Query 003662
Match_columns 805
No_of_seqs 346 out of 1675
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 17:40:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003662.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1713-1717//hhsearch_pdb/003662hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 152.1 6.5 97 503-635 2-103 (111)
2 2kwj_A Zinc finger protein DPF 1.0 1 1 144.5 4.0 93 509-637 2-109 (114)
3 3v43_A Histone acetyltransfera 1.0 1 1 136.7 5.0 94 507-635 4-111 (112)
4 4gne_A Histone-lysine N-methyl 1.0 1 1 123.6 8.0 90 503-632 10-101 (107)
5 2lbm_A Transcriptional regulat 1.0 1 1 106.5 3.2 94 449-552 13-116 (142)
6 3u5n_A E3 ubiquitin-protein li 1.0 1 1 97.4 4.2 49 504-552 3-53 (207)
7 3o36_A Transcription intermedi 1.0 1 1 96.9 4.5 47 506-552 2-50 (184)
8 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 94.0 6.4 50 503-552 20-71 (88)
9 2ro1_A Transcription intermedi 1.0 1 1 92.3 4.2 46 507-552 1-48 (189)
10 2l43_A N-teminal domain from h 1.0 1 1 88.9 3.2 49 504-552 21-74 (88)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=152.07 Aligned_cols=97 Identities=33% Similarity=0.985 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCCCCCE---EECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778775434322678931---2048989724433347888--89988325446767768866655457887799865346
Q 003662 503 TTGGSDDMCHVCGDGENL---LLCNGCPLAFHAACLDPLL--IPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGG 577 (805)
Q Consensus 503 ~~~~ndd~C~vCgdgG~L---l~CD~Cp~afH~~CL~p~~--vP~g~W~C~~C~~~~~~~~s~Pirl~R~~k~~~~~~~~ 577 (805)
+++.+++.|.+|+++|++ |+|+.|+++||..|+++.. ++++.|+|+.|..
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~------------------------- 56 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV------------------------- 56 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC-------------------------
T ss_conf 8889979995789988875885999999773967708865544566865876782-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHH
Q ss_conf 8336678888864589971306888885686557779989865579999278698213
Q 003662 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 578 C~IC~~~d~s~~~~d~~~lL~CdqCer~yHv~CL~~~g~~~L~eiPeg~WFCc~~C~~ 635 (805)
|.+|++.+ ++..||.||+|+++||..|+.| +|.++|+++||| +.|..
T Consensus 57 C~~C~~~~------~~~~ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C-~~C~~ 103 (111)
T 2ysm_A 57 CQNCKQSG------EDSKMLVCDTCDKGYHTFCLQP----VMKSVPTNGWKC-KNCRI 103 (111)
T ss_dssp CTTTCCCS------CCTTEEECSSSCCEEEGGGSSS----CCSSCCSSCCCC-HHHHC
T ss_pred CCCCCCCC------CCCCEEECCCCCCHHHHHHCCC----CCCCCCCCCCCC-CCCCC
T ss_conf 62347658------9877658999980886986587----656688988299-28827
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=144.48 Aligned_cols=93 Identities=28% Similarity=0.866 Sum_probs=79.6
Q ss_pred CCCCCCCC----------CCCEEECCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43432267----------8931204898972443334788-----88998832544676776886665545788779986
Q 003662 509 DMCHVCGD----------GENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGA 573 (805)
Q Consensus 509 d~C~vCgd----------gG~Ll~CD~Cp~afH~~CL~p~-----~vP~g~W~C~~C~~~~~~~~s~Pirl~R~~k~~~~ 573 (805)
+.|.+|.. +++||.|++|+++||..|+++. .++++.|+|+.|..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~--------------------- 60 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS--------------------- 60 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCC---------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCC---------------------
T ss_conf 80865889753444679999986929899832321387846643116877517566273---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHH
Q ss_conf 5346833667888886458997130688888568655777998986557999927869821346
Q 003662 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 637 (805)
Q Consensus 574 ~~~~C~IC~~~d~s~~~~d~~~lL~CdqCer~yHv~CL~~~g~~~L~eiPeg~WFCc~~C~~i~ 637 (805)
|.+|+..+ +++.||.||+|+++||+.|+.| +|.++|+++||| +.|....
