Query 003666
Match_columns 804
No_of_seqs 156 out of 222
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 18:54:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003666.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1713-1717//hhsearch_pdb/003666hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g3g_A Protien kinase SPK1; FH 1.0 1 1 97.5 9.7 85 698-788 64-154 (164)
2 1g6g_A Protein kinase RAD53; b 1.0 1 1 96.2 11.6 81 699-785 37-123 (127)
3 1gxc_A CHK2, CDS1, serine/thre 1.0 1 1 95.2 10.4 98 681-781 28-140 (149)
4 2csw_A Ubiquitin ligase protei 1.0 1 1 93.4 6.2 94 692-788 29-131 (145)
5 3va4_A Mediator of DNA damage 1.0 1 1 93.2 9.2 96 680-782 24-126 (132)
6 2jpe_A Nuclear inhibitor of pr 1.0 1 1 93.1 4.7 94 683-782 37-135 (140)
7 2pie_A E3 ubiquitin-protein li 1.0 1 1 92.7 10.0 97 691-790 20-125 (138)
8 2kfu_A RV1827 PThr 22; FHA dom 1.0 1 1 92.2 9.4 92 681-783 56-150 (162)
9 1lgp_A Cell cycle checkpoint p 1.0 1 1 92.2 8.5 95 681-781 2-110 (116)
10 2ff4_A Probable regulatory pro 1.0 1 1 91.9 11.9 95 680-784 286-383 (388)
No 1
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=1.00 E-value=1 Score=97.51 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred CEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECCCCCEEECCEECCCCCCCCCCCCCEEEECCE--
Q ss_conf 808967999999831004898997500021002225489959999523497497867719999413699993788690--
Q 003666 698 PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGL-- 775 (804)
Q Consensus 698 ~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlGKn~I~VNGk~I~~G~~~~L~sgsLIEIggi-- 775 (804)
..++|||... .||-| ...+.|||+||.|.++.++.|+|+.+.+||+||||+++..+..+.|.+|++|.||..
T Consensus 64 ~~~~IGR~~~---~di~l---~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~ 137 (164)
T 1g3g_A 64 KVWTFGRNPA---CDYHL---GNISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVE 137 (164)
T ss_dssp EEEEEESSSS---SSEEC---CCCTTTTSSCEEEEECSTTCEEEEECCSSCEEETTEEECTTEEEECCTTCEEEESCSST
T ss_pred CCEEECCCCC---CCEEE---CCCCCCCHHHEEEEECCCCCEEEEECCCCCEEECCEECCCCCCEECCCCCEEEECCCCC
T ss_conf 7389789999---99895---89678583377999888998999988989828999995899746918999999899888
Q ss_pred ----EEEEEECHHHHHH
Q ss_conf ----8999929476999
Q 003666 776 ----AFIFETNQTCVKR 788 (804)
Q Consensus 776 ----~fiFllN~~lV~~ 788 (804)
+|+|.+|......
T Consensus 138 ~~~~~f~~~~~~~~~~~ 154 (164)
T 1g3g_A 138 SDILSLVIFINDKFKQC 154 (164)
T ss_dssp TSCEEEEEEECHHHHHH
T ss_pred CCCEEEEEEECCHHHHH
T ss_conf 77489999958522357
No 2
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=96.21 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=71.3
Q ss_pred EEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECCCCCEEECCEECCCCCCCCCCCCCEEEECCE---
Q ss_conf 08967999999831004898997500021002225489959999523497497867719999413699993788690---
Q 003666 699 EVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGL--- 775 (804)
Q Consensus 699 eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlGKn~I~VNGk~I~~G~~~~L~sgsLIEIggi--- 775 (804)
.++|||... .||-|. ..+.|||+||.|.++.++.|+|+.+++||+||||+++..++.+.|.+|++|.||..
