BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003654
(805 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 33/124 (26%)
Query: 109 ISGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMS 168
+ G+L+KW NY GW+PRWFVL G+LSYY ++ KGSK
Sbjct: 9 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYD--------SQDDVCKGSK----------- 49
Query: 169 RNGNSQSRQRIPVGEIHLKVASIRESKSDDKKFS-IYTGTKRVHLRAETREDRVKWMEAL 227
G I + V I+ +D+ + I G + +++A +R +W+ AL
Sbjct: 50 -------------GSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVAL 96
Query: 228 QAVK 231
+ K
Sbjct: 97 GSSK 100
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
Length = 103
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 33/122 (27%)
Query: 111 GILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRN 170
G+L+KW NY GW+PRWFVL G+LSYY ++ KGSK
Sbjct: 3 GVLYKWTNYLTGWQPRWFVLDNGILSYYD--------SQDDVCKGSK------------- 41
Query: 171 GNSQSRQRIPVGEIHLKVASIRESKSDDKKFS-IYTGTKRVHLRAETREDRVKWMEALQA 229
G I V I+ +D+ + I G + + +A +R +W+ AL +
Sbjct: 42 -----------GSIKXAVCEIKVHSADNTRXELIIPGEQHFYXKAVNAAERQRWLVALGS 90
Query: 230 VK 231
K
Sbjct: 91 SK 92
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 32/122 (26%)
Query: 110 SGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSR 169
G+L KW NY GW+ RW VLK LSYYK +ETE G +
Sbjct: 4 CGVLSKWTNYIHGWQDRWVVLKNNALSYYK--------SEDETEYGCR------------ 43
Query: 170 NGNSQSRQRIPVGEIHLKVASIRESKSDDKKFSIYTGTKRVHLRAETREDRVKWMEALQA 229
G I L A I D+ +F I +LRA+ + R +W++A++
Sbjct: 44 ------------GSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQ 91
Query: 230 VK 231
K
Sbjct: 92 HK 93
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 154/379 (40%), Gaps = 54/379 (14%)
Query: 424 DPVEKEKGISLWSMIKD--NIGKDLTKVCLPVYFNEPIS--SLQKCFEE-----LEYSYL 474
DP + S S +K + DL+ + P + PIS + + E LE S++
Sbjct: 4 DPSQYASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFI 63
Query: 475 LDRAY------EWGKQGNSLMRILNIAAFAVSGYAS-------TDGRHCKPFNPLLGETY 521
D Y + + L R+L + + +S S + G KP NP LGE +
Sbjct: 64 NDDNYKEHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELF 123
Query: 522 -----EADYPDKG-LRFFSEKVSHHPMVVACHC--EGRGWKFWADSNLKSKFWGRSIQLD 573
++P+ G SE+VSHHP V A + K + +K+ F +S+ L
Sbjct: 124 VGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLT 182
Query: 574 --PVGALTLEFDDGEIFQWSKVTTSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQS 631
G L+ D E + + I +++ + + G I + C ++F +
Sbjct: 183 VKQFGHTMLDIKD-ESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRG 241
Query: 632 IID--RNPHQVQGVVQDKNGKTVATLFGKWDESMHFMNGDGSGKGKGSELQLLWKRSKPP 689
+N + + K+ K +++++ ++G SG K + K +K
Sbjct: 242 YFSGKKNSFKARIYKDSKDSKDK-------EKALYTISGQWSGSSK------IIKANKKE 288
Query: 690 KYQTRYNFSRFAITLNELSPELKEKLPPTDSRLRPDQR-CLENGEYDMANAEKLRLEQRQ 748
+ + Y+ +R + P L+E+ P + D ++ G++++ K LE+ Q
Sbjct: 289 ESRLFYDAARIPAEHLNVKP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQ 347
Query: 749 RQARTMQER---GWKPRWF 764
R+ R +E W+ RWF
Sbjct: 348 RELRKEEEAKGISWQRRWF 366
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 146/356 (41%), Gaps = 52/356 (14%)
Query: 445 DLTKVCLPVYFNEPIS--SLQKCFEE-----LEYSYLLDRAY------EWGKQGNSLMRI 491
DL+ + P + PIS + + E LE S++ D Y + + L R+
Sbjct: 25 DLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARM 84
Query: 492 LNIAAFAVSGYAS-------TDGRHCKPFNPLLGETY-----EADYPDKG-LRFFSEKVS 538
L + + +S S + G KP NP LGE + ++P+ G SE+VS
Sbjct: 85 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVS 144
Query: 539 HHPMVVACHC--EGRGWKFWADSNLKSKFWGRSIQLD--PVGALTLEFDDGEIFQWSKVT 594
HHP V A + K + +K+ F +S+ L G L+ D E + +
