BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003661
(805 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1388 bits (3593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/802 (82%), Positives = 729/802 (90%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ML+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+MI+ EAPDPCTLETFLGR+PMVFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE EML RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ AMNHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLREL 601
FH EIEELLYSDVENKEHLCVLKD+ KPILFTMARLDRVKNL+GLVEWYGKN +LREL
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 602 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD 661
NLVVVGGDRRKESKD EE+AEMKKMY LI++YKLNGQFRWISSQM+RVRNGELYRYICD
Sbjct: 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD 663
Query: 662 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEI 721
TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+
Sbjct: 664 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADT 723
Query: 722 LVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLES 781
L DFF KCK DPS+WD+IS GGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLE+
Sbjct: 724 LADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEA 783
Query: 782 RRYLEMFYALKYRKLAESVPLA 803
RRYLEMFYALKYR LA++VPLA
Sbjct: 784 RRYLEMFYALKYRPLAQAVPLA 805
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1351 bits (3496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/802 (81%), Positives = 717/802 (89%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERXITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ L+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+ I+ EAPDPCTLETFLGR+P VFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE E L RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ A NHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD SIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLREL 601
FH EIEELLYSDVENKEHLCVLKD+ KPILFT ARLDRVKNL+GLVEWYGKN +LREL
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 602 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD 661
NLVVVGGDRRKESKD EE+AE KK Y LI++YKLNGQFRWISSQ +RVRNGELYRYICD
Sbjct: 604 ANLVVVGGDRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYICD 663
Query: 662 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEI 721
TKGAFVQPALYEAFGLTVVEA TCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+
Sbjct: 664 TKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADT 723
Query: 722 LVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLES 781
L DFF KCK DPS+WD+IS GGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLE+
Sbjct: 724 LADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEA 783
Query: 782 RRYLEMFYALKYRKLAESVPLA 803
RRYLE FYALKYR LA++VPLA
Sbjct: 784 RRYLEXFYALKYRPLAQAVPLA 805
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 223/487 (45%), Gaps = 59/487 (12%)
Query: 278 NVVILTPHGYFAQDDV--LGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILII 335
+V L P G F D +PD GGQ+VY+ E+ L + + G+ Q+ II
Sbjct: 9 HVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDII 56
Query: 336 TRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVA 395
TR + D ++ T I+R+PF +K ++ + E+WPYL Y +
Sbjct: 57 TRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKI- 110
Query: 396 VEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIY---WKN 452
+ +E P ++ +Y DG + LL + G+ H+L K ++ +K
Sbjct: 111 INFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKE 170
Query: 453 LDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 512
+D+++ F + A+ + M++ D II ST QE GQY SH LYR +
Sbjct: 171 MDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LYRGAVNV 217
Query: 513 DVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPI 572
+ D KF+++ PG + ++ +K + K I + L D+ E + + P
Sbjct: 218 ED-DDKFSVIPPGVNTRVFDGEYGDKIKAK-----ITKYLERDL-GSERMEL------PA 264
Query: 573 LFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDL-----EEQAEMKKM 627
+ +RLD+ KN GLVE Y +N +L++ NLV+ +D EE+ + K+
Sbjct: 265 IIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKI 324
Query: 628 YSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL 687
LID G+ + G Y Y+ F + YE FGL VEAM GL
Sbjct: 325 IELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPVEAMASGL 383
Query: 688 PTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRI 747
P T GGPAEI+ GK G +DP E A L+ FE + +Y +K G +R+
Sbjct: 384 PAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEK----GKQRV 439
Query: 748 EEKYTWK 754
EE+YTW+
Sbjct: 440 EERYTWQ 446
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 102/248 (41%), Gaps = 36/248 (14%)
Query: 517 PKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTM 576
P F + G D+ + P T E + ++L ++D P++
Sbjct: 163 PTFEHLPSGVDVKRFTPATPEDKSATR-----KKLGFTD-------------TTPVIACN 204
Query: 577 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQ-YK 635
+RL K L++ + R L++VG R + + ++++ + + Q K
Sbjct: 205 SRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYEST--------LRRLATDVSQNVK 256
Query: 636 LNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG 695
G+ + +N + +++ T+G + E G+ +EA CG+P A G
