Query 003662
Match_columns 805
No_of_seqs 411 out of 1675
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.1 1.8E-11 3.8E-16 127.8 1.1 83 517-635 243-330 (336)
2 KOG0956 PHD finger protein AF1 99.0 9.4E-11 2E-15 134.1 3.7 135 509-645 6-189 (900)
3 KOG1512 PHD Zn-finger protein 98.9 1.9E-10 4E-15 120.9 1.4 92 507-635 257-362 (381)
4 COG5141 PHD zinc finger-contai 98.5 3.3E-08 7.1E-13 110.3 1.2 109 506-622 191-344 (669)
5 COG1246 ArgA N-acetylglutamate 98.4 3.2E-07 7E-12 90.4 6.7 63 739-801 43-106 (153)
6 KOG4443 Putative transcription 98.4 8.8E-08 1.9E-12 110.5 1.8 88 507-629 17-112 (694)
7 KOG0955 PHD finger protein BR1 98.4 1.6E-07 3.5E-12 114.9 3.6 106 505-618 216-367 (1051)
8 PF00583 Acetyltransf_1: Acety 98.4 1.4E-06 3E-11 74.6 8.4 59 742-800 2-65 (83)
9 KOG4299 PHD Zn-finger protein 98.3 5.6E-07 1.2E-11 103.9 3.7 51 577-636 255-305 (613)
10 PF15446 zf-PHD-like: PHD/FYVE 98.2 1.4E-06 2.9E-11 86.7 5.6 94 510-614 1-142 (175)
11 KOG0954 PHD finger protein [Ge 98.2 5.8E-07 1.3E-11 104.6 2.7 104 506-617 269-416 (893)
12 PF13673 Acetyltransf_10: Acet 98.1 1.1E-05 2.3E-10 73.4 9.0 60 736-800 44-103 (117)
13 smart00258 SAND SAND domain. 98.0 1.8E-06 3.9E-11 75.4 1.7 62 432-494 5-68 (73)
14 PF13508 Acetyltransf_7: Acety 98.0 1.8E-05 3.9E-10 68.3 7.8 58 736-794 3-60 (79)
15 KOG4299 PHD Zn-finger protein 98.0 2.2E-06 4.8E-11 99.1 1.2 45 508-552 253-304 (613)
16 KOG4323 Polycomb-like PHD Zn-f 98.0 5.9E-06 1.3E-10 93.7 4.3 130 507-642 82-230 (464)
17 KOG0383 Predicted helicase [Ge 97.9 5.2E-06 1.1E-10 98.6 3.6 88 525-633 1-91 (696)
18 cd04301 NAT_SF N-Acyltransfera 97.9 4.4E-05 9.5E-10 59.7 7.7 61 739-799 2-64 (65)
19 PRK07922 N-acetylglutamate syn 97.9 3.5E-05 7.6E-10 76.8 8.1 61 739-799 48-109 (169)
20 PF00628 PHD: PHD-finger; Int 97.9 2.7E-06 5.8E-11 68.5 0.1 48 578-634 2-49 (51)
21 KOG1244 Predicted transcriptio 97.9 3.1E-06 6.7E-11 89.3 0.5 46 507-552 280-330 (336)
22 PRK07757 acetyltransferase; Pr 97.9 5.2E-05 1.1E-09 72.8 8.4 61 739-799 44-104 (152)
23 PLN02706 glucosamine 6-phospha 97.9 6.4E-05 1.4E-09 72.0 9.0 65 737-801 54-126 (150)
24 PRK10146 aminoalkylphosphonic 97.9 4.8E-05 1E-09 71.8 8.0 63 738-800 49-116 (144)
25 KOG1512 PHD Zn-finger protein 97.8 4.1E-06 8.8E-11 88.8 0.6 93 436-551 265-361 (381)
26 PRK03624 putative acetyltransf 97.8 5.3E-05 1.2E-09 70.1 7.7 63 737-800 46-108 (140)
27 KOG4443 Putative transcription 97.8 9E-06 1.9E-10 94.4 2.2 103 508-613 68-180 (694)
28 smart00249 PHD PHD zinc finger 97.8 2.2E-05 4.8E-10 60.6 3.4 46 578-633 2-47 (47)
29 PHA00673 acetyltransferase dom 97.7 0.00013 2.8E-09 72.6 9.3 71 734-804 53-129 (154)
30 KOG1473 Nucleosome remodeling 97.7 9E-06 1.9E-10 98.4 0.9 126 506-643 342-486 (1414)
31 KOG0825 PHD Zn-finger protein 97.7 1.6E-05 3.5E-10 93.2 2.2 54 573-637 213-267 (1134)
32 PF00628 PHD: PHD-finger; Int 97.7 1.2E-05 2.6E-10 64.7 0.8 42 510-551 1-49 (51)
33 PTZ00330 acetyltransferase; Pr 97.7 0.00016 3.5E-09 68.4 8.7 65 737-801 53-123 (147)
34 PF13527 Acetyltransf_9: Acety 97.7 0.00019 4.2E-09 66.5 9.0 98 696-802 10-114 (127)
35 PLN02825 amino-acid N-acetyltr 97.7 0.00011 2.3E-09 85.7 8.6 62 738-799 409-471 (515)
36 TIGR03827 GNAT_ablB putative b 97.7 0.00014 2.9E-09 77.7 8.7 67 735-801 157-224 (266)
37 smart00249 PHD PHD zinc finger 97.6 3.9E-05 8.5E-10 59.2 3.0 41 510-550 1-47 (47)
38 PRK10975 TDP-fucosamine acetyl 97.6 0.00017 3.7E-09 72.8 8.4 68 733-800 99-166 (194)
39 PRK10314 putative acyltransfer 97.6 0.00017 3.6E-09 71.0 8.1 63 739-801 51-116 (153)
40 PHA01807 hypothetical protein 97.6 0.00016 3.4E-09 71.8 7.5 64 736-799 53-120 (153)
41 PF01342 SAND: SAND domain; I 97.6 5.1E-06 1.1E-10 74.4 -3.0 62 432-494 13-77 (82)
42 TIGR02382 wecD_rffC TDP-D-fuco 97.5 0.00032 7E-09 70.8 8.9 63 739-801 102-164 (191)
43 TIGR01575 rimI ribosomal-prote 97.5 0.00037 8E-09 63.9 8.5 63 737-800 32-94 (131)
44 PRK09491 rimI ribosomal-protei 97.5 0.00054 1.2E-08 65.4 8.9 66 734-800 38-103 (146)
45 KOG0383 Predicted helicase [Ge 97.4 6.7E-05 1.4E-09 89.4 2.9 47 506-552 45-93 (696)
46 TIGR00124 cit_ly_ligase [citra 97.4 0.00042 9E-09 76.9 8.7 65 732-801 27-91 (332)
47 TIGR01890 N-Ac-Glu-synth amino 97.4 0.0004 8.6E-09 79.2 8.5 61 739-799 325-386 (429)
48 PRK12308 bifunctional arginino 97.4 0.00042 9.2E-09 82.6 8.7 61 739-799 506-566 (614)
49 cd02169 Citrate_lyase_ligase C 97.4 0.00046 1E-08 75.5 7.9 58 739-801 9-66 (297)
50 PRK10140 putative acetyltransf 97.3 0.0011 2.3E-08 63.6 8.6 65 735-800 50-119 (162)
51 COG5034 TNG2 Chromatin remodel 97.2 0.00012 2.6E-09 77.1 1.9 45 577-636 223-270 (271)
52 KOG1973 Chromatin remodeling p 97.1 0.00017 3.7E-09 77.9 1.7 43 509-552 222-267 (274)
53 PRK05279 N-acetylglutamate syn 97.1 0.0013 2.9E-08 75.2 8.7 61 739-799 337-398 (441)
54 TIGR02406 ectoine_EctA L-2,4-d 97.1 0.0016 3.4E-08 64.1 8.0 63 737-799 40-105 (157)
55 TIGR03448 mycothiol_MshD mycot 97.1 0.0015 3.2E-08 69.7 8.2 67 734-800 198-266 (292)
56 KOG1973 Chromatin remodeling p 97.1 0.00021 4.5E-09 77.3 1.4 37 592-635 228-267 (274)
57 KOG0825 PHD Zn-finger protein 97.0 0.00029 6.4E-09 83.1 1.4 46 507-552 214-265 (1134)
58 PRK01346 hypothetical protein; 96.8 0.0035 7.6E-08 70.6 8.6 64 738-801 49-120 (411)
59 COG5034 TNG2 Chromatin remodel 96.8 0.0006 1.3E-08 72.0 1.8 43 509-552 222-269 (271)
60 TIGR03448 mycothiol_MshD mycot 96.7 0.0043 9.4E-08 66.2 7.9 55 736-790 46-100 (292)
61 PRK09831 putative acyltransfer 96.5 0.0042 9E-08 59.8 5.7 52 738-794 55-106 (147)
62 COG0456 RimI Acetyltransferase 96.5 0.0088 1.9E-07 58.3 7.9 54 746-799 72-131 (177)
63 PF13420 Acetyltransf_4: Acety 96.5 0.018 4E-07 55.0 9.7 57 743-800 58-117 (155)
64 PRK15130 spermidine N1-acetylt 96.4 0.012 2.6E-07 58.6 8.4 64 737-801 58-124 (186)
65 TIGR03103 trio_acet_GNAT GNAT- 96.4 0.0096 2.1E-07 70.3 8.8 66 734-799 121-194 (547)
66 KOG0957 PHD finger protein [Ge 96.4 0.0012 2.6E-08 75.0 1.1 47 576-633 545-595 (707)
67 PF13302 Acetyltransf_3: Acety 96.3 0.021 4.7E-07 53.3 9.2 65 736-801 56-125 (142)
68 PF13831 PHD_2: PHD-finger; PD 96.3 0.001 2.2E-08 50.8 0.1 34 518-551 2-36 (36)
69 PRK13688 hypothetical protein; 96.3 0.011 2.4E-07 58.9 7.3 48 740-787 49-106 (156)
70 TIGR01686 FkbH FkbH-like domai 96.3 0.013 2.9E-07 64.3 8.5 65 735-800 230-297 (320)
71 PF13523 Acetyltransf_8: Acety 96.2 0.028 6E-07 54.0 9.6 67 733-799 45-118 (152)
72 KOG3139 N-acetyltransferase [G 96.2 0.019 4.2E-07 57.5 8.1 55 747-801 68-125 (165)
73 PF08445 FR47: FR47-like prote 95.9 0.024 5.1E-07 50.8 6.9 54 744-798 6-59 (86)
74 TIGR03585 PseH pseudaminic aci 95.9 0.035 7.7E-07 53.0 8.4 61 739-801 54-117 (156)
75 cd04718 BAH_plant_2 BAH, or Br 95.9 0.0039 8.4E-08 61.7 1.7 27 605-636 1-27 (148)
76 PRK10809 ribosomal-protein-S5- 95.8 0.031 6.8E-07 56.1 8.1 66 736-802 77-146 (194)
77 COG3393 Predicted acetyltransf 95.7 0.017 3.7E-07 62.0 5.8 63 737-799 178-241 (268)
78 KOG0957 PHD finger protein [Ge 95.6 0.0055 1.2E-07 69.8 1.9 106 508-617 119-278 (707)
79 KOG1245 Chromatin remodeling c 95.6 0.0029 6.4E-08 81.2 -0.4 56 575-641 1108-1163(1404)
80 PRK10562 putative acetyltransf 95.5 0.029 6.3E-07 53.7 6.3 50 738-791 50-99 (145)
81 KOG0956 PHD finger protein AF1 95.5 0.0057 1.2E-07 71.9 1.5 51 575-636 5-57 (900)
82 PRK10514 putative acetyltransf 95.5 0.029 6.3E-07 53.2 6.0 48 739-791 53-100 (145)
83 KOG0955 PHD finger protein BR1 95.4 0.0093 2E-07 74.3 3.0 51 574-635 218-268 (1051)
84 KOG3396 Glucosamine-phosphate 95.4 0.034 7.4E-07 54.4 6.2 64 736-799 53-124 (150)
85 COG3153 Predicted acetyltransf 95.4 0.066 1.4E-06 54.5 8.5 62 738-799 48-114 (171)
86 PRK10151 ribosomal-protein-L7/ 95.2 0.092 2E-06 51.9 8.8 62 739-801 70-134 (179)
87 cd04718 BAH_plant_2 BAH, or Br 95.2 0.01 2.2E-07 58.8 2.0 24 529-552 1-26 (148)
88 COG2153 ElaA Predicted acyltra 94.5 0.13 2.8E-06 51.0 7.6 97 692-801 18-118 (155)
89 PF08444 Gly_acyl_tr_C: Aralky 94.5 0.04 8.6E-07 50.4 3.8 52 740-795 3-54 (89)
90 smart00258 SAND SAND domain. 94.1 0.057 1.2E-06 47.7 3.8 49 246-296 20-69 (73)
91 COG1247 Sortase and related ac 93.9 0.24 5.1E-06 50.4 8.2 73 729-803 45-123 (169)
92 KOG4323 Polycomb-like PHD Zn-f 93.8 0.023 5E-07 65.3 0.9 43 510-552 170-223 (464)
93 KOG3216 Diamine acetyltransfer 93.6 0.28 6E-06 49.1 7.9 98 695-798 19-122 (163)
94 COG5141 PHD zinc finger-contai 93.6 0.026 5.7E-07 64.4 0.9 47 576-633 194-240 (669)
95 KOG1245 Chromatin remodeling c 93.6 0.018 4E-07 74.2 -0.4 47 506-552 1106-1157(1404)
96 TIGR01211 ELP3 histone acetylt 93.6 0.15 3.2E-06 60.2 7.1 58 743-800 421-497 (522)
97 PF12746 GNAT_acetyltran: GNAT 93.4 0.24 5.2E-06 53.7 7.9 52 734-787 164-215 (265)
98 KOG0954 PHD finger protein [Ge 93.4 0.034 7.5E-07 66.2 1.4 51 574-635 270-320 (893)
99 PF14542 Acetyltransf_CG: GCN5 92.4 0.48 1.1E-05 41.9 7.1 55 740-795 3-57 (78)
100 KOG2488 Acetyltransferase (GNA 92.3 0.27 5.8E-06 50.8 5.9 66 734-799 91-159 (202)
101 PF13832 zf-HC5HC2H_2: PHD-zin 92.3 0.11 2.4E-06 48.3 3.0 33 576-616 56-90 (110)
102 PF01342 SAND: SAND domain; I 91.7 0.095 2.1E-06 47.2 1.7 54 240-295 18-77 (82)
103 COG0454 WecD Histone acetyltra 91.7 0.15 3.2E-06 42.1 2.8 30 766-795 87-116 (156)
104 COG2388 Predicted acetyltransf 90.7 0.61 1.3E-05 43.6 6.0 60 734-795 15-74 (99)
105 PF12568 DUF3749: Acetyltransf 90.5 1.6 3.5E-05 42.6 8.9 62 735-801 39-100 (128)
106 PF13831 PHD_2: PHD-finger; PD 90.4 0.041 9E-07 42.1 -1.5 33 594-633 2-35 (36)
107 COG1670 RimL Acetyltransferase 90.2 1.5 3.2E-05 42.2 8.6 65 734-799 64-135 (187)
108 PF13480 Acetyltransf_6: Acety 89.4 2.3 5E-05 39.5 9.0 64 735-799 70-133 (142)
109 KOG3397 Acetyltransferases [Ge 88.4 0.96 2.1E-05 46.3 5.8 65 738-802 57-125 (225)
110 COG4552 Eis Predicted acetyltr 82.5 1.7 3.8E-05 48.8 4.9 69 732-804 37-114 (389)
111 COG3053 CitC Citrate lyase syn 80.0 4.4 9.5E-05 44.7 6.7 59 736-799 37-95 (352)
112 PF07227 DUF1423: Protein of u 79.0 2.4 5.1E-05 49.0 4.6 59 577-638 130-194 (446)
113 PF13718 GNAT_acetyltr_2: GNAT 78.3 1.7 3.6E-05 45.4 2.8 25 766-790 96-120 (196)
114 PF14446 Prok-RING_1: Prokaryo 75.4 2 4.4E-05 36.0 2.0 37 576-617 6-42 (54)
115 KOG1081 Transcription factor N 72.2 3.2 7E-05 48.6 3.4 48 504-552 85-132 (463)
116 COG1243 ELP3 Histone acetyltra 71.9 2.7 5.8E-05 48.8 2.6 46 753-801 446-492 (515)
117 PF07897 DUF1675: Protein of u 71.2 2 4.4E-05 47.1 1.4 33 449-481 251-283 (284)
118 COG3981 Predicted acetyltransf 67.3 12 0.00025 38.5 5.7 65 735-801 69-138 (174)
119 KOG1473 Nucleosome remodeling 66.5 3.1 6.8E-05 52.5 1.8 44 576-633 345-388 (1414)
120 PF12861 zf-Apc11: Anaphase-pr 65.4 2.8 6.2E-05 38.2 0.9 45 507-552 20-79 (85)
121 PF07897 DUF1675: Protein of u 65.3 6.8 0.00015 43.1 3.9 66 213-282 209-283 (284)
122 KOG3138 Predicted N-acetyltran 61.1 5.5 0.00012 41.3 2.2 48 753-800 82-130 (187)
123 PF14446 Prok-RING_1: Prokaryo 60.0 5.2 0.00011 33.6 1.4 30 508-537 5-38 (54)
124 PF02474 NodA: Nodulation prot 55.8 11 0.00025 38.7 3.3 35 760-795 85-119 (196)
125 KOG3235 Subunit of the major N 54.7 21 0.00045 36.5 4.9 49 740-788 45-99 (193)
126 PF13771 zf-HC5HC2H: PHD-like 53.7 6.8 0.00015 34.9 1.3 32 577-616 38-71 (90)
127 KOG2752 Uncharacterized conser 53.2 9.8 0.00021 42.2 2.6 102 510-614 57-167 (345)
128 COG1444 Predicted P-loop ATPas 51.4 8.9 0.00019 47.4 2.1 54 714-790 508-561 (758)
129 KOG4628 Predicted E3 ubiquitin 50.1 9.8 0.00021 43.0 2.0 43 509-552 230-275 (348)
130 PF01853 MOZ_SAS: MOZ/SAS fami 47.7 54 0.0012 34.2 6.8 28 762-789 82-109 (188)
131 PRK00756 acyltransferase NodA; 47.7 19 0.00041 36.9 3.4 35 760-795 85-119 (196)
132 KOG3234 Acetyltransferase, (GN 46.4 11 0.00025 38.2 1.6 30 763-792 72-101 (173)
133 cd04264 DUF619-NAGS DUF619 dom 46.2 42 0.00091 31.4 5.2 46 744-789 16-63 (99)
134 PF15446 zf-PHD-like: PHD/FYVE 45.2 13 0.00028 38.0 1.8 57 578-637 2-61 (175)
135 KOG1734 Predicted RING-contain 45.2 5.6 0.00012 43.3 -0.7 49 504-552 220-278 (328)
136 PF11793 FANCL_C: FANCL C-term 44.4 9.6 0.00021 33.2 0.7 29 509-537 3-39 (70)
137 PF13832 zf-HC5HC2H_2: PHD-zin 43.7 12 0.00025 34.8 1.2 31 507-537 54-87 (110)
138 KOG1829 Uncharacterized conser 42.4 7 0.00015 46.8 -0.6 49 578-639 514-562 (580)
139 PLN03238 probable histone acet 41.2 41 0.0009 37.2 5.0 28 763-790 158-185 (290)
140 PRK10001 D-alanyl-D-alanine ca 40.8 42 0.00092 38.8 5.3 47 743-790 346-392 (400)
141 PF10080 DUF2318: Predicted me 40.2 57 0.0012 30.9 5.1 68 412-487 3-86 (102)
142 PF13901 DUF4206: Domain of un 39.7 23 0.00049 37.0 2.7 36 577-613 154-189 (202)
143 PF13639 zf-RING_2: Ring finge 39.5 3.8 8.3E-05 31.9 -2.3 40 509-551 1-44 (44)
144 PF11793 FANCL_C: FANCL C-term 38.8 17 0.00036 31.8 1.3 34 577-613 4-39 (70)
145 PF01233 NMT: Myristoyl-CoA:pr 38.7 1.3E+02 0.0027 30.9 7.6 66 732-797 73-147 (162)
146 PF13771 zf-HC5HC2H: PHD-like 38.6 16 0.00034 32.6 1.2 31 507-537 35-68 (90)
147 PF13880 Acetyltransf_13: ESCO 37.2 25 0.00053 31.1 2.1 24 765-788 10-33 (70)
148 cd04265 DUF619-NAGS-U DUF619 d 36.7 52 0.0011 30.9 4.3 32 758-789 32-63 (99)
149 PF07943 PBP5_C: Penicillin-bi 36.4 37 0.00081 30.0 3.2 27 744-770 62-88 (91)
150 TIGR03694 exosort_acyl putativ 35.8 2.5E+02 0.0053 30.1 9.8 102 695-799 18-178 (241)
151 PRK10793 D-alanyl-D-alanine ca 34.3 64 0.0014 37.4 5.4 47 743-790 353-399 (403)
152 KOG3612 PHD Zn-finger protein 33.5 27 0.00059 41.4 2.3 47 506-552 58-107 (588)
153 KOG4144 Arylalkylamine N-acety 33.2 29 0.00064 35.3 2.2 51 752-803 94-145 (190)
154 KOG2747 Histone acetyltransfer 31.8 43 0.00093 38.6 3.5 22 763-784 263-284 (396)
155 KOG1246 DNA-binding protein ju 31.7 31 0.00066 43.8 2.6 46 507-552 154-203 (904)
