Citrus Sinensis ID: 003660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-----
Protein Sequence
MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccEEEEEHHHHHHccccccccEEccccccHHHHHHHHccccEEEEEEEEEccccccccccEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEccccccccccccccEEEEEccEEEcEEEEEccEEEEEcccccccEEEEEEEEcccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccEEEccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccEEEEEccHEEEEEcccccccEEcccccccHHHHHHHccccEEEEEEEEEccccccccEEEEEHHcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEccccccccccccccEEEEEcccEccEEEEcccEEEEEccccccccEEEEEEEcccEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAELLVGseihgfhtlkdlDVANMMEEAktrwlrpneIHAILCNskyfsinakpvnlpksgtvvLFDRKMLRNFrkdghnwkkkkdgktvKEAHEHLKVGNEERIHVYYahgedsptfVRRCYWLLDKTLENIVLVHYRethegtpatppnshsssisdqsaplllseefnsgaghaysaggkelqapnesltvqNHEMRlhelntlewddlvvtndsndsteprgdkfshfdqqNHTAikgaasngsffpshdsyaevssggcltslsqpidrsnntqfnnLDGVYSELmgtqssvssqrnefgevctgdsldilagdglqsqdSFGKWMNyimtdspgsvddpvlepsissghhqftvpehlfsitdvspawafsnektKILVTGFFhkdclhlsksnmfcvcgevrvpaefvqagvyrcflpphspglFLLYMsldghkpisqvlnfeyrspqlhapvassedksKWEEFQVQMRLAHLLFSSfkglnilsskvppnslkEAKKFASKSTCISNSWAYLFKSvgdkrtslpeakdSFFELTLKSKLKEWLLERVVegsktteydvhgQGVIHLCAMLGYTWAILLFSWsglsldfrdkygWTALHWAAYYGREKMVVDLLSagakpnlvtdptsqnpgglnaadiasKKGFDGLAAFLSEQALVAQFNDmtlagnisgslqtgstitvdtqnlteDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTkairfsspEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Flexible Loop (DISEMBL)
maellvgseihgfhtlkdldvANMMEEAKTRWLRPNEIHAILCNSKYFsinakpvnlpksgtvVLFDRKMLrnfrkdghnwkkkkdgktvkeahehlkvgneerIHVYyahgedsptFVRRCYWLLDKTLENIVLVHYRETHEgtpatppnshssSISDQSAPLLLSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHElntlewddlVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSktteydvhGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIqhrfrswkVRKEFLNMRRQAIKIQVILLCIVL
Low Complexity Region (SEG)
MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSayrtaaeaaariqaafrEHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Disordered region (IsUnstruct)
****LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW**************HLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYR*************************************************************LHELNTLEWDDLVV******************************************************************************************GEVCTGDSLDILAGDGLQSQDSFGKWMNYIMT******************HHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYR****************WEEFQVQMRLAHLLFSSFKGLNILS****************KSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA********************IASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRF******AQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIV*
Disordered Region (DISOPRED)
**************TLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKK**********HLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY************************************************************************************************************************************************************************************************************************************ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKG***********************************************KDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS**********************TGSTITV*********VYLKDTLSAYRTAAEAAARIQAAFREHSLK************************************MAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Disordered Region (DISEMBL)
MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGH*************AHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRET********************APLLLSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTND********GDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMG************GEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQL***********KWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSL**********TCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Disordered Region (DISPRO)
*AE*LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETH*************************************************************************************************************************************************************************************QDSFGKWMNYIM*************************PEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILS***********KKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT************************DEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	805	2.2.26 [Sep-21-2011]
O23463	923	Calmodulin-binding transc	yes	no	0.975	0.850	0.594	0.0
Q9LSP8	838	Calmodulin-binding transc	no	no	0.868	0.834	0.536	0.0
Q8GSA7	1032	Calmodulin-binding transc	no	no	0.568	0.443	0.299	6e-54
Q9FYG2	1016	Calmodulin-binding transc	no	no	0.527	0.418	0.350	4e-51
Q9FY74	1007	Calmodulin-binding transc	no	no	0.586	0.468	0.294	3e-50
Q6NPP4	1050	Calmodulin-binding transc	no	no	0.575	0.440	0.290	9e-49
Q9Y6Y1	1673	Calmodulin-binding transc	yes	no	0.149	0.071	0.4	4e-18
A2A891	1682	Calmodulin-binding transc	no	no	0.149	0.071	0.4	4e-18
O94983	1202	Calmodulin-binding transc	no	no	0.149	0.099	0.392	4e-18
Q80Y50	1208	Calmodulin-binding transc	yes	no	0.149	0.099	0.376	1e-16

>sp|O23463|CMTA5_ARATH Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/807 (59%), Positives = 610/807 (75%), Gaps = 22/807 (2%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           L+GSEIHGFHTL+DLD+  M++EA +RWLRPNEIHA+LCN K+F+IN KPVNLPKSGT+V
Sbjct: 9   LIGSEIHGFHTLQDLDIQTMLDEAYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIV 68

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRKMLRNFRKDGHNWKKKKDGKT+KEAHEHLKVGNEERIHVYYAHGED+PTFVRRCYW
Sbjct: 69  LFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDTPTFVRRCYW 128

Query: 125 LLDKTLENIVLVHYRETHE--GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGG 182
           LLDK+ E+IVLVHYRETHE    PATP NS+SSSI+D  +P +++E+ +SG  +  + G 
Sbjct: 129 LLDKSQEHIVLVHYRETHEVHAAPATPGNSYSSSITDHLSPKIVAEDTSSGVHNTCNTG- 187

Query: 183 KELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKG 242
              +  + SL  +NHE+RLHE+NTL+WD+L+V  D ++ + P  +   +F +Q  TA +G
Sbjct: 188 --FEVRSNSLGSRNHEIRLHEINTLDWDELLVPADISNQSHPTEEDMLYFTEQLQTAPRG 245

Query: 243 AASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRN 302
           +   G+    ++   ++ S      L  P+ ++NN+             G   ++  QR 
Sbjct: 246 SVKQGNHLAGYNGSVDIPS---FPGLEDPVYQNNNSCGAGEFSSQHSHCGVDPNL--QRR 300

Query: 303 EFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSG-------- 354
           +F    T    D L  +G  SQDSFG+W+N  ++DSPGSVDDP LE   + G        
Sbjct: 301 DFSATVTDQPGDALLNNGYGSQDSFGRWVNNFISDSPGSVDDPSLEAVYTPGQDSSTPPT 360

Query: 355 --HHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPA 412
             H    +PE +F+ITDVSPAWA+S EKTKILVTGFFH    HL +SN+ C+CGE+RVPA
Sbjct: 361 VFHSHSDIPEQVFNITDVSPAWAYSTEKTKILVTGFFHDSFQHLGRSNLICICGELRVPA 420

Query: 413 EFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDK-SKWE 471
           EF+Q GVYRCFLPP SPG+  LY+S+DG+KPISQ+ +FE+RS Q        +D+  KWE
Sbjct: 421 EFLQMGVYRCFLPPQSPGVVNLYLSVDGNKPISQLFSFEHRSVQFIEKAIPQDDQLYKWE 480

Query: 472 EFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRT 531
           EF+ Q+RLAHLLF+S   +++L+SK+ P +L EAKK AS+++ + NSWAYL KS+     
Sbjct: 481 EFEFQVRLAHLLFTSSNKISVLTSKISPENLLEAKKLASRTSHLLNSWAYLMKSIQANEV 540

Query: 532 SLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
              +A+D  FELTLK++LKEWLLE+V+E   T EYD  G GVIHLCA+LGYTW+ILLFSW
Sbjct: 541 PFDQARDHLFELTLKNRLKEWLLEKVIENRNTKEYDSKGLGVIHLCAVLGYTWSILLFSW 600

Query: 592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           + +SLDFRDK GWTALHWAAYYGREKMV  LLSAGA+PNLVTDPT +  GG  AAD+A +
Sbjct: 601 ANISLDFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTKEFLGGCTAADLAQQ 660

Query: 652 KGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQT-GSTITVDTQNLTEDEVYLKDTLSAY 710
           KG+DGLAAFL+E+ LVAQF DM  AGNISG+L+T  +  + +  N  E+E  LKDTL+AY
Sbjct: 661 KGYDGLAAFLAEKCLVAQFKDMQTAGNISGNLETIKAEKSSNPGNANEEEQSLKDTLAAY 720

Query: 711 RTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAA 770
           RTAAEAAARIQ AFREH LKV++ A+RF+S EEEA+NIIAA+KIQHAFRNFEVR+K+AAA
Sbjct: 721 RTAAEAAARIQGAFREHELKVRSSAVRFASKEEEAKNIIAAMKIQHAFRNFEVRRKIAAA 780

Query: 771 ARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
           ARIQ+RF++WK+R+EFLNMR++AI+IQ
Sbjct: 781 ARIQYRFQTWKMRREFLNMRKKAIRIQ 807

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'. Activates the expression of the V-PPase proton pump in pollen.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSP8|CMTA6_ARATH Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/809 (53%), Positives = 548/809 (67%), Gaps = 110/809 (13%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           L+GSEIHGFHTL+DLDV  M+EEAK+RWLRPNEIHAILC                 G ++
Sbjct: 9   LIGSEIHGFHTLQDLDVQTMLEEAKSRWLRPNEIHAILC-----------------GRII 51

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRKMLRNFRKDGHNWKKKKDG+TVKEAHEHLKVGNEERIHVYYAHGED+ TFVRRCYW
Sbjct: 52  LFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNTTFVRRCYW 111

Query: 125 LLDKTLENIVLVHYRETHEGTPATPPNSHSS--SISDQSAPLLLSEEFNSGAGHAYSAGG 182
           LLDK  ENIVLVHYR+T E    T  +S SS  S+S+Q+ P                   
Sbjct: 112 LLDKARENIVLVHYRDTQEAA-TTSGDSISSPISVSEQTFP------------------- 151

Query: 183 KELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKG 242
             + A +    V+NH++ LH++NTL+WD+L+V  D N+ + P  D  S+F          
Sbjct: 152 NRVAAEDIDTVVRNHDISLHDINTLDWDELLVPTDLNNQSAPTVDNLSYF---------- 201

Query: 243 AASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRN 302
                                     ++P+  + N              GT         
Sbjct: 202 --------------------------TEPLQNAAN--------------GTA-------- 213

Query: 303 EFGEVCTGD-SLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSI---------- 351
           E G     D SLD L  DG QS++SFG+WMN  +++S GS++DP  EP +          
Sbjct: 214 EHGNATVADGSLDALLNDGPQSRESFGRWMNSFISESNGSLEDPSFEPMVMPRQDPLAPQ 273

Query: 352 SSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVP 411
           +  H    +PE +F+ITDVSPAWA+S+EKTKILVTGF H    HL +SN++CVCG+  VP
Sbjct: 274 AVFHSHSNIPEQVFNITDVSPAWAYSSEKTKILVTGFLHDSYQHLERSNLYCVCGDFCVP 333

Query: 412 AEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRS-PQLHAPVASSEDKSKW 470
           AE++QAGVYRC +PPHSPG+  LY+S DGHKPISQ   FE+R+ P L   V      SKW
Sbjct: 334 AEYLQAGVYRCIIPPHSPGMVNLYLSADGHKPISQCFRFEHRAVPVLDKTVPEDNQDSKW 393

Query: 471 EEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKR 530
           EEF+ Q+RL+HLLF+S   LN+LSSK+ P++L++AKK ASK+  + NSWAYL KS+   +
Sbjct: 394 EEFEFQVRLSHLLFTSSNKLNVLSSKISPHNLRDAKKLASKTNHLLNSWAYLVKSIQGNK 453

Query: 531 TSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFS 590
            S  +AKD  FEL+LK++LKEWL+E+V+EG  T +YD  G GVIHLCA LGYTW++ LFS
Sbjct: 454 VSFDQAKDHLFELSLKNRLKEWLMEKVLEGRNTLDYDSKGLGVIHLCASLGYTWSVQLFS 513

Query: 591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS 650
            SGLSL+FRDK GWTALHWAAYYGREKMV  LLSAGA+PNLVTD T  N GG  AAD+A 
Sbjct: 514 LSGLSLNFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDSTKDNLGGCMAADLAQ 573

Query: 651 KKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAY 710
           + G+DGLAA+L+E+ LVAQF DM +AGNI+G L+      ++   L EDE  LKD L+AY
Sbjct: 574 QNGYDGLAAYLAEKCLVAQFRDMKIAGNITGDLEACKAEMLNQGTLPEDEQSLKDALAAY 633

Query: 711 RTAAEAAARIQAAFREHSLK-VQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAA 769
           RTAAEAAARIQ AFRE +LK  ++  I+F++ EEEA++IIAA+KIQ+AFR ++ R+K+ A
Sbjct: 634 RTAAEAAARIQGAFREKALKAARSSVIQFANKEEEAKSIIAAMKIQNAFRKYDTRRKIEA 693

Query: 770 AARIQHRFRSWKVRKEFLNMRRQAIKIQV 798
           A RIQ RF++WK+R+E+LNMRRQAI+IQ 
Sbjct: 694 AYRIQCRFQTWKIRREYLNMRRQAIRIQA 722

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GSA7|CMTA3_ARATH Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1

 Score =  213 bits (541), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 241/521 (46%), Gaps = 63/521 (12%)

Query: 316 LAGDGLQSQDSFGKWMNYIMTD---------------------------------SPGSV 342
           L  +GL+  DSF +WM+  + D                                 S   +
Sbjct: 389 LGEEGLKKMDSFNRWMSKELGDVGVIADANESFTQSSSRTYWEEVESEDGSNGHNSRRDM 448

Query: 343 DDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMF 402
           D  V+ PS+S         E LFSI D SP+WA+   +  + VTG F K           
Sbjct: 449 DGYVMSPSLSK--------EQLFSINDFSPSWAYVGCEVVVFVTGKFLKTREETEIGEWS 500

Query: 403 CVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVA 462
           C+ G+  VPA+ +  G+ +C  P H  G    Y++       S+V  FEY+  +      
Sbjct: 501 CMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCSNRLACSEVREFEYKVAESQVFDR 560

Query: 463 SSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYL 522
            ++D+S  +  +   R   LL S  +     +S V  N   +  + + K + +       
Sbjct: 561 EADDESTIDILEA--RFVKLLCSKSEN----TSPVSGND-SDLSQLSEKISLLLFENDDQ 613

Query: 523 FKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSK-TTEYDVHGQGVIHLCAMLG 581
              +     S    K++  +  LK  L  WLL+++ EG K  +  D  GQGV+H  A LG
Sbjct: 614 LDQMLMNEISQENMKNNLLQEFLKESLHSWLLQKIAEGGKGPSVLDEGGQGVLHFAASLG 673

Query: 582 YTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPG 641
           Y WA+     +G+S+DFRD  GWTALHWAA++GRE+++  L++ GA P  +TDP    P 
Sbjct: 674 YNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRERIIGSLIALGAAPGTLTDPNPDFPS 733

Query: 642 GLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEV 701
           G   +D+A   G  G+A +LSE AL A  + ++L    + +++   + +  +        
Sbjct: 734 GSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLNDKNAETVEMAPSPSSSSLTD----- 788

Query: 702 YLKDTLSAYRTAAEAAARIQAAFREHSL-KVQTKAI---RFSSPEEEAQNIIAALKIQHA 757
               +L+A R A +AAARI   FR  S  K Q K     +    EE A +++A  K   +
Sbjct: 789 ----SLTAVRNATQAAARIHQVFRAQSFQKKQLKEFGDKKLGMSEERALSMLAP-KTHKS 843

Query: 758 FRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQV 798
            R        AAA RIQ++FR +K RK++L  R++ IKIQ 
Sbjct: 844 GRAHSDDSVQAAAIRIQNKFRGYKGRKDYLITRQRIIKIQA 884

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG2|CMTA4_ARATH Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1

 Score =  203 bits (517), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 222/451 (49%), Gaps = 26/451 (5%)

Query: 365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFL 424
           F+I D+SP W ++NE TK+++ G F  D    ++S   C+ G  +VP E ++ GV RC  
Sbjct: 446 FTIQDISPDWGYANETTKVIIIGSFLCD---PTESTWSCMFGNAQVPFEIIKEGVIRCEA 502

Query: 425 PPHSPGLFLLYMSLDGHKPISQVLNFEYRS-PQLHAPVASSEDKSKW----EEFQVQMRL 479
           P   PG   L ++       S++  FEYR  P    P  S    S       E  + +R 
Sbjct: 503 PQCGPGKVNLCITSGDGLLCSEIREFEYREKPDTCCPKCSEPQTSDMSTSPNELILLVRF 562

Query: 480 AHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDS 539
              L S        SS+   N      K  +K     + W ++  ++ D   S     D 
Sbjct: 563 VQTLLSD------RSSERKSNLESGNDKLLTKLKADDDQWRHVIGTIIDGSASSTSTVDW 616

Query: 540 FFELTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 598
             +  LK KL  WL  R   E   T       QG+IH+ A LG+ WA       G+++DF
Sbjct: 617 LLQELLKDKLDTWLSSRSCDEDYITCSLSKQEQGIIHMVAGLGFEWAFYPILAHGVNVDF 676

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           RD  GW+ALHWAA +G EKMV  L+++GA    VTDP+ Q+P G  AA IA+  G  GLA
Sbjct: 677 RDIKGWSALHWAAQFGSEKMVAALIASGASAGAVTDPSRQDPNGKTAASIAASNGHKGLA 736

Query: 659 AFLSEQALVAQFNDMTLA----GNISGSLQTGST---ITVDTQNLTEDEVYLKDTLSAYR 711
            +LSE AL    + +TL        +  +QT  T   I+  + +  ED+V LKDTL+A R
Sbjct: 737 GYLSEVALTNHLSSLTLEETENSKDTAQVQTEKTLNSISEQSPSGNEDQVSLKDTLAAVR 796

Query: 712 TAAEAAARIQAAFREHSL--KVQTKAIRFSSPEEEAQNI--IAALKIQHAFRNFEVRKKM 767
            AA+AAARIQAAFR HS   + Q +A   +  +E       I  +         + R   
Sbjct: 797 NAAQAAARIQAAFRAHSFRKRKQREAALVACLQEYGMYCEDIEGISAMSKLTFGKGRNYN 856

Query: 768 AAAARIQHRFRSWKVRKEFLNMRRQAIKIQV 798
           +AA  IQ  FR +K RK FL +R++ +KIQ 
Sbjct: 857 SAALSIQKNFRGYKDRKCFLELRQKVVKIQA 887

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY74|CMTA1_ARATH Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=2

 Score =  201 bits (510), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 237/506 (46%), Gaps = 34/506 (6%)

Query: 319 DGLQSQDSFGKWM--------NYIMTDSPGSVDDPVLEPSISSGHHQFT---VPEHLFSI 367
           D L+  DSF KW         +  M  S G +    +E   ++     +     +  F+I
Sbjct: 354 DSLKKVDSFSKWAIKELGEMEDLQMQSSRGDIAWTTVECETAAAGISLSPSLSEDQRFTI 413

Query: 368 TDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPH 427
            D  P  A ++ + +++V G F      ++K N  C+ GEV VPAE +  GV  C  PPH
Sbjct: 414 VDFWPKSAKTDAEVEVMVIGTFLLSPQEVTKYNWSCMFGEVEVPAEILVDGVLCCHAPPH 473

Query: 428 SPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSF 487
           + G    Y++       S+V  F++ S       A+    +   E  +Q+R   +L    
Sbjct: 474 TAGHVPFYVTCSNRFACSEVREFDFLSGSTQKINATDVYGTYTNEASLQLRFEKMLAHR- 532

Query: 488 KGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKS 547
              + +        + + ++  SK   +     YL      + ++  E K   F    + 
Sbjct: 533 ---DFVHEHHIFEDVGDKRRQISKIMLLKEEKEYLLPGTYQRDSTKQEPKGQLFRELFEE 589

Query: 548 KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTA 606
           +L  WL+ +V E G      D  GQG++H  A LGY WAI     +G++++FRD  GW+A
Sbjct: 590 ELYIWLIHKVTEEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSA 649

Query: 607 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQAL 666
           LHWAA+ GRE+ V  L+S GA    +TDP+ + P G  AAD+A   G  G++ FL+E +L
Sbjct: 650 LHWAAFSGREETVAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSL 709

Query: 667 VAQFNDMTL------AGNISG--SLQTGSTITVD--TQNLTEDEVYLKDTLSAYRTAAEA 716
            +    +T+        N  G  ++QT S  T    T     +++ LKD+L+A R A +A
Sbjct: 710 TSYLEKLTVDSKENSPANSCGEKAVQTVSERTAAPMTYGDVPEKLSLKDSLTAVRNATQA 769

Query: 717 AARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKK-----MAAAA 771
           A R+   FR  S   Q K +     ++E  +I   L +  A    +   +       AA 
Sbjct: 770 ADRLHQVFRMQSF--QRKQL-CDIGDDEKIDISDQLAVSFAASKTKNPGQGDVSLSCAAT 826

Query: 772 RIQHRFRSWKVRKEFLNMRRQAIKIQ 797
            IQ ++R WK RKEFL +R++ +KIQ
Sbjct: 827 HIQKKYRGWKKRKEFLLIRQRIVKIQ 852

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'. Activates the expression of the V-PPase proton pump in pollen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPP4|CMTA2_ARATH Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1

 Score =  195 bits (496), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 150/517 (29%), Positives = 242/517 (46%), Gaps = 54/517 (10%)

Query: 319 DGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPE---------------- 362
           D L+  DSF +W++  +    G ++D  L+   SSG   +T  E                
Sbjct: 403 DSLKKVDSFSRWVSKEL----GEMED--LQMQSSSGGIAWTSVECENAAAGSSLSPSLSE 456

Query: 363 -HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYR 421
              F++ D  P W  ++ + +++V G F      ++  +  C+ GEV VPA+ +  GV  
Sbjct: 457 DQRFTMIDFWPKWTQTDSEVEVMVIGTFLLSPQEVTSYSWSCMFGEVEVPADILVDGVLC 516

Query: 422 CFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQMRLAH 481
           C  PPH  G    Y++       S+V  F++         A+    +   E  + +R  +
Sbjct: 517 CHAPPHEVGRVPFYITCSDRFSCSEVREFDFLPGSTRKLNATDIYGANTIETSLHLRFEN 576

Query: 482 LLF--SSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDS 539
           LL    S +  +I        ++ E ++  SK   + +          +K  +  EAK+ 
Sbjct: 577 LLALRCSVQEHHIF------ENVGEKRRKISKIMLLKDEKEPPLPGTIEKDLTELEAKER 630

Query: 540 FFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF 598
                 + KL  WL+ +V E G      D  GQGV+HL A LGY WAI     +G+S++F
Sbjct: 631 LIREEFEDKLYLWLIHKVTEEGKGPNILDEDGQGVLHLAAALGYDWAIKPILAAGVSINF 690

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           RD  GW+ALHWAA+ GRE  V  L+S GA    + DP+ ++P G  AAD+A   G  G++
Sbjct: 691 RDANGWSALHWAAFSGREDTVAVLVSLGADAGALADPSPEHPLGKTAADLAYGNGHRGIS 750

Query: 659 AFLSEQALVAQFNDMTLAGNISGSLQTG---STITVDTQNLT-------EDEVYLKDTLS 708
            FL+E +L +    +T+    + S  +    + +TV  +  T        + + +KD+L+
Sbjct: 751 GFLAESSLTSYLEKLTVDAKENSSADSSGAKAVLTVAERTATPMSYGDVPETLSMKDSLT 810

Query: 709 AYRTAAEAAARIQAAFREHSLKVQTKAI-------RFSSPEEEAQNIIAALKIQHAFRNF 761
           A   A +AA R+   FR  S   Q K +       +F   +E A +  AA   +    + 
Sbjct: 811 AVLNATQAADRLHQVFRMQSF--QRKQLSELGGDNKFDISDELAVSFAAAKTKKSGHSSG 868

Query: 762 EVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQV 798
            V    AAA +IQ ++R WK RKEFL +R++ +KIQ 
Sbjct: 869 AVH---AAAVQIQKKYRGWKKRKEFLLIRQRIVKIQA 902

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y6Y1|CMTA1_HUMAN Calmodulin-binding transcription activator 1 OS=Homo sapiens GN=CAMTA1 PE=1 SV=4

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 5/125 (4%)

Query: 16  LKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFS--INAKPVNLPKSGTVVLFDRKMLRN 73
           L+ L   + + + + RW    EI A L   +     +   P   P++G+++L++RK ++ 
Sbjct: 58  LECLPKCSSLPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVK- 116

Query: 74  FRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENI 133
           +RKDG+ WKK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +I
Sbjct: 117 YRKDGYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQNP--DI 174

Query: 134 VLVHY 138
           VLVHY
Sbjct: 175 VLVHY 179

Transcriptional activator. May act as a tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|A2A891|CMTA1_MOUSE Calmodulin-binding transcription activator 1 OS=Mus musculus GN=Camta1 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 5/125 (4%)

Query: 16  LKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFS--INAKPVNLPKSGTVVLFDRKMLRN 73
           L+ L   + + + + RW    EI A L   +     +   P   P++G+++L++RK ++ 
Sbjct: 58  LECLPKCSSLPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVK- 116

Query: 74  FRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENI 133
           +RKDG+ WKK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +I
Sbjct: 117 YRKDGYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQNP--DI 174

Query: 134 VLVHY 138
           VLVHY
Sbjct: 175 VLVHY 179

Transcriptional activator.

Mus musculus (taxid: 10090)

>sp|O94983|CMTA2_HUMAN Calmodulin-binding transcription activator 2 OS=Homo sapiens GN=CAMTA2 PE=1 SV=3

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 5/125 (4%)

Query: 16  LKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFS--INAKPVNLPKSGTVVLFDRKMLRN 73
           L+ L    ++   + RW    EI + L   +     ++  P   P++G+++L++RK ++ 
Sbjct: 25  LECLPRCPLLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK- 83

Query: 74  FRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENI 133
           +RKDG+ WKK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +I
Sbjct: 84  YRKDGYLWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DI 141

Query: 134 VLVHY 138
           VLVHY
Sbjct: 142 VLVHY 146

Transcription activator. May act as tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|Q80Y50|CMTA2_MOUSE Calmodulin-binding transcription activator 2 OS=Mus musculus GN=Camta2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 10/130 (7%)

Query: 16  LKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFS--INAKPVNLPKSGTVVLFDRKMLRN 73
           L+ L    ++   + RW    EI + L   +     ++  P   P++G+++L++RK ++ 
Sbjct: 25  LECLPRCPLLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK- 83

Query: 74  FRKDGHNWKKKKDGKTVKEAHEHLKVGNEERI-----HVYYAHGEDSPTFVRRCYWLLDK 128
           +RKDG+ WKK+KDGKT +E H  LKV   E +     +  Y H    PTF RRCYWLL  
Sbjct: 84  YRKDGYLWKKRKDGKTTREDHMKLKVQGMEPVSWQCLYGCYVHSSIVPTFHRRCYWLLQN 143

Query: 129 TLENIVLVHY 138
              +IVLVHY
Sbjct: 144 P--DIVLVHY 151

Transcription activator. May act as tumor suppressor.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	805
224108659	915	predicted protein [Populus trichocarpa]	0.980	0.862	0.674	0.0
356519932	920	PREDICTED: calmodulin-binding transcript	0.978	0.856	0.638	0.0
359477127	927	PREDICTED: calmodulin-binding transcript	0.985	0.855	0.633	0.0
357478931	920	Calmodulin-binding transcription activat	0.976	0.854	0.639	0.0
356564630	921	PREDICTED: calmodulin-binding transcript	0.975	0.852	0.635	0.0
356558139	911	PREDICTED: calmodulin-binding transcript	0.952	0.841	0.643	0.0
255556328	918	calmodulin-binding transcription activat	0.956	0.838	0.635	0.0
147834981	907	hypothetical protein VITISV_010763 [Viti	0.945	0.839	0.609	0.0
356532529	911	PREDICTED: calmodulin-binding transcript	0.956	0.845	0.640	0.0
449501552	910	PREDICTED: LOW QUALITY PROTEIN: calmodul	0.952	0.842	0.612	0.0

>gi|224108659|ref|XP_002314926.1| predicted protein [Populus trichocarpa] gi|222863966|gb|EEF01097.1| predicted protein [Populus trichocarpa]

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/806 (67%), Positives = 653/806 (81%), Gaps = 17/806 (2%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           L+GSEIHGF+ L+DLDV N+MEE++TRWLRPNEIHA+LCN K F+IN KPVN PKSGT+V
Sbjct: 9   LIGSEIHGFNFLRDLDVPNIMEESRTRWLRPNEIHAMLCNYKLFTINVKPVNFPKSGTIV 68

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG+D+ TFVRRCYW
Sbjct: 69  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQTFVRRCYW 128

Query: 125 LLDKTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKE 184
           LLDK+LE+IVLVHYRET EG+PATP NSHSSS+SDQSAP LLSEEF+SGA  AY +   +
Sbjct: 129 LLDKSLEHIVLVHYRETQEGSPATPVNSHSSSVSDQSAPRLLSEEFDSGAARAYDS---K 185

Query: 185 LQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAA 244
           L   ++SLTV++H MRLHELNTLEWD+LV TND  +   P GDK   FD+QN  A+ G+ 
Sbjct: 186 LTGSSDSLTVRSHAMRLHELNTLEWDELV-TNDPGNLIPPGGDKIPCFDRQNQIAVNGSV 244

Query: 245 SNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEF 304
           ++G     +   AE+S+ G LT   + I RS NTQFN+ D VYS+L   Q +  +QR   
Sbjct: 245 NDGGILSGYHLSAEMSTLGNLT---KSIVRSGNTQFNSPDSVYSQLTSAQVNSDAQRKGS 301

Query: 305 GEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGH--------- 355
               T DSL+ L  DGLQSQDSFG+WM+ I+  SP SVDD VLE SISSGH         
Sbjct: 302 IVPGTSDSLNNLFNDGLQSQDSFGRWMSSIIDHSPCSVDDAVLESSISSGHDSFASPGID 361

Query: 356 -HQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEF 414
            HQ +V E  F ITD SPAWAFSNE TKILVTG+FH+   HL+KSN+FC+CG+    AE 
Sbjct: 362 QHQSSVQEQTFIITDFSPAWAFSNETTKILVTGYFHEQYQHLAKSNLFCICGDTFARAEI 421

Query: 415 VQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQ 474
           VQ GVY   LPPHSPGL  L +SLDG +P SQ+LNFEYR+P +H PV SSEDKSKWEEF 
Sbjct: 422 VQVGVYSFMLPPHSPGLVNLCLSLDGLEPTSQILNFEYRAPSVHDPVVSSEDKSKWEEFH 481

Query: 475 VQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLP 534
           +QMRLA+LLFS+ K L+++S+K+ P +LKEAKKFA K++ ISNSWAYL K++ D   S+ 
Sbjct: 482 LQMRLAYLLFSTSKTLDVISNKLSPTNLKEAKKFALKTSNISNSWAYLIKAIEDGGISVA 541

Query: 535 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGL 594
           +AKD FFEL+LK+ ++EWLLERV+EG KTT YD  G GVIHLCA++GYTWA+ LFSWSGL
Sbjct: 542 QAKDGFFELSLKNTIREWLLERVLEGCKTTGYDAQGLGVIHLCAIIGYTWAVYLFSWSGL 601

Query: 595 SLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654
           SLDFRDK+GWTALHWAAYYGREKMV  LLSAGAKPNLVTDPT +NPGG  AAD+AS KG+
Sbjct: 602 SLDFRDKHGWTALHWAAYYGREKMVGALLSAGAKPNLVTDPTKENPGGCTAADLASAKGY 661

Query: 655 DGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAA 714
           DGLAA+LSE+ALVAQF  M +AGN++GSL T +T TV+++NL+E+E+YLKDTL+AYRTAA
Sbjct: 662 DGLAAYLSEKALVAQFESMIIAGNVTGSLPTTATNTVNSENLSEEELYLKDTLAAYRTAA 721

Query: 715 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQ 774
           +AAARIQ AFREHSL V+TKA++ SSPE+EA+NIIAA+KIQHAFRN++ +KKMAAAARIQ
Sbjct: 722 DAAARIQVAFREHSLMVRTKAVQSSSPEDEARNIIAAMKIQHAFRNYDSKKKMAAAARIQ 781

Query: 775 HRFRSWKVRKEFLNMRRQAIKIQVIL 800
           HRFR+WK+R++FLNMR + IKIQ + 
Sbjct: 782 HRFRTWKIRRDFLNMRHKTIKIQAVF 807

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519932|ref|XP_003528622.1| PREDICTED: calmodulin-binding transcription activator 5-like [Glycine max]

 Score = 1054 bits (2726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/814 (63%), Positives = 628/814 (77%), Gaps = 26/814 (3%)

Query: 1   MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKS 60
           +A  LVGSE+HGFHTL+DLDV ++MEEA+TRWLRPNEIHA+LCN KYF+IN KPVNLPKS
Sbjct: 5   LAVQLVGSEMHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKS 64

Query: 61  GTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVR 120
           GT+VLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG+D+P FVR
Sbjct: 65  GTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVR 124

Query: 121 RCYWLLDKTLENIVLVHYRETHE--GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAY 178
           RCYWLLDK++E+IVLVHYRET E  G+P TP NSHSSS+SD  AP +LSEE +SG   AY
Sbjct: 125 RCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAY 184

Query: 179 SAGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHT 238
           +           ++ V++HE+RLHE+NTLEWDDLV TND N ST P G    +FDQQ+  
Sbjct: 185 TDMSN-------NINVKSHELRLHEINTLEWDDLVDTNDHNASTVPNGGTVPYFDQQDQI 237

Query: 239 AIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVS 298
            +  +  N     +++  AE+ S G LT   QPI  SN   +N  + V  + M  Q++  
Sbjct: 238 LLNDSFGN----VANNLSAEIPSFGNLT---QPIAGSNRVPYNFSESVTLQTMDNQANPH 290

Query: 299 SQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQF 358
            Q+N    +   DSLD L  D LQSQDSFG W+N+IM+DSP SVDDP LE  +SS H  +
Sbjct: 291 EQKNNTVSLSGVDSLDTLVNDRLQSQDSFGMWVNHIMSDSPCSVDDPALESPVSSIHEPY 350

Query: 359 T----------VPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEV 408
           +          +PE +F+ITDVSP    S EK+K+LVTGFF KD +HLSKSN+ CVCG+V
Sbjct: 351 SSLVVDSQESSLPEQVFTITDVSPTCVSSTEKSKVLVTGFFLKDYMHLSKSNLLCVCGDV 410

Query: 409 RVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKS 468
            VPAE VQ GVYRC++ PHSPG   LY+S+DGHKPISQV+NFEYR+P LH P  S E+  
Sbjct: 411 SVPAEIVQVGVYRCWVSPHSPGFVNLYLSIDGHKPISQVVNFEYRTPALHDPAVSMEESD 470

Query: 469 KWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGD 528
            W+EF+ QMRLA+LLF+    L+++SSKV PN LKEA++FA K++ ISNSW YL KS  D
Sbjct: 471 NWDEFRQQMRLAYLLFAKQLNLDVISSKVSPNRLKEARQFALKTSFISNSWQYLIKSTED 530

Query: 529 KRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILL 588
            +    +AKD+ F +TLK++LKEWLLER+V G KTTEYD HGQ VIHLCA+LGY WA+ L
Sbjct: 531 NQIPFSQAKDALFGITLKNRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYNWAVSL 590

Query: 589 FSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADI 648
           FSWSGLSLDFRD++GWTALHWAAY GREKMV  LLSAGAKPNLVTDPT QNPGG  AAD+
Sbjct: 591 FSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADL 650

Query: 649 ASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLS 708
           A  +G DGLAA+LSE++LV  FNDM+LAGNISGSL+T +T  V+  NLTED+  LKDTL+
Sbjct: 651 AYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVNPANLTEDQQNLKDTLT 710

Query: 709 AYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMA 768
           AYRTAAEAA+RI AAFREHSLK++TKA+  S+PE +A+ I+AA+KIQHAFRN E +K MA
Sbjct: 711 AYRTAAEAASRIHAAFREHSLKLRTKAVASSNPEAQARKIVAAMKIQHAFRNHETKKMMA 770

Query: 769 AAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLC 802
           AAARIQ  +R+WK+RKEFLNMRRQA+KIQ    C
Sbjct: 771 AAARIQCTYRTWKIRKEFLNMRRQAVKIQAAFRC 804

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477127|ref|XP_002272118.2| PREDICTED: calmodulin-binding transcription activator 5-like [Vitis vinifera] gi|296083270|emb|CBI22906.3| unnamed protein product [Vitis vinifera]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/811 (63%), Positives = 633/811 (78%), Gaps = 18/811 (2%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           L G +IHGF T++DLDV +++EEAK RWLRPNEIHAILCN   F++N KPVNLP SG +V
Sbjct: 9   LAGWDIHGFRTMEDLDVDSILEEAKGRWLRPNEIHAILCNYTLFTVNVKPVNLPPSGKIV 68

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDR+MLRNFRKDGHNWKKK DGKTVKEAHEHLKVGN+ERIHVYYAHG+D+PTFVRRCYW
Sbjct: 69  LFDRRMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPTFVRRCYW 128

Query: 125 LLDKTLENIVLVHYRETHE--GTPATPPNSH---SSSISDQSAPLLLSEEFNSGAGHAYS 179
           LLDKTLE+IVLVHYRET E  G+P TP NS    +S+ SD SAP LLSEE +SG G  Y 
Sbjct: 129 LLDKTLEHIVLVHYRETQESQGSPVTPVNSSPSPNSATSDPSAPWLLSEETDSGTGSTYR 188

Query: 180 AGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTA 239
           AG KE Q P +S+TV+N+EMR+HELNTLEWD+L+V+ND N+S  P+  K S F+QQN   
Sbjct: 189 AGEKEHQEPRDSITVRNYEMRIHELNTLEWDELLVSNDPNNSMAPKEGKISSFEQQNQHV 248

Query: 240 IKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSS 299
           I  + S      ++D    +S    L + ++ I  + +  FN LD VY + +G Q + + 
Sbjct: 249 ITSSNSYNRPHSTNDLPVGISP---LGNPAESIAGNESAHFNFLDDVYFQKIGGQVNPNG 305

Query: 300 QRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVL----------EP 349
           QR +   V TGD +DIL  D L+ QDSFG+WMNYIMTDSP SVDDP L            
Sbjct: 306 QRRDSVAVGTGDPVDILLKDSLEPQDSFGRWMNYIMTDSPVSVDDPSLGSPVSSSHDSVV 365

Query: 350 SISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVR 409
           S +  H Q +VP+ +FSITD SP+WA S EKTKILV GF H++   L+KSN+F VCG+V 
Sbjct: 366 SAAGNHQQSSVPDTIFSITDFSPSWAISTEKTKILVIGFLHENYADLAKSNLFFVCGDVC 425

Query: 410 VPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSK 469
           VPAE +Q GV+RC +PPH+PGL   Y+S DGHKPISQV+ FEYR+P L+    SSE ++ 
Sbjct: 426 VPAEIIQLGVFRCLVPPHAPGLVNFYLSFDGHKPISQVVTFEYRAPLLYNQTVSSEVETN 485

Query: 470 WEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDK 529
           WEEFQ QMRL+HLLFS+ KGLNI+SSK+ PN+L+EAK F  K++ I+ +WA L K++GD 
Sbjct: 486 WEEFQFQMRLSHLLFSTSKGLNIMSSKISPNALREAKNFVKKTSFIARNWANLTKTIGDN 545

Query: 530 RTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLF 589
           R  + +AKD  FE  L +KL+EWL+ER+VEG KT+E D  GQGVIHLCAMLGYT A+ L+
Sbjct: 546 RILVSQAKDLLFEFALLNKLQEWLVERIVEGGKTSERDGQGQGVIHLCAMLGYTRAVYLY 605

Query: 590 SWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
           S SGLSLD+RDK+GWTALHWAAYYGR+KMV  LLSAGAKPNLVTDPTS+NPGG  AAD+A
Sbjct: 606 SLSGLSLDYRDKFGWTALHWAAYYGRQKMVAVLLSAGAKPNLVTDPTSENPGGCTAADLA 665

Query: 650 SKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSA 709
           SK+G DGLAA+L+E+ LV QFNDMTLAGN+SGSLQ  +T  ++++NL+E+E+ LKDTL+A
Sbjct: 666 SKEGHDGLAAYLAEKGLVEQFNDMTLAGNVSGSLQVSTTEQINSENLSEEEMNLKDTLAA 725

Query: 710 YRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAA 769
           YRTAA+AAARIQ AFRE SLK++TKA+   +PE EA+NI+AA++IQHAFRN+E RK+MAA
Sbjct: 726 YRTAADAAARIQVAFRERSLKLRTKAVENCNPEIEARNIVAAMRIQHAFRNYETRKRMAA 785

Query: 770 AARIQHRFRSWKVRKEFLNMRRQAIKIQVIL 800
           AARIQHRFRSWK+RKEFLNMRRQAIKIQ + 
Sbjct: 786 AARIQHRFRSWKIRKEFLNMRRQAIKIQAVF 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478931|ref|XP_003609751.1| Calmodulin-binding transcription activator [Medicago truncatula] gi|355510806|gb|AES91948.1| Calmodulin-binding transcription activator [Medicago truncatula]

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/809 (63%), Positives = 632/809 (78%), Gaps = 23/809 (2%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           LVGSEIHGFHTL+DLDVA++ EEA+TRWLRPNEIHA+L N KYF+IN KP+NLPKSGT+V
Sbjct: 9   LVGSEIHGFHTLQDLDVASITEEARTRWLRPNEIHAMLSNHKYFTINVKPMNLPKSGTIV 68

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRK LRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG D+P FVRRCYW
Sbjct: 69  LFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFVRRCYW 128

Query: 125 LLDKTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKE 184
           LLDK+LE+IVLVHYRET EG+P TP NS+S++ SD SAP LLSEE +SG   AY+     
Sbjct: 129 LLDKSLEHIVLVHYRETQEGSPITPVNSNSTTASDPSAPWLLSEEIDSGTKTAYAG---- 184

Query: 185 LQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAA 244
               NE++TV++HE+RLHELNTLEWDDLVV ND N S  P G K  +FDQQN   +  + 
Sbjct: 185 --EINENITVKSHELRLHELNTLEWDDLVVANDLNTSVVPNGGKVPYFDQQNQILLNDSF 242

Query: 245 SNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQRNEF 304
           SN      +++ AE+ +     +L+QPI  SN+  +N  + V  + +  Q   + QRN  
Sbjct: 243 SN----VVNNASAEIRT---FNNLTQPIAVSNSIPYNFSESVTLQTISNQGYQNEQRNHP 295

Query: 305 GEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISS----------G 354
                 DSL+ L  D LQSQDSFG W+N  M+DSP SVDD  L  S+SS           
Sbjct: 296 VSSSGVDSLNTLVNDRLQSQDSFGMWVNQFMSDSPCSVDDSALGSSVSSVNEPYSSLVVD 355

Query: 355 HHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEF 414
           + Q ++PE +F++TDVSPAW  S EK+KILVTG FHKD LHL KSN+ CVCG+  VPAE 
Sbjct: 356 NQQLSLPEQVFNLTDVSPAWVSSTEKSKILVTGLFHKDYLHLPKSNLICVCGDASVPAEI 415

Query: 415 VQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQ 474
           VQ GVYRC++PPHSPG   LY+S DGH PISQV+ FEYR+P LH PVAS E+K+ W+EFQ
Sbjct: 416 VQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVTFEYRTPVLHDPVASMEEKNNWDEFQ 475

Query: 475 VQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLP 534
           +QMRL++LLF+  + L+++SSKV  + LKEA++F+ K++ ISN+W YL KS  D +    
Sbjct: 476 LQMRLSYLLFAKQQSLDVISSKVSLSRLKEAREFSLKTSFISNTWQYLMKSTLDNKIPFS 535

Query: 535 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGL 594
           +AKD+ F + LK++LKEWL E++V G KTTEYD  GQ VIHLCA+L YTWAI LFSWSGL
Sbjct: 536 QAKDALFGIALKNRLKEWLSEKIVLGCKTTEYDAQGQSVIHLCAILEYTWAITLFSWSGL 595

Query: 595 SLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654
           SLDFRDK+GWTALHWAAYYGREKMV  LLSAGAKPNLVTDPT QNPGG  AAD+A  +G+
Sbjct: 596 SLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGY 655

Query: 655 DGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAA 714
            GLAA+LSE++LV QFNDM+LAGNISGSL+T +   V+++NLTE+++Y+KDTL+AYRTAA
Sbjct: 656 HGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYVKDTLAAYRTAA 715

Query: 715 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQ 774
           +AAARIQ A+R+HSLK+QT+A+ FSSPE EA+ I+AA+KIQHAFRNFE +K MAAAARIQ
Sbjct: 716 DAAARIQEAYRQHSLKLQTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQ 775

Query: 775 HRFRSWKVRKEFLNMRRQAIKIQVILLCI 803
           HRFR+WK+R++FLNMRRQAIKIQ    C 
Sbjct: 776 HRFRTWKIRRDFLNMRRQAIKIQAAFRCF 804

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564630|ref|XP_003550554.1| PREDICTED: calmodulin-binding transcription activator 5-like [Glycine max]

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/813 (63%), Positives = 623/813 (76%), Gaps = 28/813 (3%)

Query: 2   AELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSG 61
           A+ LVGSEIHGFHTL+DLDV ++MEEA+TRWLRPNEIHA+LCN KYF+IN KPVNLPKSG
Sbjct: 7   AQQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSG 66

Query: 62  TVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRR 121
           T+VLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG+D+P FVRR
Sbjct: 67  TIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRR 126

Query: 122 CYWLLDKTLENIVLVHYRETHE--GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYS 179
           CYWLLDK++E+IVLVHYRE  E  G+P TP NSHSSS+SD  AP +LSEE +SG   AY+
Sbjct: 127 CYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYA 186

Query: 180 AGGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTA 239
                      ++ V++HE+RLHE+NTL+WDDLV  ND N +T P G    +FD Q+   
Sbjct: 187 DTSA-------NINVKSHELRLHEINTLDWDDLVDANDHNTTTVPNGGTVPYFDLQDQIL 239

Query: 240 IKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSS 299
           +  + SN     +++  A++ S G   SL+QPI  SN+  +N    V  + M  Q++   
Sbjct: 240 LNDSFSN----VANNLSADIPSFG---SLTQPIAGSNSVPYN-FSSVNLQTMDDQANPHE 291

Query: 300 QRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGH---- 355
           QRN    +   DSLD L  D LQSQ+SFG W+N IM+DSP SVDDP LE  +SS H    
Sbjct: 292 QRNNTVSLSGVDSLDTLVNDRLQSQNSFGMWVNPIMSDSPCSVDDPALESPVSSVHEPYS 351

Query: 356 ------HQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVR 409
                  Q ++P  +F+ITDVSP    S EK+K+LVTGFFHKD +HLSKSN+ CVCG+V 
Sbjct: 352 SLIVDSQQSSLPGQVFTITDVSPTCVSSTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVS 411

Query: 410 VPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSK 469
           VPAE VQ GVYRC++ PHSPG   LYMS+DGHKPISQV+NFEYR+P LH P  S E+   
Sbjct: 412 VPAEIVQVGVYRCWVSPHSPGFVNLYMSIDGHKPISQVVNFEYRTPALHDPAVSMEESDN 471

Query: 470 WEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDK 529
           W+EFQ+QMRLA+LLF     L+++S+KV PN LKEA++FA K++ ISNSW YL KS  D 
Sbjct: 472 WDEFQLQMRLAYLLFKQL-NLDVISTKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDN 530

Query: 530 RTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLF 589
           +    +AKD+ F + LKS+LKEWLLER+V G KTTEYD HGQ VIHLCA+LGYTWA+ LF
Sbjct: 531 QIPFSQAKDALFGIALKSRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYTWAVSLF 590

Query: 590 SWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
           SWSGLSLDFRD+ GWTALHWAAY GREKMV  LLSAGAKPNLVTDPT QNPGG  AAD+A
Sbjct: 591 SWSGLSLDFRDRSGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLA 650

Query: 650 SKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSA 709
             +G DGLAA+LSE++LV  FNDM+LAGNISGSL+T +T  V + NLTED+  LKDTL+A
Sbjct: 651 YMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVISANLTEDQQNLKDTLAA 710

Query: 710 YRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAA 769
           YRTAAEAA+RI AAFREHSLK++TKA+  S PE +A+ I+AA+KIQHAFRN + +K MAA
Sbjct: 711 YRTAAEAASRIHAAFREHSLKLRTKAVASSHPEAQARKIVAAMKIQHAFRNHKTKKVMAA 770

Query: 770 AARIQHRFRSWKVRKEFLNMRRQAIKIQVILLC 802
           AARIQ  +R+WK+RKEFLNMR QA+KIQ    C
Sbjct: 771 AARIQCTYRTWKIRKEFLNMRCQAVKIQAAFRC 803

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558139|ref|XP_003547365.1| PREDICTED: calmodulin-binding transcription activator 5-like [Glycine max]

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/807 (64%), Positives = 621/807 (76%), Gaps = 40/807 (4%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           LV +EIHGFHTL+DLDV+N MEEAK+RWLRPNEIHAILCN KYF IN KPVNLPKSGT+V
Sbjct: 10  LVSAEIHGFHTLEDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINVKPVNLPKSGTIV 69

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRKMLRNFRKDGHNWKKK DGKTVKEAHEHLKVGNEERIHVYYAHG+D+PTFVRRCYW
Sbjct: 70  LFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYW 129

Query: 125 LLDKTLENIVLVHYRETHE----GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSA 180
           LLDK LE+IVLVHYR+T E    G+PATP NS+SSS SD +A  + SE+ +SG   AY+ 
Sbjct: 130 LLDKNLEHIVLVHYRDTQELQLQGSPATPVNSNSSSASDPAASWIPSEDLDSGVNSAYAV 189

Query: 181 GGKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAI 240
              EL   N++LT ++HE RLHE+NTLEWDDLVV N  N ST   G    +  Q+N + +
Sbjct: 190 ---EL---NDNLTAKSHEQRLHEINTLEWDDLVVPN-VNTSTTSNGGNVPYSFQENQSLL 242

Query: 241 KGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQ 300
            G   N S  PS    AE+ S G LT   QP+  SN+  ++  D   S ++   S +SS 
Sbjct: 243 SGRFGNVSSNPS----AEIPSFGNLT---QPVSGSNSAPYSFPD---SAILLKNSPISS- 291

Query: 301 RNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGH----- 355
               G V   D+L  L  +GLQSQDSFG WMN I++D+P S+D+  L+ SISS H     
Sbjct: 292 ----GGV---DTLGTLVNEGLQSQDSFGTWMN-IISDTPCSIDESALKASISSVHVPYSS 343

Query: 356 -----HQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRV 410
                 Q ++PE +F++T+VSP WA S EKTK+LVTG+FH +  +L+KSN+ CVCG+V V
Sbjct: 344 LVADNLQSSLPEQVFNLTEVSPTWASSTEKTKVLVTGYFHNNYENLAKSNLLCVCGDVSV 403

Query: 411 PAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKW 470
           P E VQ GVYRC +PPHSPGL  LY+S DGHKPISQV+NFEYR+P LH P AS E+K  W
Sbjct: 404 PVEIVQVGVYRCCVPPHSPGLVNLYLSFDGHKPISQVVNFEYRTPILHEPTASMEEKYNW 463