Sbjct: 257 FLGRLEY-QDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSG 312
Query: 696 GPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKI 755
G E V +G ++ ++ +E+L++ + DP + G +E +++W+I
Sbjct: 313 GAPE-TVTPATGLVVEGSDVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEI 367
Query: 756 YSQRLLTL 763
+RL +
Sbjct: 368 MGERLTNI 375
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 102/248 (41%), Gaps = 36/248 (14%)
Query: 517 PKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTM 576
P F + G D+ + P T E + ++L ++D P++
Sbjct: 163 PTFEHLPSGVDVKRFTPATPEDKSATR-----KKLGFTD-------------TTPVIACN 204
Query: 577 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQ-YK 635
+RL K L++ + R L++VG R + + ++++ + + Q K
Sbjct: 205 SRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYEST--------LRRLATDVSQNVK 256
Query: 636 LNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG 695
G+ + +N + +++ T+G + E G+ +EA CG+P A G
Sbjct: 257 FLGRLEY-QDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSG 312
Query: 696 GPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKI 755
G E V +G ++ ++ +E+L++ + DP + G +E +++W+I
Sbjct: 313 GAPE-TVTPATGLVVEGSDVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEI 367
Query: 756 YSQRLLTL 763
+RL +
Sbjct: 368 MGERLTNI 375
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 673 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 708
E+FGL ++EAM CG+P T GG E+I +G +GY
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 330
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 673 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 708
E+FGL ++EAM CG+P T GG E+I +G +GY
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 350
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 546 PEIEELLYSDVENK--EHLCVLK----DRNKPILFTMARLDRVKNLTGLVEWYGKNAKLR 599
P I+ L +VE K E L +L+ D KPI+ ++R D K + ++E Y K +
Sbjct: 201 PSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKI 260
Query: 600 ELVNLVVVGGDR----------RKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 649
V L++VG K + + E ++K + +LI +
Sbjct: 261 PGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVH--------------- 305
Query: 650 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 708
R ++ D +Q ++ E FGLTV EAM G P GG IV+G++G+
Sbjct: 306 AREVNAFQRASDV---ILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 546 PEIEELLYSDVENK--EHLCVLK----DRNKPILFTMARLDRVKNLTGLVEWYGKNAKLR 599
P I+ L +VE K E L +L+ D KPI+ ++R D K + ++E Y K +
Sbjct: 201 PSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKI 260
Query: 600 ELVNLVVVGGDR----------RKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 649
V L++VG K + + E ++K + +LI +
Sbjct: 261 PGVQLLLVGVXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVH--------------- 305
Query: 650 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 708
R ++ D +Q ++ E FGLTV EA G P GG IV+G++G+
Sbjct: 306 AREVNAFQRASDV---ILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 666 FVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI-DPYHGEQAAEIL 722
+ PA EA G+ ++EA+T GLP T G A I + G I +P+ EQ E+L
Sbjct: 274 LLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 546 PEIEELLYSDVENK--EHLCVLK----DRNKPILFTMARLDRVKNLTGLVEWYGKNAKLR 599
P I+ L +VE K E L +L+ D KPI+ ++R D K + ++E Y K +
Sbjct: 201 PSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKI 260
Query: 600 ELVNLVVVGGDR----------RKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 649
V L++VG K + + E ++K + +LI +
Sbjct: 261 PGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVH--------------- 305
Query: 650 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 708
R ++ D +Q ++ FGLTV EAM G P GG IV+G++G+
Sbjct: 306 AREVNAFQRASDV---ILQMSIRAGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 668 QPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI-DPYHGEQAAEIL 722
PA EA G+ ++EA+T GLP T G A I + G I +P+ EQ E+L
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 673 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKAD 732
E FGLT +EA G P A +GG E ++N K+GY ++ E ++D +K +
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNADVNE-----IIDAXKKVSKN 162
Query: 733 PSYWDKISLGGLKRIEE 749
P DK +R +E
Sbjct: 163 P---DKFKKDCFRRAKE 176
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 567 DRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKK 626
DR P++ + RL+ K + + ++E V +V++G ++K K L+ E
Sbjct: 324 DRKIPLIAFIGRLEEQKGPDVMAAAIPE--LMQEDVQIVLLGTGKKKFEKLLKSMEE--- 378
Query: 627 MYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCG 686
K G+ R + N L I P+ +E GL ++ M G
Sbjct: 379 --------KYPGKVRAVVK-----FNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYG 425
Query: 687 LPTFATCKGGPAEIIVNGKSGYHI 710
P GG + ++ GK+G+H+
Sbjct: 426 TPCACASTGGLVDTVIEGKTGFHM 449
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 576 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYS 629
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 308
Query: 630 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 689
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 309 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 357
Query: 690 FATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEE 749
