Query 003654
Match_columns 805
No_of_seqs 415 out of 2128
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:18:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003654.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1703-1707//hhsearch_pdb/003654hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 1.0 1 1 687.0 30.3 321 429-769 8-371 (438)
2 2rsg_A Collagen type IV alpha- 1.0 1 1 159.9 10.5 93 107-231 1-93 (94)
3 1x1f_A Signal-transducing adap 1.0 1 1 153.6 13.2 100 101-234 12-115 (149)
4 1v88_A Oxysterol binding prote 1.0 1 1 153.0 12.2 96 105-235 6-127 (130)
5 3rcp_A Pleckstrin homology dom 1.0 1 1 153.0 11.2 95 109-235 1-96 (103)
6 2d9x_A Oxysterol binding prote 1.0 1 1 152.4 11.0 100 106-237 7-109 (120)
7 2dhk_A TBC1 domain family memb 1.0 1 1 147.0 14.1 99 105-237 6-109 (119)
8 1btk_A Bruton'S tyrosine kinas 1.0 1 1 145.5 12.6 101 106-236 2-136 (169)
9 4h8s_A DCC-interacting protein 1.0 1 1 145.2 9.7 95 105-234 299-400 (407)
10 2d9v_A Pleckstrin homology dom 1.0 1 1 143.3 15.2 94 106-233 7-115 (130)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=1.00 E-value=1 Score=687.04 Aligned_cols=321 Identities=22% Similarity=0.363 Sum_probs=282.2
Q ss_pred CCCCHHHHHHHHHCC---CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCC-------CCCC------HHHHHH
Q ss_conf 456234998651029---987765555402246773565321012248799997415-------7899------699999
Q 003654 429 EKGISLWSMIKDNIG---KDLTKVCLPVYFNEPISSLQKCFEELEYSYLLDRAYEWG-------KQGN------SLMRIL 492 (805)
Q Consensus 429 ~~~~~lwsilK~~iG---kDLskislPv~~~EP~S~LQr~~ed~ey~~lLd~A~~~~-------~~~d------~~eRm~ 492 (805)
+...++|+++.++|| ||||+|+|||+||||+|+||+++++|+|++||+.|+... +..| |++||+
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~ 87 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARML 87 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 54633799999876312898433520754327804999988766567888655542443322124678344678889999
Q ss_pred HHHHHHHHHCCCCC-------CCCCCCCCCCCCCEEEEEECC-----CC-EEEEEEECCCCCCCCEEEEECC--CEEEEE
Q ss_conf 99998864312468-------998878889887827999369-----99-7999972357896220598428--389999
Q 003654 493 NIAAFAVSGYASTD-------GRHCKPFNPLLGETYEADYPD-----KG-LRFFSEKVSHHPMVVACHCEGR--GWKFWA 557 (805)
Q Consensus 493 ~V~aF~vS~y~~~~-------~r~~KPfNPiLGETfe~~~~d-----~g-~r~iaEQVSHHPPisA~~~e~~--g~~~~g 557 (805)
+|++|+||+|++.. ++++|||||||||||||.|+| .| ++||||||||||||||||++++ ||+++|
T Consensus 88 ~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g 167 (438)
T 1zhx_A 88 AVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQG 167 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 99999985514530234323665556768801234899964766777875799997404799705899993899889998
Q ss_pred EEEEEEEEEEE-EEEEEECEEEEEEECCCCEEEECCCCEEEEEEECCEEEEEECCEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 84224679973-79898613799991599179841221125420033335762404999939853599997633778999
Q 003654 558 DSNLKSKFWGR-SIQLDPVGALTLEFDDGEIFQWSKVTTSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQSIIDRN 636 (805)
Q Consensus 558 ~~~~kskF~G~-si~v~~~G~~~l~f~~gE~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~~tg~~a~l~F~~~~~f~~~ 636 (805)
++.+++||+|+ ||+|.+.|.++|+|. ||+|+|++|+++|+|||+|++|+|++|+|.|+|++||+|+|+|+++|||||+
T Consensus 168 ~~~~kskF~G~~Sv~v~~~G~~~l~l~-~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~~tg~~~~l~F~~kg~f~g~ 246 (438)
T 1zhx_A 168 YNQIKASFTKSLMLTVKQFGHTMLDIK-DESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGK 246 (438)
T ss_dssp EEEEEEEECTTCCEEEEEECCEEEEET-TEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSS
T ss_pred EEEEEEEECCCEEEEEECCEEEEEEEC-CCEEEEECCCEEEEEEEECCEEEECCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 744688886834899981517999999-9389996286899978826526863974999728997799997188874787
Q ss_pred CCEEEEEEEEC------CCCEEEEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCHH
Q ss_conf 82499999934------995899995463331499808999988787645877048998655545653110003678933
Q 003654 637 PHQVQGVVQDK------NGKTVATLFGKWDESMHFMNGDGSGKGKGSELQLLWKRSKPPKYQTRYNFSRFAITLNELSPE 710 (805)
