Query 003663
Match_columns 805
No_of_seqs 442 out of 3924
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 17:59:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003663.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1713-1717//hhsearch_pdb/003663hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 361.3 16.9 236 550-791 46-321 (329)
2 4gt4_A Tyrosine-protein kinase 1.0 1 1 359.8 17.6 235 549-789 30-306 (308)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 358.1 15.3 235 549-789 17-289 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 346.1 18.2 240 539-788 31-299 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 342.7 9.8 243 540-789 60-347 (353)
6 3m7h_A Putidacin L1; monocot m 1.0 1 1 338.1 14.0 228 52-312 12-256 (276)
7 4fih_A Serine/threonine-protei 1.0 1 1 331.3 17.6 225 550-782 79-323 (346)
8 4fie_A Serine/threonine-protei 1.0 1 1 331.1 18.6 230 549-786 155-406 (423)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 328.8 16.5 234 550-789 8-297 (303)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 328.3 15.1 226 550-788 63-315 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=361.26 Aligned_cols=236 Identities=24% Similarity=0.349 Sum_probs=204.0
Q ss_pred HHCCCCCCCCCEEEEEEC------CCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECC
Q ss_conf 841499358808999928------994999999625--348579999999984036573235787854078048998336
Q 003663 550 TANFGNQLGPSVYKGLLP------NKMPVIAKVMNV--VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYEYV 621 (805)
Q Consensus 550 t~~fg~g~~~~Vykg~~~------~~~~vavK~l~~--~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~Ey~ 621 (805)
.+.+|+|.+|.||+|.+. ++..||||++.. ....++|.+|++++++++|||||+++|+|.+.+..+||||||
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~ 125 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYM 125 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 77971477848998998786657789699999977579799999999999998589989996989999899899999827
Q ss_pred CCCCHHHHHHHHCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEECCC
Q ss_conf 89997898851012-----------4579999999999999999999831079998053599999946689996599157
Q 003663 622 PNGSLDNWLFNMEQ-----------AQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKVTDF 690 (805)
Q Consensus 622 ~~gsL~~~l~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki~Df 690 (805)
++|+|.++|..... ....++|.+++.|+.|||+||.||| +.+|+||||||+|||+++++.+||+||
T Consensus 126 ~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~DF 202 (329)
T 4aoj_A 126 RHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDF 202 (329)
T ss_dssp TTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEECCCCCHHHEEECCCCCEEECCC
T ss_conf 99939999986075410012211245788999999999999999999984---088422666676489889996897666
Q ss_pred CCCC-------------------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCHHHHHHHHHCCCC-CCC
Q ss_conf 8542-------------------468000078899987856612699999880-9977899988999998818667-789
Q 003663 691 GLRS-------------------LLAKETASSLESPSERDIYMFGEMLLQIVT-CKTDILGSDLRDLVNKINGELN-SED 749 (805)
Q Consensus 691 Gla~-------------------~~~pe~~~~~~~s~ksDV~SfGvil~Ellt-g~~p~~~~~~~~~~~~i~~~~~-~~~ 749 (805)
|+++ |||||......++.++|||||||++|||+| |+.||......+....+..... ..+
T Consensus 203 Gla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p 282 (329)
T 4aoj_A 203 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERP 282 (329)
T ss_dssp C----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCC
T ss_pred CCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 03336567875300476455656658265447999966300105789999982899999998999999999808989986
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 731899999999998711479999999988999970476998
Q 003663 750 NRVSEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTLSVD 791 (805)
Q Consensus 750 ~~l~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~~~~ 791 (805)
... ...+.+++.+||+.||++||||.||++.|+.+.+.+
T Consensus 283 ~~~---~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 283 RAC---PPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp TTC---CHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred CCC---CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 446---399999999974759657929999999999874588
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=359.83 Aligned_cols=235 Identities=20% Similarity=0.297 Sum_probs=203.5
Q ss_pred HHHCCCCCCCCCEEEEEEC------CCCEEEEEEECC---CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEE
Q ss_conf 9841499358808999928------994999999625---3485799999999840365732357878540780489983
Q 003663 549 LTANFGNQLGPSVYKGLLP------NKMPVIAKVMNV---VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYE 619 (805)
Q Consensus 549 ~t~~fg~g~~~~Vykg~~~------~~~~vavK~l~~---~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~E 619 (805)