Sbjct: 145 HHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLVTPPP 202
Query: 595 TSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQSIID--RNPHQVQGVVQDKNGKTV 652
I +++ + + G I + C ++F + +N + + K+ K
Sbjct: 203 LHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKDSKDK 262
Query: 653 ATLFGKWDESMHFMNGDGSGKGKGSELQLLWKRSKPPKYQTRYNFSRFAITLNELSPELK 712
+++++ ++G SG K + K +K + + Y+ +R + P L+
Sbjct: 263 -------EKALYTISGQWSGSSK------IIKANKKEESRLFYDAARIPAEHLNVKP-LE 308
Query: 713 EKLPPTDSRLRPDQR-CLENGEYDMANAEKLRLEQRQRQARTMQER---GWKPRWF 764
E+ P + D ++ G++++ K LE+ QR+ R +E W+ RWF
Sbjct: 309 EQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWF 364
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 42/300 (14%)
Query: 488 LMRILNIAAFAVSGYAS-------TDGRHCKPFNPLLGETY-----EADYPDKG-LRFFS 534
L R+L + + +S S + G KP NP LGE + ++P+ G S
Sbjct: 54 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 113
Query: 535 EKVSHHPMVVACHC--EGRGWKFWADSNLKSKFWGRSIQL--DPVGALTLEFDDGEIFQW 590
E+VSHHP V A + K + +K+ F +S+ L G L+ D E +
Sbjct: 114 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 171
Query: 591 SKVTTSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQSIID--RNPHQVQGVVQDKN 648
+ I +++ + + G I + C ++F S +D +N + + K+
Sbjct: 172 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEF---SGVDGKKNSFKARIYKDSKD 228
Query: 649 GKTVATLFGKWDESMHFMNGDGSGKGKGSELQLLWKRSKPPKYQTRYNFSRFAITLNELS 708
K +++++ ++G SG K + K +K + + Y+ +R +
Sbjct: 229 SKDK-------EKALYTISGQWSGSSK------IIKANKKEESRLFYDAARIPAEHLNVK 275
Query: 709 PELKEKLPPTDSRLRPDQR-CLENGEYDMANAEKLRLEQRQRQARTMQER---GWKPRWF 764
P L+E+ P + D ++ G++++ K LE+ QR+ R +E W+ RWF
Sbjct: 276 P-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWF 334
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 35/123 (28%)
Query: 109 ISGILFKWVNYGRGWRPRWFVL--KEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRR 166
+ G L K+ N GW+ R+FVL + G+L Y+ VNE
Sbjct: 10 VYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYF---------VNE---------------- 44
Query: 167 MSRNGNSQSRQRIPVGEIHLKVASIRESKSDDKKFSIYTGT-KRVHLRAETREDRVKWME 225
QSR + P G + L A I S D F++ + ++ LRA ++R W+
Sbjct: 45 -------QSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVS 97
Query: 226 ALQ 228
LQ
Sbjct: 98 RLQ 100
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 35/122 (28%)
Query: 110 SGILFKWVNYG-RGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMS 168
+G LFK + G + W RWFVL + L YYK EK ++G + +
Sbjct: 25 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYK------------DEKEESILGSIPL---- 68
Query: 169 RNGNSQSRQRIPVGEIHLKVASIRESKSDDKKFSI---YTGTKRVHLRAETREDRVKWME 225
+ +VA+++ S + +K + + G + AE+ E++ W++
Sbjct: 69 ---------------LSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQ 113
Query: 226 AL 227
A+
Sbjct: 114 AM 115
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 35/122 (28%)
Query: 110 SGILFKWVNYG-RGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMS 168
+G LFK + G + W RWFVL + L YYK EK ++G + +
Sbjct: 14 AGWLFKQASSGVKQWNKRWFVLVDRCLFYYK------------DEKEESILGSIPL---- 57
Query: 169 RNGNSQSRQRIPVGEIHLKVASIRESKSDDKKFSI---YTGTKRVHLRAETREDRVKWME 225
+ +VA+++ S + +K + + G + AE+ E++ W++
Sbjct: 58 ---------------LSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQ 102
Query: 226 AL 227
A+
Sbjct: 103 AM 104
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 33/110 (30%)
Query: 121 RGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIP 180
R W+ RWFVL++ L Y+ E + K+ G V +R
Sbjct: 77 RNWKKRWFVLRQSKLMYF------------ENDSEEKLKGTVEVR--------------- 109
Query: 181 VGEIHLKVASIRESKSDDKKFSIYTGTKRVHLRAETREDRVKWMEALQAV 230
