Query 003664
Match_columns 805
No_of_seqs 385 out of 2139
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:17:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003664.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1713-1717//hhsearch_pdb/003664hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 1.0 1 1 683.3 31.1 321 425-769 8-371 (438)
2 2rsg_A Collagen type IV alpha- 1.0 1 1 157.8 10.8 93 93-223 1-93 (94)
3 3rcp_A Pleckstrin homology dom 1.0 1 1 151.1 11.5 96 95-228 1-97 (103)
4 2d9x_A Oxysterol binding prote 1.0 1 1 150.8 11.5 103 89-229 4-109 (120)
5 1x1f_A Signal-transducing adap 1.0 1 1 149.3 12.7 96 90-225 15-114 (149)
6 1v88_A Oxysterol binding prote 1.0 1 1 147.7 12.7 97 90-227 5-127 (130)
7 4h8s_A DCC-interacting protein 1.0 1 1 143.6 10.0 96 90-226 298-400 (407)
8 2dhk_A TBC1 domain family memb 1.0 1 1 143.3 14.0 101 89-229 4-109 (119)
9 1btk_A Bruton'S tyrosine kinas 1.0 1 1 143.2 11.8 101 92-228 2-136 (169)
10 4a6h_A Phosphatidylinositol 4, 1.0 1 1 140.7 12.3 98 90-225 4-119 (120)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=1.00 E-value=1 Score=683.27 Aligned_cols=321 Identities=22% Similarity=0.358 Sum_probs=282.1
Q ss_pred CCCCHHHHHHHHHCC---CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-------CCCC------HHHHHH
Q ss_conf 465035999762029---997765565301247773676442012148899987417-------9999------899999
Q 003664 425 EKGVSLWAMIKDNIG---KDLTKICLPVYFNEPLSSLQKCFEELEYSYLIDRAYEWG-------KRGN------TLMRIL 488 (805)
Q Consensus 425 ~~~~~lwsilK~~iG---kDLskislPv~~~EP~S~LQrl~ed~ey~~lLd~A~~~~-------~~~d------~~eRm~ 488 (805)
+.+.++|+++.++|| +|||+|+|||+||||+|+||+++++|+|++||+.|+... +..| |++||+
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~ 87 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARML 87 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 54633799999876312898433520754327804999988766567888655542443322124678344678889999
Q ss_pred HHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEEECC-----CC-EEEEEEECCCCCCCCEEEEECC--CEEEEE
Q ss_conf 9999884521246-------7986778888887827999379-----98-7999973256896211589358--279999
Q 003664 489 NVAAFAVSGYAST-------EGRICKPFNPLLGETYEADYPD-----KG-LQFFSEKVSHHPMIVACHCQGT--GWKFWG 553 (805)
Q Consensus 489 ~V~aF~iS~y~~~-------~~r~kKPfNPiLGETfe~~~~d-----~g-~r~iaEQVSHHPPisA~~~e~~--g~~~~g 553 (805)
+|++|+||+|++. .++++|||||||||||+|.|++ .| ++|||||||||||||||||+++ ||+++|
T Consensus 88 ~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g 167 (438)
T 1zhx_A 88 AVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQG 167 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 99999985514530234323665556768801234899964766777875799997404799705899993899889998
Q ss_pred EEEEEEEEEEE-EEEEEEEEEEEEEECCCCEEEECCCCEEEEEECCCEEEEEECEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 84234779972-79999603799993599169851242014431034124763203999918723499997534633699
Q 003664 554 DSNLKSKFWGR-SIQLDPVGVLTLEFDDGEVFQWSKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIIDRN 632 (805)
Q Consensus 554 ~~~~kskF~G~-Si~v~~~G~~~l~f~~gE~Y~~~~p~~~i~nii~G~~~~e~~G~m~I~~~tg~~a~l~F~~~~~~~~~ 632 (805)
++.+++||||+ ||++.+.|.++|+|. ||+|+|++|+++|+|||+|++|+|++|+|.|+|++||+|+|+|+++|||||+
T Consensus 168 ~~~~kskF~G~~Sv~v~~~G~~~l~l~-~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~~tg~~~~l~F~~kg~f~g~ 246 (438)
T 1zhx_A 168 YNQIKASFTKSLMLTVKQFGHTMLDIK-DESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGK 246 (438)
T ss_dssp EEEEEEEECTTCCEEEEEECCEEEEET-TEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSS
T ss_pred EEEEEEEECCCEEEEEECCEEEEEEEC-CCEEEEECCCEEEEEEEECCEEEECCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 744688886834899981517999999-9389996286899978826526863974999728997799997188874787
Q ss_pred CCEEEEEEECC------CCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 71799999959------996899998253242999966457888544467762799710899999975564320010367
Q 003664 633 PHQVHGIVQDR------NGKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYPTRYNFTRFAITLNE 706 (805)
Q Consensus 633 ~~~V~G~V~d~------~g~~~~~i~G~Wd~~l~~~~~~~~~k~k~~~~~~~~~~lW~~~~~~~~~~~y~~t~fai~lNe 706 (805)
.|.|+|.|++. +|+++++|.|+|++.|++...... ....++|+....+... + .