Query: 471 EEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKR 530
            EF++QMRLAHLLF+S   LNI SSKV PN+LKEA++F+ K++ IS SW YL KS+ D  
Sbjct: 464 NEFRLQMRLAHLLFASDTSLNIFSSKVSPNALKEARRFSFKTSYISKSWQYLMKSIDDNT 523

Query: 531 TSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFS 590
               + KDS FE  LK+KLKEWLLER++ G K+TEYD  GQGVIHLCAMLGY+WAI LFS
Sbjct: 524 IPFSKVKDSLFETALKNKLKEWLLERIILGRKSTEYDAQGQGVIHLCAMLGYSWAISLFS 583

Query: 591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS 650
           WSGLSLDFRDK+GWTALHWAA YG EKMV  LLS GA+PNLVTDPT Q PGG  AAD+A 
Sbjct: 584 WSGLSLDFRDKFGWTALHWAASYGMEKMVATLLSCGARPNLVTDPTPQYPGGCTAADLAY 643

Query: 651 KKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAY 710
            KG DGLAAFLSE++LV QFN+M+LAGNISGSL+T ST  V+ +NLTED++Y+K+TL+AY
Sbjct: 644 MKGCDGLAAFLSEKSLVEQFNEMSLAGNISGSLETSSTDPVNAENLTEDQLYVKETLAAY 703

Query: 711 RTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAA 770
           R +AEAAARIQAAFREHS K++ KA+   SPEEEA+ I+AA++IQHAFRN+E +KKM AA
Sbjct: 704 RISAEAAARIQAAFREHSFKLRYKAVEIISPEEEARQIVAAMRIQHAFRNYESKKKMTAA 763

Query: 771 ARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
           ARIQHRFR+WK R+EFLNMR QAIKIQ
Sbjct: 764 ARIQHRFRTWKYRREFLNMRHQAIKIQ 790

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556328|ref|XP_002519198.1| calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis] gi|223541513|gb|EEF43062.1| calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/815 (63%), Positives = 630/815 (77%), Gaps = 45/815 (5%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           LVGS+IHGFHTL+DLD  N+M EA +RWLRPNEIHAILCN KYF+I+ KPV LP+     
Sbjct: 9   LVGSDIHGFHTLQDLDFGNIMAEATSRWLRPNEIHAILCNYKYFTIHVKPVKLPRKA--- 65

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
                  +NFRKDGHNWKKKKDGKT+KEAHEHLKVGNEERIHVYYAHGED+ TFVRRCYW
Sbjct: 66  -------KNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDNSTFVRRCYW 118

Query: 125 LLDKTLENIVLVHYRETHE--GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGG 182
           LLDKTLE+IVLVHYRET E  G+P TP NS+SSS+S   +P LLSE  +SG    Y +  
Sbjct: 119 LLDKTLEHIVLVHYRETQELQGSPVTPLNSNSSSVS-DQSPRLLSEA-DSGT---YVSDE 173

Query: 183 KELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGD-------KFSHFDQQ 235
           KELQ   +SLTV NHE+RLHE+NTLEWD+LV  + +N +T   GD       K   F QQ
Sbjct: 174 KELQG--DSLTVINHELRLHEINTLEWDELVTNDPNNSATAKEGDGLSIICYKIMGFAQQ 231

Query: 236 NHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQS 295
           N  A+ G+ +NG +   ++  AE+S    L +L++P+ RSN++ F+  D  Y +  G Q 
Sbjct: 232 NQIAVNGSMNNGRYLSPYNLSAEISP---LDNLTKPVVRSNDSHFSIPDNEYIQSTGVQV 288

Query: 296 SVSSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLE------- 348
           + + Q+     + TGD+LD+L  DGLQSQDSFG+W++YI+ DSPGSVD+ VLE       
Sbjct: 289 NSNVQQKGSNFLGTGDTLDMLVNDGLQSQDSFGRWIDYIIADSPGSVDNAVLESSFSSGL 348

Query: 349 -----PSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFC 403
                P+I     Q +VPE +F ITD+SPAWAFS E TKILV G+FH+  L L+KSNMFC
Sbjct: 349 DSSTSPAID--QLQSSVPEQIFVITDISPAWAFSTETTKILVVGYFHEQYLQLAKSNMFC 406

Query: 404 VCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVAS 463
           VCG+     + VQ GVYRC + PH PG+  L++SLDGHKPISQ++NFEYR+P LH PV S
Sbjct: 407 VCGDAYALVDIVQTGVYRCLVSPHFPGIVNLFLSLDGHKPISQLINFEYRAP-LHDPVVS 465

Query: 464 SEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLF 523
           SEDK+ WEEF++QMRLAHLLFS+ K L I +SKV   +LKEAKKF  K++ I  SWAYL 
Sbjct: 466 SEDKTNWEEFKLQMRLAHLLFSTSKSLGIQTSKVSSITLKEAKKFDHKTSNIHRSWAYLI 525

Query: 524 KSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYT 583
           K + D R S  +AKDS FELTLKS LKEWLLERVVEG KTTEYD  GQGVIHLC++LGYT
Sbjct: 526 KLIEDNRLSFSQAKDSLFELTLKSMLKEWLLERVVEGCKTTEYDAQGQGVIHLCSILGYT 585

Query: 584 WAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGL 643
           WA+ LFSWSGLSLDFRDK+GWTALHWAAYYGREKMV  LLSAGAKPNLVTDPT +NP G 
Sbjct: 586 WAVYLFSWSGLSLDFRDKHGWTALHWAAYYGREKMVAVLLSAGAKPNLVTDPTKENPDGC 645

Query: 644 NAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSL-QTGSTITVDTQNLTEDEVY 702
            AAD+AS KG+DGLAA+LSE+ALVA F DM++AGN SG+L QT +T  V+++NL+E+E+Y
Sbjct: 646 MAADLASMKGYDGLAAYLSEKALVAHFKDMSIAGNASGTLQQTSATDIVNSENLSEEELY 705

Query: 703 LKDTLSAYRTAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFE 762
           LKDTL+AYRTAA+AAARIQ+AFREHSLKV+T A++ ++PE+EA+ I+AA+KIQHA+RNFE
Sbjct: 706 LKDTLAAYRTAADAAARIQSAFREHSLKVRTTAVQSANPEDEARTIVAAMKIQHAYRNFE 765

Query: 763 VRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
            RKKMAAA RIQ+RFR+WK+RKEFLNMRRQ I+IQ
Sbjct: 766 TRKKMAAAVRIQYRFRTWKMRKEFLNMRRQVIRIQ 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834981|emb|CAN70197.1| hypothetical protein VITISV_010763 [Vitis vinifera]

 Score =  984 bits (2544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/809 (60%), Positives = 610/809 (75%), Gaps = 48/809 (5%)

Query: 17  KDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRK 76
           ++LDV +++EEAK RWLRPNEIHAILCN   F++N KPVNLP SG +VLFDR+MLRNFRK
Sbjct: 11  ENLDVDSILEEAKGRWLRPNEIHAILCNYTLFTVNVKPVNLPPSGKIVLFDRRMLRNFRK 70

Query: 77  DGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLV 136
           DGHNWKKK DGKTVKEAHEHLKVGN+ERIHVYYAHG+D+PTFVRRCYWLLDKTLE+IVLV
Sbjct: 71  DGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPTFVRRCYWLLDKTLEHIVLV 130

Query: 137 HYRETHE--GTPATPPNSH---SSSISDQSAPLLLSEEFNSGAGHAYSAGGKELQAPNES 191
           HYRET E  G+P TP NS    +S+ SD SAP LLSEE +SG G  Y AG KE Q P +S
Sbjct: 131 HYRETQESQGSPVTPVNSSPSPNSATSDPSAPWLLSEETDSGTGSTYRAGEKEHQEPRDS 190

Query: 192 LTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGA-------- 243
           +TV+N+EMR+HELNTLEWD+L+V+ND N+S  P+  K S F+QQN   I  +        
Sbjct: 191 ITVRNYEMRIHELNTLEWDELLVSNDPNNSMAPKEGKISSFEQQNQHVITSSNSYLMLKT 250

Query: 244 ASNGSFFPSHD-SYAEVSSG-GCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQR 301
            S+GS   +   S  ++  G   L + ++ I  + +  FN LD VY + +G Q + + QR
Sbjct: 251 KSDGSSLQNRPHSTNDLPVGISPLGNPAESIAGNESAHFNFLDDVYFQKIGGQVNPNGQR 310

Query: 302 NEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVL----------EPSI 351
            +   V TGD +DIL  D L+ QDSFG+WMNYIMTDSP SVDDP L            S 
Sbjct: 311 RDSVAVGTGDPVDILLKDSLEPQDSFGRWMNYIMTDSPVSVDDPSLGSPVSSSHDSVVSA 370

Query: 352 SSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVP 411
           +  H Q +VP+ +FSITD SP+WA S EKTKILV GF H++   L+KSN+F VCG+V VP
Sbjct: 371 AGNHQQSSVPDTIFSITDFSPSWAISTEKTKILVIGFLHENYADLAKSNLFFVCGDVCVP 430

Query: 412 AEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWE 471
           AE +Q GV+RC +PPH+PGL   Y+S DGHKPISQV+ FEYR+P L+    SSE ++ WE
Sbjct: 431 AEIIQLGVFRCLVPPHAPGLVNFYLSFDGHKPISQVVTFEYRAPLLYNQTVSSEVETNWE 490

Query: 472 EFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRT 531
           EFQ QMRL+HLLFS+ KGLNI+SSK+ PN+L+EAK F  K++ I+ +WA L K++GD R 
Sbjct: 491 EFQFQMRLSHLLFSTSKGLNIMSSKISPNALREAKNFVKKTSFIARNWANLTKTIGDNRI 550

Query: 532 SLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
            + +AKD  FE  L +KL+EWL+ER+VEG KT+Z D  GQGVIHLCAMLGYT A+ L+S 
Sbjct: 551 LVSQAKDLLFEFALLNKLQEWLVERIVEGGKTSZRDGQGQGVIHLCAMLGYTRAVYLYSL 610

Query: 592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           SGLSLD+RDK+GWTALHWAAYYGR+KMV  LLSAGAKPNLVTDPTS+NPGG  AAD+ASK
Sbjct: 611 SGLSLDYRDKFGWTALHWAAYYGRQKMVAVLLSAGAKPNLVTDPTSENPGGCTAADLASK 670

Query: 652 KGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYR 711
           +G DGLAA+L+E+ LV QFNDMTLAGN+SGSLQ  +T  ++++NL+E+E+ LKDTL+AYR
Sbjct: 671 EGHDGLAAYLAEKGLVEQFNDMTLAGNVSGSLQVSTTEQINSENLSEEEMNLKDTLAAYR 730

Query: 712 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAA 771
           TAA+AAA+I                       EA+NI+AA++IQHAFRN+E RK+MAAAA
Sbjct: 731 TAADAAAQI-----------------------EARNIVAAMRIQHAFRNYETRKRMAAAA 767

Query: 772 RIQHRFRSWKVRKEFLNMRRQAIKIQVIL 800
           RIQHRFRSWK+RKEFLNMRRQAIKIQ + 
Sbjct: 768 RIQHRFRSWKIRKEFLNMRRQAIKIQAVF 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532529|ref|XP_003534824.1| PREDICTED: calmodulin-binding transcription activator 5-like [Glycine max]

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/806 (64%), Positives = 619/806 (76%), Gaps = 36/806 (4%)

Query: 5   LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
           LVG+EIHGFHTL DLDV+N MEEAK+RWLRPNEIHAILCN KYF INAKPVNLPKSGT+V
Sbjct: 9   LVGAEIHGFHTLDDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINAKPVNLPKSGTIV 68

Query: 65  LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
           LFDRKMLRNFRKDGHNWKKK DGKTVKEAHEHLKVGNEERIHVYYAHG+D PTFVRRCYW
Sbjct: 69  LFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKPTFVRRCYW 128

Query: 125 LLDKTLENIVLVHYRETHE---GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAG 181
           LLDK+LE+IVLVHYR+T E    +PATP NS+SSS+SD +A  + S++ +SG+     + 
Sbjct: 129 LLDKSLEHIVLVHYRDTQEVRNCSPATPVNSNSSSVSDSAASWIPSDDLDSGSHITCLSS 188

Query: 182 GKELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIK 241
              L   N+SLT ++HE RLHE+NTLEWDDLVV+N +N ST   G    +  QQN + + 
Sbjct: 189 WDVL---NDSLTAKSHEQRLHEINTLEWDDLVVSN-ANTSTTSNGGNVPYSFQQNQSLLN 244

Query: 242 GAASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQSSVSSQR 301
           G+  N S  PS    AE+ S G LT L    D +  +   + D + S      S +SS  
Sbjct: 245 GSFGNVSSDPS----AEIPSFGNLTQLVSGSDSAPYSFPESADLLKS------SPLSS-- 292

Query: 302 NEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGH------ 355
              G V   D+L  L  +GLQSQDSFG WMN IM+D+P S+D+  LE + SS H      
Sbjct: 293 ---GGV---DTLGTLVNEGLQSQDSFGTWMN-IMSDTPCSIDESALEATTSSVHVPYSSL 345

Query: 356 ----HQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVP 411
                Q ++PE +F++T+VSP WA S EKTK+LVTG+FH +  HL+KSN+ CVCG+V VP
Sbjct: 346 VADNKQSSLPEQVFNLTEVSPVWASSTEKTKVLVTGYFHNNYQHLAKSNLLCVCGDVSVP 405

Query: 412 AEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWE 471
            E VQ GVYRC++ PHSPGL  LY+S DGHKPISQV+NFEYR+P LH P A  E+K  W+
Sbjct: 406 VEIVQVGVYRCWVSPHSPGLVTLYLSFDGHKPISQVVNFEYRTPILHEPTALIEEKYNWD 465

Query: 472 EFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRT 531
           EF++QMRLAHLLF+S K LNI SSKV  N+LKEA++F+ K++ IS SW +L KS+ DK  
Sbjct: 466 EFRLQMRLAHLLFASDKSLNIFSSKVSTNALKEARRFSFKTSYISKSWQHLMKSIDDKTI 525

Query: 532 SLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
              + KD+ FE +LK+KLKEWLLER++ GSK+TEYD  GQ  IHLCAMLGY WAI LF+W
Sbjct: 526 PFSQVKDALFETSLKNKLKEWLLERIILGSKSTEYDAQGQAAIHLCAMLGYNWAISLFTW 585

Query: 592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           SGLSLDFRDK+GWTALHWAAYYG EKMV  LLS GA+PNLVTDPT Q PGG  AAD+A  
Sbjct: 586 SGLSLDFRDKFGWTALHWAAYYGIEKMVATLLSCGARPNLVTDPTPQYPGGCTAADLAYV 645

Query: 652 KGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYR 711
           KG DGLAA+LSE++LV QFNDM+LAGNISGSL+T ST  V+  NLTED++YLK+TL AYR
Sbjct: 646 KGCDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSSTDPVNAANLTEDQLYLKETLEAYR 705

Query: 712 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAA 771
           TAAEAAARIQAAFREHS K++ +A+   SPEEEA+ I+AA++IQHAFRN+E +KKMAAAA
Sbjct: 706 TAAEAAARIQAAFREHSFKLRYQAVEIMSPEEEARQIVAAMRIQHAFRNYESKKKMAAAA 765

Query: 772 RIQHRFRSWKVRKEFLNMRRQAIKIQ 797
           RIQ RFR+WK R+EFLNMRRQAIKIQ
Sbjct: 766 RIQLRFRTWKYRREFLNMRRQAIKIQ 791

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501552|ref|XP_004161401.1| PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5-like [Cucumis sativus]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/802 (61%), Positives = 616/802 (76%), Gaps = 35/802 (4%)

Query: 13  FHTL-----KDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFD 67
           FH L      DLDV N+ EEA  RWLRPNEIHAILCN KYF+I+ KPVNLPKSGT+VLFD
Sbjct: 12  FHRLFDLLRADLDVENIREEASARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFD 71

Query: 68  RKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLD 127
           RKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGN ERIHVYYAHG DSPTFVRRCYWLLD
Sbjct: 72  RKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLD 131

Query: 128 KTLENIVLVHYRETHEGTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGGKELQA 187
           KTLE+IVLVHYRET E +P+T  NS+S S+S+ S P LLSEE +S A H YS G  EL  
Sbjct: 132 KTLEHIVLVHYRETQENSPSTSLNSNSGSVSNPSTPWLLSEELDSKATHVYSVGENELSE 191

Query: 188 PNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNG 247
           P+++ TV  HE RLHE+NTLEWDDL+V ++       +GDK S FDQQN   I  A SN 
Sbjct: 192 PSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAIHKGDKLSCFDQQNQVPI-NATSNL 250

Query: 248 SFFPSHDSYAEVSSGGCLTSLSQPIDRSNNTQFN-NLDGVYSELMGTQSSVSSQRNEFGE 306
                          G ++S S P++ +     N +  G  + L+G Q++++ ++ E   
Sbjct: 251 L--------------GEMSSFSNPVESTGRANGNISFTGSANLLLGGQTNLNVEKRESIA 296

Query: 307 VCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHH---------- 356
           +   +S D L  + LQSQDSFG+W+N ++ +SPGSV DP +EPSIS  H+          
Sbjct: 297 I---NSTDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISYVHNSYRDSTLYHS 353

Query: 357 QFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQ 416
           Q    E +F+ITDVSP+WAFS EKTKIL+ G+FH D +HL+KSN+  VCG+  V  +FVQ
Sbjct: 354 QTLATEQIFNITDVSPSWAFSTEKTKILIIGYFHNDFVHLAKSNLLVVCGDTSVNVDFVQ 413

Query: 417 AGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQ 476
            GVYRC +PPH+PGL  LY+S+DGHKPISQ LNFEYR+P L  PV +SE   KWEEFQ+Q
Sbjct: 414 PGVYRCLVPPHAPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQSQKWEEFQIQ 473

Query: 477 MRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEA 536
           MRLAH+LFS+ K L+I+S+K+ P +L+EAKK A K+  IS+SW YL KS+ + RT   +A
Sbjct: 474 MRLAHMLFSTSKILSIISTKLLPTALQEAKKLAVKTADISDSWIYLLKSITENRTPFQQA 533

Query: 537 KDSFFELTLKSKLKEWLLERVVEGSK-TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS 595
           ++   E+ L+S+L+EWL+ERV EG+K +TE+DV+GQGVIHLCA+LGYTWA+ LF W+GLS
Sbjct: 534 REGVLEIVLRSRLREWLIERVAEGAKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLS 593

Query: 596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 655
           ++FRDK+GWTALHWAAYYGRE+MV  LLSAGAKPNLVTDP+S+NP G  AAD+AS  G+D
Sbjct: 594 INFRDKFGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYD 653

Query: 656 GLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLTEDEVYLKDTLSAYRTAAE 715
           GLAA+LSE+ALV+ F +M+LAGN+SGSL T STIT  +  ++E+++Y+K+TL+AYRTAA+
Sbjct: 654 GLAAYLSEKALVSHFKEMSLAGNVSGSLDTSSTITDTSDCISEEQMYMKETLAAYRTAAD 713

Query: 716 AAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQH 775
           AA+RIQAAFRE+SLK ++  I  SSPE+EA++IIAA+KIQHA+RNFE RK MAAAARIQ+
Sbjct: 714 AASRIQAAFREYSLKQRSDRIELSSPEDEARSIIAAMKIQHAYRNFETRKXMAAAARIQY 773

Query: 776 RFRSWKVRKEFLNMRRQAIKIQ 797
           RFR+WK+RK+FLNMRRQ I+IQ
Sbjct: 774 RFRTWKIRKDFLNMRRQTIRIQ 795

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	805
TAIR|locus:2130125	923	AT4G16150 [Arabidopsis thalian	0.973	0.849	0.575	2.1e-257
TAIR|locus:2060405	1032	SR1 "signal responsive 1" [Ara	0.545	0.425	0.302	2.1e-84
TAIR|locus:2019534	1016	AT1G67310 [Arabidopsis thalian	0.530	0.420	0.324	4.2e-80
TAIR|locus:2173368	1050	AT5G64220 [Arabidopsis thalian	0.681	0.522	0.260	1.5e-79
UNIPROTKB|Q9Y6Y1	1673	CAMTA1 "Calmodulin-binding tra	0.149	0.071	0.408	1.1e-31
UNIPROTKB|J9NZ90	1214	CAMTA2 "Uncharacterized protei	0.139	0.092	0.410	1.3e-31
UNIPROTKB|F1RFY4	1201	CAMTA2 "Uncharacterized protei	0.139	0.093	0.410	1.6e-31
UNIPROTKB|E1BH04	1196	Bt.24734 "Uncharacterized prot	0.139	0.093	0.410	3.2e-31
UNIPROTKB|O94983	1202	CAMTA2 "Calmodulin-binding tra	0.139	0.093	0.410	1.4e-30
UNIPROTKB|F1P8J0	1204	CAMTA2 "Uncharacterized protei	0.139	0.093	0.410	3.5e-30

TAIR|locus:2130125 AT4G16150 [Arabidopsis thaliana (taxid:3702)]

 Score = 2432 (861.2 bits), Expect = 2.1e-257, Sum P(2) = 2.1e-257
 Identities = 465/808 (57%), Positives = 596/808 (73%)

Query:     5 LVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVV 64
             L+GSEIHGFHTL+DLD+  M++EA +RWLRPNEIHA+LCN K+F+IN KPVNLPKSGT+V
Sbjct:     9 LIGSEIHGFHTLQDLDIQTMLDEAYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIV 68

Query:    65 LFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYW 124
             LFDRKMLRNFRKDGHNWKKKKDGKT+KEAHEHLKVGNEERIHVYYAHGED+PTFVRRCYW
Sbjct:    69 LFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDTPTFVRRCYW 128

Query:   125 LLDKTLENIVLVHYRETHE--GTPATPPNSHSSSISDQSAPLLLSEEFNSGAGHAYSAGG 182
             LLDK+ E+IVLVHYRETHE    PATP NS+SSSI+D  +P +++E+ +SG  +  + G 
Sbjct:   129 LLDKSQEHIVLVHYRETHEVHAAPATPGNSYSSSITDHLSPKIVAEDTSSGVHNTCNTG- 187

Query:   183 KELQAPNESLTVQNHEMRLHELNTLEWDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKG 242
                +  + SL  +NHE+RLHE+NTL+WD+L+V  D ++ + P  +   +F +Q  TA +G
Sbjct:   188 --FEVRSNSLGSRNHEIRLHEINTLDWDELLVPADISNQSHPTEEDMLYFTEQLQTAPRG 245

Query:   243 AASNGSFFPSHDSYAEVSSGGCLTSLSQPIDRSNNT-QFNNLDGVYSELMGTQSSVSSQR 301
             +   G+    ++   ++ S      L  P+ ++NN+         +S   G   ++  QR
Sbjct:   246 SVKQGNHLAGYNGSVDIPS---FPGLEDPVYQNNNSCGAGEFSSQHSHC-GVDPNL--QR 299

Query:   302 NEFGEVCTGDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSG------- 354
              +F    T    D L  +G  SQDSFG+W+N  ++DSPGSVDDP LE   + G       
Sbjct:   300 RDFSATVTDQPGDALLNNGYGSQDSFGRWVNNFISDSPGSVDDPSLEAVYTPGQDSSTPP 359

Query:   355 ---HHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVP 411
                H    +PE +F+ITDVSPAWA+S EKTKILVTGFFH    HL +SN+ C+CGE+RVP
Sbjct:   360 TVFHSHSDIPEQVFNITDVSPAWAYSTEKTKILVTGFFHDSFQHLGRSNLICICGELRVP 419

Query:   412 AEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKS-KW 470
             AEF+Q GVYRCFLPP SPG+  LY+S+DG+KPISQ+ +FE+RS Q        +D+  KW
Sbjct:   420 AEFLQMGVYRCFLPPQSPGVVNLYLSVDGNKPISQLFSFEHRSVQFIEKAIPQDDQLYKW 479

Query:   471 EEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKR 530
             EEF+ Q+RLAHLLF+S   +++L+SK+ P +L EAKK AS+++ + NSWAYL KS+    
Sbjct:   480 EEFEFQVRLAHLLFTSSNKISVLTSKISPENLLEAKKLASRTSHLLNSWAYLMKSIQANE 539

Query:   531 TSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFS 590
                 +A+D  FELTLK++LKEWLLE+V+E   T EYD  G GVIHLCA+LGYTW+ILLFS
Sbjct:   540 VPFDQARDHLFELTLKNRLKEWLLEKVIENRNTKEYDSKGLGVIHLCAVLGYTWSILLFS 599

Query:   591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS 650
             W+ +SLDFRDK GWTALHWAAYYGREKMV  LLSAGA+PNLVTDPT +  GG  AAD+A 
Sbjct:   600 WANISLDFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTKEFLGGCTAADLAQ 659

Query:   651 KKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQT-GSTITVDTQNLTEDEVYLKDTLSX 709
             +KG+DGLAAFL+E+ LVAQF DM  AGNISG+L+T  +  + +  N  E+E  LKDTL+ 
Sbjct:   660 QKGYDGLAAFLAEKCLVAQFKDMQTAGNISGNLETIKAEKSSNPGNANEEEQSLKDTLAA 719

Query:   710 XXXXXXXXXXXXXXXXEHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAA 769
                             EH LKV++ A+RF+S EEEA+NIIAA+KIQHAFRNFEVR+K+AA
Sbjct:   720 YRTAAEAAARIQGAFREHELKVRSSAVRFASKEEEAKNIIAAMKIQHAFRNFEVRRKIAA 779

Query:   770 AARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
             AARIQ+RF++WK+R+EFLNMR++AI+IQ
Sbjct:   780 AARIQYRFQTWKMRREFLNMRKKAIRIQ 807

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2060405 SR1 "signal responsive 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.1e-84, Sum P(3) = 2.1e-84
 Identities = 140/463 (30%), Positives = 228/463 (49%)

Query:   337 DSPGSVDDPVLEPSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHL 396
             +S   +D  V+ PS+S         E LFSI D SP+WA+   +  + VTG F K     
Sbjct:   443 NSRRDMDGYVMSPSLSK--------EQLFSINDFSPSWAYVGCEVVVFVTGKFLKTREET 494

Query:   397 SKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQ 456
                   C+ G+  VPA+ +  G+ +C  P H  G    Y++       S+V  FEY+  +
Sbjct:   495 EIGEWSCMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCSNRLACSEVREFEYKVAE 554

Query:   457 LHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASK-STCI 515
                    ++D+S  +  +   R   LL S  K  N  +S V  N   +  + + K S  +
Sbjct:   555 SQVFDREADDESTIDILEA--RFVKLLCS--KSEN--TSPVSGND-SDLSQLSEKISLLL 607

Query:   516 SNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSK-TTEYDVHGQGVI 574
               +   L + + ++  S    K++  +  LK  L  WLL+++ EG K  +  D  GQGV+
Sbjct:   608 FENDDQLDQMLMNE-ISQENMKNNLLQEFLKESLHSWLLQKIAEGGKGPSVLDEGGQGVL 666

Query:   575 HLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTD 634
             H  A LGY WA+     +G+S+DFRD  GWTALHWAA++GRE+++  L++ GA P  +TD
Sbjct:   667 HFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRERIIGSLIALGAAPGTLTD 726

Query:   635 PTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ 694
             P    P G   +D+A   G  G+A +LSE AL A  + ++L    + +++   + +  + 
Sbjct:   727 PNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLNDKNAETVEMAPSPS--SS 784

Query:   695 NLTEDEVYLKDTLSXXXXXXXXXXXXXXXXXEHSLKVQTKAIRFSSPEEEAQNIIAALKI 754
             +LT+    +++  +                 +  LK +    +    EE A +++A  K 
Sbjct:   785 SLTDSLTAVRN--ATQAAARIHQVFRAQSFQKKQLK-EFGDKKLGMSEERALSMLAP-KT 840

Query:   755 QHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
               + R        AAA RIQ++FR +K RK++L  R++ IKIQ
Sbjct:   841 HKSGRAHSDDSVQAAAIRIQNKFRGYKGRKDYLITRQRIIKIQ 883

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2019534 AT1G67310 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 4.2e-80, Sum P(3) = 4.2e-80
 Identities = 145/447 (32%), Positives = 211/447 (47%)

Query:   365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFL 424
             F+I D+SP W ++NE TK+++ G F  D    ++S   C+ G  +VP E ++ GV RC  
Sbjct:   446 FTIQDISPDWGYANETTKVIIIGSFLCDP---TESTWSCMFGNAQVPFEIIKEGVIRCEA 502

Query:   425 PPHSPG-LFLLYMSLDGHKPISQVLNFEYRS-PQLHAPVASSEDKSKWEEFQVQMRLAHL 482
             P   PG + L   S DG    S++  FEYR  P    P  S    S       ++ L   
Sbjct:   503 PQCGPGKVNLCITSGDGLL-CSEIREFEYREKPDTCCPKCSEPQTSDMSTSPNELILLVR 561

Query:   483 LFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFE 542
                +   L+  SS+   N      K  +K     + W ++  ++ D   S     D   +
Sbjct:   562 FVQTL--LSDRSSERKSNLESGNDKLLTKLKADDDQWRHVIGTIIDGSASSTSTVDWLLQ 619

Query:   543 LTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK 601
               LK KL  WL  R   E   T       QG+IH+ A LG+ WA       G+++DFRD 
Sbjct:   620 ELLKDKLDTWLSSRSCDEDYITCSLSKQEQGIIHMVAGLGFEWAFYPILAHGVNVDFRDI 679

Query:   602 YGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
              GW+ALHWAA +G EKMV  L+++GA    VTDP+ Q+P G  AA IA+  G  GLA +L
Sbjct:   680 KGWSALHWAAQFGSEKMVAALIASGASAGAVTDPSRQDPNGKTAASIAASNGHKGLAGYL 739

Query:   662 SEQALVAQFNDMTLA----GNISGSLQTGSTI-TVDTQNLT--EDEVYLKDTLSXXXXXX 714
             SE AL    + +TL        +  +QT  T+ ++  Q+ +  ED+V LKDTL+      
Sbjct:   740 SEVALTNHLSSLTLEETENSKDTAQVQTEKTLNSISEQSPSGNEDQVSLKDTLAAVRNAA 799

Query:   715 XXXXXXXXXXXEHSLKV--QTKAIRFSSPEEEAQNI--IAALKIQHAFRNFEVRKKMAAA 770
                         HS +   Q +A   +  +E       I  +         + R   +AA
Sbjct:   800 QAAARIQAAFRAHSFRKRKQREAALVACLQEYGMYCEDIEGISAMSKLTFGKGRNYNSAA 859

Query:   771 ARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
               IQ  FR +K RK FL +R++ +KIQ
Sbjct:   860 LSIQKNFRGYKDRKCFLELRQKVVKIQ 886

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2173368 AT5G64220 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 154/591 (26%), Positives = 262/591 (44%)

Query:   236 NHTAIKGAASNGSFFP-SHDSYAEVSSGGCLTSLSQPIDRSNNTQFNNLDGVYSELMGTQ 294
             +H+ +  A     F   +H+++   SS   L S  Q    S    F N +  Y   +G +
Sbjct:   324 SHSGMTDATDLALFGQGAHENFGTFSS--LLGSQDQQ-SSSFQAPFTNNEAAYIPKLGPE 380

Query:   295 SSV-SSQRNEFGEVCTGDSLDILAGDGLQSQDSFGKWMN--------YIMTDSPGSVDDP 345
               +  +  N+   +    +L +   D L+  DSF +W++          M  S G +   
Sbjct:   381 DLIYEASANQ--TLPLRKAL-LKKEDSLKKVDSFSRWVSKELGEMEDLQMQSSSGGIAWT 437

Query:   346 VLE---PSISSGHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMF 402
              +E    +  S        +  F++ D  P W  ++ + +++V G F      ++  +  
Sbjct:   438 SVECENAAAGSSLSPSLSEDQRFTMIDFWPKWTQTDSEVEVMVIGTFLLSPQEVTSYSWS 497

Query:   403 CVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVA 462
             C+ GEV VPA+ +  GV  C  PPH  G    Y++       S+V  F++         A
Sbjct:   498 CMFGEVEVPADILVDGVLCCHAPPHEVGRVPFYITCSDRFSCSEVREFDFLPGSTRKLNA 557

Query:   463 SSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYL 522
             +    +   E  + +R  +LL  + +  ++    +  N + E ++  SK   + +     
Sbjct:   558 TDIYGANTIETSLHLRFENLL--ALR-CSVQEHHIFEN-VGEKRRKISKIMLLKDEKEPP 613

Query:   523 FKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEY-DVHGQGVIHLCAMLG 581
                  +K  +  EAK+       + KL  WL+ +V E  K     D  GQGV+HL A LG
Sbjct:   614 LPGTIEKDLTELEAKERLIREEFEDKLYLWLIHKVTEEGKGPNILDEDGQGVLHLAAALG 673

Query:   582 YTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPG 641
             Y WAI     +G+S++FRD  GW+ALHWAA+ GRE  V  L+S GA    + DP+ ++P 
Sbjct:   674 YDWAIKPILAAGVSINFRDANGWSALHWAAFSGREDTVAVLVSLGADAGALADPSPEHPL 733

Query:   642 GLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTG---STITVDTQNLTE 698
             G  AAD+A   G  G++ FL+E +L +    +T+    + S  +    + +TV  +  T 
Sbjct:   734 GKTAADLAYGNGHRGISGFLAESSLTSYLEKLTVDAKENSSADSSGAKAVLTVAERTATP 793

Query:   699 -------DEVYLKDTLSXXXXXXXXXXXXXXXXXEHSL-KVQTKAI----RFSSPEEEAQ 746
                    + + +KD+L+                   S  + Q   +    +F   +E A 
Sbjct:   794 MSYGDVPETLSMKDSLTAVLNATQAADRLHQVFRMQSFQRKQLSELGGDNKFDISDELAV 853

Query:   747 NIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
             +  AA   +    +  V    AAA +IQ ++R WK RKEFL +R++ +KIQ
Sbjct:   854 SFAAAKTKKSGHSSGAVH---AAAVQIQKKYRGWKKRKEFLLIRQRIVKIQ 901

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q9Y6Y1 CAMTA1 "Calmodulin-binding transcription activator 1" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
 Identities = 51/125 (40%), Positives = 74/125 (59%)

Query:    16 LKDLDVANMMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRN 73
             L+ L   + + + + RW    EI A L    K+   +   P   P++G+++L++RK ++ 
Sbjct:    58 LECLPKCSSLPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVK- 116

Query:    74 FRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENI 133
             +RKDG+ WKK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +I
Sbjct:   117 YRKDGYCWKKRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQNP--DI 174

Query:   134 VLVHY 138
             VLVHY
Sbjct:   175 VLVHY 179

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J9NZ90 CAMTA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
 Identities = 48/117 (41%), Positives = 71/117 (60%)

Query:    24 MMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 81
             ++   + RW    EI + L    K+   ++  P   P++G+++L++RK ++ +RKDG+ W
Sbjct:    56 LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK-YRKDGYLW 114

Query:    82 KKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY 138
             KK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +IVLVHY
Sbjct:   115 KKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DIVLVHY 169

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RFY4 CAMTA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 1.6e-31, Sum P(4) = 1.6e-31
 Identities = 48/117 (41%), Positives = 71/117 (60%)

Query:    24 MMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 81
             ++   + RW    EI + L    K+   ++  P   P++G+++L++RK ++ +RKDG+ W
Sbjct:    33 LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK-YRKDGYLW 91

Query:    82 KKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY 138
             KK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +IVLVHY
Sbjct:    92 KKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DIVLVHY 146

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BH04 Bt.24734 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
 Identities = 48/117 (41%), Positives = 71/117 (60%)

Query:    24 MMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 81
             ++   + RW    EI + L    K+   ++  P   P++G+++L++RK ++ +RKDG+ W
Sbjct:    33 LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK-YRKDGYLW 91

Query:    82 KKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY 138
             KK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +IVLVHY
Sbjct:    92 KKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DIVLVHY 146

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O94983 CAMTA2 "Calmodulin-binding transcription activator 2" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
 Identities = 48/117 (41%), Positives = 71/117 (60%)

Query:    24 MMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 81
             ++   + RW    EI + L    K+   ++  P   P++G+++L++RK ++ +RKDG+ W
Sbjct:    33 LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK-YRKDGYLW 91

Query:    82 KKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY 138
             KK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +IVLVHY
Sbjct:    92 KKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DIVLVHY 146

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IGI

GO:0014898 "cardiac muscle hypertrophy in response to stress" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P8J0 CAMTA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 3.5e-30, Sum P(4) = 3.5e-30
 Identities = 48/117 (41%), Positives = 71/117 (60%)

Query:    24 MMEEAKTRWLRPNEIHAILCN-SKYFS-INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNW 81
             ++   + RW    EI + L    K+   ++  P   P++G+++L++RK ++ +RKDG+ W
Sbjct:    33 LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVK-YRKDGYLW 91

Query:    82 KKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHY 138
             KK+KDGKT +E H  LKV   E ++  Y H    PTF RRCYWLL     +IVLVHY
Sbjct:    92 KKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNP--DIVLVHY 146

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23463	CMTA5_ARATH	No assigned EC number	0.5947	0.9751	0.8504	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	805
pfam03859	119	pfam03859, CG-1, CG-1 domain	1e-61
smart01076	118	smart01076, CG-1, CG-1 domains are highly conserve	8e-58
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
pfam01833	84	pfam01833, TIG, IPT/TIG domain	3e-05
smart00248	30	smart00248, ANK, ankyrin repeats	9e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.004

>gnl|CDD|217766 pfam03859, CG-1, CG-1 domain

 Score =  202 bits (516), Expect = 1e-61
 Identities = 73/119 (61%), Positives = 92/119 (77%)

Query: 24  MMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKK 83
           ++ EAK+RWLRP EI+AIL N +   I  +P   P SG++ L++RK++R FRKDG+NWKK
Sbjct: 1   LLPEAKSRWLRPEEIYAILQNFEKHFITLEPPTRPPSGSLFLYNRKVVRYFRKDGYNWKK 60

Query: 84  KKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETH 142
           KKDGKT +EAHE LKVG  E ++ YYAHGED+PTF RRCYWLLD+ LE+IVLVHY    
Sbjct: 61  KKDGKTTREAHEKLKVGGVEVLNCYYAHGEDNPTFQRRCYWLLDEDLEHIVLVHYLNVK 119

CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs. Length = 119

>gnl|CDD|198144 smart01076, CG-1, CG-1 domains are highly conserved domains of about 130 amino-acid residues

 Score =  192 bits (489), Expect = 8e-58
 Identities = 69/119 (57%), Positives = 81/119 (68%), Gaps = 4/119 (3%)

Query: 25  MEEAKTRWLRPNEIHAILCNSKYFS--INAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWK 82
           + EAK RWL P EI AIL N    +  +   P   PKSG++ LF+RK L+ FRKDG+NWK
Sbjct: 1   LPEAKHRWLTPEEIAAILINFDKHTEWLTTSPPTRPKSGSLFLFNRKKLKYFRKDGYNWK 60

Query: 83  KKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRET 141
           KKKDGKTV+E HE LKVG  E +H YYAH E +PTF RRCYWLL     +IVLVHY   
Sbjct: 61  KKKDGKTVREDHEKLKVGGIECLHCYYAHSEINPTFHRRCYWLLQ--NPDIVLVHYLNV 117

The domains contain a predicted bipartite NLS and are named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs. Length = 118

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHW 609
           + LLE    G+     D  G+  +HL A  G+   + LL    G  ++ RDK G T LH 
Sbjct: 24  KLLLEN---GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHL 79

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           AA  G   +V  LL  GA  N       ++  G     +A+K G   +   L
Sbjct: 80  AARNGNLDVVKLLLKHGADVNA------RDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 574 IHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLV 632
           +HL A  G    + LL    G  ++ +DK G TALH AA  G  ++V  LL  GA  NL 
Sbjct: 32  LHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 602 YGWTALHWAAYYGREKMVVDLLSAGAKPNLVTD 634
            G T LH AA  G  ++V  LL AGA  N    
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 656
           + RD+ G T LH AA  G  ++V  LL  GA  N       ++  G     +A+K G   
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA------KDNDGRTPLHLAAKNGHLE 54

Query: 657 LAAFL 661
           +   L
Sbjct: 55  IVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
           + LLE+   G+     D  G   +HL A  G    + L    G  ++ RDK G T LH A
Sbjct: 57  KLLLEK---GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113

Query: 611 AYYGREKMVVDLL 623
           A  G  ++V  LL
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.9 bits (125), Expect = 9e-07
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 555 ERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW--SGLSLDFRDKYGWTALHWAAY 612
           E +  G      D+ G   +H  A        L+     +G+S++ R++YG T LH+AA 
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266

Query: 613 YGREKMVVDLLSAGAKPNLVTD 634
           +   +    L++ GA  N V+ 
Sbjct: 267 FNNPRACRRLIALGADINAVSS 288

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 37/112 (33%), Positives = 46/112 (41%), Gaps = 14/112 (12%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAI------LLFSWSGLSLDF--RDKYGWTALHWAA 611
           G+     D  G   +HL A+ G           LL            RD+ G T LHWAA
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             G   +V  LL AGA      DP S+N  G+ A D A+K G   L   L +
Sbjct: 156 LNGDADIVELLLEAGA------DPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 633
           +HL A  G    + L    G  ++  D    TALH AA  G  ++V  LL  GA  N   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVN--- 55

Query: 634 DPTSQNPGGLNAADIASKKGFDGLAAFL 661
              +++  G  A  +A++ G   +   L
Sbjct: 56  ---AKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFC-VCGEVRVPAEFVQAGVYRCFL 424
            IT +SPA   ++  T I +TG            +      G        V +    C  
Sbjct: 2   VITSISPATGPASGGTTITITG----SNFGTDSEDTKVTFGGTECTVIVSVSSTQIVCTT 57

Query: 425 PPHSPGLFLLYMSLDGHKPISQVLNFEY 452
           P  + G   + ++++G    S  + F Y
Sbjct: 58  PAGAAGTVSVSVTVNGGL-SSSPVTFTY 84

This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members. Length = 84

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 602 YGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
            G T LH AA  G  ++V  LL  GA  N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 2e-04
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 10/151 (6%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA-SK 651
           G  ++ +D Y  T +H+AA  G  KMV  LLS GA  N++          L+  + A   
Sbjct: 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA------LDDLSVLECAVDS 221

Query: 652 KGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQ-NLTEDEVYLKDTLSAY 710
           K  D + A +  ++ + + ND++L   I       S +  D   ++   +   K+T   +
Sbjct: 222 KNIDTIKAIIDNRSNINK-NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDC-KNTPLHH 279

Query: 711 RTAAEAAARIQAAFREHSLKVQTKAIRFSSP 741
            + A + +R+     E    V  K I+  +P
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETP 310

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 573 VIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL 623
            +H  A+ G    +      G+ ++  D+ G TALH AA  G  +++  LL
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 602 YGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            G T LH AA  G  ++V  LL  GA  N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           G TALH AA  GR ++V  LL  G   N   +       G  A  IA++ G   +   L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE------DGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 595 SLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
            L+  D  G T LH AA YG  ++V  LL  G   NL      ++  GL A D+A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL------RDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 0.004
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 502 LKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGS 561
           L            +  S     K       +L     +     L   + +  L       
Sbjct: 16  LDLLLVALLLLLSLDLSNPSDKKLNLYLELAL--LPAASLSELLLKLIVDRHLA------ 67

Query: 562 KTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM--- 618
                D+ G+  +H  A  G    + L   SG  ++ +D  G T LH AA  G       
Sbjct: 68  ---ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI 124

Query: 619 -VVD-LLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
            V   LL AGA  +       ++  G      A+  G   +   L
Sbjct: 125 EVAKLLLEAGADLD---VNNLRDEDGNTPLHWAALNGDADIVELL 166

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	805
KOG0520	975	consensus Uncharacterized conserved protein, conta	100.0
PF03859	118	CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domain	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.87
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.84
PHA02791	284	ankyrin-like protein; Provisional	99.8
PHA02791	284	ankyrin-like protein; Provisional	99.78
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02875	413	ankyrin repeat protein; Provisional	99.78
PHA02859	209	ankyrin repeat protein; Provisional	99.76
PHA02875	413	ankyrin repeat protein; Provisional	99.75
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.75
PHA02741	169	hypothetical protein; Provisional	99.75
PHA03100	480	ankyrin repeat protein; Provisional	99.74
PHA02878	477	ankyrin repeat protein; Provisional	99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.73
PHA02874	434	ankyrin repeat protein; Provisional	99.73
PHA02878	477	ankyrin repeat protein; Provisional	99.73
PHA03095	471	ankyrin-like protein; Provisional	99.72
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.72
PHA03100	480	ankyrin repeat protein; Provisional	99.72
KOG0508	615	consensus Ankyrin repeat protein [General function	99.72
PHA02798	489	ankyrin-like protein; Provisional	99.72
PHA02874	434	ankyrin repeat protein; Provisional	99.71
PHA02876	682	ankyrin repeat protein; Provisional	99.7
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.7
KOG0508	615	consensus Ankyrin repeat protein [General function	99.7
PHA02859	209	ankyrin repeat protein; Provisional	99.69
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.68
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.68
PHA03095	471	ankyrin-like protein; Provisional	99.68
PHA02946	446	ankyin-like protein; Provisional	99.68
PHA02989	494	ankyrin repeat protein; Provisional	99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.68
PHA02795	437	ankyrin-like protein; Provisional	99.68
PHA02946	446	ankyin-like protein; Provisional	99.67
PHA02876	682	ankyrin repeat protein; Provisional	99.66
PHA02989	494	ankyrin repeat protein; Provisional	99.65
KOG0510	929	consensus Ankyrin repeat protein [General function	99.65
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.65
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.64
PHA02798	489	ankyrin-like protein; Provisional	99.64
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.62
KOG0514	452	consensus Ankyrin repeat protein [General function	99.61
PHA02917	661	ankyrin-like protein; Provisional	99.61
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
PHA02917	661	ankyrin-like protein; Provisional	99.59
KOG0514	452	consensus Ankyrin repeat protein [General function	99.59
PHA02795	437	ankyrin-like protein; Provisional	99.58
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.58
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
PHA02730	672	ankyrin-like protein; Provisional	99.56
PHA02741	169	hypothetical protein; Provisional	99.56
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.54
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.53
cd01175	85	IPT_COE IPT domain of the COE family (Col/Olf-1/EB	99.52
KOG0510	929	consensus Ankyrin repeat protein [General function	99.5
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.5
PHA02743	166	Viral ankyrin protein; Provisional	99.5
PHA02792	631	ankyrin-like protein; Provisional	99.49
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
PHA02884	300	ankyrin repeat protein; Provisional	99.47
PHA02730	672	ankyrin-like protein; Provisional	99.47
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
PHA02736	154	Viral ankyrin protein; Provisional	99.42
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.41
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.41
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
PHA02792	631	ankyrin-like protein; Provisional	99.37
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.3
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.28
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.24
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.24
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.24
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.22
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.14
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.14
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.06
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.04
PF01833	85	TIG: IPT/TIG domain; InterPro: IPR002909 This fami	99.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.99
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.98
cd01179	85	IPT_plexin_repeat2 Second repeat of the IPT domain	98.97
cd00102	89	IPT Immunoglobulin-like fold, Plexins, Transcripti	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.82
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.66
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.6
cd00603	90	IPT_PCSR IPT domain of Plexins and Cell Surface Re	98.57
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.54
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.48
cd01180	94	IPT_plexin_repeat1 First repeat of the IPT domain	98.46
PF13606	30	Ank_3: Ankyrin repeat	98.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.44
smart00429	90	IPT ig-like, plexins, transcription factors.	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.33
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.29
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.27
PF13606	30	Ank_3: Ankyrin repeat	98.26
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.26
KOG0522	560	consensus Ankyrin repeat protein [General function	98.19
cd01181	99	IPT_plexin_repeat3 Third repeat of the IPT domain	98.1
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.09
cd02849	81	CGTase_C_term Cgtase (cyclodextrin glycosyltransfe	98.07
KOG2384	223	consensus Major histocompatibility complex protein	98.03
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.83
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.82
KOG0511	516	consensus Ankyrin repeat protein [General function	97.76
KOG2384	223	consensus Major histocompatibility complex protein	97.72
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.67
cd00604	81	IPT_CGTD IPT domain (domain D) of cyclodextrin gly	97.6
KOG0511	516	consensus Ankyrin repeat protein [General function	97.37
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.31
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.21
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.17
KOG2505	591	consensus Ankyrin repeat protein [General function	96.76
PTZ00014	821	myosin-A; Provisional	96.61
KOG3836	605	consensus HLH transcription factor EBF/Olf-1 and r	96.34
smart00015	26	IQ Short calmodulin-binding motif containing conse	96.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.1
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.05
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.28
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	95.23
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	94.88
cd00602	101	IPT_TF IPT domain of eukaryotic transcription fact	94.87
KOG3610	1025	consensus Plexins (functional semaphorin receptors	94.85
KOG2505	591	consensus Ankyrin repeat protein [General function	94.84
cd01178	101	IPT_NFAT IPT domain of the NFAT family of transcri	94.42
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	93.58
cd01176	97	IPT_RBP-Jkappa IPT domain of the recombination sig	93.43
PF08549	669	SWI-SNF_Ssr4: Fungal domain of unknown function (D	93.18
cd01177	102	IPT_NFkappaB IPT domain of the transcription facto	92.91
COG5022	1463	Myosin heavy chain [Cytoskeleton]	91.5
smart00015	26	IQ Short calmodulin-binding motif containing conse	87.35
PTZ00014	821	myosin-A; Provisional	82.62
COG5022	1463	Myosin heavy chain [Cytoskeleton]	82.1

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=100.00  E-value=1e-123  Score=1082.81  Aligned_cols=784  Identities=38%  Similarity=0.599  Sum_probs=559.7

Q ss_pred             CccccccccccCCCCCchhhHHHHHHHHHHhcCChhHHHHHHhcCccceeccCCCCCCCCccEEeeehhhhhcccccCcc
Q 003660            1 MAELLVGSEIHGFHTLKDLDVANMMEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHN   80 (805)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~r~~~~~~~~dg~~   80 (805)
                      +++++..++++.|.+.+.||+..|++|+++|||+|+||++||+||++|.|+++||+||.|||+||||||+|||||||||+
T Consensus         5 ~~n~~~is~~l~~~sl~~l~~~~ll~~~~~rWl~~~EI~~il~n~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~   84 (975)
T KOG0520|consen    5 SSNRHIISIILPFKSLQDLDIQTLLPEAKSRWLTPEEILAILINHEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHN   84 (975)
T ss_pred             cccccccceeechhhhhhhhhhhhhHHHHhccCChHHHHHHHhcccccccccCCCCCCCCCceeeeccHHHHHHhhcchh
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCchhhhhhhcccCCEeeEEEEeeecCCCCcceeeEeecccCCCCceEEEeccccCCCCCC----C----CCCC
Q 003660           81 WKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETHEGTPA----T----PPNS  152 (805)
Q Consensus        81 w~~~~~~~~~~e~~~~lk~~~~~~~~~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvhy~~~~~g~~~----~----~~~~  152 (805)
                      |||||||||||||||||||||+|+||||||||+++||||||||||||+.++||||||||||++.+..    .    ++.+
T Consensus        85 WkKkkDGKtirEaHe~LKvg~~~~l~~~Y~Hg~~~ptF~RRcYwllq~~~~hIVLVHYl~v~~~~~~~~~~~~~~~s~~s  164 (975)
T KOG0520|consen   85 WKKKKDGKTIREAHEKLKVGGVEVLHCYYAHGEINPTFQRRCYWLLQQELEHIVLVHYLNVKGNEDAAKGAGEIFSSIIS  164 (975)
T ss_pred             hhhcCCCCcChHHHHhhccCCccceeeeeecccccchHHHHHHHhhccccCceEEEEEeecccccccccCcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999984321    1    1111


