BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003668
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF 289
G P+ + P F+E+ I +IE G+ EGI R + ++ R+F+Q
Sbjct: 54 FGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLD 113
Query: 290 SPEEDAHI--IADCVKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILETFP 346
E+D + +A +K ELP VP + L+EA + DR ++ A++ +L+ FP
Sbjct: 114 LAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALK-EVLKKFP 172
Query: 347 EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
+ N ++ + ++ + V+ + N M++ ++ C P L+RP
Sbjct: 173 KENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 214
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 244 TPSFLEKAIRFIEEHGVQVEGILRQA---AYVDDVHRRIREFEQGKTEFSPEEDAHIIAD 300
P F+++ I +E+ G+ V+GI R + A + + + + E+ + S ED H++
Sbjct: 35 VPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG 94
Query: 301 CVKYVIRELPSSPVPASCCNALLEA-RRTDRGSRVSAMRTAILETFPEPNRKLLQRILMM 359
+K RELP P S +EA ++ D +R+ A+++ +++ P PNR ++ +
Sbjct: 95 ALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGH 153
Query: 360 MQTVASSKNQNRMSTSAVAACMAPLLLR 387
+ + + ++N MST ++ P LLR
Sbjct: 154 LTKIVAKASKNLMSTQSLGIVFGPTLLR 181
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFSPEEDAHIIADCV 302
P F+EK + FIE+ G+ EG+ R + D ++F+Q S E + +A +
Sbjct: 38 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 97
Query: 303 KYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
K +LP +P S LLEA + D+ R+ A++ I++ F N + + ++ +
Sbjct: 98 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVKKFHPVNYDVFRYVITHLN 156
Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRP 388
V+ N M+ ++ C P L+RP
Sbjct: 157 RVSQQHKINLMTADNLSICFWPTLMRP 183
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFSPEEDAHIIADCV 302
P F+EK + FIE+ G+ EG+ R + D ++F+Q S E + +A +
Sbjct: 28 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87
Query: 303 KYVIRELPSSPVPASCCNALLEARRT-DRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
K +LP +P S LLEA + D+ R+ A++ I++ F N + + ++ +
Sbjct: 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVKKFHPVNYDVFRYVITHLN 146
Query: 362 TVASSKNQNRMSTSAVAACMAPLLLRP 388
V+ N M+ ++ C P L+RP
Sbjct: 147 RVSQQHKINLMTADNLSICFWPTLMRP 173
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 229 VIGRPILLALEDV-DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT 287
V G P+ + ++ P +++A+R++ H + G+ R++ V + +R+ +G
Sbjct: 20 VFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSG-VKSRIQALRQMNEGAI 78
Query: 288 EFSPEE--DAHIIADCVKYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILET 344
+ E A+ +AD +K R+LP + L+ + + R+ A++ AI+
Sbjct: 79 DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-L 137
Query: 345 FPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386
P+ NR++LQ +L + V ++ +N+M+ + +A C+AP L
Sbjct: 138 LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLF 179
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
P L + + +++ H + EGI R++A V +++ G +F + H+ A +K
Sbjct: 28 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 87
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
+RELP + ++ D RV A +L+T PE N ++L+ + + +
Sbjct: 88 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 146
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
++ +QN+M+ + +A P LL
Sbjct: 147 SAHSDQNKMTNTNLAVVFGPNLL 169
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
P L + + +++ H + EGI R++A V +++ G +F + H+ A +K
Sbjct: 24 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 83
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
+RELP + ++ D RV A +L+T PE N ++L+ + + +
Sbjct: 84 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 142
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
++ +QN+M+ + +A P LL
Sbjct: 143 SAHSDQNKMTNTNLAVVFGPNLL 165
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
