Query 003666
Match_columns 804
No_of_seqs 150 out of 222
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2293 Daxx-interacting prote 100.0 1.8E-51 4E-56 450.0 16.7 168 627-796 373-546 (547)
2 cd00060 FHA Forkhead associate 99.2 5.7E-11 1.2E-15 102.5 10.7 92 683-780 4-101 (102)
3 PF00498 FHA: FHA domain; Int 99.2 2.5E-11 5.3E-16 100.3 6.1 67 700-773 1-68 (68)
4 PF13325 MCRS_N: N-terminal re 99.0 1.4E-10 3E-15 117.6 3.3 68 605-672 122-194 (199)
5 COG5025 Transcription factor o 98.9 3.3E-10 7.2E-15 130.0 2.1 102 679-783 70-190 (610)
6 TIGR03354 VI_FHA type VI secre 98.6 1.3E-07 2.8E-12 104.5 9.0 89 688-782 14-104 (396)
7 smart00240 FHA Forkhead associ 98.3 1.6E-06 3.5E-11 67.9 5.4 51 700-756 1-52 (52)
8 COG1716 FOG: FHA domain [Signa 98.0 2.5E-05 5.5E-10 75.7 9.4 91 683-783 74-166 (191)
9 PLN02927 antheraxanthin epoxid 97.8 5.4E-05 1.2E-09 89.0 8.1 79 693-774 549-636 (668)
10 COG3456 Predicted component of 97.5 0.00023 5E-09 79.5 7.1 86 691-783 19-106 (430)
11 TIGR01663 PNK-3'Pase polynucle 95.2 0.029 6.2E-07 65.1 6.0 79 688-775 22-101 (526)
12 KOG0245 Kinesin-like protein [ 93.7 0.18 4E-06 62.1 8.2 97 681-784 452-557 (1221)
13 KOG1881 Anion exchanger adapto 92.2 0.14 3.1E-06 61.1 4.4 80 696-782 175-265 (793)
14 KOG1882 Transcriptional regula 86.7 1.1 2.3E-05 48.3 5.3 53 721-773 211-276 (293)
15 TIGR02500 type_III_yscD type I 86.2 2.6 5.6E-05 47.5 8.3 88 684-780 4-94 (410)
16 KOG2294 Transcription factor o 79.1 3 6.5E-05 46.4 5.3 92 690-781 59-162 (454)
17 PF03166 MH2: MH2 domain; Int 58.3 41 0.00088 34.2 7.7 66 692-757 21-96 (181)
18 KOG0241 Kinesin-like protein [ 57.5 49 0.0011 42.1 9.3 82 691-783 461-542 (1714)
19 PF07273 DUF1439: Protein of u 54.0 13 0.00028 36.7 3.4 76 666-745 3-91 (152)
20 PRK10598 lipoprotein; Provisio 51.5 22 0.00048 37.0 4.6 75 666-745 29-117 (186)
21 KOG0615 Serine/threonine prote 42.7 26 0.00056 40.8 3.8 78 697-774 63-147 (475)
22 PRK11507 ribosome-associated p 40.1 46 0.001 29.9 4.2 33 747-780 37-69 (70)
23 KOG1880 Nuclear inhibitor of p 37.7 39 0.00084 37.9 4.1 69 700-774 40-110 (337)
24 PRK15367 type III secretion sy 30.3 61 0.0013 37.4 4.3 85 686-786 14-98 (395)
25 KOG2293 Daxx-interacting prote 27.3 34 0.00075 40.6 1.7 103 605-716 330-453 (547)
26 COG3354 FlaG Putative archaeal 26.7 74 0.0016 32.4 3.7 35 738-772 73-126 (154)
27 COG2501 S4-like RNA binding pr 26.3 96 0.0021 28.2 4.0 33 748-781 38-70 (73)
28 PF07610 DUF1573: Protein of u 24.0 1.3E+02 0.0029 24.0 4.1 25 738-762 1-25 (45)
29 PF06905 FAIM1: Fas apoptotic 23.6 15 0.00033 37.8 -1.7 58 744-801 28-102 (177)
30 TIGR02988 YaaA_near_RecF S4 do 21.7 1E+02 0.0023 25.5 3.2 25 747-772 34-58 (59)
31 cd00050 MH2 MH2 domain; C term 20.9 1.4E+02 0.0031 31.0 4.5 49 723-772 59-117 (176)
32 smart00524 DWB Domain B in dwa 20.3 1.4E+02 0.0031 30.8 4.4 43 729-772 64-112 (171)
No 1
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-51 Score=450.03 Aligned_cols=168 Identities=60% Similarity=0.891 Sum_probs=162.7
Q ss_pred CCCCCcCcHHHHHhhCCCCCcch------hhhcccHHHHHHHHHHHhhhhhHhHHhhcCCcceEEEEecceeEEeecCeE
Q 003666 627 DDVPYFSDIEAMILDMDLDPDDQ------VSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEV 700 (804)
Q Consensus 627 d~~psFsD~E~~Ild~dL~P~Dq------vsr~q~~~~kr~IrrLEqe~~s~~~r~i~~~~AlAvL~Gr~~~YyIrs~eV 700 (804)
++++ +|+|+||+|+||.|.|| ++.++.+..++.|.||||.+++||||+|+.+||||+|+|+..+||||++||
T Consensus 373 E~Le--~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EV 450 (547)
T KOG2293|consen 373 EELE--SDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEV 450 (547)
T ss_pred cccc--chHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcce
Confidence 5566 99999999999999998 466788899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeEEEcCeEEEEE
Q 003666 701 LLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFE 780 (804)
Q Consensus 701 tIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~~~~L~sgsLIEIggi~fiFl 780 (804)
+|||+|.+..|||||++|||++|||||||+|||..+|+|+|+|+||++|+|||.+|.+|++++|+++|||||.|++|+|+
T Consensus 451 tlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 451 TLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred EeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCceEEeccCcEEEEccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChHhHHHHHhhhhcc
Q 003666 781 TNQTCVKRYLDSIMKE 796 (804)
Q Consensus 781 lN~~~V~~~l~~~~k~ 796 (804)
+|+++|.+||+++.|.
