVIHDKTVH 57 (196)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEeCCcc
Confidence 357788888888 89999999999966543
No 198
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.95 E-value=1.9e+02 Score=32.19 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=43.9
Q ss_pred EEEE-EeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccC
Q 003653 240 IIYE-VHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (805)
Q Consensus 240 vIYe-i~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~ 318 (805)
|..| +.+.++.++ -..+.+..+.|+.+++ +|.|+|.+..+. .+|. .
T Consensus 256 I~iey~LIpGvNDs----------~e~a~~La~~l~~l~~-~VnLIPynp~~~-----------------~~~~-----~ 302 (345)
T PRK14457 256 VSFEYILLGGVNDL----------PEHAEELANLLRGFQS-HVNLIPYNPIDE-----------------VEFQ-----R 302 (345)
T ss_pred EEEEEEEECCcCCC----------HHHHHHHHHHHhcCCC-eEEEecCCCCCC-----------------CCCC-----C
Confidence 4444 466666552 2334444467777776 799999877431 1121 1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003653 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (805)
Q Consensus 319 ~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~Vil 355 (805)
| +.++++++.+.+.++||.|.+
T Consensus 303 p---------------s~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 303 P---------------SPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred C---------------CHHHHHHHHHHHHHCCCeEEE
Confidence 1 378899999999999999864
No 199
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.80 E-value=2e+02 Score=32.38 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred EEEE-EeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccC
Q 003653 240 IIYE-VHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFS 318 (805)
Q Consensus 240 vIYe-i~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~ 318 (805)
|+++ +.+.++.++ -..+.+..+.|+.+++ .|.|+|.++... .+|-.
T Consensus 263 I~irypLIpGvNDs----------~e~a~~La~ll~~l~~-~VnLIPYN~~~~----------------------~~~~~ 309 (372)
T PRK11194 263 VTVEYVMLDHVNDG----------TEHAHQLAELLKDTPC-KINLIPWNPFPG----------------------APYGR 309 (372)
T ss_pred EEEEEEeECCCCCC----------HHHHHHHHHHHhcCCc-eEEEecCCCCCC----------------------CCCCC
Confidence 4444 567777663 3334444467788876 999999876321 11111
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003653 319 PMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (805)
Q Consensus 319 ~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~Vil 355 (805)
| +.+++++|.+.+.++||.|.+
T Consensus 310 p---------------s~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 310 S---------------SNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred C---------------CHHHHHHHHHHHHHCCCeEEE
Confidence 1 368888999999999999965
No 200
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=26.67 E-value=1.7e+02 Score=31.47 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
+.+.+.+.-+|+-|+|++-+ +.-. + ++.--|...|-+ ....++ .....|++.+|
T Consensus 77 k~~de~fk~ikdn~~Na~Vi----D~Kd-----------d--~G~lty~s~d~~--~~~~~s-------v~~f~Di~~~i 130 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVI----DVKD-----------D--YGELTYPSSDEI--NKYTKS-------VNKFKDIEPVI 130 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEE----EecC-----------C--CccEeccccchh--hhhhhc-------cccccccHHHH
Confidence 34556678999999999864 2211 0 011224444321 111121 11257889999
Q ss_pred HHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCC-Cccc-----cCCCccccCCCCHHHHHHHHHHHH
Q 003653 344 REAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKG-EFYN-----YSGCGNTFNCNHPVVRQFIVDCLR 417 (805)
Q Consensus 344 ~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g-~~~~-----~~g~~~~ln~~~~~vr~~i~d~l~ 417 (805)
++|+++||.+|.-+|.=.- .. ++.+.+.....|-. +..+ .+.+ ....--=.+--++.+++|=+.+.+
T Consensus 131 KkaKe~giY~IARiVvFKD---~~---l~~~n~fk~av~~~-gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAK 203 (400)
T COG1306 131 KKAKENGIYAIARIVVFKD---TI---LAKENPFKIAVYKD-GKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAK 203 (400)
T ss_pred HHHHhcCeEEEEEEEEeee---ee---EEeecCceEEEEcC-CCcchhhhcccccccccceeeecccchhhhhhhHHHHH
Confidence 9999999999999884221 10 00111111010100 0000 0111 000000134457889999999988
Q ss_pred HHHHcCceeEEEEcccccc
Q 003653 418 YWVTEMHVDGFRFDLASIM 436 (805)
Q Consensus 418 ~W~~e~gvDGfR~D~a~~l 436 (805)
.-+ ++|+|-+.||-...-
T Consensus 204 Ea~-~fGfdEiQFDYIRFP 221 (400)
T COG1306 204 EAA-KFGFDEIQFDYIRFP 221 (400)
T ss_pred HHH-HcCccceeeeEEEcc
Confidence 887 899999999866443
No 201
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.55 E-value=1.6e+02 Score=32.00 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.5
Q ss_pred ChhhhccchhHHHHcCCceEEECcccc
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHE 288 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~ 288 (805)
....+.+.+..+.++|+++|.|-|+..
