Query         003655
Match_columns 805
No_of_seqs    380 out of 3621
Neff          6.9 
Searched_HMMs 29240
Date          Tue Mar 26 18:36:49 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/003655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1703-1707//hhsearch_pdb/003655hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3s28_A Sucrose synthase 1; gly   1.0       1       1 1532.5  64.5  805    1-805     1-807 (816)
  2 2r60_A Glycosyl transferase, g   1.0       1       1  383.7  38.8  433  273-767     4-459 (499)
  3 3vue_A GBSS-I, granule-bound s   1.0       1       1  361.7  34.9  439  275-768     8-512 (536)
  4 3fro_A GLGA glycogen synthase;   1.0       1       1  357.4  38.7  402  276-767     2-430 (439)
  5 3c48_A Predicted glycosyltrans   1.0       1       1  356.9  36.6  406  274-767    18-425 (438)
  6 1rzu_A Glycogen synthase 1; gl   1.0       1       1  340.6  30.0  430  277-766     1-474 (485)
  7 2qzs_A Glycogen synthase; glyc   1.0       1       1  338.8  33.1  428  277-767     1-476 (485)
  8 3okp_A GDP-mannose-dependent a   1.0       1       1  328.9  34.5  369  275-767     3-379 (394)
  9 2jjm_A Glycosyl transferase, g   1.0       1       1  325.2  35.3  359  297-767    24-385 (394)
 10 2iw1_A Lipopolysaccharide core   1.0       1       1  323.8  17.8  367  277-767     1-371 (374)

No 1  
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00  E-value=1  Score=1532.52  Aligned_cols=805  Identities=84%  Similarity=1.360  Sum_probs=777.9

Q ss_pred             CCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEE
Q ss_conf             912--113333221798999998809999999999882698730125889999855476202357781899986222236
Q 003655            1 MAE--RALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAI   78 (805)
Q Consensus         1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (805)
                      |++  ++|+|++||+|++++++++||+++++||++|+++||++||+|||+++|++++++++.++.+|+||++|++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (816)
T 3s28_A            1 MANAERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAI   80 (816)
T ss_dssp             --------------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTTSCGGGCCCSTHHHHHHTEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEE
T ss_conf             98754311143348888998999759999999999986299720299999999999986220334681999998524104


Q ss_pred             ECCCEEEEEECCCCCEEEEEEEECCCCEEEECCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             70981899985777408899985074104541877776310100378679986035415555567888888999775234
Q 003655           79 VLPPWVALAVRPRPGVWEYIRVNVHALVVEELLVAEYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVE  158 (805)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (805)
                      |.|||||||||||||+|||+|||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||++++|+||||||+
T Consensus        81 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (816)
T 3s28_A           81 VLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVD  160 (816)
T ss_dssp             ECSSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHH
T ss_pred             ECCCEEEEEECCCCCCEEEEEEEHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf             46872799982887425999987300711453699998868985388778887057764554357998898654457488


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             64476321004999873058999864356991323056779978999999999998401999999167899964307665
Q 003655          159 FLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLER  238 (805)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (805)
                      |||||||||||+|+++++|||+||++|+|+|++|||||||+|+.+||++|++|+++|+++|+||||++|+++||+|||||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (816)
T 3s28_A          161 FLNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLER  240 (816)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCB
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             88888776654891555799999997234990641058767999999999999999854999998899999999728888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             86871899999999999952399902086774269984269999234456656767888744230012787888799999
Q 003655          239 GWGDTAERALEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEML  318 (805)
Q Consensus       239 gw~~~~~r~~~~~~~l~~~~~~p~~~~~~~f~~~~p~~~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa  318 (805)
                      ||||||+||+|||++|++++++|||+++|+|++|+||+|+|+++|+||||+|.+++|.||||||++||+|||||||++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela  320 (816)
T 3s28_A          241 GWGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEML  320 (816)
T ss_dssp             CSCSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH
T ss_conf             76876899999999999985199963077773658852489998477665754457888889836509989989999999


Q ss_pred             HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99998899500020698279999888855530145417467299992366677532233454565010888999999999
Q 003655          319 LRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEI  398 (805)
Q Consensus       319 ~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i  398 (805)
                      ++|+++||+|+|+|+|+|+.+++..|+.|+++.+.+.+++|++|+|+|+++.++++++|++++.+|+|+..|+..+...+
T Consensus       321 ~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~i  400 (816)
T 3s28_A          321 QRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVEL  400 (816)
T ss_dssp             HHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99997799620016899689878777765775115548697599996687766543345657788999999999999999


Q ss_pred             HHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             99829995499985899169999999973995999934997556999702331004211110033486997421779991
Q 003655          399 AKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIIT  478 (805)
Q Consensus       399 ~~~~~~~PDIIh~h~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~~~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt  478 (805)
                      ....+++|||||+|++.+++++.++++++++|+|+|.|++...++..++.+|......|++++++.++..+++.||.|||
T Consensus       401 l~~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa  480 (816)
T 3s28_A          401 SKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIIT  480 (816)
T ss_dssp             HHHCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             HHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             99658997399968853899999999975998899981663001222330155677888898888899999984999998


Q ss_pred             CCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf             58887721035445334443455655213331677789958993299557888997278984103761357742061456
Q 003655          479 STFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVEN  558 (805)
Q Consensus       479 ~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~  558 (805)
                      +|+++++.+.+.+++|.++.+|++|++|++++|++++++|+.|||||+|.+.|.|......+....++.++..++++.+.
T Consensus       481 ~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~  560 (816)
T 3s28_A          481 STFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVEN  560 (816)
T ss_dssp             SCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCB
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             88999999998887764420135411221012244677887998897478872863103554320023200012460567


Q ss_pred             HHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             65412555899959999961158889789999999957029984999995889999730799999999999999629999
Q 003655          559 KEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG  638 (805)
Q Consensus       559 r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~  638 (805)
                      ++.+|++.++++++|+++||+++.||++.+++|++++.+.+++++|+|+|+|++..+.+.++.++.+++.++++++++.+
T Consensus       561 r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~  640 (816)
T 3s28_A          561 KEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG  640 (816)
T ss_dssp             TTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred             HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77744457899839999744722179999999999978557996999996887533343356999999999999749987


Q ss_pred             CEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf             59990477776783789999971274899579988886899999983996998475452222101762999899999999
Q 003655          639 QFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQA  718 (805)
Q Consensus       639 ~V~flG~~~~~v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~l  718 (805)
                      +|.|+|++.+.++.+++++++++++|+||+||.+|+||++++||||||+|||+|+.||+.|++.++.+|++++|+|++++
T Consensus       641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~L  720 (816)
T 3s28_A          641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQA  720 (816)
T ss_dssp             BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred             CEEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCEEEECCCCHHHH
T ss_conf             28981675566899999999995690999888755764999999980999999689876999706981899689999999