T Consensus 247 ~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~---------~~~~~~~~~~~~~~~~-------~-----~ 305 (438)
T 1zhx_A 247 KNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK---------EESRLFYDAARIPAEH-------L-----N 305 (438)
T ss_dssp SSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG---------GGCEEEEETTTSCCCC-------C-----B
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEECCCC---------CCCEEEECCCCCCCCC-------C-----C
T ss_conf 65799999847756678893799999997642999767888---------6536975168787766-------5-----4
Q ss_pred CCCCCCCCCCCCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCEEEECCC
Q ss_conf 7945338899998875--3536688729988999999999999999998324---9982140487599
Q 003664 707 VTPGLKEKLPPTDSRL--RPDQRCLENGEYEMANSEKLRLEQRQRQARKMQE---NGWKPRWFAKDRA 769 (805)
Q Consensus 707 l~~~~~~~l~PTDSR~--RpD~raLe~Gd~d~A~~eK~~LEE~QR~~Rk~re---~~w~P~~F~~~~~ 769 (805)
+.| .+.++|||||+ |||++||++||++.|+++|.+|||+||++||.|+ ..|+|+||++..+
T Consensus 306 v~p--~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 306 VKP--LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp CCC--GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred CCC--HHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 788--566799632001388999998689999999999999999999999987699831641897775
No 2
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=157.84 Aligned_cols=93 Identities=34% Similarity=0.600 Sum_probs=83.8
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHCCCCCCC
Q ss_conf 51699999431889993206999969908999215998532202110243000462135553013554310100148876
Q 003664 93 NGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKP 172 (805)
Q Consensus 93 ~~~~G~L~K~~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 172 (805)
+.++|||+|+++++|+|++|||||.++.|+||+.+.+ ....|
T Consensus 1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~--------------------------------------~~~~~ 42 (94)
T 2rsg_A 1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDE--------------------------------------TEYGC 42 (94)
T ss_dssp CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTG--------------------------------------GGTCC
T ss_pred CCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCC--------------------------------------CCCCC
T ss_conf 9788999996899898058999998999999985244--------------------------------------56552
Q ss_pred CCEEECCCCEEEECCCCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 508994760798458999858999589279998299989999999999989
Q 003664 173 FGEVHLKVSSIRDSKSDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVK 223 (805)
Q Consensus 173 ~G~I~L~~ssi~~s~~d~~rF~I~t~~k~~~LrA~s~~dr~~Wi~aL~~a~ 223 (805)
.|.|+|..+.+.....+++.|.|.++.++|+|+|+|.+|+++||+||+.|+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 43 RGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp SEEEETTTCEEEECSSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred EEEEECCEEEEECCCCCCEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 256721024420476662269999699699998899999999999999646
No 3
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=1.00 E-value=1 Score=151.08 Aligned_cols=96 Identities=33% Similarity=0.738 Sum_probs=84.8
Q ss_pred EEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHCCCCCCCCC
Q ss_conf 69999943188999320699996990899921599853220211024300046213555301355431010014887650
Q 003664 95 ISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLNRKPFG 174 (805)
Q Consensus 95 ~~G~L~K~~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 174 (805)
++|||+|+++..++|++|||||.++.|+||+++.+. ...|+|
T Consensus 1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~--------------------------------------~~~~~g 42 (103)
T 3rcp_A 1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDV--------------------------------------CKGSKG 42 (103)
T ss_dssp CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC-----------------------------------------CCCSC
T ss_pred CCEEEEECCCCCCCEECEEEEEECCEEEEEECCCCC--------------------------------------CCCCCC
T ss_conf 954999715888982155999989999999648856--------------------------------------678634
Q ss_pred EEECCCCEEEECCCCCCCEEEEEC-CEEEEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899476079845899985899958-927999829998999999999998986553
Q 003664 175 EVHLKVSSIRDSKSDDKRFSIFTG-TKRLHLRAETREDRFAWMEALQAVKDMFPR 228 (805)
Q Consensus 175 ~I~L~~ssi~~s~~d~~rF~I~t~-~k~~~LrA~s~~dr~~Wi~aL~~a~~~~~~ 228 (805)
.|+|..++|.....+++.|.|.++ .++|+|+|+|.+|+++||.||+.|+.....