T Consensus 531 ~N~~~v~~~l~~~~K~ 546 (547)
T KOG2293|consen 531 INQEAVGQYLKENAKR 546 (547)
T ss_pred ecHHHHHHHHHhcccc
Confidence 9999999999999875
No 2
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.24 E-value=5.7e-11 Score=102.46 Aligned_cols=92 Identities=26% Similarity=0.445 Sum_probs=80.3
Q ss_pred eEEEEe--cceeEEeec-CeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecC-CCcEEEEecccCCeEECcEEcCC
Q 003666 683 FAILYG--RHSKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPP 758 (804)
Q Consensus 683 lAvL~G--r~~~YyIrs-~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~-dg~F~L~NlGKngI~VNGk~I~~ 758 (804)
|.++.| ...+|.|+. .+++|||+... +||-|. ...|||+||+|+++. .+.|++.+.++++++|||+++..
T Consensus 4 L~~~~~~~~~~~~~l~~~~~~~iGr~~~~--~~i~l~----~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~ 77 (102)
T cd00060 4 LVVLSGDASGRRYYLDPGGTYTIGRDSDN--CDIVLD----DPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSP 77 (102)
T ss_pred EEEecCCCceeEEEECCCCeEEECcCCCc--CCEEcC----CCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCC
Confidence 455666 689999999 99999998886 777773 799999999999999 67788888889999999999999
Q ss_pred CCccccCCCCeEEEc--CeEEEEE
Q 003666 759 RQSQGLGSSCLIEIR--GLAFIFE 780 (804)
Q Consensus 759 G~~~~L~sgsLIEIg--gi~fiFl 780 (804)
+.++.|.+|++|.|+ ...|+|.
T Consensus 78 ~~~~~l~~gd~i~ig~~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGNTSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECCeEEEEEEe
Confidence 999999999999999 6666653
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.20 E-value=2.5e-11 Score=100.32 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=58.6
Q ss_pred EEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCCccccCCCCeEEEc
Q 003666 700 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSCLIEIR 773 (804)
Q Consensus 700 VtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~I~~G~~~~L~sgsLIEIg 773 (804)
|+|||+ ...||-|. ...|||+||.|.++.++.|+|+++| +|++||||+++.+++++.|++|++|.||
T Consensus 1 ~~iGR~---~~~di~l~----~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS---PDCDIVLP----DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS---TTSSEEET----STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCC---CCCCEEEC----CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 689999 45777773 5679999999999988899999996 8999999999999999999999999987
No 4
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=99.01 E-value=1.4e-10 Score=117.63 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCcCcHHHHHhhCCC-CCcch----hhhcccHHHHHHHHHHHhhhhhH
Q 003666 605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDL-DPDDQ----VSKYQHEDTRRAIIRLEQGAHSY 672 (804)
Q Consensus 605 ~~~~~~y~ll~DQ~~~~~~s~~d~~psFsD~E~~Ild~dL-~P~Dq----vsr~q~~~~kr~IrrLEqe~~s~ 672 (804)
++.+++|+||+||.+++++..++.+++|||+|++|+|.+| .|+|+ +++.++|++||+||+||+|+.+|
T Consensus 122 W~lmkqy~LL~DQ~v~~~~~~~~~~~sfsDaEd~i~d~~l~~~~de~l~~el~~~dr~~k~~ir~lE~el~~w 194 (199)
T PF13325_consen 122 WRLMKQYHLLPDQSVQPLPKQDDQVLSFSDAEDLIDDSELKDPRDEALEHELELADRRQKREIRQLENELSRW 194 (199)
T ss_pred HHHHHHhchhhccccCCCCCCCccccccccHHHHhhccccccCcccccchhhhHHhHHHHHHHHHHHHHhhhh
Confidence 3689999999999999999874589999999999999999 68888 47889999999999999999998
No 5
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=98.92 E-value=3.3e-10 Score=129.99 Aligned_cols=102 Identities=19% Similarity=0.115 Sum_probs=93.5
Q ss_pred CCcceEEEEecceeEEeecCeEEeCCCCCC---------------CCcceecCCCCCCccchhhceeeeecCC-CcEEEE
Q 003666 679 SHGAFAILYGRHSKHYIKKPEVLLGRATED---------------VVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLK 742 (804)
Q Consensus 679 ~~~AlAvL~Gr~~~YyIrs~eVtIGR~T~~---------------~~VDIDLs~EGpaskISRrQA~Ikl~~d-g~F~L~ 742 (804)
..+|||+|+|-.|+||++..+|.+||..+- +.+++++ |++++++|+|+.|+++.+ +.|+|+
T Consensus 70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~ 146 (610)
T COG5025 70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIK 146 (610)
T ss_pred HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEE
Confidence 458999999999999999999999996553 4577888 999999999999999985 899999
Q ss_pred ecccCCeEECcEEcCCCC---ccccCCCCeEEEcCeEEEEEeCh
Q 003666 743 NLGKCPILVNNKEVPPRQ---SQGLGSSCLIEIRGLAFIFETNQ 783 (804)
Q Consensus 743 NlGKngI~VNGk~I~~G~---~~~L~sgsLIEIggi~fiFllN~ 783 (804)
.+||+++.|+|..+.-|. ...|..|+++++++.+++|.++.
T Consensus 147 i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~ 190 (610)
T COG5025 147 IEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPS 190 (610)
T ss_pred EeccCCccccceeeccCCCccceeeccccccccccccccccCcc
Confidence 999999999999998876 79999999999999999999875
No 6
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.59 E-value=1.3e-07 Score=104.47 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=77.7
Q ss_pred ecceeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEEC--cEEcCCCCccccC
Q 003666 688 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVN--NKEVPPRQSQGLG 765 (804)
Q Consensus 688 Gr~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VN--Gk~I~~G~~~~L~ 765 (804)
|....|.+.....+|||... .|+=| ..+...|||+||+|.++ +|.|+|+.+++||+||| |.++..|..++|.