A+ GG +II N ++G + + A ++ E ++D S + + K+
Sbjct: 358 IASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAM 412
Query: 750 KYTWKIYSQR 759
++W+ ++R
Sbjct: 413 SFSWEKSAER 422
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 576 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYS 629
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 308
Query: 630 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 689
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 309 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 357
Query: 690 FATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEE 749
A+ GG +II N ++G + + A ++ E ++D S + + K+
Sbjct: 358 IASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAM 412
Query: 750 KYTWKIYSQR 759
++W+ ++R
Sbjct: 413 SFSWEKSAER 422
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 576 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYS 629
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 258 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 309
Query: 630 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 689
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 310 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 358
Query: 690 FATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEE 749
A+ GG +II N ++G + + A ++ E ++D S + + K+
Sbjct: 359 IASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRE----NCKKRAM 413
Query: 750 KYTWKIYSQR 759
++W+ ++R
Sbjct: 414 SFSWEKSAER 423
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 26/167 (15%)
Query: 576 MARLDR----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKE--SKDLEEQAEMKKMYS 629
+ R DR V L +E + +E+ +++ GD E ++ LEE+
Sbjct: 42 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-------- 93
Query: 630 LIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 689
+G + I+ ++R E R + + + P+ +E FGL +EAM G
Sbjct: 94 -------HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142
Query: 690 FATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYW 736
A+ GG +II N ++G + + A ++ E ++D S +
Sbjct: 143 IASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKF 188
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 669 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 727
P+ E+FGL +EA G P A GG + G++G +D + A+ L +
Sbjct: 312 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 370
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 241 GDTAERA--LEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPD 298
GD AE+A L + Q E +LE + + + V+ P G +G
Sbjct: 423 GDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIG--- 479
Query: 299 TGGQVVYIL---DQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 355
TG Y++ A+ L++ K+ G D+ P I + ++
Sbjct: 480 TGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI---------------- 523
Query: 356 GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE 392
Y+D R + TEKG+V + + EV PY++ +TE
Sbjct: 524 -QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 669 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 727
P+ E+FGL +EA G P A GG + G++G +D + A+ L +
Sbjct: 332 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 31/164 (18%)
Query: 602 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD 661
V +++VG R + +L EQA L G R++ Q++ R
Sbjct: 241 VEILIVG---RGDEDELREQAG-----------DLAGHLRFLG-QVDDATKASAMR---- 281
Query: 662 TKGAFVQPALY-EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAE 720
+ + P L E+FG+ +VEAM G A+ ++ +G +G + + A
Sbjct: 282 SADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAA 341
Query: 721 ILVDFFEKCKADPSYWDKISLGGLKRIEE---KYTWKIYSQRLL 761
L+ E D++ G + R E +Y W + S +++
Sbjct: 342 ALIGILED--------DQLRAGYVARASERVHRYDWSVVSAQIM 377
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 420 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM 470
A L C +A+ + +T +PD+ + +LDD Y+F Q + IA+
Sbjct: 398 ADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAI 448
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 136 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 195
Query: 216 TTVVPETPFSELALRFQEIGLERGW 240
PE F+E L + GL GW
Sbjct: 196 PVCTPEKDFAEHLLIPRTRGLLSGW 220
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 95 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 154
Query: 216 TTVVPETPFSELALRFQEIGLERGWG 241
PE F+E L + GL GW
Sbjct: 155 PVCTPEKDFAEHLLIPRTRGLLSGWA 180
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 510 HGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRN 569
HG +F+P I+ P D +EK H + E++ S + K N
Sbjct: 96 HGPQIFNPSGQILGPKYDGKYLXQVLQEKLGETRVHQALTEVVISSFDIK--------TN 147
Query: 570 KPILFTMARL 579
KP++FT + L
Sbjct: 148 KPVIFTKSNL 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,611,284
Number of Sequences: 62578
Number of extensions: 1071920
Number of successful extensions: 2623
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2588
Number of HSP's gapped (non-prelim): 34
length of query: 805
length of database: 14,973,337
effective HSP length: 107
effective length of query: 698
effective length of database: 8,277,491
effective search space: 5777688718
effective search space used: 5777688718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)