T Consensus 43 ~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~~ 97 (103)
T 3rcp_A 43 SIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTD 97 (103)
T ss_dssp EEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCCCCC
T ss_pred EEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 8981456999768999549999379978999999999999999999999975547
No 4
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=150.85 Aligned_cols=103 Identities=29% Similarity=0.550 Sum_probs=88.3
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEEE--CCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHC
Q ss_conf 78885169999943188999320699996--9908999215998532202110243000462135553013554310100
Q 003664 89 DIVGNGISGVLYKWVNYGKGWRPRWFVLQ--DGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (805)
Q Consensus 89 ~~~~~~~~G~L~K~~n~~kgWk~RwFvL~--~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 166 (805)
+...+.++|||+|+++..++|++|||||. ++.|+||+.+.+
T Consensus 4 ~~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~------------------------------------- 46 (120)
T 2d9x_A 4 GSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQS------------------------------------- 46 (120)
T ss_dssp CCSCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGG-------------------------------------
T ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCC-------------------------------------
T ss_conf 8899728999996489999853799999899999999855763-------------------------------------
Q ss_pred CCCCCCCCEEECCCCEEEECCCCCCCEEEEECC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 148876508994760798458999858999589-279998299989999999999989865535
Q 003664 167 LLNRKPFGEVHLKVSSIRDSKSDDKRFSIFTGT-KRLHLRAETREDRFAWMEALQAVKDMFPRM 229 (805)
Q Consensus 167 ~~~~~p~G~I~L~~ssi~~s~~d~~rF~I~t~~-k~~~LrA~s~~dr~~Wi~aL~~a~~~~~~~ 229 (805)
....|+|.|+|..++|.....+.+.|.|.++. ++|+|+|+|.+|+++||.||+.++......
T Consensus 47 -~~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 47 -RNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp -SSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCEEECCEEEEEECCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -588766669865489975689998999985899889998799999999999999999986642
No 5
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=149.29 Aligned_cols=96 Identities=13% Similarity=0.195 Sum_probs=81.0
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 88851699999431889993206999969908999215998532202110243000462135553013554310100148
Q 003664 90 IVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLN 169 (805)
Q Consensus 90 ~~~~~~~G~L~K~~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 169 (805)
..++.++|||+|++...+.||+|||||+++.|+|||.+.+
T Consensus 15 ~~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d---------------------------------------- 54 (149)
T 1x1f_A 15 ALPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKS---------------------------------------- 54 (149)
T ss_dssp SSCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSC----------------------------------------
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCC----------------------------------------
T ss_conf 9982479999981899998314899991999999957886----------------------------------------
Q ss_pred CCCCCEEECCCCEEEEC--CCC--CCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 87650899476079845--899--985899958927999829998999999999998986
Q 003664 170 RKPFGEVHLKVSSIRDS--KSD--DKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDM 225 (805)
Q Consensus 170 ~~p~G~I~L~~ssi~~s--~~d--~~rF~I~t~~k~~~LrA~s~~dr~~Wi~aL~~a~~~ 225 (805)
..+.|.|+|..+++... ..+ .+.|.|.++.++|+|+|+|.+||++||.||+.++..