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999981079999999999999999994899999999999998710236521033775345799987643121000
Q 003655          719 AEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAE  798 (805)
Q Consensus       719 A~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (805)
                      +++|.++++++..|++.+++|+++|++++.++|||+.++++++++|+.|+||++++++++++++||+||||+|+|||||+
T Consensus       721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~  800 (816)
T 3s28_A          721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQ  800 (816)
T ss_dssp             HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999875269999999999999999986899999999999999976754213545388888999999986056775


Q ss_pred             CCCCCCC
Q ss_conf             2776679
Q 003655          799 SVPLAVE  805 (805)
Q Consensus       799 ~~~~~~~  805 (805)
                      ++|+++|
T Consensus       801 ~~~~~~~  807 (816)
T 3s28_A          801 AVPLAQD  807 (816)
T ss_dssp             HSCCCCC
T ss_pred             CCCCCCC
T ss_conf             0887631


No 2  
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00  E-value=1  Score=383.70  Aligned_cols=433  Identities=29%  Similarity=0.473  Sum_probs=315.1

Q ss_pred             CCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             99842699992344566567--6788874423001278788879999999998899500020698279999888855530
Q 003655          273 IPMVFNVVILTPHGYFAQDD--VLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQR  350 (805)
Q Consensus       273 ~p~~~rI~iis~h~~~~~~~--~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~  350 (805)
                      +.++|||++++++++|...+  +.+.+..||.+.++.        +|++.|.++||+|+    |+|..........+...
T Consensus         4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~   71 (499)
T 2r60_A            4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE   71 (499)
T ss_dssp             ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCHHHH
T ss_conf             5445249999657774434423478888799433499--------99999985598489----99578872336511356


Q ss_pred             EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             14541746729999236667753223345456501088899999999999829995499985899169999999973995
Q 003655          351 LEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT  430 (805)
Q Consensus       351 ~e~v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~~~~~PDIIh~h~~~~~lva~llar~~gvp  430 (805)
                      .+......++.++++|.....     +..+...|.++..+...+.+.+... ..+||+||+|++..++++.++++..++|
T Consensus        72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p  145 (499)
T 2r60_A           72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP  145 (499)
T ss_dssp             EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred             HHHCCCCCCEEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             775067898179982577767-----7688999998999999999999853-8998889975786207999988735996


Q ss_pred             EEEEECCCCCCCCC---CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCC--CCCCCCCCCCCCCCC
Q ss_conf             99993499755699---9702331004211110033486997421779991588877210354--453344434556552
Q 003655          431 QCTIAHALEKTKYP---DSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT--VGQYESHTAFTLPGL  505 (805)
Q Consensus       431 ~v~t~H~l~~~k~~---~~~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~--igqy~~~~~f~~p~l  505 (805)
                      +|.+.|+.......   ........+...+++......+..+++.+|.||++|....+...+.  .|             
T Consensus       146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g-------------  212 (499)
T 2r60_A          146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYR-------------  212 (499)
T ss_dssp             EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGT-------------
T ss_pred             EEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC-------------
T ss_conf             8998068400111344147877612455678889999999998468999988889999998641246-------------


Q ss_pred             EEEECCC-CC-CCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHHHHHHC-----CCCCCCCCEEEEEEE
Q ss_conf             1333167-77-8995899329955788899727898410376135774206145665412-----555899959999961
Q 003655          506 YRVVHGI-DV-FDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLC-----VLKDRNKPILFTMAR  578 (805)
Q Consensus       506 ~~~~~gi-~~-~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~r~~lG-----il~~~~k~iIl~iGR  578 (805)
                           .+ +. ...++.+||||+|.+.|.+......+               ...++.+|     +  ++++++|+++||
T Consensus       213 -----~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~---------------~~~r~~~~~~~~~~--~~~~~~i~~vGr  270 (499)
T 2r60_A          213 -----GAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIK---------------AKITKYLERDLGSE--RMELPAIIASSR  270 (499)
T ss_dssp             -----TTCCTTCGGGEEECCCCBCTTTSSSCCCHHHH---------------HHHHHHHHHHSCGG--GTTSCEEEECSC
T ss_pred             -----CCCCCCCCCCEEEECCCCCHHHCCCCCHHHHH---------------HHHHHHHCCCCCCC--CCCCCEEEEEEC
T ss_conf             -----42234678876998799586656864103567---------------89998836433456--888768999606


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCC-EEEEEEECCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHH
Q ss_conf             15888978999999995702998-499999588999----9730799999999999999629999599904777767837
Q 003655          579 LDRVKNLTGLVEWYGKNAKLREL-VNLVVVGGDRRK----ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNG  653 (805)
Q Consensus       579 L~~~Kgi~~LieA~~~l~~~~~~-~~LvIVG~g~~~----~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~  653 (805)
                      +.+.||++.+++|+..+.+..++ +.|+|+|++...    .....++.++.++++++++++++.++|.|+|    .++.+
T Consensus       271 l~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~  346 (499)
T 2r60_A          271 LDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQ  346 (499)
T ss_dssp             CCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC----CCCHH
T ss_conf             85015889999999999873888659999878887532211113201479999999998649986099878----89989


Q ss_pred             HHHHHHHCCC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             8999997127----489957998888689999998399699847545222210176299989999999999999999981
Q 003655          654 ELYRYICDTK----GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKC  729 (805)
Q Consensus       654 el~~~la~aa----difV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l  729 (805)
                      ++..+++. +    |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++   
T Consensus       347 ~~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---  422 (499)
T 2r60_A          347 ELAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---  422 (499)
T ss_dssp             HHHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH---
T ss_pred             HHHHHHHH-CCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHH---
T ss_conf             99999995-57679889978645897968999997699889816887788734786079958999999999999998---


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             07999999999999999999489999999999999871
Q 003655          730 KADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY  767 (805)
Q Consensus       730 ~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~  767 (805)
                       .|++.+++|++++++++.++|+|+.++++++++|+..
T Consensus       423 -~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~  459 (499)
T 2r60_A          423 -ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEI  459 (499)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred             -HCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             -6999999999999999987579999999999999998


No 3  
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00  E-value=1  Score=361.65  Aligned_cols=439  Identities=15%  Similarity=0.177  Sum_probs=288.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             84269999234456656767888744230012787888799999999988995000206982799998888555301454
Q 003655          275 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV  354 (805)
Q Consensus       275 ~~~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~v  354 (805)
                      ..|||+++|+-.+|       .-.+||...++.        .|.++|+++||+|.    |+++.++......-......+
T Consensus         8 ~~MkIl~vs~E~~P-------~~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~   68 (536)
T 3vue_A            8 HHMNVVFVGAEMAP-------WSKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEI   68 (536)
T ss_dssp             CCCEEEEECSCBTT-------TBCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEE
T ss_pred             CCCEEEEEEEECCC-------HHCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCHHHHHHCCCCEEEEE
T ss_conf             97389999872431-------212676999999--------99999997699699----990485022242265168999


