Query 003659
Match_columns 805
No_of_seqs 508 out of 3601
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 18:24:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003659.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1708-1712//hhsearch_pdb/003659hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 416.8 24.3 260 461-739 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 414.1 19.2 259 461-738 13-289 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 408.8 20.6 254 463-735 28-303 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 399.8 21.9 259 461-737 36-299 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 398.9 17.6 268 455-740 58-349 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 394.1 18.5 251 461-732 24-277 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 391.5 21.5 250 460-731 150-400 (423)
8 3hmm_A TGF-beta receptor type- 1.0 1 1 390.9 13.9 269 461-739 3-298 (303)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 390.7 19.9 260 460-743 57-321 (336)
10 4fih_A Serine/threonine-protei 1.0 1 1 390.4 19.6 249 461-731 74-323 (346)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=416.79 Aligned_cols=260 Identities=28% Similarity=0.446 Sum_probs=221.3
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 19864235754084699999936------991999998388990109999999999860899736789999814991999
Q 003659 461 NNFDESWVIGIGGFGKVYKGELN------DGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMIL 534 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 534 (805)
++|...++||+|+||.||+|+++ +++.||||++...+....++|.+|+++|++++|||||+++|+|.+...+++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCE
Q ss_conf 997556875000112799-------------9999987899999999999999750699976853068894786899939
Q 003659 535 IYEYMENGTLKGHLYGSG-------------LPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMA 601 (805)
Q Consensus 535 V~E~~~~gsL~~~l~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ 601 (805)
|||||++|+|.++++... ..+++|.+++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCE
T ss_conf 99827999399999860754100122112457889999999999999999999840---884226666764898899968
Q ss_pred EEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9943178777999987520002224565459432312899960358999999999993-899999998122210999999
Q 003659 602 KVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLC-ARPVIDPTLPREMVNLAEWAM 680 (805)
Q Consensus 602 ki~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~ 680 (805)
||+|||+++.....+.........||+.|||||++.+..++.++|||||||+||||+| |+.||......+....+
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i---- 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI---- 273 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH----
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH----
T ss_conf 9766603336567875300476455656658265447999966300105789999982899999998999999999----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98302986301482124999956999999999861000799999978999999999986
Q 003659 681 KWQNKGQLDQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQL 739 (805)
Q Consensus 681 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~~~ 739 (805)
..+. ....+..++..+.+++.+||+.+|.+||+|.||+++|+.+.+.
T Consensus 274 ---~~g~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 ---TQGR---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ---HHTC---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---HCCC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ---8089---------8998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=414.13 Aligned_cols=259 Identities=27% Similarity=0.420 Sum_probs=219.4
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 19864235754084699999936------991999998388990109999999999860899736789999814991999
Q 003659 461 NNFDESWVIGIGGFGKVYKGELN------DGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMIL 534 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 534 (805)
++|...+.||+|+||.||+|++. ++..||||++...+....++|.+|+++|++++|||||+++|+|.+++.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCEEE
Q ss_conf 99755687500011279-----------9999998789999999999999975069997685306889478689993999
Q 003659 535 IYEYMENGTLKGHLYGS-----------GLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKV 603 (805)
Q Consensus 535 V~E~~~~gsL~~~l~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki 603 (805)
|||||++|+|.++|+.. ....++|.+++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEE
T ss_conf 998589996899998608642111235777889999999999999999999975---99046765776389879986898
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 43178777999987520002224565459432312899960358999999999993-89999999812221099999998
Q 003659 604 ADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLC-ARPVIDPTLPREMVNLAEWAMKW 682 (805)
Q Consensus 604 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~~~ 682 (805)
+|||+++.....+.........||+.|||||++.++.++.++|||||||+||||+| |+.||......+....