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~ 78 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTP 78 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 467788889999999999999999953
No 202
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=75 Score=37.01 Aligned_cols=140 Identities=13% Similarity=0.036 Sum_probs=82.4
Q ss_pred ChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHH
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKL 341 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~ 341 (805)
|-..+.+.++-.|+.||--..|==-+. +. . |.--=+..|++.....|++ -+..
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDDGwf-------g~-r-------ndd~~slGDWlv~seKfPs------------giE~ 359 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDDGWF-------GG-R-------NDDLKSLGDWLVNSEKFPS------------GIEE 359 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEccccc-------cc-c-------Ccchhhhhceecchhhccc------------cHHH
Confidence 345566677889999964444321111 00 0 0001245577888888864 3778
Q ss_pred HHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccccCCCccccCCCCHHHHHHHHHHHHHHHH
Q 003653 342 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 421 (805)
Q Consensus 342 lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~~ln~~~~~vr~~i~d~l~~W~~ 421 (805)
||++.|++|+.-=+=+-+-=+..++..+ ..+++|+...+ |.-....-.+--++..+|.|..++...+...+.
T Consensus 360 li~~I~e~Gl~fGIWlePemvs~dSdlf-------rqHPDWvvk~~-G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~ 431 (687)
T COG3345 360 LIEAIAENGLIFGIWLEPEMVSEDSDLF-------RQHPDWVVKVN-GYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLL 431 (687)
T ss_pred HHHHHHHcCCccceeecchhcccchHHH-------hhCCCeEEecC-CccccccccchhhhccChHHHHHhhhHHHHHHH
Confidence 8999999999988877776665554322 24567776632 332222212234677788888888876655444
Q ss_pred cCceeEEEEcccccc
Q 003653 422 EMHVDGFRFDLASIM 436 (805)
Q Consensus 422 e~gvDGfR~D~a~~l 436 (805)
..-||=.|-|.-..+
T Consensus 432 ~~~v~ylkwdmnr~l 446 (687)
T COG3345 432 FHLVSYLKWDMNREL 446 (687)
T ss_pred hhhHHHHHHHhCcce
Confidence 556666666655444
No 203
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.82 E-value=2e+02 Score=32.15 Aligned_cols=70 Identities=6% Similarity=0.163 Sum_probs=46.0
Q ss_pred CcEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcccccc
Q 003653 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (805)
Q Consensus 238 ~~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~ 317 (805)
...|=-+.+.+++++ ...+.+..+.|+.+++ .|.|+|.++.+. ..|-
T Consensus 263 ~i~ieyvLI~GvNDs----------~e~a~~La~llk~l~~-~VnLIPyn~~~~----------------------~~~~ 309 (356)
T PRK14462 263 RVMFEYLVIKDVNDD----------LKSAKKLVKLLNGIKA-KVNLILFNPHEG----------------------SKFE 309 (356)
T ss_pred eEEEEEEEECCCCCC----------HHHHHHHHHHHhhcCc-EEEEEeCCCCCC----------------------CCCC
Confidence 334444677777772 3444445577888876 899999886331 1221
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003653 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 355 (805)
Q Consensus 318 ~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~Vil 355 (805)
.| +.+.++++.+.+.++||.|.+
T Consensus 310 ~p---------------s~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 310 RP---------------SLEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred CC---------------CHHHHHHHHHHHHHCCCcEEE
Confidence 11 267888888889999998865
No 204
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=25.63 E-value=1.3e+02 Score=32.84 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=67.3
Q ss_pred CcEEEEEeeccccccCC----CCCCCCcChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCcc
Q 003653 238 DLIIYEVHVRGFTRHES----SKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYST 313 (805)
Q Consensus 238 ~~vIYei~v~~Ft~~~~----s~~~~~G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~ 313 (805)
+-.||=++|..=.+... -+...+=+...+.+.+..+.++||.+|.|-|+......+.. +...|++
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~-----------gs~a~~~ 95 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEE-----------GSEAYNP 95 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS------------GGGGST
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcc-----------hhcccCC
Confidence 34677777764222100 00111224567778889999999999999999653221110 0111222
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEEecccccCCCCCCCccccCCCCCccceeeCCCCCccc
Q 003653 314 INYFSPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN 393 (805)
Q Consensus 314 ~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~ 393 (805)
.+ -...--..|++.. -.|-||.||.+..-...+..| .+. +.+|.