T Consensus 14 g~~~~~~f~~~~~~IGR~~~---~d~~l--~d~~~~VS~~Ha~I~~~-~g~~~l~DlStNGT~VN~sg~~l~~~~~~~L~ 87 (396)
T TIGR03354 14 GIAAQKTFGTNGGTIGRSED---CDWVL--PDPERHVSGRHARIRYR-DGAYLLTDLSTNGVFLNGSGSPLGRGNPVRLE 87 (396)
T ss_pred CcceEEEECCCCEEEecCCC---CCEEe--CCCCCCcchhhcEEEEE-CCEEEEEECCCCCeEECCCCCCCCCCCceEcC
Confidence 55678888899999999864 34444 34566799999999987 68899999988999999 9999999999999
Q ss_pred CCCeEEEcCeEEEEEeC
Q 003666 766 SSCLIEIRGLAFIFETN 782 (804)
Q Consensus 766 sgsLIEIggi~fiFllN 782 (804)
+|++|.||...+.|.+.
T Consensus 88 ~GD~I~iG~~~lrv~~~ 104 (396)
T TIGR03354 88 QGDRLRLGDYEIRVSLG 104 (396)
T ss_pred CCCEEEECCEEEEEEeC
Confidence 99999999999999995
No 7
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.26 E-value=1.6e-06 Score=67.89 Aligned_cols=51 Identities=45% Similarity=0.646 Sum_probs=42.2
Q ss_pred EEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEc
Q 003666 700 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEV 756 (804)
Q Consensus 700 VtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~I 756 (804)
++|||... ..||-|. ++ .|||+||.|+++.++.|+|++.+ ++++||||++|
T Consensus 1 ~~iGr~~~--~~~i~~~--~~--~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSE--DCDIQLP--GP--SISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCC--CCCEEeC--CC--CcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 47999876 3455552 33 39999999999998899999999 89999999975
No 8
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-05 Score=75.74 Aligned_cols=91 Identities=23% Similarity=0.240 Sum_probs=69.7
Q ss_pred eEEEEecceeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCCc
Q 003666 683 FAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQS 761 (804)
Q Consensus 683 lAvL~Gr~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlG-KngI~VNGk~I~~G~~ 761 (804)
..+.......+......++|||. ...||=| +...|||+||.|+++.+. |+++.+| .||.||||.++.+ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~tigr~---~~~~i~~----~~~~vSR~Ha~l~~~~~~-~~~~d~~S~nGt~vn~~~v~~--~ 143 (191)
T COG1716 74 VTIGLDEGSVIVLGEPVTTIGRD---PDNDIVL----DDDVVSRRHAELRREGNE-VFLEDLGSTNGTYVNGEKVRQ--R 143 (191)
T ss_pred EEEecccCcccccccceEEeccC---CCCCEEc----CCCccccceEEEEEeCCc-eEEEECCCCcceEECCeEccC--c
Confidence 33334445567777779999992 2334434 568999999999999766 5557777 5999999999998 8
Q ss_pred cccCCCCeEEEcCeEE-EEEeCh
Q 003666 762 QGLGSSCLIEIRGLAF-IFETNQ 783 (804)
Q Consensus 762 ~~L~sgsLIEIggi~f-iFllN~ 783 (804)
+.|.+|++|.|+.... .+.+..
T Consensus 144 ~~l~~gd~i~i~~~~~~~~~~~~ 166 (191)
T COG1716 144 VLLQDGDVIRLGGTLAERLRIIL 166 (191)
T ss_pred EEcCCCCEEEECccceeeEeecc
Confidence 9999999999999888 555543
No 9
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.77 E-value=5.4e-05 Score=89.03 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=64.7
Q ss_pred EEe---ecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEeccc-CCeEECcEE-----cCCCCccc
Q 003666 693 HYI---KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGK-CPILVNNKE-----VPPRQSQG 763 (804)
Q Consensus 693 YyI---rs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGK-ngI~VNGk~-----I~~G~~~~ 763 (804)
+.+ .+.-.+|||.+.....+.-+- =+...||+.||.|.++ ++.|||+.++. ||.||||.. +.++.+++
T Consensus 549 ~~l~~~~~~p~~iG~~~~~~~~~~~i~--i~~~~vS~~Ha~i~~~-~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~ 625 (668)
T PLN02927 549 LCLTKDEDQPCIVGSEPDQDFPGMRIV--IPSSQVSKMHARVIYK-DGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPAR 625 (668)
T ss_pred eeeecCCCCCeEecCCCCcCCCCceEE--ecCCccChhHeEEEEE-CCEEEEEECCCCCccEEeCCCCceEecCCCCceE
Confidence 555 677789999876443222111 2568999999999999 88999999997 999998888 67899999
Q ss_pred cCCCCeEEEcC
Q 003666 764 LGSSCLIEIRG 774 (804)
Q Consensus 764 L~sgsLIEIgg 774 (804)
|++|++|+||.
T Consensus 626 l~~~d~I~~g~ 636 (668)
T PLN02927 626 FRSSDIIEFGS 636 (668)
T ss_pred eCCCCEEEeCC
Confidence 99999999998
No 10
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.46 E-value=0.00023 Score=79.50 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=72.0
Q ss_pred eeEEeecCeEEeCCCCC-CCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCc-cccCCCC
Q 003666 691 SKHYIKKPEVLLGRATE-DVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQS-QGLGSSC 768 (804)
Q Consensus 691 ~~YyIrs~eVtIGR~T~-~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~~-~~L~sgs 768 (804)
..+......-+|||+.+ +|.+ .-+-..||++||+|.++ +|.|+|+....++.+|||..++.|.. .+|.+|+
T Consensus 19 aq~~f~~~~g~IGrs~dcdW~i------~D~~~~VS~~Hc~I~~~-dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd 91 (430)
T COG3456 19 AQKLFDRGGGVIGRSPDCDWQI------DDPERFVSKQHCTISYR-DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQGD 91 (430)
T ss_pred hhhhhhcCCcccccCCCCCccc------cCcccccchhheEEEec-CCeEEEEecCCCceeecccccCCCCCccccccCC
Confidence 34455566788999644 2333 34678999999999999 78899999999999999999999987 9999999
Q ss_pred eEEEcCeEEEEEeCh
Q 003666 769 LIEIRGLAFIFETNQ 783 (804)
Q Consensus 769 LIEIggi~fiFllN~ 783 (804)
.|.||+..|.-.+..