Q ss_pred             CCC-C---CCCCCCCcc-----cccccCCCCCCcCCCCCccccCCCCCccccccccccccccccc-cccccccCCCCCCC
Q 003660          153 HSS-S---ISDQSAPLL-----LSEEFNSGAGHAYSAGGKELQAPNESLTVQNHEMRLHELNTLE-WDDLVVTNDSNDST  222 (805)
Q Consensus       153 ~~~-~---~~~~~~~~~-----~~~~~~s~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  222 (805)
                      +.. +   ...++++++     ..+++++..+.+    .+.......+ ...+|...+++.++.+ |..++.+.++....
T Consensus       165 d~~~S~~~~~~q~~~~~~~~~s~~~~v~~i~s~~----~~~~~g~~~~-~s~~h~i~~~~~~s~~~~~~~p~s~~s~~~~  239 (975)
T KOG0520|consen  165 DKAWSLNQLAGQLSPIFHNHSSVNEDVAEINSNQ----TGNALGSVFG-NSRNHRIRLHEVNSLDPLYKLPVSDDSLNLS  239 (975)
T ss_pred             cccccHHHhhcccCcchhcccchHHHHHHHhhhc----cccccccccC-cchhhhhcccccCCccccccccccCCccccc
Confidence            110 0   111222211     112222221100    0000001111 1235666777776665 77776654432222


Q ss_pred             CCCCCCCccccccccccccCCCCCCCCCCCCCCcc-cccCCCCc-CCCCCCccCCCC--------ccccCCccccccccc
Q 003660          223 EPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYA-EVSSGGCL-TSLSQPIDRSNN--------TQFNNLDGVYSELMG  292 (805)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  292 (805)
                      .+....+   .+.....-..+.++........... +....++. ....+.+.+..+        +....++...+...+
T Consensus       240 ~~~~~~~---~~~~~~~~~rs~~~s~~te~l~n~~~~~~~~g~s~s~~l~~i~~~~~~~~~~~~~p~~~nf~~~ss~~s~  316 (975)
T KOG0520|consen  240 APKPIDL---PKGPTSVKQRSSSPSYFTEILGNAPSGLVSQGNSLSSSLQRISSFTGLDNAAYEQPNSQNFEPNSSLNSH  316 (975)
T ss_pred             cCCCccc---ccCCcchhhcCCCCcchhhhcccCCCcccccccccccchhhcccccccccccccCCccccccccccCCCC
Confidence            2211110   0000000000000000000000000 00000000 000111100000        000000001111100


Q ss_pred             cccc--cccccccCCcccCCC-c----cc-ccccCCCCCcchhhhhhhhhhCCCCCC-------CC----CCCCCCCCCC
Q 003660          293 TQSS--VSSQRNEFGEVCTGD-S----LD-ILAGDGLQSQDSFGKWMNYIMTDSPGS-------VD----DPVLEPSISS  353 (805)
Q Consensus       293 ~~~~--~~~~~~~~~~~~~~~-~----~~-~~~~~~~~~~~sf~~w~~~~~~~~~~~-------~~----~~~~~~~~~~  353 (805)
                      ..+.  ....+.++++....+ .    .+ .+.++++++.|+|.+||+.....+...       .-    +++.++.+  
T Consensus       317 ~~~~~~g~g~~~~~~sa~~~~~P~~~~~~~~~~~~~l~sgdsf~~~~~t~~e~~d~~q~~s~~~~~~p~~~~~~~~~s--  394 (975)
T KOG0520|consen  317 VTGQSYGQGLQARSPSATSESRPITSAADAALSELGLKSGDSFSRWASTFGEISDLGQDPSGEAVWTPENDPMGPPGS--  394 (975)
T ss_pred             ccccccCccccCCCcccccccCCcchhhccccccccccccccccchhhhhcccccCCCCCccccccccCCCcCCCccc--
Confidence            0000  000111222211111 1    22 356889999999999999743322211       11    11122222  


Q ss_pred             CCCCCCCCCcceeeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCCCCCeeE
Q 003660          354 GHHQFTVPEHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFL  433 (805)
Q Consensus       354 ~~~~s~~~~~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph~~G~V~  433 (805)
                      ..+|| +++|+|+|+||||+|+|++||+||+|+|++.    +.+..+|+||||+++|||++|++||||||||||.||.|+
T Consensus       395 ~~~~S-~p~qlf~I~DfSP~Wsy~~ggvKVlV~G~~~----~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~  469 (975)
T KOG0520|consen  395 FLSPS-SPEQLFTITDFSPEWSYLDGGVKVLVTGFPQ----DETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVN  469 (975)
T ss_pred             ccCCC-CCcceeeeeccCcccccCCCCcEEEEecCcc----ccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEE
Confidence            34555 3499999999999999999999999999733    335899999999999999999999999999999999999


Q ss_pred             EEEEeC-CCCccccccccccCCCC--cccCCCCccccchhhHHHHHHHHHHHHhccccccccccCCCCCCchHHHhh--h
Q 003660          434 LYMSLD-GHKPISQVLNFEYRSPQ--LHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKK--F  508 (805)
Q Consensus       434 l~v~~~-n~~~~se~~~Feyr~~~--~~~~~~~~~~~~~~~el~l~~Rl~~ll~~~~~~lqil~~k~~~~~l~d~~~--~  508 (805)
                      |||+|+ ++..|+++++|+|...+  .+++.+   -++...++.++.||..++....   +++.++..+....+...  +
T Consensus       470 l~V~c~~~~~~~se~ref~~~~~~~~~~d~~s---~~d~~~~~sl~~rl~~~~~r~~---~~~~s~~~~~n~~~~~~~~l  543 (975)
T KOG0520|consen  470 LQVTCRISGLACSEVREFAYLVQPSQQIDKLS---WEDFLFQMSLLHRLETMLNRKQ---SILSSKPSTENTSDAESGNL  543 (975)
T ss_pred             EEEEecccceeeeeehheeecccCcccccccc---cccchhhhHHHHHHHHHHHHhH---hHhhccCCccccccccchhH
Confidence            999999 89999999999999743  223222   1122345566666666654222   35566777777777776  8


Q ss_pred             hhhhhcccCCHHH-HHHHhCCCCCCcccccchHHHHHHcCCcHHHHHHHHHc--CCCCCccCCCCChHHHHHHHcCCHHH
Q 003660          509 ASKSTCISNSWAY-LFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWA  585 (805)
Q Consensus       509 a~~i~~~~~~~~~-li~~l~~~~~~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~--Gadin~~D~~G~T~LH~Aa~~G~~~~  585 (805)
                      +.+++...+.|.+ +++....+.......+..++...++..+..||++.+++  |......|.+|+..+|++|..|+.++
T Consensus       544 ~skv~~l~~~~~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA  623 (975)
T KOG0520|consen  544 ASKVVHLLNEWAYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWA  623 (975)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCcee
Confidence            8999999999999 88888777777776666777666777778999999999  55566699999999999999999999


Q ss_pred             HHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          586 ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       586 v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      +.+.+..|..++.+|.+||||||||+.+||..++..|++.|++.+++|||+..+..|.|+.++|..+|+.++..+|.++.
T Consensus       624 ~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~  703 (975)
T KOG0520|consen  624 FLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKA  703 (975)
T ss_pred             EEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhH
Confidence            98888999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccCcccccccc-ccccccccccchhhcccC---CcchhhhhhhhHHHHHhHHHHHHHHHHHHhhhhHHHHHHH-hhcCC
Q 003660          666 LVAQFNDMTLAG-NISGSLQTGSTITVDTQN---LTEDEVYLKDTLSAYRTAAEAAARIQAAFREHSLKVQTKA-IRFSS  740 (805)
Q Consensus       666 a~~~~~~~~l~~-~i~~~~~~~~~~~~~~~~---~~~~~~slkd~LaA~r~Aa~aA~~iQ~afR~~s~r~R~q~-~~~~~  740 (805)
                      +..++.++.+.+ +++.......+.......   -..+..+|+|.|+|+|+|++||+|||.+||+..++++... +..+.
T Consensus       704 L~~~~~~~~~~~~~~s~~~~~~~~~~t~~e~s~~~~~~~~sl~Dtl~avrdAa~aa~r~q~vfr~~~~~~~~a~~i~~~~  783 (975)
T KOG0520|consen  704 LSAHLSNLELADPNLSADSEEDKAEKTSSEGSPNPDEDSDSLKDTLAAVRDAAQAAARIQAVFRAQSFQKKQAREIMDAT  783 (975)
T ss_pred             HHHHHhhccccccccCCCchhhhhhhccCCCCCCCCccccccccccccccchHHHHHhhhhhhhhhhhhhhhHHHHHhhc
Confidence            888888888777 454444443333331211   1233345999999999999999999999999999954443 33334


Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhccC
Q 003660          741 PEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIVL  805 (805)
Q Consensus       741 ~~~~a~~l~Aa~~iq~~~r~~~~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~~~v~IQ~~~Rg~~~  805 (805)
                      +...+..+...++++.+|+.+..+....||..||+.|||||.|++|+.+|+.+|+||+++|||++
T Consensus       784 ~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~  848 (975)
T KOG0520|consen  784 KEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQV  848 (975)
T ss_pred             chhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhH
Confidence            55555778888999999988888888999999999999999999999999999999999999985

>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []

Probab=100.00  E-value=1.8e-63  Score=449.61  Aligned_cols=117  Identities=62%  Similarity=1.077  Sum_probs=114.5

Q ss_pred             HHHHHHhcCChhHHHHHHhcCccceeccCCCCCCCCccEEeeehhhhhcccccCccceeccCCCchhhhhhhcccCCEee
Q 003660           25 MEEAKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEER  104 (805)
Q Consensus        25 ~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~r~~~~~~~~dg~~w~~~~~~~~~~e~~~~lk~~~~~~  104 (805)
                      ++| ++|||+|+||++||+||++|.+..+||++|+|||+|||||+++||||||||+|||||||||||||||||||||+|+
T Consensus         2 ~~~-~~rWl~~~Ei~~IL~n~~~~~~~~~~~~rP~sGslfLf~Rk~~r~fRkDG~~WrKkkdgktvRE~HekLKv~~~e~   80 (118)
T PF03859_consen    2 LKE-KTRWLKPEEIAFILLNYEKFQIWLEPPNRPPSGSLFLFNRKVVRFFRKDGHNWRKKKDGKTVREDHEKLKVGGVEV   80 (118)
T ss_pred             chH-hcccCCHHHHHHHHHhHHhCCcccCCCCCCCCceEEEEEchHhhhhhcccceeEEcCCCCchhhhhhhhccCceee
Confidence            455 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecCCCCcceeeEeecccCCCCceEEEeccccC
Q 003660          105 IHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETH  142 (805)
Q Consensus       105 ~~~~y~~~~~~~~f~rr~y~~~~~~~~~~vlvhy~~~~  142 (805)
                      |||||||||+|||||||||||||++|+||||||||||+
T Consensus        81 l~~~Yah~~~~~~F~RR~Ywll~~~~~~iVLVHY~~v~  118 (118)
T PF03859_consen   81 LNCYYAHSEDNPTFHRRCYWLLDPPYEHIVLVHYLDVK  118 (118)
T ss_pred             eEEEEEeeccCCCeeeEEEEccCCCCceEEEEEeeecC
Confidence            99999999999999999999999999999999999985

CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.4e-22  Score=194.39  Aligned_cols=134  Identities=19%  Similarity=0.165  Sum_probs=114.6

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc--CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCchhhHHH
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWS-GLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~--Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~-Gadvn~~D~~G~TpLh~Aa  611 (805)
                      ++++|||+||..|+.+  ++.+|+.  +..+|.+|..||||||.||..|+.++|+.|+.+ |+|+|..++.|.|+||+|+
T Consensus        37 D~Rt~LHwa~S~g~~e--iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVE--IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             cCCceeeeeeecCchh--HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence            6888999999888877  7888875  778888888899999999999999999988876 8999999889999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccccc
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA  676 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~  676 (805)
                      ..|+.+|+++|++.||.+++      +|..|.||||-|+.-|..+++++|+..|+..+..+....
T Consensus       115 gK~r~eIaqlLle~ga~i~~------kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~  173 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALIRI------KDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGF  173 (226)
T ss_pred             cCChhhHHHHHHhcCCCCcc------cccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCc
Confidence            99999999999999988888      888999999999999999999999988877666555443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=6.7e-21  Score=184.47  Aligned_cols=132  Identities=23%  Similarity=0.246  Sum_probs=123.3

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc--CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~--Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      +.|.+|||.||..|+.+  +++-|+.  |+++|..+..|+|+|||||..|..+++++|++.|+.|+.+|..|.||||-||
T Consensus        70 daGWtPlhia~s~g~~e--vVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   70 DAGWTPLHIAASNGNDE--VVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA  147 (226)
T ss_pred             ccCCchhhhhhhcCcHH--HHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH
Confidence            45889999999999876  6666665  9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      .-|..+++++|+..||.+|.      +|..|.||||.|...|+.+++.+|+++|++..+.+.
T Consensus       148 avGklkvie~Li~~~a~~n~------qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQGAPLNT------QDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK  203 (226)
T ss_pred             hccchhhHHHHHhcCCCCCc------ccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence            99999999999999999998      999999999999888999999999999988776655

>PHA02791 ankyrin-like protein; Provisional

Probab=99.80  E-value=6.7e-19  Score=189.52  Aligned_cols=130  Identities=13%  Similarity=0.040  Sum_probs=87.0

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCC-hHHHHHHHcCCHHHHHHHHHCCCCCCccc-CCCCchhhHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQ-GVIHLCAMLGYTWAILLFSWSGLSLDFRD-KYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~-T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D-~~G~TpLh~A  610 (805)
                      ..+.||||.|+..++..  ++++|++ |++++..+..|+ ||||+|+..|+.++|++|+..|.+.  .| ..|+||||+|
T Consensus        92 ~~G~TpLh~Aa~~g~~e--ivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~A  167 (284)
T PHA02791         92 DKGNTALYYAVDSGNMQ--TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHIT  167 (284)
T ss_pred             CCCCCHHHHHHHcCCHH--HHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHH
Confidence            34667777777777665  5666666 777776666663 6777777777777777777665432  22 2367777777


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNA-ADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       611 a~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~Tp-L~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      +..|+.++|++||++||+++.      +|..|.|| ||+|+..|+.+++++|+++|++.+..+.
T Consensus       168 a~~g~~eiv~lLL~~gAd~n~------~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        168 IKNGHVDMMILLLDYMTSTNT------NNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCCCc------ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            777777777777777777766      56666665 7777777777777777777766655444

>PHA02791 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=187.46  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=117.3

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCC-chhhHHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGW-TALHWAA  611 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~-TpLh~Aa  611 (805)
                      .++.||||.|+..++..  ++++|+. |++++.+|..|+||||+||..|+.+++++|+.+|++++.++..|+ ||||+|+
T Consensus        59 ~d~~TpLh~Aa~~g~~e--iV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa  136 (284)
T PHA02791         59 LENEFPLHQAATLEDTK--IVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV  136 (284)
T ss_pred             CCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH
Confidence            35689999999999977  7888887 999999999999999999999999999999999999999999986 8999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQN-PGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GAd~n~~td~~~~d-~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      ..|+.++|++|++.|++.        .| ..|.||||+|+..|+.+++++|+++|++.+..+.
T Consensus       137 ~~g~~eivk~LL~~~~~~--------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~  191 (284)
T PHA02791        137 MLNDVSIVSYFLSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS  191 (284)
T ss_pred             HcCCHHHHHHHHhcCCcc--------cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999987643        22 3589999999999999999999999998776644

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.78  E-value=1.1e-18  Score=196.88  Aligned_cols=131  Identities=25%  Similarity=0.317  Sum_probs=111.1

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYD-VHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D-~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      .++.+.||.||+++++.  ++++|++ |+++|..+ .-|.|||||||+.|+..+|.+|+++|||++.+|..|.||||+||
T Consensus        76 ~~g~tlLHWAAiNNrl~--v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~  153 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLD--VARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA  153 (600)
T ss_pred             cCCccceeHHHHcCcHH--HHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH
Confidence            36778889999988887  7888888 88888877 67888999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccc
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~  672 (805)
                      ..|+.-+|.+||.+|+++|.      +|.+|+|||++|+.+|+...++.|+..|+.....+
T Consensus       154 ~~~~~~~vayll~~~~d~d~------~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  154 QFGHTALVAYLLSKGADIDL------RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HhCchHHHHHHHHhcccCCC------cCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            99999888899888888888      88889999999988888887888888886554443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.9e-18  Score=171.91  Aligned_cols=133  Identities=22%  Similarity=0.184  Sum_probs=117.3

Q ss_pred             cccchHHHHHHcCCcHH--HHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHH---HHHHHHCCCCCCccc-CCCCchh
Q 003660          535 EAKDSFFELTLKSKLKE--WLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWA---ILLFSWSGLSLDFRD-KYGWTAL  607 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~--~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~---v~~LL~~Gadvn~~D-~~G~TpL  607 (805)
                      ++.+.||.||..+++..  .+++.|.+ |++++..|..|+||||+||..|+.++   +++|+..|+++|.+| ..|+|||
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpL   98 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLL   98 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHH
Confidence            46689999999999753  14445566 88999999999999999999998654   789999999999998 4899999


Q ss_pred             hHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          608 HWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       608 h~Aa~~G~~~iV~~LL~-~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      |+|+..|+.+++++|+. .|++++.      +|..|.||||+|+..++.+++++|+++|++.+..+.
T Consensus        99 h~A~~~g~~~iv~~Ll~~~gad~~~------~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         99 HIAASTKNYELAEWLCRQLGVNLGA------INYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             HHHHHhCCHHHHHHHHhccCCCccC------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            99999999999999995 8999998      889999999999999999999999999988765544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.78  E-value=3e-18  Score=194.12  Aligned_cols=130  Identities=19%  Similarity=0.203  Sum_probs=120.1

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      .++.||||.|+..++..  ++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       100 ~~g~tpL~~A~~~~~~~--iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875        100 KDGMTPLHLATILKKLD--IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             CCCCCHHHHHHHhCCHH--HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            45789999999999987  7888888 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHcccccCcc
Q 003660          613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGG-LNAADIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~td~~~~d~~G-~TpL~lA~~~g~~~iv~lLle~Ga~~~~~  671 (805)
                      .|+.+++++|++.|++++.      .+..| .||+|+|+..|+.+++++|+++|++.+..
T Consensus       178 ~g~~eiv~~Ll~~ga~~n~------~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        178 KGDIAICKMLLDSGANIDY------FGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             cCCHHHHHHHHhCCCCCCc------CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            9999999999999999998      55666 58999999999999999999999987653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.1e-17  Score=172.85  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=115.9

Q ss_pred             ccccchHHHHHHcC--CcHHHHHHHHHc-CCCCCccC-CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCcccCCCCch
Q 003660          534 PEAKDSFFELTLKS--KLKEWLLERVVE-GSKTTEYD-VHGQGVIHLCAML---GYTWAILLFSWSGLSLDFRDKYGWTA  606 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~--~l~~~lv~~Ll~-Gadin~~D-~~G~T~LH~Aa~~---G~~~~v~~LL~~Gadvn~~D~~G~Tp  606 (805)
                      ..+.||||.|+..+  +.+  ++++|++ |+++|.++ ..|.||||+|+..   ++.+++++|+++|+++|.+|..|.||
T Consensus        49 ~~g~TpLh~a~~~~~~~~e--iv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~Tp  126 (209)
T PHA02859         49 DLYETPIFSCLEKDKVNVE--ILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNL  126 (209)
T ss_pred             ccCCCHHHHHHHcCCCCHH--HHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            45789999999865  444  8888888 99999987 5899999998864   47999999999999999999999999


Q ss_pred             hhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHH-HHHcCCHHHHHHHHHcccccCcccc
Q 003660          607 LHWAAY--YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADI-ASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       607 Lh~Aa~--~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~l-A~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      ||+|+.  .++.+++++|++.|++++.      +|..|.||||. |+..++.+++++|+++|++.+..+.
T Consensus       127 Lh~a~~~~~~~~~iv~~Li~~gadin~------~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~  190 (209)
T PHA02859        127 LHMYMCNFNVRINVIKLLIDSGVSFLN------KDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK  190 (209)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccc------ccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence            999876  4689999999999999998      88999999996 5668899999999999988766544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.75  E-value=8.2e-18  Score=190.54  Aligned_cols=147  Identities=17%  Similarity=0.197  Sum_probs=127.5

Q ss_pred             CHHHHHHHhCCCCC----CcccccchHHHHHHcCCcHHHHHHHHHc-CCCCC-ccCCCCChHHHHHHHcCCHHHHHHHHH
Q 003660          518 SWAYLFKSVGDKRT----SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTT-EYDVHGQGVIHLCAMLGYTWAILLFSW  591 (805)
Q Consensus       518 ~~~~li~~l~~~~~----~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin-~~D~~G~T~LH~Aa~~G~~~~v~~LL~  591 (805)
                      +..++++.+...+.    ....+.+|||.|+..|+..  +++.|++ |++++ ..+..|.||||+|+..|+.+++++|++
T Consensus        46 ~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~  123 (413)
T PHA02875         46 RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK--AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA  123 (413)
T ss_pred             CCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH--HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh
Confidence            33445555543332    2345789999999999987  6777777 87665 467789999999999999999999999


Q ss_pred             CCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcc
Q 003660          592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       592 ~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~  671 (805)
                      .|++++.++..|+||||+|+..|+.+++++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|++.+..
T Consensus       124 ~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        124 RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI------EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF  197 (413)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999999999999999999999998      8899999999999999999999999999988765


Q ss_pred             c
Q 003660          672 D  672 (805)
Q Consensus       672 ~  672 (805)
                      +
T Consensus       198 ~  198 (413)
T PHA02875        198 G  198 (413)
T ss_pred             C
Confidence            4

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.75  E-value=2.2e-18  Score=194.42  Aligned_cols=149  Identities=21%  Similarity=0.221  Sum_probs=129.3

Q ss_pred             HHHHHHhCCCCCC-----cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 003660          520 AYLFKSVGDKRTS-----LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSG  593 (805)
Q Consensus       520 ~~li~~l~~~~~~-----~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~G  593 (805)
                      .++++.+.+.+.+     -..+.||||+||.+|++.  ++.+|++ |+|++.+|.+|.||||+||..|+.-+|.+||..|
T Consensus        91 l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~--vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~  168 (600)
T KOG0509|consen   91 LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS--VVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG  168 (600)
T ss_pred             HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH--HHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc
Confidence            3455555333333     234679999999999998  7888888 9999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          594 LSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       594 advn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      +++|.+|.+|+|||||||..|+...++.||..|+.++..     .|..|.||||+|+..|+..++.+|++.|++....+.
T Consensus       169 ~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~-----d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~  243 (600)
T KOG0509|consen  169 ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT-----DDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNT  243 (600)
T ss_pred             ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc-----ccccCCchHHHHHhcCCcceEehhhhcCCccccccc
Confidence            999999999999999999999999899999999999983     248999999999999999999988888877766666


Q ss_pred             cc
Q 003660          674 TL  675 (805)
Q Consensus       674 ~l  675 (805)
                      ..
T Consensus       244 ~g  245 (600)
T KOG0509|consen  244 NG  245 (600)
T ss_pred             CC
Confidence            53

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=8.7e-18  Score=167.60  Aligned_cols=127  Identities=20%  Similarity=0.148  Sum_probs=114.6

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHH------c-CCCCCccCCCCChHHHHHHHcCC----HHHHHHHHHCCCCCCcccC-
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVV------E-GSKTTEYDVHGQGVIHLCAMLGY----TWAILLFSWSGLSLDFRDK-  601 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll------~-Gadin~~D~~G~T~LH~Aa~~G~----~~~v~~LL~~Gadvn~~D~-  601 (805)
                      ..+.|+||.|+..|+..  +++.|+      . |++++.+|..|+||||+|+..|+    .+++++|+..|+++|.+|. 
T Consensus        19 ~~g~t~Lh~Aa~~g~~~--~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         19 SEGENFFHEAARCGCFD--IIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cCCCCHHHHHHHcCCHH--HHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            45789999999999987  566552      2 68899999999999999999999    5889999999999999986 


Q ss_pred             CCCchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHccccc
Q 003660          602 YGWTALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       602 ~G~TpLh~Aa~~G~~~iV~~LL~-~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~  668 (805)
                      .|+||||+|+..++.+++++|+. .|++++.      +|..|.||||+|...++.+++++|++.++..
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~------~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHF------CNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc------CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999997 5999988      8899999999999999999999999988653

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.8e-17  Score=191.13  Aligned_cols=144  Identities=21%  Similarity=0.273  Sum_probs=121.1

Q ss_pred             HHHHHHHhCCCCCC----cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCC------ChHHHHHHHcCC--HHH
Q 003660          519 WAYLFKSVGDKRTS----LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHG------QGVIHLCAMLGY--TWA  585 (805)
Q Consensus       519 ~~~li~~l~~~~~~----~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G------~T~LH~Aa~~G~--~~~  585 (805)
                      ..++++.+.+.+.+    ...+.||||.|+..++..  ++++|++ |++++..+..|      .||||+|+..|+  .++
T Consensus       155 ~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~--iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        155 DLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID--VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEV  232 (480)
T ss_pred             hHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH--HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH
Confidence            45555555444333    235778999999999876  7888887 99999888888      899999999999  999


Q ss_pred             HHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          586 ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       586 v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      +++|++.|+++|.+|..|+||||+|+..|+.+++++|++.||+++.      +|..|.|||++|+..++.+++++|+++|
T Consensus       233 v~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~------~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        233 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL------VNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998888      7889999999999999999999999999


Q ss_pred             cccCc
Q 003660          666 LVAQF  670 (805)
Q Consensus       666 a~~~~  670 (805)
                      ++.+.
T Consensus       307 ~~i~~  311 (480)
T PHA03100        307 PSIKT  311 (480)
T ss_pred             CCHHH
Confidence            76543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.73  E-value=3e-17  Score=189.76  Aligned_cols=131  Identities=20%  Similarity=0.131  Sum_probs=120.1

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhc-
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY-  613 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~-  613 (805)
                      +.||||.|+..++..  ++++|++ |+++|..|..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+.. 
T Consensus       168 g~tpLh~A~~~~~~~--iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~  245 (477)
T PHA02878        168 GNTALHYATENKDQR--LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC  245 (477)
T ss_pred             CCCHHHHHHhCCCHH--HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhc
Confidence            889999999999987  7888888 999999999999999999999999999999999999999999999999999975 


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcccccCccccccc
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNP-GGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA  676 (805)
Q Consensus       614 G~~~iV~~LL~~GAd~n~~td~~~~d~-~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~  676 (805)
                      ++.+++++|+++|++++.      ++. .|.||||+|  .++.+++++|+++|++.+..+....
T Consensus       246 ~~~~iv~~Ll~~gadvn~------~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~  301 (477)
T PHA02878        246 KDYDILKLLLEHGVDVNA------KSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKL  301 (477)
T ss_pred             CCHHHHHHHHHcCCCCCc------cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCC
Confidence            789999999999999998      554 799999999  5788999999999998877655433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=9.9e-18  Score=164.22  Aligned_cols=129  Identities=18%  Similarity=0.198  Sum_probs=109.0

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHcCC-----CCCccCCCCChHHHHHHHcCCH---HHHHHHHHCCCCCCcccC-CCC
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVEGS-----KTTEYDVHGQGVIHLCAMLGYT---WAILLFSWSGLSLDFRDK-YGW  604 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~Ga-----din~~D~~G~T~LH~Aa~~G~~---~~v~~LL~~Gadvn~~D~-~G~  604 (805)
                      .++.||||+|+..|+..+ ++.......     .++..|..|+||||+||..|+.   +++++|+..|+++|.+|. .|+
T Consensus        15 ~~g~tpLh~A~~~g~~~~-l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~   93 (154)
T PHA02736         15 IEGENILHYLCRNGGVTD-LLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGN   93 (154)
T ss_pred             CCCCCHHHHHHHhCCHHH-HHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCC
Confidence            358899999999998543 221111111     2345788999999999999986   468899999999999984 899


Q ss_pred             chhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccC
Q 003660          605 TALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQ  669 (805)
Q Consensus       605 TpLh~Aa~~G~~~iV~~LL~-~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~  669 (805)
                      ||||+|+..|+.+++++|+. .|++++.      +|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~------~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVNMEI------LNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcc------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999998 5999988      88999999999999999999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.73  E-value=5.2e-17  Score=185.46  Aligned_cols=141  Identities=20%  Similarity=0.132  Sum_probs=112.9

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      ..+.||||.|+..++..  ++++|++ |+++|.+|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.
T Consensus       122 ~~g~T~Lh~A~~~~~~~--~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        122 AELKTFLHYAIKKGDLE--SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             CCCccHHHHHHHCCCHH--HHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45778888888888876  6777777 88888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCC-------------------------CCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHccc
Q 003660          613 YGREKMVVDLLSAGAKPNLV-------------------------TDPTSQNPGGLNAADIASKKG-FDGLAAFLSEQAL  666 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~-------------------------td~~~~d~~G~TpL~lA~~~g-~~~iv~lLle~Ga  666 (805)
                      .|+.+++++|++.|++++..                         .+++.+|..|.||||+|+..+ +.+++++|+++|+
T Consensus       200 ~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga  279 (434)
T PHA02874        200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA  279 (434)
T ss_pred             cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC
Confidence            88888888888888776543                         134557888899999998765 7889999999998


Q ss_pred             ccCccccccc
Q 003660          667 VAQFNDMTLA  676 (805)
Q Consensus       667 ~~~~~~~~l~  676 (805)
                      +.+..+....
T Consensus       280 d~n~~d~~g~  289 (434)
T PHA02874        280 DISIKDNKGE  289 (434)
T ss_pred             CCCCCCCCCC
Confidence            8776655443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.73  E-value=3e-17  Score=189.67  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             HHHHHHc-CCCCCccCCC-CChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 003660          553 LLERVVE-GSKTTEYDVH-GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       553 lv~~Ll~-Gadin~~D~~-G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n  630 (805)
                      ++++|++ |+++|..|.. |.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666 9999999988 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcccccCccc
Q 003660          631 LVTDPTSQNPGGLNAADIASKK-GFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       631 ~~td~~~~d~~G~TpL~lA~~~-g~~~iv~lLle~Ga~~~~~~  672 (805)
                      .      +|..|.||||+|+.. ++.+++++|+++|++.+..+
T Consensus       229 ~------~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        229 A------RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             C------CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            8      889999999999975 78999999999999876543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.72  E-value=6.9e-17  Score=185.70  Aligned_cols=131  Identities=18%  Similarity=0.246  Sum_probs=117.8

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCH--HHHHHHHHCCCCCCcccCCCCchhhHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYT--WAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~--~~v~~LL~~Gadvn~~D~~G~TpLh~A  610 (805)
                      ..+.|+||.++.......-+++.|++ |++++.+|..|.||||+||..|+.  .++..|+..|+++|.+|..|+||||+|
T Consensus       185 ~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A  264 (471)
T PHA03095        185 DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA  264 (471)
T ss_pred             CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            45789999998764433337777877 999999999999999999999975  578899999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCc
Q 003660          611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  670 (805)
Q Consensus       611 a~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~  670 (805)
                      +..|+.+++++|++.||+++.      +|..|.||||+|+..|+.+++++|++++++...
T Consensus       265 ~~~~~~~~v~~LL~~gad~n~------~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        265 AVFNNPRACRRLIALGADINA------VSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET  318 (471)
T ss_pred             HHcCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHH
Confidence            999999999999999999998      889999999999999999999999999976543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.72  E-value=2.2e-16  Score=193.75  Aligned_cols=129  Identities=19%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             cchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhh-------
Q 003660          537 KDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH-------  608 (805)
Q Consensus       537 ~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh-------  608 (805)
                      .++|+.||..|+..  +++.|++ |+++|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||       
T Consensus       526 ~~~L~~Aa~~g~~~--~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        526 ASNLLTVASTGNAA--LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             hhHHHHHHHcCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            34555555555543  3444444 5555555555555555555555555555555555555555555555555       


Q ss_pred             ------------------------HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003660          609 ------------------------WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       609 ------------------------~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                                              +|+..|+.+++++|+++|+++|.      +|.+|.||||+|+..|+.+++++|+++
T Consensus       604 ~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~------~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        604 HKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS------EDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             HHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence                                    55666666677777888888887      899999999999999999999999999


Q ss_pred             ccccCcccc
Q 003660          665 ALVAQFNDM  673 (805)
Q Consensus       665 Ga~~~~~~~  673 (805)
                      |++.+..+.
T Consensus       678 GAdv~~~~~  686 (823)
T PLN03192        678 GADVDKANT  686 (823)
T ss_pred             CCCCCCCCC
Confidence            998876554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.72  E-value=5.1e-17  Score=187.35  Aligned_cols=152  Identities=17%  Similarity=0.170  Sum_probs=132.8

Q ss_pred             cCCHHHHHHHhCCCCCC----cccccchHHHHHHcC--CcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHH
Q 003660          516 SNSWAYLFKSVGDKRTS----LPEAKDSFFELTLKS--KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILL  588 (805)
Q Consensus       516 ~~~~~~li~~l~~~~~~----~~~~~t~L~~Aa~~~--~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~  588 (805)
                      ..+..++++.+.+.+.+    ...+.++||.|+..+  +..  ++++|++ |++++..|..|.||||+|+..|+.+++++
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~--iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~  194 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK--ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKF  194 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH--HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHH
Confidence            34455566665444433    346889999999999  655  7888888 99999999999999999999999999999


Q ss_pred             HHHCCCCCCcccCCC------CchhhHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 003660          589 FSWSGLSLDFRDKYG------WTALHWAAYYGR--EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAF  660 (805)
Q Consensus       589 LL~~Gadvn~~D~~G------~TpLh~Aa~~G~--~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~l  660 (805)
                      |+++|++++..+..|      .||||+|+..|+  .+++++|++.|++++.      +|..|.||||+|+..|+.+++++
T Consensus       195 Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~------~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        195 LLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI------KDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999      999999999999  9999999999999998      88999999999999999999999


Q ss_pred             HHHcccccCcccccc
Q 003660          661 LSEQALVAQFNDMTL  675 (805)
Q Consensus       661 Lle~Ga~~~~~~~~l  675 (805)
                      |+++|++.+..+...
T Consensus       269 Ll~~gad~n~~d~~g  283 (480)
T PHA03100        269 LLDLGANPNLVNKYG  283 (480)
T ss_pred             HHHcCCCCCccCCCC
Confidence            999999877665443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.72  E-value=2.1e-17  Score=179.50  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=117.4

Q ss_pred             CCHHHHHHHhCCCCCC----cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHH
Q 003660          517 NSWAYLFKSVGDKRTS----LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW  591 (805)
Q Consensus       517 ~~~~~li~~l~~~~~~----~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~  591 (805)
                      .+..++++.+...+.+    +....|||-.||..|+++  ++++|++ |+|++..|..|.|.||+||..|+.+++++|++
T Consensus        94 AGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~le--ivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle  171 (615)
T KOG0508|consen   94 AGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLE--IVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLE  171 (615)
T ss_pred             cCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhH--HHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHH
Confidence            4556666666444333    333558999999999988  7888888 99999999999999999999999999999999


Q ss_pred             CCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 003660          592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE  663 (805)
Q Consensus       592 ~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle  663 (805)
                      .|+|+|.++..|+|+||.|+..|+.+++++|+.+|+.++.       |..|.|||..|+..|+.++|.+|+.
T Consensus       172 ~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-------d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  172 QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-------DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-------cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999999999998774       6779999999999999999999986

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=6.4e-17  Score=187.58  Aligned_cols=157  Identities=15%  Similarity=0.117  Sum_probs=111.8

Q ss_pred             HHHHHHhCCCCCC----cccccchHHHHHHcCCc--HHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC---HHHHHHH
Q 003660          520 AYLFKSVGDKRTS----LPEAKDSFFELTLKSKL--KEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY---TWAILLF  589 (805)
Q Consensus       520 ~~li~~l~~~~~~----~~~~~t~L~~Aa~~~~l--~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~---~~~v~~L  589 (805)
                      .++++.+.+.+.+    ...|.||||.|+..+..  .+ ++++|++ |++++..|..|.||||+|+..|+   .+++++|
T Consensus        89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~-iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~L  167 (489)
T PHA02798         89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLE-ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL  167 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHH-HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHH
Confidence            4455554444333    23567777777776531  22 5666666 77777777777777777777776   7777777


Q ss_pred             HHCCCCCCccc-CCCCchhhHHHhc----CCHHHHHHHHHcCCCCCCCC-------------------------------
Q 003660          590 SWSGLSLDFRD-KYGWTALHWAAYY----GREKMVVDLLSAGAKPNLVT-------------------------------  633 (805)
Q Consensus       590 L~~Gadvn~~D-~~G~TpLh~Aa~~----G~~~iV~~LL~~GAd~n~~t-------------------------------  633 (805)
                      ++.|+++|.++ ..|.||||.++..    ++.+++++|+++|++++...                               
T Consensus       168 l~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~  247 (489)
T PHA02798        168 LEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS  247 (489)
T ss_pred             HHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh
Confidence            77777777764 3577777777653    36777777777777665421                               


Q ss_pred             --CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccccccc
Q 003660          634 --DPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAG  677 (805)
Q Consensus       634 --d~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~~  677 (805)
                        |++.+|..|.||||+|+..|+.+++++|+++|++.+..+.....
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~T  293 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNT  293 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCc
Confidence              45668889999999999999999999999999998876654433

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.71  E-value=7e-17  Score=184.42  Aligned_cols=149  Identities=14%  Similarity=0.117  Sum_probs=126.8

Q ss_pred             ccCCHHHHHHHhCCCCCC----cccccchHHHHHHcCCcHHHHHHHHHc------------------------CCCCCcc
Q 003660          515 ISNSWAYLFKSVGDKRTS----LPEAKDSFFELTLKSKLKEWLLERVVE------------------------GSKTTEY  566 (805)
Q Consensus       515 ~~~~~~~li~~l~~~~~~----~~~~~t~L~~Aa~~~~l~~~lv~~Ll~------------------------Gadin~~  566 (805)
                      ...+..++++.+.+.+..    ...+.+||+.|+..++..  ++++|++                        |++++.+
T Consensus        43 ~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~--iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~  120 (434)
T PHA02874         43 IRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD--IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK  120 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH--HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC
Confidence            334555666665544433    234678999999998875  5555543                        5567788


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHH
Q 003660          567 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA  646 (805)
Q Consensus       567 D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL  646 (805)
                      |..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|++.|++++.      .|..|.|||
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~------~~~~g~tpL  194 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV------KDNNGESPL  194 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC------CCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988      789999999


Q ss_pred             HHHHHcCCHHHHHHHHHcccccCcc
Q 003660          647 DIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       647 ~lA~~~g~~~iv~lLle~Ga~~~~~  671 (805)
                      |+|+..|+.+++++|++.|++....
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~  219 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNK  219 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCC
Confidence            9999999999999999999876544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.70  E-value=2.3e-16  Score=190.10  Aligned_cols=136  Identities=18%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      ...+.||||.|+..++..+ ++.+|++ |+++|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus       338 d~~g~TpLh~A~~~~~~~~-iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKD-IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL  416 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHH-HHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHH
Confidence            3457899999998776655 6666777 9999999999999999999999999999999999999999999999999998


Q ss_pred             hcCC-HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcccccCcccccc
Q 003660          612 YYGR-EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG-FDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       612 ~~G~-~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g-~~~iv~lLle~Ga~~~~~~~~l  675 (805)
                      ..+. ..++++|++.|+++|.      +|..|.||||+|+..| +.+++++|+++|++.+..+...
T Consensus       417 ~~~~~~~~vk~Ll~~gadin~------~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g  476 (682)
T PHA02876        417 CGTNPYMSVKTLIDRGANVNS------KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQN  476 (682)
T ss_pred             HcCCHHHHHHHHHhCCCCCCc------CCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            7765 5678999999999998      8899999999999876 6899999999999887765543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.70  E-value=1.4e-16  Score=189.62  Aligned_cols=136  Identities=14%  Similarity=0.056  Sum_probs=118.2

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHH-----------------------------------
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLC-----------------------------------  577 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~A-----------------------------------  577 (805)
                      ..+.||||.|+..|+...-++++|++ |+++|.+|..|+||||+|                                   
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            45889999999999753227888888 999999999999999975                                   


Q ss_pred             --HHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH--
Q 003660          578 --AMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY--YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK--  651 (805)
Q Consensus       578 --a~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~--~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~--  651 (805)
                        |..|+.+++++|++.|+++|.+|..|+||||+|+.  .++.+++++|++.|++++.      +|..|.||||+|+.  
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~------kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE------PDNIGNTVLHTYLSML  363 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc------CCCCCCCHHHHHHHhh
Confidence              34578899999999999999999999999999875  4689999999999999998      88999999999875  


Q ss_pred             ------------cCCHHHHHHHHHcccccCcccccc
Q 003660          652 ------------KGFDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       652 ------------~g~~~iv~lLle~Ga~~~~~~~~l  675 (805)
                                  .++.+++++|+++|++.+..+...
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G  399 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISLGADITAVNCLG  399 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHCCCCCCCcCCCC
Confidence                        378999999999999887655443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=4.3e-17  Score=177.10  Aligned_cols=130  Identities=15%  Similarity=0.212  Sum_probs=121.9

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      .++-.||..|+..|+++  +++.|++ |+++|.......|||-.||.-|+.++|++|+++|+|++..|..|.|.||+||+
T Consensus        82 IegappLWaAsaAGHl~--vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLE--VVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             cCCCchhhHHhccCcHH--HHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec
Confidence            35667888899999998  8898888 99999988888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcc
Q 003660          613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~  671 (805)
                      .||.+|+++|++.|||+|.      ++..|.|+||.|+..|+.+++++|+.+|+.....
T Consensus       160 kGh~~I~qyLle~gADvn~------ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNA------KSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             cCchHHHHHHHHhCCCcch------hcccCchHHHhhhhcccHHHHHHHHhCCceeeec
Confidence            9999999999999999999      8899999999999999999999999999765543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.69  E-value=2.3e-16  Score=162.84  Aligned_cols=129  Identities=12%  Similarity=0.132  Sum_probs=112.4

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCcccC-CCCchhhHHHh
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLG--YTWAILLFSWSGLSLDFRDK-YGWTALHWAAY  612 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G--~~~~v~~LL~~Gadvn~~D~-~G~TpLh~Aa~  612 (805)
                      ..+||+.|+..++..  +++.|+..  +|..|..|.||||+|+..+  +.+++++|+++|+++|.++. .|+||||+|+.
T Consensus        21 ~~~pL~~A~~~~~~~--~vk~Li~~--~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         21 YCNPLFYYVEKDDIE--GVKKWIKF--VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             cCcHHHHHHHhCcHH--HHHHHHHh--hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            568999999999988  67777753  5678899999999999865  89999999999999999974 89999999886


Q ss_pred             c---CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHcccccCccccc
Q 003660          613 Y---GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK--KGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       613 ~---G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~--~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                      .   ++.+++++|+++|++++.      +|..|.||||+|+.  .++.+++++|+++|++.+..+..
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~  157 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITE------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFD  157 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCC
Confidence            4   479999999999999998      88999999999876  46899999999999887665543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.68  E-value=1.3e-16  Score=193.32  Aligned_cols=251  Identities=17%  Similarity=0.216  Sum_probs=180.1

Q ss_pred             CCcEEEEcCCeecceeeccccceeeeCCCCCCCeeEEEEEeCCCCccccccccccCCCCcccCCCCccccchhhHHHHHH
Q 003660          398 KSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAPVASSEDKSKWEEFQVQM  477 (805)
Q Consensus       398 ~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph~~G~V~l~v~~~n~~~~se~~~Feyr~~~~~~~~~~~~~~~~~~el~l~~  477 (805)
                      .....|.-|.+++.--+...|..-|..+  .+|..||+++..-..+  .++..-+...  .  .....+..+.+++|+..
T Consensus       377 pl~la~~~g~~~~v~Lll~~ga~~~~~g--k~gvTplh~aa~~~~~--~~v~l~l~~g--A--~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  377 PLHLAVKSGRVSVVELLLEAGADPNSAG--KNGVTPLHVAAHYGNP--RVVKLLLKRG--A--SPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             chhhhcccCchhHHHhhhhccCCcccCC--CCCcceeeehhhccCc--ceEEEEeccC--C--ChhhHhhcCCChhhhhh
Confidence            3457788888888877888887633222  7899999998743321  1222222210  0  01112233457777665


Q ss_pred             HHHHHHhccccccccccCCCCCCchHHHhhhhhhhhcccCCHHHHHHHhCCC----CCCcccccchHHHHHHcCCcHHHH
Q 003660          478 RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDK----RTSLPEAKDSFFELTLKSKLKEWL  553 (805)
Q Consensus       478 Rl~~ll~~~~~~lqil~~k~~~~~l~d~~~~a~~i~~~~~~~~~li~~l~~~----~~~~~~~~t~L~~Aa~~~~l~~~l  553 (805)
                      ...+++...   ..++..+.+++..... .+...-.+...+|.++...+.+.    .++.+.+-+++|.+...+...  .
T Consensus       449 ~~g~~~~~~---~~l~~~g~~~n~~s~~-G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~--~  522 (1143)
T KOG4177|consen  449 KKGRYLQIA---RLLLQYGADPNAVSKQ-GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK--V  522 (1143)
T ss_pred             hcccHhhhh---hhHhhcCCCcchhccc-cCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH--H
Confidence            544211111   1122334555533221 12222223346667776666543    344566779999999999876  4


Q ss_pred             HHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCC
Q 003660          554 LERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLV  632 (805)
Q Consensus       554 v~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~  632 (805)
                      ...+.+ |++++.++.+|.||||.||..|+..+|++||++|+|++.+|+.|+||||.||..|+.+|+.+|+++||++|. 
T Consensus       523 ~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna-  601 (1143)
T KOG4177|consen  523 AKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA-  601 (1143)
T ss_pred             HHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc-
Confidence            555555 999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHccccc
Q 003660          633 TDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       633 td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~  668 (805)
                           .|.+|.|||++|+..|+.+++++|+..++++
T Consensus       602 -----~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  602 -----ADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             -----ccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence                 8899999999999999999999999999885

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.68  E-value=2.1e-16  Score=188.12  Aligned_cols=152  Identities=14%  Similarity=0.024  Sum_probs=124.0

Q ss_pred             CCHHHHHHHhCCCC-CC-----cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC--HHHHH
Q 003660          517 NSWAYLFKSVGDKR-TS-----LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY--TWAIL  587 (805)
Q Consensus       517 ~~~~~li~~l~~~~-~~-----~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~--~~~v~  587 (805)
                      +.-.++++.+.+.+ .+     ...+.||||.|+........++++|++ |+++|..|..|.||||+|+..|+  .++|+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            34456666665554 22     235789999876543322228888888 99999999999999999999995  58999


Q ss_pred             HHHHCCCCCCcccCCCCchhhHH-------------------------------------HhcCCHHHHHHHHHcCCCCC
Q 003660          588 LFSWSGLSLDFRDKYGWTALHWA-------------------------------------AYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       588 ~LL~~Gadvn~~D~~G~TpLh~A-------------------------------------a~~G~~~iV~~LL~~GAd~n  630 (805)
                      +|+++||++|.+|..|+||||+|                                     +..|+.+++++|++.|++++
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN  311 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH  311 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee
Confidence            99999999999999999999975                                     44578899999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHcccccCccccc
Q 003660          631 LVTDPTSQNPGGLNAADIASK--KGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       631 ~~td~~~~d~~G~TpL~lA~~--~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                      .      +|..|.||||+|+.  .++.+++++|+++|++.+..+..
T Consensus       312 ~------kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~  351 (764)
T PHA02716        312 Y------KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI  351 (764)
T ss_pred             c------cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC
Confidence            8      88999999999864  46889999999999987765543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.68  E-value=4.1e-16  Score=179.30  Aligned_cols=125  Identities=21%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             ccchHHHHHHcC---CcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcC-CHHHHHHHHHCCCCCCcccCCCCchhhHH
Q 003660          536 AKDSFFELTLKS---KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLG-YTWAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       536 ~~t~L~~Aa~~~---~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G-~~~~v~~LL~~Gadvn~~D~~G~TpLh~A  610 (805)
                      +.||||.|+..+   +..  +++.|++ |+++|.+|..|.||||+|+..| ..+++++|+++|+++|.+|..|+||||+|
T Consensus        47 g~t~Lh~a~~~~~~~~~~--iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a  124 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKD--IVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY  124 (471)
T ss_pred             CCCHHHHHHHhcCCChHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            445555555544   222  4444444 5555555555555555555555 35555555555555555555555555555


Q ss_pred             H--hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHccccc
Q 003660          611 A--YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG--FDGLAAFLSEQALVA  668 (805)
Q Consensus       611 a--~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g--~~~iv~lLle~Ga~~  668 (805)
                      +  ..++.+++++|+++|++++.      .|..|.||||+|+..+  ..+++++|+++|++.
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~------~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~  180 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNA------LDLYGMTPLAVLLKSRNANVELLRLLIDAGADV  180 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC
Confidence            5  33445555555555555554      4455555555544433  344555555555443

>PHA02946 ankyin-like protein; Provisional

Probab=99.68  E-value=3.7e-16  Score=178.98  Aligned_cols=128  Identities=15%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHc-CCCCCc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhc
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTE-YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~-~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~  613 (805)
                      +.||||.|+..++...-++++|++ |+++|. .|..|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~  183 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS  183 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh
Confidence            444555444433211113344444 444443 3444555554 3334445555555555555555555555555555443


Q ss_pred             CC--HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcccccCcc
Q 003660          614 GR--EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG--FDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       614 G~--~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g--~~~iv~lLle~Ga~~~~~  671 (805)
                      ++  .+++++|++.|++++.      +|..|.||||+|+..|  +.+++++|++ |++.+..
T Consensus       184 ~~~~~~~v~~Ll~~Gadin~------~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~  238 (446)
T PHA02946        184 DNPKASTISWMMKLGISPSK------PDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQ  238 (446)
T ss_pred             cCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCC
Confidence            32  3455555555555554      5555666666666553  4555555553 4444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.68  E-value=4.8e-16  Score=180.57  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             cccchHHHHHHcC---CcHHHHHHHHHc-CCCC-CccCCCCChHHHHHHHc--CCHHHHHHHHHCCCCCCc-ccCCCCch
Q 003660          535 EAKDSFFELTLKS---KLKEWLLERVVE-GSKT-TEYDVHGQGVIHLCAML--GYTWAILLFSWSGLSLDF-RDKYGWTA  606 (805)
Q Consensus       535 ~~~t~L~~Aa~~~---~l~~~lv~~Ll~-Gadi-n~~D~~G~T~LH~Aa~~--G~~~~v~~LL~~Gadvn~-~D~~G~Tp  606 (805)
                      .+.||||.|+..+   +.+  ++++|++ |+++ +..|..|.||||+|+..  ++.++|++|+++|++++. .+..|.||
T Consensus       107 ~g~tpL~~a~~~~~~~~~e--iv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tp  184 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCD--MLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTP  184 (494)
T ss_pred             CCCcHHHHHHHhcccCcHH--HHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCCh
Confidence            4556666555432   222  5555555 6666 55666666666665543  456666666666666665 45566666