Q ss_pred             C---CCCCEEEEEECCCCC------CC-CCCC-C------CCC-C---CCHHHHHHHH--HHHHHHHHHHC---------
Q ss_conf             1---746729999236667------75-3223-3------454-5---6501088899--99999999982---------
Q 003655          355 Y---GTKYSDILRVPFRTE------KG-VVRK-W------ISR-F---EVWPYLETYT--EDVAVEIAKEL---------  402 (805)
Q Consensus       355 ~---~~~~v~I~rvp~~~~------~~-~~~~-~------isr-~---~i~p~l~~f~--~~~~~~i~~~~---------  402 (805)
                      .   ....+++.+.+..+.      ++ +..+ +      +.. .   +-....++|+  ..+..++...+         
T Consensus        69 ~~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~  148 (536)
T 3vue_A           69 KVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFK  148 (536)
T ss_dssp             EETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCC
T ss_pred             EECCCEEEEEEEEEEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             83683378999999978955999647554123346677866688756766417999999999999999973026530110


Q ss_pred             --CCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEECCCCCCCC-CCCHH--------HHHH--CC---CCCCC
Q ss_conf             --9995499985899169999999973-------9959999349975569-99702--------3310--04---21111
Q 003655          403 --QGKPDLIIGNYSDGNIVASLLAHKL-------GVTQCTIAHALEKTKY-PDSDI--------YWKN--LD---DKYHF  459 (805)
Q Consensus       403 --~~~PDIIh~h~~~~~lva~llar~~-------gvp~v~t~H~l~~~k~-~~~~~--------~~~~--~~---~~y~~  459 (805)
                        ...|||+|+|.|.+++++.++....       ++|.|+|+|++..... +....        .+..  ..   ....+
T Consensus       149 ~~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (536)
T 3vue_A          149 GTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVE  228 (536)
T ss_dssp             SCCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCC
T ss_conf             14799879997760489999999986402332025634542157422455553336441896564010333311464100


Q ss_pred             CHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf             00334869974217799915888772103544533444345565521333167778995899329955788899727898
Q 003655          460 SCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKR  539 (805)
Q Consensus       460 ~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~  539 (805)
                      ...+...+.++..||.|+|+|+..++.+....+. +..       +   .....  ..++.+|+||||.+.|.|.++...
T Consensus       229 ~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~-g~~-------l---~~~~~--~~~i~~I~NGiD~~~~~p~~d~~~  295 (536)
T 3vue_A          229 GRKINWMKAGILEADRVLTVSPYYAEELISGIAR-GCE-------L---DNIMR--LTGITGIVNGMDVSEWDPSKDKYI  295 (536)
T ss_dssp             EEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCC-CSS-------S---CCCSC--CCSCEECCCCCCTTTSCTTTCSSS
T ss_pred             CCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCC-CCC-------C---CCCCC--CCCEEEEECCCCHHHCCCCCCCCC
T ss_conf             3304399999985367787687885343126344-522-------0---01254--578189979966421488776210


Q ss_pred             HHHC-CCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
Q ss_conf             4103-761357742061456654125558999599999611588897899999999570299849999958899997307
Q 003655          540 RLKS-FHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDL  618 (805)
Q Consensus       540 rl~~-~~~~i~~~~~~~~~~r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~d~  618 (805)
                      .... ....++....++...++.+|+..+++.|+|+++||+.+.||++.|++|+.++.+  .+.+|+++|.|..      
T Consensus       296 ~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------  367 (536)
T 3vue_A          296 TAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------  367 (536)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEEEEEECCCC------
T ss_conf             01444345556567779999986199879997589999653023784789999997685--4985999954672------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             99999999999999629999599904777767837899999712748995799888868999999839969984754522
Q 003655          619 EEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPA  698 (805)
Q Consensus       619 ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~  698 (805)
                         .....+......+  .+++.+.+    ..+.+++..+++. +|+||+||++|+||++++|||+||+|||+|+.||..
T Consensus       368 ---~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~  437 (536)
T 3vue_A          368 ---KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLV  437 (536)
T ss_dssp             ---HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHH
T ss_pred             ---HHHHHHHHHHHHC--CCCEEEEE----ECCHHHHHHHHHH-HHEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCH
T ss_conf             ---6899999987616--88549997----1468889999986-234253465689888999999869989990799822


Q ss_pred             CCCCCCCEEE----------EECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             2210176299----------989999999999999999981079999999999999999994899999999999998710
Q 003655          699 EIIVNGKSGY----------HIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYG  768 (805)
Q Consensus       699 EiI~dg~~G~----------li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~~  768 (805)
                      |+|.||++||          +++|.|+++++++|.+++. +..++ .|++|.+++.   .++|||+..|++|+++|+..+
T Consensus       438 e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~  512 (536)
T 3vue_A          438 DTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG  512 (536)
T ss_dssp             HHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred             HEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-HCCCH-HHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHH
T ss_conf             202279876324667775158799999999999999998-52959-9999999987---735999999999999999860


No 4  
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00  E-value=1  Score=357.36  Aligned_cols=402  Identities=16%  Similarity=0.162  Sum_probs=298.1

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC------CC-
Q ss_conf             42699992344566567678887442300127878887999999999889950002069827999988885------55-
Q 003655          276 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT------CG-  348 (805)
Q Consensus       276 ~~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~------~~-  348 (805)
                      .|||++++++.+|        +..||.+.++.        +|++.|+++||+|+    ++|...+......      ++ 
T Consensus         2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~   61 (439)
T 3fro_A            2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE   61 (439)
T ss_dssp             CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred             CEEEEEEECCCCC--------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCHHHHHCCCCCCCC
T ss_conf             5289999502177--------66688999999--------99999997798599----9836778823655246301476


Q ss_pred             -CCEEEE-CCCCCEEEEEECCCCCCCCCCCCCCCCCCHH-H-------HHHHHHHHHHHHHHHC--CCCCEEEEECCCCC
Q ss_conf             -301454-1746729999236667753223345456501-0-------8889999999999982--99954999858991
Q 003655          349 -QRLEKV-YGTKYSDILRVPFRTEKGVVRKWISRFEVWP-Y-------LETYTEDVAVEIAKEL--QGKPDLIIGNYSDG  416 (805)
Q Consensus       349 -~~~e~v-~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p-~-------l~~f~~~~~~~i~~~~--~~~PDIIh~h~~~~  416 (805)
                       ...... ....++.+.+++. ..       ..+..++. +       ...|.......+....  ..+||+||+|++..
T Consensus        62 ~~~~~~~~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~  133 (439)
T 3fro_A           62 EVQVKVSYEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHT  133 (439)
T ss_dssp             EEEEEEEEEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGG
T ss_pred             CCCEEEEECCCCCCEEEEECC-HH-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf             531024312578840899353-22-------0521246677630023257899999999999744479981999464034


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCC
Q ss_conf             69999999973995999934997556999702331004211110033486997421779991588877210354453344
Q 003655          417 NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYES  496 (805)
Q Consensus       417 ~lva~llar~~gvp~v~t~H~l~~~k~~~~~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~igqy~~  496 (805)
                      .+++.++++..++|+|++.|+.....++........+.. .........+..+++.+|.++++|....+.   ..+.+  
T Consensus       134 ~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~~--  207 (439)
T 3fro_A          134 VFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGFF--  207 (439)
T ss_dssp             HHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHHH--
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCC-CCCCCEEEHHHHHHHHCCEEEECCHHHHHH---HHHHH--
T ss_conf             345898865269978999653444568567747455100-356663207666554345887268989999---86056--