T Consensus 92 ~i~iG~y~i~V~l~~ 106 (430)
T COG3456 92 EILIGRYIIRVHLSR 106 (430)
T ss_pred EEeeccEEEEEEecc
Confidence 999999999888853
No 11
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.21 E-value=0.029 Score=65.07 Aligned_cols=79 Identities=28% Similarity=0.339 Sum_probs=64.2
Q ss_pred ecceeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEECcEEcCCCCccccCC
Q 003666 688 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPRQSQGLGS 766 (804)
Q Consensus 688 Gr~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~d-g~F~L~NlGKngI~VNGk~I~~G~~~~L~s 766 (804)
+++-...+....|+|||..+..-. -++-||+|-.++-+.+ |...++.+|.||.-|||+.+.+|..+.|.+
T Consensus 22 ~~~~~~~~~~~~~~~gr~pet~i~---------d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~ 92 (526)
T TIGR01663 22 AEHHFIHLDAGALFLGRGPETGIR---------DRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGH 92 (526)
T ss_pred CCCCeeccCCCceEEccCcccccc---------hhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecC
Confidence 344444555678899997665433 4677999999998876 788899999999999999999999999999
Q ss_pred CCeEEEcCe
Q 003666 767 SCLIEIRGL 775 (804)
Q Consensus 767 gsLIEIggi 775 (804)
|++++|=--
T Consensus 93 g~~l~~v~~ 101 (526)
T TIGR01663 93 GDLLEIVNG 101 (526)
T ss_pred CCEEEEecc
Confidence 999998533
No 12
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.69 E-value=0.18 Score=62.07 Aligned_cols=97 Identities=25% Similarity=0.268 Sum_probs=77.7
Q ss_pred cceEEEEecc--------eeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEE
Q 003666 681 GAFAILYGRH--------SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILV 751 (804)
Q Consensus 681 ~AlAvL~Gr~--------~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~d-g~F~L~NlGKngI~V 751 (804)
+-.+-|.+-+ .-|||+.=+..|||......-||=|+ | ..|--+|++|+.... .-..|..-+.--+||
T Consensus 452 kk~phLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~Ls--G--~~I~~qHC~i~~~~g~~~vtl~p~e~aetyV 527 (1221)
T KOG0245|consen 452 KKTPHLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLS--G--QLIREQHCSIRNEGGNDVVTLEPCEDAETYV 527 (1221)
T ss_pred ccCcceeccCCCchhhccEEEEeccCceecCCCCcccCCceEec--c--hhhhhhceEEEecCCCceEEeccCCccceeE
Confidence 3445555544 56999999999999999999999996 3 357789999987743 248888889999999
Q ss_pred CcEEcCCCCccccCCCCeEEEcCeEEEEEeChH
Q 003666 752 NNKEVPPRQSQGLGSSCLIEIRGLAFIFETNQT 784 (804)
Q Consensus 752 NGk~I~~G~~~~L~sgsLIEIggi~fiFllN~~ 784 (804)
|||.|. ++..|++|+.|=+|| .-+|..|..
T Consensus 528 NGk~v~--ep~qL~~GdRiilG~-~H~frfn~P 557 (1221)
T KOG0245|consen 528 NGKLVT--EPTQLRSGDRIILGG-NHVFRFNHP 557 (1221)
T ss_pred ccEEcC--CcceeccCCEEEEcC-ceeEEecCH
Confidence 999997 588999999999998 455665544
No 13
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=92.25 E-value=0.14 Score=61.08 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=66.7
Q ss_pred ecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCC-c---------EEEEeccc-CCeEECcEEcCCCCcccc
Q 003666 696 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAG-S---------FHLKNLGK-CPILVNNKEVPPRQSQGL 764 (804)
Q Consensus 696 rs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg-~---------F~L~NlGK-ngI~VNGk~I~~G~~~~L 764 (804)
.+..++|||-+. -|+=| + ..-|||-||+|.|..+| . |||..+|. .|.|+|-.+|++-.=+++
T Consensus 175 ~~~~~~fgr~~~---cD~~~--e--HpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~ 247 (793)
T KOG1881|consen 175 GAAACLFGRLGG---CDVAL--E--HPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRD 247 (793)
T ss_pred cceeEEecccCC---Ccccc--c--cCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhh
Confidence 344578999763 34433 3 44699999999999753 5 99999998 999999999999999999
Q ss_pred CCCCeEEEcCeEEEEEeC
Q 003666 765 GSSCLIEIRGLAFIFETN 782 (804)
Q Consensus 765 ~sgsLIEIggi~fiFllN 782 (804)
+=|.++++||-.++|++-
T Consensus 248 ~Vg~v~~fggsTrl~i~Q 265 (793)
T KOG1881|consen 248 RVGHVARFGGSTRLYIFQ 265 (793)
T ss_pred hHHHHHHhcCceEEEEee
Confidence 999999999999999873
No 14
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=86.69 E-value=1.1 Score=48.29 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred CccchhhceeeeecC------CC------cEEEEeccc-CCeEECcEEcCCCCccccCCCCeEEEc
Q 003666 721 TNKISRRQAMINMDE------AG------SFHLKNLGK-CPILVNNKEVPPRQSQGLGSSCLIEIR 773 (804)
Q Consensus 721 askISRrQA~Ikl~~------dg------~F~L~NlGK-ngI~VNGk~I~~G~~~~L~sgsLIEIg 773 (804)
...-|.+||+|.|.. || .-||-.||. ||.|+|.++|.+-.-+.|..+++|-+|
T Consensus 211 hpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfg 276 (293)
T KOG1882|consen 211 HPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFG 276 (293)
T ss_pred CccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecCceeeec
Confidence 445689999999985 43 368889997 999999999999888999999999887
No 15
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=86.21 E-value=2.6 Score=47.53 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=62.2
Q ss_pred EEEEecc--eeEEeecCeEEeC-CCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCC
Q 003666 684 AILYGRH--SKHYIKKPEVLLG-RATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQ 760 (804)
Q Consensus 684 AvL~Gr~--~~YyIrs~eVtIG-R~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~ 760 (804)
-+|.|.+ ..+.+..-+.+|| |. ...||=| .-..|||+|++|....++ +.|..- ..++++||.++.-..