Q ss_pred             hhHHHhcC----CHHHHHHHHHcCCCCCCCC--------------------------------CCCCCCCCCCcHHHHHH
Q 003660          607 LHWAAYYG----REKMVVDLLSAGAKPNLVT--------------------------------DPTSQNPGGLNAADIAS  650 (805)
Q Consensus       607 Lh~Aa~~G----~~~iV~~LL~~GAd~n~~t--------------------------------d~~~~d~~G~TpL~lA~  650 (805)
                      ||+|+..+    +.+++++|++.|++++..+                                |++.+|..|.||||+|+
T Consensus       185 L~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa  264 (494)
T PHA02989        185 MNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA  264 (494)
T ss_pred             HHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence            66665443    5666666666666655432                                23445666777777777


Q ss_pred             HcCCHHHHHHHHHcccccCcccc
Q 003660          651 KKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       651 ~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      ..|+.+++++|+++|++.+..+.
T Consensus       265 ~~~~~~~v~~LL~~Gadin~~d~  287 (494)
T PHA02989        265 KVDNYEAFNYLLKLGDDIYNVSK  287 (494)
T ss_pred             HhcCHHHHHHHHHcCCCccccCC
Confidence            77777777777777766655443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.68  E-value=3.5e-16  Score=168.96  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=105.2

Q ss_pred             cccchHHHHHHc-CCcHHHHHHHHHc-CCCCCcc----CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccc-CCCCchh
Q 003660          535 EAKDSFFELTLK-SKLKEWLLERVVE-GSKTTEY----DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KYGWTAL  607 (805)
Q Consensus       535 ~~~t~L~~Aa~~-~~l~~~lv~~Ll~-Gadin~~----D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D-~~G~TpL  607 (805)
                      .+.++++++|.. ++.+  ++++|++ |+++|.+    |..|.||||+|+..|+.+++++|+++||++|.++ ..|.|||
T Consensus        31 ~~~~~lL~~A~~~~~~e--ivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         31 ICIANILYSSIKFHYTD--IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CCCCHHHHHHHHcCCHH--HHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            355555555554 5555  7888888 9999987    4589999999999999999999999999999864 5799999


Q ss_pred             hHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 003660          608 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE  663 (805)
Q Consensus       608 h~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle  663 (805)
                      |+|+..|+.+++++|+.+||+++.      +|..|.||||+|+..++.+++.++..
T Consensus       109 h~Aa~~~~~eivklLL~~GAdin~------kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGADINI------QTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            999999999999999999999998      88999999999999998888766653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.68  E-value=3.3e-16  Score=175.70  Aligned_cols=146  Identities=18%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             CCHHHHHHHhCCCCCCc--ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCc-c-----CCCCChHHHHHHHcCCHHHHH
Q 003660          517 NSWAYLFKSVGDKRTSL--PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTE-Y-----DVHGQGVIHLCAMLGYTWAIL  587 (805)
Q Consensus       517 ~~~~~li~~l~~~~~~~--~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~-~-----D~~G~T~LH~Aa~~G~~~~v~  587 (805)
                      .+..++++.+.+.|.+.  .++.|++|.|+..++.+  ++++|+. |++.+. .     +..|.|++|.|+..++.++++
T Consensus       128 ~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~e--IVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESS--VVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHH--HHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            46667777776666553  34578999999998876  8899988 874332 2     235889999999999999999


Q ss_pred             HHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC--------CHHHHH
Q 003660          588 LFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG--------FDGLAA  659 (805)
Q Consensus       588 ~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g--------~~~iv~  659 (805)
                      +|+.+|+++|.+|..|+||||+|+..|+.+++++|+++||+++.      +|..|.||||+|+..|        +.++++
T Consensus       206 ~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~------~d~~G~TpLh~Aa~~g~~~~~~~~~~eIve  279 (437)
T PHA02795        206 LCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA------VMSNGYTCLDVAVDRGSVIARRETHLKILE  279 (437)
T ss_pred             HHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHcCCcccccccHHHHHH
Confidence            99999999999999999999999999999999999999999999      8899999999999988        479999


Q ss_pred             HHHHcccccCc
Q 003660          660 FLSEQALVAQF  670 (805)
Q Consensus       660 lLle~Ga~~~~  670 (805)
                      +|+++|++.+.
T Consensus       280 lLL~~gadI~~  290 (437)
T PHA02795        280 ILLREPLSIDC  290 (437)
T ss_pred             HHHhCCCCCCc
Confidence            99999976544

>PHA02946 ankyin-like protein; Provisional

Probab=99.67  E-value=7.6e-16  Score=176.46  Aligned_cols=134  Identities=11%  Similarity=0.068  Sum_probs=114.2

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC--HHHHHHHHHCCCCCCc-ccCCCCchhh
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY--TWAILLFSWSGLSLDF-RDKYGWTALH  608 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~--~~~v~~LL~~Gadvn~-~D~~G~TpLh  608 (805)
                      ..++.||||.|+..++..  ++++|++ |+++|.+|..|+||||+|+..+.  .+++++|+.+|+++|. .|..|.||||
T Consensus        69 d~~G~TpLh~Aa~~g~~e--iv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~  146 (446)
T PHA02946         69 DDDGNYPLHIASKINNNR--IVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL  146 (446)
T ss_pred             CCCCCCHHHHHHHcCCHH--HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence            446889999999999876  7888888 99999999999999999988764  7889999999999995 6888999997


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcccccCcccccc
Q 003660          609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG--FDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       609 ~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g--~~~iv~lLle~Ga~~~~~~~~l  675 (805)
                       ||..|+.+++++|++.|++++.      +|..|.||||+|+..+  +.+++++|+++|++.+..+...
T Consensus       147 -aa~~~~~~vv~~Ll~~gad~~~------~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G  208 (446)
T PHA02946        147 -ACTDPSERVFKKIMSIGFEARI------VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDG  208 (446)
T ss_pred             -HHHCCChHHHHHHHhccccccc------cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCC
Confidence             6677899999999999999988      8899999999987754  4689999999998877655433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.66  E-value=8.4e-16  Score=185.31  Aligned_cols=129  Identities=19%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcC-CHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLG-YTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G-~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      .+.||||.|+..++..+ ++++|++ |++++..|..|.||||+|+..| ..++++.|+..|+++|..|..|+||||+|+.
T Consensus       272 ~g~TpLh~Aa~~~~~~~-iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        272 CKNTPLHHASQAPSLSR-LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCCHHHHHHhCCCHHH-HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH
Confidence            35566666666666544 4555555 6666666666666666666666 3566666666666666666666666666665


Q ss_pred             c-CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCc
Q 003660          613 Y-GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  670 (805)
Q Consensus       613 ~-G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~  670 (805)
                      . ++.+++.+|++.|++++.      +|..|.||||+|+..|+.+++++|+++|++.+.
T Consensus       351 ~~~~~~iv~lLl~~gadin~------~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        351 LDRNKDIVITLLELGANVNA------RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCcc------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc
Confidence            4 345666666666666665      556666666666666666666666666655443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.65  E-value=9.8e-16  Score=177.95  Aligned_cols=151  Identities=13%  Similarity=0.149  Sum_probs=124.0

Q ss_pred             CCHHHHHHHhCCCCCCcc---cccchHHHHHHcCCc-----HHHHHHHHHc-CCCCCccCCCCChHHHHHHHc---CCHH
Q 003660          517 NSWAYLFKSVGDKRTSLP---EAKDSFFELTLKSKL-----KEWLLERVVE-GSKTTEYDVHGQGVIHLCAML---GYTW  584 (805)
Q Consensus       517 ~~~~~li~~l~~~~~~~~---~~~t~L~~Aa~~~~l-----~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~---G~~~  584 (805)
                      +...++++.|.+.+.+.+   .+.||||.|+..+..     .+ ++++|++ |+++|.+|..|.||||.|+..   |+.+
T Consensus        47 ~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~-iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~e  125 (494)
T PHA02989         47 DVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKK-IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCD  125 (494)
T ss_pred             CCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHH-HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHH
Confidence            345667777766555432   357999988765532     23 7888888 999999999999999988765   6799


Q ss_pred             HHHHHHHCCCCC-CcccCCCCchhhHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC----CHHH
Q 003660          585 AILLFSWSGLSL-DFRDKYGWTALHWAAYY--GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG----FDGL  657 (805)
Q Consensus       585 ~v~~LL~~Gadv-n~~D~~G~TpLh~Aa~~--G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g----~~~i  657 (805)
                      ++++|+++|+++ +.+|..|+||||+|+..  ++.++|++|+++|++++..     .+..|.||||+|+..+    +.++
T Consensus       126 iv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~-----~~~~g~tpL~~a~~~~~~~~~~~i  200 (494)
T PHA02989        126 MLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK-----TSLYGLTPMNIYLRNDIDVISIKV  200 (494)
T ss_pred             HHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-----ccccCCChHHHHHhcccccccHHH
Confidence            999999999999 89999999999998764  6899999999999999872     3678999999998764    8999


Q ss_pred             HHHHHHcccccCcccc
Q 003660          658 AAFLSEQALVAQFNDM  673 (805)
Q Consensus       658 v~lLle~Ga~~~~~~~  673 (805)
                      +++|+++|++.+..+.
T Consensus       201 v~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        201 IKYLIKKGVNIETNNN  216 (494)
T ss_pred             HHHHHhCCCCccccCC
Confidence            9999999998776553

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.65  E-value=4e-16  Score=179.04  Aligned_cols=135  Identities=19%  Similarity=0.188  Sum_probs=121.2

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHH-CC-CCCCcccCCCCchhhHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW-SG-LSLDFRDKYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~-~G-advn~~D~~G~TpLh~A  610 (805)
                      .++.||||+||..|+..  .++.|+. |++++.+++++.||||.||..|+..+|+.||+ .| ..+|..|-.|.||||+|
T Consensus       271 ~dg~tpLH~a~r~G~~~--svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPE--SVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             ccCCchHHHHHHcCChh--HHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            45789999999999988  6888888 99999999999999999999999999999997 55 56888999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccc
Q 003660          611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       611 a~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      +..||.+++++||..||......   ..|.+|.||||+|+..|+..++++|+.+|++....+.
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~---e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMS---EADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhccc---ccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            99999999999999999987311   1589999999999999999999999999998755443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.65  E-value=5e-16  Score=149.75  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             chHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCH
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~  616 (805)
                      .-++.|+.++.+.+ +..+|.+ ...+|.+|.+|.||||.|+..||.++|+.|+..||+++++...||||||-||..++.
T Consensus        65 rl~lwaae~nrl~e-V~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTE-VQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHH-HHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            45678888888885 4444444 556899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHH-ccccc
Q 003660          617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF-DGLAAFLSE-QALVA  668 (805)
Q Consensus       617 ~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~-~~iv~lLle-~Ga~~  668 (805)
                      +++.+||++|||+|+      ......||||+|+...+ ...+.+|+. .+..+
T Consensus       144 ~va~~LLqhgaDVnA------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p  191 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNA------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP  191 (228)
T ss_pred             hHHHHHHhccCcccc------cccccchhhHHhhcccchHHHHHHHhhccccCh
Confidence            999999999999999      44678999999997654 455666654 34433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.64  E-value=2.8e-16  Score=156.56  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=120.0

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      ..|.|||++|+.+|++.  ++++|++ |++++...+...|+|.+|+..|+.++|++||.+++|||.-|-+|-|||-+|+.
T Consensus       158 e~GfTpLiWAaa~G~i~--vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr  235 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIP--VVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR  235 (296)
T ss_pred             ccCchHhHHHHhcCchH--HHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec
Confidence            34789999999999998  7999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccc
Q 003660          613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~  672 (805)
                      .||.+||+.||..||+++.      .+..|.+++++|+..|+. +|+..+++-+...+.+
T Consensus       236 gnhvkcve~Ll~sGAd~t~------e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  236 GNHVKCVESLLNSGADVTQ------EDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             CChHHHHHHHHhcCCCccc------ccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            9999999999999999998      788999999999999998 8888888776554443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.2e-15  Score=176.86  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             CCHHHHHHHhCCCCCC----cccccchHHHHHHc-----CCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcC---CH
Q 003660          517 NSWAYLFKSVGDKRTS----LPEAKDSFFELTLK-----SKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLG---YT  583 (805)
Q Consensus       517 ~~~~~li~~l~~~~~~----~~~~~t~L~~Aa~~-----~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G---~~  583 (805)
                      +...++++.+.+.+.+    ...+.||||.++..     +...  ++++|++ |+++|.+|..|+||||+|+..|   +.
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~--iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~  125 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLD--IVKILIENGADINKKNSDGETPLYCLLSNGYINNL  125 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHH--HHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChH
Confidence            4455666666555444    34688999988753     2223  7888888 9999999999999999999876   67


Q ss_pred             HHHHHHHHCCCCCCcccCCCCchhhHHHhcCC---HHHHHHHHHcCCCCCCCCCCCCC-CCCCCcHHHHHHHcCC----H
Q 003660          584 WAILLFSWSGLSLDFRDKYGWTALHWAAYYGR---EKMVVDLLSAGAKPNLVTDPTSQ-NPGGLNAADIASKKGF----D  655 (805)
Q Consensus       584 ~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~---~~iV~~LL~~GAd~n~~td~~~~-d~~G~TpL~lA~~~g~----~  655 (805)
                      +++++|+++|+++|.+|..|+||||+|+..|+   .+++++|++.|++++.      + +..|.||||.+...+.    .
T Consensus       126 ~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~------~~~~~~~t~Lh~~~~~~~~~~~~  199 (489)
T PHA02798        126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT------HNNKEKYDTLHCYFKYNIDRIDA  199 (489)
T ss_pred             HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccc------ccCcCCCcHHHHHHHhccccCCH
Confidence            99999999999999999999999999999998   8999999999999987      4 3578999999887654    6


Q ss_pred             HHHHHHHHcccccCccccc
Q 003660          656 GLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       656 ~iv~lLle~Ga~~~~~~~~  674 (805)
                      +++++|+++|++.+..+..
T Consensus       200 ~ivk~Li~~Ga~i~~~~~~  218 (489)
T PHA02798        200 DILKLFVDNGFIINKENKS  218 (489)
T ss_pred             HHHHHHHHCCCCcccCCcc
Confidence            8999999999887665443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.62  E-value=4.7e-16  Score=154.92  Aligned_cols=128  Identities=18%  Similarity=0.073  Sum_probs=115.0

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCC
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGR  615 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~  615 (805)
                      +.+++..+..+.++..  + .++....+|..|+.|.|||.||++.|++.+|++||..||+++..-+...|+|.+|+..|.
T Consensus       129 p~s~~slsVhql~L~~--~-~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggy  205 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDV--V-DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGY  205 (296)
T ss_pred             cCChhhHHHHHHHHHH--H-HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCCh
Confidence            4577888888776652  1 222367899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccc
Q 003660          616 EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       616 ~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~  672 (805)
                      .++|++||.++.|+|.      .|.+|.|||-+|++.||.+|++.|++.|++....+
T Consensus       206 tdiV~lLL~r~vdVNv------yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  206 TDIVELLLTREVDVNV------YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             HHHHHHHHhcCCCcce------eccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            9999999999999999      89999999999999999999999999998876543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.61  E-value=9e-16  Score=162.58  Aligned_cols=131  Identities=19%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc--CCCCCccCCCCChHHHHHHHc-----CCHHHHHHHHHCCCCCCcccC-CCCch
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAML-----GYTWAILLFSWSGLSLDFRDK-YGWTA  606 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~--Gadin~~D~~G~T~LH~Aa~~-----G~~~~v~~LL~~Gadvn~~D~-~G~Tp  606 (805)
                      +|.|.||+++...++.  ++..|++  -+++|..+.-|.||+++||..     .+..+|..|...| |||++-. .|.|+
T Consensus       267 NGNTALHYsVSHaNF~--VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTA  343 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFD--VVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTA  343 (452)
T ss_pred             CCCeeeeeeecccchH--HHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchh
Confidence            4678888888888887  6777776  568888888888888887754     2456777777665 6777654 48888


Q ss_pred             hhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-ccccCccccc
Q 003660          607 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ-ALVAQFNDMT  674 (805)
Q Consensus       607 Lh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~-Ga~~~~~~~~  674 (805)
                      |++|+.+|+.++|+.||.+|||+|+      +|.+|.|+|++|+.+||++|+++||.. +++..+.+..
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdVNi------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~D  406 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADVNI------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVD  406 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCCcc------ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCC
Confidence            8888888888888888888888888      788888888888888888888888765 3444444443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.61  E-value=7e-15  Score=175.38  Aligned_cols=124  Identities=22%  Similarity=0.184  Sum_probs=105.5

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHH--HcCCHHHHHHHHHCCCCCCcccC---CC------
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCA--MLGYTWAILLFSWSGLSLDFRDK---YG------  603 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa--~~G~~~~v~~LL~~Gadvn~~D~---~G------  603 (805)
                      ...+++.|+..++.+  ++++|++ |+++|.+|..|+||||+|+  ..|+.+++++|+++|+++|..|.   .|      
T Consensus       103 ~~~~~~~a~~~~~~e--~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        103 FNIFSYMKSKNVDVD--LIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             cchHHHHHhhcCCHH--HHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence            334555666666766  8898888 9999999999999999654  47899999999999999987654   34      


Q ss_pred             -----CchhhHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcc
Q 003660          604 -----WTALHWAAY-----------YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD--GLAAFLSEQA  665 (805)
Q Consensus       604 -----~TpLh~Aa~-----------~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~--~iv~lLle~G  665 (805)
                           .||||+|+.           .|+.++|++|+++||++|.      +|.+|.||||+|+..|+.  +++++|++ |
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~------~d~~G~TpLh~A~~~g~~~~eivk~Li~-g  253 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS------IDKNYCTALQYYIKSSHIDIDIVKLLMK-G  253 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc------CCCCCCcHHHHHHHcCCCcHHHHHHHHh-C
Confidence                 599999986           5689999999999999999      889999999999999985  79999985 7


Q ss_pred             ccc
Q 003660          666 LVA  668 (805)
Q Consensus       666 a~~  668 (805)
                      ++.
T Consensus       254 ~d~  256 (661)
T PHA02917        254 IDN  256 (661)
T ss_pred             Ccc
Confidence            644

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.60  E-value=2.1e-15  Score=155.22  Aligned_cols=127  Identities=18%  Similarity=0.254  Sum_probs=112.3

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      .+.+..|||+||..|+..  +++.|+. |+.+|..+....||||+||..||.++|..|++..+|+|+.+..|+|||||||
T Consensus        31 ddhgfsplhwaakegh~a--ivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyac  108 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVA--IVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYAC  108 (448)
T ss_pred             cccCcchhhhhhhcccHH--HHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhh
Confidence            356788999999999977  8998888 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccc
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV  667 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~  667 (805)
                      ..|...+++-|+.+||.+++      .|++|.|||+.|.-.-..-+.++--++|-.
T Consensus       109 fwgydqiaedli~~ga~v~i------cnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  109 FWGYDQIAEDLISCGAAVNI------CNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             hhcHHHHHHHHHhccceeee------cccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            99999999999999999999      889999999988654333444444455643

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=5.9e-15  Score=130.66  Aligned_cols=88  Identities=28%  Similarity=0.338  Sum_probs=68.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcC
Q 003660          574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG  653 (805)
Q Consensus       574 LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g  653 (805)
                      ||+||..|+.+++++|++.+.+++.    |.||||+||..|+.+++++|++.|++++.      +|..|.||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINS------QDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-------BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc------cCCCCCCHHHHHHHcC
Confidence            6788888888888888887777776    77788888888888888888888888777      6678888888888888


Q ss_pred             CHHHHHHHHHcccccCcc
Q 003660          654 FDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       654 ~~~iv~lLle~Ga~~~~~  671 (805)
                      +.+++++|+++|++.+.+
T Consensus        71 ~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHHHHTTT-TTSS
T ss_pred             CHHHHHHHHHcCCCCCCc
Confidence            888888888888766543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02917 ankyrin-like protein; Provisional

Probab=99.59  E-value=9.9e-15  Score=174.08  Aligned_cols=152  Identities=10%  Similarity=-0.045  Sum_probs=115.0

Q ss_pred             CHHHHHHHhCCCCCC----cccccchHHHHHHcCCcH--HHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHH
Q 003660          518 SWAYLFKSVGDKRTS----LPEAKDSFFELTLKSKLK--EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFS  590 (805)
Q Consensus       518 ~~~~li~~l~~~~~~----~~~~~t~L~~Aa~~~~l~--~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL  590 (805)
                      +..++++.+.+.+.+    ...+.||||+|+..++..  ..+++.|++ +...|..|.  .+++|+|+..|+.++|++|+
T Consensus        46 ~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll  123 (661)
T PHA02917         46 NNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLV  123 (661)
T ss_pred             CcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHH
Confidence            445666655444333    345789999999988743  225677765 444555443  37788889999999999999


Q ss_pred             HCCCCCCcccCCCCchhhHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC-----------CcHHHHHHH------
Q 003660          591 WSGLSLDFRDKYGWTALHWAA--YYGREKMVVDLLSAGAKPNLVTDPTSQNPGG-----------LNAADIASK------  651 (805)
Q Consensus       591 ~~Gadvn~~D~~G~TpLh~Aa--~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G-----------~TpL~lA~~------  651 (805)
                      ++|+++|..|.+|+||||+|+  ..|+.++|++|+++||+++....   .+..|           .||||+|+.      
T Consensus       124 ~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~---~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~  200 (661)
T PHA02917        124 EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE---DDEYGYAYDDYQPRNCGTVLHLYIISHLYSE  200 (661)
T ss_pred             HcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc---ccccccccccccccccccHHHHHHhhccccc
Confidence            999999999999999999654  57899999999999999986211   22233           699999986      


Q ss_pred             -----cCCHHHHHHHHHcccccCccccc
Q 003660          652 -----KGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       652 -----~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                           .++.+++++|+++|++.+..+..
T Consensus       201 ~~~~~~~~~eiv~~Li~~Gadvn~~d~~  228 (661)
T PHA02917        201 SDTRAYVRPEVVKCLINHGIKPSSIDKN  228 (661)
T ss_pred             ccccccCcHHHHHHHHHCCCCcccCCCC
Confidence                 46899999999999988776543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.59  E-value=6.3e-15  Score=156.27  Aligned_cols=140  Identities=21%  Similarity=0.206  Sum_probs=114.8

Q ss_pred             HHHHHHhCCCCC-C----cccccchHHHHHHcC---CcHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHcCCHHHHHHHH
Q 003660          520 AYLFKSVGDKRT-S----LPEAKDSFFELTLKS---KLKEWLLERVVEGSKTTE-YDVHGQGVIHLCAMLGYTWAILLFS  590 (805)
Q Consensus       520 ~~li~~l~~~~~-~----~~~~~t~L~~Aa~~~---~l~~~lv~~Ll~Gadin~-~D~~G~T~LH~Aa~~G~~~~v~~LL  590 (805)
                      ..+++.+.+.++ +    ...|.||++.+++..   .-..-+++.|-.-+|+|. ....|+|+|++|+..|+.++|+.||
T Consensus       281 F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LL  360 (452)
T KOG0514|consen  281 FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALL  360 (452)
T ss_pred             hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHH
Confidence            445555544432 2    234789999887642   222236777777668998 4568999999999999999999999


Q ss_pred             HCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       591 ~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~-~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      ..|||||.+|.+|.|+|++||.+||.+||++||. .++|+.+      .|.+|.|+|.+|...||.+|.-+|..+-
T Consensus       361 acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL------tD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  361 ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL------TDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee------ecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            9999999999999999999999999999999996 5688777      7899999999999999999999887664

>PHA02795 ankyrin-like protein; Provisional

Probab=99.58  E-value=9.5e-15  Score=164.02  Aligned_cols=132  Identities=10%  Similarity=-0.015  Sum_probs=115.8

Q ss_pred             ccccchHHHHHH--cCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc------cCCCC
Q 003660          534 PEAKDSFFELTL--KSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR------DKYGW  604 (805)
Q Consensus       534 ~~~~t~L~~Aa~--~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~------D~~G~  604 (805)
                      ...+|+||.++.  .++.+  ++++|++ |++++..  .+.||||+|+..|+.+++++|+++|++.+..      +..|.
T Consensus       114 ~~~~~~L~~~~~n~~n~~e--iV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEID--IVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             ccccHHHHHHHHhcCCCHH--HHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            347899999999  66665  8999998 9999984  4589999999999999999999999854322      23588


Q ss_pred             chhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccccc
Q 003660          605 TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       605 TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l  675 (805)
                      ||+|.|+..++.+++++|+++||++|.      +|..|.||||+|+..|+.+++++|+++|++.+..+...
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~------kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G  254 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQ------LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG  254 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCc------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            999999999999999999999999998      89999999999999999999999999999887765543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.58  E-value=6.9e-15  Score=178.38  Aligned_cols=144  Identities=20%  Similarity=0.254  Sum_probs=130.7

Q ss_pred             CCCCCCcccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCc
Q 003660          527 GDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWT  605 (805)
Q Consensus       527 ~~~~~~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~T  605 (805)
                      .+....+.++.|+||.|+..|+..  ++..+++ ++..+...+.|.|+||+|+..++..+++.++.+|++++.++..|.|
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~--~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T  542 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTE--VVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT  542 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCch--HHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc
Confidence            333455778999999999999987  6677777 7778888889999999999999999999999999999999999999


Q ss_pred             hhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccccccc
Q 003660          606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGN  678 (805)
Q Consensus       606 pLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~~~  678 (805)
                      |||.||.+|+.++|++||++||++++      +++.|+||||.|+..|+.+|+.+|+++|++++..+......
T Consensus       543 pLh~A~~~g~v~~VkfLLe~gAdv~a------k~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  543 PLHVAVHYGNVDLVKFLLEHGADVNA------KDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             hHHHHHhcCCchHHHHhhhCCccccc------cCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence            99999999999999999999999999      88999999999999999999999999999998877766553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=1.5e-14  Score=128.14  Aligned_cols=86  Identities=30%  Similarity=0.392  Sum_probs=79.2

Q ss_pred             HHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHH
Q 003660          540 FFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM  618 (805)
Q Consensus       540 L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~i  618 (805)
                      ||.|+..++..  +++.|++ +.+++.    |.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~--~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLE--ILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHH--HHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHH--HHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            78999999988  7888887 877766    8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC
Q 003660          619 VVDLLSAGAKPNL  631 (805)
Q Consensus       619 V~~LL~~GAd~n~  631 (805)
                      +++|+++|++++.
T Consensus        75 ~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   75 VKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHTTT-TTS
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.56  E-value=2.7e-14  Score=167.44  Aligned_cols=143  Identities=13%  Similarity=0.045  Sum_probs=113.4

Q ss_pred             HHHHHHHhCCCCCC---cccccchHHHHHHcCCc---HHHHHHHHHc-CC--CCCccCCCCChHHHH---HHHcC-----
Q 003660          519 WAYLFKSVGDKRTS---LPEAKDSFFELTLKSKL---KEWLLERVVE-GS--KTTEYDVHGQGVIHL---CAMLG-----  581 (805)
Q Consensus       519 ~~~li~~l~~~~~~---~~~~~t~L~~Aa~~~~l---~~~lv~~Ll~-Ga--din~~D~~G~T~LH~---Aa~~G-----  581 (805)
                      ..++++.|...+.+   ...+.||||.|+..++.   .+ ++++|++ |+  ++|.+|..|.||||.   |+..+     
T Consensus       358 ~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~e-IvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~  436 (672)
T PHA02730        358 SIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVN-VVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHC  436 (672)
T ss_pred             cHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHH-HHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccc
Confidence            34555555444332   24678999999888752   23 8888887 76  688899999999984   33332     


Q ss_pred             ----CHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCC-CCCcHHHHHHHc--CC
Q 003660          582 ----YTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNP-GGLNAADIASKK--GF  654 (805)
Q Consensus       582 ----~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~-~G~TpL~lA~~~--g~  654 (805)
                          ..+++++|+.+|+++|.+|..|+||||+|+..++.+++++|+++||++|.      +|. .|.||||+|+..  ++
T Consensus       437 ~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~------~d~~~g~TaL~~Aa~~~~~~  510 (672)
T PHA02730        437 YETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT------TSRSIINTAIQKSSYRRENK  510 (672)
T ss_pred             cchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCcCCcCHHHHHHHhhcCc
Confidence                12568999999999999999999999999999999999999999999998      665 589999999874  78


Q ss_pred             HHHHHHHHHccccc
Q 003660          655 DGLAAFLSEQALVA  668 (805)
Q Consensus       655 ~~iv~lLle~Ga~~  668 (805)
                      .+++++|+++|++.
T Consensus       511 ~eIv~~LLs~ga~i  524 (672)
T PHA02730        511 TKLVDLLLSYHPTL  524 (672)
T ss_pred             HHHHHHHHHcCCCH
Confidence            99999999999654

>PHA02741 hypothetical protein; Provisional

Probab=99.56  E-value=1.7e-14  Score=143.98  Aligned_cols=105  Identities=24%  Similarity=0.261  Sum_probs=93.4

Q ss_pred             CCccCCCCChHHHHHHHcCCHHHHHHHHH------CCCCCCcccCCCCchhhHHHhcCC----HHHHHHHHHcCCCCCCC
Q 003660          563 TTEYDVHGQGVIHLCAMLGYTWAILLFSW------SGLSLDFRDKYGWTALHWAAYYGR----EKMVVDLLSAGAKPNLV  632 (805)
Q Consensus       563 in~~D~~G~T~LH~Aa~~G~~~~v~~LL~------~Gadvn~~D~~G~TpLh~Aa~~G~----~~iV~~LL~~GAd~n~~  632 (805)
                      ++.+|..|.|+||+||..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|++.|++++. 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            45678899999999999999999998853      478999999999999999999999    5899999999999998 


Q ss_pred             CCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHH-cccccCcccc
Q 003660          633 TDPTSQNP-GGLNAADIASKKGFDGLAAFLSE-QALVAQFNDM  673 (805)
Q Consensus       633 td~~~~d~-~G~TpL~lA~~~g~~~iv~lLle-~Ga~~~~~~~  673 (805)
                           +|. .|.||||+|+..++.+++++|+. .|++.+..+.
T Consensus        93 -----~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         93 -----QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             -----CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence                 774 89999999999999999999998 5877665543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.54  E-value=4.8e-15  Score=152.54  Aligned_cols=127  Identities=21%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             HHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHH
Q 003660          541 FELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV  619 (805)
Q Consensus       541 ~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV  619 (805)
                      +.-|..|+-.+ +.-.|.+ ..|.|.-|..|.+||||||..|+..+++.|+.+|+.+|..+....||||+|+.+||.++|
T Consensus         5 f~wcregna~q-vrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    5 FGWCREGNAFQ-VRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhhhhcCCeEE-EEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            44455565332 1111223 668889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccc
Q 003660          620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       620 ~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                      ..||+..+|+|+      .|..|.||||+||..|...|++-|+..|+..++.+..
T Consensus        84 qkll~~kadvna------vnehgntplhyacfwgydqiaedli~~ga~v~icnk~  132 (448)
T KOG0195|consen   84 QKLLSRKADVNA------VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKK  132 (448)
T ss_pred             HHHHHHhcccch------hhccCCCchhhhhhhcHHHHHHHHHhccceeeecccC
Confidence            999999999999      7899999999999999999999999999877665544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=1.6e-14  Score=160.47  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=116.0

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc------------
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR------------  599 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~------------  599 (805)
                      ..++.|+||.+|...+..  ++.+|++ |++||..|..||||||.|+..||..++++|+..|+++-..            
T Consensus        70 n~DglTalhq~~id~~~e--~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e  147 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDNLE--MVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAE  147 (527)
T ss_pred             CCccchhHHHHHhcccHH--HHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence            456889999999999877  7888888 9999999999999999999999999999999877653332            


Q ss_pred             -----------------------------------------------cCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCC
Q 003660          600 -----------------------------------------------DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLV  632 (805)
Q Consensus       600 -----------------------------------------------D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~  632 (805)
                                                                     +..|-|+||.|+..|..++.++|+.+|.++++ 
T Consensus       148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~-  226 (527)
T KOG0505|consen  148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI-  226 (527)
T ss_pred             CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc-
Confidence                                                           34588999999999999999999999999998 


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccc
Q 003660          633 TDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       633 td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                           +|.+|+||||.|+..|+.+++++|+++|++.+.....
T Consensus       227 -----~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  227 -----KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             -----ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhc
Confidence                 8999999999999999999999999999877654443

>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

Probab=99.52  E-value=3.5e-14  Score=120.83  Aligned_cols=72  Identities=22%  Similarity=0.357  Sum_probs=65.3

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCC-CCCCeeEEEEEeCCCCcc
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPP-HSPGLFLLYMSLDGHKPI  444 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pp-h~~G~V~l~v~~~n~~~~  444 (805)
                      .|+.++|+||++.||+||+|+|.+|.++       +.|+||++.+-.++|++.+|+|.+|| |.||.|.++++.....-|
T Consensus         2 ~I~ai~P~eG~~tGGt~VtI~GenF~~g-------l~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~   74 (85)
T cd01175           2 CIKAISPSEGWTTGGATVIIIGDNFFDG-------LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFC   74 (85)
T ss_pred             cccEecCCCCcccCCeEEEEECCCCCCC-------cEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeec
Confidence            5999999999999999999999766543       89999999999999999999999999 799999999999776544

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=158.32  Aligned_cols=122  Identities=20%  Similarity=0.142  Sum_probs=84.6

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc------CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCC------------
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE------GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS------------  595 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~------Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gad------------  595 (805)
                      ..+..++|+|+..|..+  ..+..+.      +..+|..+..|.||||.|+..|+.++++.+|..|+.            
T Consensus       185 ~~~~~~iH~aa~s~s~e--~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~  262 (929)
T KOG0510|consen  185 IDGNFPIHEAARSGSKE--CMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQE  262 (929)
T ss_pred             CcCCchHHHHHHhcchh--hhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHH
Confidence            34556666666666654  3333322      445666777777777777777777777777766643            


Q ss_pred             ---CCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 003660          596 ---LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE  663 (805)
Q Consensus       596 ---vn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle  663 (805)
                         +|..|++|.||||+||..|+.+++..|+..||+++.      ++.++.||||.|+..|...+++-|++
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~------kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS------KNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc------cCCCCCCchHHHHHcccHHHHHHHHh
Confidence               233467777777777777777777777777777777      67777777777777777777777777

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=5.5e-14  Score=156.14  Aligned_cols=139  Identities=22%  Similarity=0.346  Sum_probs=124.5

Q ss_pred             chHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCH
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~  616 (805)
                      -.++.||..+++.+  ++.|+. |+++|..+.+|.|+||-+|.-.+.+||++|+++|++||..|..||||||-|+.+||.
T Consensus        42 a~~l~A~~~~d~~e--v~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEE--VRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHH--HHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccH
Confidence            46778889999886  455555 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCC-----------------------------------------------------CCCCCCCCCC
Q 003660          617 KMVVDLLSAGAKPNLVT-----------------------------------------------------DPTSQNPGGL  643 (805)
Q Consensus       617 ~iV~~LL~~GAd~n~~t-----------------------------------------------------d~~~~d~~G~  643 (805)
                      .++.+|+.+||++.+++                                                     ++++.+..|.
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            99999999999987763                                                     6666777799


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcccccCccccccccc
Q 003660          644 NAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGN  678 (805)
Q Consensus       644 TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~~~  678 (805)
                      |+||+|+.+|+.+++++|+++|.+..+++......
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtP  234 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTP  234 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccCcccccccCCCc
Confidence            99999999999999999999999888887765443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.50  E-value=6.4e-14  Score=139.46  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=94.6

Q ss_pred             CCCCCccCCCCChHHHHHHHcCCH----HHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHH---HHHHHHcCCCCCCC
Q 003660          560 GSKTTEYDVHGQGVIHLCAMLGYT----WAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM---VVDLLSAGAKPNLV  632 (805)
Q Consensus       560 Gadin~~D~~G~T~LH~Aa~~G~~----~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~i---V~~LL~~GAd~n~~  632 (805)
                      |++++..+..+.++||.||..|+.    +++++|+..|++++.+|..|+||||+|+..|+.++   +++|++.|++++. 
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~-   88 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA-   88 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC-
Confidence            567777888999999999999997    56667889999999999999999999999998654   7999999999998 


Q ss_pred             CCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cccccCccc
Q 003660          633 TDPTSQN-PGGLNAADIASKKGFDGLAAFLSE-QALVAQFND  672 (805)
Q Consensus       633 td~~~~d-~~G~TpL~lA~~~g~~~iv~lLle-~Ga~~~~~~  672 (805)
                           +| ..|.||||+|+..|+.+++++|++ .|++....+
T Consensus        89 -----~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         89 -----RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             -----CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC
Confidence                 77 589999999999999999999995 787766544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.4e-13  Score=159.98  Aligned_cols=143  Identities=15%  Similarity=0.097  Sum_probs=117.6

Q ss_pred             HHHHHHHhCCCCCCcc--cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCC--ChHHHHHHHcCCHH---HHHHHH
Q 003660          519 WAYLFKSVGDKRTSLP--EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHG--QGVIHLCAMLGYTW---AILLFS  590 (805)
Q Consensus       519 ~~~li~~l~~~~~~~~--~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G--~T~LH~Aa~~G~~~---~v~~LL  590 (805)
                      ..++++.+.+.+....  .....++.||..++..  ++++|++ |+++|.+|..|  .||||+|+......   ++++|+
T Consensus       320 ~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~e--IVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI  397 (631)
T PHA02792        320 YINVIKCMIDEGATLYRFKHINKYFQKFDNRDPK--VVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCK  397 (631)
T ss_pred             cHHHHHHHHHCCCccccCCcchHHHHHHHcCCHH--HHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHH
Confidence            3456666666665432  3456788998888877  8999998 99999988775  69999987766543   578889


Q ss_pred             HCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH----------cCCHHHHHH
Q 003660          591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK----------KGFDGLAAF  660 (805)
Q Consensus       591 ~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~----------~g~~~iv~l  660 (805)
                      .+|+++|.+|..|+||||+|+..++.+++++|+++||+++.      +|..|.|||++|+.          ....+++++
T Consensus       398 s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~------kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~l  471 (631)
T PHA02792        398 PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI------TTKYGSTCIGICVILAHACIPEIAELYIKILEI  471 (631)
T ss_pred             hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998      88999999999976          223567888


Q ss_pred             HHHcccccC
Q 003660          661 LSEQALVAQ  669 (805)
Q Consensus       661 Lle~Ga~~~  669 (805)
                      |+++|.+..
T Consensus       472 LLs~~p~i~  480 (631)
T PHA02792        472 ILSKLPTIE  480 (631)
T ss_pred             HHhcCCChh
Confidence            898885543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=5e-13  Score=122.89  Aligned_cols=121  Identities=26%  Similarity=0.344  Sum_probs=111.7

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      ..+.++|+.|+..++..  +++.|++ |.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+.
T Consensus         5 ~~g~t~l~~a~~~~~~~--~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           5 EDGRTPLHLAASNGHLE--VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCCCCHHHHHHHcCcHH--HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45789999999999975  6777777 88888999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 003660          613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS  662 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLl  662 (805)
                      .++.+++++|+..|.+.+.      .|..|.||+++|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNA------RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999988877      7889999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.47  E-value=2.2e-13  Score=147.41  Aligned_cols=106  Identities=12%  Similarity=-0.021  Sum_probs=92.6

Q ss_pred             CccCCCCChH-HHHHHHcCCHHHHHHHHHCCCCCCccc----CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 003660          564 TEYDVHGQGV-IHLCAMLGYTWAILLFSWSGLSLDFRD----KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQ  638 (805)
Q Consensus       564 n~~D~~G~T~-LH~Aa~~G~~~~v~~LL~~Gadvn~~D----~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~  638 (805)
                      -.+|..|.|+ ||.|+..|+.+++++|+++|+++|.++    ..|.||||+|+..|+.+++++|+++||+++.      +
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~------~   99 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNR------Y   99 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCc------c
Confidence            3467777775 555666789999999999999999984    5899999999999999999999999999998      4


Q ss_pred             -CCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccccc
Q 003660          639 -NPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       639 -d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l  675 (805)
                       +..|.||||+|+..|+.+++++|+++|++.+..+...
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G  137 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDM  137 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence             3579999999999999999999999999988765444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.47  E-value=1.9e-13  Score=160.29  Aligned_cols=133  Identities=9%  Similarity=-0.024  Sum_probs=114.1

Q ss_pred             ccccchHHHHHHcCC--cHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcC--CHHHHHHHHHCCC--CCCcccCCCCch
Q 003660          534 PEAKDSFFELTLKSK--LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLG--YTWAILLFSWSGL--SLDFRDKYGWTA  606 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~--l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G--~~~~v~~LL~~Ga--dvn~~D~~G~Tp  606 (805)
                      ..|.|+||.|+..++  ..+ ++++|++ |++++.+|..|+||||+|+..|  +.++|++|+..|+  +++..|.-+++|
T Consensus        39 ~~G~TaLh~A~~~~~~~~~e-ivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIK-IVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHH-HHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            358899999999875  133 8899998 9999999999999999999977  7999999999965  558888889999


Q ss_pred             hhHHHh--cCCHHHHHHHHH-cCCCCCCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccccC
Q 003660          607 LHWAAY--YGREKMVVDLLS-AGAKPNLVTDPTSQN-PGGLNAADIASKKGFDGLAAFLSEQALVAQ  669 (805)
Q Consensus       607 Lh~Aa~--~G~~~iV~~LL~-~GAd~n~~td~~~~d-~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~  669 (805)
                      ||.++.  .++.++|++|+. .|++++...  +.++ ..|.+|+++|+..++.+++++|+++|++..
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~--~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNT--NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhh--hhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            999999  899999999996 778888621  1122 389999999999999999999999998873

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.47  E-value=2.6e-13  Score=166.78  Aligned_cols=115  Identities=17%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             CCCcccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC--------------------------
Q 003660          530 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY--------------------------  582 (805)
Q Consensus       530 ~~~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~--------------------------  582 (805)
                      +.....+.||||.|+..|+..  ++++|++ |+++|.+|..|.||||+|+..|+                          
T Consensus       552 n~~d~~G~TpLh~Aa~~g~~~--~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~A  629 (823)
T PLN03192        552 DIGDSKGRTPLHIAASKGYED--CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTA  629 (823)
T ss_pred             CCCCCCCCCHHHHHHHcChHH--HHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHH
Confidence            334456899999999999876  7788888 99999999999999886655554                          


Q ss_pred             -----HHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC-CcHHHHHHHc
Q 003660          583 -----TWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGG-LNAADIASKK  652 (805)
Q Consensus       583 -----~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G-~TpL~lA~~~  652 (805)
                           .++++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+++.      .|..| .||++++...
T Consensus       630 a~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~------~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        630 AKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK------ANTDDDFSPTELRELL  699 (823)
T ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC------CCCCCCCCHHHHHHHH
Confidence                 5566677889999999999999999999999999999999999999998      67777 9999887543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=5.4e-13  Score=135.15  Aligned_cols=123  Identities=31%  Similarity=0.429  Sum_probs=113.3

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CCCcccCCCCc
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGY-----TWAILLFSWSGL---SLDFRDKYGWT  605 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~-----~~~v~~LL~~Ga---dvn~~D~~G~T  605 (805)
                      ...++++.++..+...  ++..++. |.+++.+|..|.||||+|+..|+     .++++.|+..|+   +.+.+|..|+|
T Consensus        72 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~t  149 (235)
T COG0666          72 DGRLPLHSAASKGDDK--IVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT  149 (235)
T ss_pred             cccCHHHHHHHcCcHH--HHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCc
Confidence            3678999999998876  4555555 99999999999999999999999     999999999999   66667999999


Q ss_pred             hhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       606 pLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      |||+|+..|+.+++++|++.|++++.      .+..|.|++++|+..++.+++..|+..+
T Consensus       150 pl~~A~~~~~~~~~~~ll~~~~~~~~------~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         150 PLHWAALNGDADIVELLLEAGADPNS------RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hhHHHHHcCchHHHHHHHhcCCCCcc------cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999998      7899999999999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=2.1e-13  Score=149.90  Aligned_cols=119  Identities=22%  Similarity=0.302  Sum_probs=104.9

Q ss_pred             hHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHH
Q 003660          539 SFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREK  617 (805)
Q Consensus       539 ~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~  617 (805)
                      -|+-|++.|.++  |++.++. -.|+...+..|-|+||-|+..||.++|++||..|+|||+.|.+||||||+||.+++..
T Consensus       553 LLLDaaLeGEld--lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELD--LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHH--HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            467788999887  6776665 6677788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHc
Q 003660          618 MVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS--KKGFDGLAAFLSEQ  664 (805)
Q Consensus       618 iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~--~~g~~~iv~lLle~  664 (805)
                      +++.|++.||.+-+.|     -.++.||.+-+-  ..|+.+|.+||...
T Consensus       631 ~ckqLVe~GaavfAsT-----lSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFAST-----LSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEeee-----cccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999998744     368899998775  35899999999654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.42  E-value=3.2e-13  Score=132.30  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=86.9

Q ss_pred             ccccchHHHHHHcCCcHH-HHHHHHHc-CCCCCccC-CCCChHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCchhhH
Q 003660          534 PEAKDSFFELTLKSKLKE-WLLERVVE-GSKTTEYD-VHGQGVIHLCAMLGYTWAILLFSW-SGLSLDFRDKYGWTALHW  609 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~-~lv~~Ll~-Gadin~~D-~~G~T~LH~Aa~~G~~~~v~~LL~-~Gadvn~~D~~G~TpLh~  609 (805)
                      ..+.|+||.|+..++... -++++|++ |+++|.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+
T Consensus        53 ~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~  132 (154)
T PHA02736         53 RHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV  132 (154)
T ss_pred             CCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHH
Confidence            357899999999988641 15667777 99999998 589999999999999999999997 599999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCC
Q 003660          610 AAYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       610 Aa~~G~~~iV~~LL~~GAd~n  630 (805)
                      |+..|+.+++++|+..|++++
T Consensus       133 A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        133 ACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.41  E-value=2.4e-13  Score=155.52  Aligned_cols=125  Identities=20%  Similarity=0.185  Sum_probs=118.0

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhc
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~  613 (805)
                      ++.|.||+|+++|+..  ++.+|++ .+-++..|..|.+|||+||+.|+.++++.|+.++..+|.....|.||||.|+.+
T Consensus        48 ~gfTalhha~Lng~~~--is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQ--ISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             cchhHHHHHHhcCchH--HHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            5789999999999988  8888888 888888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccc
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV  667 (805)
Q Consensus       614 G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~  667 (805)
                      ||.+++.+||.+|+|+-.      +|+.+.|+|++|+..|..+++++|+.....
T Consensus       126 gh~dvv~~Ll~~~adp~i------~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~  173 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFI------RNNSKETVLDLASRFGRAEVVQMLLQKKFP  173 (854)
T ss_pred             cchHHHHHHHhcCCCccc------cCcccccHHHHHHHhhhhHHHHHHhhhccc
Confidence            999999999999999988      889999999999999999999999988533

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.41  E-value=5.6e-13  Score=162.38  Aligned_cols=154  Identities=17%  Similarity=0.022  Sum_probs=116.9

Q ss_pred             hhhhhhcccCCHHHHHHHhCCCCCCcccccchHHHHHHcCC-cHHHHHHHHHc-CCC------CCc----cCCCCChHHH
Q 003660          508 FASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSK-LKEWLLERVVE-GSK------TTE----YDVHGQGVIH  575 (805)
Q Consensus       508 ~a~~i~~~~~~~~~li~~l~~~~~~~~~~~t~L~~Aa~~~~-l~~~lv~~Ll~-Gad------in~----~D~~G~T~LH  575 (805)
                      .+....+..++..++++.+...+.....|.|+||.|+..+. ..+.++..+.. +.+      ++.    .+..|.||||
T Consensus        54 t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLh  133 (743)
T TIGR00870        54 SALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALH  133 (743)
T ss_pred             hHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHH
Confidence            33333555677788888876666444568899999887322 12224455444 321      111    2356999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCccc--------------CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 003660          576 LCAMLGYTWAILLFSWSGLSLDFRD--------------KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPG  641 (805)
Q Consensus       576 ~Aa~~G~~~~v~~LL~~Gadvn~~D--------------~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~  641 (805)
                      +||..|+.++|++|+++|+++|.++              ..|.||||+|+..|+.+++++|++.|+|++.      +|..
T Consensus       134 lAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~------~d~~  207 (743)
T TIGR00870       134 LAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT------ADSL  207 (743)
T ss_pred             HHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh------Hhhh
Confidence            9999999999999999999999764              2589999999999999999999999999988      8899


Q ss_pred             CCcHHHHHHHcC---------CHHHHHHHHHcccc
Q 003660          642 GLNAADIASKKG---------FDGLAAFLSEQALV  667 (805)
Q Consensus       642 G~TpL~lA~~~g---------~~~iv~lLle~Ga~  667 (805)
                      |.||||+|+..+         ...+.+++++.++.
T Consensus       208 g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       208 GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999986         34566777776644

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.41  E-value=5.6e-13  Score=128.87  Aligned_cols=121  Identities=18%  Similarity=0.145  Sum_probs=101.5

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      -.++.||||.|+..|++.  ++..|+. |++++.+...||||||-||.-.+.+++.+||.+|+|||+.....+||||+||
T Consensus        94 D~D~YTpLHRAaYn~h~d--iv~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa  171 (228)
T KOG0512|consen   94 DEDEYTPLHRAAYNGHLD--IVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAA  171 (228)
T ss_pred             ccccccHHHHHHhcCchH--HHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhh
Confidence            356889999999999998  5666555 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCH-HHHHHHH-HcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003660          612 YYGRE-KMVVDLL-SAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       612 ~~G~~-~iV~~LL-~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      ...+. ..+.+|+ ..+..+..      ++..+.||+++|.+.+   +..+|.+.
T Consensus       172 ~~rn~r~t~~~Ll~dryi~pg~------~nn~eeta~~iARRT~---~s~~lfe~  217 (228)
T KOG0512|consen  172 GNRNSRDTLELLLHDRYIHPGL------KNNLEETAFDIARRTS---MSHYLFEI  217 (228)
T ss_pred             cccchHHHHHHHhhccccChhh------hcCccchHHHHHHHhh---hhHHHHHH
Confidence            87654 4566665 46677766      8899999999998764   33444443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=4.3e-13  Score=117.21  Aligned_cols=104  Identities=25%  Similarity=0.303  Sum_probs=88.2

Q ss_pred             hHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHH
Q 003660          539 SFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM  618 (805)
Q Consensus       539 ~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~i  618 (805)
                      .+.++..+|.+.+ +.+.+.+|.++|..- .|+||||+||-+|...++++|+..||+|+.+|+.|-|||.-|+..||.+|
T Consensus         5 ~~~W~vkNG~~De-Vk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDE-VKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHH-HHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            4567777788776 666666687777643 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHH
Q 003660          619 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS  650 (805)
Q Consensus       619 V~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~  650 (805)
                      |++||+.||+-..      +.++|.+.+..+-
T Consensus        83 VklLL~~GAdrt~------~~PdG~~~~eate  108 (117)
T KOG4214|consen   83 VKLLLQNGADRTI------HAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHcCcccce------eCCCchhHHhhcc
Confidence            9999999999877      6688888776543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.40  E-value=4.7e-13  Score=163.10  Aligned_cols=130  Identities=19%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccC--------------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCc
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYD--------------VHGQGVIHLCAMLGYTWAILLFSWSGLSLDF  598 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D--------------~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~  598 (805)
                      ..+.||||.|+..++.+  ++++|++ |+++|.++              ..|.||||+|+..|+.+++++|++.|+|+|.
T Consensus       126 ~~G~TpLhlAa~~~~~e--iVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       126 TPGITALHLAAHRQNYE--IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             CCCCcHHHHHHHhCCHH--HHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence            45889999999999987  8898888 99998653              3599999999999999999999999999999