156 KOG2036 Predicted P-loop ATPas 31.5 42 0.0009 41.3 3.4 55 714-791 591-645 (1011)
157 PLN03239 histone acetyltransfe 30.3 66 0.0014 36.6 4.5 26 763-788 216-241 (351)
158 PTZ00064 histone acetyltransfe 30.3 65 0.0014 38.3 4.6 27 762-788 386-412 (552)
159 PF07649 C1_3: C1-like domain; 28.9 22 0.00047 25.8 0.4 28 578-611 3-30 (30)
160 KOG1642 Ribonuclease, T2 famil 27.6 36 0.00079 37.0 1.9 59 260-318 116-189 (263)
161 PLN00104 MYST -like histone ac 27.4 63 0.0014 37.9 3.8 22 763-784 309-330 (450)
162 KOG1632 Uncharacterized PHD Zn 27.1 35 0.00076 38.7 1.8 44 595-642 74-119 (345)
163 PF10187 Nefa_Nip30_N: N-termi 26.9 46 0.001 31.4 2.2 26 285-310 35-60 (102)
164 KOG1246 DNA-binding protein ju 25.3 50 0.0011 42.0 2.8 48 577-636 157-204 (904)
165 COG0143 MetG Methionyl-tRNA sy 24.9 78 0.0017 38.3 4.1 47 543-612 125-171 (558)
166 PF13066 DUF3929: Protein of u 24.5 66 0.0014 27.2 2.4 28 283-310 4-31 (65)
167 PF05301 Mec-17: Touch recepto 24.5 1.2E+02 0.0026 29.6 4.5 20 768-787 54-73 (120)
168 PRK11397 dacD D-alanyl-D-alani 24.2 1.1E+02 0.0024 35.3 5.1 44 743-787 343-386 (388)
169 PF12861 zf-Apc11: Anaphase-pr 23.3 33 0.00071 31.5 0.5 30 577-613 34-63 (85)
170 PF13901 DUF4206: Domain of un 22.9 59 0.0013 34.0 2.4 39 507-552 151-197 (202)
171 KOG4628 Predicted E3 ubiquitin 22.9 35 0.00077 38.7 0.8 46 576-635 230-275 (348)
172 PF12678 zf-rbx1: RING-H2 zinc 21.6 28 0.0006 30.5 -0.3 26 524-551 48-73 (73)
173 TIGR03019 pepcterm_femAB FemAB 21.2 2.1E+02 0.0047 31.5 6.5 68 737-804 34-107 (330)
174 cd00716 creatine_kinase_like P 21.2 71 0.0015 36.5 2.7 83 698-788 65-149 (357)
175 TIGR03019 pepcterm_femAB FemAB 20.9 2E+02 0.0044 31.6 6.2 60 739-799 198-258 (330)
176 PRK09555 feoA ferrous iron tra 20.4 62 0.0013 28.6 1.6 24 212-235 20-43 (74)
177 KOG1701 Focal adhesion adaptor 20.4 74 0.0016 37.0 2.6 34 577-612 396-429 (468)
178 PF04216 FdhE: Protein involve 20.3 60 0.0013 35.6 1.9 38 505-552 169-219 (290)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.10 E-value=1.8e-11 Score=127.82 Aligned_cols=83 Identities=30% Similarity=0.876 Sum_probs=72.7
Q ss_pred CCceeecCCCCCcccccccCC-----CCCCCCCccccccCcCCcCCcccccccCCCCCCCCcccccCccccCCCCCCccc
Q 003662 517 GENLLLCNGCPLAFHAACLDP-----LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATF 591 (805)
Q Consensus 517 gG~LL~Cd~Cp~afH~~CL~~-----~~vP~g~W~C~~C~~~~~~~~s~pirl~r~~~~~~~e~~~C~vC~~~d~s~~~~ 591 (805)
.++|+.|..|.++-|..||.. ..+....|+|..|+. |.||+-.+
T Consensus 243 peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-------------------------csicgtse------ 291 (336)
T KOG1244|consen 243 PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-------------------------CSICGTSE------ 291 (336)
T ss_pred chhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-------------------------eccccCcC------
Confidence 468999999999999999996 345678999999986 99999765
Q ss_pred CCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 592 DDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 592 ~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
+++.+|+||-|+|.||++||.| +|.+.|+|.|-| .-|-+
T Consensus 292 nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~ 330 (336)
T KOG1244|consen 292 NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLE 330 (336)
T ss_pred CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHH
Confidence 5789999999999999999999 889999999999 66643
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.04 E-value=9.4e-11 Score=134.14 Aligned_cols=135 Identities=25% Similarity=0.580 Sum_probs=90.2
Q ss_pred cccccccCC-----CceeecCC--CCCcccccccCCCCCCCCCccccccCcCCc-----C-------Cc-----------
Q 003662 509 DMCHVCGDG-----ENLLLCNG--CPLAFHAACLDPLLIPESGWRCPNCRQGHS-----S-------SM----------- 558 (805)
Q Consensus 509 d~C~vCgdg-----G~LL~Cd~--Cp~afH~~CL~~~~vP~g~W~C~~C~~~~~-----~-------~~----------- 558 (805)
.-|.||.|+ .-|+.||+ |..+.|+.|+++..+|.|+|||..|..+.. + ++
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 358999885 46999998 999999999999999999999999976110 0 00
Q ss_pred -----cccc-ccCCC-------C-CCCCc-ccccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCCCCCCCccc
Q 003662 559 -----SRSV-DLKGG-------L-EAPGA-EVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKE 621 (805)
Q Consensus 559 -----s~pi-rl~r~-------~-~~~~~-e~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p~g~~~L~e 621 (805)
..|. |+..+ + ..|.+ -...|+||.+-+..... .-+..|.|. .|.++|||.|.+-.|+..-++
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA-~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~ 164 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKA-AKGACMTCNKSGCKQAFHVTCAQRAGLLCEEE 164 (900)
T ss_pred EEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCcccc-ccccceecccccchhhhhhhHhhhhccceecc
Confidence 0111 11100 0 00100 11369999986543221 245677887 689999999999888755444
Q ss_pred C-CCCCc-EEcCCchhhhHHhhhhhc
Q 003662 622 I-PKDKW-FCCDDCNRIHAALQDFVS 645 (805)
Q Consensus 622 i-P~g~W-FCc~~C~~i~~~Lqkll~ 645 (805)
. -.++- || .+|+..+.+|.+.-.
T Consensus 165 gn~~dNVKYC-GYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 165 GNISDNVKYC-GYCKYHFSKLKKSPA 189 (900)
T ss_pred ccccccceec-hhHHHHHHHhhcCCC
Confidence 2 22333 66 999999999887543
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.95 E-value=1.9e-10 Score=120.86 Aligned_cols=92 Identities=23% Similarity=0.634 Sum_probs=77.4
Q ss_pred CccccccccCC---------CceeecCCCCCcccccccCC-----CCCCCCCccccccCcCCcCCcccccccCCCCCCCC
Q 003662 507 SDDMCHVCGDG---------ENLLLCNGCPLAFHAACLDP-----LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 572 (805)
Q Consensus 507 ndd~C~vCgdg---------G~LL~Cd~Cp~afH~~CL~~-----~~vP~g~W~C~~C~~~~~~~~s~pirl~r~~~~~~ 572 (805)
-...|.+|-++ ..+++|..|..++|..|+.. ..+....|.|..|+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------- 316 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------- 316 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------
Confidence 34579999764 46999999999999999996 234567899999975
Q ss_pred cccccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 573 ~e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
|.||+++. .+..+++||.|+|.||..|. .|..+|.|.|.|-..|..
T Consensus 317 -----C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 317 -----CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRCRE 362 (381)
T ss_pred -----hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHHHH
Confidence 99999875 46889999999999999998 678999999999656744
No 4
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.49 E-value=3.3e-08 Score=110.30 Aligned_cols=109 Identities=28% Similarity=0.715 Sum_probs=75.6
Q ss_pred CCccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccccCcCC------------cCCcc---------
Q 003662 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH------------SSSMS--------- 559 (805)
Q Consensus 506 ~ndd~C~vCgdg-----G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~------------~~~~s--------- 559 (805)
+=|+.|.+|... ..+++||+|.-+.|+.|+++.-+|+|.|+|..|..+. .+.+.
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 356788888643 5699999999999999999999999999999996621 01110
Q ss_pred ------ccc-ccCCC-CCCCCc---------ccccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCCCCCCCcc
Q 003662 560 ------RSV-DLKGG-LEAPGA---------EVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLK 620 (805)
Q Consensus 560 ------~pi-rl~r~-~~~~~~---------e~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p~g~~~L~ 620 (805)
.|. .+..+ -.++-. ..-.|.+|++. .++.++|. .|-++||++|.+..|+-.+.
T Consensus 271 ~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~f~~~ 342 (669)
T COG5141 271 VICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGYFDLN 342 (669)
T ss_pred HhHHHhcchhccccccccchhhhhcccchhhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhhhcchhhhh
Confidence 111 00000 001111 11369999974 58899998 69999999999998876665
Q ss_pred cC
Q 003662 621 EI 622 (805)
Q Consensus 621 ei 622 (805)
.+
T Consensus 343 ~~ 344 (669)
T COG5141 343 IY 344 (669)
T ss_pred hh
Confidence 33
No 5
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.45 E-value=3.2e-07 Score=90.39 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=59.0
Q ss_pred EEEeeCCEEEEEEEEE-eecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 739 VILTVKSVVVSAGLLR-IFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lr-v~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
.|++.+|.||+||.|. +.+.+++||..||+.|+||++|.|..|+..++..++.+|+++|.+=+
T Consensus 43 ~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LT 106 (153)
T COG1246 43 TIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLT 106 (153)
T ss_pred eeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeee
Confidence 3667799999999999 99999999999999999999999999999999999999999987654
No 6
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.40 E-value=8.8e-08 Score=110.55 Aligned_cols=88 Identities=31% Similarity=0.935 Sum_probs=73.6
Q ss_pred CccccccccCC-----CceeecCCCCCcccccccCC---CCCCCCCccccccCcCCcCCcccccccCCCCCCCCcccccC
Q 003662 507 SDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDP---LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGC 578 (805)
Q Consensus 507 ndd~C~vCgdg-----G~LL~Cd~Cp~afH~~CL~~---~~vP~g~W~C~~C~~~~~~~~s~pirl~r~~~~~~~e~~~C 578 (805)
...+|.+|+.. |.|+.|..|...||.+|+.. ..+-.+.|.|+.|+. |
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------C 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------C 71 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee-------------------------e
Confidence 34678888654 56999999999999999995 223345599999986 8
Q ss_pred ccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEE
Q 003662 579 VICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 629 (805)
Q Consensus 579 ~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFC 629 (805)
..|+..+ +....++|+.|+-.||.+|..| +++.+|.+.|+|
T Consensus 72 e~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 72 EACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred eeccccC------CcccccccccccccccccccCC----ccccccCccccc
Confidence 8888544 5778899999999999999999 789999999999
No 7
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.39 E-value=1.6e-07 Score=114.86 Aligned_cols=106 Identities=31% Similarity=0.706 Sum_probs=73.8
Q ss_pred CCCccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccccCcCCcCC------------cc--------
Q 003662 505 GGSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSS------------MS-------- 559 (805)
Q Consensus 505 ~~ndd~C~vCgdg-----G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~~~~------------~s-------- 559 (805)
.+.|..|.||.++ ..++.||+|..++|+.|++.+-+|+|.|.|..|....++. +.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~ 295 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWA 295 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCcee
Confidence 4678899999876 4699999999999999999999999999999997722211 00
Q ss_pred -------------------cccccCCCCCCCCcccccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCCCCCCC
Q 003662 560 -------------------RSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCD 618 (805)
Q Consensus 560 -------------------~pirl~r~~~~~~~e~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p~g~~~ 618 (805)
+||...+.... ..-.-.|++|+..+ .+..++|. .|-.+||++|.+..|+..
T Consensus 296 Hv~caiwipev~F~nt~~~E~I~~i~~i~~-aRwkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~m 367 (1051)
T KOG0955|consen 296 HVVCAIWIPEVSFANTVFLEPIDSIENIPP-ARWKLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLYM 367 (1051)
T ss_pred eeehhhcccccccccchhhccccchhcCcH-hhhhceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCceE
Confidence 11100000000 00013699999753 36677776 577899999999888643
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.38 E-value=1.4e-06 Score=74.58 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=55.7
Q ss_pred eeCCEEEEEEEEEeecC-----ceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 742 TVKSVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 742 ~~~~~vvs~a~lrv~g~-----~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
+.+|+||+++.+++... ..+.|-.++|.++|||||+++.||+.+++.++.+|+.+|.+=
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~ 65 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLD 65 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEE
Confidence 68999999999999887 499999999999999999999999999999999999999874
No 9
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.25 E-value=5.6e-07 Score=103.89 Aligned_cols=51 Identities=33% Similarity=0.900 Sum_probs=42.8
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhh
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i 636 (805)
.|..|++.+ .| ..+|+||.|++.||+.||.|. ...+.+|.|.||| +.|..+
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C-~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFC-PECKIK 305 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCcccc-CCCeee
Confidence 699999865 34 678999999999999999983 1368899999999 999754
No 10
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.24 E-value=1.4e-06 Score=86.68 Aligned_cols=94 Identities=27% Similarity=0.686 Sum_probs=62.0
Q ss_pred cccccc---C---CCceeecCCCCCcccccccCCC--------CCCCCC--ccccccCcCCcCCcccccccCCCCCCCCc
Q 003662 510 MCHVCG---D---GENLLLCNGCPLAFHAACLDPL--------LIPESG--WRCPNCRQGHSSSMSRSVDLKGGLEAPGA 573 (805)
Q Consensus 510 ~C~vCg---d---gG~LL~Cd~Cp~afH~~CL~~~--------~vP~g~--W~C~~C~~~~~~~~s~pirl~r~~~~~~~ 573 (805)
.|.+|+ + -|.|+.|.+|-.+||..||++. .+.++. .+|.+|.. +.+.......