T Consensus 37 ~~~IGR~~~---~di~l~---~~~~vSr~Ha~i~~~~~g~~~l~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~ 110 (127)
T 1g6g_A 37 VWTFGRNPA---CDYHLG---NISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVES 110 (127)
T ss_dssp EEEEESSTT---SSEECC---SCTTSCSSCEEEEECTTSCEEEEECCSSCCEETTEECCTTCCEECCTTCEEEECTTSGG
T ss_pred CEEECCCCC---CCEEEC---CCCCCCHHHEEEEECCCCCEEEEECCCCCEEECCEECCCCCEEECCCCCEEEECCCCCC
T ss_conf 789799999---899968---97789844859998889929999898598299999948997488599999998987667
Q ss_pred ---EEEEEECHHH
Q ss_conf ---8999929476
Q 003666 776 ---AFIFETNQTC 785 (804)
Q Consensus 776 ---~fiFllN~~l 785 (804)
+|+|.+|...
T Consensus 111 ~~i~f~~~~~~~~ 123 (127)
T 1g6g_A 111 DILSLVIFINDKF 123 (127)
T ss_dssp GCEEEEEEECHHH
T ss_pred CEEEEEEEECCHH
T ss_conf 5499999948264
No 3
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=95.22 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCEEEEE---ECCEEEEEECCEEEECCCCCCCCCCEECCC-----CCCCCCCHHHCEEEEECCCC----CEEEEECCCCC
Q ss_conf 6139998---443169843380896799999983100489-----89975000210022254899----59999523497
Q 003666 681 GAFAILY---GRHSKHYIKKPEVLLGRATEDVVVDIDLGR-----EGRTNKISRRQAMINMDEAG----SFHLKNLGKCP 748 (804)
Q Consensus 681 ~AlAvL~---Gr~~~YyIrs~eVtIGR~T~~~~VDIDLs~-----EGpa~kISRrQA~Ikl~~dg----~F~L~NlGKn~ 748 (804)
..+|.|. +..-.|.+....++|||.. ..||-|.- ......|||+||.|.+..++ .|+|+.+.+||
T Consensus 28 ~~w~~L~~~~~~~~~i~L~~~~~~IGR~~---~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG 104 (149)
T 1gxc_A 28 APWARLWALQDGFANLECVNDNYWFGRDK---SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG 104 (149)
T ss_dssp -CCEEEEECSTTCCCEEECSSEEEEESST---TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC
T ss_pred CEEEEEEECCCCCCEEEECCCCEEECCCC---CCCEEECCCCCCCCCCCCCCCHHHEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 74699998279976699779888956899---889897885334545578595015499998997860579999999898
Q ss_pred EEECCEECCCCCCCCCCCCCEEEECC---EEEEEEE
Q ss_conf 49786771999941369999378869---0899992
Q 003666 749 ILVNNKEVPPRQSQGLGSSCLIEIRG---LAFIFET 781 (804)
Q Consensus 749 I~VNGk~I~~G~~~~L~sgsLIEIgg---i~fiFll 781 (804)
+||||++|.++..+.|.+|++|.||. ..|+|+-
T Consensus 105 T~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d 140 (149)
T 1gxc_A 105 TFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFD 140 (149)
T ss_dssp EEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEE
T ss_pred EEECCEECCCCCEEECCCCCEEEECCCCCEEEEEEE
T ss_conf 699999978998388889999998788774999997
No 4
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=93.37 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=73.4
Q ss_pred EEEE-ECCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEECCCCCCCCCCCCCE
Q ss_conf 6984-33808967999999831004898997500021002225489959999523-497497867719999413699993
Q 003666 692 KHYI-KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSCL 769 (804)
Q Consensus 692 ~YyI-rs~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-Kn~I~VNGk~I~~G~~~~L~sgsL 769 (804)
+|.+ ....++|||.. ..||-|.-......|||+||.|.+..++.|+|+.+| +|++||||+++.+++.+.|.++++
T Consensus 29 ~~~l~~~~~~~IGR~~---~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~~~~~~L~~GD~ 105 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDY 105 (145)
T ss_dssp BEECCTTCCEEEESST---TSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEECCSSCC
T ss_pred EEEECCCCCEEECCCC---CCCEEECCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCCEECCCCCE
T ss_conf 6994799818977999---9998978987678797568599994799199998989987589999978996278899999
Q ss_pred EEECC-------EEEEEEECHHHHHH
Q ss_conf 78869-------08999929476999
Q 003666 770 IEIRG-------LAFIFETNQTCVKR 788 (804)
Q Consensus 770 IEIgg-------i~fiFllN~~lV~~ 788 (804)
|.||. +.|.|.+..+....