T Consensus 61 ----C~~C~~~~------~~~~ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C-~~C~~~~ 109 (114)
T 2kwj_A 61 ----CILCGTSE------NDDQLLFCDDCDRGYHMYCLNP----PVAEPPEGSWSC-HLCWELL 109 (114)
T ss_dssp ----CTTTTCCT------TTTTEEECSSSCCEEETTTSSS----CCSSCCSSCCCC-HHHHHHH
T ss_pred ----CCCCCCCC------CCCCEEECCCCCCCCCCCCCCC----CCCCCCCCCEEC-CCCCCHH
T ss_conf ----37563468------8874577489894102504598----746788978199-2410344
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=136.73 Aligned_cols=94 Identities=29% Similarity=0.845 Sum_probs=79.2
Q ss_pred CCCCCCCCC---------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 754343226---------7893120489897244333478-----88899883254467677688666554578877998
Q 003662 507 SDDMCHVCG---------DGENLLLCNGCPLAFHAACLDP-----LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 572 (805)
Q Consensus 507 ndd~C~vCg---------dgG~Ll~CD~Cp~afH~~CL~p-----~~vP~g~W~C~~C~~~~~~~~s~Pirl~R~~k~~~ 572 (805)
...+|.+|. ++++||.|++|+++||..||++ ..++.+.|+|+.|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~-------------------- 63 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT-------------------- 63 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC--------------------
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCC--------------------
T ss_conf 676131038933427689911163753449988970353888999875424653011775--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHH
Q ss_conf 653468336678888864589971306888885686557779989865579999278698213
Q 003662 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (805)
Q Consensus 573 ~~~~~C~IC~~~d~s~~~~d~~~lL~CdqCer~yHv~CL~~~g~~~L~eiPeg~WFCc~~C~~ 635 (805)
|.+|+..+. +++.||.||+|+++||+.|+.| +|.++|+++||| +.|+.
T Consensus 64 -----C~vC~~~~~-----~~~~ll~Cd~C~~~yH~~Cl~p----~l~~~P~~~W~C-~~C~~ 111 (112)
T 3v43_A 64 -----CSSCRDQGK-----NADNMLFCDSCDRGFHMECCDP----PLTRMPKGMWIC-QICRP 111 (112)
T ss_dssp -----BTTTCCCCC-----TTCCCEECTTTCCEECGGGCSS----CCSSCCSSCCCC-TTTSC
T ss_pred -----CCCCCCCCC-----CCCCEEECCCCCCEEECCCCCC----CCCCCCCCCEEC-CCCCC
T ss_conf -----446668688-----8565687489989156635899----989899988579-78789
No 4
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=123.63 Aligned_cols=90 Identities=31% Similarity=0.789 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7787754343226789312048--98972443334788889988325446767768866655457887799865346833
Q 003662 503 TTGGSDDMCHVCGDGENLLLCN--GCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVI 580 (805)
Q Consensus 503 ~~~~ndd~C~vCgdgG~Ll~CD--~Cp~afH~~CL~p~~vP~g~W~C~~C~~~~~~~~s~Pirl~R~~k~~~~~~~~C~I 580 (805)
....+++.|.+|+++|+||+|| +||++||..|+++..+|+|.|+|+.|. |.+
T Consensus 10 ~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~--------------------------C~~ 63 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQ--------------------------CDE 63 (107)
T ss_dssp CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGB--------------------------CTT
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--------------------------CCC
T ss_conf 868897999847997847577999999265225186875799888898999--------------------------881
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 6678888864589971306888885686557779989865579999278698
Q 003662 581 CRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDD 632 (805)
Q Consensus 581 C~~~d~s~~~~d~~~lL~CdqCer~yHv~CL~~~g~~~L~eiPeg~WFCc~~ 632 (805)
|++.. -+.|..|+++||..|+.. .|...+.+.|+||..