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig-----------~~~kKD~~aP 69 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG-----------IAHKKDPRAP 69 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC-----------hhhcccCCCC
Confidence 377774 2 3789999999999999999972 233333 58888864 1111111222
Q ss_pred ccccCccccCCCCCCccc--------------------------------CCCCeeccCCCCCccCcccCCCC
Q 003662 574 EVGGCVICRSHDFSAATF--------------------------------DDRTVIYCDQCEKEFHVGCLRKN 614 (805)
Q Consensus 574 e~~~C~vC~~~d~s~~~~--------------------------------~~~~LL~CdqCer~yHv~CL~p~ 614 (805)
..+.|..|++.+.+-..| .+..|..|..|.|+||+..|.+.
T Consensus 70 ~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 70 HHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 345677777655432222 24567899999999999999764
No 11
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.21 E-value=5.8e-07 Score=104.63 Aligned_cols=104 Identities=28% Similarity=0.683 Sum_probs=73.3
Q ss_pred CCccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccccCcCC---------cCCccccc----ccC--
Q 003662 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH---------SSSMSRSV----DLK-- 565 (805)
Q Consensus 506 ~ndd~C~vCgdg-----G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~---------~~~~s~pi----rl~-- 565 (805)
+++.+|.+|..+ .+|++||.|....|+.|+++..+|+|+|.|..|..+. .+++..|. .+.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 578899999653 6899999999999999999999999999999997621 11221121 000
Q ss_pred -CCCCCCCcc---------------------cccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCCCCCC
Q 003662 566 -GGLEAPGAE---------------------VGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLC 617 (805)
Q Consensus 566 -r~~~~~~~e---------------------~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p~g~~ 617 (805)
..++.|+.. .-.|.+|+.. .+..|+|. .|..+||+.|...+|+.
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~ 416 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLE 416 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCe
Confidence 011111110 1249999864 35677776 79999999999998874
No 12
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.14 E-value=1.1e-05 Score=73.41 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=53.7
Q ss_pred eEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
...+|++.+|+|||.+.++ .-++|..+.|.|+|||+|+|++||..+++.++. |++.|++.
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~ 103 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE 103 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE
Confidence 6788899999999999987 345699999999999999999999999999988 99999986
No 13
>smart00258 SAND SAND domain.
Probab=98.04 E-value=1.8e-06 Score=75.38 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=54.7
Q ss_pred eEE-EECCEEeeeeEeeCCcEEcCCC-CCccCccccccccCCcccCCCcccccccCCCchhHHHH
Q 003662 432 LTY-IVKGQRLRFGCKQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (805)
Q Consensus 432 v~Y-~~kGq~~l~G~k~G~gI~C~cC-~~~~Sps~FE~hAG~~~rr~Py~~I~l~~G~sL~~la~ 494 (805)
|++ .++|.++++.+++|...+|+.+ ++||||++||.+||+...++|..+|+ .+|.+|..+..
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHH
Confidence 555 5789999999999888899965 68999999999999988899999997 89999998864
No 14
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.03 E-value=1.8e-05 Score=68.29 Aligned_cols=58 Identities=19% Similarity=0.080 Sum_probs=50.3
Q ss_pred eEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCc
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV 794 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V 794 (805)
-+.+|++.++++||++.+.-.+. .+.|..|||.|+|||||+|+.||+.+.+.+...++
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~~i 60 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKSKKI 60 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCCCcE
Confidence 36788899999999999966665 89999999999999999999999999998866544
No 15
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.97 E-value=2.2e-06 Score=99.12 Aligned_cols=45 Identities=40% Similarity=1.178 Sum_probs=40.9
Q ss_pred ccccccccCCCce---eecCCCCCcccccccCC----CCCCCCCccccccCc
Q 003662 508 DDMCHVCGDGENL---LLCNGCPLAFHAACLDP----LLIPESGWRCPNCRQ 552 (805)
Q Consensus 508 dd~C~vCgdgG~L---L~Cd~Cp~afH~~CL~~----~~vP~g~W~C~~C~~ 552 (805)
.++|..|+..|.. +|||+||++||+.||.| ..+|.|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 5699999998876 99999999999999997 468999999999976
No 16
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.96 E-value=5.9e-06 Score=93.74 Aligned_cols=130 Identities=19% Similarity=0.344 Sum_probs=84.3
Q ss_pred CccccccccC-----CCceeecCCCCCcccccccCCCCCCCCCccccccCcC--CcCCcc----ccc------ccCCCCC
Q 003662 507 SDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQG--HSSSMS----RSV------DLKGGLE 569 (805)
Q Consensus 507 ndd~C~vCgd-----gG~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~--~~~~~s----~pi------rl~r~~~ 569 (805)
..-.|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|... .....+ +.+ ...++.+
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~w 161 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDW 161 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCccccccc
Confidence 4455677753 4568899999999999999987777788999988761 111111 111 1112221
Q ss_pred --CCCcccccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhhhHHhhh
Q 003662 570 --APGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQD 642 (805)
Q Consensus 570 --~~~~e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i~~~Lqk 642 (805)
.+..+. .|.+|...... ....||+|+.|..|||..|+++.--..+-.-|..+||| ..|.+-...+..
T Consensus 162 D~~~~~n~-qc~vC~~g~~~----~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r 230 (464)
T KOG4323|consen 162 DSGHKVNL-QCSVCYCGGPG----AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPR 230 (464)
T ss_pred Cccccccc-eeeeeecCCcC----ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhccc
Confidence 122233 38899865422 34589999999999999999875433344457889999 677655444333
No 17
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.94 E-value=5.2e-06 Score=98.58 Aligned_cols=88 Identities=33% Similarity=0.793 Sum_probs=66.9
Q ss_pred CCCCcccccccCC--CCCCCCCccccccCc-CCcCCcccccccCCCCCCCCcccccCccccCCCCCCcccCCCCeeccCC
Q 003662 525 GCPLAFHAACLDP--LLIPESGWRCPNCRQ-GHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ 601 (805)
Q Consensus 525 ~Cp~afH~~CL~~--~~vP~g~W~C~~C~~-~~~~~~s~pirl~r~~~~~~~e~~~C~vC~~~d~s~~~~~~~~LL~Cdq 601 (805)
.|+|+||..|+.| ...|+++|.|+.|.. ..+....+ ......+...|.+|.. .++++.|+.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~-------~~~~~~~~e~c~ic~~---------~g~~l~c~t 64 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKD-------DDWDDAEQEACRICAD---------GGELLWCDT 64 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccccccc-------CCcchhhhhhhhhhcC---------CCcEEEecc
Confidence 4899999999997 455689999999965 11111100 0022345678999984 578999999
Q ss_pred CCCccCcccCCCCCCCCcccCCCCCcEEcCCc
Q 003662 602 CEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (805)
Q Consensus 602 Cer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C 633 (805)
|..+||..|+.+ ++...|.++|.| +-|
T Consensus 65 C~~s~h~~cl~~----pl~~~p~~~~~c-~Rc 91 (696)
T KOG0383|consen 65 CPASFHASCLGP----PLTPQPNGEFIC-PRC 91 (696)
T ss_pred ccHHHHHHccCC----CCCcCCccceee-eee
Confidence 999999999988 788899888998 577
No 18
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.93 E-value=4.4e-05 Score=59.71 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=55.1
Q ss_pred EEEeeCCEEEEEEEEEeec--CceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g--~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+++..++++||.+.+.... ...+++-.++|.++|||+|+++.||..+.+.+...|.++++|
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4566789999999988866 578999999999999999999999999999999999999876
No 19
>PRK07922 N-acetylglutamate synthase; Validated
Probab=97.89 E-value=3.5e-05 Score=76.84 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=56.7
Q ss_pred EEEe-eCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~-~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+|++ .++++||.+.+.+...+.++|-.+++.++|||+|+|+.||..+++.++.+|++++.+
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~ 109 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFV 109 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4666 899999999999888889999999999999999999999999999999999999865
No 20
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.89 E-value=2.7e-06 Score=68.48 Aligned_cols=48 Identities=35% Similarity=1.019 Sum_probs=36.6
Q ss_pred CccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCch
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (805)
Q Consensus 578 C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~ 634 (805)
|.+|++.+ +++.+|.|+.|.++||..|+.+.. ...+.+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEEC-cCCc
Confidence 78898743 578999999999999999998732 122444569999 7775
No 21
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.88 E-value=3.1e-06 Score=89.26 Aligned_cols=46 Identities=35% Similarity=1.007 Sum_probs=39.0
Q ss_pred CccccccccCC---CceeecCCCCCcccccccCC--CCCCCCCccccccCc
Q 003662 507 SDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgdg---G~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
....|.+||.. .+||+||.|++.||.+||.| ...|+|.|.|..|..
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 45678888754 57999999999999999998 457899999999953
No 22
>PRK07757 acetyltransferase; Provisional
Probab=97.86 E-value=5.2e-05 Score=72.76 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=55.9
Q ss_pred EEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+++..+|++||.+.+.+.+.+.+++-.|++.|+|||+|+++.|+..+++.+..+|+.++.+
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~ 104 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFA 104 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3456789999999999999999999999999999999999999999999999999998754
No 23
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=97.86 E-value=6.4e-05 Score=71.98 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=53.5
Q ss_pred EEEEEee--CCEEEEEEEEEeec------CceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 737 YSVILTV--KSVVVSAGLLRIFG------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 737 Yt~vL~~--~~~vvs~a~lrv~g------~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
|.+|.+. +++||+.+.+++.. .+++.+--+++.++|||||+|+.|+..+++.+..+|+++|+|-.
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~ 126 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDC 126 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4445554 68999999886432 34567777999999999999999999999999999999999854
No 24
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=97.85 E-value=4.8e-05 Score=71.78 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=54.0
Q ss_pred EEEEeeCCEEEEEEEEEee-----cCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 738 SVILTVKSVVVSAGLLRIF-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 738 t~vL~~~~~vvs~a~lrv~-----g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
.+|++.++++||.+.+++. ....++|--+++.|+|||||+|+.||..+++.++..|...+.|=
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~ 116 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELS 116 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3567889999999998864 22357888899999999999999999999999999999988763
No 25
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.85 E-value=4.1e-06 Score=88.82 Aligned_cols=93 Identities=22% Similarity=0.460 Sum_probs=62.8
Q ss_pred ECCEEeeeeEeeCCcEEcCCCCCccCccccccccCCcccCCCcccccccCCCchhHHHHHhhhcCCCCCCCCcccccccc
Q 003662 436 VKGQRLRFGCKQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCG 515 (805)
Q Consensus 436 ~kGq~~l~G~k~G~gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I~l~~G~sL~~la~~l~~~~~~~~~~ndd~C~vCg 515 (805)
.+||--...-+.-+.|.|..|....+|+..+..-.+..--+.|. ..--+...|.||+
T Consensus 265 ~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~-----------------------W~C~~C~lC~IC~ 321 (381)
T KOG1512|consen 265 WDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYF-----------------------WKCSSCELCRICL 321 (381)
T ss_pred hcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcc-----------------------hhhcccHhhhccC
Confidence 34543333334557899999988888776654321111001111 1112456799998
Q ss_pred CC---CceeecCCCCCcccccccCCCCCCCCCcccc-ccC
Q 003662 516 DG---ENLLLCNGCPLAFHAACLDPLLIPESGWRCP-NCR 551 (805)
Q Consensus 516 dg---G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~-~C~ 551 (805)
.. .++++||.|+++||++|.++..+|.|.|.|. .|.
T Consensus 322 ~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 322 GPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred CcccchheeccccccCCCCccccccccccCccchhhhHHH
Confidence 74 6899999999999999999999999999997 353
No 26
>PRK03624 putative acetyltransferase; Provisional
Probab=97.83 E-value=5.3e-05 Score=70.08 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=54.2
Q ss_pred EEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
+.+|+..++++||.+.+...+ +.+.+..+++.++|||||+++.|+..++..+..+|++++.+=
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~ 108 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQ 108 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 456677889999999887644 456788899999999999999999999999999999998763
No 27
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.79 E-value=9e-06 Score=94.40 Aligned_cols=103 Identities=26% Similarity=0.611 Sum_probs=71.6
Q ss_pred cccccccc---CCCceeecCCCCCcccccccCC--CCCCCCCccccccCcCCcCCccccc---ccC--CCCCCCCccccc
Q 003662 508 DDMCHVCG---DGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQGHSSSMSRSV---DLK--GGLEAPGAEVGG 577 (805)
Q Consensus 508 dd~C~vCg---dgG~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~~~~~~~s~pi---rl~--r~~~~~~~e~~~ 577 (805)
.-.|..|+ |...+++|+.|+.+||.+|..| ..++.|.|+|+.|..+.+....-|- ++. .....++.....
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~ 147 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSY 147 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCccccccccccc
Confidence 34566665 5567999999999999999998 6799999999999775544432222 221 233344444567
Q ss_pred CccccCCCCCCcccCCCCeeccCCCCCccCcccCCC
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (805)
Q Consensus 578 C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p 613 (805)
|.+|....... +.-.++.|++|.+|-|..|..-
T Consensus 148 cPvc~~~Y~~~---e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 148 CPVCLIVYQDS---ESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred CchHHHhhhhc---cchhhHHHHHhcccccCCCCcc
Confidence 88887653221 1233589999999999999754
No 28
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PHA00673 acetyltransferase domain containing protein
Probab=97.74 E-value=0.00013 Score=72.59 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=61.6
Q ss_pred CceEEEEEeeCCEEEEEEEEEe------ecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEeccCCC
Q 003662 734 GGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPACLP 804 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv------~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~~~ 804 (805)
..-.-+|.+.+|+|||.+.+.+ .|...+.|-.|-+.+++||||+|++||..+|+.++..|..+|.|.|...
T Consensus 53 p~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~ 129 (154)
T PHA00673 53 GVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTE 129 (154)
T ss_pred CCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 3445567778999999999877 2457788999999999999999999999999999999999999988753
No 30
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.73 E-value=9e-06 Score=98.35 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=88.6
Q ss_pred CCccccccccCCCceeecCCCCCcccccccCC--CCCCCCCccccccCcCCcCCcc---ccc----ccCCCC--------
Q 003662 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQGHSSSMS---RSV----DLKGGL-------- 568 (805)
Q Consensus 506 ~ndd~C~vCgdgG~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~~~~~~~s---~pi----rl~r~~-------- 568 (805)
.-+|.|.+|.+.|.++||..||+.||..|..+ ..+|+..|.|..|....-.... -|. ..+|..
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 45789999999999999999999999999997 4689999999999862211111 011 111111
Q ss_pred CCCCcccccCccccCCCCCCcccCCCCeeccCC-CCCccCc-ccCCCCCCCCcccCCCCCcEEcCCchhhhHHhhhh
Q 003662 569 EAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ-CEKEFHV-GCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 643 (805)
Q Consensus 569 ~~~~~e~~~C~vC~~~d~s~~~~~~~~LL~Cdq-Cer~yHv-~CL~p~g~~~L~eiP~g~WFCc~~C~~i~~~Lqkl 643 (805)
..-+.....|.||+. +++++.|+. |.+.||. .|+...- --..++.+-|+| .+|-.-.++|.-.
T Consensus 422 r~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~ee~~rqM~lT~~ 486 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-REEIIRQMGLTEE 486 (1414)
T ss_pred cchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HHHHHHhccchhh
Confidence 111223346999984 578899997 9999999 9997421 124688999999 8886655544433
No 31
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.69 E-value=1.6e-05 Score=93.21 Aligned_cols=54 Identities=39% Similarity=0.978 Sum_probs=47.0
Q ss_pred cccccCccccCCCCCCcccCCCCeeccCCCCCc-cCcccCCCCCCCCcccCCCCCcEEcCCchhhh
Q 003662 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKE-FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 637 (805)
Q Consensus 573 ~e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~-yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i~ 637 (805)
.+...|.||...+ .++.||+||.|... ||++||+| +|.++|-+.||| .+|.-+.
T Consensus 213 ~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 213 QEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred cccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 3456899999886 46789999999998 99999999 899999999999 9997653
No 32
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.69 E-value=1.2e-05 Score=64.69 Aligned_cols=42 Identities=40% Similarity=1.170 Sum_probs=35.2
Q ss_pred ccccccC---CCceeecCCCCCcccccccCCC----CCCCCCccccccC
Q 003662 510 MCHVCGD---GENLLLCNGCPLAFHAACLDPL----LIPESGWRCPNCR 551 (805)
Q Consensus 510 ~C~vCgd---gG~LL~Cd~Cp~afH~~CL~~~----~vP~g~W~C~~C~ 551 (805)
+|.+|+. .+++|.|+.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778876 6889999999999999999984 3345699999995
No 33
>PTZ00330 acetyltransferase; Provisional
Probab=97.68 E-value=0.00016 Score=68.42 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=54.9
Q ss_pred EEEEEeeCCEEEEEEEEEee------cCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 737 YSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~lrv~------g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
+.++.+.+|++||.+.+.+. +...+++--+.+.++|||||+|+.||..+++.+...|+.+++|.+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~ 123 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC 123 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 34555688999999988653 223577888999999999999999999999999999999999875
No 34
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=97.68 E-value=0.00019 Score=66.49 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=67.3
Q ss_pred hhHHHHhhhhccccccccccCCccccccccccCCCcccCceEEEEEeeCCEEEEEEEEE-----eecC--ceeeeeeeee
Q 003662 696 LSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLR-----IFGR--EVAELPLVAT 768 (805)
Q Consensus 696 La~Al~If~EcF~PIv~~tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~~~~vvs~a~lr-----v~g~--~~AElp~vat 768 (805)
..+..+++.++|.+-.... ..+-|.++.-+ --+++|...+|+|||.+.+- +.|. ++|-|=-|||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP-----EIWEYFRNLYG----PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH-----HHHHHHHHHHH----TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch-----hhhhhhhcccC----cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4455667778885444211 22233222111 12678888899999977663 3465 3799999999
Q ss_pred eccccccChhhhHHHHHHHHHhcCCcceEEeccC
Q 003662 769 CREYQGKGCFQALFSCIERLLCSLNVENLVLPAC 802 (805)
Q Consensus 769 ~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~ 802 (805)
.|+|||||+++.||.++++.++.-|+.-++|=+.