Q ss_pred             ccCCCCchhhHHHhcC---------CHHHHHHHHHcCCCCCCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          599 RDKYGWTALHWAAYYG---------REKMVVDLLSAGAKPNLVT-DPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       599 ~D~~G~TpLh~Aa~~G---------~~~iV~~LL~~GAd~n~~t-d~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      +|..|+||||+|+..+         ...+.+++++.++...... ..+..|.+|.||||+|+..|+.+++++|++.+
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            9999999999999987         3456677777766652200 00237899999999999999999999999964

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=2.1e-12  Score=133.39  Aligned_cols=124  Identities=24%  Similarity=0.261  Sum_probs=108.9

Q ss_pred             cccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCc-ccCCCCchhhHH
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF-RDKYGWTALHWA  610 (805)
Q Consensus       533 ~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~-~D~~G~TpLh~A  610 (805)
                      .++...+|+.+..+|+... .. .|+. --++|.+|..|+|+|..|+..|+.++|++||+.|+|||. ++..++||||+|
T Consensus         9 ld~~~~~Lle~i~Kndt~~-a~-~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEA-AL-ALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             ccchhhHHHHHHccCcHHH-HH-HHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            3456789999999999875 33 3445 345999999999999999999999999999999999996 455699999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003660          611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       611 a~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      |..|+.++.++|++.||.+..      .|.-|+|+..+|+.-|+.+||..+-.+
T Consensus        87 ALSGn~dvcrllldaGa~~~~------vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYL------VNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHcCCchHHHHHHhccCcccc------ccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999998      779999999999999999999877443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.37  E-value=2e-12  Score=150.36  Aligned_cols=132  Identities=14%  Similarity=-0.007  Sum_probs=112.0

Q ss_pred             hCCCCCCcccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHH-cCCHHHHHHHHHCCCCCC------
Q 003660          526 VGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAM-LGYTWAILLFSWSGLSLD------  597 (805)
Q Consensus       526 l~~~~~~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~-~G~~~~v~~LL~~Gadvn------  597 (805)
                      +...+..-.++.++++.-|..+.-.+ ++++|+. |+++|.++..|.||||+|+. .|+.+++++|++.||+++      
T Consensus        61 ~~~~~~~n~~~~~~~~~~~s~n~~lE-lvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g  139 (631)
T PHA02792         61 LSSVDYKNINDFDIFEYLCSDNIDIE-LLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYG  139 (631)
T ss_pred             HhCCCcCccCCccHHHHHHHhcccHH-HHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccC
Confidence            34444444567789987776555444 8888888 99999999999999999976 699999999999998743      


Q ss_pred             ------------------------------cccCCCCchhhHHHhcC-------CHHHHHHHHHcCCCCCCCCCCCCCCC
Q 003660          598 ------------------------------FRDKYGWTALHWAAYYG-------REKMVVDLLSAGAKPNLVTDPTSQNP  640 (805)
Q Consensus       598 ------------------------------~~D~~G~TpLh~Aa~~G-------~~~iV~~LL~~GAd~n~~td~~~~d~  640 (805)
                                                    ..|..|.||||+|+..+       +.+++++|+++|++++.      +|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~------~d~  213 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY------YTY  213 (631)
T ss_pred             cchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc------cCC
Confidence                                          34567999999999999       89999999999999998      788


Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHHHc
Q 003660          641 GGLNAADIASKKG--FDGLAAFLSEQ  664 (805)
Q Consensus       641 ~G~TpL~lA~~~g--~~~iv~lLle~  664 (805)
                      .|.||||+|+.+.  ..+++++|+..
T Consensus       214 ~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        214 REHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             CCChHHHHHHHcccchHHHHHHHHhc
Confidence            9999999999999  78999999874

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.30  E-value=7.7e-12  Score=109.44  Aligned_cols=95  Identities=20%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003660          572 GVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK  651 (805)
Q Consensus       572 T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~  651 (805)
                      --+.|+..+|..+-|+..+..|.+||..- .|+||||+||-+|..+++++|+..||+++.      +|+.|-|||--|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~------kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQD------KDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCC------ccccCCcHHHHHHH
Confidence            34689999999999999999998888665 899999999999999999999999999998      99999999999999


Q ss_pred             cCCHHHHHHHHHcccccCcccc
Q 003660          652 KGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       652 ~g~~~iv~lLle~Ga~~~~~~~  673 (805)
                      .||.+||++|+..|++......
T Consensus        77 EGH~~cVklLL~~GAdrt~~~P   98 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTIHAP   98 (117)
T ss_pred             HhhHHHHHHHHHcCcccceeCC
Confidence            9999999999999988765433

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.28  E-value=3.6e-11  Score=110.47  Aligned_cols=99  Identities=26%  Similarity=0.321  Sum_probs=91.7

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCc
Q 003660          565 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLN  644 (805)
Q Consensus       565 ~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~T  644 (805)
                      ..|..|.||||+|+..|+.++++.|+..|++++..|..|.||||+|+..+..+++++|+..|++++.      .+..|.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~------~~~~~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA------RDKDGNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999999998877      7789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcccccC
Q 003660          645 AADIASKKGFDGLAAFLSEQALVAQ  669 (805)
Q Consensus       645 pL~lA~~~g~~~iv~lLle~Ga~~~  669 (805)
                      |+|+|+..++.+++++|+..|.+..
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~  100 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVN  100 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            9999999999999999999984433

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.28  E-value=2.9e-12  Score=104.25  Aligned_cols=55  Identities=40%  Similarity=0.643  Sum_probs=21.7

Q ss_pred             HHHCC-CCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 003660          589 FSWSG-LSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA  649 (805)
Q Consensus       589 LL~~G-advn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA  649 (805)
                      ||++| +++|.+|..|.||||+||..|+.++|++|++.|+++++      +|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~------~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA------KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC------CcCCCCCHHHhC
Confidence            34455 56666666666666666666666666666666666665      556666666655

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=7.9e-12  Score=100.69  Aligned_cols=54  Identities=31%  Similarity=0.374  Sum_probs=40.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHH
Q 003660          570 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL  623 (805)
Q Consensus       570 G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL  623 (805)
                      |+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=1.3e-11  Score=148.02  Aligned_cols=105  Identities=19%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             chHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCH
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~  616 (805)
                      ..|+.|+..|+..  .+++|++ |+++|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~--~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAV--GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHH--HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            4688999999987  6777777 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCCCCCCCCCCCCCCCcHHHHHH
Q 003660          617 KMVVDLLSA-------GAKPNLVTDPTSQNPGGLNAADIAS  650 (805)
Q Consensus       617 ~iV~~LL~~-------GAd~n~~td~~~~d~~G~TpL~lA~  650 (805)
                      +++++|+.+       |++++.      .+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~------~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKP------DSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCc------cccCCCCccchhh
Confidence            999999998       666665      6777877766554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.24  E-value=2.6e-11  Score=140.82  Aligned_cols=122  Identities=19%  Similarity=0.200  Sum_probs=111.2

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCcc--------CC---------------CCChHHHHHHHcCCHHHHHHHH
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEY--------DV---------------HGQGVIHLCAMLGYTWAILLFS  590 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~--------D~---------------~G~T~LH~Aa~~G~~~~v~~LL  590 (805)
                      .|.++||.|..+.+.+  ++.+|++ |||++.+        +.               .|..||-+||..+..+++++|+
T Consensus       183 ~GqSaLHiAIv~~~~~--~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAE--LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             cCcchHHHHHHhccHH--HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            4789999999999987  8888888 9998841        11               2678999999999999999999


Q ss_pred             HCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003660          591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK--PNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       591 ~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd--~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      ++|||+|++|.+|+|.||..+.+-..++-.++|++|++  ..+      +|..|.|||.+|+..|..++.+.+++.
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v------~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHV------RNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccc------cccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999999999889999999999999  444      899999999999999999999999998

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.24  E-value=1.2e-11  Score=141.79  Aligned_cols=131  Identities=17%  Similarity=0.150  Sum_probs=114.1

Q ss_pred             chHHHHHHcCCcHHHHHHHHHc--C------------CCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC
Q 003660          538 DSFFELTLKSKLKEWLLERVVE--G------------SKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYG  603 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~--G------------adin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G  603 (805)
                      +-|..|+..++..  .+.++++  +            .++|..|..|.|+||.||..|+..++++|+++.+-++..|..|
T Consensus         5 qel~~a~ka~d~~--tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg   82 (854)
T KOG0507|consen    5 QELIDACKAGDYD--TVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKG   82 (854)
T ss_pred             hhHHHhhhcccHH--HHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccC
Confidence            4567777777776  3444544  1            2467789999999999999999999999999999999999999


Q ss_pred             CchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccccc
Q 003660          604 WTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA  676 (805)
Q Consensus       604 ~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~  676 (805)
                      .+|||+|++.|+.++|++|+..+..+|+      .+..|.||||+|+.+||.+++.+|+.+|+++-..+-...
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na------~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~  149 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNA------VNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKE  149 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCc------ccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccc
Confidence            9999999999999999999999988888      678999999999999999999999999998877665543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.24  E-value=2.9e-11  Score=145.20  Aligned_cols=87  Identities=28%  Similarity=0.343  Sum_probs=84.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003660          572 GVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK  651 (805)
Q Consensus       572 T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~  651 (805)
                      +.||.||..|+.++++.|+..|+++|.+|..|+||||+||..|+.+++++|+++|++++.      +|..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~------~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL------LDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999998      88999999999999


Q ss_pred             cCCHHHHHHHHHc
Q 003660          652 KGFDGLAAFLSEQ  664 (805)
Q Consensus       652 ~g~~~iv~lLle~  664 (805)
                      .|+.+++++|+++
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            9999999999999

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.22  E-value=9e-12  Score=101.35  Aligned_cols=51  Identities=29%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             C-CCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHH
Q 003660          560 G-SKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       560 G-adin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~A  610 (805)
                      | +++|..|..|.||||+||..|+.+++++|+..|++++.+|..|+||||+|
T Consensus         5 ~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    5 GPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            5 88999999999999999999999999999999999999999999999997

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.17  E-value=7.6e-11  Score=137.07  Aligned_cols=127  Identities=20%  Similarity=0.218  Sum_probs=107.2

Q ss_pred             ccccchHHHHHHcCC--cHHHHHHHHHc--CCCCCc----cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc------
Q 003660          534 PEAKDSFFELTLKSK--LKEWLLERVVE--GSKTTE----YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR------  599 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~--l~~~lv~~Ll~--Gadin~----~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~------  599 (805)
                      ..|.|.||.|+.+..  ..+ ++..|++  ..-+|.    -...|+||||+|..+.+.++|++|++.||||+++      
T Consensus       141 a~GET~Lh~~lL~~~~~~n~-la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNE-LARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             chhhhHHHHHHhcCchhHHH-HHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            458899999998543  223 5666665  322332    2347999999999999999999999999999985      


Q ss_pred             ---c--------------CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 003660          600 ---D--------------KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS  662 (805)
Q Consensus       600 ---D--------------~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLl  662 (805)
                         |              ..|..||.+||..++.+|+++|+++|||+++      +|..|+|.||+.+..-..++-.+++
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a------qDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA------QDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc------cccCCChHHHHHHHHHHHHHHHHHH
Confidence               1              1478999999999999999999999999999      9999999999999998899999999


Q ss_pred             Hcccc
Q 003660          663 EQALV  667 (805)
Q Consensus       663 e~Ga~  667 (805)
                      ++|++
T Consensus       294 ~~ga~  298 (782)
T KOG3676|consen  294 ELGAN  298 (782)
T ss_pred             hcCCC
Confidence            99988

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.14  E-value=7.7e-11  Score=94.92  Aligned_cols=54  Identities=39%  Similarity=0.510  Sum_probs=46.4

Q ss_pred             CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 003660          603 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLS  662 (805)
Q Consensus       603 G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLl  662 (805)
                      |+||||+||..|+.+++++|++.|++++.      +|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999999998      7899999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.14  E-value=5.4e-10  Score=113.09  Aligned_cols=106  Identities=26%  Similarity=0.269  Sum_probs=96.4

Q ss_pred             CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCC-----HHHHHHHHHcCC---CCCC
Q 003660          560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGR-----EKMVVDLLSAGA---KPNL  631 (805)
Q Consensus       560 Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~-----~~iV~~LL~~GA---d~n~  631 (805)
                      ....+..+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..|+     .+++++|++.|+   +.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            33445577789999999999999999999999999999999999999999999999     999999999999   4444


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcc
Q 003660          632 VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       632 ~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~  671 (805)
                            +|..|.||||+|+..|+.+++++|++.|++....
T Consensus       143 ------~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~  176 (235)
T COG0666         143 ------RDEDGNTPLHWAALNGDADIVELLLEAGADPNSR  176 (235)
T ss_pred             ------cCCCCCchhHHHHHcCchHHHHHHHhcCCCCccc
Confidence                  7899999999999999999999999999877665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=2.8e-10  Score=125.68  Aligned_cols=90  Identities=20%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHc
Q 003660          573 VIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK  652 (805)
Q Consensus       573 ~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~  652 (805)
                      .|.-|+..|..++|+-.+..--|+...+..|.||||-|+..||.+||++||+.|+++|+      .|.+|+||||+|+.+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa------~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA------ADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC------ccCCCCchhhhhhhc
Confidence            34558889999999999988889999999999999999999999999999999999999      899999999999999


Q ss_pred             CCHHHHHHHHHccccc
Q 003660          653 GFDGLAAFLSEQALVA  668 (805)
Q Consensus       653 g~~~iv~lLle~Ga~~  668 (805)
                      ++..+++.|+++|+..
T Consensus       627 Nnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAV  642 (752)
T ss_pred             CchHHHHHHHhccceE
Confidence            9999999999999654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.04  E-value=3.8e-10  Score=132.55  Aligned_cols=249  Identities=17%  Similarity=0.178  Sum_probs=161.4

Q ss_pred             CCcEEEEcCCeecceeeccccceeeeCCCC--CCCeeEEEEEeCCCCccccccccccCCC-CcccCCCCccccchhhHHH
Q 003660          398 KSNMFCVCGEVRVPAEFVQAGVYRCFLPPH--SPGLFLLYMSLDGHKPISQVLNFEYRSP-QLHAPVASSEDKSKWEEFQ  474 (805)
Q Consensus       398 ~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph--~~G~V~l~v~~~n~~~~se~~~Feyr~~-~~~~~~~~~~~~~~~~el~  474 (805)
                      .....|--|+.+..--+|..|.-    =.|  ..|.||+-++...++  +.+++.--+.. .+....+.+.|    +.+.
T Consensus       760 ~LT~acaggh~e~vellv~rgan----iehrdkkgf~plImaatagh--~tvV~~llk~ha~veaQsdrtkd----t~lS  829 (2131)
T KOG4369|consen  760 NLTSACAGGHREEVELLVVRGAN----IEHRDKKGFVPLIMAATAGH--ITVVQDLLKAHADVEAQSDRTKD----TMLS  829 (2131)
T ss_pred             cccccccCccHHHHHHHHHhccc----ccccccccchhhhhhcccCc--hHHHHHHHhhhhhhhhhcccccC----ceEE
Confidence            45577888888766666666642    134  789999999886665  22222222110 01110000000    1111


Q ss_pred             H-----HHHHHHHHhccccccccccCCCCCCchHHHhhhhhhhhcccCCHHHHHHHhCCCC--CC----cccccchHHHH
Q 003660          475 V-----QMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKR--TS----LPEAKDSFFEL  543 (805)
Q Consensus       475 l-----~~Rl~~ll~~~~~~lqil~~k~~~~~l~d~~~~a~~i~~~~~~~~~li~~l~~~~--~~----~~~~~t~L~~A  543 (805)
                      +     -.|.+++|..-.      -.|.    ..+..+...+-.+..++...+++.+...+  +.    ..-+-.||+.|
T Consensus       830 lacsggr~~vvelLl~~g------anke----hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAG------ANKE----HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             EecCCCcchHHHHHHHhh------cccc----ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhh
Confidence            1     135555552211      0111    12233344445555688899999875554  22    33466899999


Q ss_pred             HHcCCcHHHHHHHHHc-CCCCCc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHH
Q 003660          544 TLKSKLKEWLLERVVE-GSKTTE-YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVD  621 (805)
Q Consensus       544 a~~~~l~~~lv~~Ll~-Gadin~-~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~  621 (805)
                      .+.|+-..  ...|++ |.|+|. ...+-+|+|-+|+..|+.++|.+||.+.+++..+-..|.|||+-+|..|..++-++
T Consensus       900 tmngh~~a--t~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~  977 (2131)
T KOG4369|consen  900 TMNGHQAA--TLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNL  977 (2131)
T ss_pred             hhccccHH--HHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchh
Confidence            99999873  455566 999998 45567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCC-----------------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHccccc
Q 003660          622 LLSAGAKPNLVT-----------------------------DPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       622 LL~~GAd~n~~t-----------------------------d~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~  668 (805)
                      ||..|||+|+..                             ....+|..|+|+|-+|+..|+...+.+|++++++.
T Consensus       978 li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen  978 LIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADA 1053 (2131)
T ss_pred             hhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccCh
Confidence            999999999852                             11224455556665555555555555555555544

>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold

Probab=99.01  E-value=7.6e-10  Score=96.78  Aligned_cols=83  Identities=23%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeeccee-eccccceeeeCCCCCCCeeEEEEEeCCCCcc
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAE-FVQAGVYRCFLPPHSPGLFLLYMSLDGHKPI  444 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~-~~~~gvLrC~~Pph~~G~V~l~v~~~n~~~~  444 (805)
                      .|++|+|.|++..||++|+|.|.+|..    ....+.|+||+...+.. .+++..|+|.+|++.+|.+++.|..++...+
T Consensus         2 ~I~si~P~~~~~~gg~~ItI~G~~f~~----~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~~~~~~v~v~~~~~~~~   77 (85)
T PF01833_consen    2 VITSISPNSGSISGGTNITITGSNFGS----NSSNISVKIGGSQCTVITVVSSTQITCTSPALPSGNVNVSVTVNGQQIY   77 (85)
T ss_dssp             EEEEEESSEEETTCTSEEEEEEESSES----SSTTEEEEETTEEEEEEGEEETTEEEEE--SCSSEEEEEEEEETTSEEE
T ss_pred             EEEEEECCeEecCCCEEEEEEEEeecc----cCCceEEEECCEeeeEEEEECCcEEEEEECCCCCccEEEEEEECCcCeE
Confidence            699999999999999999999998822    36679999999999999 9999999999999999999999999986778


Q ss_pred             cccccccc
Q 003660          445 SQVLNFEY  452 (805)
Q Consensus       445 se~~~Fey  452 (805)
                      ++...|+|
T Consensus        78 ~~~~~F~Y   85 (85)
T PF01833_consen   78 SNNTSFTY   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             ECCeeeEC
Confidence            88888887

These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.99  E-value=1.2e-09  Score=130.14  Aligned_cols=257  Identities=17%  Similarity=0.152  Sum_probs=146.5

Q ss_pred             ccchHHHHHHcCCcHHHHHHHH-HcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCc------ccCCCCchhh
Q 003660          536 AKDSFFELTLKSKLKEWLLERV-VEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDF------RDKYGWTALH  608 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~L-l~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~------~D~~G~TpLh  608 (805)
                      +..-+|. |..+++. |.+.++ ..|..++.+|..||||||||+..|+..++..|+..|++.++      .+..|.|+--
T Consensus       608 ~qgV~hf-ca~lg~e-wA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~  685 (975)
T KOG0520|consen  608 GQGVIHF-CAALGYE-WAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD  685 (975)
T ss_pred             CCChhhH-hhhcCCc-eeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh
Confidence            4455666 5555544 333332 33899999999999999999999999999999988865543      3457999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCccccccccccccccccc
Q 003660          609 WAAYYGREKMVVDLLSAGAKPNL--VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTG  686 (805)
Q Consensus       609 ~Aa~~G~~~iV~~LL~~GAd~n~--~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~~~i~~~~~~~  686 (805)
                      .|...|+..+..+|-+.......  .+... .+..+.+|..-|....        .+......-....|.+++.+...+.
T Consensus       686 la~s~g~~gia~~lse~~L~~~~~~~~~~~-~~~s~~~~~~~~~~t~--------~e~s~~~~~~~~sl~Dtl~avrdAa  756 (975)
T KOG0520|consen  686 LARANGHKGIAGYLSEKALSAHLSNLELAD-PNLSADSEEDKAEKTS--------SEGSPNPDEDSDSLKDTLAAVRDAA  756 (975)
T ss_pred             hhhcccccchHHHHhhhHHHHHHhhccccc-cccCCCchhhhhhhcc--------CCCCCCCCccccccccccccccchH
Confidence            99999999999988765211110  00000 1223455555444331        1111010000001222111111111


Q ss_pred             cchhhcccCCc----------------c------hhhhhhhh----HHHHHhHHHHHHHHHHHHhhhhHHHHHHH-----
Q 003660          687 STITVDTQNLT----------------E------DEVYLKDT----LSAYRTAAEAAARIQAAFREHSLKVQTKA-----  735 (805)
Q Consensus       687 ~~~~~~~~~~~----------------~------~~~slkd~----LaA~r~Aa~aA~~iQ~afR~~s~r~R~q~-----  735 (805)
                      ..+......+.                .      ...+++..    +-..|.-..||.+||.-||.|..++-+.-     
T Consensus       757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~  836 (975)
T KOG0520|consen  757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQPI  836 (975)
T ss_pred             HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcccCCcc
Confidence            11100000000                0      00000000    00112234577888888888776542221     


Q ss_pred             --hhcCC--------------cHHHH-HHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHhhhHHHH--HHHHHHHHH
Q 003660          736 --IRFSS--------------PEEEA-QNIIAALKIQHAFRNFEVRKK----MAAAARIQHRFRSWKVR--KEFLNMRRQ  792 (805)
Q Consensus       736 --~~~~~--------------~~~~a-~~l~Aa~~iq~~~r~~~~~~~----~~AAv~IQ~~~Rg~~~R--k~f~~~r~~  792 (805)
                        ++...              +.... ..+.++.+++.+||+|+.+.+    ..||+.||..||-+|.-  .-|.+|-++
T Consensus       837 v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A  916 (975)
T KOG0520|consen  837 VKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLTRA  916 (975)
T ss_pred             ccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111              22222 345688899999999977764    35889999999999987  777888899


Q ss_pred             HHHHHHhhhhc
Q 003660          793 AIKIQVILLCI  803 (805)
Q Consensus       793 ~v~IQ~~~Rg~  803 (805)
                      +++||+.+|-+
T Consensus       917 ~~~VQsm~rs~  927 (975)
T KOG0520|consen  917 VVRVQSMFRSP  927 (975)
T ss_pred             HHHHHHHhcCH
Confidence            99999998854

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.98  E-value=3.3e-10  Score=133.07  Aligned_cols=123  Identities=20%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-cCCCCchhhHHHh
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR-DKYGWTALHWAAY  612 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~-D~~G~TpLh~Aa~  612 (805)
                      +-.|+|..||..|+-+  ++++|+. |+++..+|+.|.+||.+|+-.||..+|+.|+++-++++.+ |+.+.|+|.+||.
T Consensus       756 n~~t~LT~acaggh~e--~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHRE--EVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHH--HHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            3456677777766655  4666555 7777777777777777777777777777777666666653 4556666666666


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       613 ~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      .|+.++|++||.+||+-..      ++-...|||.+|...|+.+|+.+|+.+|
T Consensus       834 ggr~~vvelLl~~gankeh------rnvsDytPlsla~Sggy~~iI~~llS~G  880 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEH------RNVSDYTPLSLARSGGYTKIIHALLSSG  880 (2131)
T ss_pred             CCcchHHHHHHHhhccccc------cchhhcCchhhhcCcchHHHHHHHhhcc
Confidence            6666666666666666544      4455555555555555555555555555

>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=98.97  E-value=2.5e-09  Score=94.70  Aligned_cols=82  Identities=27%  Similarity=0.387  Sum_probs=69.8

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCC-CCCeeEEEEEeCCCCcc
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPH-SPGLFLLYMSLDGHKPI  444 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph-~~G~V~l~v~~~n~~~~  444 (805)
                      .|++|+|..|+..|||+|+|.|.+|..     .....|+||+.+....-+.+..|.|.+|++ ..|.++|.|.-++.. .
T Consensus         2 ~I~~i~P~~Gp~~GGT~vtI~G~~~~~-----~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~-~   75 (85)
T cd01179           2 SITSLSPSYGPQSGGTRLTITGKHLNA-----GSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGAR-R   75 (85)
T ss_pred             eeeEEcCCCCCCCCCEEEEEEEECCCC-----CCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCcc-c
Confidence            699999999999999999999999865     344899999998777767899999999998 678999999988763 4


Q ss_pred             ccccccccC
Q 003660          445 SQVLNFEYR  453 (805)
Q Consensus       445 se~~~Feyr  453 (805)
                      +....|+|.
T Consensus        76 ~~~~~F~Y~   84 (85)
T cd01179          76 LAPLVFTYT   84 (85)
T ss_pred             CCCccEEEe
Confidence            445788885

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT)

Probab=98.88  E-value=8e-09  Score=91.36  Aligned_cols=83  Identities=24%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEc-CCeecceeeccccceeeeCCCCCC---CeeEEEEEeCCC
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVC-GEVRVPAEFVQAGVYRCFLPPHSP---GLFLLYMSLDGH  441 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~F-G~v~Vpa~~~~~gvLrC~~Pph~~---G~V~l~v~~~n~  441 (805)
                      .|+.|+|.+|+..||++|+|.|.+|...     ..+.|+| |+.......+.+..|.|.+|++..   |.|.+.+...+.
T Consensus         2 ~I~~i~P~~g~~~GGt~itI~G~~f~~~-----~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~   76 (89)
T cd00102           2 VITSISPSSGPVSGGTEVTITGSNFGSG-----SNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNG   76 (89)
T ss_pred             EEeEEECCcCCCCCCeEEEEEEECCCCC-----CcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCC
Confidence            6999999999999999999999998652     2699999 898877777799999999999843   888888876653


Q ss_pred             CccccccccccC
Q 003660          442 KPISQVLNFEYR  453 (805)
Q Consensus       442 ~~~se~~~Feyr  453 (805)
                      ...+....|+|.
T Consensus        77 ~~~~~~~~F~Y~   88 (89)
T cd00102          77 GITSSPLTFTYV   88 (89)
T ss_pred             cccCCCccEEee
Confidence            356777888885

IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.82  E-value=1.3e-08  Score=111.90  Aligned_cols=97  Identities=27%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             CCccCCCCChH------HHHHHHcCCHHHHHHHHHCCCCCCcccCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 003660          563 TTEYDVHGQGV------IHLCAMLGYTWAILLFSWSGLSLDFRDKY-GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDP  635 (805)
Q Consensus       563 in~~D~~G~T~------LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~-G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~  635 (805)
                      ...+|.+|.|.      ||-.++.|+.++.--||..||++|..+.. |.||||.|+..|...-+++|+-+|||+++    
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a----  195 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA----  195 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC----
Confidence            45577777665      89999999999999999999999998875 99999999999999999999999999999    


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          636 TSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       636 ~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                        .|.+|.||+++|...||.++++-|++.-
T Consensus       196 --~d~~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  196 --QDSSGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             --CCCCCCcHHHHHHhcCchHHHHHHHHHH
Confidence              8999999999999999999998887754

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.79  E-value=1.4e-08  Score=105.59  Aligned_cols=87  Identities=21%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTE-YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~-~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      +.|.++|.+|+.+|++.  ++++|++ |+|+|. .+..+.||||+||..|+.++..+|++.|+.+...+.-|+|+-.+||
T Consensus        43 ~sGMs~LahAaykGnl~--~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA  120 (396)
T KOG1710|consen   43 PSGMSVLAHAAYKGNLT--LVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA  120 (396)
T ss_pred             CCcccHHHHHHhcCcHH--HHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHH
Confidence            45789999999999998  8999999 999998 7788999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHH
Q 003660          612 YYGREKMVVDL  622 (805)
Q Consensus       612 ~~G~~~iV~~L  622 (805)
                      .-|+.+||..+
T Consensus       121 FVG~H~CV~iI  131 (396)
T KOG1710|consen  121 FVGHHECVAII  131 (396)
T ss_pred             HhcchHHHHHH
Confidence            99999999865

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=7.2e-09  Score=119.57  Aligned_cols=83  Identities=25%  Similarity=0.360  Sum_probs=79.0

Q ss_pred             CCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 003660          563 TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY-GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPG  641 (805)
Q Consensus       563 in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~-G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~  641 (805)
                      .|.+|..|+|+||+|+..|...++++||.+|++++.+|.. ||||||-|.++|+.+|+-+||.+|+...+      +|.+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i------~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI------KDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE------eccc
Confidence            6779999999999999999999999999999999999986 99999999999999999999999999988      8999


Q ss_pred             CCcHHHHHHH
Q 003660          642 GLNAADIASK  651 (805)
Q Consensus       642 G~TpL~lA~~  651 (805)
                      |..||+.-++
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            9999997765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.66  E-value=6.4e-08  Score=107.69  Aligned_cols=121  Identities=26%  Similarity=0.275  Sum_probs=108.5

Q ss_pred             chHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCcccCCCCchhhHHHhcCC
Q 003660          538 DSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS--LDFRDKYGWTALHWAAYYGR  615 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gad--vn~~D~~G~TpLh~Aa~~G~  615 (805)
                      ..++.|+..+++.. +.+.-+.|.++-.++.+-.|.||+|+..|+-++|++||.+|..  ++..|..|.|+||-|+..++
T Consensus       868 eeil~av~~~D~~k-lqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMK-LQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHHHhccHHH-HHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            34788999999776 6666666888888999999999999999999999999999854  67788999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          616 EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       616 ~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      ..+..+|++.||....      .|..|.||-.-|...|..+++.||....
T Consensus       947 r~vc~~lvdagasl~k------td~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRK------TDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hHHHHHHHhcchhhee------cccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999999987      7899999999999999999999997654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.60  E-value=4.7e-08  Score=107.39  Aligned_cols=94  Identities=24%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCcH
Q 003660          567 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNA  645 (805)
Q Consensus       567 D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~-~GAd~n~~td~~~~d~~G~Tp  645 (805)
                      +.++.-.+++||..|....++-+.-.|.|++.+|.+.+|+||.||..||.+++++||+ .+.+++.      +|..|+||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~------kDRw~rtP  576 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP------KDRWGRTP  576 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCCh------hhccCCCc
Confidence            3456778999999999999998888899999999999999999999999999999997 5677766      89999999


Q ss_pred             HHHHHHcCCHHHHHHHHHccc
Q 003660          646 ADIASKKGFDGLAAFLSEQAL  666 (805)
Q Consensus       646 L~lA~~~g~~~iv~lLle~Ga  666 (805)
                      |+-|...+|.+++++|-+.--
T Consensus       577 lDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHhc
Confidence            999999999999999987763

>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins

Probab=98.57  E-value=2.9e-07  Score=81.96  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCC-CC--CeeEEEEEeCCC-
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPH-SP--GLFLLYMSLDGH-  441 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph-~~--G~V~l~v~~~n~-  441 (805)
                      .|+.|+|.+|+..|||.|+|.|.+|...    .....|.||+.+....-+.+..|.|.+|+. .+  +.|.+.+...+. 
T Consensus         2 ~I~~i~P~~g~~~Ggt~vtI~G~~f~~~----~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~   77 (90)
T cd00603           2 VITSISPSSGPLSGGTRLTITGSNLGSG----SPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVS   77 (90)
T ss_pred             eEEEEcCCCCCCCCCeEEEEEEECCCCC----CceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCcccc
Confidence            6999999999999999999999988652    247899999998777777899999999998 43  445555543321 


Q ss_pred             CccccccccccC
Q 003660          442 KPISQVLNFEYR  453 (805)
Q Consensus       442 ~~~se~~~Feyr  453 (805)
                      ...+....|+|.
T Consensus        78 ~~~~~~~~F~Y~   89 (90)
T cd00603          78 ARVLSNTTFTYV   89 (90)
T ss_pred             ccccCCcceEEe
Confidence            124555667774

This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.54  E-value=8e-08  Score=105.61  Aligned_cols=94  Identities=17%  Similarity=0.157  Sum_probs=85.3

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCcccCCCCchhhHHHhc
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFS-WSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL-~~Gadvn~~D~~G~TpLh~Aa~~  613 (805)
                      +...++++|+..|++.. +..+++.|.|++.+|.+.+|+||.||..|+.+++++|| ..+++++.+|.+|+|||.-|..+
T Consensus       505 ~~~i~~~~aa~~GD~~a-lrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSA-LRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHH-HHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            45568999999999986 77888889999999999999999999999999999999 57899999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCC
Q 003660          614 GREKMVVDLLSAGAKP  629 (805)
Q Consensus       614 G~~~iV~~LL~~GAd~  629 (805)
                      +|.+++++|-++-...
T Consensus       584 ~h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQYPY  599 (622)
T ss_pred             CcHHHHHHHHHHhccc
Confidence            9999999998765433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.48  E-value=2.7e-07  Score=103.56  Aligned_cols=93  Identities=25%  Similarity=0.349  Sum_probs=68.7

Q ss_pred             chHHHHHHcCCcHHHHHHHHHcCC--CCCc--cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhc
Q 003660          538 DSFFELTLKSKLKEWLLERVVEGS--KTTE--YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~Ga--din~--~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~  613 (805)
                      ..|+.|....++.. ++-+|..|.  .+|.  -+.+|+|+||+||..|+..+.++|+++|+|+-.+|..|+|||.||-..
T Consensus       626 qqLl~A~~~~Dl~t-~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQT-AILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence            45677777777663 333333343  3333  456678888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCC
Q 003660          614 GREKMVVDLLSAGAKPNL  631 (805)
Q Consensus       614 G~~~iV~~LL~~GAd~n~  631 (805)
                      |..+|+.+||.+|+....
T Consensus       705 ~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             ccHHHHHHHHHcCCCccc
Confidence            888888888888876543

>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=98.46  E-value=7.2e-07  Score=80.54  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=64.8

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecce---eeccccceeeeCCCCC-C-CeeEEEEEeCC
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPA---EFVQAGVYRCFLPPHS-P-GLFLLYMSLDG  440 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa---~~~~~gvLrC~~Pph~-~-G~V~l~v~~~n  440 (805)
                      .|++|+|..|+..|||+|+|.|.+|.....  .....+++|+.+-.-   .......|+|.+||+. + +..++.|.-++
T Consensus         2 ~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~--~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~   79 (94)
T cd01180           2 VITEFFPLSGPLEGGTRLTICGSNLGLRKN--DVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGH   79 (94)
T ss_pred             eeEEEeCCCCCCCCCEEEEEEEEcCCCCcc--cceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECC
Confidence            599999999999999999999999876321  245789999985222   2566778999999984 3 67777777766


Q ss_pred             CC-ccccccccccC
Q 003660          441 HK-PISQVLNFEYR  453 (805)
Q Consensus       441 ~~-~~se~~~Feyr  453 (805)
                      .. .++....|.|.
T Consensus        80 ~~~~~~~~~~F~Y~   93 (94)
T cd01180          80 GSFRTESSEGFSFV   93 (94)
T ss_pred             ceecccccCceEEe
Confidence            53 35556778775

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=1.7e-07  Score=66.30  Aligned_cols=29  Identities=45%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 003660          602 YGWTALHWAAYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       602 ~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n  630 (805)
                      +|+||||+||..|+.++|++||++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.44  E-value=4.1e-07  Score=100.45  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=76.7

Q ss_pred             ccchHHHHHHcCCcHHHHHHHHHcCCCCCccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcC
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVEGSKTTEYD-VHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG  614 (805)
Q Consensus       536 ~~t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D-~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G  614 (805)
                      -.-.||-.+..++++. .+.+|..|+++|..+ ..|.||||.||..|..--+++|+-+|||+++.|.+|.||+.+|-..|
T Consensus       133 LsrQLhasvRt~nlet-~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  133 LSKQLHSSVRTGNLET-CLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHHHHhhcccHHH-HHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence            3457888888888875 566666699999955 57999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHH
Q 003660          615 REKMVVDLLS  624 (805)
Q Consensus       615 ~~~iV~~LL~  624 (805)
                      |.++++-|++
T Consensus       212 H~~laeRl~e  221 (669)
T KOG0818|consen  212 HHELAERLVE  221 (669)
T ss_pred             chHHHHHHHH
Confidence            9988887765

>smart00429 IPT ig-like, plexins, transcription factors

Probab=98.43  E-value=6.4e-07  Score=79.72  Aligned_cols=83  Identities=25%  Similarity=0.296  Sum_probs=62.9

Q ss_pred             eeeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeec--cccceeeeCCCC--CCCeeEE-EEEeC
Q 003660          365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFV--QAGVYRCFLPPH--SPGLFLL-YMSLD  439 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~--~~gvLrC~~Pph--~~G~V~l-~v~~~  439 (805)
                      ..|+.|+|.+|+..||++|+|+|.+|..     .....|.|+...++..++  .+..|+|.+|+.  .++.+++ .+...
T Consensus         2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-----~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~   76 (90)
T smart00429        2 PVITRISPTSGPVSGGTEITLCGKNLDS-----ISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLR   76 (90)
T ss_pred             CEEEEEccCcCcCCCCeEEEEeeecCCc-----ceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEe
Confidence            4699999999999999999999999876     455778887756666664  578999999987  4677777 66665


Q ss_pred             CCCcccccccccc
Q 003660          440 GHKPISQVLNFEY  452 (805)
Q Consensus       440 n~~~~se~~~Fey  452 (805)
                      +...-++...|+|
T Consensus        77 ~~~~~~~~~~f~y   89 (90)
T smart00429       77 NGGVPSSPQPFTY   89 (90)
T ss_pred             CCCccCcccCeEE
Confidence            5543343345665

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.33  E-value=9.5e-07  Score=99.01  Aligned_cols=87  Identities=20%  Similarity=0.314  Sum_probs=73.5

Q ss_pred             chHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCH
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~  616 (805)
                      -++|.++...+....-.+++.+ +..++..|..|.||||+|+..|+...++.|+.+|+++-.+++.||+|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3578888777766522223333 668888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 003660          617 KMVVDLLS  624 (805)
Q Consensus       617 ~iV~~LL~  624 (805)
                      .++..+|.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            88877664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.29  E-value=1.6e-06  Score=97.59  Aligned_cols=91  Identities=19%  Similarity=0.111  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CC--cccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 003660          574 IHLCAMLGYTWAILLFSWSGLS--LD--FRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA  649 (805)
Q Consensus       574 LH~Aa~~G~~~~v~~LL~~Gad--vn--~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA  649 (805)
                      |..|........+-+||.+|..  +|  ..+.+|+||||+||..|+..+.++|+=+|+|+.+      +|..|+|||.||
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~------rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA------RDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee------cccCCchhhhhH
Confidence            4445565667777888888843  33  3466789999999999999999999999999998      899999999999


Q ss_pred             HHcCCHHHHHHHHHcccccCc
Q 003660          650 SKKGFDGLAAFLSEQALVAQF  670 (805)
Q Consensus       650 ~~~g~~~iv~lLle~Ga~~~~  670 (805)
                      ...|..+|+.+|+.+|+.+..
T Consensus       702 r~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hhcccHHHHHHHHHcCCCccc
Confidence            999999999999999976654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.27  E-value=9.6e-07  Score=63.69  Aligned_cols=30  Identities=43%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             CCCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 003660          602 YGWTALHWAAYYGREKMVVDLLSAGAKPNL  631 (805)
Q Consensus       602 ~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~  631 (805)
                      +|+||||+|+..|+.+++++|+++|++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            356666666666666666666666666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=1e-06  Score=62.27  Aligned_cols=30  Identities=20%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCc
Q 003660          569 HGQGVIHLCAMLGYTWAILLFSWSGLSLDF  598 (805)
Q Consensus       569 ~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~  598 (805)
                      +|+||||+||..|+.++|++||++|+|||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.26  E-value=1.2e-06  Score=63.16  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Q 003660          569 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK  601 (805)
Q Consensus       569 ~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~  601 (805)
                      +|+||||+||..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.19  E-value=3.1e-06  Score=94.96  Aligned_cols=87  Identities=24%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             hHHHHHHHcCCHHHHHH-HH-HCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHH
Q 003660          572 GVIHLCAMLGYTWAILL-FS-WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA  649 (805)
Q Consensus       572 T~LH~Aa~~G~~~~v~~-LL-~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA  649 (805)
                      -|||+++.....+-+.. |. +.+..|+.+|..|.||||+|+..||...++.|+.+||++.+      +|..|++|||-|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~------kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI------KNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc------cccccccHHHHH
Confidence            45999998876655443 33 55678999999999999999999999999999999999998      999999999999


Q ss_pred             HHcCCHHHHHHHHHc
Q 003660          650 SKKGFDGLAAFLSEQ  664 (805)
Q Consensus       650 ~~~g~~~iv~lLle~  664 (805)
                      +..|+..++.-++.+
T Consensus        96 v~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRH  110 (560)
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999877666543

>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR)

Probab=98.10  E-value=8.5e-06  Score=74.29  Aligned_cols=59  Identities=24%  Similarity=0.409  Sum_probs=49.9

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCee-cceeeccccceeeeCCCC
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVR-VPAEFVQAGVYRCFLPPH  427 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~-Vpa~~~~~gvLrC~~Pph  427 (805)
                      +|++|+|.||+..|||.|+|+|.+|...   ....+.++||+.. ++-.+.++..++|.+|+.
T Consensus         2 ~I~~i~P~~g~~SGGt~itV~G~~Lds~---q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~   61 (99)
T cd01181           2 TITRIEPEWSFLSGGTPITVTGTNLNTV---QEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSL   61 (99)
T ss_pred             EEEEeccCCCccCCCEEEEEEeeccCcc---cccEEEEEECCceeccceeCCCCEEEeCCCCC
Confidence            6999999999999999999999999764   3457899999953 455567888999999976

Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.09  E-value=3.7e-06  Score=101.60  Aligned_cols=100  Identities=26%  Similarity=0.299  Sum_probs=88.4

Q ss_pred             cCCCCCc--cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 003660          559 EGSKTTE--YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPT  636 (805)
Q Consensus       559 ~Gadin~--~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~  636 (805)
                      .++++|.  .-..|.|+||.|+..|..-++++|+..|+++|..|..|+||||.+...|+...+..|++.||++++     
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-----  717 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-----  717 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc-----
Confidence            3555654  335689999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003660          637 SQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       637 ~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                       .+.+|.+||++|....+.+++-+|.-.
T Consensus       718 -~~~~~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  718 -FDPDGKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             -cCccCcchhhHHhhhccccHHHHHhhh
Confidence             789999999999877777777666443

>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain

Probab=98.07  E-value=1.8e-05  Score=69.49  Aligned_cols=79  Identities=14%  Similarity=0.058  Sum_probs=66.4

Q ss_pred             eeeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCCCCCeeEEEEEeCCCCcc
Q 003660          365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPI  444 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph~~G~V~l~v~~~n~~~~  444 (805)
                      ..|..++|.-|..  |++|+|.|+.|.+      ..-.++||+.+++...|++..|.|.+|.+.+|...+.|...++. -
T Consensus         3 P~I~~i~P~~g~~--G~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~vP~~~aG~~~V~V~~~~G~-~   73 (81)
T cd02849           3 PLIGHVGPMMGKA--GNTVTISGEGFGS------APGTVYFGTTAATVISWSDTRIVVTVPNVPAGNYDVTVKTADGA-T   73 (81)
T ss_pred             CEEeeEcCCCCCC--CCEEEEEEECCCC------CCcEEEECCEEeEEEEECCCEEEEEeCCCCCceEEEEEEeCCCc-c
Confidence            4699999999987  8899999998864      12578999999998899999999999999999999999987553 4


Q ss_pred             cccccccc
Q 003660          445 SQVLNFEY  452 (805)
Q Consensus       445 se~~~Fey  452 (805)
                      |+...|+|
T Consensus        74 Sn~~~f~~   81 (81)
T cd02849          74 SNGYNFEV   81 (81)
T ss_pred             cCcEeeEC
Confidence            66555654

Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.03  E-value=7.6e-06  Score=81.15  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCC
Q 003660          560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSG-LSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA  627 (805)
Q Consensus       560 Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~G-advn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA  627 (805)
                      +.++|.+|..|||+|+.||..|..+++.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            3567777777888888887777777778777777 7777777777788888777777777777777633

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.83  E-value=8.3e-06  Score=95.03  Aligned_cols=73  Identities=26%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             CCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccccCccccc
Q 003660          596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN-PGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       596 vn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d-~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~  674 (805)
                      .|..|..|+|+||+|+..|..++++.||++|++++.      +| ..|.||||-|...|+.+|+-+|+.+|+...+.+-.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v------qD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV------QDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeee------ccccccchHhhHhhhhchHHHHHHHHhcCCceEEeccc
Confidence            688999999999999999999999999999999998      66 57999999999999999999999999766665543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.82  E-value=5.5e-05  Score=89.55  Aligned_cols=127  Identities=13%  Similarity=0.007  Sum_probs=101.7

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc---C--CCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhH
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE---G--SKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW  609 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~---G--adin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~  609 (805)
                      .+....+.|+..|+..  .+++.++   .  -++|+.|.-|+++||+|..+.+.+++++|++.+..+       .-+|.+
T Consensus        24 ~~e~~fL~a~E~gd~~--~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~   94 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVP--LVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLL   94 (822)
T ss_pred             hhhHHHHHHHHcCChH--HHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHH
Confidence            4556788899999987  4555544   2  467889999999999999999999999999987665       248999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCC----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCc
Q 003660          610 AAYYGREKMVVDLLSAGAKPN----LVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  670 (805)
Q Consensus       610 Aa~~G~~~iV~~LL~~GAd~n----~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~  670 (805)
                      |+..|..++|++|+.+-....    ..+++.+.-..+.||+.+||..++.+|+++|+.+|++...
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999999998643331    1123334556789999999999999999999999977644

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.76  E-value=4.9e-05  Score=82.16  Aligned_cols=58  Identities=21%  Similarity=0.228  Sum_probs=33.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 003660          573 VIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       573 ~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n  630 (805)
                      -|..||+.|..+.|+.|++.|++||.+|.+...||.+|+.+||+.+|++||++||-..
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            4555555555555555555555555555555555555555555555555555555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.72  E-value=5.7e-05  Score=75.11  Aligned_cols=67  Identities=34%  Similarity=0.471  Sum_probs=63.1

Q ss_pred             CCCCCcccCCCCchhhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 003660          593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG-AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       593 Gadvn~~D~~G~TpLh~Aa~~G~~~iV~~LL~~G-Ad~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~G  665 (805)
                      +.+||.+|..|||||++|+..|..+.|.+|+.+| +.+.+      .|..|.+++.+|-..|+.+++..|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv------~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV------TDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc------cccccchHHHHHHhcChHHHHHHHHHHh
Confidence            5789999999999999999999999999999999 88887      8899999999999999999999998874

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.67  E-value=0.00018  Score=86.91  Aligned_cols=79  Identities=27%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003660          715 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRK---KMAAAARIQHRFRSWKVRKEFLNMRR  791 (805)
Q Consensus       715 ~aA~~iQ~afR~~s~r~R~q~~~~~~~~~~a~~l~Aa~~iq~~~r~~~~~~---~~~AAv~IQ~~~Rg~~~Rk~f~~~r~  791 (805)
                      .++..||..+|.+..|+++...+           .++..+|...|++..|.   +..||+.||+.+|+|..||+|+.++.
T Consensus       674 ~~~~~iq~~~r~~~~r~~f~~~r-----------~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~~  742 (862)
T KOG0160|consen  674 AAKVLIQRQIRGYLARKKFLQLR-----------SAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALIP  742 (862)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            35666999999999998877666           44555666666665555   78999999999999999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 003660          792 QAIKIQVILLCIV  804 (805)
Q Consensus       792 ~~v~IQ~~~Rg~~  804 (805)
                      +++.||+.+||+.
T Consensus       743 ~~~~~qs~~r~~~  755 (862)
T KOG0160|consen  743 ASITIQSGVRAML  755 (862)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985

>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes

Probab=97.60  E-value=0.00027  Score=61.99  Aligned_cols=79  Identities=15%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCCCCCeeEEEEEeCCCCccc
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPIS  445 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph~~G~V~l~v~~~n~~~~s  445 (805)
                      .|..++|.-|.  -|++|+|.|+.|.+      ..-.++||+.+++...|++..|.|.+|.+.+|...+.|...++. -|
T Consensus         2 ~I~~i~P~~g~--pG~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~VP~~~~g~~~i~V~~~~G~-~S   72 (81)
T cd00604           2 LIGSVGPVMGK--PGNTVTISGEGFGS------TGGTVYFGGTAAEVLSWSDTSIVVEVPRVAPGNYNISVTTVDGV-TS   72 (81)
T ss_pred             eEeeEcCCCCC--CCCEEEEEEECCCC------CccEEEECCEEEEEEEECCCEEEEEeCCCCCCceEEEEEECCCc-cc
Confidence            58889998776  68899999998854      12468999999988899999999999999999999999976553 57


Q ss_pred             cccccccC
Q 003660          446 QVLNFEYR  453 (805)
Q Consensus       446 e~~~Feyr  453 (805)
                      +...|+|.
T Consensus        73 n~~~f~~l   80 (81)
T cd00604          73 NGYNFEVL   80 (81)
T ss_pred             CcEeEEEc
Confidence            77778874

These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.37  E-value=0.00025  Score=76.91  Aligned_cols=67  Identities=18%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             chhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcccccCcccccccc
Q 003660          605 TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAG  677 (805)
Q Consensus       605 TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~~~g~~~iv~lLle~Ga~~~~~~~~l~~  677 (805)
                      --|..||..|..+.|+.|++.|.++|.      .|.....||.+|+-.||..+|++|+++||.........+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~------vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R  104 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNA------VDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR  104 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcch------hhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch
Confidence            357899999999999999999999999      8899999999999999999999999999876655554433

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.31  E-value=0.00028  Score=45.63  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q 003660          767 MAAAARIQHRFRSWKVRKEFL  787 (805)
Q Consensus       767 ~~AAv~IQ~~~Rg~~~Rk~f~  787 (805)
                      ++||+.||+.+|||+.|++|.
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999984

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.21  E-value=0.00026  Score=86.01  Aligned_cols=90  Identities=18%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHHh
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa~  612 (805)
                      ..+.+.||.|+..+...  ++++|++ |+++|.+|..|.||||.+...|+...+..|+++|++.++.|..|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~--~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSG--AVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHH--HHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            45678999999999877  7888888 99999999999999999999999999999999999999999999999999988


Q ss_pred             cCCHHHHHHHHHc
Q 003660          613 YGREKMVVDLLSA  625 (805)
Q Consensus       613 ~G~~~iV~~LL~~  625 (805)
                      ..+.+++-+|...
T Consensus       732 ~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  732 AANADIVLLLRLA  744 (785)
T ss_pred             hccccHHHHHhhh
Confidence            8777777665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.17  E-value=0.00047  Score=77.69  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=79.6

Q ss_pred             ccccchHHHHHHcCCcHHHHHHHHHc-CC--CCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHH
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GS--KTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~Aa~~~~l~~~lv~~Ll~-Ga--din~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~A  610 (805)
                      .+..+-||+|+..|+.+  +++++++ |.  -++..|+.|.|+||-||..++..++.+|++.|+.+...|..|.||-.-|
T Consensus       897 ~~~~sllh~a~~tg~~e--ivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGE--IVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             cchhhHHHHHHhcCChH--HHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHH
Confidence            45567899999999987  8888888 43  3566889999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHH
Q 003660          611 AYYGREKMVVDLLS  624 (805)
Q Consensus       611 a~~G~~~iV~~LL~  624 (805)
                      -..|..+++.+|-.
T Consensus       975 qqa~d~dlaayle~  988 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLES  988 (1004)
T ss_pred             HhcCCchHHHHHhh
Confidence            99999999999865

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.76  E-value=0.018  Score=64.87  Aligned_cols=62  Identities=27%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             HHHHHHHHHCCCCCCcc------cCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCcHHHHHH
Q 003660          583 TWAILLFSWSGLSLDFR------DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS  650 (805)
Q Consensus       583 ~~~v~~LL~~Gadvn~~------D~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~~td~~~~d~~G~TpL~lA~  650 (805)
                      ...|++|.+++++.|..      |..--|+||+|+..|..++|.+||+.|+|+..      +|..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~------kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST------KDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh------cccCCCCcccccc
Confidence            56778888888877653      34467999999999999999999999988777      9999999999987

>PTZ00014 myosin-A; Provisional

Probab=96.61  E-value=0.0031  Score=77.45  Aligned_cols=38  Identities=11%  Similarity=0.076  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003660          767 MAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIV  804 (805)
Q Consensus       767 ~~AAv~IQ~~~Rg~~~Rk~f~~~r~~~v~IQ~~~Rg~~  804 (805)
                      ...+..||+.+|||+.||+|++++++++.||+++|||+
T Consensus       777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l  814 (821)
T PTZ00014        777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHL  814 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999986

>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]

Probab=96.34  E-value=0.0018  Score=74.81  Aligned_cols=209  Identities=16%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCC-CCCeeEEEEEeCCCCcc
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPH-SPGLFLLYMSLDGHKPI  444 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph-~~G~V~l~v~~~n~~~~  444 (805)
                      .|.|+.|-.+.+.+|++|+..|..+.+               ......+|..+...-|+||. .+|.|.+.++.-...+-
T Consensus       244 vprd~~~~Q~~i~~~~~v~~~g~n~~~---------------~als~~~~~~s~~~~~l~~~d~~~~v~~~i~~~~~~~~  308 (605)
T KOG3836|consen  244 VPRDMRRFQVLINGGVEVTLLGANFKD---------------IALSTQCSEESTMVNYLPPSDNPGSVSVSITDPSETSD  308 (605)
T ss_pred             Cccccccccccccccceecccccchhh---------------hhhcccccccccceeeccccccCCCceeeecccccccc
Confidence            799999999999999999999998754               45567799999999999888 99999999986433322


Q ss_pred             ccccccccCC----CCcccCCCCccccchhhHHHHHHHHHHHHhccccccccccCCCCCCchHHHhhhhhhhhcccCCHH
Q 003660          445 SQVLNFEYRS----PQLHAPVASSEDKSKWEEFQVQMRLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWA  520 (805)
Q Consensus       445 se~~~Feyr~----~~~~~~~~~~~~~~~~~el~l~~Rl~~ll~~~~~~lqil~~k~~~~~l~d~~~~a~~i~~~~~~~~  520 (805)
                      +..-..+-+.    +..+.+.++++.           +++.+.      ++|++.++.+. ++++...+....    +|.
T Consensus       309 ~~~~~~~~~~~~~~~~i~~yvp~t~~-----------q~~~~a------l~ivg~n~~~~-l~~a~~~~~~s~----~~~  366 (605)
T KOG3836|consen  309 SNNSNSSPPTSSSTKAIFTYVPSTDR-----------QLIEYA------LQIVGLNMNGK-LEDARNIANSSL----SPT  366 (605)
T ss_pred             ccccccCCccCCCcccceeeecCCCc-----------eeeeeE------EEEecccccCc-hhhhcCCccccC----CCC
Confidence            2211111111    224445544442           344333      67888888776 444443320000    010


Q ss_pred             HHHHHhCCCCCCcccccchHHHHHHcCCcHHHHHHHHHcCCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccc
Q 003660          521 YLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD  600 (805)
Q Consensus       521 ~li~~l~~~~~~~~~~~t~L~~Aa~~~~l~~~lv~~Ll~Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D  600 (805)
                               ...+......+..++..       +..  ..-..+.. +--...++ |+..+....+-.|++.|+.++..|
T Consensus       367 ---------~~~~~~n~~~~s~~aI~-------~~~--~~~~~s~~-~lSl~~~~-~~~~~~ss~v~~lik~~~~~~~~d  426 (605)
T KOG3836|consen  367 ---------SPMMNNNSEQLSPYAIM-------SQK--PTNNLSTV-NLSLCDVR-AALNNSSSLVFTLIKKGAHPNDDD  426 (605)
T ss_pred             ---------CcceeccccccCcccee-------eec--CCCCCCcc-ceeeehhh-hhhcCCccceeeeecccCccchhc
Confidence                     00000000111000000       000  00001100 00011122 566666667777778888888888


Q ss_pred             CCCCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 003660          601 KYGWTALHWAAYYGREKMVVDLLSAGAKPNL  631 (805)
Q Consensus       601 ~~G~TpLh~Aa~~G~~~iV~~LL~~GAd~n~  631 (805)
                      ..|.||+|+++..|..++.+.++....+.+.
T Consensus       427 ~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~  457 (605)
T KOG3836|consen  427 KFGFTPLHIPQISGDPRIIQLLLNCKVAISL  457 (605)
T ss_pred             ccccccccccCCCCCHHHhhhhhhhhhhhhc
Confidence            8888888888888888888887765555444

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=96.32  E-value=0.0034  Score=42.78  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q 003660          767 MAAAARIQHRFRSWKVRKEFL  787 (805)
Q Consensus       767 ~~AAv~IQ~~~Rg~~~Rk~f~  787 (805)
                      .++|+.||+.+|||+.|++|.
T Consensus         3 ~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        3 TRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            478999999999999999994

Calmodulin-binding motif.