..+.+|+|.||.||+|.+. .++.||||++.. ....++|.+|+.++.+++|||||+++|+|.+....+||||
T Consensus 30 ~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~E 109 (308)
T 4gt4_A 30 FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFS 109 (308)
T ss_dssp EEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEE
T ss_conf 86691358884899999857765888869999998801496899999999999985899898773649988998899998
Q ss_pred CCCCCCHHHHHHHHCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 3689997898851012------------4579999999999999999999831079998053599999946689996599
Q 003663 620 YVPNGSLDNWLFNMEQ------------AQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKV 687 (805)
Q Consensus 620 y~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki 687 (805)
||++|+|.++|..... ....++|..++.|+.|||+||.||| +.+|+||||||+|||+++++.+||
T Consensus 110 y~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~Ki 186 (308)
T 4gt4_A 110 YCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKI 186 (308)
T ss_dssp CCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 18999499999862765433332211112468999999999999999999998---689977873623068879997898
Q ss_pred CCCCCCC-------------------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCHHHHHHHHHCCCC-
Q ss_conf 1578542-------------------468000078899987856612699999880-9977899988999998818667-
Q 003663 688 TDFGLRS-------------------LLAKETASSLESPSERDIYMFGEMLLQIVT-CKTDILGSDLRDLVNKINGELN- 746 (805)
Q Consensus 688 ~DfGla~-------------------~~~pe~~~~~~~s~ksDV~SfGvil~Ellt-g~~p~~~~~~~~~~~~i~~~~~- 746 (805)
+|||+++ |+|||......++.++|||||||++|||+| |+.||.+....+....+.....
T Consensus 187 ~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~ 266 (308)
T 4gt4_A 187 SDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVL 266 (308)
T ss_dssp CCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCC
T ss_pred CCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 87602023367774047345125776569899827999963000157999999996899999998999999999819989
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 7897318999999999987114799999999889999704769
Q 003663 747 SEDNRVSEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTLS 789 (805)
Q Consensus 747 ~~~~~l~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~~ 789 (805)
..+.. ....+.+++.+||+.||.+||||.+|++.|+....
T Consensus 267 ~~p~~---~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 267 PCPDD---CPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp CCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred CCCCC---CHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 99620---36999999999758796579299999999985318
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=358.14 Aligned_cols=235 Identities=24% Similarity=0.396 Sum_probs=203.4
Q ss_pred HHHCCCCCCCCCEEEEEEC------CCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 9841499358808999928------994999999625--34857999999998403657323578785407804899833
Q 003663 549 LTANFGNQLGPSVYKGLLP------NKMPVIAKVMNV--VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYEY 620 (805)
Q Consensus 549 ~t~~fg~g~~~~Vykg~~~------~~~~vavK~l~~--~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~Ey 620 (805)
..+.+|+|.+|.||+|.+. ++..||||++.. ....++|.+|++++++++|||||+++|+|.+++..+|||||
T Consensus 17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey 96 (299)
T 4asz_A 17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY 96 (299)
T ss_dssp EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 82498207882999999877666778879999996777858999999999999858998886287999569989999985
Q ss_pred CCCCCHHHHHHHHC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEECCCC
Q ss_conf 68999789885101---------245799999999999999999998310799980535999999466899965991578
Q 003663 621 VPNGSLDNWLFNME---------QAQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKVTDFG 691 (805)
Q Consensus 621 ~~~gsL~~~l~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki~DfG 691 (805)
|++|+|.++|.... .....++|.+++.++.||++||.||| +.+|+||||||+|||+++++.+||+|||
T Consensus 97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DFG 173 (299)
T 4asz_A 97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFG 173 (299)
T ss_dssp CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEECCCC
T ss_conf 8999689999860864211123577788999999999999999999997---5990467657763898799868988730
Q ss_pred CCC-------------------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCHHHHHHHHHCCC-CCCCC
Q ss_conf 542-------------------468000078899987856612699999880-997789998899999881866-77897
Q 003663 692 LRS-------------------LLAKETASSLESPSERDIYMFGEMLLQIVT-CKTDILGSDLRDLVNKINGEL-NSEDN 750 (805)
Q Consensus 692 la~-------------------~~~pe~~~~~~~s~ksDV~SfGvil~Ellt-g~~p~~~~~~~~~~~~i~~~~-~~~~~ 750 (805)
+++ |++||......++.++|||||||++|||+| |+.||.+....+....+.... ...+.