P L + + +++ H + EGI R++A V +++ G +F + H+ A +K
Sbjct: 63 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 122
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
+RELP + ++ D RV A +L+T PE N ++L+ + + +
Sbjct: 123 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 181
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
++ +QN+M+ + +A P LL
Sbjct: 182 SAHSDQNKMTNTNLAVVFGPNLL 204
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
P L + + +++ H + EGI R++A V +++ G +F H+ A +K
Sbjct: 27 PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILK 86
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
+RELP + ++ D RV A +L+T PE N ++L+ + + +
Sbjct: 87 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 145
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
++ +QN+M+ + +A P LL
Sbjct: 146 SAHSDQNKMTNTNLAVVFGPNLL 168
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSPEEDAHIIADCVK 303
P L + + +++ H + EGI ++A V +++ G +F + H+ A +K
Sbjct: 55 PIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 114
Query: 304 YVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363
+RELP + ++ D RV A +L+T PE N ++L+ + + +
Sbjct: 115 TFLRELPEPLLTFDLYPHVVGFLNIDESQRVPAT-LQVLQTLPEENYQVLRFLTAFLVQI 173
Query: 364 ASSKNQNRMSTSAVAACMAPLLL 386
++ +QN+M+ + +A P LL
Sbjct: 174 SAHSDQNKMTNTNLAVVFGPNLL 196
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 246 SFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRI------REFEQGKTEFSPEEDAHIIA 299
S ++K I +E G+ +G+ R V + + + + +TE E + I
Sbjct: 39 SIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT 98
Query: 300 DCVKYVIRELPSSPVPASCCNALLEARRTD-RGSRVSAMRTAILETFPEPNRKLLQRILM 358
+K +R LP + + ++A + + + SRVS + +++ PE NR++L ++
Sbjct: 99 SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIH-SLVHRLPEKNRQMLHLLMN 157
Query: 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRP 388
+ VA + QN M+ + + P LLRP
Sbjct: 158 HLAKVADNHKQNLMTVANLGVVFGPTLLRP 187
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 7/178 (3%)
Query: 228 PVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ 284
P+ G+ ++L ++ D P + + F+ + G +GI RQ+A V +
Sbjct: 7 PMPGQLFGISLPNICENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNS 66
Query: 285 GKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTA--IL 342
G E +IA +K +R +P S + + + D+G+ + T +L
Sbjct: 67 GVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSV--MDQGNDEEKINTVQRLL 124
Query: 343 ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDF 400
+ P N LL+ + ++ + + N+M+ +A C+AP +L P + E+E +F
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF 182
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 237 ALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS--PEED 294
A+ + PSFL A +E+H + EG+ R++ V + + + G+ S P D
Sbjct: 76 AVPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD 134
Query: 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARR--TDRGSRVSAMRTAILETFPEPNRKL 352
IA +K RELP +PA ALL+A++ T+ ++ + + + +L + +
Sbjct: 135 ---IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLA---DHTVHV 188
Query: 353 LQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
L+ ++ V+ ++N+M +S +A AP LL+
Sbjct: 189 LRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 223
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 29/160 (18%)
Query: 244 TPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-------EDAH 296
P L+ FIE +G+ V+GI R + ++ R EF+ +E P+ +D H
Sbjct: 37 VPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFD---SEHVPDLTKEPYVQDIH 92
Query: 297 IIADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTA---------ILETFPE 347
+ K RELP N LL + ++ S + T +++ P
Sbjct: 93 SVGSLCKLYFRELP---------NPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPP 143
Query: 348 PNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