T Consensus 4 rvl~G~~~G~~~~L~~g~~~iG~~~---~~~di~L----~d~~~~~~h~~l~v~~~~-~~l~~~-~~~~~~~g~~~~~~~ 74 (410)
T TIGR02500 4 RVLSGPHRGAELPLPEGNLVLGTDA---ADCDIVL----SDGGIAAVHVSLHVRLEG-VTLAGA-VEPAWEEGGVLPDEE 74 (410)
T ss_pred EEecCCCCCcEEECCCCceEeccCC---CCcEEEe----CCCCccchheEEEEcCce-EEEecC-CcceeECCcccccCC
Confidence 4455543 5667777778999 76 3344445 356799999999999766 444422 234899995554444
Q ss_pred ccccCCCCeEEEcCeEEEEE
Q 003666 761 SQGLGSSCLIEIRGLAFIFE 780 (804)
Q Consensus 761 ~~~L~sgsLIEIggi~fiFl 780 (804)
-..|..+..|+++++.|.|=
T Consensus 75 g~~l~~~~~l~~g~~~~~~g 94 (410)
T TIGR02500 75 GTPLPSGTPLLVAGVAFALG 94 (410)
T ss_pred CCccCCCCceecceeEEecc
Confidence 55688999999999999993
No 16
>KOG2294 consensus Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=79.07 E-value=3 Score=46.38 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=75.6
Q ss_pred ceeEEeecCeEEeCCCCCC------CCccee--cCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEECcEEcCCC-
Q 003666 690 HSKHYIKKPEVLLGRATED------VVVDID--LGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPR- 759 (804)
Q Consensus 690 ~~~YyIrs~eVtIGR~T~~------~~VDID--Ls~EGpaskISRrQA~Ikl~~d-g~F~L~NlGKngI~VNGk~I~~G- 759 (804)
+|.|++....+++||.... ...+++ ....|+...++|.|+.|.+... ..|.+...|+++.+|.+..-..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~SY~~L 138 (454)
T KOG2294|consen 59 DFTYYVQKLHVILGRPGSSSNSSPSASSGVDVNVQDLGPTKAISRKHAKIFYDLGRQRFSLPVPGKNGAGVKPPYSYSGL 138 (454)
T ss_pred cceeeccchhhccccccccccccccccccccccccccCCcccccccccccccccccCCccccccccCCCCcCCccccccc
Confidence 7999999999999995332 122221 1123889999999999999986 79999999999888888877777
Q ss_pred --CccccCCCCeEEEcCeEEEEEe
Q 003666 760 --QSQGLGSSCLIEIRGLAFIFET 781 (804)
Q Consensus 760 --~~~~L~sgsLIEIggi~fiFll 781 (804)
..|.+..+..|.++++-+.|+.
T Consensus 139 I~mAI~~Sp~krLtLs~Iy~~i~~ 162 (454)
T KOG2294|consen 139 IAMAIRLSPGKRLTLGGIYFYILL 162 (454)
T ss_pred cccccccCCCcceeecCeeEEEEe
Confidence 5799999999999999999997
No 17
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=58.27 E-value=41 Score=34.19 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=37.2
Q ss_pred eEEeecCeEEe-CCCCCCCCcceecCCCC---CCccc--hhhc----eeeeecCCCcEEEEecccCCeEECcEEcC
Q 003666 692 KHYIKKPEVLL-GRATEDVVVDIDLGREG---RTNKI--SRRQ----AMINMDEAGSFHLKNLGKCPILVNNKEVP 757 (804)
Q Consensus 692 ~YyIrs~eVtI-GR~T~~~~VDIDLs~EG---paskI--SRrQ----A~Ikl~~dg~F~L~NlGKngI~VNGk~I~ 757 (804)
.|..++..|+| |-......-.+-|+..- ....+ -|+| .+|++..+|+.+|+|+++.+|||+...+.
T Consensus 21 ~f~~~~~~v~idG~~d~~~~~r~~Lg~~~n~~R~~~~~~~R~~IG~Gi~l~~~~~G~V~l~n~s~~pVFVqS~~~n 96 (181)
T PF03166_consen 21 AFKARSPSVIIDGFTDPSDGDRFCLGQLSNVNRDSKTEKIRRHIGKGIKLSYEEDGNVWLYNRSDSPVFVQSPTLN 96 (181)
T ss_dssp EEEEESSEEEEESSSSSSSSSEEECTT---TT--HHHHHHHTTCTT-EEEEEETTTEEEEEE-SSS-EEEE-HHHH
T ss_pred eeEccCCeEEEeeccCCCCCCcEecCccCCCCCChHHhhHHheecCcEEEEEecCCeEEEEECCCCCEEEccCCCC
Confidence 46677887765 43222233345563221 11112 2444 56777778999999999999999876543
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.48 E-value=49 Score=42.06 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=61.8
Q ss_pred eeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeE
Q 003666 691 SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLI 770 (804)
Q Consensus 691 ~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~~~~L~sgsLI 770 (804)
..||++..+ +|| .....||-|+ --.|=++|++|.+..+|..++.-+-.-.++|||+.+- .++.|.||+-|
T Consensus 461 lvyyl~~~t-lig---~~~~~~i~l~----glgi~p~h~vidI~~dg~l~~~p~~~~R~~VNGs~v~--~~t~L~~GdRi 530 (1714)
T KOG0241|consen 461 LVYYLKDHT-LIG---LFKSQDIQLS----GLGIQPKHCVIDIESDGELRLTPLLNARSCVNGSLVC--STTQLWHGDRI 530 (1714)
T ss_pred HHHhhcCce-eec---cccCcceeee----cCcccCccceeeeccCCcEEecccccceeeecCceec--cccccccCceE
Confidence 456766654 455 3345666664 2357799999999999998888887778999999885 57899999999
Q ss_pred EEcCeEEEEEeCh
Q 003666 771 EIRGLAFIFETNQ 783 (804)
Q Consensus 771 EIggi~fiFllN~ 783 (804)
-.|.--| |.+|-
T Consensus 531 LwGnnHF-FrvN~ 542 (1714)
T KOG0241|consen 531 LWGNNHF-FRVNL 542 (1714)
T ss_pred Eecccce-EEecC
Confidence 8876655 55553
No 19
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3L6I_B.