T Consensus 96 ~g-------------------~v~~air~iK~~~-pdl~vi~Dvclc~YT~hGHcG-il~------------~~~g~--- 139 (324)
T PF00490_consen 96 DG-------------------LVQRAIRAIKKAF-PDLLVITDVCLCEYTSHGHCG-ILD------------DEDGE--- 139 (324)
T ss_dssp TS-------------------HHHHHHHHHHHHS-TTSEEEEEE-STTTBTSSSSS-EB-------------CTTSS---
T ss_pred CC-------------------hHHHHHHHHHHhC-CCcEEEEecccccccCCCceE-EEE------------CCCCe---
Confidence 22 1333333333333 569999999998765433222 000 11111
Q ss_pred cCCCccccCCCCHHHHHHHHHHHHHHHHcCceeEEE
Q 003653 394 YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 429 (805)
Q Consensus 394 ~~g~~~~ln~~~~~vr~~i~d~l~~W~~e~gvDGfR 429 (805)
-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 140 ---------idND~Tl~~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 140 ---------IDNDETLERLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp ---------BEHHHHHHHHHHHHHHHH-HHT-SEEE
T ss_pred ---------EecHHHHHHHHHHHHHHH-HhCCCeec
Confidence 124466677777666666 66887654
No 205
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=24.95 E-value=1.6e+02 Score=30.63 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=46.0
Q ss_pred cEEEEEeeccccccCCCCCCCCcChhhhccchhHHHHcC-CceEEECcccccCcccccccCCcCCCCCcCccCCcccccc
Q 003653 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG-INCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYF 317 (805)
Q Consensus 239 ~vIYei~v~~Ft~~~~s~~~~~G~~~g~~~~L~yLk~LG-vt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~ 317 (805)
..|--+.+.++.+. -..+.+-++.|++++ +..|+|+|.+..+... |...+.-
T Consensus 164 v~i~~~li~g~nd~----------~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~-----------------~~~~~~~ 216 (246)
T PRK11145 164 TWIRYVVVPGWTDD----------DDSAHRLGEFIKDMGNIEKIELLPYHELGKHK-----------------WEAMGEE 216 (246)
T ss_pred EEEEEEEECCCCCC----------HHHHHHHHHHHHhcCCcceEEEecCCccchhH-----------------HHHcCCc
Confidence 44555566666552 123333445666665 7899999998754311 1111100
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003653 318 SPMISYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 354 (805)
Q Consensus 318 ~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH~~Gi~Vi 354 (805)
-+...+. ..+.++++++.+.+.+.|++|+
T Consensus 217 ~~~~~~~--------~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 217 YKLDGVK--------PPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred ccccCCC--------CCCHHHHHHHHHHHHHcCCccc
Confidence 0001111 1248999999999999999874
No 206
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=24.90 E-value=3.8e+02 Score=29.15 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred ChhhhccchhHHHHcCCceEEECccc
Q 003653 262 TYLGVVEKLDHLKDLGINCLELMPCH 287 (805)
Q Consensus 262 ~~~g~~~~L~yLk~LGvt~I~L~Pi~ 287 (805)
+...+.+.+..+.++|+++|-|-|+-
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIP 74 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 46778888999999999999999994
No 207
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.79 E-value=1.1e+02 Score=34.31 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=42.8
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
+.|..|+++|++.|.|.. ..+. +.-+-.+.. - .+.++..+.|+.++
T Consensus 101 e~l~~l~~~G~~rvsiGv-qS~~----------------------~~~l~~l~r-~----------~~~~~~~~~i~~l~ 146 (377)
T PRK08599 101 EKLQVLKDSGVNRISLGV-QTFN----------------------DELLKKIGR-T----------HNEEDVYEAIANAK 146 (377)
T ss_pred HHHHHHHHcCCCEEEEec-ccCC----------------------HHHHHHcCC-C----------CCHHHHHHHHHHHH
Confidence 578999999999988653 2221 111111211 1 13789999999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |-+|+.++.-+.