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~~ 114 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFPS 114 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 9999999999999999999999999998886543
No 35
>PLN02825 amino-acid N-acetyltransferase
Probab=97.67 E-value=0.00011 Score=85.69 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=56.4
Q ss_pred EEEEeeCCEEEEEEEEEeec-CceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 738 SVILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 738 t~vL~~~~~vvs~a~lrv~g-~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
.+|++.+|+||++|.+..+. .+.|||=-||+.|+|||+|+|++||+.+|+.++.+|+++|.|
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~L 471 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFL 471 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 45789999999999887665 468999999999999999999999999999999999999976
No 36
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.66 E-value=0.00014 Score=77.66 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=57.9
Q ss_pred ceEEEEEeeCCEEEEEEEEEee-cCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 735 GMYSVILTVKSVVVSAGLLRIF-GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 735 GfYt~vL~~~~~vvs~a~lrv~-g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
+.+.++++.+|++||.+.+.+. +...|||--++|.|+|||||+|+.||..+++.+..+|++++.+-+
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~ 224 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIA 224 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeeh
Confidence 4455677789999999998653 445799999999999999999999999999999999999987754
No 37
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=97.63 E-value=0.00017 Score=72.78 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=57.8
Q ss_pred cCceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 733 FGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 733 F~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
+...+.++.+.+|++||.+.++..+...+++-.+++.++|||||+|+.|+..+++.+..+|.+++++-
T Consensus 99 ~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~ 166 (194)
T PRK10975 99 FDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVA 166 (194)
T ss_pred cCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 33344444556789999999988776778999999999999999999999999999999999999764
No 39
>PRK10314 putative acyltransferase; Provisional
Probab=97.63 E-value=0.00017 Score=71.04 Aligned_cols=63 Identities=14% Similarity=-0.003 Sum_probs=52.2
Q ss_pred EEEeeCCEEEEEEEEEeecC--ceeeeeeeeeeccccccChhhhHHHHHHHHHhcC-CcceEEecc
Q 003662 739 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~--~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l-~V~~lVlPA 801 (805)
+++..++++||.|.++..+. ..++|--|||.++|||||+|++||..+++.++.. +...+.|.|
T Consensus 51 ~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a 116 (153)
T PRK10314 51 ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA 116 (153)
T ss_pred EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh
Confidence 34456899999999887543 3578999999999999999999999998888775 778888765
No 40
>PHA01807 hypothetical protein
Probab=97.60 E-value=0.00016 Score=71.82 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=51.6
Q ss_pred eEEEEEeeCCEEEEEEEEEeecC----ceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~----~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
-+.+|++.+|++||.+.+..... .+.+|--|.+.|+|||+|+|+.||..+++.++..|+..|+|
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l 120 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAF 120 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 34466778999999998865432 22333336899999999999999999999999999999987
No 41
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.58 E-value=5.1e-06 Score=74.36 Aligned_cols=62 Identities=29% Similarity=0.319 Sum_probs=50.1
Q ss_pred eEE-EECCEEeeeeE-eeCCcEEcCC-CCCccCccccccccCCcccCCCcccccccCCCchhHHHH
Q 003662 432 LTY-IVKGQRLRFGC-KQGNGIVCDC-CNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (805)
Q Consensus 432 v~Y-~~kGq~~l~G~-k~G~gI~C~c-C~~~~Sps~FE~hAG~~~rr~Py~~I~l~~G~sL~~la~ 494 (805)
|++ .++|.++++.+ ++|...+|+. -+.||||++||.|||+...++|+.+|+ .+|.||..+..
T Consensus 13 VtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr-~~g~~L~~li~ 77 (82)
T PF01342_consen 13 VTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIR-CGGEPLGKLIE 77 (82)
T ss_dssp EEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSE-ETTEEHHHHHH
T ss_pred eEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEE-ECCEEHHHHHh
Confidence 666 47889998888 7777777884 378999999999999999999999998 59999988763
No 42
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=97.53 E-value=0.00032 Score=70.79 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=56.0
Q ss_pred EEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
++++.+|++||.+.++......+++=.+++.++|||||+|+.|+.++++.+..+|+.+|.+..
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v 164 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVAT 164 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 344678999999999877666789999999999999999999999999999999999998864
No 43
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=97.53 E-value=0.00037 Score=63.87 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=53.7
Q ss_pred EEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
+.+++..++++||.+.+++-. ..+.+-.++|.++|||||+++.|+.++++.+...|..++++-
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~ 94 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLE 94 (131)
T ss_pred eEEEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 334556789999999988744 456788899999999999999999999999999999999873
No 44
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=97.46 E-value=0.00054 Score=65.44 Aligned_cols=66 Identities=24% Similarity=0.217 Sum_probs=56.4
Q ss_pred CceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
.+++..+++.+|++|+.+.++..... +++-.|++.++|||||+|+.|+..+++.+..+|+.++.+-
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~ 103 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLE 103 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 46666677789999999999876654 5677889999999999999999999999999999988774
No 45
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.44 E-value=6.7e-05 Score=89.40 Aligned_cols=47 Identities=40% Similarity=1.062 Sum_probs=41.1
Q ss_pred CCccccccccCCCceeecCCCCCcccccccCC--CCCCCCCccccccCc
Q 003662 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 506 ~ndd~C~vCgdgG~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
.+...|.+|+++|++++||.|+.+||..|+++ ...|.+.|.|+.|..
T Consensus 45 ~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 45 AEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 35578999999999999999999999999997 456677899999954
No 46
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=97.43 E-value=0.00042 Score=76.90 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=56.9
Q ss_pred ccCceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 732 EFGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 732 dF~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
+..--|++++..+|+||++|.+ .|. .|.-||+.++|||+|+|+.||+.+++.+..+|+.++.|=+
T Consensus 27 d~~~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~T 91 (332)
T TIGR00124 27 DAPLEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFT 91 (332)
T ss_pred cCCCCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4445788889999999999987 353 4889999999999999999999999999999999998754
No 47
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=97.40 E-value=0.0004 Score=79.25 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=55.1
Q ss_pred EEEeeCCEEEEEEEEEeec-CceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g-~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+|++.++++|+++.+..+. ...||+-.+++.|+|||||+|+.||+.+|+.+...|.++|.+
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v 386 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFV 386 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3668899999999998874 458999999999999999999999999999999999998754
No 48
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=97.38 E-value=0.00042 Score=82.57 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=56.7
Q ss_pred EEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+|++.+|+|||.+.+.+.....++|-.+++.|+|||||+|+.||+.+++.++..|++++.|
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l 566 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFV 566 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 5778899999999999887778999999999999999999999999999999999999865
No 49
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.36 E-value=0.00046 Score=75.46 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=51.0
Q ss_pred EEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
.|.+.+++|||+|.+.- ++|..|||.|+|||||+|+.||..+|+.++..|++++.|-+
T Consensus 9 ~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t 66 (297)
T cd02169 9 GIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFT 66 (297)
T ss_pred EEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 34567799999998742 46889999999999999999999999999999999988865
No 50
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=97.28 E-value=0.0011 Score=63.64 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=53.0
Q ss_pred ceEEEEEeeCCEEEEEEEEEee----cCceeeeeeeeeeccccccChhhhHHHHHHHHHhc-CCcceEEec
Q 003662 735 GMYSVILTVKSVVVSAGLLRIF----GREVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLP 800 (805)
Q Consensus 735 GfYt~vL~~~~~vvs~a~lrv~----g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~-l~V~~lVlP 800 (805)
+.+.+|.+.+|++||.+.+... ....+|+- +++.++|||||+++.|++.+.+.+.. +|..+++|-
T Consensus 50 ~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~ 119 (162)
T PRK10140 50 GIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELT 119 (162)
T ss_pred CcEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEE
Confidence 3466777889999999988753 23456664 89999999999999999999999888 899988764
No 51
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.25 E-value=0.00012 Score=77.09 Aligned_cols=45 Identities=38% Similarity=1.063 Sum_probs=37.6
Q ss_pred cCccccCCCCCCcccCCCCeeccC--CCCC-ccCcccCCCCCCCCcccCCCCCcEEcCCchhh
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCD--QCEK-EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~Cd--qCer-~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i 636 (805)
+| +|++. .-+.|+.|| .|++ |||..|. .|++.|+|.||| ++|+..
T Consensus 223 YC-fCqqv-------SyGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~~ 270 (271)
T COG5034 223 YC-FCQQV-------SYGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKKA 270 (271)
T ss_pred EE-Eeccc-------ccccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHhc
Confidence 45 57765 357899999 7997 9999999 689999999999 999753
No 52
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.14 E-value=0.00017 Score=77.94 Aligned_cols=43 Identities=28% Similarity=0.787 Sum_probs=38.7
Q ss_pred cccccccCCCceeecCC--CC-CcccccccCCCCCCCCCccccccCc
Q 003662 509 DMCHVCGDGENLLLCNG--CP-LAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 509 d~C~vCgdgG~LL~Cd~--Cp-~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
.+|. |...|+++-||. |+ .-||..|.++...|.|.|||+.|+.
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3455 678899999998 99 8999999999999999999999975
No 53
>PRK05279 N-acetylglutamate synthase; Validated
Probab=97.12 E-value=0.0013 Score=75.20 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=54.1
Q ss_pred EEEeeCCEEEEEEEEEeec-CceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g-~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+|++.++++|+.+.+..+. ...++|--|++.|+|||||+|++||..+++.++..|+.++.+
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l 398 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFV 398 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4678899999998877653 468999999999999999999999999999999999998854
No 54
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.11 E-value=0.0016 Score=64.07 Aligned_cols=63 Identities=17% Similarity=0.036 Sum_probs=51.8
Q ss_pred EEEEEe-eCCEEEEEEEEE--eecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 737 YSVILT-VKSVVVSAGLLR--IFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 737 Yt~vL~-~~~~vvs~a~lr--v~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+.+|.+ .+|++||.+.+. -...+.+.+-.+|+.++|||||+|+.|+..+++.+...++.++.+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~ 105 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLET 105 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 455666 578999987653 244457888899999999999999999999999999999888765
No 55
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.09 E-value=0.0015 Score=69.70 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=53.7
Q ss_pred CceEEEEEeeCCEEEEEEEEEeecC--ceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 734 GGMYSVILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv~g~--~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
.++|.++-..+|++||.+.+++... .++++-.+++.++|||||+|++||..+++.+...|+.++.+-
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~ 266 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLY 266 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3555443323789999887777543 368888899999999999999999999999999999987763
No 56
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.06 E-value=0.00021 Score=77.28 Aligned_cols=37 Identities=41% Similarity=0.983 Sum_probs=32.1
Q ss_pred CCCCeeccCC--CC-CccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 592 DDRTVIYCDQ--CE-KEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 592 ~~~~LL~Cdq--Ce-r~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
..+.|+.||. |+ .|||..|. .|+..|.|.||| +.|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 3578999997 99 99999999 678899999999 68854
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.95 E-value=0.00029 Score=83.07 Aligned_cols=46 Identities=37% Similarity=0.929 Sum_probs=39.3
Q ss_pred CccccccccCC---CceeecCCCCCc-ccccccCC--CCCCCCCccccccCc
Q 003662 507 SDDMCHVCGDG---ENLLLCNGCPLA-FHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgdg---G~LL~Cd~Cp~a-fH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
...-|.||+-. +-||+||+|..+ ||.+||+| .++|-+.|||+.|..
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 44569999753 569999999999 99999998 459999999999965
No 58
>PRK01346 hypothetical protein; Provisional
Probab=96.82 E-value=0.0035 Score=70.61 Aligned_cols=64 Identities=17% Similarity=0.052 Sum_probs=54.1
Q ss_pred EEEEeeCCEEEEEEEEEee------cC--ceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 738 SVILTVKSVVVSAGLLRIF------GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 738 t~vL~~~~~vvs~a~lrv~------g~--~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
++|...+|++||.+.+..+ |. ..+.|-.|||.|+|||||++++||..+++.++..|+..++|=+
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~ 120 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTA 120 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4666789999998886532 32 4789999999999999999999999999999999998877744
No 59
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.76 E-value=0.0006 Score=72.04 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=36.8
Q ss_pred cccccccC--CCceeecCC--CCC-cccccccCCCCCCCCCccccccCc
Q 003662 509 DMCHVCGD--GENLLLCNG--CPL-AFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 509 d~C~vCgd--gG~LL~Cd~--Cp~-afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
-.|. |.. -|+++-||+ |.+ .||..|.++...|.|.|||+.|+.
T Consensus 222 lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 222 LYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred eEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 3453 654 599999998 887 799999999999999999999974
No 60
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.71 E-value=0.0043 Score=66.16 Aligned_cols=55 Identities=9% Similarity=-0.040 Sum_probs=47.0
Q ss_pred eEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHh
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
.+.+|...++++||.+.+.......+++--|+|.|+|||||+|++||..+++.+.
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~ 100 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG 100 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc
Confidence 3456667899999999998876566788889999999999999999999998754
No 61
>PRK09831 putative acyltransferase; Provisional
Probab=96.53 E-value=0.0042 Score=59.81 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred EEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCc
Q 003662 738 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV 794 (805)
Q Consensus 738 t~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V 794 (805)
.+|+..+|++||.+.+.- +.+..+++.|+|||||+|++||+.+++.+..|.|
T Consensus 55 ~~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~l~v 106 (147)
T PRK09831 55 VRVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESELTV 106 (147)
T ss_pred eEEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhheEe
Confidence 345678999999887742 4577899999999999999999999998877544
No 62
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=96.50 E-value=0.0088 Score=58.27 Aligned_cols=54 Identities=30% Similarity=0.339 Sum_probs=45.4
Q ss_pred EEEEEEEEEe-ecCc----eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCc-ceEEe
Q 003662 746 VVVSAGLLRI-FGRE----VAELPLVATCREYQGKGCFQALFSCIERLLCSLNV-ENLVL 799 (805)
Q Consensus 746 ~vvs~a~lrv-~g~~----~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V-~~lVl 799 (805)
+++|....++ .|.. -++|-.||+.|+|||||+|++|+..+++.+..-+. +.++|
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L 131 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVL 131 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5888888854 4432 78999999999999999999999999999988886 66665
No 63
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=96.46 E-value=0.018 Score=55.02 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.3
Q ss_pred eCCEEEEEEEEEeec--CceeeeeeeeeeccccccChhhhHHHHHHHHH-hcCCcceEEec
Q 003662 743 VKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLP 800 (805)
Q Consensus 743 ~~~~vvs~a~lrv~g--~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l-~~l~V~~lVlP 800 (805)
.+|++||.+.++-.. ...|++-++ +.++||++|+|+.|+..+++.+ ..+|+++|.+-
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~-v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~ 117 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIY-VSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLE 117 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEE-EEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeE-EChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEE
Confidence 699999999888533 347787744 4499999999999999999999 99999998763
No 64
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=96.42 E-value=0.012 Score=58.62 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=51.3
Q ss_pred EEEEEeeCCEEEEEEEEEee--cCceeeeeeeeeeccccccChhhhHHHHHHHHHh-cCCcceEEecc
Q 003662 737 YSVILTVKSVVVSAGLLRIF--GREVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPA 801 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~lrv~--g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~-~l~V~~lVlPA 801 (805)
+.++++.+|++||.+.+... ...-+|+- +++.++|||+|+++.|+..+.+.+. .+|+++|++-.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v 124 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIV 124 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEE
Confidence 35566789999999987553 23467774 7899999999999999998888664 69999998854
No 65
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=96.40 E-value=0.0096 Score=70.32 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=52.9
Q ss_pred CceEEEEEee--CCEEEEEEEEEee------cCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 734 GGMYSVILTV--KSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 734 ~GfYt~vL~~--~~~vvs~a~lrv~------g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
.+.+.+|.+. +|+|||.+..-.+ +...+++--|++.++|||||+|++||..+++.++.+|+.++.|
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L 194 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDL 194 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 3445566664 7999999875322 2234788889999999999999999999999999999999876
No 66
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.38 E-value=0.0012 Score=74.97 Aligned_cols=47 Identities=36% Similarity=1.008 Sum_probs=40.7
Q ss_pred ccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCC----CcEEcCCc
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD----KWFCCDDC 633 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g----~WFCc~~C 633 (805)
..|.||++.. +...+++||.|...||.+||.| ||..+|+. .|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4699999864 5677899999999999999999 89999964 5999 888
No 67
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=96.34 E-value=0.021 Score=53.28 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=51.8
Q ss_pred eEEEEEe--eCCEEEEEEEEEee--cCceeeeeeeeeeccccccChhhhHHHHHHHHH-hcCCcceEEecc
Q 003662 736 MYSVILT--VKSVVVSAGLLRIF--GREVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPA 801 (805)
Q Consensus 736 fYt~vL~--~~~~vvs~a~lrv~--g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l-~~l~V~~lVlPA 801 (805)
+|.+++. .++++||...++.. ....|||- +.+.++|||+|++..++..+-+.+ ..+|+.++++..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~ 125 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATV 125 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEE
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 4444444 44589998888443 57899999 558889999999999999999888 799999998764
No 68
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.32 E-value=0.001 Score=50.82 Aligned_cols=34 Identities=32% Similarity=0.977 Sum_probs=20.5
Q ss_pred CceeecCCCCCcccccccCCCCCCCC-CccccccC
Q 003662 518 ENLLLCNGCPLAFHAACLDPLLIPES-GWRCPNCR 551 (805)
Q Consensus 518 G~LL~Cd~Cp~afH~~CL~~~~vP~g-~W~C~~C~ 551 (805)
..|+.|+.|.-++|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888876 89999884
No 69
>PRK13688 hypothetical protein; Provisional
Probab=96.30 E-value=0.011 Score=58.88 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=39.1
Q ss_pred EEeeCCEEEEEEEEEee----------cCceeeeeeeeeeccccccChhhhHHHHHHH
Q 003662 740 ILTVKSVVVSAGLLRIF----------GREVAELPLVATCREYQGKGCFQALFSCIER 787 (805)
Q Consensus 740 vL~~~~~vvs~a~lrv~----------g~~~AElp~vat~~~~r~qG~~r~L~~~iE~ 787 (805)
++..++++|+.+.+... ..+.++|--+++.++|||||+|++||+.+++
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~ 106 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS 106 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH
Confidence 34568999998887543 2467899999999999999999999987655
No 70
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.26 E-value=0.013 Score=64.27 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=56.0
Q ss_pred ceEEEEEee---CCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 735 GMYSVILTV---KSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 735 GfYt~vL~~---~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
..|++.+.. ++.+||.+.++..+ +.++|-.+++++.|||+|++++||..+++.++..|++++.|-
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~ 297 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLY 297 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 466666653 67899999998754 567999999999999999999999999999999999988873
No 71
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=96.24 E-value=0.028 Score=54.03 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=52.1
Q ss_pred cCceEEEEEeeCCEEEEEEEEEe------ecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcC-CcceEEe
Q 003662 733 FGGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVL 799 (805)
Q Consensus 733 F~GfYt~vL~~~~~vvs~a~lrv------~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l-~V~~lVl 799 (805)
-.+.+.+|...+|++|+.+.+.- .....+.+-.+++.++|||||+++.+|.++.+.+..- +++++++
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~ 118 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVL 118 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEE
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 35788999999999999887732 1344566888888999999999999999888776654 8999887
No 72
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=96.15 E-value=0.019 Score=57.48 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=46.6
Q ss_pred EEEEEEEEee---cCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 747 VVSAGLLRIF---GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 747 vvs~a~lrv~---g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
.|||..-+-. +..=++|--+|+.++|||||++++|+..+-+...+.|...+||-+
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeT 125 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLET 125 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 4776665552 233589999999999999999999999999999999999999853
No 73
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=95.93 E-value=0.024 Score=50.84 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEE
Q 003662 744 KSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLV 798 (805)
Q Consensus 744 ~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lV 798 (805)
+++.++.+.-.+.... ++|-.|.|.|+|||+|+++.|+.++-+.+..-|..-++
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l 59 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFL 59 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 3466666666676666 99999999999999999999999999888887765543
No 74
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=95.87 E-value=0.035 Score=53.00 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=49.6
Q ss_pred EEEeeCCEEEEEEEEEeec--CceeeeeeeeeeccccccChhhhHHHHHHHHHh-cCCcceEEecc
Q 003662 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g--~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~-~l~V~~lVlPA 801 (805)
++++.+|++||.+.+.... ...+++-+. +.+.+| ||+|+.++.++++.+. .+|+.++++-.