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~------- 242 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIEC------- 242 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH-------
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-------
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899999999-------
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 30298630148212499995699999999986100079999997899999999998
Q 003659 683 QNKGQLDQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQ 738 (805)
Q Consensus 683 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~~ 738 (805)
...+.. ...+..++..+.+++.+||+.+|.+||++.+|++.|+.+.+
T Consensus 243 i~~~~~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 243 ITQGRV---------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp HHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 980898---------89974143999999999768796689299999999987776
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=408.79 Aligned_cols=254 Identities=23% Similarity=0.351 Sum_probs=212.8
Q ss_pred CCCCCEEEEECCEEEEEEEEC------CCCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 864235754084699999936------99199999838899-01099999999998608997367899998149919999
Q 003659 463 FDESWVIGIGGFGKVYKGELN------DGTKVAVKRGNPRS-QQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILI 535 (805)
Q Consensus 463 f~~~~~LG~G~fg~Vy~~~~~------~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 535 (805)
+...+.||+|+||.||+|.+. +++.||||++.... ....++|.+|+.++++++|||||+++|+|.+.+.+++|
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEE
T ss_conf 85866913588848999998577658888699999988014968999999999999858998987736499889988999
Q ss_pred EEECCCCCCCCCCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCE
Q ss_conf 97556875000112799--------------9999987899999999999999750699976853068894786899939
Q 003659 536 YEYMENGTLKGHLYGSG--------------LPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMA 601 (805)
Q Consensus 536 ~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ 601 (805)
||||++|+|.++|.... ...++|.++++|+.|+|+||+|||+ ++|+||||||+|||+++++.+
T Consensus 108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~~ 184 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLNV 184 (308)
T ss_dssp EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCE
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCCE
T ss_conf 98189994999998627654333322111124689999999999999999999986---899778736230688799978
Q ss_pred EEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9943178777999987520002224565459432312899960358999999999993-899999998122210999999
Q 003659 602 KVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLC-ARPVIDPTLPREMVNLAEWAM 680 (805)
Q Consensus 602 ki~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~l~~~~~ 680 (805)
||+|||+++.....+.........||+.|||||++.++.++.++|||||||+||||+| |+.||......+....
T Consensus 185 Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~----- 259 (308)
T 4gt4_A 185 KISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEM----- 259 (308)
T ss_dssp EECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHH-----
T ss_pred EECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-----
T ss_conf 988760202336777404734512577656989982799996300015799999999689999999899999999-----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9830298630148212499995699999999986100079999997899999999
Q 003659 681 KWQNKGQLDQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEY 735 (805)
Q Consensus 681 ~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~ 735 (805)
...+.. ...+.+++..+.+++.+||+.+|.+||+|.||++.|+.
T Consensus 260 --i~~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 260 --IRNRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp --HHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred --HHCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf --981998---------99962036999999999758796579299999999985
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=399.84 Aligned_cols=259 Identities=28% Similarity=0.488 Sum_probs=211.5
Q ss_pred CCCCCCCEEEEECCEEEEEEEECCCCEEEEEECCCC--CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 198642357540846999999369919999983889--901099999999998608997367899998149919999975
Q 003659 461 NNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPR--SQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEY 538 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~ 538 (805)
+++...+.||+|+||.||+|++++ .||||.++.. +.+..+.|.+|++++++++|||||+++|+|.+ +.+++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEEC
T ss_conf 994984498208886899999899--68999997268999999999999999985899887469999978-958999974
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 56875000112799999998789999999999999975069997685306889478689993999431787779999875
Q 003659 539 MENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQT 618 (805)
Q Consensus 539 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DFGla~~~~~~~~~ 618 (805)
|++|+|.++|+... .+++|.+++.|+.|+|.||+|||+ ++|+||||||+|||+++++.+||+|||+|+........
T Consensus 113 ~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 113 CEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 89987889875248-999999999999999999999977---99527855789978889990899441575424667764
Q ss_pred CEEECCCCCCCCCCHHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 20002224565459432312---899960358999999999993899999998122210999999983029863014821
Q 003659 619 HVSTAVKGSFGYLDPEYFRR---QQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLDQIIDPT 695 (805)
Q Consensus 619 ~~~~~~~gt~~y~aPE~~~~---~~~s~ksDV~SlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 695 (805)
.......||+.|||||++.+ +.++.++|||||||+||||+||+.||.......... .....+ ...|.
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~------~~~~~~----~~~p~ 258 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII------FMVGRG----YASPD 258 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH------HHHHTT----CCCCC
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH------HHHHCC----CCCCC
T ss_conf 03156446877249878614689987868775728999999997889989999699999------999658----88887
Q ss_pred CCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 249999569999999998610007999999789999999999
Q 003659 696 LAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYAL 737 (805)
Q Consensus 696 l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~ 737 (805)
+ ...+.+++..+.+++.+||+.+|.+||+|.||++.|+.+.