T Consensus 147 ~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 147 KAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HcCCCcEEEeeecCCCCC
Confidence 99998 678999887543
No 208
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.52 E-value=1.4e+02 Score=33.26 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCEEEEEEe
Q 003653 339 FKLLVREAHKRGIEVVMDVV 358 (805)
Q Consensus 339 ~k~lV~~aH~~Gi~VilDvV 358 (805)
...||+.||++||+|+.=-|
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTv 299 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTL 299 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEe
Confidence 46899999999999987555
No 209
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.52 E-value=1.2e+02 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=41.4
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
-++......++...++|++.|-+.--... ...+ ...++++
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~----------------------~~~~------------------~~~~~i~ 112 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGS----------------------EEER------------------EMLEELA 112 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCC----------------------chHH------------------HHHHHHH
Confidence 35566666788899999999855432210 0000 0278999
Q ss_pred HHHHHHHHcCCEEEEEEec
Q 003653 341 LLVREAHKRGIEVVMDVVF 359 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~ 359 (805)
++++.||+.|+++|+|+..
T Consensus 113 ~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 113 RVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHcCCCEEEEEec
Confidence 9999999999999998644
No 210
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=24.26 E-value=76 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEE
Q 003653 333 HDAINEFKLLVREAHKRGIEVVMD 356 (805)
Q Consensus 333 ~~~~~e~k~lV~~aH~~Gi~VilD 356 (805)
+.+..|++.+-+.+.++||+|++|
T Consensus 18 i~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 18 IMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred eeeHHHHHHHHHHHHhCCcEEEEC
Confidence 345899999999999999999998
No 211
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.23 E-value=61 Score=34.72 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEec
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVF 359 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~ 359 (805)
.+-+|+||++|++- |.|+||+.-
T Consensus 136 KE~vR~~I~~A~kV-IAIVMD~FT 158 (284)
T PF07894_consen 136 KEVVRRMIQQAQKV-IAIVMDVFT 158 (284)
T ss_pred HHHHHHHHHHhcce-eEEEeeccc
Confidence 67789999999998 999999863
No 212
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.04 E-value=1.1e+02 Score=35.30 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEEecccc
Q 003653 335 AINEFKLLVREAHKRGIEVVMDVVFNHT 362 (805)
Q Consensus 335 ~~~e~k~lV~~aH~~Gi~VilDvV~NH~ 362 (805)
+.++..+.++.||+.||.|..++++..-
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 3788999999999999999999998753
No 213
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=23.75 E-value=2.2e+02 Score=31.08 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.6
Q ss_pred CCcChhhhccchhHHHHcCCc
Q 003653 259 HPGTYLGVVEKLDHLKDLGIN 279 (805)
Q Consensus 259 ~~G~~~g~~~~L~yLk~LGvt 279 (805)
..|+|..+.+.|..|++.|+.
T Consensus 144 ~~g~f~~~l~~I~~l~~~G~~ 164 (318)
T TIGR03470 144 REGVFDRAVEAIREAKARGFR 164 (318)
T ss_pred CCCcHHHHHHHHHHHHHCCCc
Confidence 368999999999999999974
No 214
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.48 E-value=66 Score=33.47 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=41.0
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
........++|.+.|-++.-+.... ..++- ...+++++++++|
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~---------------------~~~~~----------------~~~~~i~~v~~~~ 121 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALG---------------------SGNED----------------EVIEEIAAVVEEC 121 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHH---------------------TTHHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccc---------------------cccHH----------------HHHHHHHHHHHHH
Confidence 4456778889999999887653210 00100 0279999999999
Q ss_pred HHcCCEEEEEEecccc
Q 003653 347 HKRGIEVVMDVVFNHT 362 (805)
Q Consensus 347 H~~Gi~VilDvV~NH~ 362 (805)
|+.||+||+..++...