Q Consensus 637 ~~~V~G~V~d~------~g~~~~~i~G~Wd~~i~~~~~~~~~~~k~~~~~~lW~~~~~~~~~~~y~~t~fa~~lne~~~~ 710 (805)
.|.|+|.|++. +|+++|+|.|+|++.|++...... ....++|+....+.. ++ .+.|
T Consensus 247 ~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~-----~~~~~~~~~~~~~~~-------~~-----~v~p- 308 (438)
T 1zhx_A 247 KNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK-----EESRLFYDAARIPAE-------HL-----NVKP- 308 (438)
T ss_dssp SSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG-----GGCEEEEETTTSCCC-------CC-----BCCC-
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEECCCC-----CCCEEEECCCCCCCC-------CC-----CCCC-
T ss_conf 65799999847756678893799999997642999767888-----653697516878776-------65-----4788-
Q ss_pred HHCCCCCCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCEEEECCC
Q ss_conf 223899998878--5757799829967999999999999999998224---9982141476699
Q 003654 711 LKEKLPPTDSRL--RPDQRCLENGEYDMANAEKLRLEQRQRQARTMQE---RGWKPRWFTKDKG 769 (805)
Q Consensus 711 ~~~~l~pTDSR~--RpD~raLe~gd~d~A~~eK~rLEekQR~~Rk~re---~~w~P~~F~~~~~ 769 (805)
.+.++|||||+ |||++||++||++.|++||.+|||+||++||+|+ ..|+|+||++..+
T Consensus 309 -~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 309 -LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp -GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred -HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf -566799632001388999998689999999999999999999999987699831641897775
No 2
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=159.87 Aligned_cols=93 Identities=35% Similarity=0.605 Sum_probs=84.2
Q ss_pred CEEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEEEC
Q ss_conf 40699998112899994205999959908998216986421240001475363000222202589988777764117991
Q 003654 107 HGISGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPVGEIHL 186 (805)
Q Consensus 107 ~~~~G~L~K~~n~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~G~I~L 186 (805)
+.++|||+|+|+..|+|++|||||+++.|+||+++.+.. ..|.|.|+|
T Consensus 1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~--------------------------------~~~~~~i~l 48 (94)
T 2rsg_A 1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETE--------------------------------YGCRGSICL 48 (94)
T ss_dssp CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGG--------------------------------TCCSEEEET
T ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCC--------------------------------CCCEEEEEC
T ss_conf 978899999689989805899999899999998524456--------------------------------552256721
Q ss_pred CCEEEEECCCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 210899528999638999699489999299999999999999999
Q 003654 187 KVASIRESKSDDKKFSIYTGTKRVHLRAETREDRVKWMEALQAVK 231 (805)
Q Consensus 187 ~~~si~~~~~d~~~F~I~t~~kt~~L~A~s~~dr~~Wi~AL~~a~ 231 (805)
..+.+.....+.+.|.|.++.++|+|+|+|++|++.||.||+.|+
T Consensus 49 ~~~~~~~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 49 SKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp TTCEEEECSSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred CEEEEECCCCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 024420476662269999699699998899999999999999646
No 3
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=153.64 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCC
Q ss_conf 77689740699998112899994205999959908998216986421240001475363000222202589988777764
Q 003654 101 MLFADQHGISGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIP 180 (805)
Q Consensus 101 s~pa~~~~~~G~L~K~~n~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p 180 (805)
..++.++.++|||+|++...++|++|||||+++.|+||++..+. .+
T Consensus 12 ~~~~~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~----------------------------------~~ 57 (149)
T 1x1f_A 12 KITALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSI----------------------------------IY 57 (149)
T ss_dssp SCSSSCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCS----------------------------------SC
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCC----------------------------------CC