Q ss_pred             CCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCC----HHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCE
Q ss_conf             434556552133316777899589932995578889972----7898410376135774206145665412555899959
Q 003655          497 HTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT----EEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPI  572 (805)
Q Consensus       497 ~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~----~~~~rl~~~~~~i~~~~~~~~~~r~~lGil~~~~k~i  572 (805)
                                      +....++.+||||+|.+.|.|..    ....               ....++.+|+  +++ ++
T Consensus       208 ----------------~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~~-~~  253 (439)
T 3fro_A          208 ----------------RNFEGKITYVFNGIDCSFWNESYLTGSRDER---------------KKSLLSKFGM--DEG-VT  253 (439)
T ss_dssp             ----------------GGGTTSEEECCCCCCTTTSCGGGSCSCHHHH---------------HHHHHHHHTC--CSC-EE
T ss_pred             ----------------HHCCCCEEECCCCCCCHHCCCCCCCCHHHHH---------------HHHHHHHCCC--CCC-CE
T ss_conf             ----------------5047734534788880430843221104566---------------9999997399--998-47


Q ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf             99996115-8889789999999957029--98499999588999973079999999999999962999959990477776
Q 003655          573 LFTMARLD-RVKNLTGLVEWYGKNAKLR--ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR  649 (805)
Q Consensus       573 Il~iGRL~-~~Kgi~~LieA~~~l~~~~--~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~  649 (805)
                      |+++||+. +.||++.+++|+..+.+..  ++++|+|+|+|+.         ...+.+.+++++++  +.+.|.|    .
T Consensus       254 i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g----~  318 (439)
T 3fro_A          254 FMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITE----M  318 (439)
T ss_dssp             EEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECS----C
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH---------HHHHHHHHHHHHCC--CEEEECC----C
T ss_conf             9997333534366999999999998546678718999807972---------67789999875069--8999728----7


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             78378999997127489957998888689999998399699847545222210176299989999999999999999981
Q 003655          650 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKC  729 (805)
Q Consensus       650 v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l  729 (805)
                      ++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++   
T Consensus       319 ~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll---  393 (439)
T 3fro_A          319 LSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL---  393 (439)
T ss_dssp             CCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHH---
T ss_conf             998899999997-799995898788618999999779976973788743168758-448968899899999999998---


Q ss_pred             HC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             07-999999999999999999489999999999999871
Q 003655          730 KA-DPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY  767 (805)
Q Consensus       730 ~~-dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~  767 (805)
                       . |++.+++|++++++.+ ++|+|+.++++++++|+..
T Consensus       394 -~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~  430 (439)
T 3fro_A          394 -ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGS  430 (439)
T ss_dssp             -HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTC
T ss_pred             -HCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHH
T ss_conf             -319999999999999987-6472999999999999999


No 5  
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00  E-value=1  Score=356.88  Aligned_cols=406  Identities=19%  Similarity=0.283  Sum_probs=301.1

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             98426999923445665676788874423001278788879999999998899500020698279999888855530145
Q 003655          274 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK  353 (805)
Q Consensus       274 p~~~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~  353 (805)
                      ..+|||++++.+.+|.  ...+.+..||.+.++.        +|++.|.++||+|+    ++|.......     .....
T Consensus        18 ~~mmkIl~i~~~~~p~--~~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~   78 (438)
T 3c48_A           18 GSHMRVAMISMHTSPL--QQPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVR   78 (438)
T ss_dssp             -CCCEEEEECTTSCTT--CC-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEE
T ss_pred             CCHHEEEEEEEECCCC--CCCCCCCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-----CCCCC
T ss_conf             0020334577532563--4678788787999999--------99999996699799----9954788777-----54002


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             41746729999236667753223345456501088899999999999829995499985899169999999973995999
Q 003655          354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT  433 (805)
Q Consensus       354 v~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~~~~~PDIIh~h~~~~~lva~llar~~gvp~v~  433 (805)
                      .  ..++.+.+++......     .++...+.++..|.....+....... +||+||+|++..++++.++++..++|++.
T Consensus        79 ~--~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Div~~~~~~~~~~~~~~~~~~~~p~v~  150 (438)
T 3c48_A           79 V--AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRREKV-TYDLIHSHYWLSGQVGWLLRDLWRIPLIH  150 (438)
T ss_dssp             E--ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHHTC-CCSEEEEEHHHHHHHHHHHHHHHTCCEEE
T ss_pred             C--CCCEEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf             5--6874899924787543-----23667789999999999999984168-99989947755789999999974999899


Q ss_pred             EECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             93499755699970233100421111003348699742177999158887721035445334443455655213331677
Q 003655          434 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID  513 (805)
Q Consensus       434 t~H~l~~~k~~~~~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~  513 (805)
                      +.|+..........    .... .........+...++.+|.|+++|....+...+..                   |++
T Consensus       151 ~~h~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------------------g~~  206 (438)
T 3c48_A          151 TAHTLAAVKNSYRD----DSDT-PESEARRICEQQLVDNADVLAVNTQEEMQDLMHHY-------------------DAD  206 (438)
T ss_dssp             ECSSCHHHHSCC--------CC-HHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHH-------------------CCC
T ss_pred             EECCCCCCCCCCCC----CCCC-CCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH-------------------CCC
T ss_conf             94277401111100----2677-31578999999998408999984799999999985-------------------898


Q ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf             78995899329955788899727898410376135774206145665412555899959999961158889789999999
Q 003655          514 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYG  593 (805)
Q Consensus       514 ~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~  593 (805)
                        ..++.+||||+|.+.|.+......                ...++.+|+  +.++++|+++||+.+.||++.+++|+.
T Consensus       207 --~~k~~vi~ngvd~~~~~~~~~~~~----------------~~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~  266 (438)
T 3c48_A          207 --PDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVA  266 (438)
T ss_dssp             --GGGEEECCCCCCTTTSCCC----C----------------HHHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHH
T ss_pred             --HHHEEEECCCCCCCCCCCCCCCHH----------------HHHHHHCCC--CCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf             --202688269766110478662024----------------566886089--989848999743156679899999999


Q ss_pred             HHHCCCC--CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             9570299--84999995889999730799999999999999629999599904777767837899999712748995799
Q 003655          594 KNAKLRE--LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL  671 (805)
Q Consensus       594 ~l~~~~~--~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~  671 (805)
                      .+.+..+  +++|+|+|+....       ....+.+.++++++++.++|.|+|    .++.+++..+++. +|++|.||.
T Consensus       267 ~l~~~~p~~~~~l~i~G~~~~~-------g~~~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~  334 (438)
T 3c48_A          267 ALFDRDPDRNLRVIICGGPSGP-------NATPDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVAVPSF  334 (438)
T ss_dssp             HHHHHCTTCSEEEEEECCBC-------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEEECCS
T ss_pred             HHHHHCCCCCEEEEEEECCCCC-------CCHHHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHH-CCEEEECCC
T ss_conf             9996397766699998188877-------727899999999719878689858----8985889999985-899998740