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v 117 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEV 117 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEE
Confidence 4446789999998887655 456777655 889999 9999999999999876 58999998754
No 75
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.86 E-value=0.0039 Score=61.67 Aligned_cols=27 Identities=44% Similarity=1.029 Sum_probs=24.3
Q ss_pred ccCcccCCCCCCCCcccCCCCCcEEcCCchhh
Q 003662 605 EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (805)
Q Consensus 605 ~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i 636 (805)
.||+.||+| +|+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 499999999 899999999999 899654
No 76
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=95.83 E-value=0.031 Score=56.06 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=51.0
Q ss_pred eEEEEEeeCCEEEEEEEEEeecC---ceeeeeeeeeeccccccChhhhHHHHHHHHHhc-CCcceEEeccC
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAC 802 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~---~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~-l~V~~lVlPA~ 802 (805)
+|.+++..++++||.+.|...-. ..|||= +.+.++|||||+++.++.++.+.+.. ||+++|++-..
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~ 146 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYM 146 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEee
Confidence 45555556789999988875432 346654 45789999999999999999998765 89999988653
No 77
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=95.69 E-value=0.017 Score=61.96 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=51.8
Q ss_pred EEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHH-HHHHhcCCcceEEe
Q 003662 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCI-ERLLCSLNVENLVL 799 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~i-E~~l~~l~V~~lVl 799 (805)
-+.-++.+|+||+.|..+-.+...|+|-.|.|.|+|||+||.-+||.++ +++|..=...-|..
T Consensus 178 ~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~ 241 (268)
T COG3393 178 RTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFV 241 (268)
T ss_pred eEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEE
Confidence 3445666779999999999999999999999999999999999999987 45555554544544
No 78
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.61 E-value=0.0055 Score=69.78 Aligned_cols=106 Identities=31% Similarity=0.678 Sum_probs=67.6
Q ss_pred cccccccc-----CCCceeecCCCCCcccccccCCC---CCCC-------CCccccccCcCCc---CC--------ccc-
Q 003662 508 DDMCHVCG-----DGENLLLCNGCPLAFHAACLDPL---LIPE-------SGWRCPNCRQGHS---SS--------MSR- 560 (805)
Q Consensus 508 dd~C~vCg-----dgG~LL~Cd~Cp~afH~~CL~~~---~vP~-------g~W~C~~C~~~~~---~~--------~s~- 560 (805)
-.+|.||- |.|+++-||.|+...|..|++.. .+|. .+|||.-|+.+.. ++ +.+
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKet 198 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKET 198 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCccccc
Confidence 34899993 46899999999999999999962 3443 4799999987321 11 000
Q ss_pred cc-c--------------cCCC-------CCCCCc---ccccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCC
Q 003662 561 SV-D--------------LKGG-------LEAPGA---EVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRK 613 (805)
Q Consensus 561 pi-r--------------l~r~-------~~~~~~---e~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p 613 (805)
.| + +..+ ...+.+ ....|.+|...-|.. -+..+.|| .|...||+.|.+.
T Consensus 199 DigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTCAQk 274 (707)
T KOG0957|consen 199 DIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTCAQK 274 (707)
T ss_pred chhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhHHhh
Confidence 00 0 0000 001111 123599998765442 34567888 7888999999988
Q ss_pred CCCC
Q 003662 614 NGLC 617 (805)
Q Consensus 614 ~g~~ 617 (805)
.|+.
T Consensus 275 ~GlL 278 (707)
T KOG0957|consen 275 LGLL 278 (707)
T ss_pred hcce
Confidence 7763
No 79
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.59 E-value=0.0029 Score=81.16 Aligned_cols=56 Identities=34% Similarity=0.894 Sum_probs=47.7
Q ss_pred cccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhhhHHhh
Q 003662 575 VGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQ 641 (805)
Q Consensus 575 ~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i~~~Lq 641 (805)
...|.+|+..+ +...++.|+.|..+||..|+++ .+..+|.++||| +.|..-+...+
T Consensus 1108 ~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr 1163 (1404)
T KOG1245|consen 1108 NALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARR 1163 (1404)
T ss_pred hhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhh
Confidence 35799999764 4678999999999999999999 789999999999 99987765333
No 80
>PRK10562 putative acetyltransferase; Provisional
Probab=95.52 E-value=0.029 Score=53.65 Aligned_cols=50 Identities=6% Similarity=-0.072 Sum_probs=39.6
Q ss_pred EEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhc
Q 003662 738 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCS 791 (805)
Q Consensus 738 t~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~ 791 (805)
.+|+..+|++||.+.+.-. ..+-.+++.++|||||+|+.||..+++.+..
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~ 99 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPH 99 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCe
Confidence 3456677899998887432 3566789999999999999999999886543
No 81
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.49 E-value=0.0057 Score=71.92 Aligned_cols=51 Identities=31% Similarity=1.049 Sum_probs=41.9
Q ss_pred cccCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhh
Q 003662 575 VGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (805)
Q Consensus 575 ~~~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i 636 (805)
+++|-||... .++.+..|+.|| .|.-++|..|. .+.++|.|.||| ..|..-
T Consensus 5 VGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCesq 57 (900)
T KOG0956|consen 5 VGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCESQ 57 (900)
T ss_pred ccceeeecCc----CCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhhh
Confidence 4789999742 245688999999 79999999999 457899999999 888554
No 82
>PRK10514 putative acetyltransferase; Provisional
Probab=95.46 E-value=0.029 Score=53.15 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=38.1
Q ss_pred EEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhc
Q 003662 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCS 791 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~ 791 (805)
++++.++++||.+.++- .++-.+++.++|||||+|++|++.+++.+..
T Consensus 53 ~~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~ 100 (145)
T PRK10514 53 VAVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE 100 (145)
T ss_pred EEEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc
Confidence 34456889999887742 3455799999999999999999999987643
No 83
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.41 E-value=0.0093 Score=74.31 Aligned_cols=51 Identities=27% Similarity=0.817 Sum_probs=41.0
Q ss_pred ccccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 574 e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
+...|.||.+++- ..-..++.||.|..++|..|.. ..-+|+|.|+| ..|..
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~ 268 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQ 268 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhcc
Confidence 4567999998762 2347899999999999999994 45689999999 77743
No 84
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=95.40 E-value=0.034 Score=54.40 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred eEEEEEe--eCCEEEEEEEEEe-----ecCc-eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 736 MYSVILT--VKSVVVSAGLLRI-----FGRE-VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 736 fYt~vL~--~~~~vvs~a~lrv-----~g~~-~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
+|-+|++ ..++||++|+|-| ||-- -.-|-=|++.++||||++|+.|+..+-.+..+||+=++.|
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~L 124 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIIL 124 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEE
Confidence 7888888 5699999999987 2221 1234557899999999999999999999999999988877
No 85
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=95.37 E-value=0.066 Score=54.45 Aligned_cols=62 Identities=27% Similarity=0.238 Sum_probs=48.8
Q ss_pred EEEEeeCCEEEEEEEE-Ee-ec-Cc--eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 738 SVILTVKSVVVSAGLL-RI-FG-RE--VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 738 t~vL~~~~~vvs~a~l-rv-~g-~~--~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
.+|-+.+|+||+-.++ +| .| .. +-=|=-+|+.|+|||||+|++||...++.|+.+|...+|+
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~v 114 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVV 114 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEE
Confidence 4566788999985544 33 23 22 3345568999999999999999999999999999999887
No 86
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=95.18 E-value=0.092 Score=51.91 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEeeCCEEEEEEEEEeec--CceeeeeeeeeeccccccChhhhHHHHHHHHH-hcCCcceEEecc
Q 003662 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPA 801 (805)
Q Consensus 739 ~vL~~~~~vvs~a~lrv~g--~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l-~~l~V~~lVlPA 801 (805)
+++..+|++||.+.|+... ...||+=+ .+.++||||||++.++.++.+.+ ..+|+++|++-.
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v 134 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKC 134 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEE
Confidence 3334589999999887643 34688865 68999999999999998877765 568999988753
No 87
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.18 E-value=0.01 Score=58.76 Aligned_cols=24 Identities=46% Similarity=1.161 Sum_probs=21.9
Q ss_pred cccccccCC--CCCCCCCccccccCc
Q 003662 529 AFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 529 afH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
+||..||.| ..+|+|+|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 599999997 679999999999976
No 88
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=94.52 E-value=0.13 Score=51.02 Aligned_cols=97 Identities=22% Similarity=0.070 Sum_probs=64.6
Q ss_pred hhhhhhHHHHhh-hhccccccccccCCccccccccccCCCcccCceEEEEEeeCCEEEEEEEEEeecCceee--eeeeee
Q 003662 692 EKSLLSSATAIF-RECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREVAE--LPLVAT 768 (805)
Q Consensus 692 ~~s~La~Al~If-~EcF~PIv~~tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~~~~vvs~a~lrv~g~~~AE--lp~vat 768 (805)
-+.+|..=++|| .|.==|--+-.|.|++.+. .--++.+.+|++|+.|.|---+....+ |==|+|
T Consensus 18 ly~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~~~-------------~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v 84 (155)
T COG2153 18 LYELLKLRVDVFVVEQNCPYPELDGKDLLGDT-------------RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIV 84 (155)
T ss_pred HHHHHHhheeEEEEecCCCCcCcCCccccccc-------------ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEE
Confidence 556666666676 4444455556677775432 112223348999998888777777666 556899
Q ss_pred eccccccChhhhHHHHHHHHHhcCC-cceEEecc
Q 003662 769 CREYQGKGCFQALFSCIERLLCSLN-VENLVLPA 801 (805)
Q Consensus 769 ~~~~r~qG~~r~L~~~iE~~l~~l~-V~~lVlPA 801 (805)
.+++||+|+||.||...-+.+.... =+-++|-|
T Consensus 85 ~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~A 118 (155)
T COG2153 85 SPAARGQGLGQQLMEKALETAGREWPDKPVYLGA 118 (155)
T ss_pred CHhhhccchhHHHHHHHHHHHHhhCCCCCeEEeh
Confidence 9999999999999976655554443 44455544
No 89
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=94.51 E-value=0.04 Score=50.39 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=46.0
Q ss_pred EEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 740 vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
||--+|.+||=.+..= .+||+--.|-|+|||||+.+.++...-+.|..+|+.
T Consensus 3 llgpeG~PVSW~lmdq----tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P 54 (89)
T PF08444_consen 3 LLGPEGNPVSWSLMDQ----TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP 54 (89)
T ss_pred ccCCCCCEeEEEEecc----cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC
Confidence 5667899999877655 459999999999999999999999999999999975
No 90
>smart00258 SAND SAND domain.
Probab=94.13 E-value=0.057 Score=47.65 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.3
Q ss_pred CCeeeeCCCCCCCceeeehhhHhhhcc-ccCCCCCCcccccCCCcHHHHHHH
Q 003662 246 GGGYLCGCPLCNFSKVVSAHEFEQHAG-AKTRHPNNHIYLENGKPIYSIIQE 296 (805)
Q Consensus 246 ~~gi~C~C~~C~~~~v~s~~~FE~HAG-s~~~~p~~~I~lenG~sL~~v~~a 296 (805)
..|+.+.|..+++ +-+||.+||.||| .++|.=-..|.. ||.+|+.+||+
T Consensus 20 ~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 20 KCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 4599999999988 8999999999999 467777777754 68999988864
No 91
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.86 E-value=0.24 Score=50.41 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=56.5
Q ss_pred CCcccCceEEEEEeeC-CEEEEEEEEEeecCc-----eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEeccC
Q 003662 729 SGQEFGGMYSVILTVK-SVVVSAGLLRIFGRE-----VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAC 802 (805)
Q Consensus 729 ~~~dF~GfYt~vL~~~-~~vvs~a~lrv~g~~-----~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~ 802 (805)
....=.|||-+|++.+ |+|++-|.+.-|... ++|. .|=..+++||+|+|++|+.++-+.+..+||..|| +.|
T Consensus 45 ~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lv-a~I 122 (169)
T COG1247 45 SGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELV-AGI 122 (169)
T ss_pred HhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEE-EEE
Confidence 3344467888988755 999998888776554 4454 3557899999999999999999999999996665 344
Q ss_pred C
Q 003662 803 L 803 (805)
Q Consensus 803 ~ 803 (805)
.
T Consensus 123 ~ 123 (169)
T COG1247 123 E 123 (169)
T ss_pred c
Confidence 3
No 92
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=93.79 E-value=0.023 Score=65.26 Aligned_cols=43 Identities=37% Similarity=0.853 Sum_probs=35.8
Q ss_pred ccccccC-----CCceeecCCCCCcccccccCCC------CCCCCCccccccCc
Q 003662 510 MCHVCGD-----GENLLLCNGCPLAFHAACLDPL------LIPESGWRCPNCRQ 552 (805)
Q Consensus 510 ~C~vCgd-----gG~LL~Cd~Cp~afH~~CL~~~------~vP~g~W~C~~C~~ 552 (805)
.|.+|.- +.+||.|++|..-||+.|+.+. ..+...|+|..|..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 3889864 3589999999999999999972 34678899999976
No 93
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=93.61 E-value=0.28 Score=49.12 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=68.1
Q ss_pred hhhHHHHhhhhccccccccccCCccccccccccCCCcccCceEEEEEee-CCEEEEEEEEEe-----ecCceeeeeeeee
Q 003662 695 LLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTV-KSVVVSAGLLRI-----FGREVAELPLVAT 768 (805)
Q Consensus 695 ~La~Al~If~EcF~PIv~~tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~-~~~vvs~a~lrv-----~g~~~AElp~vat 768 (805)
+|=.-++.|+.+=+|... |.-+|-.+- |.+-.|.=.+-+.++. +++|||-|..-. .|.+.-=|-=+=+
T Consensus 19 rLikela~Fek~~~~v~~-te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV 92 (163)
T KOG3216|consen 19 RLIKELAEFEKLEDQVEA-TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYV 92 (163)
T ss_pred HHHHHHHHHHHhccchhh-chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEe
Confidence 445556678877777663 111221111 3444555556666664 889999888765 3444445556779
Q ss_pred eccccccChhhhHHHHHHHHHhcCCcceEE
Q 003662 769 CREYQGKGCFQALFSCIERLLCSLNVENLV 798 (805)
Q Consensus 769 ~~~~r~qG~~r~L~~~iE~~l~~l~V~~lV 798 (805)
+++|||+|+|+.|++.+=+.+..+|..++-
T Consensus 93 ~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~ 122 (163)
T KOG3216|consen 93 REQYRGKGIGSKLLKFVAEEADKLGTPRVE 122 (163)
T ss_pred cchhcccChHHHHHHHHHHHHHHcCCCcEE
Confidence 999999999999999999999999998864
No 94
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.58 E-value=0.026 Score=64.43 Aligned_cols=47 Identities=28% Similarity=0.855 Sum_probs=37.5
Q ss_pred ccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCc
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C 633 (805)
+.|.+|...+.+ +-..++.||.|+-..|..|. .+.-+|+|.||| ..|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CY------GI~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCY------GIQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhcc------cceecCcchhhh-hhh
Confidence 568899876532 34789999999999999998 345689999999 555
No 95
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.56 E-value=0.018 Score=74.17 Aligned_cols=47 Identities=40% Similarity=1.087 Sum_probs=40.8
Q ss_pred CCccccccccCC---CceeecCCCCCcccccccCC--CCCCCCCccccccCc
Q 003662 506 GSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 506 ~ndd~C~vCgdg---G~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
.....|.+|... ..++.|+.|.+.||..|+.| ..+|.++|+|+.|+.