T Consensus 174 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~ 253 (299)
T 4asz_A 174 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPR 253 (299)
T ss_dssp CHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCT
T ss_pred CCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 01006788741664751347010388987079997036677889999999808999999989999999998089889974
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 318999999999987114799999999889999704769
Q 003663 751 RVSEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTLS 789 (805)
Q Consensus 751 ~l~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~~ 789 (805)
..+ ..+.+++.+||+.||++||||.+|+++|++...
T Consensus 254 ~~~---~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 254 TCP---QEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp TCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 143---999999999768796689299999999987776
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=346.09 Aligned_cols=240 Identities=23% Similarity=0.323 Sum_probs=195.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECC----CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCE
Q ss_conf 22399999999841499358808999928994999999625----34857999999998403657323578785407804
Q 003663 539 IRLSYEEVRELTANFGNQLGPSVYKGLLPNKMPVIAKVMNV----VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHA 614 (805)
Q Consensus 539 ~~~~~~~l~~~t~~fg~g~~~~Vykg~~~~~~~vavK~l~~----~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~ 614 (805)
+.++++++. ..+.+|+|.+|.||+|.+.+ .||||+++. ....++|.+|+.++++++|||||+++|+|.+ +..
T Consensus 31 Wei~~~~l~-l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~ 106 (307)
T 3omv_A 31 WEIEASEVM-LSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNL 106 (307)
T ss_dssp CBCCTTSCC-EEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSC
T ss_pred CEECHHHEE-EEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEE
T ss_conf 087479949-84498208886899999899--68999997268999999999999999985899887469999978-958
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEECCCCCCC
Q ss_conf 89983368999789885101245799999999999999999998310799980535999999466899965991578542
Q 003663 615 ILIYEYVPNGSLDNWLFNMEQAQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKVTDFGLRS 694 (805)
Q Consensus 615 ~LV~Ey~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki~DfGla~ 694 (805)
+||||||++|+|.++|.. ....++|.+++.|+.|||+||.||| +.+|+||||||+|||+++++.+||+|||+|+
T Consensus 107 ~iVmEy~~gGsL~~~l~~---~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 180 (307)
T 3omv_A 107 AIVTQWCEGSSLYKHLHV---QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLAT 180 (307)
T ss_dssp EEEEECCSSCBHHHHHHT---SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred EEEEECCCCCCHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf 999974899878898752---4899999999999999999999997---7995278557899788899908994415754
Q ss_pred -------------------CCCHHHCC---CCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHH-HHHCCCCCC--C
Q ss_conf -------------------46800007---8899987856612699999880997789998899999-881866778--9
Q 003663 695 -------------------LLAKETAS---SLESPSERDIYMFGEMLLQIVTCKTDILGSDLRDLVN-KINGELNSE--D 749 (805)
Q Consensus 695 -------------------~~~pe~~~---~~~~s~ksDV~SfGvil~Elltg~~p~~~~~~~~~~~-~i~~~~~~~--~ 749 (805)
|||||... ...++.++|||||||++|||+||+.||.+........ .+......+ +
T Consensus 181 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~ 260 (307)
T 3omv_A 181 VKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLS 260 (307)
T ss_dssp C------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCST
T ss_pred ECCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 24667764031564468772498786146899878687757289999999978899899996999999996588888720
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 731899999999998711479999999988999970476
Q 003663 750 NRVSEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTL 788 (805)
Q Consensus 750 ~~l~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~ 788 (805)
.........+.+++.+||+.||.+||||.+|++.|+.+.