T Consensus 106 I~iG~~~~~g~~~~f~~~~~~~~~~~ 131 (145)
T 2csw_A 106 IQLGVPLENKENAEYEYEVTEEDWET 131 (145)
T ss_dssp EEESCCCTTCSSCSCCCCEEEEEHHH
T ss_pred EEECCCCCCCCEEEEEEEECCCCHHH
T ss_conf 99898888883089999964645311
No 5
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=1.00 E-value=1 Score=93.20 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=79.9
Q ss_pred CCCEEEEEECC---EEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC-CCCEEEEECC-CCCEEECCE
Q ss_conf 86139998443---169843380896799999983100489899750002100222548-9959999523-497497867
Q 003666 680 HGAFAILYGRH---SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLG-KCPILVNNK 754 (804)
Q Consensus 680 ~~AlAvL~Gr~---~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-dg~F~L~NlG-Kn~I~VNGk 754 (804)
.+.|-++.|.. .+|.+...+++|||... .||-| +...|||+||.|.+.. ++.|+|+.+| +||+||||+
T Consensus 24 ~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~ 96 (132)
T 3va4_A 24 IGQLRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVAL----PFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKP 96 (132)
T ss_dssp SEEEEECCBTTBSCEEEEECSEEEEEESSTT---SSEEC----CCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTT
T ss_pred CEEEEEEECCCCCCEEEEECCCCEEECCCCC---CCEEE----CCCCCCHHHEEEEEECCCCEEEEEECCCCCCEEECCE
T ss_conf 6899999699988669998999989745889---98896----8988675488999986899899998999898699999
Q ss_pred E--CCCCCCCCCCCCCEEEECCEEEEEEEC
Q ss_conf 7--199994136999937886908999929
Q 003666 755 E--VPPRQSQGLGSSCLIEIRGLAFIFETN 782 (804)
Q Consensus 755 ~--I~~G~~~~L~sgsLIEIggi~fiFllN 782 (804)
+ +.++..+.|.+|++|.||+..|.|..-
T Consensus 97 ~i~l~~~~~~~L~~GD~I~lG~~~l~f~~~ 126 (132)
T 3va4_A 97 PRVLPPGVSHRLRDQELILFADFPCQYHRL 126 (132)
T ss_dssp TEEECTTCCEECCTTCEEEETTEEEEEEEC
T ss_pred ECCCCCCCEEECCCCCEEEECCEEEEEEEC
T ss_conf 941689987898999999999999999989
No 6
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=93.10 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=75.1
Q ss_pred EEEEEECC--EEEEEECC-EEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC-CCCEEEEECC-CCCEEECCEECC
Q ss_conf 39998443--16984338-0896799999983100489899750002100222548-9959999523-497497867719
Q 003666 683 FAILYGRH--SKHYIKKP-EVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLG-KCPILVNNKEVP 757 (804)
Q Consensus 683 lAvL~Gr~--~~YyIrs~-eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-dg~F~L~NlG-Kn~I~VNGk~I~ 757 (804)
|-++.|.. -+|.+... .++|||.... .||-|. ...|||+||.|.++. ++.|+|+.+| +||+||||+++.
T Consensus 37 L~v~~g~~~g~~~~l~~~~~~~IGR~~~~--~di~l~----d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~ 110 (140)
T 2jpe_A 37 LDVVKGDKLIEKLIIDEKKYYLFGRNPDL--CDFTID----HQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLE 110 (140)
T ss_dssp EEEESSSSEEEEECCSSCSBCCBSSCTTT--SSSCCC----CSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEEC
T ss_pred EEEECCCCCCEEEEECCCCEEEECCCCCC--CCEEEC----CCCCCHHHEEEEEECCCCCEEEEECCCCCCEEECCEECC
T ss_conf 99983997513899689983996689766--898938----989682353999988889599998989998389999977
Q ss_pred CCCCCCCCCCCEEEECCEEEEEEEC
Q ss_conf 9994136999937886908999929
Q 003666 758 PRQSQGLGSSCLIEIRGLAFIFETN 782 (804)
Q Consensus 758 ~G~~~~L~sgsLIEIggi~fiFllN 782 (804)
++..+.|.+|++|.||...+.|.+.