T Consensus 122 ~~~gl~vIlE~~l~~~ 137 (236)
T PF01791_consen 122 HKYGLKVILEPYLRGE 137 (236)
T ss_dssp HTSEEEEEEEECECHH
T ss_pred hcCCcEEEEEEecCch
Confidence 9999999999766543
No 215
>PRK06256 biotin synthase; Validated
Probab=23.48 E-value=96 Score=34.10 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 003653 336 INEFKLLVREAHKRGIEVVMDVVFNH 361 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV~NH 361 (805)
.++..+.++.||+.||+|...+++.+
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 78899999999999999999888876
No 216
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.44 E-value=96 Score=32.98 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=36.9
Q ss_pred hhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 003653 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLV 343 (805)
Q Consensus 264 ~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV 343 (805)
..+.+.|+.++++|+++|+|.+- .... +..+.++ +..++++|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~~~------------------~~~~~~~------------------~~~~~~~~~ 58 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ETDD------------------RLSRLDW------------------SREQRLALV 58 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cccc------------------hhhccCC------------------CHHHHHHHH
Confidence 45677899999999999999532 1100 0111111 167888888
Q ss_pred HHHHHcCCEEE
Q 003653 344 REAHKRGIEVV 354 (805)
Q Consensus 344 ~~aH~~Gi~Vi 354 (805)
+.+.++||+|.
T Consensus 59 ~~l~~~gl~i~ 69 (279)
T TIGR00542 59 NAIIETGVRIP 69 (279)
T ss_pred HHHHHcCCCce
Confidence 99999999985
No 217
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=22.92 E-value=1.3e+02 Score=34.76 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=43.7
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
+.|..|+++||+.|.|-. ..+. +.-.-.+... . +.++..+.|+.++
T Consensus 153 e~l~~L~~~G~~rvsiGv-QS~~----------------------~~vl~~l~R~-~----------~~~~~~~ai~~lr 198 (453)
T PRK13347 153 EMLQALAALGFNRASFGV-QDFD----------------------PQVQKAINRI-Q----------PEEMVARAVELLR 198 (453)
T ss_pred HHHHHHHHcCCCEEEECC-CCCC----------------------HHHHHHhCCC-C----------CHHHHHHHHHHHH
Confidence 578999999999998754 2211 1111122121 1 3788999999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |-+|+.++..+.
T Consensus 199 ~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 199 AAGFESINFDLIYGLPHQ 216 (453)
T ss_pred hcCCCcEEEeEEEeCCCC
Confidence 99997 889999886543
No 218
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=22.82 E-value=90 Score=29.72 Aligned_cols=37 Identities=14% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCceEEeccccccCCCCCCCCCCCCCCCcccccCCcccCChhHHHHHHHHHHHHHhhCcCCC
Q 003653 624 QGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLG 685 (805)
Q Consensus 624 pGiP~Iy~GdE~G~~~~g~~n~y~~d~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~~aL~ 685 (805)
||||+|.-|+.+... ...+.+|++.|-++-+..|.|.