T ss_conf 57899824799999818999983148999919999999578866----------------------------------66
Q ss_pred CEEEECCCEEEEEC--CC--CCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 11799121089952--89--99638999699489999299999999999999999874
Q 003654 181 VGEIHLKVASIRES--KS--DDKKFSIYTGTKRVHLRAETREDRVKWMEALQAVKEMF 234 (805)
Q Consensus 181 ~G~I~L~~~si~~~--~~--d~~~F~I~t~~kt~~L~A~s~~dr~~Wi~AL~~a~~~~ 234 (805)
.|.|+|..+++... .. ..++|.|.++.++|+|+|+|.+||+.||.||+.+...-
T Consensus 58 ~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~~ 115 (149)
T 1x1f_A 58 VDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS 115 (149)
T ss_dssp SEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred CCEEECCCCEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 7679788866985226887868689997599779998699999999999999997346
No 4
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=152.98 Aligned_cols=96 Identities=27% Similarity=0.357 Sum_probs=80.6
Q ss_pred CCCEEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 97406999981128999942059999599089982169864212400014753630002222025899887777641179
Q 003654 105 DQHGISGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPVGEI 184 (805)
Q Consensus 105 ~~~~~~G~L~K~~n~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~G~I 184 (805)
+.+.++|||+|++ ..|+|++|||||++++|+||+++.+ .+|.|.|
T Consensus 6 ~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~----------------------------------~~p~G~I 50 (130)
T 1v88_A 6 SGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKN----------------------------------GQWVGTV 50 (130)
T ss_dssp SSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSS----------------------------------CCCCEEE
T ss_pred CCEEEEEEEEEEC-CCCCCEEEEEEEECCEEEEECCCCC----------------------------------CCCEEEE
T ss_conf 8667984789858-9888468999997999999878887----------------------------------7723899
Q ss_pred ECCCEEEEECCCC--CCCEEEEECC------------------------EEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9121089952899--9638999699------------------------4899992999999999999999998743
Q 003654 185 HLKVASIRESKSD--DKKFSIYTGT------------------------KRVHLRAETREDRVKWMEALQAVKEMFP 235 (805)
Q Consensus 185 ~L~~~si~~~~~d--~~~F~I~t~~------------------------kt~~L~A~s~~dr~~Wi~AL~~a~~~~~ 235 (805)
.|..+.|.+...+ .++|.|.++. ++|+|+|+|++|++.||.||+.|+..-+
T Consensus 51 ~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 51 LLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp ECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred ECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 84888998778778973999981786543223677644134000268836899988999999999999999984188
No 5
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=1.00 E-value=1 Score=152.96 Aligned_cols=95 Identities=32% Similarity=0.733 Sum_probs=84.6
Q ss_pred EEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 69999811289999420599995990899821698642124000147536300022220258998877776411799121
Q 003654 109 ISGILFKWVNYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPVGEIHLKV 188 (805)
Q Consensus 109 ~~G~L~K~~n~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~G~I~L~~ 188 (805)
++|||+|+++..++|++|||||.++.|+||++..+. ...|+|.|+|..
T Consensus 1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~--------------------------------~~~~~g~i~L~~ 48 (103)
T 3rcp_A 1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDV--------------------------------CKGSKGSIKMAV 48 (103)
T ss_dssp CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC-----------------------------------CCCSCEEEGGG
T ss_pred CCEEEEECCCCCCCEECEEEEEECCEEEEEECCCCC--------------------------------CCCCCCEEEEEE
T ss_conf 954999715888982155999989999999648856--------------------------------678634898145
Q ss_pred EEEEECCCCCCCEEEEEC-CEEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 089952899963899969-94899992999999999999999998743
Q 003654 189 ASIRESKSDDKKFSIYTG-TKRVHLRAETREDRVKWMEALQAVKEMFP 235 (805)
Q Consensus 189 ~si~~~~~d~~~F~I~t~-~kt~~L~A~s~~dr~~Wi~AL~~a~~~~~ 235 (805)
+.|.....+++.|.|.++ .++|+|+|+|.+|++.||.||+.|+....