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 355679999643 47999999999999999998 789999999999987
No 96
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=93.56 E-value=0.15 Score=60.19 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=47.1
Q ss_pred eCCEEEEEEEEEeecCcee-----------eeeeeee--------eccccccChhhhHHHHHHHHHhcCCcceEEec
Q 003662 743 VKSVVVSAGLLRIFGREVA-----------ELPLVAT--------CREYQGKGCFQALFSCIERLLCSLNVENLVLP 800 (805)
Q Consensus 743 ~~~~vvs~a~lrv~g~~~A-----------Elp~vat--------~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlP 800 (805)
.++.+||-..||....+.. ||-+.|+ .++|||||+|+.||..+|+.++..|++++.|-
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~ 497 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVI 497 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 5678888888887665433 6655554 58999999999999999999999999999874
No 97
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=93.44 E-value=0.24 Score=53.74 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=39.1
Q ss_pred CceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHH
Q 003662 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIER 787 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~ 787 (805)
.||=-+|| .+|+|||.|.=.......+||- |+|.++|||||+.+++.+++-.
T Consensus 164 ~G~Gf~i~-~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~ 215 (265)
T PF12746_consen 164 NGFGFCIL-HDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFIL 215 (265)
T ss_dssp H--EEEEE-ETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEE-ECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHH
Confidence 45433443 5899999888888888889985 7899999999999988776533
No 98
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=93.36 E-value=0.034 Score=66.16 Aligned_cols=51 Identities=31% Similarity=0.851 Sum_probs=41.8
Q ss_pred ccccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 574 e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
+.-.|-||+.+|.. ....|++||.|.--.|..|. .+.++|++.|+| ..|..
T Consensus 270 edviCDvCrspD~e----~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSE----EANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ccceeceecCCCcc----ccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhccc
Confidence 34479999988632 46789999999999999998 567899999999 66643
No 99
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=92.44 E-value=0.48 Score=41.92 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=45.8
Q ss_pred EEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 740 vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
.|..+|+.++....+. ..++-.|-=.-|.+++||||+++.||.++-+.++.-|.+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k 57 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK 57 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE
Confidence 4566788999999988 666777888889999999999999999999999988865
No 100
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=92.32 E-value=0.27 Score=50.78 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=54.3
Q ss_pred CceEEEEEeeCCEEEEEEEEEe---ecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 734 GGMYSVILTVKSVVVSAGLLRI---FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv---~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
.--|-+..+..+++|+-+.+|+ +|-.++=.-=|-+-+.|||+|+|+.|++.+|.+..+.+.+.++|
T Consensus 91 ~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmL 159 (202)
T KOG2488|consen 91 KLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVML 159 (202)
T ss_pred cceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhhee
Confidence 4456666676679999999998 77667666666777899999999999999999999888887766
No 101
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=92.30 E-value=0.11 Score=48.30 Aligned_cols=33 Identities=39% Similarity=0.854 Sum_probs=28.0
Q ss_pred ccCccccCCCCCCcccCCCCeeccCC--CCCccCcccCCCCCC
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 616 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~Cdq--Cer~yHv~CL~p~g~ 616 (805)
..|.+|++. .+..+.|.. |.+.||+.|....|+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 469999974 467899998 999999999987765
No 102
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=91.71 E-value=0.095 Score=47.18 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=37.9
Q ss_pred eEEEEe-----CCeeeeCCCCCCCceeeehhhHhhhccccCC-CCCCcccccCCCcHHHHHH
Q 003662 240 LDGIVN-----GGGYLCGCPLCNFSKVVSAHEFEQHAGAKTR-HPNNHIYLENGKPIYSIIQ 295 (805)
Q Consensus 240 l~G~i~-----~~gi~C~C~~C~~~~v~s~~~FE~HAGs~~~-~p~~~I~lenG~sL~~v~~ 295 (805)
++|++- ..|+...|-.+. .+-+||.+||.|||.... +=-..|.. +|.+|...|+
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 466665 345555666667 789999999999996543 24456777 8999998875
No 103
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=91.66 E-value=0.15 Score=42.14 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=28.2
Q ss_pred eeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 766 VATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 766 vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
+++.++|||||+|+.|+..+++.+...|+.
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~ 116 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS 116 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce
Confidence 999999999999999999999999988874
No 104
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=90.69 E-value=0.61 Score=43.55 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=52.0
Q ss_pred CceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 734 ~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
.|+|+ +..+|++++.++.--.|.++.-++=--|.+++||||+++.|+...-..++.-|.+
T Consensus 15 ~~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k 74 (99)
T COG2388 15 NGRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK 74 (99)
T ss_pred ceEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe
Confidence 45664 5788889998888888999999999999999999999999999988888887763
No 105
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=90.50 E-value=1.6 Score=42.59 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=46.7
Q ss_pred ceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 735 GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
-+|++ +-|+.+++|+.+.+.|. -|+|--+.+|+.=||+|+|..|++.+.+.+ =+|.+..|.+
T Consensus 39 ~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~ 100 (128)
T PF12568_consen 39 RLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLAD 100 (128)
T ss_dssp EEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--
T ss_pred eEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEec
Confidence 34444 57899999999999876 799999999999999999999999999988 4455555443
No 106
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=90.45 E-value=0.041 Score=42.06 Aligned_cols=33 Identities=33% Similarity=1.151 Sum_probs=17.4
Q ss_pred CCeeccCCCCCccCcccCCCCCCCCcccCCCC-CcEEcCCc
Q 003662 594 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD-KWFCCDDC 633 (805)
Q Consensus 594 ~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g-~WFCc~~C 633 (805)
+.|+.|+.|.-.+|..|.. +...|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4689999999999999984 3455555 7999 444
No 107
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=90.18 E-value=1.5 Score=42.24 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=50.2
Q ss_pred CceEEEEEeeCC--EEEEEEEEEeec----CceeeeeeeeeeccccccChhhhHHHHHHHHHh-cCCcceEEe
Q 003662 734 GGMYSVILTVKS--VVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVL 799 (805)
Q Consensus 734 ~GfYt~vL~~~~--~vvs~a~lrv~g----~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~-~l~V~~lVl 799 (805)
.+.|.+++..++ ++||...+.-.- .+.||+=..- .+.|+|||++...+.++-+.+- .+|+.++++
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~ 135 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEA 135 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEE
Confidence 466777777655 999988877544 5677776654 8999999999988888877654 499999986
No 108
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=89.40 E-value=2.3 Score=39.47 Aligned_cols=64 Identities=13% Similarity=-0.098 Sum_probs=53.9
Q ss_pred ceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 735 GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
...-.++..+|++||++..=+++. .+..-++|+.++|++.+.+..|+..+-+.+...|++.+=+
T Consensus 70 ~~~l~~~~~~g~~va~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~ 133 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGFRHGG-TLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDF 133 (142)
T ss_pred CEEEEEEEECCEEEEEEEEEEECC-EEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 356667778999999886666554 7779999999999999999999999999999999987644
No 109
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=88.40 E-value=0.96 Score=46.25 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=48.8
Q ss_pred EEEEe--eCCEEEEEEEE-EeecCc-eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEeccC
Q 003662 738 SVILT--VKSVVVSAGLL-RIFGRE-VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAC 802 (805)
Q Consensus 738 t~vL~--~~~~vvs~a~l-rv~g~~-~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~ 802 (805)
++||. -+.+||+-+.| ||--++ .--+-.|-+....||||+||.||...|...+..|.+.+.|-.+
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~ 125 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTD 125 (225)
T ss_pred eeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecc
Confidence 34444 45677775544 555554 3345677888999999999999999999999999999888654
No 110
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=82.54 E-value=1.7 Score=48.76 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=51.9
Q ss_pred ccCceEEEEEeeCCEEEEEEEEEee------cCc---eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEeccC
Q 003662 732 EFGGMYSVILTVKSVVVSAGLLRIF------GRE---VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAC 802 (805)
Q Consensus 732 dF~GfYt~vL~~~~~vvs~a~lrv~------g~~---~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~ 802 (805)
++.++| |+..+.+++ +.|+|. |.. .|-|-.||+-|+|||+|+-|+|+...-+..+.-|+.-.+|-++
T Consensus 37 ~~~n~~--vi~~nqkl~--s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~ 112 (389)
T COG4552 37 AEPNSY--VIYMNQKLA--SRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPF 112 (389)
T ss_pred cCCcce--EEeehhhhh--hcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccC
Confidence 344444 445566664 344443 444 4567789999999999999999999999999999999888777
Q ss_pred CC
Q 003662 803 LP 804 (805)
Q Consensus 803 ~~ 804 (805)
.+
T Consensus 113 s~ 114 (389)
T COG4552 113 SG 114 (389)
T ss_pred ch
Confidence 64
No 111
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=79.96 E-value=4.4 Score=44.73 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=51.3
Q ss_pred eEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 736 fYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
.++++..++++||+++.+ +|. -|+.||+++.+||-|.--.|+..+-.++-.+|.-+|.|
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFi 95 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFI 95 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEE
Confidence 455666677999999985 454 47899999999999999999999999999999999877
No 112
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=79.00 E-value=2.4 Score=48.97 Aligned_cols=59 Identities=25% Similarity=0.499 Sum_probs=37.9
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCC---cccCC---CCCcEEcCCchhhhH
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD---LKEIP---KDKWFCCDDCNRIHA 638 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~---L~eiP---~g~WFCc~~C~~i~~ 638 (805)
.|.+|.+-|+.. ++-..|.||-|..|.|..|.-..++.. ...-+ .+--|+|..|.+...
T Consensus 130 ~C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 130 MCCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred CccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 499999866443 445679999999999999964443321 01111 122466699977543
No 113
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=78.27 E-value=1.7 Score=45.37 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=20.2
Q ss_pred eeeeccccccChhhhHHHHHHHHHh
Q 003662 766 VATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 766 vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
|||.|++||+|||.+|+..+++.+.
T Consensus 96 IAvhP~~q~~G~Gs~lL~~l~~~~~ 120 (196)
T PF13718_consen 96 IAVHPDLQRMGYGSRLLQQLEQYAE 120 (196)
T ss_dssp EEE-CCC-SSSHHHHHHHHHHHT--
T ss_pred EEEChhhhcCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999883
No 114
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.38 E-value=2 Score=35.99 Aligned_cols=37 Identities=27% Similarity=0.739 Sum_probs=29.5
Q ss_pred ccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCC
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLC 617 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~ 617 (805)
..|.+|++.- .+++.++.|..|...||..|....|.+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g~C 42 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAGGC 42 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCCce
Confidence 3599999752 247889999999999999999776544
No 115
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=72.21 E-value=3.2 Score=48.55 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=40.4
Q ss_pred CCCCccccccccCCCceeecCCCCCcccccccCCCCCCCCCccccccCc
Q 003662 504 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 504 ~~~ndd~C~vCgdgG~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
.+.+.+.|.+|.+||.+++|+.+..++|-.|... ..|...|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567889999999999999999999999999865 35677788888866
No 116
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=71.90 E-value=2.7 Score=48.81 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=34.9
Q ss_pred EEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceE-Eecc
Q 003662 753 LRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL-VLPA 801 (805)
Q Consensus 753 lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~l-VlPA 801 (805)
|+|+|..+..=. ..-+||.||||+.||...|++++.-+-+++ |+..
T Consensus 446 lhvyg~~vpig~---~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSg 492 (515)
T COG1243 446 LHVYGSEVPIGK---REDEWQHRGYGRELLEEAERIAREEGAKKILVISG 492 (515)
T ss_pred hhcccccccccc---CcchhhcccHHHHHHHHHHHHHHhhccccEEEEec
Confidence 567786544322 257899999999999999999999887764 4443
No 117
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=71.21 E-value=2 Score=47.12 Aligned_cols=33 Identities=42% Similarity=0.725 Sum_probs=29.8
Q ss_pred CcEEcCCCCCccCccccccccCCcccCCCcccc
Q 003662 449 NGIVCDCCNKEISPSQFEAHAGMAARRQPYRHI 481 (805)
Q Consensus 449 ~gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I 481 (805)
-.|+|.|=+.-+||.+|-.|||...--+|.+||
T Consensus 251 v~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 251 VRIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 358999999999999999999998878998887
No 118
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=67.30 E-value=12 Score=38.49 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=51.5
Q ss_pred ceEEEEEeeCCEEEEEEEEEeecCceeeee-----eeeeeccccccChhhhHHHHHHHHHhcCCcceEEecc
Q 003662 735 GMYSVILTVKSVVVSAGLLRIFGREVAELP-----LVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (805)
Q Consensus 735 GfYt~vL~~~~~vvs~a~lrv~g~~~AElp-----~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA 801 (805)
-.|-+|-+ ++++||.-.||-.=.+ ..++ --+++|.-||+||++.++.-.-..++.||++.+.|-+
T Consensus 69 ~~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtc 138 (174)
T COG3981 69 STYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTC 138 (174)
T ss_pred eeEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 35667766 8999999999874322 1111 2468999999999999999999999999999988754
No 119
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=66.52 E-value=3.1 Score=52.45 Aligned_cols=44 Identities=23% Similarity=0.748 Sum_probs=38.0
Q ss_pred ccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCc
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C 633 (805)
..|.+|.. .+.+++|..|++.||..|..+ ++.+.|+..|-| .-|
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc 388 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVC 388 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhh
Confidence 36999984 578999999999999999988 788999999988 444
No 120
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=65.42 E-value=2.8 Score=38.20 Aligned_cols=45 Identities=36% Similarity=0.725 Sum_probs=27.6
Q ss_pred CccccccccC-----------CC---ceeecCCCCCcccccccCC-CCCCCCCccccccCc
Q 003662 507 SDDMCHVCGD-----------GE---NLLLCNGCPLAFHAACLDP-LLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgd-----------gG---~LL~Cd~Cp~afH~~CL~~-~~vP~g~W~C~~C~~ 552 (805)
+|+.|.||.. +| .++.+ .|...||..|+.. ..-....-.||.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 4777888753 22 23333 3889999999874 112233457888864
No 121
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=65.33 E-value=6.8 Score=43.12 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=42.2
Q ss_pred hhhHHhhccCCcCCceEEEeec--CCcceeEEEEeC------CeeeeCCCCCCCceeeehhhHhhhcccc-CCCCCCcc
Q 003662 213 TNVKKLLSTGILDGACVKYIST--SRERQLDGIVNG------GGYLCGCPLCNFSKVVSAHEFEQHAGAK-TRHPNNHI 282 (805)
Q Consensus 213 ~~~k~Ll~tg~leg~~V~y~~~--~~~~~l~G~i~~------~gi~C~C~~C~~~~v~s~~~FE~HAGs~-~~~p~~~I 282 (805)
++...-..+.+++.+|-.+-.. .+.....|++-. .-|.|-|. ...|||.+|=.|||.. .-||-.||
T Consensus 209 ~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 209 TNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred ccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 3444444455556666444322 223345555432 23999999 8899999999999964 56888887
No 122
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=61.09 E-value=5.5 Score=41.34 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=39.0
Q ss_pred EEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCC-cceEEec
Q 003662 753 LRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLP 800 (805)
Q Consensus 753 lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~-V~~lVlP 800 (805)
.|++|.++.-+-.++|.+.||.+|+|..|++.+.+.....+ .+++.|.
T Consensus 82 ~r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lH 130 (187)
T KOG3138|consen 82 KRLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLH 130 (187)
T ss_pred hhhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEE
Confidence 34444447788899999999999999999999999999888 5555443
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.97 E-value=5.2 Score=33.63 Aligned_cols=30 Identities=30% Similarity=0.974 Sum_probs=25.8
Q ss_pred ccccccccC----CCceeecCCCCCcccccccCC
Q 003662 508 DDMCHVCGD----GENLLLCNGCPLAFHAACLDP 537 (805)
Q Consensus 508 dd~C~vCgd----gG~LL~Cd~Cp~afH~~CL~~ 537 (805)
...|.+|++ +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999975 689999999999999999854
No 124
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=55.80 E-value=11 Score=38.67 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=32.1
Q ss_pred eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 760 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 760 ~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
+||+=|.|+|++.+|.|+++.+ .++--.|..|||.
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVP 119 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVP 119 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCC
Confidence 7999999999999999999976 6888899999986
No 125
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=54.75 E-value=21 Score=36.48 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=36.6
Q ss_pred EEe-eCCEEEEEEEEEeec-----CceeeeeeeeeeccccccChhhhHHHHHHHH
Q 003662 740 ILT-VKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIERL 788 (805)
Q Consensus 740 vL~-~~~~vvs~a~lrv~g-----~~~AElp~vat~~~~r~qG~~r~L~~~iE~~ 788 (805)
|.+ .+|+||+-.+-..+- ..=.-|-.||+...|||.|+++.||+.--+.
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rA 99 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRA 99 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHH
Confidence 445 678999977766544 1123566999999999999999999875554
No 126
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=53.73 E-value=6.8 Score=34.93 Aligned_cols=32 Identities=41% Similarity=0.974 Sum_probs=26.2
Q ss_pred cCccccCCCCCCcccCCCCeeccCC--CCCccCcccCCCCCC
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 616 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~Cdq--Cer~yHv~CL~p~g~ 616 (805)
.|.+|++. .+..+.|.. |.+.||+.|....+.