I ++ + + I + HL AE+ ED +W L V
Sbjct: 110 ------SAKEIIDNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQV 153
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 182 GEIHLKVASIRESKSDDKKFSIYTGTKRVHLRAETREDRVKWMEALQAVKE 232
+++L ++ + D K F + + + H +AE +D V W+ L KE
Sbjct: 51 AKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKE 101
>pdb|2Y7B|A Chain A, Crystal Structure Of The Ph Domain Of Human Actin-Binding
Protein Anillin Anln
Length = 134
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 26/120 (21%)
Query: 122 GWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPV 181
W RW VL +SY+ + EK IG +++ N SRQ P
Sbjct: 22 AWHRRWCVLSGNCISYWTY---------PDDEKRKNPIGRINL------ANCTSRQIEPA 66
Query: 182 GEIH------LKVASIRESKSDDKKFSI-----YTGTKRVHLRAETREDRVKWMEALQAV 230
++ ++R + DD++ + + L A+T+E+R WM+ L V
Sbjct: 67 NREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQV 126
>pdb|3RF2|A Chain A, Crystal Structure Of 30s Ribosomal Protein S8 From Aquifex
Aeolicus
Length = 168
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 224 MEALQAVKEMFPRISNSDYFVPMDNGVAVSTEKLRQRLLDEGVTEDAIQESEDIMRDEFS 283
M A+ + +MF I N+ + D+ + V + KL++R+LD E IQ+ E + +++
Sbjct: 1 MSAVDPIADMFSAIKNA--IMRRDDFLYVPSSKLKERILDVLKKEGFIQDWEALKGEKYE 58
Query: 284 ALHKHLVVLKQR 295
+K + L ++
Sbjct: 59 EEYKKMKELAEK 70
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 11/59 (18%)
Query: 180 PVGEIHLK--VASIRESKSDDKK------FSIYTGTKRVH--LRAETREDRVKWMEALQ 228
P+G IHL+ V + ES S+ +K F I T + VH L+A T ++R +W++A+Q
Sbjct: 59 PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE-VHYFLQAATPKERTEWIKAIQ 116
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 11/59 (18%)
Query: 180 PVGEIHLK--VASIRESKSDDKK------FSIYTGTKRVH--LRAETREDRVKWMEALQ 228
P+G IHL+ V + ES S+ +K F I T + VH L+A T ++R +W++A+Q
Sbjct: 50 PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE-VHYFLQAATPKERTEWIKAIQ 107
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 11/59 (18%)
Query: 180 PVGEIHLK--VASIRESKSDDKK------FSIYTGTKRVH--LRAETREDRVKWMEALQ 228
P+G IHL+ V + ES S+ +K F I T + VH L+A T ++R +W++A+Q
Sbjct: 48 PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE-VHYFLQAATPKERTEWIKAIQ 105
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 121 RGWRPRWFVLKEGVLSYY 138
+ W RWFVLK ++SYY
Sbjct: 22 KNWTERWFVLKPNIISYY 39
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 25/120 (20%)
Query: 111 GILFKWVNYGRGWRPRWFVL-KEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSR 169
G L++ + R W+ WF L +G L YY H +E ++ V+ ++R +
Sbjct: 12 GWLWRQSSILRRWKRNWFALWLDGTLGYY-----HDETAQDEEDR---VVIHFNVRDIKV 63
Query: 170 NGNSQSRQRIPVGEIH--LKVASIRESKSDDKKFSIYTGTKRVHLRAETREDRVKWMEAL 227
Q Q P G L ++RE R+HL AETR+D + W AL
Sbjct: 64 GQECQDVQP-PEGRSRDGLLTVNLREGS-------------RLHLCAETRDDAIAWKTAL 109
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 11/59 (18%)
Query: 180 PVGEIHLK--VASIRESKSDDKK------FSIYTGTKRVH--LRAETREDRVKWMEALQ 228
P+G IHL+ V + ES S+ +K F I T + VH L+A T ++R +W++A+Q
Sbjct: 63 PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE-VHYFLQAATPKERTEWIKAIQ 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,027,226
Number of Sequences: 62578
Number of extensions: 1005003
Number of successful extensions: 2464
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2437
Number of HSP's gapped (non-prelim): 37
length of query: 805
length of database: 14,973,337
effective HSP length: 107
effective length of query: 698
effective length of database: 8,277,491
effective search space: 5777688718
effective search space used: 5777688718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)