T Consensus 49 ~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 96 (103)
T 3rcp_A 49 CEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLT 96 (103)
T ss_dssp CEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred EEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 699976899954999937997899999999999999999999997554
No 6
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=152.42 Aligned_cols=100 Identities=29% Similarity=0.569 Sum_probs=86.9
Q ss_pred CCEEEEEEEEECCCCCCCEEEEEEEE--CCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 74069999811289999420599995--9908998216986421240001475363000222202589988777764117
Q 003654 106 QHGISGILFKWVNYGRGWRPRWFVLK--EGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPVGE 183 (805)
Q Consensus 106 ~~~~~G~L~K~~n~~kgWr~RWFVL~--~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~G~ 183 (805)
.+.++|||+|+++..++|++|||||+ ++.|+||+++.+. ..+|+|.
T Consensus 7 ~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~--------------------------------~~~~~g~ 54 (120)
T 2d9x_A 7 GENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSR--------------------------------NQKPRGT 54 (120)
T ss_dssp CCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGS--------------------------------SSCCSEE
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCC--------------------------------CCCCCCE
T ss_conf 97289999964899998537999998999999998557635--------------------------------8876666
Q ss_pred EECCCEEEEECCCCCCCEEEEECC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 991210899528999638999699-489999299999999999999999874312
Q 003654 184 IHLKVASIRESKSDDKKFSIYTGT-KRVHLRAETREDRVKWMEALQAVKEMFPRI 237 (805)
Q Consensus 184 I~L~~~si~~~~~d~~~F~I~t~~-kt~~L~A~s~~dr~~Wi~AL~~a~~~~~~~ 237 (805)
|+|..+.|.....+.+.|.|.++. ++|+|+|+|++|++.||.||+.++......
T Consensus 55 I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 55 LQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp EECTTCCEECCSSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9865489975689998999985899889998799999999999999999986642
No 7
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=147.04 Aligned_cols=99 Identities=26% Similarity=0.470 Sum_probs=84.9
Q ss_pred CCCEEEEEEEEECC--CCCCCEEEEEEEECC--EEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCC
Q ss_conf 97406999981128--999942059999599--08998216986421240001475363000222202589988777764
Q 003654 105 DQHGISGILFKWVN--YGRGWRPRWFVLKEG--VLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIP 180 (805)
Q Consensus 105 ~~~~~~G~L~K~~n--~~kgWr~RWFVL~~g--~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p 180 (805)
..+.++|||+|++. ..++|++|||||+++ .|+||++..+ .+|
T Consensus 6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~----------------------------------~~~ 51 (119)
T 2dhk_A 6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD----------------------------------ANP 51 (119)
T ss_dssp SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTC----------------------------------CSC
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCC----------------------------------CCC
T ss_conf 9985789899347999888824689999799648999899998----------------------------------541
Q ss_pred CEEEECCCEEEEEC-CCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 11799121089952-8999638999699489999299999999999999999874312
Q 003654 181 VGEIHLKVASIRES-KSDDKKFSIYTGTKRVHLRAETREDRVKWMEALQAVKEMFPRI 237 (805)
Q Consensus 181 ~G~I~L~~~si~~~-~~d~~~F~I~t~~kt~~L~A~s~~dr~~Wi~AL~~a~~~~~~~ 237 (805)
+|.|+|..+.+... ......|.|.++.++|+|+|+|++|++.||.||+.++..+...
T Consensus 52 ~g~I~L~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 52 LDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp SEEEEGGGCEEEECTTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCEEECCCCEEEECCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2189888779975578989999998199479998799999999999999999996378
No 8
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=1.00 E-value=1 Score=145.49 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCEEEEEEEEECC-----CCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCC
Q ss_conf 7406999981128-----99994205999959908998216986421240001475363000222202589988777764
Q 003654 106 QHGISGILFKWVN-----YGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIP 180 (805)
Q Consensus 106 ~~~~~G~L~K~~n-----~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p 180 (805)
.++++|||+|++. ..++||+|||||+++.|+||+++.+-. ...+|
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~------------------------------~~~~~ 51 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG------------------------------RRGSK 51 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT------------------------------EEEEE
T ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC------------------------------CCCCE
T ss_conf 647999999866898886668874179999199898980577667------------------------------78732
Q ss_pred CEEEECCCEEE-EEC---CCCC-------------------------CCEEEEECCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 11799121089-952---8999-------------------------638999699489999299999999999999999
Q 003654 181 VGEIHLKVASI-RES---KSDD-------------------------KKFSIYTGTKRVHLRAETREDRVKWMEALQAVK 231 (805)
Q Consensus 181 ~G~I~L~~~si-~~~---~~d~-------------------------~~F~I~t~~kt~~L~A~s~~dr~~Wi~AL~~a~ 231 (805)
+|.|+|..+.+ ... ..+. ..|.|+++.++|+|+|+|++||+.||+||+.++
T Consensus 52 ~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i 131 (169)
T 1btk_A 52 KGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVI 131 (169)
T ss_dssp EEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 06998860688885267778611024444567654333222234566347999689549998499999999999999999
Q ss_pred HHCCC
Q ss_conf 87431
Q 003654 232 EMFPR 236 (805)
Q Consensus 232 ~~~~~ 236 (805)
...+.