T Consensus 111 ~~~~~~L~~gd~i~~G~~~~~f~~~ 135 (140)
T 2jpe_A 111 PHKPQQIPIDSTVSFGASTRAYTLR 135 (140)
T ss_dssp SSSCCEECTTCCBBCSSCCCCBCCB
T ss_pred CCCCEECCCCCEEEECCCEEEEEEE
T ss_conf 9953797899999989964899995
No 7
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=92.70 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=77.3
Q ss_pred EEEEEE-CCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEECCCCCCCCCCCCC
Q ss_conf 169843-3808967999999831004898997500021002225489959999523-49749786771999941369999
Q 003666 691 SKHYIK-KPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSC 768 (804)
Q Consensus 691 ~~YyIr-s~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-Kn~I~VNGk~I~~G~~~~L~sgs 768 (804)
-+|.+. ...++|||.. ..||-|.-......|||+||.|.+..++.|+|+.+| +||+||||+++..+..+.|.+|+
T Consensus 20 ~~~~l~~~~~~~IGR~~---~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~GD 96 (138)
T 2pie_A 20 GWLLLEDGCEVTVGRGF---GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGD 96 (138)
T ss_dssp CBEEECTTCCEEEESSS---SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTC
T ss_pred CEEEECCCCEEEECCCC---CCCEEECCCCCCCCCCHHHEEEEECCCCCEEEEECCCCCCEEECCEECCCCCCEECCCCC
T ss_conf 88996699818989999---999895798767779866939998579839999897998769999995899847879999
Q ss_pred EEEECC-------EEEEEEECHHHHHHHH
Q ss_conf 378869-------0899992947699999
Q 003666 769 LIEIRG-------LAFIFETNQTCVKRYL 790 (804)
Q Consensus 769 LIEIgg-------i~fiFllN~~lV~~~l 790 (804)
+|.||. +.|.|....+.....-
T Consensus 97 ~I~lG~~~~~~~~~~f~~~~~~~~~~~~~ 125 (138)
T 2pie_A 97 YIQLGVPLENKENAEYEYEVTEEDWETIY 125 (138)
T ss_dssp EEEESCCCTTCSSCSEEEEEEEEEHHHHG
T ss_pred EEEECCCCCCCCEEEEEEEECCHHHHHHC
T ss_conf 99987888899408999996310443417
No 8
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=1.00 E-value=1 Score=92.23 Aligned_cols=92 Identities=23% Similarity=0.338 Sum_probs=76.9
Q ss_pred CCEEEEEEC--CEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEECC
Q ss_conf 613999844--31698433808967999999831004898997500021002225489959999523-497497867719
Q 003666 681 GAFAILYGR--HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVP 757 (804)
Q Consensus 681 ~AlAvL~Gr--~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-Kn~I~VNGk~I~ 757 (804)
..|-++.|. -.+|.+....++|||... .||-|. ...|||+||.|.+. ++.|+|+.+| +|++||||+++.
T Consensus 56 ~~L~v~~G~~~g~~~~L~~~~~~IGR~~~---~di~l~----d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VNg~~i~ 127 (162)
T 2kfu_A 56 ALLVVKRGPNAGSRFLLDQAITSAGRHPD---SDIFLD----DVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVNREPVD 127 (162)
T ss_dssp CEEEEEESTTCSCEEETTSSEEEEESCSS---SSEEST----TTSSSSCSEEEEEE-TTEEEEECCCCSSCEEETTBCCS
T ss_pred EEEEEEECCCCCEEEEECCCCEEECCCCC---CCEEEC----CCCCCHHHEEEEEE-CCEEEEEECCCCCCEEECCEECC
T ss_conf 79999838999729997898889778888---888979----99828433899998-99999998998787589999864
Q ss_pred CCCCCCCCCCCEEEECCEEEEEEECH
Q ss_conf 99941369999378869089999294
Q 003666 758 PRQSQGLGSSCLIEIRGLAFIFETNQ 783 (804)
Q Consensus 758 ~G~~~~L~sgsLIEIggi~fiFllN~ 783 (804)
.+.|.+|++|.||..+|.|....