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 59999964 267889984 999999999987654
No 127
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=53.25 E-value=9.8 Score=42.24 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=58.2
Q ss_pred cccccc-CCCceeecCCCCCcccccccCCCCCCCCCccccccCcCCcCCcccccccCCCCCCCCcc-------cccCccc
Q 003662 510 MCHVCG-DGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAE-------VGGCVIC 581 (805)
Q Consensus 510 ~C~vCg-dgG~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~~~~~s~pirl~r~~~~~~~e-------~~~C~vC 581 (805)
.|-.|. +++....|-.|.-.+|..-........+.+.|.-|....++-.-.+.+- .+.....+ --.| .|
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~--~~~~n~~N~YNhNfqG~~C-~C 133 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLLED--KDAENSENLYNHNFQGLFC-KC 133 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccccccc--cccccchhhhhhhhcceeE-Ee
Confidence 466664 4457778888887778766665556678888877755222111111100 00001111 1134 45
Q ss_pred cCCCCCCcccCCCCeeccCCCCCccC-cccCCCC
Q 003662 582 RSHDFSAATFDDRTVIYCDQCEKEFH-VGCLRKN 614 (805)
Q Consensus 582 ~~~d~s~~~~~~~~LL~CdqCer~yH-v~CL~p~ 614 (805)
...+.+-.--.++.|++|--|+.||| -+|++..
T Consensus 134 d~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 134 DTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 55443211223688999999999999 8998754
No 128
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=51.41 E-value=8.9 Score=47.37 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=37.8
Q ss_pred ccCCccccccccccCCCcccCceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHh
Q 003662 714 CGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 714 tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
-+-||||+++-.- +...+| ..++|.=++|| ||.|++|++|+|++|+..+.+.+.
T Consensus 508 ~~GnlIp~~l~~~-~~~~~f-----------a~l~G~RIvRI-----------AvhPe~q~~GiGsrlL~~l~~~a~ 561 (758)
T COG1444 508 PRGNLIPDLLAKH-HRDPEF-----------AKLVGWRIVRI-----------AVHPELQRMGIGSRLLALLIEEAR 561 (758)
T ss_pred CCCcccHHHHHHh-hcchhh-----------cccceeeEEEE-----------EeCHHHHhcCHHHHHHHHHHHHHh
Confidence 4457787776421 112222 24555555665 999999999999999999999885
No 129
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=9.8 Score=43.01 Aligned_cols=43 Identities=33% Similarity=0.771 Sum_probs=28.6
Q ss_pred cccccccCC---CceeecCCCCCcccccccCCCCCCCCCccccccCc
Q 003662 509 DMCHVCGDG---ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 509 d~C~vCgdg---G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
+.|.||-+. |+.|.==-|.-.||..|.++..... .-+||.|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 599999753 5444335578899999999843221 335777764
No 130
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=47.65 E-value=54 Score=34.24 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=21.3
Q ss_pred eeeeeeeeccccccChhhhHHHHHHHHH
Q 003662 762 ELPLVATCREYQGKGCFQALFSCIERLL 789 (805)
Q Consensus 762 Elp~vat~~~~r~qG~~r~L~~~iE~~l 789 (805)
-|--|-|-|.|||+||||.|++.-=.+.
T Consensus 82 NLsCIl~lP~yQrkGyG~~LI~fSY~LS 109 (188)
T PF01853_consen 82 NLSCILTLPPYQRKGYGRFLIDFSYELS 109 (188)
T ss_dssp EESEEEE-GGGTTSSHHHHHHHHHHHHH
T ss_pred eEeehhhcchhhhcchhhhhhhhHHHHh
Confidence 4556889999999999999987644443
No 131
>PRK00756 acyltransferase NodA; Provisional
Probab=47.65 E-value=19 Score=36.93 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=32.0
Q ss_pred eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcc
Q 003662 760 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 760 ~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~ 795 (805)
+||+=|.|+||+.+|+|+...+ .++--.|..|||.
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVP 119 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVP 119 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCC
Confidence 7999999999999999999876 6888899999986
No 132
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=46.40 E-value=11 Score=38.18 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.6
Q ss_pred eeeeeeeccccccChhhhHHHHHHHHHhcC
Q 003662 763 LPLVATCREYQGKGCFQALFSCIERLLCSL 792 (805)
Q Consensus 763 lp~vat~~~~r~qG~~r~L~~~iE~~l~~l 792 (805)
+--|++.|+|||+|++..||+.+|+....-
T Consensus 72 vTAltVap~~Rrl~la~~lm~~led~~d~~ 101 (173)
T KOG3234|consen 72 VTALTVAPDYRRLGLAAKLMDTLEDVSDVD 101 (173)
T ss_pred EEEEEechhHHHHHHHHHHHHHHHHHHHhh
Confidence 344688899999999999999999987654
No 133
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=46.19 E-value=42 Score=31.41 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=36.9
Q ss_pred CCEEEEEEEEEeec--CceeeeeeeeeeccccccChhhhHHHHHHHHH
Q 003662 744 KSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL 789 (805)
Q Consensus 744 ~~~vvs~a~lrv~g--~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l 789 (805)
++...++|++.--+ .+++-|==.|+.+..|++|+++.|+++|-+..
T Consensus 16 ~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 16 SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 34466777775533 67888888999999999999999999998653
No 134
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=45.20 E-value=13 Score=38.02 Aligned_cols=57 Identities=21% Similarity=0.571 Sum_probs=35.7
Q ss_pred CccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCC-C-CcccCCCCCcEE-cCCchhhh
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGL-C-DLKEIPKDKWFC-CDDCNRIH 637 (805)
Q Consensus 578 C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~-~-~L~eiP~g~WFC-c~~C~~i~ 637 (805)
|.+|...+. ....+.|+.|..|..+||..||.+... + -.+.+-.+.+.- |..|..++
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 777864321 224578999999999999999976532 1 123444444421 36665554
No 135
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=5.6 Score=43.26 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=32.1
Q ss_pred CCCCccccccccCC-------Cce---eecCCCCCcccccccCCCCCCCCCccccccCc
Q 003662 504 TGGSDDMCHVCGDG-------ENL---LLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 504 ~~~ndd~C~vCgdg-------G~L---L~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
.+.+|..|.+|+.. +.+ ..=-.|...||.+|..-..+--..-.||.|+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHH
Confidence 45688999999853 111 11124889999999976433334457888875
No 136
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=44.42 E-value=9.6 Score=33.25 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=12.0
Q ss_pred cccccccC----CCc--eeecC--CCCCcccccccCC
Q 003662 509 DMCHVCGD----GEN--LLLCN--GCPLAFHAACLDP 537 (805)
Q Consensus 509 d~C~vCgd----gG~--LL~Cd--~Cp~afH~~CL~~ 537 (805)
..|.||.. .++ .+.|+ .|...||..||.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46888853 232 48897 7999999999973
No 137
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.70 E-value=12 Score=34.83 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=26.4
Q ss_pred CccccccccC-CCceeecCC--CCCcccccccCC
Q 003662 507 SDDMCHVCGD-GENLLLCNG--CPLAFHAACLDP 537 (805)
Q Consensus 507 ndd~C~vCgd-gG~LL~Cd~--Cp~afH~~CL~~ 537 (805)
....|.+|+. .|-.+-|.. |..+||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 4568999987 588999987 999999999864
No 138
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=42.41 E-value=7 Score=46.83 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=33.7
Q ss_pred CccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhhhHH
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAA 639 (805)
Q Consensus 578 C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i~~~ 639 (805)
|.+|... .-+-.|..++...|+.|...||..|++... -||+.|.++..+
T Consensus 514 Ce~Cq~~-~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------------~~CPrC~R~q~r 562 (580)
T KOG1829|consen 514 CELCQHN-DIIYPFETRNTRRCSTCLAVFHKKCLRRKS------------PCCPRCERRQKR 562 (580)
T ss_pred eeeccCC-CcccccccccceeHHHHHHHHHHHHHhccC------------CCCCchHHHHHH
Confidence 5555322 123456677889999999999999997522 236999887543
No 139
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=41.20 E-value=41 Score=37.21 Aligned_cols=28 Identities=32% Similarity=0.234 Sum_probs=22.6
Q ss_pred eeeeeeeccccccChhhhHHHHHHHHHh
Q 003662 763 LPLVATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 763 lp~vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
|--|-|-|.|||+|||+.|++.-=.+.+
T Consensus 158 LaCIltLPpyQrkGyG~~LI~fSYeLSr 185 (290)
T PLN03238 158 LACILTLPPYQRKGYGKFLISFAYELSK 185 (290)
T ss_pred EEEEEecChhhhccHhHhHHHHHhHHhh
Confidence 6678899999999999999976544433
No 140
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=40.79 E-value=42 Score=38.75 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred eCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHh
Q 003662 743 VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 743 ~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
+.|+.||...+..-|..++++||||+.. ..+.|+++++...|...+.
T Consensus 346 ~kG~~vG~~~i~~~g~~i~~v~lva~~~-v~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK10001 346 KKGQVVGTIDFQLNGKSIEQRPLIVMEN-VEEGGFFSRMWDFVMMKFH 392 (400)
T ss_pred cCCCEEEEEEEEECCEEEEEEEeEECCc-ccccCHHHHHHHHHHHHHH
Confidence 4589999999999999999999999865 5778999999988876553
No 141
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=40.24 E-value=57 Score=30.86 Aligned_cols=68 Identities=26% Similarity=0.549 Sum_probs=46.2
Q ss_pred ccccccceeccCCCCCCCceeEEEE--C--CEE----------eeeeE-eeCCcEEcCCCCCccCccccc-cccCCcccC
Q 003662 412 RDNDLHRLLFLPNGLPDGERLTYIV--K--GQR----------LRFGC-KQGNGIVCDCCNKEISPSQFE-AHAGMAARR 475 (805)
Q Consensus 412 rd~~lhkllf~~~gL~dg~~v~Y~~--k--Gq~----------~l~G~-k~G~gI~C~cC~~~~Sps~FE-~hAG~~~rr 475 (805)
.|..||+-.+. .+|.+|.+.+ + |.. --.|| ++|+.+.|.-|+..|+...+. ..+|+
T Consensus 3 ~Dgklh~y~y~----~~G~~vrff~i~~~dg~~~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGC---- 74 (102)
T PF10080_consen 3 KDGKLHRYAYT----DDGKEVRFFAIKKPDGSYRVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGC---- 74 (102)
T ss_pred cCCcEEEEEEc----CCCEEEEEEEEECCCCCEEEEEEeccccCCCceEEECCEEEEecCCCEEehhhcccccCCC----
Confidence 57788888885 5667777753 2 321 12344 568899999999999999888 66664
Q ss_pred CCcccccccCCC
Q 003662 476 QPYRHIYTSNGM 487 (805)
Q Consensus 476 ~Py~~I~l~~G~ 487 (805)
||+.--++-+|-
T Consensus 75 NP~P~~~~~~~~ 86 (102)
T PF10080_consen 75 NPIPLPYTVDGG 86 (102)
T ss_pred CccCCceEecCC
Confidence 566555554554
No 142
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=39.70 E-value=23 Score=37.05 Aligned_cols=36 Identities=39% Similarity=0.808 Sum_probs=28.2
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCCC
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p 613 (805)
.|.+|...+ -.-+|+...+..|..|...||..|...
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 488887652 344567778999999999999999963
No 143
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=39.47 E-value=3.8 Score=31.90 Aligned_cols=40 Identities=33% Similarity=0.821 Sum_probs=23.9
Q ss_pred cccccccCC----CceeecCCCCCcccccccCCCCCCCCCccccccC
Q 003662 509 DMCHVCGDG----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (805)
Q Consensus 509 d~C~vCgdg----G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~ 551 (805)
|.|.||.+. ...+... |.-.||..|+.... .....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~--~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWL--KRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHH--HHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHH--HhCCcCCccC
Confidence 468889653 3444444 99999999987511 1123777773
No 144
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=38.80 E-value=17 Score=31.76 Aligned_cols=34 Identities=32% Similarity=0.700 Sum_probs=12.7
Q ss_pred cCccccCCCCCCcccCCCCeeccC--CCCCccCcccCCC
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRK 613 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~Cd--qCer~yHv~CL~p 613 (805)
.|.||...-.. .+....+.|+ +|.+.||..||..
T Consensus 4 ~C~IC~~~~~~---~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRLD---DGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS-T---T-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEecC---CCCcCceEcCCcccCCHHHHHHHHH
Confidence 48999864321 1234568998 9999999999853
No 145
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=38.72 E-value=1.3e+02 Score=30.88 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=49.6
Q ss_pred ccCceEEEEEee--CCEEEE-----EEEEEeecCc--eeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceE
Q 003662 732 EFGGMYSVILTV--KSVVVS-----AGLLRIFGRE--VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL 797 (805)
Q Consensus 732 dF~GfYt~vL~~--~~~vvs-----~a~lrv~g~~--~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~l 797 (805)
+|.-.|.+-++. ++++|| -+.+||++.. ++||=|+-+...+|.+++.=.|+.+|=+-+..-||=.=
T Consensus 73 g~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 73 GWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp T--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred CCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 344445566653 577776 4678998875 89999999999999999999999999999988887553
No 146
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=38.60 E-value=16 Score=32.56 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=26.4
Q ss_pred CccccccccCC-CceeecCC--CCCcccccccCC
Q 003662 507 SDDMCHVCGDG-ENLLLCNG--CPLAFHAACLDP 537 (805)
Q Consensus 507 ndd~C~vCgdg-G~LL~Cd~--Cp~afH~~CL~~ 537 (805)
....|.+|+.. |-.+-|.. |.+.||..|..-
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 34579999998 99999965 999999999874
No 147
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=37.20 E-value=25 Score=31.11 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=20.5
Q ss_pred eeeeeccccccChhhhHHHHHHHH
Q 003662 765 LVATCREYQGKGCFQALFSCIERL 788 (805)
Q Consensus 765 ~vat~~~~r~qG~~r~L~~~iE~~ 788 (805)
-|=|.+.+||||+.++|++++-+-
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHh
Confidence 345789999999999999998764
No 148
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=36.69 E-value=52 Score=30.85 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=27.5
Q ss_pred CceeeeeeeeeeccccccChhhhHHHHHHHHH
Q 003662 758 REVAELPLVATCREYQGKGCFQALFSCIERLL 789 (805)
Q Consensus 758 ~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l 789 (805)
..++-|-=.|+.+..||+|+++.|+++|-+-.
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 35777777899999999999999999998754
No 149
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=36.40 E-value=37 Score=29.96 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCEEEEEEEEEeecCceeeeeeeeeec
Q 003662 744 KSVVVSAGLLRIFGREVAELPLVATCR 770 (805)
Q Consensus 744 ~~~vvs~a~lrv~g~~~AElp~vat~~ 770 (805)
.|++||...+.+-|..++++||+|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 489999999999999999999999865
No 150
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=35.85 E-value=2.5e+02 Score=30.13 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred hhhHHHHhhhhccccccccccCCccccccccccCCCcccCceEEEEEe-eCCEEEEEEEEEee-----------------
Q 003662 695 LLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILT-VKSVVVSAGLLRIF----------------- 756 (805)
Q Consensus 695 ~La~Al~If~EcF~PIv~~tg~DlI~~mVy~r~~~~~dF~GfYt~vL~-~~~~vvs~a~lrv~----------------- 756 (805)
.+..|..+=++-| ++.-|.++..+---+.++...|-.--|.+|.. .+|++||++.|.-.
T Consensus 18 ~~~~~~~lR~~VF---v~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~ 94 (241)
T TIGR03694 18 LLEEAFRLRYQVY---CEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSH 94 (241)
T ss_pred HHHHHHHHHHHHH---HHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhcc
Confidence 3555666556665 22223332111011334455555667777665 45899998887541
Q ss_pred -------------cCceeeeeeeeeecccccc-C---------------------------hhhhHHHHHHHHHhcCCcc
Q 003662 757 -------------GREVAELPLVATCREYQGK-G---------------------------CFQALFSCIERLLCSLNVE 795 (805)
Q Consensus 757 -------------g~~~AElp~vat~~~~r~q-G---------------------------~~r~L~~~iE~~l~~l~V~ 795 (805)
+.+++|+==.|+.++||++ | +...|+.++=+.+...||+
T Consensus 95 ~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~ 174 (241)
T TIGR03694 95 SLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGIT 174 (241)
T ss_pred ccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCc
Confidence 1357788778889999974 2 3466899999999999999
Q ss_pred eEEe
Q 003662 796 NLVL 799 (805)
Q Consensus 796 ~lVl 799 (805)
+++.
T Consensus 175 ~~~~ 178 (241)
T TIGR03694 175 HWYA 178 (241)
T ss_pred EEEE
Confidence 9865
No 151
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=34.27 E-value=64 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=40.5
Q ss_pred eCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHh
Q 003662 743 VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLC 790 (805)
Q Consensus 743 ~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~ 790 (805)
+.|++||-..+.+-|..++++||||+.. ..+-|++.+++..|...+.
T Consensus 353 ~kG~~VG~l~~~~~g~~i~~v~Lva~~~-V~~~~~~~~~~~~~~~~~~ 399 (403)
T PRK10793 353 QKNQVVGTINFQLDGKTIEQRPLVVLQE-IPEGNFFGKIIDYIKLMFH 399 (403)
T ss_pred cCCCEEEEEEEEECCEEEEEEEeEEccc-cccccHHHHHHHHHHHHHH
Confidence 4589999999999999999999999865 6778999999998887664
No 152
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.50 E-value=27 Score=41.42 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCccccccccCCCceeecCCCCCcccccccCCC-CC--CCCCccccccCc
Q 003662 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL-LI--PESGWRCPNCRQ 552 (805)
Q Consensus 506 ~ndd~C~vCgdgG~LL~Cd~Cp~afH~~CL~~~-~v--P~g~W~C~~C~~ 552 (805)
..+..|..|.-.|.-+.|+.|-+.||..|+.+. .. -+..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345679999999999999999999999999982 23 246899999976
No 153
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=33.19 E-value=29 Score=35.27 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=34.4
Q ss_pred EEEeecCceeeeeeeeeeccccccChhhhHHHH-HHHHHhcCCcceEEeccCC
Q 003662 752 LLRIFGREVAELPLVATCREYQGKGCFQALFSC-IERLLCSLNVENLVLPACL 803 (805)
Q Consensus 752 ~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~-iE~~l~~l~V~~lVlPA~~ 803 (805)
..|+-|.. +-|-.||+.++||.||++..|+.. |..+-..-=|.|.+|=|-+
T Consensus 94 kh~s~g~n-i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~ 145 (190)
T KOG4144|consen 94 KHRSGGHN-IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHD 145 (190)
T ss_pred hhhcCCcc-eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecC
Confidence 34444444 667889999999999999999776 4444444445666664433
No 154
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=31.81 E-value=43 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.6
Q ss_pred eeeeeeeccccccChhhhHHHH
Q 003662 763 LPLVATCREYQGKGCFQALFSC 784 (805)
Q Consensus 763 lp~vat~~~~r~qG~~r~L~~~ 784 (805)
|--|=|-|.|||+|||+.|++-
T Consensus 263 laCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeeeeecChhhhcccchhhhhh
Confidence 6688899999999999999864
No 155
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=31.75 E-value=31 Score=43.80 Aligned_cols=46 Identities=39% Similarity=1.115 Sum_probs=37.5
Q ss_pred CccccccccCCC--ceeecCCCCCcccccccCC--CCCCCCCccccccCc
Q 003662 507 SDDMCHVCGDGE--NLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgdgG--~LL~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (805)
....|..|..+. .++.|++|...+|..|..+ +.++++.|.|+.|..