T Consensus 132 ~~n~~ 136 (169)
T 1btk_A 132 RYNSD 136 (169)
T ss_dssp TTCSC
T ss_pred HHCCC
T ss_conf 87901
No 9
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=145.24 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=78.8
Q ss_pred CCCEEEEEEEEEC---CCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9740699998112---8999942059999599089982169864212400014753630002222025899887777641
Q 003654 105 DQHGISGILFKWV---NYGRGWRPRWFVLKEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPV 181 (805)
Q Consensus 105 ~~~~~~G~L~K~~---n~~kgWr~RWFVL~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~ 181 (805)
.++.++|||+|++ ..+++|++|||||++|.|+||+.... .+.
T Consensus 299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~-----------------------------------~~~ 343 (407)
T 4h8s_A 299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAV-----------------------------------AGG 343 (407)
T ss_dssp SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCS-----------------------------------SCC
T ss_pred CCCEEECEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCC-----------------------------------CCC
T ss_conf 852365400303127998887437899998998999957887-----------------------------------887
Q ss_pred EEEECCCEEEEECCCCC--CCEEEEECC--EEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 17991210899528999--638999699--489999299999999999999999874
Q 003654 182 GEIHLKVASIRESKSDD--KKFSIYTGT--KRVHLRAETREDRVKWMEALQAVKEMF 234 (805)
Q Consensus 182 G~I~L~~~si~~~~~d~--~~F~I~t~~--kt~~L~A~s~~dr~~Wi~AL~~a~~~~ 234 (805)
+.|.|..|+|+.....+ .+|.|.++. ++|+|+|+|++||..||.||+.++...
T Consensus 344 ~~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 344 LIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp CCBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 078778308987888889835999946999569997199999999999999999986
No 10
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=143.26 Aligned_cols=94 Identities=27% Similarity=0.490 Sum_probs=75.3
Q ss_pred CCEEEEEEEEECCCCCCCEEEEEEE-ECCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 7406999981128999942059999-599089982169864212400014753630002222025899887777641179
Q 003654 106 QHGISGILFKWVNYGRGWRPRWFVL-KEGVLSYYKIHGSHKIIVNEETEKGSKVIGEVSMRRMSRNGNSQSRQRIPVGEI 184 (805)
Q Consensus 106 ~~~~~G~L~K~~n~~kgWr~RWFVL-~~g~LsYYk~~~~~k~~~~~~~~~~~~vi~~~s~~~~~~~~~~~~~~~~p~G~I 184 (805)
.+.++|||+|+++..|+|++||||| +++.|+||+++.+. .+.|.|
T Consensus 7 ~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~----------------------------------~~~g~i 52 (130)
T 2d9v_A 7 GLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQ----------------------------------DEEDRV 52 (130)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTT----------------------------------SEEEEE
T ss_pred CEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCC----------------------------------CCCCEE
T ss_conf 5138899996247557716009999259989997089977----------------------------------757347
Q ss_pred ECCCE--EEEE-----------CCCCCCCEEEEEC-CEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 91210--8995-----------2899963899969-948999929999999999999999987
Q 003654 185 HLKVA--SIRE-----------SKSDDKKFSIYTG-TKRVHLRAETREDRVKWMEALQAVKEM 233 (805)
Q Consensus 185 ~L~~~--si~~-----------~~~d~~~F~I~t~-~kt~~L~A~s~~dr~~Wi~AL~~a~~~ 233 (805)
.|... .|.. .....+.|.|.+. .++|+|+|+|++||+.||.||+.++..
T Consensus 53 ~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 53 VIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp ECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 423431587416523315898778867579999279988999869999999999999999728
Done!