T Consensus 259 ~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 259 L-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp S-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred C-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 2-0035445699999999975779768909899999999974
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=398.87 Aligned_cols=268 Identities=22% Similarity=0.339 Sum_probs=217.7
Q ss_pred HHHHHHCCCCCCCEEEEECCEEEEEEEECC------CCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCC-CCEEEEEEEE
Q ss_conf 799984198642357540846999999369------9199999838899-0109999999999860899-7367899998
Q 003659 455 AVQEATNNFDESWVIGIGGFGKVYKGELND------GTKVAVKRGNPRS-QQGLAEFQTEIEMLSQFRH-RHLVSLIGYC 526 (805)
Q Consensus 455 ~l~~at~~f~~~~~LG~G~fg~Vy~~~~~~------g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H-~niv~l~g~~ 526 (805)
+.+...++|...+.||+|+||.||+|.+.. ++.||||++.... ....+.|.+|+++|.+++| ||||+++|+|
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~ 137 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 137 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 51705799598209821789599999986888544775999999762358689999999999999757998487788999
Q ss_pred CC-CCEEEEEEEECCCCCCCCCCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 14-991999997556875000112799--------------999998789999999999999975069997685306889
Q 003659 527 DE-KNEMILIYEYMENGTLKGHLYGSG--------------LPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSA 591 (805)
Q Consensus 527 ~~-~~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~ 591 (805)
.+ +..+++|||||++|+|.++|+... ...++|.+++.++.|+|+||+|||+ ++|+||||||+
T Consensus 138 ~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~ 214 (353)
T 4ase_A 138 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAAR 214 (353)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred EECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCCC
T ss_conf 946977999998389897999997435666543334101103568999999999999999876762---78435746721
Q ss_pred CEEECCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHH
Q ss_conf 47868999399943178777999987520002224565459432312899960358999999999993-89999999812
Q 003659 592 NILLDENFMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLC-ARPVIDPTLPR 670 (805)
Q Consensus 592 NIll~~~~~~ki~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~ellt-G~~p~~~~~~~ 670 (805)
|||+++++.+||+|||+|+...............||+.|||||++.++.++.++|||||||+||||+| |+.||......
T Consensus 215 NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~ 294 (353)
T 4ase_A 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID 294 (353)
T ss_dssp GEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred CEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 13057999789796543222456887203254014666569899946999975537406899999981899999998989
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2210999999983029863014821249999569999999998610007999999789999999999866
Q 003659 671 EMVNLAEWAMKWQNKGQLDQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQ 740 (805)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~~~~ 740 (805)
+.. .....++. ....+..++..+.+++.+||+.+|.+||++.+++++|+.+++..
T Consensus 295 ~~~------~~~i~~g~---------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 295 EEF------CRRLKEGT---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp HHH------HHHHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHH------HHHHHCCC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999------99997389---------88888657899999999976869667939999999999999875
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=394.13 Aligned_cols=251 Identities=23% Similarity=0.378 Sum_probs=212.6
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC-CCCEEEEEECCCC--CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 19864235754084699999936-9919999983889--90109999999999860899736789999814991999997
Q 003659 461 NNFDESWVIGIGGFGKVYKGELN-DGTKVAVKRGNPR--SQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYE 537 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 537 (805)
++|...+.||+|+||.||+|+.. +++.||||++... .....+.+.+|++++++++|||||++++++.+.+.+++|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 55687500011279999999878999999999999997506999768530688947868999399943178777999987
Q 003659 538 YMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQ 617 (805)
Q Consensus 538 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DFGla~~~~~~~~ 617 (805)
||++|+|.++|.......+++.+++.++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.... .
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~--~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS--T 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH--H
T ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECC--C
T ss_conf 8899839999997389999789999999999999999998---9915135978997987899989764652144068--8
Q ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 52000222456545943231289996035899999999999389999999812221099999998302986301482124
Q 003659 618 THVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLDQIIDPTLA 697 (805)
Q Consensus 618 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~ 697 (805)
....+..+||+.|||||++.+..++.++|||||||+||||+||++||......+... .... +.. +
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~------~i~~-~~~-----~--- 243 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVL------KIIS-GSF-----P--- 243 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH------HHHH-TCC-----C---
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH------HHHC-CCC-----C---
T ss_conf 541014578836039999879998959999999999999997879989969999999------9980-899-----9---
Q ss_pred CCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHH
Q ss_conf 99995699999999986100079999997899999
Q 003659 698 GKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWN 732 (805)
Q Consensus 698 ~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~ 732 (805)
..+...+..+.+++.+||+.||.+||++.|++++
T Consensus 244 -~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 244 -PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp -CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf -9975579999999999855896679089999639
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.51 Aligned_cols=250 Identities=23% Similarity=0.374 Sum_probs=210.8
Q ss_pred HCCCCCCCEEEEECCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 419864235754084699999936-9919999983889901099999999998608997367899998149919999975
Q 003659 460 TNNFDESWVIGIGGFGKVYKGELN-DGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEY 538 (805)
Q Consensus 460 t~~f~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~ 538 (805)
.+.|+..+.||+|+||.||+|+.+ +|+.||||++........+.+.+|+++|+.++|||||++++++.+.+.++|||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 56875000112799999998789999999999999975069997685306889478689993999431787779999875
Q 003659 539 MENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQT 618 (805)
Q Consensus 539 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DFGla~~~~~~~~~ 618 (805)
|++|+|.+++... .+++.++..++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.... ..