P+ + L+ ++ + +A + M +A AP LLR
Sbjct: 144 PHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLR 183
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAHIIADCV 302
PS + + IE+ G+ G+ R + V +F + KT S +D H I +
Sbjct: 18 PSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLL 77
Query: 303 KYVIRELPSSPVPASCCNALLEARR-TDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQ 361
K +R L + A +EA TD + ++AM A+ E P+ NR L +++ +Q
Sbjct: 78 KDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLMIHLQ 136
Query: 362 TVASSKNQNRMSTSAVAACMAPLLL 386
VA S + +M + +A P ++
Sbjct: 137 RVAQSPH-TKMDVANLAKVFGPTIV 160
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN--SGSVVVKADKKLLTVL 158
+WKKRWF+L + L++F +D + EV ID N +G ++ AD
Sbjct: 78 NWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMAD------- 130
Query: 159 FPDGRDGRAFTLKAESLEDLYDWKTAL 185
R F L AES ED W + L
Sbjct: 131 -------RTFHLIAESPEDASQWFSVL 150
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ 126
G+ F S F+ G SWK+RW +L + ++FRS A+ Q
Sbjct: 19 GSPYFHS---FLYMNGGLMNSWKRRWCVLKDETFLWFRSKQEALKQ 61
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
+AV K+G + +G +WK+R+F L ++ +F+S+ P L I L
Sbjct: 12 SAVIKAG--YCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEP---------LRVIPLK 60
Query: 142 NSGSV--VVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190
V ++D + LF R F ++A+S E+++ W A+ A+
Sbjct: 61 EVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIV 111
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 24/108 (22%)
Query: 102 WKKRWFILTHTSLVFFRSDPS--AIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159
WKK WF L + + D + +I K V++ + I+ ++ + +
Sbjct: 24 WKKNWFDLWSDGHLIYYDDQTRQSIEDK---VHMPVDCIN--------IRTGHECRDIQP 72
Query: 160 PDG-----------RDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
PDG RDG+ +L AES +D WK L+++ PS+G
Sbjct: 73 PDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTSGPSSG 120
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 98 GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157
G WK+RWF+L+ L +++ D GS + L ++ G + + T
Sbjct: 24 GLRLWKRRWFVLSGHCLFYYK-DSREESVLGS---VLLPSYNIRPDGPGAPRGRRFTFTA 79
Query: 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENA 188
P R + L A++LEDL W AL A
Sbjct: 80 EHP---GMRTYVLAADTLEDLRGWLRALGRA 107
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
V + G L I++ GI K+ WF+LT +L +++ D +K E L++ + L +
Sbjct: 517 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKEYMLSVDNLKLRDV 572
Query: 144 GSVVVKADKKLLTVLFPDGR----DGRAFTLKAESLEDLYDWKTALENALAQAPSTG--- 196
+ + K + + + R D R L E+ E++ WK + A G
Sbjct: 573 EKGFM-SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKE 631
Query: 197 --SATGQNG 203
S T +NG
Sbjct: 632 KASETEENG 640
>pdb|2P0D|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,4,5)p3
pdb|2P0F|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,5)p3
pdb|2P0H|A Chain A, Arhgap9 Ph Domain In Complex With Ins(1,3,4)p3
Length = 129
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 76 RITRAGNAVFKSGPLFISSKGIGW----TSWKKRWFILTHTSLVFFRSDPSAIPQKG--- 128
R + + V KSG L ++ G +W W +LT SLVF+R P P G
Sbjct: 4 RASVGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGP 63
Query: 129 ----SEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTA 184
E ++ L G L + + + + VL G F L+++ +L W A
Sbjct: 64 AGSRPESSVDLRGAALAHGRHLSSRRN-----VLHIRTIPGHEFLLQSDHETELRAWHRA 118
Query: 185 LENALAQ 191
L + +
Sbjct: 119 LRTVIER 125
>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 201 QNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPIL---LALEDVDGTPSF-LEKAIRFIE 256
++G + + E G+V++L++KP +F I RP L L + D DG + + R +
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEIARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 257 EHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSP 291