Q ss_pred             CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             88886899999983996998475452222101762999899999999999999999810799999999999999999948
Q 003655          672 YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKY  751 (805)
Q Consensus       672 ~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~y  751 (805)
                      +|+||++++|||+||+|||+++.||..|++.++.+|+++++.|+++++++|.+++    .|++.+++|++++++++.+ |
T Consensus       335 ~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~-~  409 (438)
T 3c48_A          335 NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHART-F  409 (438)
T ss_dssp             CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH-H
T ss_pred             CCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHH-C
T ss_conf             2687559999987699889627987257750797279879999999999999997----5989999999999999885-7


Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9999999999999871
Q 003655          752 TWKIYSQRLLTLTGVY  767 (805)
Q Consensus       752 tw~~~a~rll~Ly~~~  767 (805)
                      +|+.++++++++|+..
T Consensus       410 s~~~~~~~~~~~~~~~  425 (438)
T 3c48_A          410 SWAATAAQLSSLYNDA  425 (438)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9999999999999998


No 6  
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00  E-value=1  Score=340.62  Aligned_cols=430  Identities=14%  Similarity=0.168  Sum_probs=280.8

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC--------
Q ss_conf             269999234456656767888744230012787888799999999988995000206982799998888555--------
Q 003655          277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCG--------  348 (805)
Q Consensus       277 ~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~--------  348 (805)
                      |||++++...+|.       +..||.+.++.        +|+++|+++||+|+    |+|...+.... .+.        
T Consensus         1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~   60 (485)
T 1rzu_A            1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF   60 (485)
T ss_dssp             CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred             CEEEEEEEEECCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCC-CCCCCCEEEEE
T ss_conf             9699994465156-------56654999999--------99999997698699----99156443344-43565136899


Q ss_pred             -----CCEEEE-CCCCCEEEEEECCCCCCCCCCC-CCCC---CCCHHH-HHHH--HHHHHHHHHHHC--CCCCEEEEECC
Q ss_conf             -----301454-1746729999236667753223-3454---565010-8889--999999999982--99954999858
Q 003655          349 -----QRLEKV-YGTKYSDILRVPFRTEKGVVRK-WISR---FEVWPY-LETY--TEDVAVEIAKEL--QGKPDLIIGNY  413 (805)
Q Consensus       349 -----~~~e~v-~~~~~v~I~rvp~~~~~~~~~~-~isr---~~i~p~-l~~f--~~~~~~~i~~~~--~~~PDIIh~h~  413 (805)
                           ...... ....++.+.+++......  +. ....   ...|+. ...+  .......+.+.+  +.+|||||+|.
T Consensus        61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~  138 (485)
T 1rzu_A           61 TDLLGEKADLLEVQHERLDLLILDAPAYYE--RSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHD  138 (485)
T ss_dssp             SCSSSCCEEEEEEEETTEEEEEEECHHHHC--SSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEH
T ss_pred             EEECCCEEEEEEEEECCCEEEEEECHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             983087478999996695699984867727--776655886566653067999999999999999861579998899646


Q ss_pred             CCCHHHHHHHHHH--CCCCEEEEECCCCCCCC-CCCHHHH-----HHCC-CCCCCCHHHHHHHHHHHCCCEEEECCHHHH
Q ss_conf             9916999999997--39959999349975569-9970233-----1004-211110033486997421779991588877
Q 003655          414 SDGNIVASLLAHK--LGVTQCTIAHALEKTKY-PDSDIYW-----KNLD-DKYHFSCQFTADLIAMNHTDFIITSTFQEI  484 (805)
Q Consensus       414 ~~~~lva~llar~--~gvp~v~t~H~l~~~k~-~~~~~~~-----~~~~-~~y~~~~~~~~e~~al~~AD~IIt~S~~~~  484 (805)
                      +..++++.++++.  .++|+|.+.|+...... .......     ..+. ....+......+..+++.+|.++++|+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~  218 (485)
T 1rzu_A          139 WQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYA  218 (485)
T ss_dssp             HHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHH
T ss_conf             30557899973103589978999667544687887787343998032020001325623599988864677996087589


Q ss_pred             HHCCCC-CCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHHHHHHC
Q ss_conf             210354-4533444345565521333167778995899329955788899727898410376135774206145665412
Q 003655          485 AGSKDT-VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLC  563 (805)
Q Consensus       485 ~~~~~~-igqy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~r~~lG  563 (805)
                      +...+. .|.       .++.+      +.....++.+||||+|.+.|.|....................+....++.+|
T Consensus       219 ~~~~~~~~g~-------~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  285 (485)
T 1rzu_A          219 EEILTAEFGM-------GLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR  285 (485)
T ss_dssp             HHTTSHHHHT-------TCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCC-------CHHHH------HHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9983543576-------65899------9860688169708986020588665110001243244567886999999629


Q ss_pred             CCCCCC-CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE-
Q ss_conf             555899-959999961158889789999999957029984999995889999730799999999999999629999599-
Q 003655          564 VLKDRN-KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFR-  641 (805)
Q Consensus       564 il~~~~-k~iIl~iGRL~~~Kgi~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~-  641 (805)
                      +  +.+ +++|+++||+.+.||++.+++|+..+.+  ++++|+|+|+|+.         ...+.+++++++++  ++|. 
T Consensus       286 ~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~~v~~  350 (485)
T 1rzu_A          286 I--DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV---------ALEGALLAAASRHH--GRVGV  350 (485)
T ss_dssp             C--CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH---------HHHHHHHHHHHHTT--TTEEE
T ss_pred             C--CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH---------HHHHHHHHHHHHCC--CCEEE
T ss_conf             8--88998399997257531287999999999872--6956999968946---------89999999998678--86899


Q ss_pred             EECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CEEEEECC
Q ss_conf             904777767837899999712748995799888868999999839969984754522221017---------62999899
Q 003655          642 WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG---------KSGYHIDP  712 (805)
Q Consensus       642 flG~~~~~v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg---------~~G~li~p  712 (805)
                      |.|    . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++         .+|+++++
T Consensus       351 ~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~  424 (485)
T 1rzu_A          351 AIG----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSP  424 (485)
T ss_dssp             EES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESS
T ss_pred             ECC----C-CHHHHHHHHHC-CCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEECC
T ss_conf             438----9-97999999852-99999784468877799999977997798089983113215653323456776348678


Q ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999999999999999810799999999999999999948999999999999987
Q 003655          713 YHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV  766 (805)
Q Consensus       713 ~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~  766 (805)
                      +|+++++++|.+++. +..|++.+++|++++++   ++|||+.++++++++|+.
T Consensus       425 ~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~  474 (485)
T 1rzu_A          425 VTLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQ  474 (485)
T ss_dssp             CSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHH
T ss_conf             999999999999998-72799999999999998---868969999999999998


No 7  
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00  E-value=1  Score=338.83  Aligned_cols=428  Identities=15%  Similarity=0.160  Sum_probs=281.4