Probab=53.98 E-value=13 Score=36.68 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=46.6
Q ss_pred HhhhhhHhHHhhcCCcceEEEEe---c-ceeEEeecCeEEeCCCCCCC---CcceecC--C-CC--CCccchhhceeeee
Q 003666 666 EQGAHSYMQRAILSHGAFAILYG---R-HSKHYIKKPEVLLGRATEDV---VVDIDLG--R-EG--RTNKISRRQAMINM 733 (804)
Q Consensus 666 Eqe~~s~~~r~i~~~~AlAvL~G---r-~~~YyIrs~eVtIGR~T~~~---~VDIDLs--~-EG--paskISRrQA~Ikl 733 (804)
|++++.|+++-+ .|-+=.| - .+++-+.+..|.|||...+. ..|+++. . .| ++..--.--|..+|
T Consensus 3 E~eiq~~L~k~~----~~~k~~g~~gl~~~~v~l~~~~v~ig~~~~~~i~l~~~~~~~i~~~~~~~~~~~~l~~s~~p~Y 78 (152)
T PF07273_consen 3 EQEIQQYLAKKF----PYQKKVGIPGLFPADVTLSNPKVQIGRDDPDRIALSADADVSINSPLGPYPASGKLTLSGQPRY 78 (152)
T ss_dssp HHHHHHHHHCC------EEEEEEETTTEEEEEEEEEEEEEESSSSTT-EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhC----ChhhhcccCCeEEEEEEEcCceEecCCCCCCEEEEEEEEEEEEeccCCCcceEEEEEEEEEEEE
Confidence 566766655333 4444444 2 58899999999999877662 2333332 1 12 24444456678888
Q ss_pred cC-CCcEEEEecc
Q 003666 734 DE-AGSFHLKNLG 745 (804)
Q Consensus 734 ~~-dg~F~L~NlG 745 (804)
+. +|.+||+++=
T Consensus 79 D~~~~avyL~~l~ 91 (152)
T PF07273_consen 79 DAEKGAVYLKDLR 91 (152)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEccce
Confidence 86 4999998753
No 20
>PRK10598 lipoprotein; Provisional
Probab=51.53 E-value=22 Score=36.99 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=42.3
Q ss_pred HhhhhhHhHHhhcCCcceEEEEe----cceeEEeecCeEEeCCCCCC-------CCcceecCCCCC--Cccchhhceeee
Q 003666 666 EQGAHSYMQRAILSHGAFAILYG----RHSKHYIKKPEVLLGRATED-------VVVDIDLGREGR--TNKISRRQAMIN 732 (804)
Q Consensus 666 Eqe~~s~~~r~i~~~~AlAvL~G----r~~~YyIrs~eVtIGR~T~~-------~~VDIDLs~EGp--askISRrQA~Ik 732 (804)
|+|++.|++.-+. |-+=.| -...+-+....+.|||...+ ..|+|.. ..|+ +..--.--|.-.
T Consensus 29 E~Ein~yL~k~~~----~~k~~G~~gl~~a~i~l~~l~~~IGr~~~~~v~l~g~a~v~v~~-~~g~~~a~l~l~~~a~P~ 103 (186)
T PRK10598 29 EQEINQYLAKHNN----FEKQIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDISS-LFGSQKADMKLTLKAQPV 103 (186)
T ss_pred HHHHHHHHHHhcc----HHHhcCCCceeeeEEEeeeceeecCCCCCCEEEEeceeeeeeec-cCCCcCcEEEEEEEEeee
Confidence 6677666653321 222223 34578889999999998865 2344442 2343 222222345555
Q ss_pred ecC-CCcEEEEecc
Q 003666 733 MDE-AGSFHLKNLG 745 (804)
Q Consensus 733 l~~-dg~F~L~NlG 745 (804)
|+. .|.+||+++=
T Consensus 104 Yd~e~gAIYLk~l~ 117 (186)
T PRK10598 104 FDKEKGAIYLKDME 117 (186)
T ss_pred EecCCCcEEEecce
Confidence 665 4888888763
No 21
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=42.71 E-value=26 Score=40.83 Aligned_cols=78 Identities=21% Similarity=0.115 Sum_probs=53.7
Q ss_pred cCeEEeCCCCCC--CCcce---ecCCCC-CCccchhhceeeeecC-CCcEEEEecccCCeEECcEEcCCCCccccCCCCe
Q 003666 697 KPEVLLGRATED--VVVDI---DLGREG-RTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCL 769 (804)
Q Consensus 697 s~eVtIGR~T~~--~~VDI---DLs~EG-paskISRrQA~Ikl~~-dg~F~L~NlGKngI~VNGk~I~~G~~~~L~sgsL 769 (804)
+.+-++||.... ..-++ |...++ --.++|..|-.|.-.. ...+||+...+||.+||-..+..|....|++++.
T Consensus 63 nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~~r~lkN~de 142 (475)
T KOG0615|consen 63 NDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGLSRILKNGDE 142 (475)
T ss_pred cceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhccccccccCCCE
Confidence 345678887333 11122 222221 1335666665444333 3679999999999999999999999999999999
Q ss_pred EEEcC
Q 003666 770 IEIRG 774 (804)
Q Consensus 770 IEIgg 774 (804)
|-|+-
T Consensus 143 i~is~ 147 (475)
T KOG0615|consen 143 ISISI 147 (475)
T ss_pred EEecc
Confidence 99873
No 22
>PRK11507 ribosome-associated protein; Provisional
Probab=40.09 E-value=46 Score=29.89 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=26.2
Q ss_pred CCeEECcEEcCCCCccccCCCCeEEEcCeEEEEE
Q 003666 747 CPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFE 780 (804)
Q Consensus 747 ngI~VNGk~I~~G~~~~L~sgsLIEIggi~fiFl 780 (804)
..|+|||+.-. -....|..|++|+|.|..+...