GV E + RQAA D + + G+TE P
Sbjct: 126 AFGVP-EDLARQAAAALDTD---GDGKVGETEIVP 156
>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 201 QNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPIL---LALEDVDGTPSF-LEKAIRFIE 256
++G + + E G+V++L++KP +F + RP L L + D DG + + R +
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 257 EHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSP 291
GV E + RQAA D + + G+TE P
Sbjct: 126 AFGVP-EDLARQAAAALDTD---GDGKVGETEIVP 156
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
V + G L I++ GI K+ WF+LT +L +++ D +K + L++ + L +
Sbjct: 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKKYMLSVDNLKLRDV 595
Query: 144 GSVVVKADKKLLTVLFPDGR----DGRAFTLKAESLEDLYDWKTALENALAQAPSTG--- 196
+ + K + + + R D R L E+ E++ WK + A G
Sbjct: 596 EKGFM-SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKE 654
Query: 197 --SATGQNG 203
S T +NG
Sbjct: 655 KASETEENG 663
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVH-RRIREFEQGKTEFSPEEDAHIIAD 300
D P L K + IE+ G++ + R + + R++ + + + D H++AD
Sbjct: 23 DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELRQLLDCDTPSVDLE-MIDVHVLAD 81
Query: 301 CVKYVIRELPSSPVPASCCNALLEARRTDRGSR--VSAMRTAILE-TFPEPNRKLLQRIL 357
K + +LP+ +PA+ + ++ + S + ++ I + P LQ +L
Sbjct: 82 AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLL 141
Query: 358 MMMQTVASSKNQNRMSTSAVAACMAPLLLR 387
++ + ++N ++ ++ +P+L R
Sbjct: 142 KHFFKLSQTSSKNLLNARVLSEIFSPMLFR 171
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSA---IPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157
SW+ + +L SL F++ +A +P G EV ++L GSV K+
Sbjct: 31 SWQNVYCVLRRGSLGFYKDAKAASAGVPYHG-EVPVSLA----RAQGSVAFDYRKR--KH 83
Query: 158 LFPDG-RDGRAFTLKAESLEDLYDWKTALENALAQAPSTG 196
+F G +DG+ + +A+ ++ W + A+A PS+G
Sbjct: 84 VFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSSG 123
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 101 SWKKRWFILTHTSLVFF 117
+WK+RWFILT L +F
Sbjct: 228 TWKRRWFILTDNCLYYF 244
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 101 SWKKRWFILTHTSLVFF 117
+WK+RWFILT L +F
Sbjct: 228 TWKRRWFILTDNCLYYF 244
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 101 SWKKRWFILTHTSLVFF 117
+WK+RWFILT L +F
Sbjct: 27 TWKRRWFILTDNCLYYF 43
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 75 HRITRAGNA-VFKSGPLFI-SSKGIGWTSWKKRWFILTHTSLVFFRSD 120
H + R NA V K+G LF +S G+ W KRWF+L L +++ +
Sbjct: 12 HSMKRNPNAPVTKAGWLFKQASSGV--KQWNKRWFVLVDRCLFYYKDE 57
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 77 ITRAGNA-VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSD 120
I R NA V + G L+ G WKKRWF+L+ L ++R +
Sbjct: 13 IKRNPNAPVVRRGWLY-KQDSTGMKLWKKRWFVLSDLCLFYYRDE 56
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQ 126
+WK+RWFILT L +F P+
Sbjct: 31 TWKRRWFILTDNCLYYFEYTTDKEPR 56
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQ 126
+WK+RWFILT L +F P+
Sbjct: 20 TWKRRWFILTDNCLYYFEYTTDKEPR 45
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQ 126
+WK+RWFILT L +F P+
Sbjct: 18 TWKRRWFILTDNCLYYFEYTTDKEPR 43
>pdb|2PM7|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 399
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 218 EQLKEKPVKFPVIGRPILLALEDV-------------DGTPSFLEKAIRFIEEHGVQVEG 264
E LK K K P+I + ++ ++DV DGT FL++A+ F +
Sbjct: 56 EALKTKDFK-PLINQRLVKVIDDVNEEDWNXLEKLSXDGTEEFLKEALAFDND------- 107
Query: 265 ILRQAAYVDDVHRRIRE-----FEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319
++ DD + + F+Q +T F PE D + + + + + L S + ++
Sbjct: 108 ---ESDAQDDANNEKEDDGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGNIKSAVK 164
Query: 320 NAL 322
N+L
Sbjct: 165 NSL 167
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 87 SGPLFISSKGIGW--------TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI 138
SGP+ +GW +W++R+F+L L +++ + PQ + L G