T Consensus 261 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 261 KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 035445699999999975779768909899999999974
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=342.67 Aligned_cols=243 Identities=20% Similarity=0.310 Sum_probs=197.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCCEEEEEECC------CCEEEEEEECCCC---CHHHHHHHHHHHHHCCC-CCEEEEEEEEE
Q ss_conf 23999999998414993588089999289------9499999962534---85799999999840365-73235787854
Q 003663 540 RLSYEEVRELTANFGNQLGPSVYKGLLPN------KMPVIAKVMNVVA---TEKDFRRVVSTLGAMHH-RHLVSIKGFCF 609 (805)
Q Consensus 540 ~~~~~~l~~~t~~fg~g~~~~Vykg~~~~------~~~vavK~l~~~~---~~~~~~~e~~~l~~l~H-~nIv~l~g~~~ 609 (805)
.++++++ +..+.+|+|.||.||+|.... .+.||||++.... ..++|.+|++++.+++| ||||+++|+|.
T Consensus 60 Ei~~~~~-~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~ 138 (353)
T 4ase_A 60 EFPRDRL-KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT 138 (353)
T ss_dssp BCCGGGE-EEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred EECHHHE-EEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 7057995-982098217895999999868885447759999997623586899999999999997579984877889999
Q ss_pred CC-CCEEEEEECCCCCCHHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 07-8048998336899978988510124------------5799999999999999999998310799980535999999
Q 003663 610 ES-EHAILIYEYVPNGSLDNWLFNMEQA------------QVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLEN 676 (805)
Q Consensus 610 ~~-~~~~LV~Ey~~~gsL~~~l~~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~N 676 (805)
+. ...+||||||++|+|.++|...... ...+++..++.++.|||+||.||| +.+|+||||||+|
T Consensus 139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~N 215 (353)
T 4ase_A 139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARN 215 (353)
T ss_dssp CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGG
T ss_pred ECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCCCC
T ss_conf 4697799999838989799999743566654333410110356899999999999999987676---2784357467211
Q ss_pred EEECCCCCEEECCCCCCC-------------------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCHH-
Q ss_conf 466899965991578542-------------------468000078899987856612699999880-99778999889-
Q 003663 677 VMLDEKLVPKVTDFGLRS-------------------LLAKETASSLESPSERDIYMFGEMLLQIVT-CKTDILGSDLR- 735 (805)
Q Consensus 677 ill~~~~~~ki~DfGla~-------------------~~~pe~~~~~~~s~ksDV~SfGvil~Ellt-g~~p~~~~~~~- 735 (805)
||+++++.+||+|||+|+ |||||......++.++|||||||++|||+| |+.||.+....
T Consensus 216 ILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~ 295 (353)
T 4ase_A 216 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE 295 (353)
T ss_dssp EEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred EEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 30579997897965432224568872032540146665698999469999755374068999999818999999989899
Q ss_pred HHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99998818667-7897318999999999987114799999999889999704769
Q 003663 736 DLVNKINGELN-SEDNRVSEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTLS 789 (805)
Q Consensus 736 ~~~~~i~~~~~-~~~~~l~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~~ 789 (805)
.....+..... ..+... ..++.+++.+||+.||.+||||.+|++.|+..++
T Consensus 296 ~~~~~i~~g~~~~~p~~~---~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 296 EFCRRLKEGTRMRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHHHHHTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCC---CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999738988888657---8999999999768696679399999999999998