T Consensus 37 g~V~VNGeve~-rRgkKl~~GD~V~~~g~~~~v~ 69 (70)
T PRK11507 37 GQVKVDGAVET-RKRCKIVAGQTVSFAGHSVQVV 69 (70)
T ss_pred CceEECCEEec-ccCCCCCCCCEEEECCEEEEEe
Confidence 56999998543 4567899999999999887653
No 23
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=37.75 E-value=39 Score=37.88 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred EEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCc-EEEEeccc-CCeEECcEEcCCCCccccCCCCeEEEcC
Q 003666 700 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGS-FHLKNLGK-CPILVNNKEVPPRQSQGLGSSCLIEIRG 774 (804)
Q Consensus 700 VtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~-F~L~NlGK-ngI~VNGk~I~~G~~~~L~sgsLIEIgg 774 (804)
-++||+...+..+||- ...||.||-+-|...++ |+|-.+|. .+.|+-...+.+-..+.|.=|+-.-+|-
T Consensus 40 y~Fgrn~q~~df~idh------~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fga 110 (337)
T KOG1880|consen 40 YLFGRNHQTCDFVIDH------ASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGA 110 (337)
T ss_pred hhhccCCCccceEeec------chhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEec
Confidence 4689998877777776 56899999999998865 99999997 8999999999998888888887777663
No 24
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=30.29 E-value=61 Score=37.39 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=54.3
Q ss_pred EEecceeEEeecCeEEeCCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccC
Q 003666 686 LYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLG 765 (804)
Q Consensus 686 L~Gr~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpaskISRrQA~Ikl~~dg~F~L~NlGKngI~VNGk~I~~G~~~~L~ 765 (804)
|+||...-. .=+.++|-. + .||=|.++ .....+++.+++|-|.-. +.-.+||||.+...++. |.
T Consensus 14 L~GrEl~Lp--~G~~tlG~~--g--cDi~lpL~------~~~~~~L~i~e~gi~l~~--~~~~vwVnG~~~~~~~~--LP 77 (395)
T PRK15367 14 LQGREVWLN--EGNLSLGEK--G--CDICIPLT------INEKIILREQADSLFVDA--GKARVRVNGRRFNPNKP--LP 77 (395)
T ss_pred ccCcEEecC--CCceeecCC--C--ceEEEECC------CCCEEEEEEcCCcEEEec--CCceEEECCEEcCCCCC--CC
Confidence 345544322 234667762 2 44444332 245566777777766533 23469999999998887 77
Q ss_pred CCCeEEEcCeEEEEEeChHhH
Q 003666 766 SSCLIEIRGLAFIFETNQTCV 786 (804)
Q Consensus 766 sgsLIEIggi~fiFllN~~~V 786 (804)
-+.+||++|+-|+|=--.+.+
T Consensus 78 l~q~Ie~aG~~~vlG~~d~~L 98 (395)
T PRK15367 78 SSGVLQVAGVAIAFGKQDCEL 98 (395)
T ss_pred CcchhhhcceEEEecCccccc
Confidence 789999999999994433333
No 25
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=27.30 E-value=34 Score=40.57 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCcCcHHHHHhhCCC-CCcchhh------hcccHHHH---HHHHHHHhhhhhH--
Q 003666 605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDL-DPDDQVS------KYQHEDTR---RAIIRLEQGAHSY-- 672 (804)
Q Consensus 605 ~~~~~~y~ll~DQ~~~~~~s~~d~~psFsD~E~~Ild~dL-~P~Dqvs------r~q~~~~k---r~IrrLEqe~~s~-- 672 (804)
++.+++|+++++|+++|.... |+ ..|+++|+.+..-.+ .+.|+++ ...+.+.+ +.|+.||++..+|
T Consensus 330 ~~l~k~~s~~e~~~v~p~~~s-d~-l~~~~ae~q~~~~~~~~e~DE~Le~diEami~D~dl~p~~qd~r~le~e~~r~~~ 407 (547)
T KOG2293|consen 330 WQLMKQYSCLEDQEVTPQNES-DH-LRRIDAEDQIQGENYNEESDEELESDIEAMILDMDLEPDDQDIRSLEAEKSRSQV 407 (547)
T ss_pred hhhhhhcccccccccccccCC-cc-cccccchhccchhhhcccccccccchHHHHHhhcccCCcchHHHHHHHHHhhhHH
Confidence 378999999999999998877 55 899999999999888 5777732 34555666 8999999999998
Q ss_pred hHHhhcCCcceEEEEecceeEEee-------cCeEEeCCCCCC--CCcceecC
Q 003666 673 MQRAILSHGAFAILYGRHSKHYIK-------KPEVLLGRATED--VVVDIDLG 716 (804)
Q Consensus 673 ~~r~i~~~~AlAvL~Gr~~~YyIr-------s~eVtIGR~T~~--~~VDIDLs 716 (804)
|.+++..-.+ -..+||+ .-.|+=||-+.. .+-.|=|+
T Consensus 408 l~~~iirleq-------s~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EVtlG 453 (547)
T KOG2293|consen 408 LVRSIIRLEQ-------SAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEVTLG 453 (547)
T ss_pred HHHHhhhhhh-------cccchhhhhhhhcceeEEEechhhHhhhcCcceEee
Confidence 6677754221 2467888 888999997776 45667773
No 26
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=26.72 E-value=74 Score=32.43 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=24.9
Q ss_pred cEEEEecccCC---------eEECcEEcCC---------CCccccCCCCeE-EE
Q 003666 738 SFHLKNLGKCP---------ILVNNKEVPP---------RQSQGLGSSCLI-EI 772 (804)
Q Consensus 738 ~F~L~NlGKng---------I~VNGk~I~~---------G~~~~L~sgsLI-EI 772 (804)
.|||||.|+.+ ++|||..+.+ |..++|..|.+. ||
T Consensus 73 t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev 126 (154)
T COG3354 73 TFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGREV 126 (154)
T ss_pred EEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceeeEE
Confidence 49999999976 4788855443 555667777776 44
No 27
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=26.27 E-value=96 Score=28.21 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.4
Q ss_pred CeEECcEEcCCCCccccCCCCeEEEcCeEEEEEe
Q 003666 748 PILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFET 781 (804)
Q Consensus 748 gI~VNGk~I~~G~~~~L~sgsLIEIggi~fiFll 781 (804)
-|+|||+.-.+ ....|.+|++|+|.|..+.-..