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC----------
Q ss_conf             2699992344566567678887442300127878887999999999889950002069827999988885----------
Q 003655          277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT----------  346 (805)
Q Consensus       277 ~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~----------  346 (805)
                      |||++++...+|.       +..||.+.++.        +|+++|+++||+|+    |+|...+......          
T Consensus         1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~   61 (485)
T 2qzs_A            1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD   61 (485)
T ss_dssp             CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred             CEEEEEEEECCCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCEEEEEEC
T ss_conf             9699996410466-------56773999999--------99999997498789----99447643454345640578741


Q ss_pred             -CCCCEEEE-CCCCCEEEEEECCCC---CCC-CCCCCCCCCCCHHH----HHHHHHHHHHHHHHHCC--CCCEEEEECCC
Q ss_conf             -55301454-174672999923666---775-32233454565010----88899999999999829--99549998589
Q 003655          347 -CGQRLEKV-YGTKYSDILRVPFRT---EKG-VVRKWISRFEVWPY----LETYTEDVAVEIAKELQ--GKPDLIIGNYS  414 (805)
Q Consensus       347 -~~~~~e~v-~~~~~v~I~rvp~~~---~~~-~~~~~isr~~i~p~----l~~f~~~~~~~i~~~~~--~~PDIIh~h~~  414 (805)
                       .+...+.. ....++.+.+++...   ..+ .... .. ..-|+.    ...+... ...+.+.+.  .+|||||+|.+
T Consensus        62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Divh~~~~  138 (485)
T 2qzs_A           62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHD-TN-LFAYTDNVLRFALLGWV-GAEMASGLDPFWRPDVVHAHDW  138 (485)
T ss_dssp             CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBC-TT-SCBCTTHHHHHHHHHHH-HHHHTTTSSTTCCCSEEEEETG
T ss_pred             CCCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCC-CC-CCCCCCHHHHHHHHHHH-HHHHHHHHCCCCCCCEEEEECC
T ss_conf             568717999998789479997082650689876677-54-57787358999999999-9999998456789978996062


Q ss_pred             CCHHHHHHHH-HHCCCCEEEEECCCCCCCC-CCCHHHHHHCCC------CCCCCHHHHHHHHHHHCCCEEEECCHHHHHH
Q ss_conf             9169999999-9739959999349975569-997023310042------1111003348699742177999158887721
Q 003655          415 DGNIVASLLA-HKLGVTQCTIAHALEKTKY-PDSDIYWKNLDD------KYHFSCQFTADLIAMNHTDFIITSTFQEIAG  486 (805)
Q Consensus       415 ~~~lva~lla-r~~gvp~v~t~H~l~~~k~-~~~~~~~~~~~~------~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~  486 (805)
                      ..++++.+++ +..++|+|++.|+...... .........+..      ...+......++.+++.+|.++++|+...+.
T Consensus       139 ~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~  218 (485)
T 2qzs_A          139 HAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE  218 (485)
T ss_dssp             GGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHHH
T ss_conf             13378999754368997899946841357889888876499913213111232465469999987538688568899999


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCC------CC--CCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf             0354453344434556552133316777------89--958993299557888997278984103761357742061456
Q 003655          487 SKDTVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVEN  558 (805)
Q Consensus       487 ~~~~igqy~~~~~f~~p~l~~~~~gi~~------~~--~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~  558 (805)
                      ..+..  |                |++.      ..  .++.+||||+|.+.|.|..............+..........
T Consensus       219 ~~~~~--~----------------~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (485)
T 2qzs_A          219 ITEPQ--F----------------AYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQL  280 (485)
T ss_dssp             TTSHH--H----------------HTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHH
T ss_pred             HHCCC--C----------------CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             85401--4----------------72468999850667866997469876645864442221236630065778849999


Q ss_pred             HHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             65412555899959999961158889789999999957029984999995889999730799999999999999629999
Q 003655          559 KEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG  638 (805)
Q Consensus       559 r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~  638 (805)
                      ++.+|+..++++++|+++||+.+.||++.+++|+..+.+  ++++|+|+|+|+.         ...+.+++++++++  +
T Consensus       281 r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~  347 (485)
T 2qzs_A          281 QIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP---------VLQEGFLAAAAEYP--G  347 (485)
T ss_dssp             HHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH---------HHHHHHHHHHHHST--T
T ss_pred             HHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH---------HHHHHHHHHHHHCC--C
T ss_conf             987198889997399996667543587999999999862--7948999928956---------78999999997579--9


Q ss_pred             CEE-EECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CEEE
Q ss_conf             599-904777767837899999712748995799888868999999839969984754522221017---------6299
Q 003655          639 QFR-WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG---------KSGY  708 (805)
Q Consensus       639 ~V~-flG~~~~~v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg---------~~G~  708 (805)
                      +|. |.|    . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++         .+|+
T Consensus       348 ~v~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~  421 (485)
T 2qzs_A          348 QVGVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGF  421 (485)
T ss_dssp             TEEEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBE
T ss_pred             CEEEECC----C-CHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEE
T ss_conf             3899478----9-97999999975-8899978856787679999997799779878998325521576443444666459


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             98999999999999999998107999999999999999999489999999999999871
Q 003655          709 HIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY  767 (805)
Q Consensus       709 li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~  767 (805)
                      +++++|+++++++|.+++. +..|++.+++|++++++   ++|||+.++++++++|+..
T Consensus       422 l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~  476 (485)
T 2qzs_A          422 VFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYRL  476 (485)
T ss_dssp             EECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
T ss_conf             9778999999999999998-70899999999999876---3289899999999999986


No 8  
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00  E-value=1  Score=328.91  Aligned_cols=369  Identities=18%  Similarity=0.277  Sum_probs=280.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             84269999234456656767888744230012787888799999999988995000206982799998888555301454
Q 003655          275 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV  354 (805)
Q Consensus       275 ~~~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~v  354 (805)
                      ++|||+++++...         |..||.+.++.        .|++.|  +||+|+    +++...+...       ....
T Consensus         3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~   52 (394)
T 3okp_A            3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY   52 (394)
T ss_dssp             -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred             CCCEEEEEECCCC---------CCCCHHHHHHH--------HHHHHH--CCCEEE----EEECCCCCCC-------HHHH
T ss_conf             8866999927668---------86551999999--------999985--697689----9977888642-------4443


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC-EEE
Q ss_conf             1746729999236667753223345456501088899999999999829995499985899169999999973995-999
Q 003655          355 YGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT-QCT  433 (805)
Q Consensus       355 ~~~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~~~~~PDIIh~h~~~~~lva~llar~~gvp-~v~  433 (805)
                      ....++.+.+++.....             +. ..+...+.+.+..   .+||+||+|..........++++.++| ++.
T Consensus        53 ~~~~~~~~~~~~~~~~~-------------~~-~~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~  115 (394)
T 3okp_A           53 DKTLDYEVIRWPRSVML-------------PT-PTTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA  115 (394)
T ss_dssp             HTTCSSEEEEESSSSCC-------------SC-HHHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEECCCCCCC-------------CC-HHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             34566289984565455-------------55-1469999999876---3898899888544889999997518981999