No 6
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=1.00 E-value=1 Score=338.14 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=187.0
Q ss_pred CCCCCCCCCCEEEEECCCCEEEECCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCC-----CC
Q ss_conf 2244337997166316999386089938783341899999999349999950578999850999069997788-----96
Q 003663 52 LAMVSVPLGFEVSGFDKSKTWVSENGVFAFGFLDTSSKYSDSDGFVVGIRFNLKDKAANLPVWAIGGGLRVSE-----NS 126 (805)
Q Consensus 52 ~~~~~~~~g~~l~~~~~~~~lvS~~g~F~lGFf~~~~~~~~~~~~ylgIw~~~~~~~~~~~VW~anr~~pv~~-----~~ 126 (805)
++.++|++|++|++ +++|||++|+|+||||.+ + ++|+ |+ +.+ +||+|||+.|+++ ++
T Consensus 12 ~~~~~l~~g~~l~~---~~~l~S~~g~F~lgf~~~------~-~~~l---y~----~~~-vvW~Anr~~p~~~~~~~~~~ 73 (276)
T 3m7h_A 12 VGTSVLPAYQTLSA---GQYLLSPNQRFKLLLQGD------G-NLVI---QD----NGA-TVWVANEQQPFSSTIPLRNK 73 (276)
T ss_dssp TTSSEECTTEEBCT---TCEEECTTSSEEEEECTT------S-CEEE---EE----TTE-EEEECSTTSTTEEEEECCCT
T ss_pred CCCCEECCCCEECC---CCEEECCCCCEEEEEECC------C-CEEE---EC----CCC-EEEECCCCCCCCCCCCCCCE
T ss_conf 44787469987669---998980999589999789------9-7699---87----997-29989888776775556532
Q ss_pred EEEECCCCCEEE--EECCCCCEEECCCCCC------CCEEEEEEEECCCEEEECCCCCEEEEECCCCCCCCCCCCC----
Q ss_conf 589920885899--8399992895278888------8602999970777579748998225524578752389995----
Q 003663 127 TIRLNLDGRLIL--FENPSGLIVWSSNTSN------LGVQKATLLNNGNLLLMGSEDNVLWESFNSPTNTLLPGQS---- 194 (805)
Q Consensus 127 ~l~l~~~G~L~l--~~~~~~~~vWstn~~~------~~~~~a~LldsGNlVl~~~~~~~lWQSFd~PtDTlLpg~~---- 194 (805)
.|+|+.+|+|+| .|+ ++.+||+||++. .++++|+|+|+|||||++ +.++||| |||||+|||||
T Consensus 74 ~l~l~~~G~Lvl~~~~~-~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~~~lWqS--~ptdtlLpg~~~~~~ 148 (276)
T 3m7h_A 74 KAPLAFYVQYGAFLDDY-SRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--SLALWNG--TPAIPLVPGAIDSLL 148 (276)
T ss_dssp TCCSEEEESSSEEEEEG-GGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE--EEEEEES--CTTSCCCCSCTTCEE
T ss_pred EEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCEEEEEECCCCEEECC--CCEEECC--CCCCCCCCCCCCCCC
T ss_conf 89995798699987579-997899847876545556786699994899989548--9521175--433140245411211
Q ss_pred CCCCCEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 56894573599999986239986468619999807801478042368866432226665479975289579998312269
Q 003663 195 FHFPRVLRAPSTKSISSYYNFVIRRSGELALVWESNVTYWRTHLSSYGVAKEARFDSIGVLRLFDASNKTVWSASSKDFG 274 (805)
Q Consensus 195 l~~~~~l~s~~~~~~~g~~~~~~~~~g~~~l~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (805)
|..+.+|+|. +++++|.|++.++++|++++++++..+||+++.+..+. ....+...|.+.++...+..++. +....
T Consensus 149 l~~g~~L~S~-~dps~G~fsl~l~~dGnlvLy~~~~~~yW~Sgt~~~~~-~~l~l~~dGnLvl~d~~~~~vWs--S~t~~ 224 (276)
T 3m7h_A 149 LAPGSELVQG-VVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGA-VRAVFQGDGNLVVYGAGNAVLWH--SHTGG 224 (276)
T ss_dssp ECSSEEECTT-CEEEETTEEEEECTTSCEEEECTTSSEEEECCCTTTTC-CEEEECTTSCEEEECTTSCEEEE--CSCTT
T ss_pred CCCCCCCCCC-CCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCC-EEEEECCCCEEEEEECCCCEEEE--ECCCC
T ss_conf 1258632248-98889527885658825999959996999888989844-89999588769999599968998--31799
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCCEEEECEECCC
Q ss_conf 98607999999258747999951799843898030344
Q 003663 275 DPSVVLRHLRIDSDGNLRIYSWDNEAHVWRVGWQAVQN 312 (805)
Q Consensus 275 ~~~~~~~r~~L~~~G~l~~y~w~~~~~~W~~~~~~p~d 312 (805)
.. .+|++|+.||+|++|.| ...|..++.+|+.