T Consensus 55 ~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~ 114 (149)
T 1x1f_A 55 IIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL 114 (149)
T ss_dssp SSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEECCCCEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 666767978886698522688786868999759977999869999999999999999734
No 6
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=147.74 Aligned_cols=97 Identities=29% Similarity=0.374 Sum_probs=80.9
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 88851699999431889993206999969908999215998532202110243000462135553013554310100148
Q 003664 90 IVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLN 169 (805)
Q Consensus 90 ~~~~~~~G~L~K~~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 169 (805)
...+.++|||+|++ ..|+|++|||||.++.|+|||++.+
T Consensus 5 ~~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~---------------------------------------- 43 (130)
T 1v88_A 5 SSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKN---------------------------------------- 43 (130)
T ss_dssp SSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSSS----------------------------------------
T ss_pred CCCEEEEEEEEEEC-CCCCCEEEEEEEECCEEEEECCCCC----------------------------------------
T ss_conf 88667984789858-9888468999997999999878887----------------------------------------
Q ss_pred CCCCCEEECCCCEEEECCCC--CCCEEEEECC------------------------EEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 87650899476079845899--9858999589------------------------279998299989999999999989
Q 003664 170 RKPFGEVHLKVSSIRDSKSD--DKRFSIFTGT------------------------KRLHLRAETREDRFAWMEALQAVK 223 (805)
Q Consensus 170 ~~p~G~I~L~~ssi~~s~~d--~~rF~I~t~~------------------------k~~~LrA~s~~dr~~Wi~aL~~a~ 223 (805)
..|.|.|+|..++|.+..++ ...|.|.++. ++|+|+|+|++|+++||+||+.|+
T Consensus 44 ~~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~ 123 (130)
T 1v88_A 44 GQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELAL 123 (130)
T ss_dssp CCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 77238998488899877877897399998178654322367764413400026883689998899999999999999998
Q ss_pred HHCC
Q ss_conf 8655
Q 003664 224 DMFP 227 (805)
Q Consensus 224 ~~~~ 227 (805)
.+-+
T Consensus 124 ~~~~ 127 (130)
T 1v88_A 124 KSGP 127 (130)
T ss_dssp TTTT
T ss_pred HCCC
T ss_conf 4188
No 7
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=143.59 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCCEEEEEEEE---CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHC
Q ss_conf 8885169999943---1889993206999969908999215998532202110243000462135553013554310100
Q 003664 90 IVGNGISGVLYKW---VNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (805)
Q Consensus 90 ~~~~~~~G~L~K~---~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 166 (805)
..++.++|||+|+ +..+++|++|||||++|.|+||+....
T Consensus 298 ~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~------------------------------------- 340 (407)
T 4h8s_A 298 RNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAV------------------------------------- 340 (407)
T ss_dssp CSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCS-------------------------------------
T ss_pred CCCCEEECEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCC-------------------------------------
T ss_conf 7852365400303127998887437899998998999957887-------------------------------------
Q ss_pred CCCCCCCCEEECCCCEEEECCCCCCC--EEEEECC--EEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 14887650899476079845899985--8999589--279998299989999999999989865
Q 003664 167 LLNRKPFGEVHLKVSSIRDSKSDDKR--FSIFTGT--KRLHLRAETREDRFAWMEALQAVKDMF 226 (805)
Q Consensus 167 ~~~~~p~G~I~L~~ssi~~s~~d~~r--F~I~t~~--k~~~LrA~s~~dr~~Wi~aL~~a~~~~ 226 (805)
.+.+.|.|..|+|+.....+++ |.|.+++ ++|+|+|+|.+||..||.||+.++...
T Consensus 341 ----~~~~~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 341 ----AGGLIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp ----SCCCCBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred ----CCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf ----887078778308987888889835999946999569997199999999999999999986
No 8
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=143.25 Aligned_cols=101 Identities=23% Similarity=0.460 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEEEECC--CCCCCEEEEEEEECC--EEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCH
Q ss_conf 7888516999994318--899932069999699--089992159985322021102430004621355530135543101
Q 003664 89 DIVGNGISGVLYKWVN--YGKGWRPRWFVLQDG--VLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTS 164 (805)
Q Consensus 89 ~~~~~~~~G~L~K~~n--~~kgWk~RwFvL~~g--~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~ 164 (805)
+...+.++|||+|++. ..++|++|||||.++ .|+||+++.+
T Consensus 4 ~~~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~----------------------------------- 48 (119)
T 2dhk_A 4 GSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD----------------------------------- 48 (119)
T ss_dssp SCSCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTC-----------------------------------
T ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCC-----------------------------------
T ss_conf 889985789899347999888824689999799648999899998-----------------------------------
Q ss_pred HCCCCCCCCCEEECCCCEEEECC-CCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00148876508994760798458-999858999589279998299989999999999989865535
Q 003664 165 QRLLNRKPFGEVHLKVSSIRDSK-SDDKRFSIFTGTKRLHLRAETREDRFAWMEALQAVKDMFPRM 229 (805)
Q Consensus 165 ~~~~~~~p~G~I~L~~ssi~~s~-~d~~rF~I~t~~k~~~LrA~s~~dr~~Wi~aL~~a~~~~~~~ 229 (805)
.+|+|.|+|..+++.... .....|.|.++.++|+|+|+|.+|+.+||.||+.++..+...