>smart00248 ANK ankyrin repeats

Probab=96.10  E-value=0.0083  Score=39.38  Aligned_cols=27  Identities=44%  Similarity=0.463  Sum_probs=16.3

Q ss_pred             CCchhhHHHhcCCHHHHHHHHHcCCCC
Q 003660          603 GWTALHWAAYYGREKMVVDLLSAGAKP  629 (805)
Q Consensus       603 G~TpLh~Aa~~G~~~iV~~LL~~GAd~  629 (805)
                      |.||||+|+..|+.++++.|+..|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.05  E-value=0.006  Score=74.08  Aligned_cols=40  Identities=33%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003660          765 KKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIV  804 (805)
Q Consensus       765 ~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~~~v~IQ~~~Rg~~  804 (805)
                      .+.++++.||+.+|+|..||.|+++|++++.||+.+||++
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~  710 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVL  710 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3456667777777777777777777777777777777764

>smart00248 ANK ankyrin repeats

Probab=95.38  E-value=0.027  Score=36.82  Aligned_cols=29  Identities=24%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCC
Q 003660          569 HGQGVIHLCAMLGYTWAILLFSWSGLSLD  597 (805)
Q Consensus       569 ~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn  597 (805)
                      .|.|+||+|+..|+.++++.|+..|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999998765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.28  E-value=0.029  Score=67.21  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             cccchHHHHHHcCCcHHHHHHHHHc-CCCCCccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC----------cccCCC
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLD----------FRDKYG  603 (805)
Q Consensus       535 ~~~t~L~~Aa~~~~l~~~lv~~Ll~-Gadin~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn----------~~D~~G  603 (805)
                      -|++.|+.|....+++  ++++|++ +..+       .-+|.+|...|+.++|+.++.+-....          ..-.-+
T Consensus        61 lGr~al~iai~nenle--~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~d  131 (822)
T KOG3609|consen   61 LGRLALHIAIDNENLE--LQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPD  131 (822)
T ss_pred             HhhhceecccccccHH--HHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCC
Confidence            4778888888888887  8888877 4333       457888999999999999997543221          122347


Q ss_pred             CchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 003660          604 WTALHWAAYYGREKMVVDLLSAGAKPNL  631 (805)
Q Consensus       604 ~TpLh~Aa~~G~~~iV~~LL~~GAd~n~  631 (805)
                      .|||.+||..++.+|+++||..|+++-.
T Consensus       132 itPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  132 ITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999866

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=95.23  E-value=0.029  Score=65.60  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003660          763 VRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIV  804 (805)
Q Consensus       763 ~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~~~v~IQ~~~Rg~~  804 (805)
                      ...+-.-++.|||.+|||..|.+|++||++++.|+ .||.|.
T Consensus       692 ~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K  732 (1001)
T KOG0164|consen  692 AERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYK  732 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            33445678999999999999999999999999988 666553

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=94.88  E-value=0.058  Score=63.22  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003660          714 AEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKVRKEFLN  788 (805)
Q Consensus       714 a~aA~~iQ~afR~~s~r~R~q~~~~~~~~~~a~~l~Aa~~iq~~~r~~~~~~~~~AAv~IQ~~~Rg~~~Rk~f~~  788 (805)
                      .+.+..||+++|.+..|.|+++++            |+..|-.+||.   -|.+.++..||+.+|||+.|+.|-+
T Consensus       696 ~~lvtllQK~~RG~~~R~ry~rmk------------a~~~ii~wyR~---~K~ks~v~el~~~~rg~k~~r~ygk  755 (1001)
T KOG0164|consen  696 PSLVTLLQKAWRGWLARQRYRRMK------------ASATIIRWYRR---YKLKSYVQELQRRFRGAKQMRDYGK  755 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhccccCC
Confidence            458899999999999999999765            44444447664   4677889999999999999998743

>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa)

Probab=94.87  E-value=0.097  Score=47.94  Aligned_cols=82  Identities=20%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCC-------eecceeec----cccceeeeCCCC------C
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGE-------VRVPAEFV----QAGVYRCFLPPH------S  428 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~-------v~Vpa~~~----~~gvLrC~~Pph------~  428 (805)
                      .|..+|-.-++..||-+|.++|..+.      +....+.|++       .++-+.+-    +...|+|-+||=      .
T Consensus         2 ~I~r~s~~s~~~~GG~ev~Ll~~k~~------k~dikV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~   75 (101)
T cd00602           2 PICRVSSLSGSVNGGDEVFLLCDKVN------KPDIKVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITR   75 (101)
T ss_pred             ceEEEeCCeeEcCCCcEEEEEecCCC------CCCCEEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccc
Confidence            58889999999999999999998653      2347899998       55555542    666789988875      5


Q ss_pred             CCeeEEEEEeCCCCccccccccccC
Q 003660          429 PGLFLLYMSLDGHKPISQVLNFEYR  453 (805)
Q Consensus       429 ~G~V~l~v~~~n~~~~se~~~Feyr  453 (805)
                      |=.|++++...++...|+...|+|.
T Consensus        76 pV~V~i~L~r~~~~~~S~~~~FtY~  100 (101)
T cd00602          76 PVQVPIQLVRPDDRKRSEPLTFTYT  100 (101)
T ss_pred             cEEEEEEEEeCCCCeecCCcCeEEc
Confidence            5668888887766679999999995

The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.

>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]

Probab=94.85  E-value=0.064  Score=66.55  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             CcceeeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCe-ecceeeccccc-eeeeCCCC-CCCeeEEEEEe
Q 003660          362 EHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEV-RVPAEFVQAGV-YRCFLPPH-SPGLFLLYMSL  438 (805)
Q Consensus       362 ~~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v-~Vpa~~~~~gv-LrC~~Pph-~~G~V~l~v~~  438 (805)
                      =|.+.|..+.|.||+..|||.|+++|+.+..     .++-.|++|.. +-+....+++. ++|..++- .++.-++.|..
T Consensus       140 ~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~-----gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~v~f  214 (1025)
T KOG3610|consen  140 LQGPCFLSAEPVNGPASGGTQVHCTGSPLDT-----GSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVLVSF  214 (1025)
T ss_pred             ecceeEEeeccCcCCCCCCcceEEecccccc-----CCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceEEEe
Confidence            4567899999999999999999999999865     47789999998 77788888887 99999988 44778888888


Q ss_pred             CCCCcccc-ccccccCC
Q 003660          439 DGHKPISQ-VLNFEYRS  454 (805)
Q Consensus       439 ~n~~~~se-~~~Feyr~  454 (805)
                      +... +.. ...|+|..
T Consensus       215 ~~~~-~~~~~~~f~y~~  230 (1025)
T KOG3610|consen  215 DRTP-QKLTPLAFNYTA  230 (1025)
T ss_pred             cccc-cccCCCCccccc
Confidence            7654 444 57888887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.84  E-value=0.04  Score=62.25  Aligned_cols=59  Identities=20%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             HHHHHHc-CCCCCc------cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCchhhHHH
Q 003660          553 LLERVVE-GSKTTE------YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       553 lv~~Ll~-Gadin~------~D~~G~T~LH~Aa~~G~~~~v~~LL~~Gadvn~~D~~G~TpLh~Aa  611 (805)
                      .++.|.+ +.++|.      .+..--|+||+|+..|...+|..||..|+|+...|..|+||..+++
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5566665 555543      4445689999999999999999999999999999999999999887

>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors

Probab=94.42  E-value=0.11  Score=47.31  Aligned_cols=82  Identities=21%  Similarity=0.145  Sum_probs=58.9

Q ss_pred             ceeeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCe--------e----cceeeccccceeeeCCCC----
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEV--------R----VPAEFVQAGVYRCFLPPH----  427 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v--------~----Vpa~~~~~gvLrC~~Pph----  427 (805)
                      +..|.+.|-.-++..||-||.++|..+...       -.|.|-+.        +    +..+.++...|+|.+||=    
T Consensus         1 lp~I~r~s~~s~sv~GG~Ev~Ll~~k~~kD-------ikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~   73 (101)
T cd01178           1 LPEIEKKSLNSCSVNGGEELFLTGKNFLKD-------SKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKH   73 (101)
T ss_pred             CCeeEEeccCceeecCCCEEEEEehhcCCC-------CEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCC
Confidence            357999999999999999999999765331       33444321        1    223445678999999975    


Q ss_pred             --CCCeeEEEEEeCCCCccccccccccC
Q 003660          428 --SPGLFLLYMSLDGHKPISQVLNFEYR  453 (805)
Q Consensus       428 --~~G~V~l~v~~~n~~~~se~~~Feyr  453 (805)
                        .|=.|.|++....+ ..|+...|+|.
T Consensus        74 I~~pV~V~~~l~~~~~-~~S~~~~FtY~  100 (101)
T cd01178          74 VAAPVQVQFYVVNGKR-KRSQPQTFTYT  100 (101)
T ss_pred             cCCceEEEEEEEcCCC-CcCCCCCcEec
Confidence              56667777765434 57999999995

NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=93.58  E-value=0.044  Score=35.37  Aligned_cols=15  Identities=33%  Similarity=0.284  Sum_probs=13.5

Q ss_pred             HHHHHHHHHhhhhcc
Q 003660          790 RRQAIKIQVILLCIV  804 (805)
Q Consensus       790 r~~~v~IQ~~~Rg~~  804 (805)
                      ++++|+||++||||+
T Consensus         1 ~~aai~iQ~~~R~~~   15 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYL   15 (21)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            578999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa)

Probab=93.43  E-value=0.21  Score=44.19  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             eEEEEECCCCCCcccCCCCcEEEEcCCeecceeeccccceeeeCCCC-----------CCCeeEEEEEeCCCCccccccc
Q 003660          381 TKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPH-----------SPGLFLLYMSLDGHKPISQVLN  449 (805)
Q Consensus       381 ~kVlI~G~f~~~~~~~~~~~~~c~FG~v~Vpa~~~~~gvLrC~~Pph-----------~~G~V~l~v~~~n~~~~se~~~  449 (805)
                      .-+-++|.+|       ..++.+-||++++-+.+=.+-.|.|..|+-           +|..||+.+--..+..-+.-..
T Consensus        20 amlEl~GenF-------~pnLkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisLVR~DGvIY~T~lt   92 (97)
T cd01176          20 AMLELHGENF-------TPNLKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISLVRNDGIIYPTGLT   92 (97)
T ss_pred             EEEEEecCcC-------CCCceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEEEecCCeEecCCce
Confidence            4566889988       446999999999998888888999999964           6678999888877765566666


Q ss_pred             cccC
Q 003660          450 FEYR  453 (805)
Q Consensus       450 Feyr  453 (805)
                      |+|.
T Consensus        93 FtYt   96 (97)
T cd01176          93 FTYT   96 (97)
T ss_pred             EEec
Confidence            7774

RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.

>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function

Probab=93.18  E-value=0.18  Score=59.40  Aligned_cols=101  Identities=26%  Similarity=0.411  Sum_probs=67.4

Q ss_pred             CChhHHHHHHhcCcc-------ceeccCCCCCCCCccEEe-ee--hhhhhcccccCccceeccCCCchhhhhhhcccCCE
Q 003660           33 LRPNEIHAILCNSKY-------FSINAKPVNLPKSGTVVL-FD--RKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNE  102 (805)
Q Consensus        33 ~~~~e~~~~l~~~~~-------~~~~~~~~~~p~~g~~~~-~~--r~~~~~~~~dg~~w~~~~~~~~~~e~~~~lk~~~~  102 (805)
                      |..++|+++|..--+       |..+.  -.+|+-||||| |-  -++.-.|-.|||.|.-       -|.--+..|+|.
T Consensus        30 l~~~~~~~~Ll~ap~i~r~~~P~~Wty--lD~P~DGtv~L~wqp~~~lg~~fasDGy~wad-------~E~~y~~~~~G~  100 (669)
T PF08549_consen   30 LPPETVVEYLLKAPQIARDTAPFFWTY--LDKPPDGTVLLTWQPLNRLGTNFASDGYVWAD-------PEQAYTHEVNGY  100 (669)
T ss_pred             CCHHHHHHHHHhchhhhccCCCeEeec--ccCCCCCcEEEEecCchhcCCcCCCCcceecC-------hhheeeecCCCe
Confidence            455666777755433       22222  36789999987 43  2445779999999975       355566667665


Q ss_pred             ee-----EEEEeeecCCCCcceeeEeecccCCC---------CceEEEeccccC
Q 003660          103 ER-----IHVYYAHGEDSPTFVRRCYWLLDKTL---------ENIVLVHYRETH  142 (805)
Q Consensus       103 ~~-----~~~~y~~~~~~~~f~rr~y~~~~~~~---------~~~vlvhy~~~~  142 (805)
                      .+     =++|+-=+|.....-||.|-|+-...         ++.+||||-.-.
T Consensus       101 ~lEi~~~k~G~~p~~e~~a~h~RrRyRL~~~~~p~pn~P~~DpsLwiVHY~~a~  154 (669)
T PF08549_consen  101 TLEIYEHKSGYHPPGEQYASHSRRRYRLVPGKVPNPNAPPPDPSLWIVHYGPAP  154 (669)
T ss_pred             EEEEEEeecCcCCCCCchhheeeeeeEecCCCCCCCCCCCCCCcEEEEEecCCC
Confidence            53     12233336888899999999995433         578999998754

>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors

Probab=92.91  E-value=0.37  Score=43.97  Aligned_cols=82  Identities=11%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             eeEEecCCCccCCCCeEEEEECCCCCCcccCCCCcEEEEcCCe-------e-----cceeeccccceeeeCCCC------
Q 003660          366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEV-------R-----VPAEFVQAGVYRCFLPPH------  427 (805)
Q Consensus       366 ~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~v-------~-----Vpa~~~~~gvLrC~~Pph------  427 (805)
                      .|.++|=.-|++.||.||.+++....      +-...+.|-+.       +     -++.+-....+++-+||=      
T Consensus         2 ~I~r~s~~sgsv~GG~Ev~LLcdKV~------K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~   75 (102)
T cd01177           2 KICRLDKTSGSVKGGDEVYLLCDKVQ------KEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDIT   75 (102)
T ss_pred             EEEEecCcccccCCCcEEEEEecccC------CCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCC
Confidence            69999999999999999999997543      22244544432       1     133445567799999975      


Q ss_pred             CCCeeEEEEEeCCCCccccccccccC
Q 003660          428 SPGLFLLYMSLDGHKPISQVLNFEYR  453 (805)
Q Consensus       428 ~~G~V~l~v~~~n~~~~se~~~Feyr  453 (805)
                      .|=.|-+++.-.....+|+...|+|.
T Consensus        76 ~pV~V~iqL~Rpsd~~~Sep~~F~Y~  101 (102)
T cd01177          76 EPVKVKIQLKRPSDGERSESVPFTYV  101 (102)
T ss_pred             CceEEEEEEEeCCCCCccCCcceEEc
Confidence            45556666666544568999999995

NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=91.50  E-value=0.6  Score=59.41  Aligned_cols=76  Identities=28%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003660          715 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRK---KMAAAARIQHRFRSWKVRKEFLNMRR  791 (805)
Q Consensus       715 ~aA~~iQ~afR~~s~r~R~q~~~~~~~~~~a~~l~Aa~~iq~~~r~~~~~~---~~~AAv~IQ~~~Rg~~~Rk~f~~~r~  791 (805)
                      .+|.+||+++|++..|+|+.+..        ..+.+...++..++-++...   ...+++.||..+|....|++|.....
T Consensus       746 ~~~~~iq~aiR~~~~rrr~~~~~--------k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~  817 (1463)
T COG5022         746 NIATRIQRAIRGRYLRRRYLQAL--------KRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLA  817 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHH
Confidence            58999999999999998887543        33444555555555443322   24889999999999999999999999


Q ss_pred             HHHHHHH
Q 003660          792 QAIKIQV  798 (805)
Q Consensus       792 ~~v~IQ~  798 (805)
                      .|+++|.
T Consensus       818 ~i~~lq~  824 (1463)
T COG5022         818 CIIKLQK  824 (1463)
T ss_pred             HHHHHHH
Confidence            9999993

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=87.35  E-value=0.32  Score=33.05  Aligned_cols=16  Identities=31%  Similarity=0.285  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHhhhhcc
Q 003660          789 MRRQAIKIQVILLCIV  804 (805)
Q Consensus       789 ~r~~~v~IQ~~~Rg~~  804 (805)
                      +..++++||+.||||.
T Consensus         2 ~~~aa~~IQa~~Rg~~   17 (26)
T smart00015        2 LTRAAIIIQAAWRGYL   17 (26)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5678999999999985

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=82.62  E-value=2.7  Score=52.29  Aligned_cols=19  Identities=32%  Similarity=0.371  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhhhHHHHHH
Q 003660          767 MAAAARIQHRFRSWKVRKE  785 (805)
Q Consensus       767 ~~AAv~IQ~~~Rg~~~Rk~  785 (805)
                      +.|+++||+.+|+|+.||+
T Consensus       800 ~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        800 IKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999975

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=82.10  E-value=2.7  Score=53.85  Aligned_cols=44  Identities=30%  Similarity=0.311  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003660          761 FEVRKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVILLCIV  804 (805)
Q Consensus       761 ~~~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~~~v~IQ~~~Rg~~  804 (805)
                      .|..+....|++||+++||+..||+|+...+.+.+||...+|.+
T Consensus       739 ~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~  782 (1463)
T COG5022         739 MRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFR  782 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34556678999999999999999999999999999999888865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	805
2cxk_A	95	Crystal Structure Of The Tig Domain Of Human Calmod		9e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-04
1uoh_A	226	Human Gankyrin Length = 226		5e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-04

>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin- Binding Transcription Activator 1 (Camta1) Length = 95

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 367 ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPP 426
           +TD SP W++     K+L+TG + +     + +N  C+  ++ VPA  +Q GV RC+ P 
Sbjct: 9   VTDYSPEWSYPEGGVKVLITGPWQE-----ASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 427 HSPGLFLLYMSLDGHKPISQVLNFEYRS 454
           H  GL  L ++ + ++ IS  + FEY+S
Sbjct: 64  HDTGLVTLQVAFN-NQIISNSVVFEYKS 90

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 559 EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 618
           +G+     D  G+  +HL A  G+   + L    G   + +D  G T LH AA  G +++
Sbjct: 59  QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 619 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
           V  LLS GA PN  +D   + P      D+A + G + +   L +Q 
Sbjct: 119 VKLLLSQGADPN-TSDSDGRTP-----LDLAREHGNEEVVKLLEKQG 159

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   +HL A  G+   + +    G  ++  D+ GWT LH AA  G+ ++V
Sbjct: 62  GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
             LL  GA      D  +Q+  GL A DI+  +G + LA  L
Sbjct: 122 EVLLKHGA------DVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           + +G+     D  G+  +H  A  G+   + L    G   + +D  G T LH+AA  G +
Sbjct: 57  LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK 116
Query: 617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
           ++V  LLS GA PN  +D   + P      D+A + G + +   L +Q 
Sbjct: 117 EIVKLLLSKGADPN-TSDSDGRTP-----LDLAREHGNEEIVKLLEKQG 159

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   +HL A  G+   + +   +G  ++ +DK G+T LH AA  G  ++V
Sbjct: 58  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
             LL AGA      D  +Q+  G    D+A ++G + +A  L + A
Sbjct: 118 EVLLKAGA------DVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           +  G+    +D  G   +HL A +G+   + +    G  ++ RD  GWT LH AA  G  
Sbjct: 34  MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
Query: 617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           ++V  LL  GA      D  +Q+  GL    +A+ +G
Sbjct: 94  EIVEVLLKYGA------DVNAQDAYGLTPLHLAADRG 124

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D +G   +HL A LG+   + +    G  ++ +D  G T L+ AAY+G  ++V
Sbjct: 58  GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIV 117
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
             LL  GA      D  +Q+  G  A DI+   G + LA  L
Sbjct: 118 EVLLKHGA------DVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   +HL A  G+   + +   +G  ++ +DK G+T LH AA  G  ++V
Sbjct: 70  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
             LL AGA      D  +Q+  G  A DI+   G + LA  L
Sbjct: 130 EVLLKAGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+    YD  G   +HL A  G+   + +   +G  ++ +D  G T LH AA  G  ++V
Sbjct: 70  GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             LL  GA      D  +Q+  G  A DI+   G + LA  L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   +HL A+ G+   + +   +G  ++  D YG+T LH AA  G  ++V
Sbjct: 70  GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             LL  GA      D  +Q+  G  A DI+   G + LA  L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 543 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 602
           L    KL+E     + + S  T  D   +  +H     G+T  +      G+ ++ +D  
Sbjct: 14  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLV 632
           GW+ LH AA  GR+++V  LL  GA+ N V
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAV 103

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 543 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 602
           L    KL+E     + + S  T  D   +  +H     G+T  +      G+ ++ +D  
Sbjct: 13  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLV 632
           GW+ LH AA  GR+++V  LL  GA+ N V
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAV 102

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D+ G   +HL A++G+   + +    G  ++  D +G T LH AA  G  ++V
Sbjct: 70  GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             LL  GA      D  +Q+  G  A DI+   G + LA  L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D+ G   +HL A++G+   + +    G  ++  D +G T LH AA  G  ++V
Sbjct: 70  GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             LL  GA      D  +Q+  G  A DI+   G + LA  L +
Sbjct: 130 EVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+    +D +G   +HL A  G+   + +    G  ++ +D  G+T LH AAY G  ++V
Sbjct: 70  GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
             LL  GA      D  +Q+  G  A DI+   G + LA  L +
Sbjct: 130 EVLLKYGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           +  G+     D  G   +HL A  G+   + +    G  +D  D +G+T LH AAY+G  
Sbjct: 34  MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHL 93
Query: 617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654
           ++V  LL  GA      D  + +  G+    +A+K G+
Sbjct: 94  EIVEVLLKNGA------DVNAMDSDGMTPLHLAAKWGY 125

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   +HL A  G+   + +   +G  ++ +DK G+T LH AA  G  ++V
Sbjct: 58  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
             LL AGA      D  +Q+  G    D+A   G + +A  L + A
Sbjct: 118 EVLLKAGA------DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 543 LTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK 601
           L    KL E L ER++ + S  T  D   +  +H     G+T  +      G+ ++ +D 
Sbjct: 13  LAYSGKLDE-LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 602 YGWTALHWAAYYGREKMVVDLLSAGAKPNLV 632
            GW+ LH AA  GR+++V  LL  GA  N V
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	805
2cxk_A	95	Camta1, calmodulin binding transcription activator	5e-31
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	2e-09
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	8e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	5e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	9e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-05
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	4e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1 Length = 95

 Score =  115 bits (290), Expect = 5e-31
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCF 423
              +TD SP W++     K+L+TG + +     + +N  C+  ++ VPA  +Q GV RC+
Sbjct: 6   SGMVTDYSPEWSYPEGGVKVLITGPWQE-----ASNNYSCLFDQISVPASLIQPGVLRCY 60

Query: 424 LPPHSPGLFLLYMSLDGHKPISQVLNFEYRSP 455
            P H  GL  L ++ +  + IS  + FEY+S 
Sbjct: 61  CPAHDTGLVTLQVAFNN-QIISNSVVFEYKSG 91

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 765 KKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
           K  AA  RIQ   R W +RK +L M+R AI +Q
Sbjct: 3   KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQ 35

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 750 AALKIQHAFRNFEVRKKM----AAAARIQHRFRSWKVRKEFLNMRRQA 793
           A ++IQ   R + +RK+      AA  +Q   R ++ R     +RR  
Sbjct: 7   ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTK 54

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 646
           +LF+   + L+ ++K G TALH AA+ G   +V  LL+ GA+ +L      +N     A 
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL------RNIEKKLAF 177

Query: 647 DIASKKG 653
           D+A+   
Sbjct: 178 DMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 6/61 (9%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
           G   D R+     A   A       ++       A   L       N       + +  +
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL------SNAEDYLDDEDSDLE 216

Query: 653 G 653
            
Sbjct: 217 H 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYT-WAILLFSWSGLSLDFRDKYGWTALHWAAYYGR 615
           ++  +   E        +H  A  G   W       + + ++  DK G TAL+WA + G 
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGH 118

Query: 616 EKMVVDLLS-AGAKPN 630
           + +V  L +    + N
Sbjct: 119 KDIVEMLFTQPNIELN 134

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
             K G   +  A Y    +   +L         +TD               + KG
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD------MSDTNWWKGTSKG 56

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 567 DVHGQGVIHLCAMLGYTWAIL----LFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDL 622
              G   +HL  +       +            L+F++    T LH A    + ++   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 623 LSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           L AG  P L          G     +A ++G       L
Sbjct: 65  LGAGCDPELRDF------RGNTPLHLACEQGCLASVGVL 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           RD  G T LH A   G    V  L  +   P+L +   + N  G     +AS  G+ G+ 
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 659 AFL 661
             L
Sbjct: 134 ELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
              G TALH A       +V  LL  GA  N           G +   +   +    +  
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVN------RVTYQGYSPYQLTWGRPSTRIQQ 201

Query: 660 FL 661
            L
Sbjct: 202 QL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFD 655
           L   +  G T LH A+ +G   +V  L+S GA  N           G  A  +A      
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 164

Query: 656 GLAAFL 661
            L + L
Sbjct: 165 DLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 2/32 (6%), Positives = 7/32 (21%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G++           ++   L     +  
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.9 bits (131), Expect = 6e-09
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            DK+  T L  A Y G    V  LLS GA      D T + P GL A +    + 
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
             + G   LH+AA  G+ +++  LL  GA  N
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 6/54 (11%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
                    WA   G    V D ++ G   N          GG      A+  G
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCG 51

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 549 LKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-------LLFSWSGLSLDFRDK 601
           L +  LE+   G+  T      + V+       +           L+FS SGL L  +DK
Sbjct: 96  LCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152

Query: 602 YGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
           +G TAL +     +   +  +     K NL
Sbjct: 153 WGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 6/48 (12%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVD------LLSAGAKPNLVTD 634
           G  +  R K G T        G   +          L  GA    +  
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
            +  +  AA  G  +  ++L   G +     +   ++    +     + +    ++ FL
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFL 61

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 550 KEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTW-AILLFSWSGLSLDFRDKYGWTALH 608
           ++WL            +   G   +H+ A  GYT    LL   +   ++ +D  GWT LH
Sbjct: 182 RQWLNSG---HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLH 237

Query: 609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 667
            AA++G+E+    L+             + N  G  A D+A +     L     +Q L+
Sbjct: 238 AAAHWGKEEACRILVENLCDME------AVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  GW  LH AA  G   +   L+S GA         + N  G    DIA ++  + L 
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG------AVNSEGDTPLDIAEEEAMEELL 155

Query: 659 AFL 661
              
Sbjct: 156 QNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           G  +++ +  G TALH A       MV  L+  GA  N
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 4/35 (11%), Positives = 8/35 (22%)

Query: 596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +   D           + G E  +   +    K  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK 35

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           +DK G T LH AA  G  ++V  LL AGA      D  +Q+  G  A DI+   G + LA
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQDKFGKTAFDISIDNGNEDLA 106

Query: 659 AFL 661
             L
Sbjct: 107 EIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                  L  AA  G++  V  L++ GA   
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVA 51

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 559 EGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREK 617
             ++       G+  +H  A +     +  L    G + D +D+ G T +  AA  GR +
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 327

Query: 618 MVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           +V+ L+  GA         + +     A  +A       +    
Sbjct: 328 VVMYLIQQGASVE------AVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D    T L  A    R ++V  L+ AGA P 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVD---LLSAGAKPNL--VTDPTSQNPGGLNAAD 647
              ++  D+ G TAL   A+      V     L+  GAK +        S+   G  A  
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284

Query: 648 IASKKG 653
            A++  
Sbjct: 285 YAAQVS 290

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 5/30 (16%), Positives = 7/30 (23%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAK 628
            D    TA   A       +V        +
Sbjct: 342 VDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 6/66 (9%), Positives = 12/66 (18%), Gaps = 1/66 (1%)

Query: 565 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS 624
           E   +           G  +       +       +      LH  A  G   +   +  
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITR 114

Query: 625 AGAKPN 630
                 
Sbjct: 115 ESVNII 120

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT--DPTSQNPGGLNAADIASKKGFDG 656
             ++  T LHW A     +   DL+   AK  +    D  + +        +A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 657 LAAFL 661
           L A+L
Sbjct: 181 LVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLS---AGAKPN 630
            +K   +ALH AA      M+V +L+         
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 521 YLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDV------HGQGVI 574
           Y+ +    K+ +   AK       +K++    LL+   +G   TE           +  +
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173

Query: 575 HL---CAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
           HL            +     +  +LD +   G TALH+       + +  LL   A   +
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233

Query: 632 VTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 672
                  N  G    DIA +   +     L  QAL  +FN 
Sbjct: 234 A------NESGETPLDIAKRLKHEHCEELL-TQALSGRFNS 267

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 551 EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWA----ILLFSWSGLSLDFRDKYGWT 605
           + L+  +V+  ++  +   + +             +    + L       L+ +D  G T
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285

Query: 606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
            L+ AA  G   +V  LL  GA P +       N  GL   D  
Sbjct: 286 CLNIAARLGNISIVDALLDYGADPFI------ANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           D++G T LHW       ++V  L+  G+   
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  G T L +A +    K V  LL +GA P + TD       G N+ D+A   G+  + 
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD------SGYNSMDLAVALGYRSVQ 151

Query: 659 AFL 661
             +
Sbjct: 152 QVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
              ++  D+ G+T L WAA +G+  +V  LL  GA P           G  +A  +A  K
Sbjct: 26  ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------LLGKGRESALSLACSK 79

Query: 653 G 653
           G
Sbjct: 80  G 80

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.3 bits (119), Expect = 5e-07
 Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
             K   +AL  A   G   +V  LL  G   N        +  G      A    
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVN------EYDWNGGTPLLYAVHGN 113

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 8e-07
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G+ ++  A   G   +   + S   K  
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.8 bits (110), Expect = 7e-06
 Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 6/51 (11%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
              ++H  A  G    +   +      N        +  G      A+  G
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVIN------HTDEEGFTPLMWAAAHG 47

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
                 + LH AA  G   +V  LLS GA         + N  GL   D    +    L 
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGA------SRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 659 AFLSEQA 665
               +  
Sbjct: 126 LLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D  GWT LH A  +G  K+V  LL   A  N
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +  G T LH A+  G    V  LL  G+ PN
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN 37

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 1/29 (3%), Positives = 10/29 (34%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
            + +G   + +      + +++      +
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHW 609
             LL +    +     +  G   +HL A  G+     +L    G+ +D   + G+T LH 
Sbjct: 262 ALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHV 317

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           A++YG  K+V  LL   A  N      ++   G +    A+++G   +   L
Sbjct: 318 ASHYGNIKLVKFLLQHQADVN------AKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 5e-08
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYT-WAILLFSWSGLSLDFRDKYGWTALHW 609
           E LLER    +       +G   +H+           LL    G S       G+T LH 
Sbjct: 163 ELLLER---DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHI 218

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           AA   + ++   LL  G   N      +++  G+    +A+++G   + A L
Sbjct: 219 AAKQNQVEVARSLLQYGGSAN------AESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.8 bits (133), Expect = 6e-08
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           + K G++ LH AA  G   +V  LL  GA PN        +  G     IA + G+  + 
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN------EVSSDGTTPLAIAKRLGYISVT 393

Query: 659 AFL 661
             L
Sbjct: 394 DVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
             S     K G+T LH AA YG+ ++   LL   A PN      +    GL    +A   
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN------AAGKNGLTPLHVAVHH 189

Query: 653 GFDGLAAFL 661
               +   L
Sbjct: 190 NNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 4e-07
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           + K   T LH AA  G   MV  LL   A PN           G     IA+++G     
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPN------LATTAGHTPLHIAAREGHVETV 129

Query: 659 AFL 661
             L
Sbjct: 130 LAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 9e-07
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYT-WAILLFSWSGLSLDFRDKYGWTALHW 609
           + LL R   G        +G   +H+ A       A  L    G S +     G T LH 
Sbjct: 196 KLLLPR---GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHL 251

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           AA  G  +MV  LLS  A  N        N  GL    + +++G   +A  L
Sbjct: 252 AAQEGHAEMVALLLSKQANGN------LGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
           G+S     + G T LH A++ G   +V +LL  GA PN        N        +A++ 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN------VSNVKVETPLHMAARA 57

Query: 653 GFDGLAAFL 661
           G   +A +L
Sbjct: 58  GHTEVAKYL 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHW 609
           ++LL+     +        G   +H  A  G+T  + LL   +G S +     G T L  
Sbjct: 328 KFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAI 383

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
           A   G   +   L     + +        +   ++  +  
Sbjct: 384 AKRLGYISVTDVLKVVTDETS---FVLVSDKHRMSFPETV 420

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 5e-08
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 646
           L    +   L+  D +G++ LHWA   GR  +V  L+  GA+ N        N G     
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------VMNRGDDTPL 76

Query: 647 DIASKKG 653
            +A+  G
Sbjct: 77  HLAASHG 83

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 6e-08
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
              ++  +++G   LH+A ++G++++  DL++ GA  +        N  G    D A   
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS------ICNKYGEMPVDKAKAP 148

Query: 653 GFDGLAAFL 661
             + L    
Sbjct: 149 LRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 565 EYDVHGQGVIHLCAMLGYTW-AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL 623
             + HG   +H     G    A  L + +G  +   +KYG   +  A    RE +     
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAE 158

Query: 624 SAGAKPN 630
             G   N
Sbjct: 159 KMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 5e-07
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            ++   T LH AA +G   +V  LL   A  N
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 6e-08
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  G T L +A      K V  LL+ GA      D       G    D+A   G+  + 
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD------SGYTPMDLAVALGYRKVQ 151

Query: 659 AFL 661
             +
Sbjct: 152 QVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 7e-08
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D+ G+T L WA+ +G  + V  LL  GA P+             +A  +AS  G
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWGADPH------ILAKERESALSLASTGG 80

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
             K   +AL  A+  G   +V  LL      N
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDIN 96

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G+T +  A   G  K+   + +   K  
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLF 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
              ++H  A  G    + + L  G   NLV      +  G      AS  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGD--NLV---NKPDERGFTPLIWASAFG 47

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 51.6 bits (125), Expect = 6e-08
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           +D    TALHWA  +  +++V  L+  GA  +      +Q+     A DI+   G + LA
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADVH------TQSKFCKTAFDISIDNGNEDLA 149

Query: 659 AFL 661
             L
Sbjct: 150 EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 14/32 (43%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           R K   T LH AA  G   +V  LL  GA  N
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           D  G + LH AA YG       LL AG   +
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D+ G TAL + A  G +K V  L  AGA  +
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
            + G TALH AA Y R ++V  L+  GA          ++  GL A ++A +        
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIE------VEDERGLTALELAREILKTTPKG 160

Query: 660 FL 661
             
Sbjct: 161 NP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
            D+ G TAL  A    +     + +  G +  L
Sbjct: 139 EDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 9e-08
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 567 DVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D  G+  +H  A +    A  +L   +G + D ++    T L  AA  G  +    LL  
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

Query: 626 GAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ 664
            A  +        +       DIA ++    +   L  +
Sbjct: 213 FANRD------ITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +L       LD R   G T L  AA    E M+ DL+++ A  N
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  G +ALHWAA        V LL  GA  +       QN        +A+++G    A
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKD------MQNNREETPLFLAAREGSYETA 206

Query: 659 AFL 661
             L
Sbjct: 207 KVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D+ G TALH AA Y R      LL A A  N
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADAN 84

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 567 DVHGQGVIHLCAMLGYTW-AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D  G+  +HL A    +  A  L   +    + +D  G T LH A     + +   L+  
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112

Query: 626 GAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
            A     TD  ++   G     +A++   +G+   L
Sbjct: 113 RA-----TDLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 4/32 (12%), Positives = 6/32 (18%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D         A       +V  L       +
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 6/85 (7%), Positives = 18/85 (21%), Gaps = 6/85 (7%)

Query: 565 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS 624
              V     +   A       + L       +      G              +    L+
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

Query: 625 AGAKPNLVTDPTSQNPGGLNAADIA 649
             A         +++     ++ ++
Sbjct: 345 PSAPVR------TRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
            L LD+ +K G + LHWA     E + +  +  G   N       ++        ++ + 
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN------MEDNEHTVPLYLSVRA 254

Query: 653 GFDGLAAFL 661
               L   L
Sbjct: 255 AMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
              D      +H AA  G+   V  L+  G  P 
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT 47

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 567 DVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D      IH+ A  G T  +  L   +G+S   ++++G TALH A  +G       L S 
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75

Query: 626 GAKPN 630
           G   +
Sbjct: 76  GEVHS 80

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 567 DVHGQGVIHLCAMLGYTW---AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL 623
              GQ  +H C  LG  +     +L    G S   +DK   T L  A  +   + +  ++
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMM 193

Query: 624 SAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
                 + +      N  G +    A    ++ +A   
Sbjct: 194 DTVPSKSSL-RLDYANKQGNSHLHWAILINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKM-VVDLL-SAGAKPN 630
            +    +   G TALHW    G E + ++ +L   GA P 
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query: 592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           +G ++          +  AA   +++++  L     +             G   A    K
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV------RSLNTGAGGAVKRKK 332

Query: 652 KGFDGLAAFL 661
           K    +    
Sbjct: 333 KAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                +G   +H A    +  +VV L+    +  
Sbjct: 78  VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 591 WSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS 650
            +G  LD +   G TALH+AA Y +   +  LL   A    V      N  G  A DIA 
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV------NEAGETALDIAR 267

Query: 651 KKGFDGLAAFLSEQALVAQFNDMTLAGNI 679
           KK        L +    AQ        ++
Sbjct: 268 KKHHKECEELLEQ----AQAGTFAFPLHV 292

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                   L  AA  G+ + V  LL AGA PN
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPN 39

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           G  LD  D +G   +  A   G   +   L +A  
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 599 RDKYGWT-ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D    T  +H AA  G    +V L  AGA+ +        +  G    D+A ++G
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD------VCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +++G   +      G  ++   LL  GA+PN
Sbjct: 41  LNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           R   G T L  A       +   L + GA               L+    +    
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEP------EDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 585 AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                 W  L L+  +  G T LH A  +   +MV  L  AGA  N
Sbjct: 141 EPRDEDW-RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 19/74 (25%)

Query: 596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD-------- 647
             +  + G TALH A  +  E  +  LL   A    +           +  +        
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-----------DLQNDLGQTALH 50

Query: 648 IASKKGFDGLAAFL 661
           +A+  G       L
Sbjct: 51  LAAILGEASTVEKL 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 595 SLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654
            LD ++  G TALH AA  G    V  L +AGA             GG  A  +A +   
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL------VAERGGHTALHLACRVRA 90

Query: 655 DGLAAFL 661
              A  L
Sbjct: 91  HTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 4/60 (6%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            ++ G TALH A           LL               +     + D          A
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPDTSHAPAA 129

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 593 GLSLDFRDK-YGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           G  L+  +   G T LH A       ++  LL AGA P       ++  GG      A  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT------ARMYGGRTPLGSALL 234

Query: 652 KGFDGLAAFL 661
           +    LA  L
Sbjct: 235 RPNPILARLL 244

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 567 DVHGQGVIHLCAMLGYTWA----ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDL 622
           D  G   +H+  + G   A    + LF   G  LD  +    T LH A       +V  L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 623 LSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           ++AGA P       + +  G  AA +A +         L
Sbjct: 66  VTAGASPM------ALDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 5e-07
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           +   G +ALH A+  G   +V  L+ +GA  +       +N        +A  +    + 
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSS------LKNCHNDTPLMVARSRRVIDIL 232

Query: 659 AFL 661
              
Sbjct: 233 RGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           R+  G TALH A     ++ V  LL  GA  +
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADID 143

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.2 bits (116), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D++G TA H A  +     +  LL + A      D  ++N  GL A  +A    
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGT--LDLEARNYDGLTALHVAVNTE 127

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 601 KYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAF 660
           K G + L  A       MV  LL  GA  N      +Q   G +A   AS +G   L   
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVN------AQMYSGSSALHSASGRGLLPLVRT 201

Query: 661 L 661
           L
Sbjct: 202 L 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 567 DVHGQGVIHLCAMLGYTW-AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
              G   +H  +  G       L   SG     ++ +  T L  A       ++    + 
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

Query: 626 GA 627
            A
Sbjct: 239 PA 240

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           + R K G T LH AA  G  ++V  LL+ GA  N
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +  K G T LH AA  G  + V  LLS GA  N
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN 36

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           R K G T  H A   G  ++V  L + GA  N
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.6 bits (125), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +L       LD R   G T L  AA    E M+ DL+++ A  N
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.6 bits (125), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKM 618
            +     D  G+  +H  A +    A  +L   +G + D ++    T L  AA  G  + 
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYET 173

Query: 619 VVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
              LL   A  +        +       DIA ++    +   L
Sbjct: 174 AKVLLDHFANRD------ITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D+ G TALH AA Y R      LL A A  N       Q+  G      A      G+ 
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADAN------IQDNMGRTPLHAAVSADAQGVF 74

Query: 659 AFL 661
             L
Sbjct: 75  QIL 77

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 567 DVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D  G+  +HL A    + A   L   +    + +D  G T LH A     + +   L+  
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80

Query: 626 GAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
            A     TD  ++   G     +A++   +G+   L
Sbjct: 81  RA-----TDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 4/32 (12%), Positives = 6/32 (18%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D         A       +V  L       +
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL---VTDPTSQNPGGLNAADIASKKGFD 655
            D+ G TAL  A    +     + +  G +  L   +     Q        +I  K+G  
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKG 199

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
            + G TALH AA Y R ++V  L+  GA          ++  GL A ++A +        
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIE------VEDERGLTALELAREILKTTPKG 161

Query: 660 FL 661
             
Sbjct: 162 NP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D+ G TAL + A  G +K V  L  AGA  +
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 599 RDKYGWTALHWAAYYGREKMVVD----LLSAGAKPNLVTDPTSQNPGGLNAADIASKKGF 654
           +D  G T LH       +         LLS     +L +     N  GL    +A  +G 
Sbjct: 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209

Query: 655 DGLAAFL 661
             +   L
Sbjct: 210 IVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           R   G TALH AA Y   +  + L+ A  +       TS+   G  A  IA       L 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVF-EPMTSELYEGQTALHIAVINQNVNLV 91

Query: 659 AFL 661
             L
Sbjct: 92  RAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 567 DVHGQGVIHLCAMLGYT-WAILLFS----WSGLSLDFRDKYGWTALHWAAYYGREKMVVD 621
              G+  +H+ A+      A++L           +      G TALH A       +V  
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 622 LLSAGAKPN 630
           LL+ GA  +
Sbjct: 94  LLARGASVS 102

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 590 SWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           S           YG   L +AA  G E++V  L+  GA   
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           +DK G T LH AA  G  ++V  LL AGA  N      +++  G     +A++ G
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHLAARNG 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +DK G T LH AA  G  ++V  LL AGA  N
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 3e-06
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           +DK G T LH AA  G  ++V  LL AGA
Sbjct: 97  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPN 630
           G T LH AA  G  ++V  LL AGA  N
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN 29

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 3e-07
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           + +DK G T LH AA  G  ++V  LL AGA  N
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           +DK G T LH AA  G  ++V  LL AGA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.7 bits (102), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPN 630
           G T LH AA  G  ++V  LL AGA  N
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN 29

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D + +T LH AA   R ++   LLS GA P L       N  G +A D+A         
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL------VNCHGKSAVDMAPTPELRERL 173

Query: 659 AFL 661
            + 
Sbjct: 174 TYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 4e-07
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHW 609
           E LL +   G+   E +      +H+ A   +   + +L    G  ++  D  G TALH 
Sbjct: 231 ELLLRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHR 286

Query: 610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK 651
           AA  G  +    LLS G+ P+        +  G  AA + ++
Sbjct: 287 AALAGHLQTCRLLLSYGSDPS------IISLQGFTAAQMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 567 DVHGQGVIHLCAMLGYTWAI----LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDL 622
               +  +H      +        LL    G +++ ++K   T LH AA      ++  L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

Query: 623 LSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
              GAK N      + +  G  A   A+  G       L
Sbjct: 267 HKHGAKMN------ALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 567 DVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D      +HL A       + LL    G  +  +DK G   LH A  YG  ++   LL  
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 626 GAKPN 630
           GA  N
Sbjct: 114 GACVN 118

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D    T LH AA Y R ++V  LL  GA  +      +++ GGL     A   G   + 
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH------AKDKGGLVPLHNACSYGHYEVT 107

Query: 659 AFL 661
             L
Sbjct: 108 ELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 10/102 (9%)

Query: 563 TTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA---YYGREKMV 619
              Y+  G  ++               +   +    + +   TALH A    +  R+++ 
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLA-LEIINFKQPQSHETALHCAVASLHPKRKQVA 230

Query: 620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
             LL  GA  N       +N   +    +A+++  + +   L
Sbjct: 231 ELLLRKGANVN------EKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 3e-05
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 8/78 (10%)

Query: 585 AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLL-SAGAKPNLVTDPTSQNPGGL 643
           A+ L            +Y    L  AA  G E+ ++ LL       +      + +    
Sbjct: 7   ALDLAD-PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH------ASDGRKS 59

Query: 644 NAADIASKKGFDGLAAFL 661
               +A+      +   L
Sbjct: 60  TPLHLAAGYNRVRIVQLL 77

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  G   +H A   G    VV  L+A +  +       ++  GL   ++A ++G   L 
Sbjct: 97  PDGTGALPIHLAVQEGHTA-VVSFLAAESDLH------RRDARGLTPLELALQRGAQDLV 149

Query: 659 AFLSEQ 664
             L   
Sbjct: 150 DILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 585 AILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLN 644
             LL     +  D  +++G TAL     +G   + ++LL  GA PN       Q+  G +
Sbjct: 19  RRLLHR-ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN------VQDTSGTS 70