Q ss_pred             EECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             93499755699970233100421111003348699742177999158887721035445334443455655213331677
Q 003655          434 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID  513 (805)
Q Consensus       434 t~H~l~~~k~~~~~~~~~~~~~~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~  513 (805)
                      +.|+...        .|.. ..     .........++.+|.++++|....+...+..                   +  
T Consensus       116 ~~h~~~~--------~~~~-~~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------------------~--  160 (394)
T 3okp_A          116 STHGHEV--------GWSM-LP-----GSRQSLRKIGTEVDVLTYISQYTLRRFKSAF-------------------G--  160 (394)
T ss_dssp             ECCSTHH--------HHTT-SH-----HHHHHHHHHHHHCSEEEESCHHHHHHHHHHH-------------------C--
T ss_pred             EECCCHH--------HHHH-CC-----HHHHHHHHHHHHCCEEEECCHHHHHHHHHHC-------------------C--
T ss_conf             9346423--------3321-22-----0348999999867979976889999999841-------------------8--


Q ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf             78995899329955788899727898410376135774206145665412555899959999961158889789999999
Q 003655          514 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYG  593 (805)
Q Consensus       514 ~~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~  593 (805)
                       ...++.+||||+|.+.|.+......                ...++.+|+  ++++++|+++||+.+.||++.+++++.
T Consensus       161 -~~~~~~vi~ngv~~~~~~~~~~~~~----------------~~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~  221 (394)
T 3okp_A          161 -SHPTFEHLPSGVDVKRFTPATPEDK----------------SATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP  221 (394)
T ss_dssp             -SSSEEEECCCCBCTTTSCCCCHHHH----------------HHHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred             -CCCCEEEECCCCCHHHCCCCCCHHH----------------HHHHHHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             -9998588369858887588772146----------------899986499--857669999764413458879999999


Q ss_pred             HHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC-
Q ss_conf             9570299849999958899997307999999999999996299995999047777678378999997127489957998-
Q 003655          594 KNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY-  672 (805)
Q Consensus       594 ~l~~~~~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~-  672 (805)
                      .+.+..++++|+|+|+|+.           .+.+.+++  .++.++|.|+|    .++.+++..+++. +|++|.||.+ 
T Consensus       222 ~l~~~~~~~~l~i~G~g~~-----------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~~  283 (394)
T 3okp_A          222 QVIAARPDAQLLIVGSGRY-----------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPARTR  283 (394)
T ss_dssp             HHHHHSTTCEEEEECCCTT-----------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCCB
T ss_pred             HHHHHCCCEEEEEECCCHH-----------HHHHHHHH--HCCCCEEEECC----CCCHHHHHHHHHH-CCEEEECCCCC
T ss_conf             9886189869999868647-----------99999987--55457299907----8997899999986-89999457555


Q ss_pred             ------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             ------88868999999839969984754522221017629998999999999999999998107999999999999999
Q 003655          673 ------EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKR  746 (805)
Q Consensus       673 ------E~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~  746 (805)
                            |+||++++|||+||+|||+++.||..|++.++ +|++++++|+++++++|.+++    .|++.+++|+++++++
T Consensus       284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~  358 (394)
T 3okp_A          284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAH  358 (394)
T ss_dssp             GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_conf             66656555673999999759979993899737787468-856728999999999999998----1999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHH
Q ss_conf             999489999999999999871
Q 003655          747 IEEKYTWKIYSQRLLTLTGVY  767 (805)
Q Consensus       747 v~~~ytw~~~a~rll~Ly~~~  767 (805)
                      +.++|+|+.++++++++|+..
T Consensus       359 ~~~~~s~~~~~~~~~~~~~~~  379 (394)
T 3okp_A          359 VEAEWSWEIMGERLTNILQSE  379 (394)
T ss_dssp             HHHHTBHHHHHHHHHHHHHSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHH
T ss_conf             987479999999999999972


No 9  
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00  E-value=1  Score=325.22  Aligned_cols=359  Identities=18%  Similarity=0.256  Sum_probs=267.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             87442300127878887999999999889950002069827999988885553014541746729999236667753223
Q 003655          297 PDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRK  376 (805)
Q Consensus       297 p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~v~~~~~v~I~rvp~~~~~~~~~~  376 (805)
                      |..||.+.++.        +|++.|+++||+|+    ++|...+....          ....++.+..++.....     
T Consensus        24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~-----   76 (394)
T 2jjm_A           24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYS-----   76 (394)
T ss_dssp             C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred             CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCC----------CCCCCEEEEECCCCCCC-----
T ss_conf             89898789999--------99999996898799----99688877620----------03786289852566654-----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHC
Q ss_conf             345456501088899999999999829995499985899169-999999973--99599993499755699970233100
Q 003655          377 WISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNI-VASLLAHKL--GVTQCTIAHALEKTKYPDSDIYWKNL  453 (805)
Q Consensus       377 ~isr~~i~p~l~~f~~~~~~~i~~~~~~~PDIIh~h~~~~~l-va~llar~~--gvp~v~t~H~l~~~k~~~~~~~~~~~  453 (805)
                         .+...++...+...+.+.+..   .+||+||+|+..... .+.++++..  ++|++.+.|+........        
T Consensus        77 ---~~~~~~~~~~~~~~l~~~l~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~--------  142 (394)
T 2jjm_A           77 ---VFQYPPYDLALASKMAEVAQR---ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS--------  142 (394)
T ss_dssp             ----CCSCCHHHHHHHHHHHHHHH---HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT--------
T ss_pred             ---CCCCCCCCHHHHHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC--------
T ss_conf             ---001565207999999999977---699999972433777889998886267877799971575212588--------


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf             42111100334869974217799915888772103544533444345565521333167778995899329955788899
Q 003655          454 DDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP  533 (805)
Q Consensus       454 ~~~y~~~~~~~~e~~al~~AD~IIt~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~~~~~ki~VIpnGVD~~~f~p  533 (805)
                      ...+     .......++.+|.++++|+...+...+..+                    .  ..++.+||||+|.+.|.+
T Consensus       143 ~~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~--------------------~--~~~~~vi~ngv~~~~~~~  195 (394)
T 2jjm_A          143 DPSL-----NNLIRFGIEQSDVVTAVSHSLINETHELVK--------------------P--NKDIQTVYNFIDERVYFK  195 (394)
T ss_dssp             CTTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHHTC--------------------C--SSCEEECCCCCCTTTCCC
T ss_pred             CHHH-----HHHHHHHHHHCCEEEECCHHHHHHHHHHHC--------------------C--CCCEEEECCCCCHHHCCC
T ss_conf             8778-----899999986199899979999999998528--------------------7--656799558756876088