T Consensus 64 C~k~~----------~~~C~~Cp~sfC~~c~~g----~l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 64 CSSAA----------VSFCEFCPHSFCKDHEKG----ALVPSALEGRLCCSE 101 (107)
T ss_dssp TCSBC----------CEECSSSSCEECTTTCTT----SCEECTTTTCEECTT
T ss_pred CCCCC----------CCCCCCCCCCHHHHCCCC----CCEECCCCCCEECCC
T ss_conf 77989----------867477871011211587----311027889666677
No 5
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=106.47 Aligned_cols=94 Identities=23% Similarity=0.504 Sum_probs=67.5
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 947738999700721101134875457886530134797526899996-5017777787754343226789312048989
Q 003662 449 NGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISL-AMGQRRTTGGSDDMCHVCGDGENLLLCNGCP 527 (805)
Q Consensus 449 ~GI~C~cC~~~~Sps~FE~HAG~~~rr~Py~~I~l~~G~sL~ela~~l-~~~~~~~~~~ndd~C~vCgdgG~Ll~CD~Cp 527 (805)
.+|.|.+|+..+++.++ +..++.|+..+.++ ..+.... ...-....+.++++|.+|++||+|++||.||
T Consensus 13 ~~i~Ct~Cg~~~~~~q~-----~~~~~HPll~v~~C-----~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG~LlcCD~Cp 82 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQK-----DSIYRHPSLQVLIC-----KNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCH 82 (142)
T ss_dssp CCCBCTTTCSBSTTTCS-----SSEEEETTTTEEEE-----HHHHHHHHHSCCCBCTTSCBCSCSSSCCCSSEEECSSSC
T ss_pred CCCEECCCCCCCCCCCC-----CCHHCCCCCCCCCC-----HHHHHHHHCCCCEECCCCCCCEECCCCCCCCEEECCCCC
T ss_conf 79885489986565456-----63212987566424-----778988723781316888878000039998478689989
Q ss_pred CCCCCCCCCCCC---------CCCCCCCCCCCCC
Q ss_conf 724433347888---------8998832544676
Q 003662 528 LAFHAACLDPLL---------IPESGWRCPNCRQ 552 (805)
Q Consensus 528 ~afH~~CL~p~~---------vP~g~W~C~~C~~ 552 (805)
++||..|+.|+. .|+++|+|+.|..
T Consensus 83 r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 83 NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCC
T ss_conf 7312745488887366654246899988212668
No 6
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=97.44 Aligned_cols=49 Identities=41% Similarity=1.025 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 7877543432267893120489897244333478--888998832544676
Q 003662 504 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 504 ~~~ndd~C~vCgdgG~Ll~CD~Cp~afH~~CL~p--~~vP~g~W~C~~C~~ 552 (805)
.+.+++.|.+|+++|+|++||+|+++||..|+.| ..+|+|.|+|+.|+.
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 788889898889999367769999843871589998888998878684268
No 7
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=96.88 Aligned_cols=47 Identities=40% Similarity=1.012 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 77543432267893120489897244333478--888998832544676
Q 003662 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 506 ~ndd~C~vCgdgG~Ll~CD~Cp~afH~~CL~p--~~vP~g~W~C~~C~~ 552 (805)
.|++.|.+|+++|+|++||+|+++||..|+.| ..+|+|.|+|+.|+.
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9999541179999056629999530811368987879998878925568
No 8
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=94.03 Aligned_cols=50 Identities=34% Similarity=0.869 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 77877543432267893120489897244333478--888998832544676
Q 003662 503 TTGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 503 ~~~~ndd~C~vCgdgG~Ll~CD~Cp~afH~~CL~p--~~vP~g~W~C~~C~~ 552 (805)
..+++++.|.+|+++|+||+||+|+++||+.|+.| ..+|+|+|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3388998183769999778899999724163289897878699767726448
No 9
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=92.28 Aligned_cols=46 Identities=35% Similarity=0.934 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 7543432267893120489897244333478--888998832544676
Q 003662 507 SDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (805)
Q Consensus 507 ndd~C~vCgdgG~Ll~CD~Cp~afH~~CL~p--~~vP~g~W~C~~C~~ 552 (805)
+++.|.+|+++|+|++||+|+++||..|+.| ..+|+|+|+|+.|..
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988276479999456899998333102289875668998788927047
No 10
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.93 Aligned_cols=49 Identities=41% Similarity=0.920 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCC-----CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 787754343226789-----3120489897244333478888998832544676
Q 003662 504 TGGSDDMCHVCGDGE-----NLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (805)
Q Consensus 504 ~~~ndd~C~vCgdgG-----~Ll~CD~Cp~afH~~CL~p~~vP~g~W~C~~C~~ 552 (805)
..++++.|.+|++++ +||+||+|+++||+.|++|+.+|+|+|||+.|..
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCEECCCCCC
T ss_conf 678899177689989779888878999973552204898866899509812528
Done!