T Consensus 225 ~~---~~rl~Ld~dGnLvly~~---~~~Wqsf~~~P~~ 256 (276)
T 3m7h_A 225 HA---SAVLRLQANGSIAILDE---KPVWARFGFQPTY 256 (276)
T ss_dssp CT---TCEEEECTTSCEEEEEE---EEEEESSSCCTTS
T ss_pred CC---CEEEEECCCCCEEEECC---CCEEECCCCCCCC
T ss_conf 88---88999968942999838---8867725745776
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=331.27 Aligned_cols=225 Identities=19% Similarity=0.244 Sum_probs=195.6
Q ss_pred HHCCCCCCCCCEEEEEEC-CCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCH
Q ss_conf 841499358808999928-994999999625--34857999999998403657323578785407804899833689997
Q 003663 550 TANFGNQLGPSVYKGLLP-NKMPVIAKVMNV--VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYEYVPNGSL 626 (805)
Q Consensus 550 t~~fg~g~~~~Vykg~~~-~~~~vavK~l~~--~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~Ey~~~gsL 626 (805)
.+.+|+|.+|.||++... +++.||+|++.. ....+.+.+|+.++.+++|||||++++++.+.+..|||||||++|+|
T Consensus 79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L 158 (346)
T 4fih_A 79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL 158 (346)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEH
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCCH
T ss_conf 07960272829999999899989999998527656899999999999867998999199999989999999969899808
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEECCCCCCC------------
Q ss_conf 89885101245799999999999999999998310799980535999999466899965991578542------------
Q 003663 627 DNWLFNMEQAQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKVTDFGLRS------------ 694 (805)
Q Consensus 627 ~~~l~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki~DfGla~------------ 694 (805)
.+++.. ..+++.....++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+++
T Consensus 159 ~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~ 230 (346)
T 4fih_A 159 TDIVTH-----TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL 230 (346)
T ss_dssp HHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCC
T ss_pred HHHHHC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCCC
T ss_conf 999871-----89899999999999999999999---8883556278899788799988990275753667887753465
Q ss_pred -----CCCHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----468000078899987856612699999880997789998899999881866778973189999999999871147
Q 003663 695 -----LLAKETASSLESPSERDIYMFGEMLLQIVTCKTDILGSDLRDLVNKINGELNSEDNRVSEGVERALRISLWCMQS 769 (805)
Q Consensus 695 -----~~~pe~~~~~~~s~ksDV~SfGvil~Elltg~~p~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~l~~i~~~Cl~~ 769 (805)
|+|||.+....++.++||||+||++|||++|+.||.+.+..+....+.................+.+++.+||+.
T Consensus 231 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~ 310 (346)
T 4fih_A 231 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVR 310 (346)
T ss_dssp CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCS
T ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 62758279999779999968999999999999997879989859999999997179998875022999999999998679
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 9999999988999
Q 003663 770 QPFLRPSIGEVVK 782 (805)
Q Consensus 770 dp~~RPs~~ev~~ 782 (805)
||.+|||+.|+++
T Consensus 311 dP~~R~ta~e~l~ 323 (346)
T 4fih_A 311 DPAQRATAAELLK 323 (346)
T ss_dssp STTTSCCHHHHTT
T ss_pred CHHHCCCHHHHHC
T ss_conf 9568909999960
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=331.13 Aligned_cols=230 Identities=19% Similarity=0.239 Sum_probs=196.7
Q ss_pred HHHCCCCCCCCCEEEEEEC-CCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 9841499358808999928-994999999625--3485799999999840365732357878540780489983368999
Q 003663 549 LTANFGNQLGPSVYKGLLP-NKMPVIAKVMNV--VATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYEYVPNGS 625 (805)
Q Consensus 549 ~t~~fg~g~~~~Vykg~~~-~~~~vavK~l~~--~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~Ey~~~gs 625 (805)
..+.+|+|.+|.||++... +++.||+|++.. ....+.+.+|+.+|.+++|||||++++++.+.+..|||||||++|+
T Consensus 155 ~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~ 234 (423)
T 4fie_A 155 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA 234 (423)
T ss_dssp EEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCC
T ss_conf 61696248184899999999998999999862554689999999999985799898716899998999999996989982
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEECCCCCCC-----------
Q ss_conf 789885101245799999999999999999998310799980535999999466899965991578542-----------
Q 003663 626 LDNWLFNMEQAQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKLVPKVTDFGLRS----------- 694 (805)
Q Consensus 626 L~~~l~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~~~ki~DfGla~----------- 694 (805)
|.+++.. ..+++.....++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+++
T Consensus 235 L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 306 (423)
T 4fie_A 235 LTDIVTH-----TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS 306 (423)
T ss_dssp HHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCC
T ss_pred HHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCC
T ss_conf 8988761-----69899999999999999999999---889044657877789858999898037265477788764346
Q ss_pred ------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ------46800007889998785661269999988099778999889999988186677897318999999999987114
Q 003663 695 ------LLAKETASSLESPSERDIYMFGEMLLQIVTCKTDILGSDLRDLVNKINGELNSEDNRVSEGVERALRISLWCMQ 768 (805)
Q Consensus 695 ------~~~pe~~~~~~~s~ksDV~SfGvil~Elltg~~p~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~l~~i~~~Cl~ 768 (805)
|||||.+....++.++||||+||++|||++|+.||.+.+..+....+.................+.+++.+||+
T Consensus 307 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~ 386 (423)
T 4fie_A 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLV 386 (423)
T ss_dssp CEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 66474727999977999996899999999999999787998986999999999727998876501299999999999867
Q ss_pred CCCCCCCCHHHHHH--HHCC
Q ss_conf 79999999988999--9704
Q 003663 769 SQPFLRPSIGEVVK--VLEG 786 (805)
Q Consensus 769 ~dp~~RPs~~ev~~--~Le~ 786 (805)
.||.+|||+.|+++ .+..