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 345688886654 3449999999999999997 678899999999976
No 156
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=31.45 E-value=42 Score=41.33 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=40.8
Q ss_pred ccCCccccccccccCCCcccCceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhc
Q 003662 714 CGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCS 791 (805)
Q Consensus 714 tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~ 791 (805)
.+-||||-.|- ..|.+-+|.++|- |-++ =|||.|+|++-|||.+-+.-+.+.+.-
T Consensus 591 a~GdlIpW~vs-eQf~D~~F~~l~G-----------aRIV-----------RIAvhP~y~~MGYGsrAvqLL~~y~eG 645 (1011)
T KOG2036|consen 591 AAGDLIPWTVS-EQFQDEDFPKLSG-----------ARIV-----------RIAVHPEYQKMGYGSRAVQLLTDYFEG 645 (1011)
T ss_pred ccCCccceehh-hhhcccchhcccC-----------ceEE-----------EEEeccchhccCccHHHHHHHHHHHhc
Confidence 45689987664 4577888877662 2223 369999999999999998888876543
No 157
>PLN03239 histone acetyltransferase; Provisional
Probab=30.33 E-value=66 Score=36.60 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=21.6
Q ss_pred eeeeeeeccccccChhhhHHHHHHHH
Q 003662 763 LPLVATCREYQGKGCFQALFSCIERL 788 (805)
Q Consensus 763 lp~vat~~~~r~qG~~r~L~~~iE~~ 788 (805)
|--|-|-|.|||+|||+.|++--=.+
T Consensus 216 LaCIltLPpyQrkGyG~lLI~fSYeL 241 (351)
T PLN03239 216 LACILTFPAHQRKGYGRFLIAFSYEL 241 (351)
T ss_pred eEEEEecChhhhcchhhhhHhhhhHh
Confidence 66889999999999999998754433
No 158
>PTZ00064 histone acetyltransferase; Provisional
Probab=30.28 E-value=65 Score=38.27 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=21.6
Q ss_pred eeeeeeeeccccccChhhhHHHHHHHH
Q 003662 762 ELPLVATCREYQGKGCFQALFSCIERL 788 (805)
Q Consensus 762 Elp~vat~~~~r~qG~~r~L~~~iE~~ 788 (805)
-|--|-|-|.|||+|||+.|++-==.|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeL 412 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKL 412 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhh
Confidence 366788999999999999998754333
No 159
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.90 E-value=22 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=12.1
Q ss_pred CccccCCCCCCcccCCCCeeccCCCCCccCcccC
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCL 611 (805)
Q Consensus 578 C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL 611 (805)
|.+|++.. ++...-.|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 78888754 22467899999999998873
No 160
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=27.61 E-value=36 Score=36.97 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=43.2
Q ss_pred eeeehhhHhhhcccc-CCCC--CCcccccCCCcHHH---HHHHHHcC---------CchhHHHHHHHHhCCCCC
Q 003662 260 KVVSAHEFEQHAGAK-TRHP--NNHIYLENGKPIYS---IIQELKTA---------PLGILEEVVKKVAGSSFN 318 (805)
Q Consensus 260 ~v~s~~~FE~HAGs~-~~~p--~~~I~lenG~sL~~---v~~a~k~~---------~l~~L~~~i~~~~G~~~~ 318 (805)
.-+=.-|||+|--+. +-.| ++|=||+.+-.|++ ++++|+.+ +++.++.||++++|..+.
T Consensus 116 ~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~ 189 (263)
T KOG1642|consen 116 ESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPG 189 (263)
T ss_pred chhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCc
Confidence 344456777775433 3344 89999999998875 44778765 477899999999998764
No 161
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=27.36 E-value=63 Score=37.95 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.7
Q ss_pred eeeeeeeccccccChhhhHHHH
Q 003662 763 LPLVATCREYQGKGCFQALFSC 784 (805)
Q Consensus 763 lp~vat~~~~r~qG~~r~L~~~ 784 (805)
|--|-|-|.|||+|||+.|++-
T Consensus 309 LaCIltlP~yQrkGyG~~LI~~ 330 (450)
T PLN00104 309 LACILTLPPYQRKGYGKFLIAF 330 (450)
T ss_pred eEEEEecchhhhcchhheehhh
Confidence 6688899999999999999864
No 162
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=27.14 E-value=35 Score=38.68 Aligned_cols=44 Identities=23% Similarity=0.607 Sum_probs=34.0
Q ss_pred CeeccCCCCCccCccc--CCCCCCCCcccCCCCCcEEcCCchhhhHHhhh
Q 003662 595 TVIYCDQCEKEFHVGC--LRKNGLCDLKEIPKDKWFCCDDCNRIHAALQD 642 (805)
Q Consensus 595 ~LL~CdqCer~yHv~C--L~p~g~~~L~eiP~g~WFCc~~C~~i~~~Lqk 642 (805)
.++.|+.|..|||..| ... ...+..+...|+| ..|+....+++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 544 2344455778999 999988766554
No 163
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=26.94 E-value=46 Score=31.36 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred cCCCcHHHHHHHHHcCCchhHHHHHH
Q 003662 285 ENGKPIYSIIQELKTAPLGILEEVVK 310 (805)
Q Consensus 285 enG~sL~~v~~a~k~~~l~~L~~~i~ 310 (805)
.+|||||++||+=|.+....++++++
T Consensus 35 ~d~rsLye~LqenK~~Kq~efeE~~K 60 (102)
T PF10187_consen 35 YDGRSLYERLQENKAAKQEEFEEKHK 60 (102)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999998888888776
No 164
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=25.34 E-value=50 Score=41.97 Aligned_cols=48 Identities=29% Similarity=0.902 Sum_probs=38.4
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchhh
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~i 636 (805)
.|..|.+.. +...+ .|+.|.+.||..|..+ ++..++.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 577887643 23344 9999999999999988 788999999996 788665
No 165
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=78 Score=38.25 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCccccccCcCCcCCcccccccCCCCCCCCcccccCccccCCCCCCcccCCCCeeccCCCCCccCcccCC
Q 003662 543 SGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLR 612 (805)
Q Consensus 543 g~W~C~~C~~~~~~~~s~pirl~r~~~~~~~e~~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~ 612 (805)
..|||+.|..- -....-.+.|..|+..+ ..==+|+.|++.|.+.++.
T Consensus 125 ~~~Yc~~~e~f---------------l~dr~v~g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 125 EGLYCVSCERF---------------LPDRYVEGTCPKCGGED--------ARGDQCENCGRTLDPTELI 171 (558)
T ss_pred eeeEccccccc---------------ccchheeccCCCcCccc--------cCcchhhhccCcCCchhcC
Confidence 45999999650 00011124688887432 1113799999999998864
No 166
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=24.47 E-value=66 Score=27.17 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=22.5
Q ss_pred cccCCCcHHHHHHHHHcCCchhHHHHHH
Q 003662 283 YLENGKPIYSIIQELKTAPLGILEEVVK 310 (805)
Q Consensus 283 ~lenG~sL~~v~~a~k~~~l~~L~~~i~ 310 (805)
+||||+++.||-+.|-.---.||+.+--
T Consensus 4 ~leng~~ikdikefcyrd~~k~lervah 31 (65)
T PF13066_consen 4 HLENGETIKDIKEFCYRDQGKMLERVAH 31 (65)
T ss_pred EccCCcChHHHHHHHhhhhhHHHHHHHH
Confidence 7999999999998887777777765433
No 167
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=24.47 E-value=1.2e+02 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.2
Q ss_pred eeccccccChhhhHHHHHHH
Q 003662 768 TCREYQGKGCFQALFSCIER 787 (805)
Q Consensus 768 t~~~~r~qG~~r~L~~~iE~ 787 (805)
+.+..||+|+|++|++.+.+
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~ 73 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQ 73 (120)
T ss_pred EEeceeccCchHHHHHHHHH
Confidence 67899999999999987654
No 168
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=24.18 E-value=1.1e+02 Score=35.28 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=36.5
Q ss_pred eCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHH
Q 003662 743 VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIER 787 (805)
Q Consensus 743 ~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~ 787 (805)
..|++||...+..-|..++++|+||+.. ....|++++++..+..
T Consensus 343 ~kG~~VG~l~i~~~g~~i~~v~lva~~~-V~~~~~~~~~~~~~~~ 386 (388)
T PRK11397 343 SAHQRVGEIELYDRDKQVAHWPLVTLES-VGEGGMFSRLSDYFHH 386 (388)
T ss_pred cCCCEEEEEEEEECCeEEEEEEeEECCc-cccccHHHHHHHHHHh
Confidence 4489999999999999999999999865 5678999988877643
No 169
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=23.25 E-value=33 Score=31.49 Aligned_cols=30 Identities=30% Similarity=0.764 Sum_probs=18.7
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCCC
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p 613 (805)
.|..|+.++ ++-.++ -.+|...||..|+..
T Consensus 34 ~Cp~Ck~Pg------d~Cplv-~g~C~H~FH~hCI~k 63 (85)
T PF12861_consen 34 CCPDCKFPG------DDCPLV-WGKCSHNFHMHCILK 63 (85)
T ss_pred CCCCccCCC------CCCcee-eccCccHHHHHHHHH
Confidence 455666543 222333 346999999999753
No 170
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.92 E-value=59 Score=33.96 Aligned_cols=39 Identities=26% Similarity=0.859 Sum_probs=30.5
Q ss_pred CccccccccCC--------CceeecCCCCCcccccccCCCCCCCCCccccccCc
Q 003662 507 SDDMCHVCGDG--------ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgdg--------G~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
...+|.+|.+. .....|..|...||..|... -.||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 45789999864 35689999999999999973 23888854
No 171
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=35 Score=38.70 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=29.9
Q ss_pred ccCccccCCCCCCcccCCCCeeccCCCCCccCcccCCCCCCCCcccCCCCCcEEcCCchh
Q 003662 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~p~g~~~L~eiP~g~WFCc~~C~~ 635 (805)
..|.||-... ..+..+.=--|...||..|.++ ++ . ...-|| +-|++
T Consensus 230 ~~CaIClEdY------~~GdklRiLPC~H~FH~~CIDp-WL---~---~~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY------EKGDKLRILPCSHKFHVNCIDP-WL---T---QTRTFC-PVCKR 275 (348)
T ss_pred ceEEEeeccc------ccCCeeeEecCCCchhhccchh-hH---h---hcCccC-CCCCC
Confidence 4799998642 2333333368999999999976 21 1 112367 89977
No 172
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=21.57 E-value=28 Score=30.51 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=16.7
Q ss_pred CCCCCcccccccCCCCCCCCCccccccC
Q 003662 524 NGCPLAFHAACLDPLLIPESGWRCPNCR 551 (805)
Q Consensus 524 d~Cp~afH~~CL~~~~vP~g~W~C~~C~ 551 (805)
..|.-.||..|+.. +-.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~~--Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQ--WLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHH--HHTTSSB-TTSS
T ss_pred cccCCCEEHHHHHH--HHhcCCcCCCCC
Confidence 34899999999974 112233788774
No 173
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=21.22 E-value=2.1e+02 Score=31.45 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=44.7
Q ss_pred EEEEEeeCCEEEEEEEE-E----eecCceeeeeeee-eeccccccChhhhHHHHHHHHHhcCCcceEEeccCCC
Q 003662 737 YSVILTVKSVVVSAGLL-R----IFGREVAELPLVA-TCREYQGKGCFQALFSCIERLLCSLNVENLVLPACLP 804 (805)
Q Consensus 737 Yt~vL~~~~~vvs~a~l-r----v~g~~~AElp~va-t~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVlPA~~~ 804 (805)
+-++++.+|++|++.-+ . .+|..+.-+|+.. .-+--...-..++|+.+++.+++.+|+..+.|-...|
T Consensus 34 ~~l~~~~~g~lvg~lPl~~~r~~~~g~~l~S~P~~~ygG~l~~~~~~~~~l~~~~~~~~~~~~~~~l~lr~~~~ 107 (330)
T TIGR03019 34 YFLYAERDGRIVGVLPLAEIRSRLFGNFLVSLPFCVYGGIAADSAEVAQALEAEAQGLADRLGVGHLELRHLTP 107 (330)
T ss_pred eEEEEecCCcEEEEecceeccccccCCCeeecCCCCcCccccCCHHHHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 44666788999997744 2 3587777777621 0000112234567999999999999999998765443
No 174
>cd00716 creatine_kinase_like Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes. Eukaryotic creatine kinase-like phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK), which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CKs are found as tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial, cytosolic, and flagellar) isoforms. Mitochondrial and cytoplasmic CKs are dimeric or octameric, while the flagellar isoforms are trimers with three CD domains fused as a single protein chain. CKs are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK, one
Probab=21.21 E-value=71 Score=36.49 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=53.1
Q ss_pred HHHHhhhhcccccc-cc-ccCCccccccccccCCCcccCceEEEEEeeCCEEEEEEEEEeecCceeeeeeeeeecccccc
Q 003662 698 SATAIFRECFDPII-AE-CGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGK 775 (805)
Q Consensus 698 ~Al~If~EcF~PIv-~~-tg~DlI~~mVy~r~~~~~dF~GfYt~vL~~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~q 775 (805)
++-.+|.|-|+||| ++ .|.+--+.....-+...++ + . .-++.+|-...+|+ ++.++.+||-.....-+++
T Consensus 65 esY~~F~~lfdpvI~~~H~g~~~~~~h~~d~~~~~l~--~---~--~~d~~~VlSsRVRl-aRNl~g~~Fpp~ls~~er~ 136 (357)
T cd00716 65 ESYEVFKDLFDPVIDERHGGYKPTAKHPTDLDPTKLK--G---G--QFDPKYVLSSRVRT-GRSIRGFCLPPHCSRAERR 136 (357)
T ss_pred HHHHHHHHHhHHHHHHHccCCCCCccccCCCChhhcC--C---C--CCCCCeEEEeEEEe-eeecCCCCCCccCCHHHHH
Confidence 56779999999999 54 4433221111111111111 1 0 12356777788888 8999999999888888887
Q ss_pred ChhhhHHHHHHHH
Q 003662 776 GCFQALFSCIERL 788 (805)
Q Consensus 776 G~~r~L~~~iE~~ 788 (805)
-+=+.+..+++.+
T Consensus 137 ~ve~~v~~al~~l 149 (357)
T cd00716 137 EVEKIAVEALASL 149 (357)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777663
No 175
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=20.90 E-value=2e+02 Score=31.62 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=46.6
Q ss_pred EEEe-eCCEEEEEEEEEeecCceeeeeeeeeeccccccChhhhHHHHHHHHHhcCCcceEEe
Q 003662 739 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (805)
Q Consensus 739 ~vL~-~~~~vvs~a~lrv~g~~~AElp~vat~~~~r~qG~~r~L~~~iE~~l~~l~V~~lVl 799 (805)
++++ .+|++|+++++-.++.. +.....|+.+++|+.+-.-.|+-.+-+.+..-|++.+=+
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDf 258 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRDE-VLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDF 258 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCCE-EEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEc
Confidence 4456 68999998887666654 445588999999999988888888888888888877643
No 176
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=20.41 E-value=62 Score=28.64 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=20.6
Q ss_pred chhhHHhhccCCcCCceEEEeecC
Q 003662 212 PTNVKKLLSTGILDGACVKYISTS 235 (805)
Q Consensus 212 p~~~k~Ll~tg~leg~~V~y~~~~ 235 (805)
+.-.+-|++-|++.|..|+.....
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~a 43 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVA 43 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEEC
Confidence 556789999999999999998654
No 177
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.39 E-value=74 Score=37.01 Aligned_cols=34 Identities=21% Similarity=0.589 Sum_probs=21.1
Q ss_pred cCccccCCCCCCcccCCCCeeccCCCCCccCcccCC
Q 003662 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLR 612 (805)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~LL~CdqCer~yHv~CL~ 612 (805)
.|.+|.+.-....+-++ .+.=..=+|-||+.|.+
T Consensus 396 rCs~C~~PI~P~~G~~e--tvRvvamdr~fHv~CY~ 429 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDE--TVRVVAMDRDFHVNCYK 429 (468)
T ss_pred chhhccCCccCCCCCcc--eEEEEEcccccccccee
Confidence 59999987554333222 22223347899999974
No 178
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.28 E-value=60 Score=35.56 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=18.2
Q ss_pred CCCccccccccC-------------CCceeecCCCCCcccccccCCCCCCCCCccccccCc
Q 003662 505 GGSDDMCHVCGD-------------GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 505 ~~ndd~C~vCgd-------------gG~LL~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (805)
.++...|.+||. |-..+.|..|...||. ....|++|-+
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~----------~R~~Cp~Cg~ 219 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF----------VRIKCPYCGN 219 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE------------TTS-TTT--
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee----------cCCCCcCCCC
Confidence 455678999974 2267888888877663 2345777754
Done!