Query: 645 AADIASKKGFDGLAAFL 661
               A++ GF      L
Sbjct: 71  PVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D  G + +H AA  G    +  L+  GA  N
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)

Query: 603 GWTALHWAAYYGREKMVVDLL-SAGAKPN 630
               L  AA  G  + V  LL      P+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPD 30

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 715 EAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKM------A 768
            A  RIQ   R   ++ +   +R            AA+ IQ   R  + R          
Sbjct: 769 AACIRIQKTIRGWLMRKKYMRMRR-----------AAITIQRYVRGHQARCYATFLRRTR 817

Query: 769 AAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
           AA  IQ   R + VRK +  MR   I +Q
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQ 846

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 20/108 (18%)

Query: 710 YRTAAEAAARIQAAFREH--------------SLKVQTKAIRFSSPEEEAQNIIAALKIQ 755
           Y     AA  IQ   R H              ++ +Q     +   +       A + +Q
Sbjct: 787 YMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQ 846

Query: 756 HAFRNFEVRKKMA------AAARIQHRFRSWKVRKEFLNMRRQAIKIQ 797
              R + VR K         +  IQ   R W  R  +    +  + +Q
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAAD--IASKKGFDG 656
            D  GWT LH AA     ++   L+ +GA    +T           AAD     ++G+  
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT-----YSDMQTAADKCEEMEEGYTQ 153

Query: 657 LAAFL 661
            + FL
Sbjct: 154 CSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           +  G  +L         K   + ++ G +          NP  L     +S +G
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-------NPLPLALLLDSSLEG 48

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 6/54 (11%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           +      L  ++  G   +V  ++     P+        N  G+ A   A   G
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS------LPNDEGITALHNAVCAG 81

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +  G TALH A   G  ++V  L+  G   N
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 6/62 (9%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDG 656
            + D             G  +    L     K  +       N G + A      +  D 
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI------MNKGVIYALWDYEPQNDDE 186

Query: 657 LA 658
           L 
Sbjct: 187 LP 188

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 4e-07
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            + +G + LH AA   R   VV  LS  +          +N  G      AS   
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVT------LKNKEGETPLQCASLNS 221

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           RD      LHWAA+ G   +   LL+A    +      + N  G +   IA+++      
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLH------AVNIHGDSPLHIAARENRYDCV 193

Query: 659 AFL 661
              
Sbjct: 194 VLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.3 bits (119), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           +D  GWT + WA  Y    +V  LLS G+  N       ++         A+  G   +A
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN------IRDNEENICLHWAAFSGCVDIA 160

Query: 659 AFL 661
             L
Sbjct: 161 EIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 5e-06
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           D   +   T L  AA     + V  L+ AGA  +       ++  G     +A+KKG
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------PKDAEGSTCLHLAAKKG 88

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.0 bits (113), Expect = 7e-06
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
             +   + LH AA  G   +   L+ AGA  +      + +         A++  
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANID------TCSEDQRTPLMEAAENN 55

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.6 bits (112), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           +D  G T LH AA  G  ++V  LLS G       D   Q+ GG      A++  
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM-----DVNCQDDGGWTPMIWATEYK 122

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 8e-05
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           ++K G T L  A+   +    + +  A  
Sbjct: 206 KNKEGETPLQCASLNSQVWSALQMSKALQ 234

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           R+  G T L  A+ YGR ++V  LL  GA  +      +++  GL A   A   G   + 
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADIS------ARDLTGLTAEASARIFGRQEVI 183

Query: 659 AFL 661
              
Sbjct: 184 KIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.7 bits (120), Expect = 6e-07
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 565 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS 624
             D +G+ V  +         +          ++RD Y  T L  A   G E  +  L+ 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 625 AGAKPN 630
              K  
Sbjct: 57  NFDKLE 62

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.5 bits (117), Expect = 1e-06
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D  G TAL WA    R  +   LLS G+  N
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D  G T L W+  +G  +M   LL  GA  N
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.5 bits (104), Expect = 7e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           RD  G TA   A  +GR++++        
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL----VTDPTSQNPGGLNAADIASKKG 653
            D YG+TA   AA YG+ K +  L   GA  NL      D      GG  A   A++KG
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            L     + ++  D  G TAL  A     +K+   L   GA  +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 3e-06
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           R K G T    AA  G  K++   LS GA  N
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.2 bits (116), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGL 657
           R + G T L  A       +V  LL     + N        +  G  A  +A +     +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN------DTDSDGKTALLLAVELKLKKI 268

Query: 658 AAFL 661
           A  L
Sbjct: 269 AELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVD----LLSAGAKPNLVTDPTSQNPGG 642
           +L    G  ++  D  G  AL  A     +  V      LL  GA  N       +   G
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN------VRGERG 219

Query: 643 LNAADIASKKGFDGLAAFL 661
                +A +K   GL   L
Sbjct: 220 KTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
           ++ GWT LH A    RE +V  LL  GA P        +   G     +A+  G   L  
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHGADPV------LRKKNGATPFLLAAIAGSVKLLK 89

Query: 660 FL 661
             
Sbjct: 90  LF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 5/62 (8%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
                  L  A       +V  LL  GA  N          GG      A +   + +  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVE 56

Query: 660 FL 661
            L
Sbjct: 57  LL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLS-AGAKPN 630
               +   K G TAL  AA  G  +++  LL   GA  N
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
           G  LD RD +G   +  A   G   +   L +A                G N A I + +
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----------GSNHARIDAAE 149

Query: 653 G 653
           G
Sbjct: 150 G 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 599 RDKYGWT-ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D    T  +H AA  G    +V L  AGA+ +       ++  G    D+A + G
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD------VRDAWGRLPVDLAEELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +     L  AA  GR + V  LL AGA PN
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN 39

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            + YG   +      G  ++   LL  GA+PN   D              A+++GF    
Sbjct: 41  PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CAD----PATLTRPVHDAAREGFLDTL 94

Query: 659 AFL 661
             L
Sbjct: 95  VVL 97

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 6e-07
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 6/56 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLL-SAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D+ G T L WAAY         LL +     NL             A   A   G
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-----KYHKNTALHWAVLAG 188

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.1 bits (121), Expect = 8e-07
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            DK   T LHWAA   R  +V   +S GA  +
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 567 DVHGQGVIHLCAMLGYTWAI--LLFSWSGLSLDFRDKY-GWTALHWAAYYGREKMVVDLL 623
           D +G   +   A   ++     LL ++  +S++  DKY   TALHWA   G   ++  LL
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197

Query: 624 SAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
            AGA  +      +QN  G +A D+A ++    +   L
Sbjct: 198 EAGANVD------AQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 6/63 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D Y    +  A  YG  +   +L+ AG            +   +     A+      L 
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVR------QPDKENVTLLHWAAINNRIDLV 58

Query: 659 AFL 661
            + 
Sbjct: 59  KYY 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAA 659
                T LHWA   G   MVV L+  GA P+        +  G +   +A++ G   + A
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPS------LIDGEGCSCIHLAAQFGHTSIVA 126

Query: 660 FL 661
           +L
Sbjct: 127 YL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D  G + +H AA +G   +V  L++ G   +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           ++  G +AL  A       M+  L  A     
Sbjct: 206 QNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
                  D+   TALHWA   G  ++V  LL  G   N       ++  G +   IA+  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASA 83

Query: 653 GFDGLAAFLSEQA 665
           G D +   L  + 
Sbjct: 84  GXDEIVKALLVKG 96

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
           +D  GW+ LH AA  G +++V  LL  GA  N      + N  G      A+ K    +A
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVN------AVNQNGCTPLHYAASKNRHEIA 122

Query: 659 AFLSEQA 665
             L E  
Sbjct: 123 VMLLEGG 129

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           +V+G+     + +G   +H  A        ++    G + D +D Y  TA+H AA  G  
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
           KMV  LL   A  N       Q+  G     +A  +     A FL  Q 
Sbjct: 153 KMVHILLFYKASTN------IQDTEGNTPLHLACDEERVEEAKFLVTQG 195

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           +  G+     D +    +H  A  G    + +  +   S + +D  G T LH A    R 
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 617 KMVVDLLSAGAKPN 630
           +    L++ GA   
Sbjct: 186 EEAKFLVTQGASIY 199

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE 616
           +   + T   D  G   +HL                G S+   +K   T L  A   G  
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216

Query: 617 KMVVDLLSAGAKPNL 631
            +++  L+ G + ++
Sbjct: 217 GLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 567 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG 626
           D  G   +H+ A  G    +      G  ++  ++ G T LH+AA   R ++ V LL  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 627 AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA 665
           A P+      +++     A   A+ KG   +   L    
Sbjct: 130 ANPD------AKDHYDATAMHRAAAKGNLKMVHILLFYK 162

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D  G T L+ A +    ++   L+  GA  N       QN    +    A  +G
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADIN------LQNSISDSPYLYAGAQG 83

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           ++    +   +A   GR +++  +L          D    N  G NA   A++KG
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHAT-----PDLNKHNRYGGNALIPAAEKG 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           +       L  A     +K+   L     + +        +  G    +IA    
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVD------EVDTEGNTPLNIAVHNN 50

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 599 RDKYGWTALHWAAYYGRE----KMVVDLL-SAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           ++ +G+TAL  A          + +V LL   GA  ++      ++  G  A D A++KG
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI------KDNSGRTAMDYANQKG 189

Query: 654 FDGLAAFL 661
           +  ++  L
Sbjct: 190 YTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
            ++YG  AL  AA  G    V  LL  G 
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLS 624
           +D  G TA+ +A   G  ++   L  
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
           + K   + LH       E++   L+  GA         ++N  G    ++   + 
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQ------AKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 7/63 (11%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
                 T L  A   G    V  LL  GA     +D         +    A+++G     
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-------LASPIHEAARRGHVECV 173

Query: 659 AFL 661
             L
Sbjct: 174 NSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 646
            L ++ G ++D +  +  T L+ A    +   V  LL +GA  N       Q  G  +  
Sbjct: 175 SLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-------QGKGQDSPL 226

Query: 647 DIASKKGFDGLAAFL 661
               +   + LA  L
Sbjct: 227 HAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTD 634
           +       + LH A   G    V  LL  GA+ N VT 
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 569 HGQGVIHLCAMLGYT-WAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGA 627
             QG +      G   +  +    + L  D      W+ +H AA +G +  + +L+S G 
Sbjct: 26  GKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGW 83

Query: 628 KPNLVTD 634
             N++T 
Sbjct: 84  AVNIITA 90

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +    + +H AA  G  + V  L++ G   +
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNID 184

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 1/32 (3%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           ++  G   +           +  L   GA   
Sbjct: 251 KNAEGKRPVELVPPESPLAQLF-LEREGASLP 281

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +DK G   LH A  YG  ++   L+  GA  N
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVN 102

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAA 646
            L +   ++    +    T LH+AA Y R  +V  LL  GA  +      +++ GGL   
Sbjct: 26  KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH------AKDKGGLVPL 79

Query: 647 DIASKKGFDGLAAFL 661
             A   G   +A  L
Sbjct: 80  HNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D + +T LH AA  G+ ++   LL  GA P 
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGA 627
           +      L  AA  G  + V  L +  +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS 32

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D  G T LH AA +G  ++V  LL  GA  N      +Q+  G  A DI+   G
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN------AQDKFGKTAFDISIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D  G T L  AA +G  ++V  LL  GA  N
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 2e-06
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            D  GWT LH AA+ G  ++V  LL  GA  N
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 4e-04
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLS 624
           +DK+G TA   +   G E +   L  
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 4e-04
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPN 630
               L  AA  GR+  V  L++ GA  N
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVN 41

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA 658
            D  G   LH AA  G  ++V  L+   A     ++   +N  G  A D+A   G + + 
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTA-----SNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 659 AFL 661
           + +
Sbjct: 154 SLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D+ G+  +H AA  G    +  LL   A  N
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 46.2 bits (111), Expect = 6e-06
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           R+  G TA   A  YGR ++V  + + GA
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           ++ +G TAL      G  ++   LL  GA P+
Sbjct: 34  QNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 603 GWTALHWAAYYGREKMVVDLLSAGAKPN 630
               L  AA  G  + +  LL      N
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVN 32

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 592 SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPT 636
           S       D +G +A ++A      ++V  LL+AGA  NL+ +  
Sbjct: 20  SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
           GL     D  G TAL++A   G  + V   +    +            G   +   A   
Sbjct: 85  GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG-----KTGWKTSFYHAVML 139

Query: 653 GFDGLAAFL-SEQALVAQFND 672
               + ++  SE         
Sbjct: 140 NDVSIVSYFLSEIPSTFDLAI 160

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                 + +H     G   M++ LL      N
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 3/33 (9%), Positives = 8/33 (24%), Gaps = 1/33 (3%)

Query: 599 RDKYGWT-ALHWAAYYGREKMVVDLLSAGAKPN 630
            +   +   +  A      +M+  L        
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 601 KYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
                 LH AA     K+V  LL +G   +
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLDDS 89

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D+YG T L+ A  +G  ++V  LL  GA  N
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
            D  G+T LH AA+ G  ++   LL  GA  N      +Q+  G  A DI+   G
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN------AQDKFGKTAFDISIGNG 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLS 624
           +DK+G TA   +   G E +   L  
Sbjct: 109 QDKFGKTAFDISIGNGNEDLAEILQK 134

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 14/45 (31%)

Query: 586 ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            L        L+     G T LH A      ++   L+  GA   
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 6e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           +D+ G   LHW+  +   ++   LLS     N
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSA-GAKPNLVTDPTSQNPGGLNAADIASKK 652
           +DK GWT L  A   G     V L+   GA+ +        +  G  A D+A  +
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD------LVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 597 DFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
           D+ D  GWT  H A   G  ++V  L     KP+L
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 4e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGA 627
           +DK+    LH AA  G  K++  L   G 
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS--KKGFDG 656
            D +GWT LH AA      + + L+  GA     T        G  A +     ++G+  
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD-----GATAFEKCDPYREGYAD 137

Query: 657 LAAFLSEQ 664
            A +L++ 
Sbjct: 138 CATYLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
           ++ G TALH A       +V  L++AGA  N
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVN 81

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 585 AILLFSWS-GLSLDFRDKYGWTALHWAAYYGREKMV 619
             L F     +++  RD    T   WAA +G+E  V
Sbjct: 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               +  +  G T L  AA  G+ ++   +L       
Sbjct: 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G +ALH A      + V  L+  GA  +
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLG-YTWAILLFSWS---------------GL 594
           ++LL+   + +  +  D  G  V+H    +   T     F  S                 
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

Query: 595 SLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK 628
             +  ++ G T L  AA  G+  ++  +L     
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G TALH A       +V  L+  GA   
Sbjct: 97  SYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
            +  G + L  AA  G+  +   ++       
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 599 RDKYGWTALHWAAYYGREKMVVDLLSAGAKPN 630
               G TALH A     +  V  L+  GA  +
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 578 AMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTS 637
                  A      +G +++  D  G   LH A   G   +    L  GA      D  +
Sbjct: 243 TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA------DLGA 296

Query: 638 QNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNISGSLQTGSTITVDTQNLT 697
           ++  G +   IA +     +   L     +A+  +   A   +G  +T   I  D   + 
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLL----RLAKMREAEAAQGQAGD-ETYLDIFRDFSLMA 351

Query: 698 EDE 700
            D+
Sbjct: 352 SDD 354

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 366 SITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLP 425
            I  +SP+  ++     +++ G             +  V G + V +E +     R   P
Sbjct: 7   CIKAISPSEGWTTGGATVIIIGDN-------FFDGLQVVFGTMLVWSELITPHAIRVQTP 59

Query: 426 P-HSPGLFLLYMSLDGHKPISQVLNFEYRSPQLHAP 460
           P H PG+  + +S    K   +     +    L+ P
Sbjct: 60  PRHIPGVVEVTLSYKS-KQFCKGAPGRFVYTALNEP 94

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 4/61 (6%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
              +       + A   AA  G   ++  L        +            +A  +A++ 
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM----AMIQAENYHAFRLAAEN 173

Query: 653 G 653
           G
Sbjct: 174 G 174

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 15/71 (21%), Gaps = 9/71 (12%)

Query: 593 GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKK 652
                         L  A   G +     LLS  +   L            N   I    
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---------NNYYINETG 359

Query: 653 GFDGLAAFLSE 663
           G   L A   E
Sbjct: 360 GRLDLRAVALE 370

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 764 RKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVI 799
            +     +  Q   R + +RK +  ++ Q I + VI
Sbjct: 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVI 811

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 87/664 (13%), Positives = 180/664 (27%), Gaps = 194/664 (29%)

Query: 68  RKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLD 127
           + +L  F      +    D K V++  + + +  EE  H+  +    S T   R +W L 
Sbjct: 19  KDILSVFEDA---FVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGT--LRLFWTLL 72

Query: 128 KTLENIVLVHYRETHEGTPATPPNSH--SSSISDQS-APLLLSEEFNSGAGHAYSAGG-- 182
              E +V     E          N     S I  +   P +++  +       Y+     
Sbjct: 73  SKQEEMVQKFVEEVLR------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 183 ------------------KELQAPNESLTV----------------QNHEMRLHELNTLE 208
                              EL+ P +++ +                 +++++      + 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 209 WDDLVVTNDSNDSTEPRGDKFSHFDQQNHTAIKGAASNGSFFPSHDSYAEVSSGGCLTSL 268
           W +L   N      E         D    +    +++       H   AE      L  L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAE------LRRL 237

Query: 269 SQPIDRSNNTQFNN----LDGVYSE------------LMGTQ-SSVSSQRN--EFGEVCT 309
            +      +  + N    L  V +             L+ T+   V+   +      +  
Sbjct: 238 LK------SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 310 GDSLDILAGDGLQSQDSFGKWMNYIMTDSPGSVDDPVLEPSISSGHHQFTVPEHLFSITD 369
                 L  D  + +    K+++    D P           + + +     P  L  I  
Sbjct: 292 DHHSMTLTPD--EVKSLLLKYLDCRPQDLP---------REVLTTN-----PRRLSII-- 333

Query: 370 VSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCF--LPPH 427
              A +  +         + H +C  L+      +   V  PAE+ +  ++      PP 
Sbjct: 334 ---AESIRDGLATW--DNWKHVNCDKLTTIIESSL--NVLEPAEYRK--MFDRLSVFPPS 384

Query: 428 SPGLFLLYMSLDGHKPI-SQVL-----NFEYRSPQLHAPVASSEDKS----KWEEFQVQM 477
           +               I + +L     +       +   V      S    + +E  + +
Sbjct: 385 A--------------HIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISI 428

Query: 478 RLAHLLFSSFKGLNILSSKVPPNSLKEAKKFASKSTCISNSWAYLFKSVGDKRTSLPEAK 537
                ++        L  KV   +     +     + +     Y      D    +P   
Sbjct: 429 ---PSIY--------LELKVKLENEYALHR-----SIVD---HYNIPKTFDSDDLIPPYL 469

Query: 538 DSFF------ELTLKSKLKEWLLERVVEGSKTTEY-DVH--GQGVIHLCAMLGYTWAILL 588
           D +F       L      +   L R+V       + D     Q + H       + +IL 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSIL- 521

Query: 589 FSWSGLSLDFRDKY-GWTALHWAAYYGREKMVVDLLS--AGAKPNLVTDPTS-------Q 638
                     +  Y  +   +   Y   E++V  +L      + NL+    +        
Sbjct: 522 ----NTLQQLK-FYKPYICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Query: 639 NPGG 642
               
Sbjct: 574 AEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	805
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d2cxka1	82	b.1.18.1 (A:872-953) Calmodulin binding transcript	7e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-11
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 548 KLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL 607
            + + L++    G         G   +H+ +  G    +         ++ + K G++ L
Sbjct: 278 PVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 334

Query: 608 HWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 667
           H AA  G   +V  LL  GA PN        +  G     IA + G+  +   L  + + 
Sbjct: 335 HQAAQQGHTDIVTLLLKNGASPNE------VSSDGTTPLAIAKRLGYISVTDVL--KVVT 386

Query: 668 AQFNDMTL 675
            + + + +
Sbjct: 387 DETSFVLV 394

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 633
           +H+ + +G+   +      G S +  +    T LH AA  G  ++   LL   AK N   
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--- 60

Query: 634 DPTSQNPGGLNAADIASKKGFDGLAAFLSEQ 664
              ++          A++ G   +   L E 
Sbjct: 61  ---AKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 9e-07
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
           + LL+R   G+     +V  +  +H+ A  G+T        +   ++ + K   T LH A
Sbjct: 17  KNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA 73

Query: 611 AYYGREKMVVDLLSAGAKPN 630
           A  G   MV  LL   A PN
Sbjct: 74  ARIGHTNMVKLLLENNANPN 93

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 25/65 (38%)

Query: 566 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
             V G   +HL A  G+   + L      + +  +K G T LH  A  G   +   L+  
Sbjct: 227 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 286

Query: 626 GAKPN 630
           G   +
Sbjct: 287 GVMVD 291

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-05
 Identities = 16/71 (22%), Positives = 24/71 (33%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
            +        G   +H+ A  G      L        +   K G T LH A ++    +V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 620 VDLLSAGAKPN 630
             LL  G  P+
Sbjct: 182 KLLLPRGGSPH 192

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 605 TALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           T LH A++ G   +V +LL  GA PN        N        +A++ G   +A +L
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN------VSNVKVETPLHMAARAGHTEVAKYL 52

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 575 HLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTD 634
           H+ A  G+   +L       S     K G+T LH AA YG+ ++   LL   A PN    
Sbjct: 104 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---- 159

Query: 635 PTSQNPGGLNAADIASKKGFDGLAAFLSEQ 664
             +    GL    +A       +   L  +
Sbjct: 160 --AAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
           E LLER    +       +G   +H+         + L    G S       G+T LH A
Sbjct: 149 ELLLER---DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 205

Query: 611 AYYGREKMVVDLLS 624
           A   + ++   LL 
Sbjct: 206 AKQNQVEVARSLLQ 219

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 9e-11
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 548 KLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTA 606
            +   LL+    G+        G+  + L     +   +  L     + ++  D  G TA
Sbjct: 200 AITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 607 LHWAAYYGREKMVVDLLSAGAKPN 630
           L  A     +K+   L   GA  +
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 568 VHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS-AG 626
                V  L  +      + L   +    +   K G TAL  AA  G  +++  LL   G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 627 AKPNLVTD 634
           A  N   +
Sbjct: 173 ADVNACDN 180

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 367 ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPP 426
           +TD SP W++     K+L+TG + +       +N  C+  ++ VPA  +Q GV RC+ P 
Sbjct: 2   VTDYSPEWSYPEGGVKVLITGPWQEAS-----NNYSCLFDQISVPASLIQPGVLRCYCPA 56

Query: 427 HSPGLFLLYMSLDGHKPISQVLNFEYR 453
           H  GL  L ++ +    IS  + FEY+
Sbjct: 57  HDTGLVTLQVAFNNQ-IISNSVVFEYK 82

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 565 EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLS 624
            +   G   +H+ A  GYT  + L   +   ++ +D  GWT LH AA++G+E+    L+ 
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 625 AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV 667
                         N  G  A D+A +     L     +Q L+
Sbjct: 254 NLCDMEA------VNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 584 WAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGL 643
               L    G + D +D+ G T +  AA  GR ++V+ L+  GA           +    
Sbjct: 202 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA------VDATDH 255

Query: 644 NAADIASKKGFDGLAAFLSE 663
            A  +A       +      
Sbjct: 256 TARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           GS   + D  G+  I L A  G    ++     G S++  D    TA   A        +
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN-I 269

Query: 620 VDLL 623
           VD+ 
Sbjct: 270 VDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNL 631
            ++  T LHW A     +   DL+   AK  +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 554 LERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY 613
           ++      ++   D +G+    +   L   W I         L+ +D  G T L+ AA  
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWII------ANMLNAQDSNGDTCLNIAARL 269

Query: 614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA 649
           G   +V  LL  GA P +       N  GL   D  
Sbjct: 270 GNISIVDALLDYGADPFI------ANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 506 KKFASKSTCISNSWAYLFKSVGDKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTE 565
             F S    I  +      +  +++  L    ++F +  L  +++E       + S    
Sbjct: 12  SDFLSSPLKIMKALPSPVVNDNEQKMKL----EAFLQRLLFPEIQEMPTSLNNDSSNRNS 67

Query: 566 YDVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFR-DKYGWTALHWAAYYGREKMVVDLL 623
                       +       +   F  + L+L+   D++G T LHW       ++V  L+
Sbjct: 68  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

Query: 624 SAGAKPN 630
             G+   
Sbjct: 128 KHGSNRL 134

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
             LLE    G+     D +    +H  A  G    I +  +   S + +D  G T LH A
Sbjct: 120 VMLLEG---GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE 663
               R +    L+S GA   +      +N        +A K G   +   + E
Sbjct: 177 CDEERVEEAKLLVSQGASIYI------ENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVT 633
           +H+ A  G    +      G  ++  ++ G T LH+AA   R ++ V LL  GA P+   
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 133

Query: 634 D 634
            
Sbjct: 134 H 134

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 596 LDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKG 653
             +  + G TALH A  +  E  +  LL   A    +     QN  G  A  +A+  G
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL---DLQNDLGQTALHLAAILG 56

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAK 628
           +HL         + L   +G     R   G T L  A       +   L + GA 
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 18/80 (22%), Positives = 28/80 (35%)

Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
           ++LL            +  GQ  +HL A+LG    +     +G  +   ++ G TALH A
Sbjct: 26  DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85

Query: 611 AYYGREKMVVDLLSAGAKPN 630
                      LL       
Sbjct: 86  CRVRAHTCACVLLQPRPSHP 105

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 567 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG 626
           D  G+  +H  A +  T A+ +      + D +D    T L  AA  G  +    LL   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 627 AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661
           A   +       +       D+AS++    +   L
Sbjct: 180 ANREI------TDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 566 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
              +G+  +HL   L     + L    G  ++     G++           ++   L   
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

Query: 626 GAKPNLVTDPTSQN 639
             + NL   P S++
Sbjct: 201 TLE-NLQMLPESED 213

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D+     +H      +   + L    G  +  + K+  TA   +   G E  +
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-L 148

Query: 620 VDLL 623
            ++L
Sbjct: 149 AEIL 152

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 565 EYDVHGQGVIHLCAMLGYTWA---ILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVD 621
           +  +  + +  + A+ G + A   + L   S   +       + A   AA  G   ++  
Sbjct: 85  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 622 LLSAGAKPN 630
           L        
Sbjct: 145 LCELAPTEI 153

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 5/114 (4%)

Query: 567 DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK--YGWTALHWAAYYGREKMVVDLLS 624
                    L A  G+   +        +          + A   AA  G   ++  L  
Sbjct: 123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

Query: 625 AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGN 678
                        Q          A  +G   +  FL +  ++  + ++     
Sbjct: 183 LAPTEA---TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY 233

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 566 YDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
               G+  +           + L    G +++ +   G +ALH A+  G   +V  L+ +
Sbjct: 140 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 199

Query: 626 GAKPNLVTDPTSQNPGGLNAADIASKKG 653
           GA  +L      +N        +A  + 
Sbjct: 200 GADSSL------KNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 9/60 (15%), Positives = 18/60 (30%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+        G   +H  +  G    +     SG     ++ +  T L  A       ++
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 575 HLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG 626
                        L   +  ++  R+  G TA   A  YGR ++V  + + G
Sbjct: 105 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
           G+     D  G   IHL    G+T  +   +     L  RD  G T L  A   G + +V
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLV 149

Query: 620 VDLLS 624
             L  
Sbjct: 150 DILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 21/70 (30%)

Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMV 619
                +    G   +H C +      + L      S++  ++ G T L  A     E   
Sbjct: 71  SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 130

Query: 620 VDLLSAGAKP 629
             L  A +  
Sbjct: 131 ELLTQALSGR 140

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 764 RKKMAAAARIQHRFRSWKVRKEFLNMRRQAIKIQVI 799
            +     +  Q   R + +RK +  ++ Q I + VI
Sbjct: 728 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVI 763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 550 KEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS-LDFRDKYGWTALH 608
            E     +  G+     D   Q  +H  A +G    I L    G S ++++DK GWT L 
Sbjct: 118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 609 WAAYYGREKMVVDLLSA-GAKPNLVTDPTSQNPGGLNAADIASKK 652
            A   G     V L+   GA+ +L       +  G  A D+A  +
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDL------VDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 574 IHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAG 626
           +H   M    + +  L       L  +D+ G   LHW+  +   ++   LLS  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 4/62 (6%)

Query: 567 DVHGQGVIHLCAMLGYTWAI-LLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           D  G   +      G+  A  LL    G   D  D  G  A   A     E++    L+ 
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

Query: 626 GA 627
             
Sbjct: 226 VV 227

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 575 HLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSA 625
           H  A  G+   +++   +G  LD RD +G   +  A   G   +   L +A
Sbjct: 74  HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	805
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.7
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.69
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.69
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.66
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.66
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.66
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.63
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.61
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.59
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.58
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.57
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.56
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.55
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.54
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.53
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.53
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.51
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.5
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.49
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.49
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.45
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.44
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.44
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.42
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.39
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.37
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d2cxka1	82	Calmodulin binding transcription activator 1 {Huma	99.33
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.33
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.32
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.28
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.24
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.15
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.1
d1qhoa1	81	Five domain "maltogenic" alpha-amylase (glucan 1,4	97.97
d1p7hl1	103	T-cell transcription factor NFAT1 (NFATC2) {Human	97.94
d1uadc_	92	Exocyst complex component Sec5, Ral-binding domain	97.9
d3bmva1	83	Cyclomaltodextrin glycanotransferase, domain D {Th	97.63
d1cyga1	83	Cyclomaltodextrin glycanotransferase, domain D {Ba	97.59
d1cxla1	87	Cyclomaltodextrin glycanotransferase, domain D {Ba	97.56
d3brda1	119	DNA-binding protein LAG-1 (CSL) {Caenorhabditis el	97.53
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.46
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.4
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.27
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.2
d1imhc1	101	T-cell transcription factor NFAT5 (TONEBP) {Human	94.8
d1gjia1	100	p65 subunit of NF-kappa B (NFKB), dimerization dom	94.31
d1u36a_	104	p50 subunit of NF-kappa B transcription factor {Hu	92.7
d1my7a_	107	p65 subunit of NF-kappa B (NFKB), dimerization dom	92.65
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.55
d1a3qa1	101	p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi	92.17

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.3e-16  Score=144.71  Aligned_cols=103  Identities=21%  Similarity=0.188  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9998755789980999999909999999999889998722-478981435988619989999999739999988899989
Q 003660          560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR-DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQ  638 (805)
Q Consensus       560 Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~-D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~  638 (805)
                      +.+++.+|..|.||||+|+..|+.+++++|+..+++.+.. +..|.||||+|+..|+.+++++|+++|++++.      +
T Consensus       148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~------~  221 (255)
T d1oy3d_         148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------R  221 (255)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------C
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC------C
T ss_conf             8663310046763223332232222221000013331221334443322001233399999999987899888------7


Q ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             999996999999829799999999814523
Q 003660          639 NPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       639 d~~G~TpL~lA~~~g~~~iv~lLle~ga~~  668 (805)
                      |..|.||||+|+..++.+++++|+++||+.
T Consensus       222 d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         222 MYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             CTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             999999999999878899999999769899

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-15  Score=138.14  Aligned_cols=128  Identities=20%  Similarity=0.204  Sum_probs=64.2

Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             2124599999839918999999982-999875578998099999990999999999988999872247898143598861
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       535 ~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~  613 (805)
                      ...++++.++..++.+  +++.|++ |++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        69 ~~~~~~~~~~~~~~~~--i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_          69 AGWSPLHIAASAGRDE--IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             TCCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCC--HHHHHHCCCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             2223322222211110--16777406864675489999662698876989999999987899987689999501023213


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             998999999973999998889998999999699999982979999999981452384
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF  670 (805)
Q Consensus       614 G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~  670 (805)
                      ++..++++|+..|++++.      +|..|.|||++|+..|+.+++++|+++|++.+.
T Consensus       147 ~~~~~~~~L~~~~~~i~~------~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         147 GNLKMIHILLYYKASTNI------QDTEGNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             TCHHHHHHHHHTTCCSCC------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCHHHHHCCCCCEEEE------CCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf             874202332022320120------368887411210025849999999987799988

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.69  E-value=2.5e-16  Score=146.59  Aligned_cols=123  Identities=17%  Similarity=0.218  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHCCCCHH-HHHHHHHC-C--------CCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCC
Q ss_conf             21245999998399189-99999982-9--------998755789980999999909999999999-8899987224789
Q 003660          535 EAKDSFFELTLKSKLKE-WLLERVVE-G--------SKTTEYDVHGQGVIHLCAMLGYTWAILLFS-WSGLSLDFRDKYG  603 (805)
Q Consensus       535 ~~~t~L~~aa~~~~l~~-~lv~~Ll~-G--------a~in~~D~~G~T~LH~Aa~~G~~~~v~~LL-~~Ga~in~~D~~G  603 (805)
                      ...++...+........ ..+..+.. .        ...+..+..|+|+||+++..++...+.+++ ..+.+++.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11036788875034332222210011233222222345554466898700001223332222232223454333468999


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf             814359886199899999997399999888999899999969999998297999999998
Q 003660          604 WTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE  663 (805)
Q Consensus       604 ~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle  663 (805)
                      +||||+|+..|+.++|++|++.||+++.      +|..|.||||+|+.+|+.+++++|++
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin~------~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             9899999985989999999987699988------69999999999998598999999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-15  Score=138.54  Aligned_cols=125  Identities=19%  Similarity=0.175  Sum_probs=115.7

Q ss_pred             CCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             999632124599999839918999999982-9998755789980999999909999999999889998722478981435
Q 003660          530 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH  608 (805)
Q Consensus       530 ~~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh  608 (805)
                      ......+.+|||.|+..++.+  ++++|++ |++++..|..|.|+||+|+..++..+++.|+..|++++.+|..|+||||
T Consensus        97 ~~~d~~g~tpL~~A~~~~~~e--~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~  174 (223)
T d1uoha_          97 NAVNQNGCTPLHYAASKNRHE--IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH  174 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             EEECCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCEEC
T ss_conf             754899996626988769899--999999878999876899995010232138742023320223201203688874112


Q ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf             9886199899999997399999888999899999969999998297999999998
Q 003660          609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE  663 (805)
Q Consensus       609 ~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle  663 (805)
                      +|+..|+.++|++|++.||+++.      +|..|.||+|+|. .|+.+++++|++
T Consensus       175 ~Aa~~g~~~~v~~LL~~Gad~~~------~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         175 LACDEERVEEAKLLVSQGASIYI------ENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCC------CCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHH-CCCHHHHHCCCC
T ss_conf             10025849999999987799988------7999999999987-789999830047

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.2e-15  Score=136.64  Aligned_cols=124  Identities=20%  Similarity=0.200  Sum_probs=108.5

Q ss_pred             CHHHHHHHCCCCHHHHHHHHHCCCCCCCC------CCCCCHHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             45999998399189999999829998755------78998099999990---9999999999889998722478981435
Q 003660          538 DSFFELTLKSKLKEWLLERVVEGSKTTEY------DVHGQGVIHLCAML---GYTWAILLFSWSGLSLDFRDKYGWTALH  608 (805)
Q Consensus       538 t~L~~aa~~~~l~~~lv~~Ll~Ga~in~~------D~~G~T~LH~Aa~~---G~~~~v~~LL~~Ga~in~~D~~G~TpLh  608 (805)
                      ..|++|+..+++.. +.+.+.+|++++..      +..|+||||+|+..   |+.+++++|+..|+++|.+|..|+||||
T Consensus         8 ~~L~~Av~~~dl~~-l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFG-LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHH-HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHCCHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf             99999999588999-99999869986777775457899982699999832899899999999749973331312101000


Q ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             988619989999999739999988899989999996999999829799999999814523
Q 003660          609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       609 ~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~  668 (805)
                      +||..|+.+++++|+++|++++.      +|..|.||+|+|+..|+.+++++|++.+...
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEI------ANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             11112333322122135755024------4789999999999939999999999938897

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=6.6e-15  Score=134.98  Aligned_cols=67  Identities=25%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             4789814359886199899999997399999888999899999969999998297999999998145238444
Q 003660          600 DKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       600 D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~  672 (805)
                      +..|.||||+|+..|+.++++.|++.|++++.      ++..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~------~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d  262 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHCCCCCCEECCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf             67898730488876995441013441011242------12579889999998598999999998799998868

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-15  Score=135.84  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=115.8

Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             632124599999839918999999982-9998755789980999999909999999999889998722478981435988
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa  611 (805)
                      ...+.++++.++..++..  +++.|++ |++++..+..+.|+||.++..+..++++.++..|+++|.+|..|.||||+|+
T Consensus       261 ~~~g~~~l~~a~~~~~~~--i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~  338 (408)
T d1n11a_         261 NKSGLTPLHLVAQEGHVP--VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA  338 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHH--HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             478997334543028489--999999779965621023445302210058621355301333322346899999999999


Q ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Q ss_conf             61998999999973999998889998999999699999982979999999981
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      ..|+.++|++|+++||++++      +|..|.||||+|+.+|+.+++++|..-
T Consensus       339 ~~g~~~iv~~Ll~~GAd~n~------~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         339 QQGHTDIVTLLLKNGASPNE------VSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             HTTCHHHHHHHHHTTCCSCC------CCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             86889999999987889988------799998999999983999999999998

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.9e-15  Score=134.37  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=124.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             999632124599999839918999999982-9998755789980999999909999999999889998722478981435
Q 003660          530 RTSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALH  608 (805)
Q Consensus       530 ~~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh  608 (805)
                      ......+.++++.++..+...  +++.+.. +...+..+..|.|+||.|+..++.+++++|++.|++++..+..+.||||
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH  302 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCHH--HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             124778999999999808676--754420022111112478997334543028489999999779965621023445302


Q ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             988619989999999739999988899989999996999999829799999999814523844444
Q 003660          609 WAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       609 ~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~  674 (805)
                      .++..++..+++.+++.|++++.      +|..|.||||+|+..|+.+++++|+++|++.+..+..
T Consensus       303 ~~~~~~~~~~~~~ll~~g~~in~------~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~  362 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  362 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             HHCCCCCCEEEEEECCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             21005862135530133332234------6899999999999868899999999878899887999

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=140.89  Aligned_cols=121  Identities=21%  Similarity=0.296  Sum_probs=110.1

Q ss_pred             CHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf             4599999839918999999982-999875578998099999990999999999988999872247898143598861998
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~  616 (805)
                      +.|+.|+..|+++  +++.|++ |+++|.+|..|+||||+|+..|+.+++++|+..|++++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~--~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFD--LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHH--HHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             9999999939999--99999986997561002111111222222222222222222222222123676422232102688


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHHCC
Q ss_conf             999999973999998889998999999699999--9829799999999814
Q 003660          617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIA--SKKGFDGLAAFLSEQA  665 (805)
Q Consensus       617 ~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA--~~~g~~~iv~lLle~g  665 (805)
                      +++++|+++||+++..+     +..+.||++++  ...|+.+++++|+..+
T Consensus        81 ~~v~~Ll~~ga~v~~~~-----~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMT-----YSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCC-----SSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99999998699866466-----89998899999999868299999998678

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=141.55  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHC
Q ss_conf             124599999839918999999982-999875578998099999990999999999988999872247898-143598861
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGW-TALHWAAYY  613 (805)
Q Consensus       536 ~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~-TpLh~Aa~~  613 (805)
                      ..+.||.|+..|+++  +++.|++ |+++|..|..|.|+||+|+ .|+.+++++|+..|++++.+|..|. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~--~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVE--EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHH--HHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             705999999877999--999999859741332221222222222-22222222122222222222222222222222232


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Q ss_conf             998999999973999998889998999999699999982979999999981
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       614 G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      |+.+++++|++.|++++.      +|..|.||+++|+.+|+.+++++|+..
T Consensus        80 g~~~~v~~Ll~~ga~~~~------~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDV------RDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             CCCCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHC
T ss_conf             222222222122222332------457898999999986879999999956

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.2e-14  Score=132.73  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=103.6

Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             632124599999839918999999982-9998755789980999999909999999999889998722478981435988
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa  611 (805)
                      ...|.|+||.++..++..  ++..+.. ....+..+..+.+++|.++...+.+.++.++..|++++.+|..|+||||+|+
T Consensus        31 ~~~g~t~L~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~  108 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFS--TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT  108 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             447875333432322222--222222222222212222333232222331101221222468761232246734777664


Q ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             61998999999973999998889998999999699999982979999999
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL  661 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lL  661 (805)
                      ..|+.+++++|+++|++++.      +|..|.||+++|+.+|+.+++++|
T Consensus       109 ~~g~~~iv~~ll~~gad~~~------~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         109 EHNHQEVVELLIKYGADVHT------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HCCHHHEEEECCCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHC
T ss_conf             30222412311434467726------689899999999985999999867

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.5e-14  Score=126.86  Aligned_cols=132  Identities=17%  Similarity=0.206  Sum_probs=117.2

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHCC----CHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             32124599999839918999999982--9998755789980999999909----99999999988999872247898143
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLG----YTWAILLFSWSGLSLDFRDKYGWTAL  607 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~--Ga~in~~D~~G~T~LH~Aa~~G----~~~~v~~LL~~Ga~in~~D~~G~TpL  607 (805)
                      ..+.++|+.|+..++..  +++.|++  |++++..+..|.++++.+...+    ...+++.|++.|++++.+|..|.|||
T Consensus       146 ~~g~t~L~~A~~~~~~~--~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         146 KGGATALMDAAEKGHVE--VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHH--HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCCHHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             46856999999868999--9999984569894554678983322332234301799999999977999886689999824


Q ss_pred             HHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             59886199899999997-3999998889998999999699999982979999999981452384444
Q 003660          608 HWAAYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       608 h~Aa~~G~~~iV~~LL~-~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~  673 (805)
                      |+|+..|+.+++++||+ .|++++.      +|..|.||||+|+..|+.+++++|+++||+.+.+++
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~------~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CHHHHCCCHHHHHHHHHCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             1122138699999999808999868------799998999999985979999999987989986017

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=5.1e-14  Score=127.72  Aligned_cols=125  Identities=24%  Similarity=0.293  Sum_probs=109.9

Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHH
Q ss_conf             632124599999839918999999982-9998755789980999999909999999999889-99872247898143598
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSG-LSLDFRDKYGWTALHWA  610 (805)
Q Consensus       533 ~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~G-a~in~~D~~G~TpLh~A  610 (805)
                      ...+.++++.++..++..  ++..|+. |.+.+..|..|.|+||+|+..|+.++++.|+..| .+++.+|..|+||||+|
T Consensus       102 ~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A  179 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFE--VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA  179 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHH--HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHH--HHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             223344332212320034--322221100232124788997350232124533233332222222223566667810221


Q ss_pred             HHCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             86199899999997-39999988899989999996999999829799999999814523
Q 003660          611 AYYGREKMVVDLLS-AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       611 a~~G~~~iV~~LL~-~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~  668 (805)
                      +..|+.++|++|++ .|++++.      +|..|.||||+|+.   .+++++|+++|++.
T Consensus       180 ~~~~~~~~v~~Ll~~~gad~~~------~d~~g~t~l~~A~~---~~~~~~Ll~~g~d~  229 (229)
T d1ixva_         180 LAEGHGDAAVLLVEKYGAEYDL------VDNKGAKAEDVALN---EQVKKFFLNNVVDA  229 (229)
T ss_dssp             HHTTCHHHHHHHHHHHCCCSCC------CCTTSCCTGGGCSC---HHHHHHHHHHCCCC
T ss_pred             CCCCCHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHH---HHHHHHHHHCCCCC
T ss_conf             0125199999999965999888------58999999999846---78999999769999

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=1e-13  Score=125.26  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             2124599999839918999999982-999875578998099999990999999999988999872247898143598861
Q 003660          535 EAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       535 ~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~  613 (805)
                      .+.+..+.+.......  +.+.|.. +++++..+..|.|+||+++..+...++..++..+++++.+|..|.||||+|+..
T Consensus        89 ~~~~~~~~~~~~~~~~--~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~  166 (209)
T d1ot8a_          89 DGTTPLILAARLAIEG--MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE  166 (209)
T ss_dssp             TCCCHHHHHHHTTCTT--HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCHH--HHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf             2333222222221012--35555310146555577999823000036863145320122223454434445521121032


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf             998999999973999998889998999999699999982979999999
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL  661 (805)
Q Consensus       614 G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lL  661 (805)
                      |+.++|++|+++||+++.      +|..|.||||+|+.+|+.+++++|
T Consensus       167 g~~~~v~~Ll~~gad~n~------~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         167 GSYEASKALLDNFANREI------TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHC
T ss_conf             499999999987999988------689999999999986879899643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-13  Score=122.30  Aligned_cols=115  Identities=16%  Similarity=0.098  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             124599999839918999999982-99987-5578998099999990999999999988999872247898143598861
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTT-EYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYY  613 (805)
Q Consensus       536 ~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in-~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~  613 (805)
                      ...+++.........  ....+.. ..+.. ..+..|.++||.|+..+...+++.++..|.+++.+|..|.||||+|+..
T Consensus       110 ~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  187 (228)
T d1k1aa_         110 GLTALHVAVNTECQE--TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  187 (228)
T ss_dssp             SCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCH--HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
T ss_conf             222222222222100--134430012332222100025578898875100234432220223222123686168999985


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf             998999999973999998889998999999699999982979999
Q 003660          614 GREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA  658 (805)
Q Consensus       614 G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv  658 (805)
                      |+.+++++|+++||+++.      +|..|.||||+|+.+|+.+++
T Consensus       188 g~~~~v~~Ll~~Gad~n~------~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         188 GLLPLVRTLVRSGADSSL------KNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTC------CCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCCCCC
T ss_conf             879999999987899988------789999999999868770353

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-14  Score=126.57  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             32124599999839918999999982-99987557899809999999099999999998899987224789814359886
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY  612 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~  612 (805)
                      .++.||||.|+ .++.+  ++++|++ |++++..+..|.++|+.++..++...+..|+..+.+++..|..|.+|||+|+.
T Consensus        32 ~~g~TpL~~A~-~~~~e--i~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~  108 (156)
T d1ihba_          32 GFGRTALQVMK-LGNPE--IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK  108 (156)
T ss_dssp             TTSCCHHHHCC-SSCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCCCCCC-CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             74453212222-22222--2222222222221212357532223322222222222211222222356443211223333


Q ss_pred             CCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             199899999997399-99988899989999996999999829799999999814
Q 003660          613 YGREKMVVDLLSAGA-KPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQA  665 (805)
Q Consensus       613 ~G~~~iV~~LL~~GA-~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~g  665 (805)
                      .++.+++++|++.++ +.+.      +|..|.||||+|+..++.+++++|+++|
T Consensus       109 ~~~~~~~~~Ll~~~~~~~~~------~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         109 EGHLRVVEFLVKHTASNVGH------RNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHHHHHHHHSCCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf             22122222222122011224------5899989999999839899999999667

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=8.5e-16  Score=142.27  Aligned_cols=107  Identities=24%  Similarity=0.278  Sum_probs=99.2

Q ss_pred             CCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             24599999839918999999982-99987557899809999999099999999998899987224789814359886199
Q 003660          537 KDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGR  615 (805)
Q Consensus       537 ~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~  615 (805)
                      .+||+.|+..|+.+  +++.|++ |++++..|..|+||||+|+..|+.+++++|+..|+++|.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~--~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLD--EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHH--HHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             CHHHHHHHHCCCHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCC
T ss_conf             72899999877999--9999998420122322222222222222222222222334320233101233210223320473


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             899999997399999888999899999969999998
Q 003660          616 EKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASK  651 (805)
Q Consensus       616 ~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~  651 (805)
                      .+++++|+++|++++.      +|..|.||+|+|..
T Consensus        81 ~~~v~~Ll~~Gad~~~------~d~~G~t~l~~a~~  110 (118)
T d1myoa_          81 VSCVKLLLSKGADKTV------KGPDGLTALEATDN  110 (118)
T ss_dssp             CHHHHHHHTTCCCSSS------SSSSTCCCCCTCSS
T ss_pred             HHHHHHHHCCCCCCEE------ECCCCCCHHHHHHH
T ss_conf             2432433102000000------38999999999868

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-13  Score=124.06  Aligned_cols=122  Identities=18%  Similarity=0.238  Sum_probs=108.8

Q ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             632124599999839918999999982-9998755789980999999909999999999889998722478981435988
Q 003660          533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA  611 (805)
Q Consensus       533 ~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa  611 (805)
                      ...+.+||+.|+ .++..  ++..|+. +.+++..+..|.++|++++..++.++++.++..|+++|.+|..|+||||+||
T Consensus        33 d~~g~t~L~~A~-~~~~~--~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~  109 (156)
T d1bd8a_          33 NRFGKTALQVMM-FGSTA--IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV  109 (156)
T ss_dssp             CTTSCCHHHHSC-TTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCC-CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             899984133432-22222--222222222222222222222222222222222222222221221123677872221222


Q ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Q ss_conf             61998999999973999998889998999999699999982979999999981
Q 003660          612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQ  664 (805)
Q Consensus       612 ~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~  664 (805)
                      ..|+.+++++|+ .|++++.      +|..|.||+|+|+..|+.+++++|+++
T Consensus       110 ~~~~~~i~~~L~-~~~~~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         110 QEGHTAVVSFLA-AESDLHR------RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHTCHHHHHHHH-TTSCTTC------CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCCCCCCCC-CCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             233222211112-2256646------689999999999985989999999966

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.53  E-value=2.9e-15  Score=137.86  Aligned_cols=133  Identities=18%  Similarity=0.209  Sum_probs=76.7

Q ss_pred             CCCCHHHHHHHCCCCH--HHH----HHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             2124599999839918--999----999982-999875578998099999990999999999988999872247898143
Q 003660          535 EAKDSFFELTLKSKLK--EWL----LERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL  607 (805)
Q Consensus       535 ~~~t~L~~aa~~~~l~--~~l----v~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpL  607 (805)
                      .+.|+||.|+..++.+  +.+    .+.+++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99669999998689999999996523679876997645478888510034333333333333223222332222222222


Q ss_pred             HHHHHCCCHHHHHHHHH---------------------------------------------------------------
Q ss_conf             59886199899999997---------------------------------------------------------------
Q 003660          608 HWAAYYGREKMVVDLLS---------------------------------------------------------------  624 (805)
Q Consensus       608 h~Aa~~G~~~iV~~LL~---------------------------------------------------------------  624 (805)
                      ++|+..++..++..+..                                                               
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             CCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             10011000012344431145422222222211036788875034332222210011233222222345554466898700


Q ss_pred             ------------------CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             ------------------3999998889998999999699999982979999999981452384444
Q 003660          625 ------------------AGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       625 ------------------~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~  673 (805)
                                        .+.+.+      .+|..|.||||+|+..|+.+++++|+++|++.+..+.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~------~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~  252 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKD------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  252 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             001223332222232223454333------4689999899999985989999999987699988699

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.8e-14  Score=127.93  Aligned_cols=126  Identities=18%  Similarity=0.202  Sum_probs=90.6

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCC------CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCC
Q ss_conf             32124599999839918999999982-9998------7557899809999999099999999998899987224-78981
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKT------TEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRD-KYGWT  605 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~i------n~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D-~~G~T  605 (805)
                      ..+.++|+.++..+...  +++.++. +...      +.....|.|+||.|+..++...+.+|+..|+.++..+ .+|+|
T Consensus        70 ~~g~t~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T  147 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLA--SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT  147 (221)
T ss_dssp             TTCCCHHHHHHHHTCHH--HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             CCCCCCCCCCCCCCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCCCCC
T ss_conf             23222222233322222--1110111013233322222223343213567755598223010013686311224467778