T Consensus 387 ~dP~~R~ta~ell~Hp~~~~ 406 (423)
T 4fie_A 387 RDPAQRATAAELLKHPFLAK 406 (423)
T ss_dssp SSTTTSCCHHHHTTCGGGGG
T ss_pred CCHHHCCCHHHHHCCHHHCC
T ss_conf 89568909999960987568
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=328.75 Aligned_cols=234 Identities=19% Similarity=0.225 Sum_probs=184.9
Q ss_pred HHCCCCCCCCCEEEEEECCCCEEEEEEECCCCCH-HHHHHHHHHHHHCCCCCEEEEEEEEECCC----CEEEEEECCCCC
Q ss_conf 8414993588089999289949999996253485-79999999984036573235787854078----048998336899
Q 003663 550 TANFGNQLGPSVYKGLLPNKMPVIAKVMNVVATE-KDFRRVVSTLGAMHHRHLVSIKGFCFESE----HAILIYEYVPNG 624 (805)
Q Consensus 550 t~~fg~g~~~~Vykg~~~~~~~vavK~l~~~~~~-~~~~~e~~~l~~l~H~nIv~l~g~~~~~~----~~~LV~Ey~~~g 624 (805)
.+.+|+|.+|.||+|.+ +++.||||++...... ..+..|+..+.+++|||||+++|+|.+.+ .++||||||++|
T Consensus 8 ~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~g 86 (303)
T 3hmm_A 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHG 86 (303)
T ss_dssp EEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTC
T ss_pred EEEEEECCCEEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 78984089939999999-99899999988313366999999999860899988709999984688723788775178999
Q ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCEEECCCCCCCEEECCCCCEEECCCCCCC-----
Q ss_conf 978988510124579999999999999999999831079-----9980535999999466899965991578542-----
Q 003663 625 SLDNWLFNMEQAQVERSWQQRLDIALGVARALAYLHLEC-----QTCVSHGNLKLENVMLDEKLVPKVTDFGLRS----- 694 (805)
Q Consensus 625 sL~~~l~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiH~dlk~~Nill~~~~~~ki~DfGla~----- 694 (805)
+|.++|.. ..++|..+.+++.|+++||.|||+.+ ..+|+||||||+|||+++++.+||+|||+++
T Consensus 87 sL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 161 (303)
T 3hmm_A 87 SLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 161 (303)
T ss_dssp BHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETT
T ss_pred CHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
T ss_conf 68999975-----7999899999999999999999985240047898762467842089988997899847987455677
Q ss_pred ----------------CCCHHHCCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCC---------------CCHHHH
Q ss_conf ----------------4680000788------999878566126999998809977899---------------988999
Q 003663 695 ----------------LLAKETASSL------ESPSERDIYMFGEMLLQIVTCKTDILG---------------SDLRDL 737 (805)
Q Consensus 695 ----------------~~~pe~~~~~------~~s~ksDV~SfGvil~Elltg~~p~~~---------------~~~~~~ 737 (805)
|+|||.+.+. .++.++|||||||++|||+||+.|+.. .....+
T Consensus 162 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (303)
T 3hmm_A 162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 241 (303)
T ss_dssp TTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred CCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHHHHH
T ss_conf 77322104642466462698884565455677657067666479999999878998776652235310025454309999
Q ss_pred HHHH-HCCCCC-CCCCH--HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 9988-186677-89731--8999999999987114799999999889999704769
Q 003663 738 VNKI-NGELNS-EDNRV--SEGVERALRISLWCMQSQPFLRPSIGEVVKVLEGTLS 789 (805)
Q Consensus 738 ~~~i-~~~~~~-~~~~l--~~~~~~l~~i~~~Cl~~dp~~RPs~~ev~~~Le~~~~ 789 (805)
...+ .+...+ .+... .+..+.+.+++.+||+.||.+||||.+|++.|+.+.+