T Consensus 230 ~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~--~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK--EV 301 (423)
T ss_dssp CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCS--SC
T ss_pred CCCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCC--CC
T ss_conf 8998289887616---98999999999999999999998---8904465787778985899989803726547778--87
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 20002224565459432312899960358999999999993899999998122210999999983029863014821249
Q 003659 619 HVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLDQIIDPTLAG 698 (805)
Q Consensus 619 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~ 698 (805)
......+||+.|||||++.+..|+.++|||||||++|||++|++||....+.+....+ ..+ ..+.+
T Consensus 302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-------~~~-----~~~~~-- 367 (423)
T 4fie_A 302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-------RDN-----LPPRL-- 367 (423)
T ss_dssp CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-------HHS-----CCCCC--
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-------HCC-----CCCCC--
T ss_conf 6434666474727999977999996899999999999999787998986999999999-------727-----99887--
Q ss_pred CCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHH
Q ss_conf 999569999999998610007999999789999
Q 003659 699 KIRPDSLRKFGETAEKCLADFGVDRPSMGDVLW 731 (805)
Q Consensus 699 ~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~ 731 (805)
......+..+.+++.+||+.||.+||++.|+++
T Consensus 368 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 368 KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 650129999999999986789568909999960
No 8
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=390.94 Aligned_cols=269 Identities=24% Similarity=0.345 Sum_probs=204.0
Q ss_pred CCCCCCCEEEEECCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC----EEEEEE
Q ss_conf 1986423575408469999993699199999838899010999999999986089973678999981499----199999
Q 003659 461 NNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKN----EMILIY 536 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lV~ 536 (805)
+++...+.||+|+||.||+|+++ |+.||||++...... ...+..|+..+.+++||||++++|+|.+.+ .++|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-989999998831336-6999999999860899988709999984688723788775
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCEEEECCCCCCEEECCCCCEEEEECCCCCC
Q ss_conf 755687500011279999999878999999999999997506-----999768530688947868999399943178777
Q 003659 537 EYMENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTG-----YAKAVIHRDVKSANILLDENFMAKVADFGLSKT 611 (805)
Q Consensus 537 E~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~iiH~Dikp~NIll~~~~~~ki~DFGla~~ 611 (805)
|||++|+|.++|+.. +++|..+++++.|+|+||+|||+. ..++|+||||||+|||++.++.+||+|||+++.
T Consensus 81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 178999689999757---99989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCC--CEEECCCCCCCCCCHHHHCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----H-----HH
Q ss_conf 9999875--200022245654594323128------99960358999999999993899999998122----2-----10
Q 003659 612 GPEIDQT--HVSTAVKGSFGYLDPEYFRRQ------QLTEKSDVYSFGVVLFEVLCARPVIDPTLPRE----M-----VN 674 (805)
Q Consensus 612 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~s~ksDV~SlGvil~elltG~~p~~~~~~~~----~-----~~ 674 (805)
....... .......||+.|||||++.+. .++.++|||||||+||||+||++|+......+ . ..
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999830298630148212499-9956999999999861000799999978999999999986
Q 003659 675 LAEWAMKWQNKGQLDQIIDPTLAGK-IRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQL 739 (805)
Q Consensus 675 l~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~~~ 739 (805)
..... ..... +..+|.+... ...+++..+.+++.+||+.+|.+||||.||++.|+++.+.