T Consensus 49 -----~~~~g~I~L~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 49 -----ANPLDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp -----CSCSEEEEGGGCEEEECTTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----CCCCCEEECCCCEEEECCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -----5412189888779975578989999998199479998799999999999999999996378
No 9
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=1.00 E-value=1 Score=143.19 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCCEEEEEEEECC-----CCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHC
Q ss_conf 8516999994318-----89993206999969908999215998532202110243000462135553013554310100
Q 003664 92 GNGISGVLYKWVN-----YGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQR 166 (805)
Q Consensus 92 ~~~~~G~L~K~~n-----~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 166 (805)
.++++|||.|++. ..++||+|||||.++.|+|||++.+.
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~------------------------------------ 45 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFER------------------------------------ 45 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTT------------------------------------
T ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC------------------------------------
T ss_conf 64799999986689888666887417999919989898057766------------------------------------
Q ss_pred CCCCCCCCEEECCCCEEEECC---CC-C-------------------------CCEEEEECCEEEEEECCCHHHHHHHHH
Q ss_conf 148876508994760798458---99-9-------------------------858999589279998299989999999
Q 003664 167 LLNRKPFGEVHLKVSSIRDSK---SD-D-------------------------KRFSIFTGTKRLHLRAETREDRFAWME 217 (805)
Q Consensus 167 ~~~~~p~G~I~L~~ssi~~s~---~d-~-------------------------~rF~I~t~~k~~~LrA~s~~dr~~Wi~ 217 (805)
....+|+|.|+|..+.+.+.. ++ . ..|.|+++.++|+|+|+|.+||++||+
T Consensus 46 ~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~ 125 (169)
T 1btk_A 46 GRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125 (169)
T ss_dssp TEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHH
T ss_conf 77873206998860688885267778611024444567654333222234566347999689549998499999999999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99998986553
Q 003664 218 ALQAVKDMFPR 228 (805)
Q Consensus 218 aL~~a~~~~~~ 228 (805)
||+.++...+.
T Consensus 126 aI~~~i~~n~~ 136 (169)
T 1btk_A 126 QLKNVIRYNSD 136 (169)
T ss_dssp HHHHHHTTCSC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987901
No 10
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=1.00 E-value=1 Score=140.73 Aligned_cols=98 Identities=16% Similarity=0.336 Sum_probs=81.6
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 88851699999431889993206999969908999215998532202110243000462135553013554310100148
Q 003664 90 IVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVSEETERGCKVIGEESTRIISKRKHKKETTSQRLLN 169 (805)
Q Consensus 90 ~~~~~~~G~L~K~~n~~kgWk~RwFvL~~g~L~Yyk~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 169 (805)
.. ++++|||+|++++.|+|++|||||.+..|+|||.+.. .+.
T Consensus 4 ~~-~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~-------------------------------------~~d 45 (120)
T 4a6h_A 4 FT-EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADR-------------------------------------KKD 45 (120)
T ss_dssp CC-CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCT-------------------------------------TTC
T ss_pred CC-CCEEEEEEECCCCCCCCCCEEEEEECCEEEEECCCCC-------------------------------------CCC
T ss_conf 85-6179999976888888700799995999989817876-------------------------------------767
Q ss_pred CCCCCEEECCCCEEEECCC-----------CCCCEEEEECC-------EEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8765089947607984589-----------99858999589-------27999829998999999999998986
Q 003664 170 RKPFGEVHLKVSSIRDSKS-----------DDKRFSIFTGT-------KRLHLRAETREDRFAWMEALQAVKDM 225 (805)
Q Consensus 170 ~~p~G~I~L~~ssi~~s~~-----------d~~rF~I~t~~-------k~~~LrA~s~~dr~~Wi~aL~~a~~~ 225 (805)
..|.|.|.|..|+|..... ....|.|.+.. ++|+|+|+|.+|+++||+||+.+..+
T Consensus 46 ~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~~ 119 (120)
T 4a6h_A 46 LVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTST 119 (120)
T ss_dssp CSCSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 77349998899799870666432223345778379999478885347547999869999999999999998616
Done!