Q ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf             43598861998999999973999998889998999999699999982979999999981452
Q 003660          606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALV  667 (805)
Q Consensus       606 pLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~  667 (805)
                      |||+|+..|+.+++++|+++|++++.      +|..|.||+|+|+..++.+++++|.+.+..
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~gad~~~------~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCC------CCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf             43111122248988889863886456------699998999999987889999999982873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1e-13  Score=125.24  Aligned_cols=133  Identities=20%  Similarity=0.204  Sum_probs=112.7

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCC--CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             32124599999839918999999982-9998--75578998099999990999999999988999872247898143598
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKT--TEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~i--n~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~A  610 (805)
                      ..+.++++.+...+...  ++..+.. +...  ...+..+.|+++.++..++.+++..|+..|.+.+.+|..|+||||+|
T Consensus        68 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a  145 (229)
T d1ixva_          68 DSGWTPFHIACSVGNLE--VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  145 (229)
T ss_dssp             TTSCCHHHHHHHHTCHH--HHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             22222222111123323--3333222222222222322334433221232003432222110023212478899735023


Q ss_pred             HHCCCHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCC
Q ss_conf             8619989999999739-9999888999899999969999998297999999998-14523844444
Q 003660          611 AYYGREKMVVDLLSAG-AKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSE-QALVAQFNDMT  674 (805)
Q Consensus       611 a~~G~~~iV~~LL~~G-A~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle-~ga~~~~~~~~  674 (805)
                      +..|+.++++.|+..+ .+++.      +|..|.||||+|+..|+.+++++|++ .|++....+..
T Consensus       146 ~~~~~~~~~~~Ll~~~~~~in~------~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         146 ASVGSLKLIELLCGLGKSAVNW------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             HHHTCHHHHHHHHTTTCCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTT
T ss_pred             HHCCCCCCCCCCCCCCCCCCCC------CCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf             2124533233332222222223------56666781022101251999999999659998885899

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.50  E-value=6.1e-16  Score=143.45  Aligned_cols=133  Identities=11%  Similarity=0.001  Sum_probs=111.2

Q ss_pred             CCCCCHHHHHHHCCCCHH-HHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC--CCCCHHHH
Q ss_conf             321245999998399189-99999982-999875578998099999990999999999988999872247--89814359
Q 003660          534 PEAKDSFFELTLKSKLKE-WLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK--YGWTALHW  609 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~-~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~--~G~TpLh~  609 (805)
                      ..+.++|+.|+..|+... -+++.|+. |+++|..|..|+||||+||..|+.++|++|++.|++++..+.  .|+||||+
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             78884999999859988999999998389855336899997999999878999999999869970214555699874389


Q ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             886199899999997399999888999899999969999998297999999998145238
Q 003660          610 AAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQ  669 (805)
Q Consensus       610 Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~  669 (805)
                      ||..||.++|++|++.|++.....   ..+..+.||++.|+.+||.+++++|++.|++..
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~---~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAM---IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHH---HHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf             988756799999997699420120---016899631157762488999999996899866

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=123.52  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=118.4

Q ss_pred             CCCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCC------CCCCCC
Q ss_conf             99632124599999839918999999982-99987557899809999999099999999998899987------224789
Q 003660          531 TSLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLD------FRDKYG  603 (805)
Q Consensus       531 ~s~~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in------~~D~~G  603 (805)
                      ....+|.||||.|+..++..  +++.|++ |++++..|..|.||||+++..|+.++++.|+..+....      .....|
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~--iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPE--IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHH--HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             67899995463433433222--3333222222222232232222222333222221110111013233322222223343


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             81435988619989999999739999988899989999996999999829799999999814523844444
Q 003660          604 WTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       604 ~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~  674 (805)
                      .||||+|+..|+.+++.+|+..|+..+..     .+..|.||||+|+..|+.+++++|+++|++....+..
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-----~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~  177 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQ-----EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ  177 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT
T ss_pred             CHHHHHHHHCCCHHHEEEECCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             21356775559822301001368631122-----4467778431111222489888898638864566999

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1e-12  Score=116.99  Aligned_cols=137  Identities=15%  Similarity=0.092  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCH-------HHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             32124599999839918999999982-999875578998099999990999-------9999999889998722478981
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYT-------WAILLFSWSGLSLDFRDKYGWT  605 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~-------~~v~~LL~~Ga~in~~D~~G~T  605 (805)
                      .+|.|+||.|+..++.+  ++++|++ |++++.+|..|+||||+||..++.       .+++.+   ...++.+|..|+|
T Consensus       105 ~~G~T~LH~Aa~~g~~~--~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l---~~~~~~~d~~g~t  179 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLE--LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL---YPCLILEDSMNRT  179 (301)
T ss_dssp             TTCCCHHHHHHHTTCHH--HHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH---GGGGGEECTTCCC
T ss_pred             CCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHCCCCCCC
T ss_conf             99988899999867999--999999878997767764351777742202202466699999997---6455513453277


Q ss_pred             HHHHHHHCCCH------------HHHHHHHHCCCCCCCCC-------------------------------CCCCCCCCC
Q ss_conf             43598861998------------99999997399999888-------------------------------999899999
Q 003660          606 ALHWAAYYGRE------------KMVVDLLSAGAKPNLVT-------------------------------DPTSQNPGG  642 (805)
Q Consensus       606 pLh~Aa~~G~~------------~iV~~LL~~GA~~n~~t-------------------------------dp~~~d~~G  642 (805)
                      |||+++..+..            .++..++..+.......                               .++.+|..|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             87999998375541899999899999999865872000024566404689886014889999866778860766878999


Q ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             969999998297999999998145238444440
Q 003660          643 LNAADIASKKGFDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       643 ~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~l  675 (805)
                      .||||+|+..|+.+++++|++.|++.+..+...
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G  292 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGADPFIANKSG  292 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             889999998687999999998799999989999

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=4.1e-13  Score=120.31  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=74.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99987557899809999999099999999998899987224789814359886199899999997399999888999899
Q 003660          560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN  639 (805)
Q Consensus       560 Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d  639 (805)
                      ..+....+..|.|+||+|+..|+.++++.|+..|+++|.+|..|+||||+|+..|+.++|++|+++||+++.      +|
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~------~d  262 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA------VN  262 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CC
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC------CC
T ss_conf             211002467898730488876995441013441011242125798899999985989999999987999988------68


Q ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             999969999998297999999998145
Q 003660          640 PGGLNAADIASKKGFDGLAAFLSEQAL  666 (805)
Q Consensus       640 ~~G~TpL~lA~~~g~~~iv~lLle~ga  666 (805)
                      ..|.||||+|+.    +++++|.+...
T Consensus       263 ~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         263 KVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             TTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             CCCCCHHHHHHH----HHHHHHHHHHH
T ss_conf             999999999999----89999999863

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5e-13  Score=119.63  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             80999999909999999999889998722478981435988619989999999739999988899989999996999999
Q 003660          571 QGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS  650 (805)
Q Consensus       571 ~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~  650 (805)
                      .++||.||..|+.++|+.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.      +|.+|.||||+|+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~------~d~~g~tpLh~A~   75 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC------CCTTCCCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
T ss_conf             5999999993999999999986997561002111111222222222222222222222222------1236764222321


Q ss_pred             HCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             8297999999998145238444
Q 003660          651 KKGFDGLAAFLSEQALVAQFND  672 (805)
Q Consensus       651 ~~g~~~iv~lLle~ga~~~~~~  672 (805)
                      ..|+.+++++|+++|++....+
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAMT   97 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC
T ss_conf             0268899999998699866466

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-12  Score=115.82  Aligned_cols=125  Identities=18%  Similarity=0.223  Sum_probs=111.4

Q ss_pred             CCHHHHHHHCCCCHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             24599999839918999999982--9998755789980999999909999999999889998722478981435988619
Q 003660          537 KDSFFELTLKSKLKEWLLERVVE--GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG  614 (805)
Q Consensus       537 ~t~L~~aa~~~~l~~~lv~~Ll~--Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G  614 (805)
                      .+.|+.|+..|+..  +++.|+.  +++++..|..|.||||+|+ .|+.++++.|+..+++++..+..|.+|++.++..+
T Consensus         3 g~~L~~Aa~~g~~~--~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQ--EVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHH--HHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHHCCCHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             17999999958999--9999999589998864899984133432-22222222222222222222222222222222222


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf             989999999739999988899989999996999999829799999999814523844
Q 003660          615 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFN  671 (805)
Q Consensus       615 ~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~  671 (805)
                      +.++++.+++.|++++.      +|..|.||||+|+..|+.+++++|+ .|++.+..
T Consensus        80 ~~~~~~~~l~~~~~~n~------~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~  129 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNV------PDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR  129 (156)
T ss_dssp             CHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCC
T ss_pred             CCCCCCCCCCCCCCCCC------CCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             22222222222122112------3677872221222233222211112-22566466

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=5.7e-13  Score=119.16  Aligned_cols=100  Identities=16%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             80999999909999999999889998722478981435988619989999999739999988899989999996999999
Q 003660          571 QGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIAS  650 (805)
Q Consensus       571 ~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~  650 (805)
                      .|||++|+..|+.++++.|+..|++++.+|..|+||||+|+..|+.+++++|++.|++++.      +|..|.||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~------~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA------PDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC------CSSSCSCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE------CCCCCCCCHHHHH
T ss_conf             7289999987799999999984201223222222222222222222222223343202331------0123321022332


Q ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             82979999999981452384444400
Q 003660          651 KKGFDGLAAFLSEQALVAQFNDMTLA  676 (805)
Q Consensus       651 ~~g~~~iv~lLle~ga~~~~~~~~l~  676 (805)
                      ..|+.+++++|+++|++.+..+....
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~~d~~G~  102 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTVKGPDGL  102 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSSSSSSTC
T ss_pred             HCCCHHHHHHHHCCCCCCEEECCCCC
T ss_conf             04732432433102000000389999

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-11  Score=108.54  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=49.4

Q ss_pred             HHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             9999982-99987557899809999999099999999998-899987224789814359886199899999997399999
Q 003660          553 LLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW-SGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       553 lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~-~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n  630 (805)
                      +++.|++ |++++.+|..|.||||+|+..|+.+++++|+. .|+++|.+|..|.||||+|+..|+.++|++||++||++|
T Consensus       201 i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf             99999977999886689999824112213869999999980899986879999899999998597999999998798998


Q ss_pred             C
Q ss_conf             8
Q 003660          631 L  631 (805)
Q Consensus       631 ~  631 (805)
                      +
T Consensus       281 ~  281 (285)
T d1wdya_         281 C  281 (285)
T ss_dssp             C
T ss_pred             C
T ss_conf             6

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.1e-12  Score=116.84  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=96.2

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHC--------------------
Q ss_conf             32124599999839918999999982-999875578998099999990999999999988--------------------
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWS--------------------  592 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~--------------------  592 (805)
                      ..|.||||.|+..++.+  ++++|++ |++++..|..|.||||+|+..|+.++++.|+..                    
T Consensus        43 ~~g~TpL~~A~~~g~~~--iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (255)
T d1oy3d_          43 DLGQTALHLAAILGEAS--TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (255)
T ss_dssp             TTSCCHHHHHHHHTCHH--HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCCCCCHHHHHCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC
T ss_conf             99997240687624543--2322223333322322222102333322682589999986142010122025666776522


Q ss_pred             ---------------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             ---------------------------99987224789814359886199899999997399999888999899999969
Q 003660          593 ---------------------------GLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNA  645 (805)
Q Consensus       593 ---------------------------Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~Tp  645 (805)
                                                 +.+++.+|..|+||||+|+..|+.+++++|++.+++.+..     .+..|.||
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~Tp  195 (255)
T d1oy3d_         121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTP  195 (255)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----CTTTCCCH
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC-----CCCCCCCC
T ss_conf             4306779999862030678998765328663310046763223332232222221000013331221-----33444332


Q ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             9999982979999999981452384444
Q 003660          646 ADIASKKGFDGLAAFLSEQALVAQFNDM  673 (805)
Q Consensus       646 L~lA~~~g~~~iv~lLle~ga~~~~~~~  673 (805)
                      ||+|+..|+.+++++|+++|++.+..+.
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         196 LHLAVEAQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             2001233399999999987899888799

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=2.8e-11  Score=105.36  Aligned_cols=132  Identities=18%  Similarity=0.181  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCH-----------------------------
Q ss_conf             32124599999839918999999982-999875578998099999990999-----------------------------
Q 003660          534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYT-----------------------------  583 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~-----------------------------  583 (805)
                      .+|.++||.|+..|+.+  +++.|+. |++++..+..+.++++.++..+..                             
T Consensus        21 ~~G~t~L~~A~~~g~~e--~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          21 KTGETSLHLAARFARAD--AAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHCCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99988999999839999--9999875022332222222222222222222222222222222223222222333222222


Q ss_pred             -----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf             -----999999988999872247898143598861998999999973999998889998999999699999982979999
Q 003660          584 -----WAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLA  658 (805)
Q Consensus       584 -----~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv  658 (805)
                           ...+.|+..+++++.++..|+|||++++..+...++..|+..+++++.      .|..|.||||+|+..|+.+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~------~d~~g~TpL~~A~~~g~~~~v  172 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA------QDDKDETPLFLAAREGSYEAS  172 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCC------CCCCCCCCCCHHCCCCHHHHH
T ss_conf             22101235555310146555577999823000036863145320122223454------434445521121032499999


Q ss_pred             HHHHHCCCCCCCCCC
Q ss_conf             999981452384444
Q 003660          659 AFLSEQALVAQFNDM  673 (805)
Q Consensus       659 ~lLle~ga~~~~~~~  673 (805)
                      ++|+++|++....+.
T Consensus       173 ~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         173 KALLDNFANREITDH  187 (209)
T ss_dssp             HHHHHTTCCTTCCCT
T ss_pred             HHHHHCCCCCCCCCC
T ss_conf             999987999988689

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.9e-12  Score=112.28  Aligned_cols=135  Identities=21%  Similarity=0.182  Sum_probs=111.9

Q ss_pred             CCCCCHHHHHHHCCCCH--HHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC-----------
Q ss_conf             32124599999839918--999999982-9998755789980999999909999999999889998722-----------
Q 003660          534 PEAKDSFFELTLKSKLK--EWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFR-----------  599 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~l~--~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~-----------  599 (805)
                      ++|.||||.|+..++.+  +++++.+.+ |++++.+|..|+||||+|+..|+.++++.|+..|++++..           
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98842999999839999999999989977997776689999624100013553333333222223343333222333222


Q ss_pred             ------------------------------------------------------------CCCCCCHHHHHHHCCCHHHH
Q ss_conf             ------------------------------------------------------------47898143598861998999
Q 003660          600 ------------------------------------------------------------DKYGWTALHWAAYYGREKMV  619 (805)
Q Consensus       600 ------------------------------------------------------------D~~G~TpLh~Aa~~G~~~iV  619 (805)
                                                                                  +..|.+||++|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             22345210023442045432232233332222222222222100134430012332222100025578898875100234


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999739999988899989999996999999829799999999814523844444
Q 003660          620 VDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       620 ~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~  674 (805)
                      +.+++.|...+.      +|..|.||+++|+..|+.+++++|+++|++.+..+..
T Consensus       161 ~~~~~~~~~~~~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~  209 (228)
T d1k1aa_         161 QLLLQHGANVNA------QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH  209 (228)
T ss_dssp             HHHHHTTCCTTC------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             432220223222------1236861689999858799999999878999887899

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.6e-12  Score=115.53  Aligned_cols=81  Identities=36%  Similarity=0.794  Sum_probs=74.7

Q ss_pred             EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCCCCEEEEEEEECCCCCCCC
Q ss_conf             58732898668997599997778888444888747998398210114010550266379999972699998389975441
Q 003660          367 ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKPISQ  446 (805)
Q Consensus       367 I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~n~~~~se  446 (805)
                      |++|||.||++.|||+|+|.|.+|..     ...+.|+||+..+++..++++.++|.+|||.+|.|++.|+.+++. .+.
T Consensus         2 It~isP~~G~~~GGt~V~I~G~~f~~-----~~~~~c~fG~~~~~~~~vs~~~i~C~tP~~~~G~v~v~Vs~ng~~-~s~   75 (82)
T d2cxka1           2 VTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQI-ISN   75 (82)
T ss_dssp             CCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTEE-CSC
T ss_pred             EEEECCCCEECCCCEEEEEEECCCCC-----CCEEEEEEEEEECCEEEEEEEEEEEECCCCCCEEEEEEEEECCEE-ECC
T ss_conf             93981896608999999999736664-----450799997200305997125999984753561589999989998-136


Q ss_pred             CCCCCCC
Q ss_conf             0013557
Q 003660          447 VLNFEYR  453 (805)
Q Consensus       447 ~~~FeYr  453 (805)
                      ...||||
T Consensus        76 ~~~F~Yr   82 (82)
T d2cxka1          76 SVVFEYK   82 (82)
T ss_dssp             CEEEEEC
T ss_pred             CCEEEEC
T ss_conf             7088859

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.33  E-value=1e-13  Score=125.17  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             CCCCCCCCCHHHHHHHHCCCHHHHHH---HHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             87557899809999999099999999---998899987224789814359886199899999997399999888999899
Q 003660          563 TTEYDVHGQGVIHLCAMLGYTWAILL---FSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQN  639 (805)
Q Consensus       563 in~~D~~G~T~LH~Aa~~G~~~~v~~---LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d  639 (805)
                      ++.++..|.|+||+||..|+.++++.   |+..|+++|.+|..|+||||+||..||.++|++|++.|++++...    .+
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~----~~  158 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM----IQ  158 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH----HS
T ss_pred             HHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC----CC
T ss_conf             87636788849999998599889999999983898553368999979999998789999999998699702145----55


Q ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             99996999999829799999999814523
Q 003660          640 PGGLNAADIASKKGFDGLAAFLSEQALVA  668 (805)
Q Consensus       640 ~~G~TpL~lA~~~g~~~iv~lLle~ga~~  668 (805)
                      ..|.||||+|+.+||.+++++|++.|+..
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             69987438998875679999999769942

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.2e-11  Score=108.37  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=85.9

Q ss_pred             CCCCCHHHHHHHCCC--CHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             321245999998399--18999999982-999875578998099999990999999999988999872247898143598
Q 003660          534 PEAKDSFFELTLKSK--LKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA  610 (805)
Q Consensus       534 ~~~~t~L~~aa~~~~--l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~A  610 (805)
                      ..+.++||.|+..+.  ..+ ++++|++ |+++|.+|..|+||||+||..|+.+++++|+.+|++++.+|..|+||||+|
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~~-iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSLH-IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  121 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTHH-HHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHHCCCCCHH-HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99982699999832899899-99999974997333131210100011112333322122135755024478999999999


Q ss_pred             HHCCCHHHHHHHHHCCCCCC
Q ss_conf             86199899999997399999
Q 003660          611 AYYGREKMVVDLLSAGAKPN  630 (805)
Q Consensus       611 a~~G~~~iV~~LL~~GA~~n  630 (805)
                      +..|+.+++++|++.++..-
T Consensus       122 ~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1         122 KRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHTTCHHHHHHHHHHHTTCC
T ss_pred             HHCCCHHHHHHHHHHCCCCC
T ss_conf             99399999999999388977

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-11  Score=107.36  Aligned_cols=99  Identities=19%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf             998099999990999999999988999872247898143598861998999999973999998889998999999-6999
Q 003660          569 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGL-NAAD  647 (805)
Q Consensus       569 ~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~~iV~~LL~~GA~~n~~tdp~~~d~~G~-TpL~  647 (805)
                      .+.++||+||..|+.+++++|++.|+++|.+|..|+||||+|+ .|+.+++++|++.|++++.      ++..+. ||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~------~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC------ADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC------CCTTTCCCHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC------CCCCCCCCCCC
T ss_conf             8705999999877999999999859741332221222222222-2222222212222222222------22222222222


Q ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999829799999999814523844444
Q 003660          648 IASKKGFDGLAAFLSEQALVAQFNDMT  674 (805)
Q Consensus       648 lA~~~g~~~iv~lLle~ga~~~~~~~~  674 (805)
                      +|+..|+.+++++|+++|++.+..+..
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~  101 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARLDVRDAW  101 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             222322222222221222223324578

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=5e-12  Score=111.41  Aligned_cols=86  Identities=13%  Similarity=-0.018  Sum_probs=68.0

Q ss_pred             CCCCCCC-CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH-------HHHHHHHHCCCCCCC
Q ss_conf             9998755-78998099999990999999999988999872247898143598861998-------999999973999998
Q 003660          560 GSKTTEY-DVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE-------KMVVDLLSAGAKPNL  631 (805)
Q Consensus       560 Ga~in~~-D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~-------~iV~~LL~~GA~~n~  631 (805)
                      +.++|.. |..|+||||+||..|+.++|++|++.|++++.+|..|+||||.||..++.       .++.+|.   .+...
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~  172 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLIL  172 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH---HHHHH
T ss_conf             878686868999888999998679999999998789977677643517777422022024666999999976---45551


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             88999899999969999998297
Q 003660          632 VTDPTSQNPGGLNAADIASKKGF  654 (805)
Q Consensus       632 ~tdp~~~d~~G~TpL~lA~~~g~  654 (805)
                            .|..|+||+|.++..+.
T Consensus       173 ------~d~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         173 ------EDSMNRTILHHIIITSG  189 (301)
T ss_dssp             ------ECTTCCCHHHHHHHHHT
T ss_pred             ------CCCCCCCHHHHHHHHHC
T ss_conf             ------34532778799999837

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=4.2e-10  Score=95.64  Aligned_cols=131  Identities=22%  Similarity=0.209  Sum_probs=119.3

Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             124599999839918999999982-9998755789980999999909999999999889998722478981435988619
Q 003660          536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG  614 (805)
Q Consensus       536 ~~t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G  614 (805)
                      ..+||+.|+..|+.+  +++.|++ |++++ .|..|+||||+|+..++.+++..++.........+..+.+++++++...
T Consensus         2 ~~t~L~~Aa~~g~~~--~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDD--EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHH--HHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHH--HHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             797999999878999--9999998699834-2447875333432322222222222222222212222333232222331


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9899999997399999888999899999969999998297999999998145238444440
Q 003660          615 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL  675 (805)
Q Consensus       615 ~~~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga~~~~~~~~l  675 (805)
                      +.++++.|+..|++.+.      ++..|.|||++|+..|+.+++++|++.|++.+..+...
T Consensus        79 ~~~~~~~l~~~~~~~~~------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g  133 (153)
T d1awcb_          79 HANIVEVLLKHGADVNA------KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             CHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCEEEECCCCCCCCCCC------CCCCCCHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCC
T ss_conf             10122122246876123------22467347776643022241231143446772668989

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.9e-10  Score=95.97  Aligned_cols=120  Identities=19%  Similarity=0.279  Sum_probs=114.4

Q ss_pred             CHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf             4599999839918999999982-999875578998099999990999999999988999872247898143598861998
Q 003660          538 DSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRE  616 (805)
Q Consensus       538 t~L~~aa~~~~l~~~lv~~Ll~-Ga~in~~D~~G~T~LH~Aa~~G~~~~v~~LL~~Ga~in~~D~~G~TpLh~Aa~~G~~  616 (805)
                      ++||.|+..++.+  +++.|++ |++++.+|..|.||||+|+ .|+.++++.|+..|++++.++..|.++|++++..++.
T Consensus         3 ~~Lh~Aa~~g~~~--~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLE--QLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHH--HHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8999999867999--999999878796746774453212222-2222222222222222212123575322233222222


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             99999997399999888999899999969999998297999999998145
Q 003660          617 KMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQAL  666 (805)
Q Consensus       617 ~iV~~LL~~GA~~n~~tdp~~~d~~G~TpL~lA~~~g~~~iv~lLle~ga  666 (805)
                      .++..|+..+.+++.      .+..|.+|+++|+..++.+++++|++++.
T Consensus        80 ~~~~~l~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          80 DTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             222222112222223------56443211223333221222222221220

>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.97  E-value=1.3e-05  Score=58.95  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             40458732898668997599997778888444888747998398210114010550266379999972699998389975
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKP  443 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~n~~~  443 (805)
                      -..|+.|+|..|+  +|++|+|.|.+|.+      ....|.||+.++....|.+..++|.+|++.+|.+++.|..++.. 
T Consensus         3 ~P~I~si~P~~g~--~Gt~VtI~G~~F~~------~~~~v~~g~~~~~v~~~s~t~I~c~vP~~~~g~~~v~V~~~g~~-   73 (81)
T d1qhoa1           3 APQIGSVAPNMGI--PGNVVTIDGKGFGT------TQGTVTFGGVTATVKSWTSNRIEVYVPNMAAGLTDVKVTAGGVS-   73 (81)
T ss_dssp             SCEEEEEESSEEC--TTCEEEEEEECCCS------SCCEEEETTEECCEEEECSSEEEEECCSCCCEEEEEEEEETTEE-
T ss_pred             CCEEEEEECCCCC--CCCEEEEEEECCCC------CCEEEEECCEEEEEEEECCCEEEEEECCCCCCEEEEEEEECCEE-
T ss_conf             9999389799779--99899999989989------97589979988899997899799990799993489999979998-


Q ss_pred             CCCCCCCC
Q ss_conf             44100135
Q 003660          444 ISQVLNFE  451 (805)
Q Consensus       444 ~se~~~Fe  451 (805)
                       +....|+
T Consensus        74 -s~~~~F~   80 (81)
T d1qhoa1          74 -SNLYSYN   80 (81)
T ss_dssp             -CCCEEEE
T ss_pred             -CCCEEEE
T ss_conf             -5668769

>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT1 (NFATC2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.1e-05  Score=59.62  Aligned_cols=84  Identities=13%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEE-EC-----------CCCCEEEECCCC-C-
Q ss_conf             640458732898668997599997778888444888747998398210114-01-----------055026637999-9-
Q 003660          363 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAE-FV-----------QAGVYRCFLPPH-S-  428 (805)
Q Consensus       363 ~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~-~i-----------~~gvLrC~~Pph-~-  428 (805)
                      ++..|+++||..|+..||++|+|+|..|..       ...|+||+...... +|           +...|+|.+||- . 
T Consensus         1 ~~P~I~~~s~~sgpv~GG~ev~llg~~f~~-------~~~V~F~e~~~~~~~~We~~~~~~~~v~~q~aIv~~tPpy~~~   73 (103)
T d1p7hl1           1 ELPMVERQDTDSCLVYGGQQMILTGQNFTS-------ESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNK   73 (103)
T ss_dssp             CCCEEEEESCSEEETTCCCEEEEEEESCCS-------SCEEEEEEECSSSCEEEEEEECBCTTTCBTTEEEEECCCCSCT
T ss_pred             CCCEEEEECCCCCCCCCCCEEEEEECCCCC-------CCEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCC
T ss_conf             998699986997304898389999666389-------8789987107886287899631381016100799977998799


Q ss_pred             --CCEEEEEE--EECCCCCCCCCCCCCCCC
Q ss_conf             --97269999--838997544100135579
Q 003660          429 --PGLFLLYM--SLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       429 --~G~V~l~v--~~~n~~~~se~~~FeYr~  454 (805)
                        .+.|.++|  ..+++ .+|+...|+|.+
T Consensus        74 ~i~~pV~V~v~l~~s~~-~~S~~~~FtY~P  102 (103)
T d1p7hl1          74 HIRTPVKVNFYVINGKR-KRSQPQHFTYHP  102 (103)
T ss_dssp             TCSSCEEEEEEEEETTT-EECCCEEEEEEC
T ss_pred             CCCCCEEEEEEEECCCC-CCCCCCCEEEEE
T ss_conf             87525799999982998-306987879960

>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Other IPT/TIG domains
domain: Exocyst complex component Sec5, Ral-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=2.5e-05  Score=56.59  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=69.1

Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCC-EEEECCCEE--CCEEECCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf             64045873289866899759999777888844488874-799839821--011401055026637999997269999838
Q 003660          363 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSN-MFCVCGEVR--VPAEFVQAGVYRCFLPPHSPGLFLLYMSLD  439 (805)
Q Consensus       363 ~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~-~~c~FGdv~--Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~  439 (805)
                      +...|+.|+|..|.  |||.|+|.|.+|...    ... ..+.+|..+  +....+.+..++|.+||+.+|..++.|...
T Consensus         3 ~PP~ItsisP~~G~--gGT~VTI~G~~f~~~----~s~~~~V~v~g~~~~~~~~~~s~~~I~c~tp~~~~g~~~v~v~~~   76 (92)
T d1uadc_           3 QPPLVTGISPNEGI--PWTKVTIRGENLGTG----PTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTK   76 (92)
T ss_dssp             CCCEEEEEESSEES--TTCEEEEEEECSCSS----GGGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEET
T ss_pred             CCCEEEEEECCCCC--CCCEEEEEEECCCCC----CCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEC
T ss_conf             89997699599789--995999999787898----775348999064358876027861999976898885218999992


Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             9975441001355798
Q 003660          440 GHKPISQVLNFEYRSP  455 (805)
Q Consensus       440 n~~~~se~~~FeYr~~  455 (805)
                      ++...+....|+|.+|
T Consensus        77 ~g~~~ts~~~F~y~~P   92 (92)
T d1uadc_          77 SGGRGTSTVSFKLLKP   92 (92)
T ss_dssp             TTEECEESSCCEECCC
T ss_pred             CCCEEEECCEEEEECC
T ss_conf             9986998188997295

>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.63  E-value=0.00016  Score=49.91  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=65.1

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             40458732898668997599997778888444888747998398210114010550266379999972699998389975
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKP  443 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~n~~~  443 (805)
                      ...|+.++|..|..  |++|+|.|.+|..     .. -.|.||+.++....|.+..++|.+|++.+|.+++.|...++..
T Consensus         3 tP~I~sisP~~g~~--Gt~VtI~G~~F~~-----~~-~~V~ig~~~~~v~~~s~t~I~~~vP~~~~g~~~v~V~~~~g~~   74 (83)
T d3bmva1           3 SPLIGHVGPTMTKA--GQTITIDGRGFGT-----TS-GQVLFGSTAGTIVSWDDTEVKVKVPSVTPGKYNISLKTSSGAT   74 (83)
T ss_dssp             CCEEEEEECSEECT--TCEEEEEEECCCS-----SC-CEEEETTEECEEEEECSSEEEEECCCCCSEEEEEEEECTTCCB
T ss_pred             CCEEEEEECCCCCC--CCEEEEEECCCCC-----CC-CEEEECCEEEEEEEECCCEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf             99995896998799--9799999637888-----86-3589999999999979999999938999804889999599869


Q ss_pred             CCCCCCCC
Q ss_conf             44100135
Q 003660          444 ISQVLNFE  451 (805)
Q Consensus       444 ~se~~~Fe  451 (805)
                      ......|+
T Consensus        75 s~~~~~F~   82 (83)
T d3bmva1          75 SNTYNNIN   82 (83)
T ss_dssp             CCCEEEEE
T ss_pred             ECCCCCEE
T ss_conf             12315459

>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.59  E-value=0.00021  Score=49.01  Aligned_cols=80  Identities=15%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             40458732898668997599997778888444888747998398210114010550266379999972699998389975
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGHKP  443 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~~G~V~l~v~~~n~~~  443 (805)
                      ...|+.++|.-|.  +|++|+|.|.+|..     .. -.+.||+.++....|.+..++|.+|++.+|.+++.|...++..
T Consensus         3 tP~I~sisP~~g~--~Gt~VtI~G~~F~~-----~~-~~V~ig~~~~~v~~~s~t~I~~~vP~~~~G~~~V~V~~~~g~~   74 (83)
T d1cyga1           3 TPIIGHVGPMMGQ--VGHQVTIDGEGFGT-----NT-GTVKFGTTAANVVSWSNNQIVVAVPNVSPGKYNITVQSSSGQT   74 (83)
T ss_dssp             SCEEEEEECSEEC--TTCEEEEEEECCCS-----SC-CEEEETTEECCEEECCSSEEEEECCSCCSEEEEEEEECTTSCB
T ss_pred             CCEEEEEECCCCC--CCCEEEEEECCCCC-----CC-CEEEECCEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCE
T ss_conf             8889899899789--99799999744479-----86-3899999898899967999999996788950999999899838


Q ss_pred             CCCCCCCC
Q ss_conf             44100135
Q 003660          444 ISQVLNFE  451 (805)
Q Consensus       444 ~se~~~Fe  451 (805)
                      ......|+
T Consensus        75 s~~~~~F~   82 (83)
T d1cyga1          75 SAAYDNFE   82 (83)
T ss_dssp             CCCEEEEE
T ss_pred             EECCCCEE
T ss_conf             81116559

>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus circulans, different strains [TaxId: 1397]

Probab=97.56  E-value=0.00011  Score=51.21  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEE-CCEE--ECCCCCEEEECCCCCCCEEEEEEEECC
Q ss_conf             4045873289866899759999777888844488874799839821-0114--010550266379999972699998389
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVR-VPAE--FVQAGVYRCFLPPHSPGLFLLYMSLDG  440 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~-Vpa~--~i~~gvLrC~~Pph~~G~V~l~v~~~n  440 (805)
                      ...|+.|+|.+|+  +|++|+|.|.+|...      .-.+.||.+. .+++  .|.+..++|.+|++.+|.+++.|...+
T Consensus         2 tP~I~sisP~~g~--~Gt~VTI~G~~F~~~------~~~V~v~~~~~~~~~v~s~s~t~I~~~vP~~~~g~~~v~V~~~~   73 (87)
T d1cxla1           2 TPTIGHVGPMMAK--PGVTITIDGRGFGSS------KGTVYFGTTAVSGADITSWEDTQIKVKIPAVAGGNYNIKVANAA   73 (87)
T ss_dssp             SCEEEEEECSEEC--TTCEEEEEEECCCSS------CCEEEETTEEEEGGGEEEEETTEEEEECCCCCSEEEEEEEECTT
T ss_pred             CCEEEEEECCCCC--CCCEEEEEEECCCCC------CCEEEEEEECCCEEEEEEECCCEEEEEECCCCCCEEEEEEEECC
T ss_conf             8999798489789--998999998997899------85599961357279999968999999978999820799999699


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             9754410013557
Q 003660          441 HKPISQVLNFEYR  453 (805)
Q Consensus       441 ~~~~se~~~FeYr  453 (805)
                      +........|+|.
T Consensus        74 g~~s~~~~~F~~l   86 (87)
T d1cxla1          74 GTASNVYDNFEVL   86 (87)
T ss_dssp             CCBCCCEEEEEEC
T ss_pred             CCEEEECCCEEEE
T ss_conf             9378003766990

>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.53  E-value=0.00012  Score=51.01  Aligned_cols=82  Identities=18%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCEECCEEECCCCCEEEECCCCC---C----------
Q ss_conf             640458732898668997599997778888444888747998398210114010550266379999---9----------
Q 003660          363 HLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHS---P----------  429 (805)
Q Consensus       363 ~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGdv~Vpa~~i~~gvLrC~~Pph~---~----------  429 (805)
                      ...-|+.+.|+-|...|++||+  |.+|..       ++.|+|||+++.+.+|.+.+|.|.+||..   .          
T Consensus        20 PvPvV~~L~pngG~~~~~lEvt--G~nF~~-------~L~V~FGd~~A~T~~r~~esLvC~vP~~s~~~~~~~~w~~~~~   90 (119)
T d3brda1          20 PCPVVGSLEVDGHGEASRVELH--GRDFKP-------NLKVWFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNR   90 (119)
T ss_dssp             SCCEEEEEEEECSGGGCEEEEE--EECCCT-------TEEEEETTEEECEEEEETTEEEEECCCHHHHSCTTTHHHHBCT
T ss_pred             CCCEEEEEECCCCCCCCEEEEE--CCCCCC-------CCEEEECCCCCEEEEEECCEEEEECCCHHHHCCCCCCEEEEEC
T ss_conf             8865458702789853279998--867888-------8689989915336998178789988986882555543378505


Q ss_pred             ----CEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             ----726999983899754410013557
Q 003660          430 ----GLFLLYMSLDGHKPISQVLNFEYR  453 (805)
Q Consensus       430 ----G~V~l~v~~~n~~~~se~~~FeYr  453 (805)
                          ..||+.+.-+.+..-+--..|+|+
T Consensus        91 ~~~~v~vPisLVR~DGvIy~t~~tfty~  118 (119)
T d3brda1          91 TTGDVEVPISLVRDDGVVYSSGLTFSYK  118 (119)
T ss_dssp             TTCCBEEEEEEEETTSEEEEEEEEEETT
T ss_pred             CCCCCEEEEEEEECCCEEEECCCEEEEC
T ss_conf             7876032289994288696167248823

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.46  E-value=0.00013  Score=50.76  Aligned_cols=42  Identities=24%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC
Q ss_conf             999999999999975549999999999---999999998662104
Q 003660          763 VRKKMAAAARIQHRFRSWKVRKEFLNM---RRQAIKIQVILLCIV  804 (805)
Q Consensus       763 ~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~---r~~~v~IQ~~~Rg~~  804 (805)
                      ......+|+.||+.+|||+.||+|+++   |+++++||++||||+
T Consensus       731 ~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~  775 (794)
T d2mysa2         731 DDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFM  775 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999999

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.40  E-value=0.00017  Score=49.77  Aligned_cols=42  Identities=14%  Similarity=0.149  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC
Q ss_conf             99999999999997554999999999999---9999998662104
Q 003660          763 VRKKMAAAARIQHRFRSWKVRKEFLNMRR---QAIKIQVILLCIV  804 (805)
Q Consensus       763 ~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~---~~v~IQ~~~Rg~~  804 (805)
                      .....++|+.||+.+|||+.||+|+++|.   ++++||+++|||+
T Consensus       727 ~~~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~  771 (789)
T d1kk8a2         727 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWL  771 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999999999

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.27  E-value=0.01  Score=35.21  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             437899868--999999999985656788888863189488999999999898987667899999999999997554999
Q 003660          705 DTLSAYRTA--AEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKV  782 (805)
Q Consensus       705 dsLaA~r~A--a~aaa~IQ~afR~~s~r~R~q~~~~~~~~~~a~~l~Aa~~iq~~~r~~~~~~~~~AAv~IQ~~~Rg~~~  782 (805)
                      +.|...|+.  .++|..||+.+|++..|++|++++                           ....|++.||+.+|+|..
T Consensus       720 ~~LE~~r~~~l~~~~~~IQ~~~R~~~~Rk~y~k~r---------------------------~~~~ai~~iQ~~~R~~~~  772 (789)
T d1kk8a2         720 GNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQ---------------------------DQRIGLSVIQRNIRKWLV  772 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999---------------------------999999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 003660          783 RKEFLNMR  790 (805)
Q Consensus       783 Rk~f~~~r  790 (805)
                      ||+|..+|
T Consensus       773 rr~~~~~~  780 (789)
T d1kk8a2         773 LRNWQWWK  780 (789)
T ss_dssp             HHTCHHHH
T ss_pred             HCCCHHHH
T ss_conf             80369999

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.20  E-value=0.01  Score=35.24  Aligned_cols=65  Identities=26%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43789986--8999999999985656788888863189488999999999898987667899999999999997554999
Q 003660          705 DTLSAYRT--AAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKMAAAARIQHRFRSWKV  782 (805)
Q Consensus       705 dsLaA~r~--Aa~aaa~IQ~afR~~s~r~R~q~~~~~~~~~~a~~l~Aa~~iq~~~r~~~~~~~~~AAv~IQ~~~Rg~~~  782 (805)
                      +.|...|+  -..+|..||+.+|++..|+|++...                           ..+.|++.||+.+|||+.
T Consensus       724 ~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~---------------------------~~r~a~~~IQ~~~R~~~~  776 (794)
T d2mysa2         724 GLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMV---------------------------ERRESIFCIQYNVRSFMN  776 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999---------------------------999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q 003660          783 RKEFLNMRRQAIKIQ  797 (805)
Q Consensus       783 Rk~f~~~r~~~v~IQ  797 (805)
                      ||+|..+|- -++|+
T Consensus       777 ~r~~~~~rl-~~ki~  790 (794)
T d2mysa2         777 VKHWPWMKL-FFKIK  790 (794)
T ss_dssp             HTTCHHHHH-HHHHT
T ss_pred             HHCCHHHHH-HHHHH
T ss_conf             823699999-99866

>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: T-cell transcription factor NFAT5 (TONEBP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.06  Score=28.94  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=59.4

Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC----------EECCEEECCCCCEEEECCCC------
Q ss_conf             40458732898668997599997778888444888747998398----------21011401055026637999------
Q 003660          364 LFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGE----------VRVPAEFVQAGVYRCFLPPH------  427 (805)
Q Consensus       364 ~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FGd----------v~Vpa~~i~~gvLrC~~Pph------  427 (805)
                      +..|.++|..-|++.||.+|.|+|..+...     . -.+-|-+          ..+..+.++...++|-+||=      
T Consensus         1 ~P~I~r~s~~s~~v~GG~Ev~lL~ekv~kd-----d-~v~F~e~~~~~~~WE~~~~f~~~~vh~qaiv~ktPpY~~~~I~   74 (101)
T d1imhc1           1 VPEILKKSLHSCSVKGEEEVFLIGKNFLKG-----T-KVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHIT   74 (101)
T ss_dssp             CCEEEEESCCEEETTCCCEEEEEEECCCTT-----C-EEEEESSSCTTCSCEEEECBCGGGCCSSEEEEECCCCSCTTCS
T ss_pred             CCEEEEECCCCEEECCCCEEEEEECCCCCC-----C-EEEEEECCCCCCCEEEEEEECHHHEEEEEEEEECCCCCCCCCC
T ss_conf             980898648821418996899996750889-----8-7999992599965379999883644655699857986686537


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             997269999838997544100135579
Q 003660          428 SPGLFLLYMSLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       428 ~~G~V~l~v~~~n~~~~se~~~FeYr~  454 (805)
                      .|=.|.+++..+.+ .+|+...|+|.+
T Consensus        75 ~pV~V~~~L~rsd~-~~Se~~~FtY~P  100 (101)
T d1imhc1          75 LPVSVGIYVVTNAG-RSHDVQPFTYTP  100 (101)
T ss_dssp             SCEEEEEEEEETTE-ECCSCEEEEEEC
T ss_pred             CEEEEEEEEEECCC-CCCCCCCEEECC
T ss_conf             33899999996999-734885738788

>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p65 subunit of NF-kappa B (NFKB), dimerization domain
species: Chicken (Gallus gallus), C-rel [TaxId: 9031]

Probab=94.31  E-value=0.042  Score=30.22  Aligned_cols=83  Identities=14%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             EEEEEECCCCCCCCCCEEEE-EECCCCCCCCCCCCCCEEEECCCE------E-CCEEECCCCCEEEECCCC-----CCCE
Q ss_conf             04587328986689975999-977788884448887479983982------1-011401055026637999-----9972
Q 003660          365 FSITDVSPAWAFSNEKTKIL-VTGFFHKDCLHLSKSNMFCVCGEV------R-VPAEFVQAGVYRCFLPPH-----SPGL  431 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVl-I~G~f~~~~~~~~~~~~~c~FGdv------~-Vpa~~i~~gvLrC~~Pph-----~~G~  431 (805)
                      ..|.+.|-.-|+..||.||. ++|..+...       ..+.|-+.      + .++.+.+...++|.+||.     .|=.
T Consensus         4 L~I~r~s~~s~sv~GG~Ei~LLc~Kv~k~d-------i~V~F~e~~WE~~~~f~~~dvh~q~aIvf~tP~Y~~~I~~pV~   76 (100)
T d1gjia1           4 LRICRVNKNCGSVKGGDEIFILCDKVQKDD-------IEVRFVLDNWEAKGSFSQADVHRQVAIVFRTPPFLRDITEPIT   76 (100)
T ss_dssp             CCEEEESCSEEETTCCCEEEEEESCCCGGG-------CEEEEEETTEEEECBCCGGGEETTTEEEEECCCCSSCCSSCEE
T ss_pred             CEEEEECCCCEECCCCCEEEEEECCCCCCC-------CEEEEECCCCEEEEEECHHHEECCEEEEEECCCCCCCCCCCEE
T ss_conf             389981387211279848999927444899-------8999954670889998889900221999989998787788879


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             69999838997544100135579
Q 003660          432 FLLYMSLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       432 V~l~v~~~n~~~~se~~~FeYr~  454 (805)
                      |.+++.-.+...+|+...|+|.+
T Consensus        77 V~i~l~r~sd~~~Sep~~F~Y~P   99 (100)
T d1gjia1          77 VKMQLRRPSDQEVSEPMDFRYLP   99 (100)
T ss_dssp             EEEEEEEGGGTEECCCEEEEEEC
T ss_pred             EEEEEEECCCCCCCCCCCEEECC
T ss_conf             99999989999614874638769

>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p50 subunit of NF-kappa B transcription factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.18  Score=24.95  Aligned_cols=83  Identities=11%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC-------------CCEECCEEECCCCCEEEECCCC----
Q ss_conf             04587328986689975999977788884448887479983-------------9821011401055026637999----
Q 003660          365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVC-------------GEVRVPAEFVQAGVYRCFLPPH----  427 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~F-------------Gdv~Vpa~~i~~gvLrC~~Pph----  427 (805)
                      ..|.+.|=.-|+..||.||.|+|..+..      -...+.|             |++ -++++.+...|+|.+||=    
T Consensus         2 L~I~r~s~~s~sv~GG~Ev~Ll~~kv~K------~di~V~F~e~~~~~~~WE~~~~f-~~~dvh~Q~aIvf~tPpY~~~~   74 (104)
T d1u36a_           2 LKIVRMDRTAGCVTGGEEIWLLCDKVQK------DDIQIRFYEEEENGGVWEGFGDF-SPTDVHRQFAICFKTPKYKDVN   74 (104)
T ss_dssp             CCEEEESCSEEETTCCCEEEEEESCCCT------TSCEEEEEECC----CEEEECBC-CGGGEETTTEEEEECCCCSCTT
T ss_pred             CEEEEECCCCEECCCCCEEEEEECCCCC------CCEEEEEEEECCCCCCEEEEEEE-CHHHCCCCEEEEEECCCCCCCC
T ss_conf             7899961870412798689999787688------98599999927999805998898-8355312318999899977876


Q ss_pred             --CCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             --997269999838997544100135579
Q 003660          428 --SPGLFLLYMSLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       428 --~~G~V~l~v~~~n~~~~se~~~FeYr~  454 (805)
                        .|=.|.+++.......+|+...|+|.+
T Consensus        75 I~~pV~V~i~l~r~sd~~~Sep~~F~Y~P  103 (104)
T d1u36a_          75 ITKPASVFVQLRRKSDLETSEPKPFLYYP  103 (104)
T ss_dssp             CSSCEEEEEEEECTTTCCBCCCEEEEEEC
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCEEECC
T ss_conf             68867999999959998715882758758

>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p65 subunit of NF-kappa B (NFKB), dimerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.18  Score=25.00  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC--------CCEECCEEECCCCCEEEECCCC------CCC
Q ss_conf             04587328986689975999977788884448887479983--------9821011401055026637999------997
Q 003660          365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVC--------GEVRVPAEFVQAGVYRCFLPPH------SPG  430 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~F--------Gdv~Vpa~~i~~gvLrC~~Pph------~~G  430 (805)
                      ..|.++|-.-|+..||.||.|+|..+..      -...+.|        |++ .++.+.....|+|.+||=      .|=
T Consensus         4 L~I~r~s~~s~sv~GG~Ei~Llc~kv~k------ddi~V~F~E~~WE~~g~f-~~~dvh~Q~aIvfktPpY~~~~I~~pV   76 (107)
T d1my7a_           4 LKICRVNRRSGSCLGGDEIFLLCDKVQK------EDIEVYFTGPGWEARGSF-SQADVHRQVAIVFRTPPYADPSLQAPV   76 (107)
T ss_dssp             CCEEEESCSEEETTCCCEEEEEESCCCT------TSCEEEEEETTEEEECBC-CGGGBCTTSEEEEECCCCSCTTCCSCE
T ss_pred             CEEEECCCCCEECCCCCEEEEEECCCCC------CCCEEEEECCCCEEEEEC-CHHHCCCCCEEEEECCCCCCCCCCCCE
T ss_conf             5899824772011899679999454366------887999963582897571-888831442899989998887679877


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             269999838997544100135579
Q 003660          431 LFLLYMSLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       431 ~V~l~v~~~n~~~~se~~~FeYr~  454 (805)
                      .|.+++.-.+...+|+...|+|.+
T Consensus        77 ~V~i~l~r~sd~~~Sep~~F~Y~P  100 (107)
T d1my7a_          77 RVSMQLRRPSDRELSEPMEFQYLP  100 (107)
T ss_dssp             EEEEEEEETTTTEECCCEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCCCCEEEEC
T ss_conf             999999979999706881738868

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.55  E-value=0.067  Score=28.54  Aligned_cols=30  Identities=43%  Similarity=0.741  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999997554999999999999
Q 003660          762 EVRKKMAAAARIQHRFRSWKVRKEFLNMRR  791 (805)
Q Consensus       762 ~~~~~~~AAv~IQ~~~Rg~~~Rk~f~~~r~  791 (805)
                      +......+|+.||+.+|||..||+|+++||
T Consensus       701 r~~~l~~~~~~iQ~~~R~~l~Rk~~~r~r~  730 (730)
T d1w7ja2         701 RADKLRAACIRIQKTIRGWLMRKKYMRMRR  730 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999998619

>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: p52 subunit of NF-kappa B (NFKB)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.27  Score=23.63  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=58.9

Q ss_pred             EEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC-----------CCEECCEEECCCCCEEEECCCC------
Q ss_conf             04587328986689975999977788884448887479983-----------9821011401055026637999------
Q 003660          365 FSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVC-----------GEVRVPAEFVQAGVYRCFLPPH------  427 (805)
Q Consensus       365 f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~F-----------Gdv~Vpa~~i~~gvLrC~~Pph------  427 (805)
                      ..|.+.|=.-|+..||.||.|+|..+..      -...+.|           |++ -++.+.+...++|.+||=      
T Consensus         2 L~I~r~s~~s~~v~GG~Ei~Ll~~kv~K------ddikV~F~E~~~~~WE~~~~f-~~~dvh~q~aIvfktPpY~~~~I~   74 (101)
T d1a3qa1           2 LKISRMDKTAGSVRGGDEVYLLCDKVQK------DDIEVRFYEDDENGWQAFGDF-SPTDVHKQYAIVFRTPPYHKMKIE   74 (101)
T ss_dssp             CCEEEESCSEEETTCCCEEEEEESSCCT------TTEEEEEEECSSSCEEEECBC-CGGGEETTTEEEEECCCCSCTTCS
T ss_pred             CEEEEECCCCEECCCCCEEEEEECCCCC------CCCEEEEEECCCCCCEEEEEE-CHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             7899831871113898689999675687------888999885599997897582-989901433999989998886568


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             997269999838997544100135579
Q 003660          428 SPGLFLLYMSLDGHKPISQVLNFEYRS  454 (805)
Q Consensus       428 ~~G~V~l~v~~~n~~~~se~~~FeYr~  454 (805)
                      .|=.|.+++.-.+...+|+...|+|.+
T Consensus        75 ~pV~V~i~l~r~sd~~~Sep~~F~Y~P  101 (101)
T d1a3qa1          75 RPVTVFLQLKRKRGGDVSDSKQFTYYP  101 (101)
T ss_dssp             SCEEEEEEEEETTTCCBCCCEEEEEEC
T ss_pred             CCEEEEEEEEECCCCCCCCCCCEEECC
T ss_conf             867999999989999706884638769