Sbjct: 6 SGPI-----KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGC----MYLPGC 56
Query: 139 DLNNSGSVVVKADKKLLTVL---FPDGRDGR-AFTLKAESLEDLYDWKTALENALAQAPS 194
+ + +A K + ++ + R G+ ++ L A S ++ +W L PS
Sbjct: 57 TIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116
Query: 195 TG 196
+G
Sbjct: 117 SG 118
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 101 SWKKRWFILTHTSLVFFRSDPSAIPQ 126
+WK+RWFILT L +F P+
Sbjct: 18 TWKRRWFILTDNCLYYFEYTTDKEPR 43
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 41/66 (62%), Gaps = 10/66 (15%)
Query: 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQ---LQK 705
++Q+L+D++++LQR+ +E ++ +LE++ K L E+R E++ A + Q L++
Sbjct: 349 KVQKLKDSEAELQRR-------HEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401
Query: 706 ERDKRT 711
+ RT
Sbjct: 402 QNSSRT 407
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 218 EQLKEKPVKFPVIGRPILLALEDV-------------DGTPSFLEKAIRFIEEHGVQVEG 264
E LK K K P+I + ++ ++DV DGT FL++A+ F +
Sbjct: 56 EALKTKDFK-PLINQRLVKVIDDVNEEDWNLLEKLSMDGTEEFLKEALAFDND------- 107
Query: 265 ILRQAAYVDDVHRRIRE-----FEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319
++ DD + + F+Q +T F PE D + + + + + L S + ++
Sbjct: 108 ---ESDAQDDANNEKEDDGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGNIKSAVK 164
Query: 320 NAL 322
N+L
Sbjct: 165 NSL 167
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 80 AGNA-VFKSGPLFI-SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG 137
+GNA V K+G LF +S G+ W KRWF+L L +++ + + LG
Sbjct: 6 SGNAPVTKAGWLFKQASSGV--KQWNKRWFVLVDRCLFYYKDE---------KEESILGS 54
Query: 138 IDLNNSGSVVVK-ADKKLLTVLFPDGRDG-RAFTLKAESLEDLYDWKTALENA--LAQAP 193
I L + V+ +D F G R + AES E+ W A+ A + P
Sbjct: 55 IPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGP 114
Query: 194 STG 196
S+G
Sbjct: 115 SSG 117
>pdb|3VJZ|A Chain A, Crystal Structure Of The Dna Mimic Protein Dmp19
pdb|3VJZ|B Chain B, Crystal Structure Of The Dna Mimic Protein Dmp19
Length = 166
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ--GKTEFSPEEDAHII 298
+ P L+KA E+HG +E + A + + ++ EFE+ G + E+D ++
Sbjct: 90 IKAVPKVLDKAKALYEQHGKTIETLADGGADIPSLRKQFPEFEEWDGAYYEAAEQDLPLL 149
Query: 299 ADCVK 303
A+ ++
Sbjct: 150 AEHIQ 154
>pdb|3ZYS|C Chain C, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|F Chain F, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 113
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143
V + G L I++ GI K+ WF+LT +L +++ D +K + L++ + L +
Sbjct: 3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKKYMLSVDNLKLRDV 58
Query: 144 GSVVVKADKKLLTVLFPDGR----DGRAFTLKAESLEDLYDWKTALENA 188
+ + K + + + R D R L E+ E++ WK + A
Sbjct: 59 EKGFMSS-KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 106
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Query: 83 AVFKSGPLFISSKGIGWTSWKKRWFIL-THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN 141
A KSG L S + WKK WF L + L+++ D +V++ + I+
Sbjct: 4 AFVKSGWLLRQSTIL--KRWKKNWFDLWSDGHLIYY--DDQTRQNIEDKVHMPMDCIN-- 57
Query: 142 NSGSVVVKADKKLLTVLFPDG-----------RDGRAFTLKAESLEDLYDWKTALENA 188
++ ++ PDG RDG+ +L AES +D WK L+++
Sbjct: 58 ------IRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 131 VNLTLGGIDLNNSGSVV--VKADKKLLTVLFPDGRDGRAFT-----LKAESLEDLYDWKT 183
V+ +GGI N G V+ V +++ L+ G A L A SL DL +
Sbjct: 364 VHYNMGGIPTNYKGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGR 423
Query: 184 ALENALAQA-------PSTGSATGQNGILKNDKAEAANGSV 217
A ++A++ PS G+ ++ DK ANG++
Sbjct: 424 ACALSIAESCRPGDKVPSIKPNAGEESVMNLDKLRFANGTI 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,402,740
Number of Sequences: 62578
Number of extensions: 772032
Number of successful extensions: 1622
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 70
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)