T Consensus 128 ---~~~L~~GD~I~iG~~~l~f~~~~ 150 (162)
T 2kfu_A 128 ---SAVLANGDEVQIGKFRLVFLTGP 150 (162)
T ss_dssp ---EEECCSSCEEEETTEEEEEECSC
T ss_pred ---EEECCCCCEEEECCEEEEEEECC
T ss_conf ---59999999999999999998587
No 9
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=1.00 E-value=1 Score=92.21 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=77.0
Q ss_pred CCEEEEEEC-----CEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECC-CCCEEEEECCCCCEEECCE
Q ss_conf 613999844-----3169843380896799999983100489899750002100222548-9959999523497497867
Q 003666 681 GAFAILYGR-----HSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNK 754 (804)
Q Consensus 681 ~AlAvL~Gr-----~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~-dg~F~L~NlGKn~I~VNGk 754 (804)
.++|.|... ...|.+....++|||... .||-| .....|||+||.|.++. ++.|+|+..++||+||||+
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~---~di~l---~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~ 75 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRG---CDLSF---PSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKL 75 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTT---SSEEC---TTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCC
T ss_pred CCEEEEEEECCCCCCCEEEECCCCEEECCCCC---CCEEE---CCCCCCCHHHEEEEEECCCCEEEEEECCCCCCEECCE
T ss_conf 87799999479887668998998889789978---88894---7999978427399998889819999899298579999
Q ss_pred ECCCCCCCCCCCCCEEEECC--------EEEEEEE
Q ss_conf 71999941369999378869--------0899992
Q 003666 755 EVPPRQSQGLGSSCLIEIRG--------LAFIFET 781 (804)
Q Consensus 755 ~I~~G~~~~L~sgsLIEIgg--------i~fiFll 781 (804)
++..+..+.|.+|++|.||. +.|+|..
T Consensus 76 ~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~ 110 (116)
T 1lgp_A 76 KVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYES 110 (116)
T ss_dssp CCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCC
T ss_pred ECCCCCCEECCCCCEEEEECCCCCCCCEEEEEEEC
T ss_conf 95799718988999999945688888509999971
No 10
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=1.00 E-value=1 Score=91.85 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCCEEEEEE--CCEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCHHHCEEEEECCCCCEEEEECC-CCCEEECCEEC
Q ss_conf 861399984--431698433808967999999831004898997500021002225489959999523-49749786771
Q 003666 680 HGAFAILYG--RHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEV 756 (804)
Q Consensus 680 ~~AlAvL~G--r~~~YyIrs~eVtIGR~T~~~~VDIDLs~EGpa~kISRrQA~Ikl~~dg~F~L~NlG-Kn~I~VNGk~I 756 (804)
.+..+.|.. .-.+|.+.+..++|||... .||-| +...|||+||.|.+. ++.|+|+.+| +||+||||+++
T Consensus 286 ~~~~~~l~~~~~g~~~~l~~~~~~iGR~~~---~di~l----~~~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vng~~i 357 (388)
T 2ff4_A 286 QQAVAYLHDIASGRGYPLQAAATRIGRLHD---NDIVL----DSANVSRHHAVIVDT-GTNYVINDLRSSNGVHVQHERI 357 (388)
T ss_dssp SBCCCEEEETTTCCEEECCSSEEEEESSTT---SSEEC----CCTTSCTTCEEEEEC-SSCEEEEECSCSSCCEETTEEC
T ss_pred CCCEEEEEECCCCCEEEECCCCEEEECCCC---CEEEE----CCCCCCHHHEEEEEE-CCEEEEEECCCCCCEEECCEEC
T ss_conf 887389998799958998998879850898---85997----887649647499998-9989999897989758999997
Q ss_pred CCCCCCCCCCCCEEEECCEEEEEEECHH
Q ss_conf 9999413699993788690899992947
Q 003666 757 PPRQSQGLGSSCLIEIRGLAFIFETNQT 784 (804)
Q Consensus 757 ~~G~~~~L~sgsLIEIggi~fiFllN~~ 784 (804)
. ..+.|.+|++|.||...|.|..+..
T Consensus 358 ~--~~~~L~~gd~i~~G~~~~~~~~~~~ 383 (388)
T 2ff4_A 358 R--SAVTLNDGDHIRICDHEFTFQISAG 383 (388)
T ss_dssp S--SEEEECTTCEEEETTEEEEEECSCC
T ss_pred C--CCEECCCCCEEEECCEEEEEEECCC
T ss_conf 8--9458799999999998999995798
Done!