T Consensus 242 ~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp HHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 99875025799887655665899999999999760597579599999999998898
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=328.29 Aligned_cols=226 Identities=17% Similarity=0.130 Sum_probs=190.8
Q ss_pred HHCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCHHH
Q ss_conf 841499358808999928-9949999996253485799999999840365732357878540780489983368999789
Q 003663 550 TANFGNQLGPSVYKGLLP-NKMPVIAKVMNVVATEKDFRRVVSTLGAMHHRHLVSIKGFCFESEHAILIYEYVPNGSLDN 628 (805)
Q Consensus 550 t~~fg~g~~~~Vykg~~~-~~~~vavK~l~~~~~~~~~~~e~~~l~~l~H~nIv~l~g~~~~~~~~~LV~Ey~~~gsL~~ 628 (805)
.+.+|+|.+|.||++... ++..||+|++..... ..+|+.++.+++|||||++++++.+++..+||||||++|+|.+
T Consensus 63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~ 139 (336)
T 4g3f_A 63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQ 139 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred CCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH---HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCCHHH
T ss_conf 8685138780999999889998999999788886---9999999985799899939999998999999996659986999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCC-CEEECCCCCCC-------------
Q ss_conf 8851012457999999999999999999983107999805359999994668999-65991578542-------------
Q 003663 629 WLFNMEQAQVERSWQQRLDIALGVARALAYLHLECQTCVSHGNLKLENVMLDEKL-VPKVTDFGLRS------------- 694 (805)
Q Consensus 629 ~l~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~dlk~~Nill~~~~-~~ki~DfGla~------------- 694 (805)
+|.. ...+++.....++.||+.||.||| +.+|+||||||+|||++.++ .+||+|||+++
T Consensus 140 ~l~~----~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~ 212 (336)
T 4g3f_A 140 LIKQ----MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLT 212 (336)
T ss_dssp HHHH----HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----------
T ss_pred HHHH----CCCCCHHHHHHHHHHHHHHHHHHH---HCCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCCEEC
T ss_conf 9987----699999999999999999999999---889042616778879958999799962787768567876540221
Q ss_pred ---------CCCHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---CCCCCHHHHHHHHHHH
Q ss_conf ---------4680000788999878566126999998809977899988999998818667---7897318999999999
Q 003663 695 ---------LLAKETASSLESPSERDIYMFGEMLLQIVTCKTDILGSDLRDLVNKINGELN---SEDNRVSEGVERALRI 762 (805)
Q Consensus 695 ---------~~~pe~~~~~~~s~ksDV~SfGvil~Elltg~~p~~~~~~~~~~~~i~~~~~---~~~~~l~~~~~~l~~i 762 (805)
|||||...+..++.++||||+||++|||++|+.||.+....+....+..... ..++.++. .+.++
T Consensus 213 ~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~---~~~~l 289 (336)
T 4g3f_A 213 GDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAP---LTAQA 289 (336)
T ss_dssp -CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCH---HHHHH
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCH---HHHHH
T ss_conf 785455802008999889998908999999999999997869989989999999998089980025866799---99999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 98711479999999988999970476
Q 003663 763 SLWCMQSQPFLRPSIGEVVKVLEGTL 788 (805)
Q Consensus 763 ~~~Cl~~dp~~RPs~~ev~~~Le~~~ 788 (805)
+.+||+.||.+|||+.|+++.|...+
T Consensus 290 i~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 290 IQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 99976289768959999999999997
Done!