T Consensus 87 PGIPll~pGE~it~~-------------------------~~~~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 87 PGIPLLVPGERITEE-------------------------TEEIIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp TTS-SB-TTEEB-ST-------------------------THHHHHHHHHHHHHHTCSTTS-
T ss_pred CCCcEECCccccccc-------------------------hHHHHHHHHHHHHhCCcCcCCC
Confidence 799999999997542 1678899999888888877765
No 219
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.75 E-value=1.2e+02 Score=31.90 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.4
Q ss_pred hhccchhHHHHcCCceEEEC
Q 003653 265 GVVEKLDHLKDLGINCLELM 284 (805)
Q Consensus 265 g~~~~L~yLk~LGvt~I~L~ 284 (805)
-+.+.|+.++++|+++|+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 36778999999999999985
No 220
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.57 E-value=1.4e+02 Score=30.66 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 003653 336 INEFKLLVREAHKRGIEVVMDV 357 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDv 357 (805)
.+|+.+++++|++.||.+|+++
T Consensus 100 ~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 100 LADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHHHHHHHHCCCeEEEEc
Confidence 4678999999999999999743
No 221
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.52 E-value=1.3e+02 Score=34.17 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=44.2
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|..|+++|||.|.|-. ..++. .-.-.+...+ +.++..+.++.++
T Consensus 116 e~l~~l~~~GvnrislGv-QS~~d----------------------~~L~~l~R~~-----------~~~~~~~ai~~l~ 161 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-QAFQD----------------------ELLALCGRSH-----------RVKDIFAAVDLIH 161 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-ccCCH----------------------HHHHHhCCCC-----------CHHHHHHHHHHHH
Confidence 578999999999998743 33221 1111222211 3788999999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |-+|+.++.-+.
T Consensus 162 ~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 162 QAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HcCCCeEEEEeecCCCCC
Confidence 99999 889999987654
No 222
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=22.40 E-value=84 Score=34.39 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEc
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFD 431 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D 431 (805)
.++..|+.+++++..|++++|+||+-+|
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4578899999999999999999999998
No 223
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.61 E-value=42 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEe
Q 003653 336 INEFKLLVREAHKRGIEVVMDVV 358 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDvV 358 (805)
++++++||+.||++|+++-|-.-
T Consensus 166 ~e~l~eFvd~Ah~hGL~~AlAGs 188 (235)
T COG1891 166 EEELEEFVDLAHEHGLEVALAGS 188 (235)
T ss_pred HHHHHHHHHHHHHcchHHHhccc
Confidence 89999999999999999877544
No 224
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.56 E-value=1.6e+02 Score=32.75 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=43.4
Q ss_pred ccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 003653 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREA 346 (805)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~a 346 (805)
.++|..|+++|||.|.| .|..+.. .-.-.+ .+- .+.++..+.|+.+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~----------------------~~L~~l-gR~----------~~~~~~~~ai~~l 143 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNE----------------------DKLKFL-GRI----------HSQKQIIKAIENA 143 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH----------------------HHHHHc-CCC----------CCHHHHHHHHHHH
Confidence 36789999999999985 4444321 111112 111 1378899999999
Q ss_pred HHcCCE-EEEEEeccccc
Q 003653 347 HKRGIE-VVMDVVFNHTV 363 (805)
Q Consensus 347 H~~Gi~-VilDvV~NH~~ 363 (805)
++.|+. |-+|+.++-.+
T Consensus 144 r~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 144 KKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHcCCCEEEEEeecCCCC
Confidence 999997 66999998654
No 225
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.41 E-value=1.5e+02 Score=33.19 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=43.4
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
++|+.|+++|||.|.|- |..+.. .-.-.+...+ +.++..+.|+.++
T Consensus 104 ~~l~~l~~~G~nrislG-vQS~~~----------------------~~L~~l~R~~-----------~~~~~~~ai~~~~ 149 (370)
T PRK06294 104 SYIRALALTGINRISIG-VQTFDD----------------------PLLKLLGRTH-----------SSSKAIDAVQECS 149 (370)
T ss_pred HHHHHHHHCCCCEEEEc-cccCCH----------------------HHHHHcCCCC-----------CHHHHHHHHHHHH
Confidence 57899999999999764 333321 1111121111 3688889999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|+. |-+|+.++.-+.
T Consensus 150 ~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 150 EHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HcCCCeEEEEeecCCCCC
Confidence 99996 899999887543
No 226
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=21.01 E-value=1.4e+02 Score=34.83 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred cChhhhccchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 003653 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFK 340 (805)
Q Consensus 261 G~~~g~~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k 340 (805)
.-|....+.++.+|+||+++.-+.--+..-. +. |... .++ ...++=.+
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~--------P~--------g~~~----~~n------------~~~~~~Y~ 115 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLF--------PQ--------GDEL----TPN------------QQGIAFYR 115 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeee--------eC--------CCCC----CCC------------HHHHHHHH
Confidence 3577788889999999999998765443210 00 0000 010 12478899
Q ss_pred HHHHHHHHcCCEEEEEEecccc
Q 003653 341 LLVREAHKRGIEVVMDVVFNHT 362 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~NH~ 362 (805)
+||++|+++||++|+.+. |.