T Consensus 38 ~V~vNGe~EtR-RgkKlr~gd~V~i~~~~~~v~~ 70 (73)
T COG2501 38 EVKVNGEVETR-RGKKLRDGDVVEIPGQRYQVVA 70 (73)
T ss_pred eEEECCeeeec-cCCEeecCCEEEECCEEEEEEe
Confidence 68999987654 4578999999999999876543
No 28
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=23.97 E-value=1.3e+02 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEecccCCeEECcEEcCCCCcc
Q 003666 738 SFHLKNLGKCPILVNNKEVPPRQSQ 762 (804)
Q Consensus 738 ~F~L~NlGKngI~VNGk~I~~G~~~ 762 (804)
.|.|+|.|+.++.|....-.+|-..
T Consensus 1 ~F~~~N~g~~~L~I~~v~tsCgCt~ 25 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITDVQTSCGCTT 25 (45)
T ss_pred CEEEEECCCCcEEEEEeeEccCCEE
Confidence 4999999999999998888877643
No 29
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=23.58 E-value=15 Score=37.83 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=33.6
Q ss_pred cccCCeEECcEEcCC-CCccccCC-----------CCeEE---EcCeEEEEE--eChHhHHHHHhhhhccccccc
Q 003666 744 LGKCPILVNNKEVPP-RQSQGLGS-----------SCLIE---IRGLAFIFE--TNQTCVKRYLDSIMKENRTHE 801 (804)
Q Consensus 744 lGKngI~VNGk~I~~-G~~~~L~s-----------gsLIE---Iggi~fiFl--lN~~~V~~~l~~~~k~~q~~~ 801 (804)
.|||-|+|||+.+.. +-...|-. .+.|. ++|..+.+. +|...+++|.++..|+.++|+
T Consensus 28 tGkrvI~VDGkei~r~~wmfklvg~e~F~ig~~~~k~~I~I~~~~g~~YeYsL~VdGksl~ky~e~~~k~~~tW~ 102 (177)
T PF06905_consen 28 TGKRVIKVDGKEIVRRDWMFKLVGKETFTIGGKNTKCEINIEAVSGFAYEYSLEVDGKSLKKYKEEQSKKFNTWE 102 (177)
T ss_dssp T--EEEEETTEEEEEE---S---EEEEEEETTTTEEEEEEEEEETTTEEEEEEEETTEEEEE--SSTTTTEEEEE
T ss_pred cCeEEEEECCcEEEEecceeeeCcccEEEECCCceEEEEEEEecCCceEEEEEEECCEEHHHHHHHHhhhheeEE
Confidence 688999999987654 21222222 23333 345555544 677888999999999999996
No 30
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=21.73 E-value=1e+02 Score=25.52 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=19.4
Q ss_pred CCeEECcEEcCCCCccccCCCCeEEE
Q 003666 747 CPILVNNKEVPPRQSQGLGSSCLIEI 772 (804)
Q Consensus 747 ngI~VNGk~I~~G~~~~L~sgsLIEI 772 (804)
..|+|||+.+. -...+|..|+.|+|
T Consensus 34 G~V~VNg~~~~-~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELEN-RRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEcc-CCCCCCCCCCEEEe
Confidence 35899999875 33568999999987
No 31
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=20.88 E-value=1.4e+02 Score=30.99 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=33.9
Q ss_pred cchhhc----eeeeecCCCcEEEEecccCCeEECcEEcCC--C----CccccCCCCeEEE
Q 003666 723 KISRRQ----AMINMDEAGSFHLKNLGKCPILVNNKEVPP--R----QSQGLGSSCLIEI 772 (804)
Q Consensus 723 kISRrQ----A~Ikl~~dg~F~L~NlGKngI~VNGk~I~~--G----~~~~L~sgsLIEI 772 (804)
...|+| .+|++.. |+.+|+|+++.+|||++-.+.. | ...++..|+-|-|
T Consensus 59 e~~R~~IG~Gv~L~~~~-g~Vw~~~~S~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKv 117 (176)
T cd00050 59 EKTRRHIGKGVQLSYEN-GEVWAYNLSDHPIFVQSPTLDYPLGRPLLTVHKVPPGYSLKV 117 (176)
T ss_pred HHHHHhccCCEEEEEeC-CeEEEEEcCCCCEEEcCCCCCcccCCCCcceEEeCCCCEEEE
Confidence 334555 4566665 9999999999999999877653 1 3356666655554
No 32
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=20.26 E-value=1.4e+02 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=31.3
Q ss_pred eeeeecCCCcEEEEecccCCeEECcEEcCC------CCccccCCCCeEEE
Q 003666 729 AMINMDEAGSFHLKNLGKCPILVNNKEVPP------RQSQGLGSSCLIEI 772 (804)
Q Consensus 729 A~Ikl~~dg~F~L~NlGKngI~VNGk~I~~------G~~~~L~sgsLIEI 772 (804)
.+|++. +|+.+|+|+++.+|||+...+.. ....+|..|+-|-|
T Consensus 64 v~L~~~-~g~Vw~~~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lKv 112 (171)
T smart00524 64 VQLSYE-NGDVWLYNRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIKV 112 (171)
T ss_pred eEEEEe-CCeEEEEEcCCCCeEEcCCCcccccCCCCcceEEECCCCeEEE
Confidence 456665 49999999999999999877653 23456666666443
Done!