T Consensus 238 ~~~~~-~~~~~----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 238 VEEMR-KVVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHH-HHHTT----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999-98750----257998876556658999999999997605975795999999999988987
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=390.72 Aligned_cols=260 Identities=21% Similarity=0.236 Sum_probs=213.7
Q ss_pred HCCCCCCCEEEEECCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 419864235754084699999936-9919999983889901099999999998608997367899998149919999975
Q 003659 460 TNNFDESWVIGIGGFGKVYKGELN-DGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEY 538 (805)
Q Consensus 460 t~~f~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~ 538 (805)
.+.|...++||+|+||.||+|+.+ +|+.||||++..... ..+|+.+++.++|||||++++++.+++.+++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCC-CEEEEECCCCCCCCCCCC
Q ss_conf 5687500011279999999878999999999999997506999768530688947868999-399943178777999987
Q 003659 539 MENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENF-MAKVADFGLSKTGPEIDQ 617 (805)
Q Consensus 539 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~-~~ki~DFGla~~~~~~~~ 617 (805)
|++|+|.++|...+ .+++.++..++.|++.||+|||+ ++|+||||||+|||++.++ .+||+|||+|+.......
T Consensus 132 ~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred CCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCC
T ss_conf 59986999998769--99999999999999999999998---89042616778879958999799962787768567876
Q ss_pred C---CEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5---2000222456545943231289996035899999999999389999999812221099999998302986301482
Q 003659 618 T---HVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLDQIIDP 694 (805)
Q Consensus 618 ~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~ 694 (805)
. ......+||+.|||||++.+..++.++|||||||++|||+||++||......+....+ .... +
T Consensus 207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i------~~~~-------~ 273 (336)
T 4g3f_A 207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKI------ASEP-------P 273 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHH------HHSC-------C
T ss_pred CCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------HCCC-------C
T ss_conf 54022178545580200899988999890899999999999999786998998999999999------8089-------9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1249999569999999998610007999999789999999999866663
Q 003659 695 TLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAV 743 (805)
Q Consensus 695 ~l~~~~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~~L~~~~~~~~~~ 743 (805)
. ...+++.++..+.+++.+||+.+|.+||++.|+++.|..+++....+
T Consensus 274 ~-~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l 321 (336)
T 4g3f_A 274 P-IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGL 321 (336)
T ss_dssp G-GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSS
T ss_pred C-CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8-00258667999999999976289768959999999999997544321
No 10
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=390.40 Aligned_cols=249 Identities=23% Similarity=0.376 Sum_probs=209.7
Q ss_pred CCCCCCCEEEEECCEEEEEEEEC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 19864235754084699999936-99199999838899010999999999986089973678999981499199999755
Q 003659 461 NNFDESWVIGIGGFGKVYKGELN-DGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYM 539 (805)
Q Consensus 461 ~~f~~~~~LG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~~ 539 (805)
..|+..+.||+|+||.||+|+.+ +|+.||||++........+.+.+|+++|+.++|||||++++++.+.+.+++|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 68750001127999999987899999999999999750699976853068894786899939994317877799998752
Q 003659 540 ENGTLKGHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENFMAKVADFGLSKTGPEIDQTH 619 (805)
Q Consensus 540 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DFGla~~~~~~~~~~ 619 (805)
++|+|.+++... .+++.++..++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.... ...
T Consensus 154 ~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~--~~~ 225 (346)
T 4fih_A 154 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK--EVP 225 (346)
T ss_dssp TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCS--SSC
T ss_pred CCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCC--CCC
T ss_conf 998089998718---98999999999999999999998---8835562788997887999889902757536678--877
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00022245654594323128999603589999999999938999999981222109999999830298630148212499
Q 003659 620 VSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQNKGQLDQIIDPTLAGK 699 (805)
Q Consensus 620 ~~~~~~gt~~y~aPE~~~~~~~s~ksDV~SlGvil~elltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 699 (805)
..+..+||+.|||||++.+..++.++|||||||++|||+||++||....+.+....+ ..+ ..+.+ .
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i-------~~~-----~~~~~--~ 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI-------RDN-----LPPRL--K 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH-------HHS-----SCCCC--S
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-------HCC-----CCCCC--C
T ss_conf 534656275827999977999996899999999999999787998985999999999-------717-----99988--7
Q ss_pred CCHHHHHHHHHHHHHCHHCCCCCCCCHHHHHH
Q ss_conf 99569999999998610007999999789999
Q 003659 700 IRPDSLRKFGETAEKCLADFGVDRPSMGDVLW 731 (805)
Q Consensus 700 ~~~~~~~~l~~li~~Cl~~~p~~RPs~~evl~ 731 (805)
.....+..+.+++.+||+.||.+||++.|+++
T Consensus 292 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 292 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 50229999999999986799568909999960
Done!