T Consensus 116 ~~i~~l~~~gi~p~VtL~--H~ 135 (474)
T PRK09852 116 SVFEECKKYGIEPLVTLC--HF 135 (474)
T ss_pred HHHHHHHHcCCEEEEEee--CC
Confidence 999999999999998664 64
No 227
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=20.84 E-value=89 Score=34.14 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCEEEEEEecc
Q 003653 341 LLVREAHKRGIEVVMDVVFN 360 (805)
Q Consensus 341 ~lV~~aH~~Gi~VilDvV~N 360 (805)
..|++||++|++|+==+.+.
T Consensus 46 ~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEec
Confidence 46899999999998877773
No 228
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.23 E-value=1.7e+02 Score=33.86 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=43.4
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
+.|..|+++|++.|.|.. ..+. +.-.-.+... .+.++..+.++.++
T Consensus 152 e~l~~l~~aG~~risiGv-qS~~----------------------~~~L~~l~r~-----------~~~~~~~~ai~~l~ 197 (453)
T PRK09249 152 EMLDALRELGFNRLSLGV-QDFD----------------------PEVQKAVNRI-----------QPFEFTFALVEAAR 197 (453)
T ss_pred HHHHHHHHcCCCEEEECC-CCCC----------------------HHHHHHhCCC-----------CCHHHHHHHHHHHH
Confidence 578999999999998753 2211 1111112111 13788999999999
Q ss_pred HcCC-EEEEEEecccccC
Q 003653 348 KRGI-EVVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi-~VilDvV~NH~~~ 364 (805)
+.|| .|-+|+.++..+.
T Consensus 198 ~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 198 ELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HcCCCcEEEEEEccCCCC
Confidence 9999 8999999887554
No 229
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.20 E-value=1.5e+02 Score=34.20 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred cchhHHHHcCCceEEECcccccCcccccccCCcCCCCCcCccCCccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 003653 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYKVNFWGYSTINYFSPMISYSSAGIRNCGHDAINEFKLLVREAH 347 (805)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~ygt~~~~~~~~~~~~e~k~lV~~aH 347 (805)
+.|..|+++|++.|.|-. ..+. +.-.-.+.. -. +.++..+.|+.++
T Consensus 152 e~l~~lk~~G~~risiGv-qS~~----------------------~~~l~~l~r-~~----------~~~~~~~ai~~l~ 197 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGV-QDFN----------------------KEVQQAVNR-IQ----------PEEMIFELMNHAR 197 (455)
T ss_pred HHHHHHHHcCCCEEEEcC-CCCC----------------------HHHHHHhCC-CC----------CHHHHHHHHHHHH
Confidence 578999999999998753 2211 111111211 11 3688899999999
Q ss_pred HcCCE-EEEEEecccccC
Q 003653 348 KRGIE-VVMDVVFNHTVE 364 (805)
Q Consensus 348 ~~Gi~-VilDvV~NH~~~ 364 (805)
+.|++ |-+|+.++..+.
T Consensus 198 ~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 198 EAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred hcCCCcEEEeEEeeCCCC
Confidence 99996 779999887543
No 230
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=20.11 E-value=1.1e+02 Score=32.37 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 003653 336 INEFKLLVREAHKRGIEVVMDV 357 (805)
Q Consensus 336 ~~e~k~lV~~aH~~Gi~VilDv 357 (805)
.+++++|++.||+.||.|+..|
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5789999999999999999986
No 231
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=20.08 E-value=92 Score=33.97 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCceeEEEEc
Q 003653 404 NHPVVRQFIVDCLRYWVTEMHVDGFRFD 431 (805)
Q Consensus 404 ~~~~vr~~i~d~l~~W~~e~gvDGfR~D 431 (805)
.++..|+.+++++..+++++|+||+-+|
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 4678899999999999999999999997
Done!