Q ss_pred             CCHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf             72789841037613577420614566541255589995999996115888978999999995702998499999588999
Q 003655          534 YTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK  613 (805)
Q Consensus       534 ~~~~~~rl~~~~~~i~~~~~~~~~~r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~~l~~~~~~~~LvIVG~g~~~  613 (805)
                      .....                   .++.+|+  ++++++|+++||+.+.||++.+++|+..+.+. ++++|+++|+|+. 
T Consensus       196 ~~~~~-------------------~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~-  252 (394)
T 2jjm_A          196 RDMTQ-------------------LKKEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE-  252 (394)
T ss_dssp             CCCHH-------------------HHHHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred             CCHHH-------------------HHHHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCHH-
T ss_conf             63488-------------------9987199--98880899950466535889999999999853-7978999889657-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECC
Q ss_conf             97307999999999999996299995999047777678378999997127489957998888689999998399699847
Q 003655          614 ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC  693 (805)
Q Consensus       614 ~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~E~fGltilEAMA~GlPVIaT~  693 (805)
                                .+++.++++++++.++|.|+|+      .+++..+++. +|++|+||.+|+||++++|||+||+|||+++
T Consensus       253 ----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~~  315 (394)
T 2jjm_A          253 ----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGTR  315 (394)
T ss_dssp             ----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred             ----------HHHHHHHHHHCCCCCEEEEECC------HHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf             ----------9999999997399875999276------6659999986-7899965666787268999996499889815


Q ss_pred             CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             54522221017629998999999999999999998107999999999999999999489999999999999871
Q 003655          694 KGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY  767 (805)
Q Consensus       694 ~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~ytw~~~a~rll~Ly~~~  767 (805)
                      .||..|++.++.+|++++++|+++++++|.+++    .|++.+++|++++++++.++|+|+.++++++++|+..
T Consensus       316 ~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  385 (394)
T 2jjm_A          316 VGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDV  385 (394)
T ss_dssp             CTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             898077763488539968999999999999997----4979999999999999987379999999999999999


No 10 
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00  E-value=1  Score=323.85  Aligned_cols=367  Identities=16%  Similarity=0.217  Sum_probs=261.5

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECC
Q ss_conf             26999923445665676788874423001278788879999999998899500020698279999888855530145417
Q 003655          277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG  356 (805)
Q Consensus       277 ~rI~iis~h~~~~~~~~lg~p~tGG~~~yild~araL~~eLa~~L~~~Gh~V~~~I~IiTr~~p~~~g~~~~~~~e~v~~  356 (805)
                      |||++++++..         | .||.+.++.        ++++.|+++||+|+    +++.......             
T Consensus         1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~-------------   45 (374)
T 2iw1_A            1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC-------------   45 (374)
T ss_dssp             -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred             CEEEEEEEECC---------C-CCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-------------
T ss_conf             96999972158---------8-761635999--------99999996798489----9964898878-------------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             46729999236667753223345456501088899999999999829995499985899169999999973995999934
Q 003655          357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAH  436 (805)
Q Consensus       357 ~~~v~I~rvp~~~~~~~~~~~isr~~i~p~l~~f~~~~~~~i~~~~~~~PDIIh~h~~~~~lva~llar~~gvp~v~t~H  436 (805)
                      ..++.+.++|......           ......+...+.+.+..   .+||+||+|.+..+..+...+...+++.+.+.|
T Consensus        46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (374)
T 2iw1_A           46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK  111 (374)
T ss_dssp             CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCC-----------HHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCEEEECCCCCCCEEEEECC
T ss_conf             8774799971686443-----------01677899999999850---699889996677885213001565421333035


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH--HCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf             9975569997023310042111100334869974--21779991588877210354453344434556552133316777
Q 003655          437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM--NHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDV  514 (805)
Q Consensus       437 ~l~~~k~~~~~~~~~~~~~~y~~~~~~~~e~~al--~~AD~IIt~S~~~~~~~~~~igqy~~~~~f~~p~l~~~~~gi~~  514 (805)
                      +..           ......+.+..  ..+...+  +.+|.++++|+...+...+..                   |++ 
T Consensus       112 ~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------------------~~~-  158 (374)
T 2iw1_A          112 GFL-----------YRLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQKHY-------------------QTE-  158 (374)
T ss_dssp             CHH-----------HHTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHHHH-------------------CCC-
T ss_pred             CCH-----------HHHCHHHHHHH--HHHHHHHHCCCCCEEEECCHHHHHHHHHHH-------------------CCC-
T ss_conf             621-----------21047789999--999998642677579986989999999971-------------------897-


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             89958993299557888997278984103761357742061456654125558999599999611588897899999999
Q 003655          515 FDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGK  594 (805)
Q Consensus       515 ~~~ki~VIpnGVD~~~f~p~~~~~~rl~~~~~~i~~~~~~~~~~r~~lGil~~~~k~iIl~iGRL~~~Kgi~~LieA~~~  594 (805)
                       ..++.++|||+|.+.|.+......+               ...++.+|+  ++++++++++||+.+.||++.+++++..
T Consensus       159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~  220 (374)
T 2iw1_A          159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS  220 (374)
T ss_dssp             -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred             -HHHEEEECCCCCHHHCCCCCCHHHH---------------HHHHHHHCC--CCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf             -1106885698587761764423579---------------999997289--9787299996464101388999999998


Q ss_pred             HHCC-CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             5702-998499999588999973079999999999999962999959990477776783789999971274899579988
Q 003655          595 NAKL-RELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYE  673 (805)
Q Consensus       595 l~~~-~~~~~LvIVG~g~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadifV~PS~~E  673 (805)
                      +.+. .++++|+++|+|+.            +++.++++++++.++|.|+|+      .+++..+++. +|++|+||.+|
T Consensus       221 l~~~~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~e  281 (374)
T 2iw1_A          221 LPESLRHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQE  281 (374)
T ss_dssp             SCHHHHHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSCC
T ss_pred             HHHCCCCCEEEEEECCCCH------------HHHHHHHHHCCCCCCEEECCC------CCCHHHHHHH-CCEEEECCCCC
T ss_conf             6760488669999708987------------999999997398773797788------4038999984-68898354247


Q ss_pred             CCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88689999998399699847545222210176299989-99999999999999998107999999999999999999489
Q 003655          674 AFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHID-PYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYT  752 (805)
Q Consensus       674 ~fGltilEAMA~GlPVIaT~~GG~~EiI~dg~~G~li~-p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~~~yt  752 (805)
                      +||++++|||+||+|||+++.||..|++.++.+|++++ ++|+++++++|.+++    +|++.+++|++++++.+ ++|+
T Consensus       282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~~  356 (374)
T 2iw1_A          282 AAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQD  356 (374)
T ss_dssp             SSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHSC
T ss_pred             CCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH-HHHH
T ss_conf             755699999977998898269980444306983199679999899999999997----19499999999999999-8753


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999871
Q 003655          753 WKIYSQRLLTLTGVY  767 (805)
Q Consensus       753 w~~~a~rll~Ly~~~  767 (805)
                      |...++++.++++.+
T Consensus       357 ~~~~~~~~~~~l~~~  371 (374)
T 2iw1_A          357 LYSLPEKAADIITGG  371 (374)
T ss_dssp             CSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             899999999999986


Done!