Query 003668
Match_columns 804
No_of_seqs 521 out of 2452
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1451 Oligophrenin-1 and rel 100.0 1.1E-63 2.3E-68 548.5 25.5 355 3-438 206-570 (812)
2 KOG4271 Rho-GTPase activating 100.0 1.3E-46 2.8E-51 431.1 19.7 597 162-789 286-938 (1100)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.3E-39 2.9E-44 331.7 20.7 188 230-435 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 2.8E-39 6E-44 331.5 21.5 196 227-438 2-202 (203)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 4.4E-39 9.6E-44 327.3 21.0 190 229-438 1-191 (192)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 6.2E-39 1.3E-43 327.9 20.5 190 228-435 1-199 (199)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.6E-38 3.4E-43 329.0 21.1 197 229-437 1-207 (216)
8 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.8E-38 3.9E-43 323.6 19.2 189 228-430 1-195 (195)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 3.9E-38 8.4E-43 326.7 21.7 206 227-436 2-215 (220)
10 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.9E-38 6.3E-43 319.9 20.2 184 230-430 1-186 (186)
11 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.4E-38 5.2E-43 319.4 18.6 175 230-437 1-181 (182)
12 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 5E-38 1.1E-42 318.4 20.5 182 230-430 1-187 (187)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 4.4E-38 9.6E-43 319.1 19.1 183 228-430 1-188 (188)
14 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 7.8E-38 1.7E-42 323.1 19.8 188 230-436 1-208 (213)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 1.1E-37 2.4E-42 318.0 20.7 189 229-435 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 8.7E-38 1.9E-42 318.4 19.8 190 226-435 2-195 (195)
17 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.9E-37 4.2E-42 317.7 20.7 191 229-436 1-196 (202)
18 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.7E-37 3.8E-42 317.6 20.1 185 230-430 1-200 (200)
19 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.9E-37 4.1E-42 313.9 19.4 183 230-429 1-185 (186)
20 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 3.7E-37 7.9E-42 312.9 19.3 184 230-435 1-192 (192)
21 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 5.1E-37 1.1E-41 315.4 20.4 186 241-438 6-203 (206)
22 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 6.8E-37 1.5E-41 309.6 20.1 160 230-390 1-163 (185)
23 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 5.7E-37 1.2E-41 319.2 19.6 187 229-435 1-225 (225)
24 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 7.5E-37 1.6E-41 313.6 19.7 186 230-430 1-203 (203)
25 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2E-36 4.2E-41 306.5 20.4 184 230-430 1-186 (186)
26 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.6E-36 3.6E-41 312.8 19.9 186 230-430 1-211 (211)
27 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.2E-36 2.5E-41 309.1 18.6 176 229-437 1-189 (190)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 4.2E-36 9E-41 306.4 20.3 160 230-390 1-165 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 4.1E-36 8.8E-41 304.9 19.9 183 228-430 1-189 (189)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.1E-35 2.5E-40 305.5 21.3 194 230-431 1-206 (207)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.3E-35 2.9E-40 305.3 19.9 183 230-437 1-198 (208)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.6E-35 5.6E-40 297.9 19.8 179 231-431 2-184 (184)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.1E-35 1.3E-39 297.2 20.0 177 241-434 14-192 (193)
34 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 5.4E-35 1.2E-39 299.6 19.4 169 243-430 27-203 (203)
35 KOG4407 Predicted Rho GTPase-a 100.0 5.4E-36 1.2E-40 349.0 13.0 334 84-440 923-1359(1973)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 7E-35 1.5E-39 295.4 18.8 178 230-430 1-187 (187)
37 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 7.1E-35 1.5E-39 300.8 19.1 188 230-437 1-210 (212)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 2.7E-34 5.7E-39 292.8 17.4 174 235-430 6-183 (200)
39 KOG1450 Predicted Rho GTPase-a 100.0 2.7E-31 5.8E-36 303.1 20.9 318 100-436 271-649 (650)
40 smart00324 RhoGAP GTPase-activ 100.0 1.4E-30 3E-35 259.6 20.0 169 243-430 2-173 (174)
41 KOG4270 GTPase-activator prote 100.0 6.2E-29 1.3E-33 283.3 28.0 197 225-437 142-345 (577)
42 KOG2200 Tumour suppressor prot 100.0 4.5E-30 9.9E-35 285.5 16.5 207 226-436 297-511 (674)
43 KOG1117 Rho- and Arf-GTPase ac 100.0 4.4E-30 9.6E-35 292.7 15.8 266 99-436 628-897 (1186)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.4E-29 5.3E-34 261.2 18.1 142 243-390 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 7.1E-29 1.5E-33 244.4 19.7 167 245-430 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 2.1E-29 4.5E-34 288.7 12.4 183 225-440 895-1088(1112)
47 PF00620 RhoGAP: RhoGAP domain 99.9 4.4E-28 9.6E-33 235.5 11.3 144 245-389 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 2.8E-27 6.1E-32 255.6 10.7 196 224-438 248-448 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.1E-25 2.3E-30 248.3 15.4 183 243-436 93-292 (412)
50 KOG1453 Chimaerin and related 99.9 7.7E-24 1.7E-28 257.9 15.1 161 229-390 602-771 (918)
51 KOG4724 Predicted Rho GTPase-a 99.9 1.5E-24 3.3E-29 244.2 7.2 238 224-483 77-315 (741)
52 KOG3564 GTPase-activating prot 99.9 4E-23 8.7E-28 225.3 16.7 175 241-432 359-535 (604)
53 PF14389 Lzipper-MIP1: Leucine 99.9 2.3E-22 5E-27 179.8 9.4 87 680-766 1-88 (88)
54 KOG4271 Rho-GTPase activating 99.7 1.4E-18 3E-23 201.6 8.8 158 227-385 915-1075(1100)
55 KOG1452 Predicted Rho GTPase-a 99.7 6.8E-18 1.5E-22 177.0 12.0 166 224-390 179-353 (442)
56 cd04405 RhoGAP_BRCC3-like RhoG 99.6 6.1E-15 1.3E-19 151.9 13.2 181 228-436 20-229 (235)
57 cd01251 PH_centaurin_alpha Cen 99.6 4.6E-15 1E-19 136.8 10.8 97 86-190 1-101 (103)
58 cd01233 Unc104 Unc-104 pleckst 99.6 7.7E-15 1.7E-19 134.5 10.5 97 84-189 2-98 (100)
59 cd01260 PH_CNK Connector enhan 99.6 2.2E-14 4.8E-19 129.9 10.5 93 86-188 2-96 (96)
60 cd01265 PH_PARIS-1 PARIS-1 ple 99.5 3.6E-14 7.7E-19 129.0 9.9 90 87-188 2-93 (95)
61 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 8E-14 1.7E-18 142.2 12.9 145 245-390 7-166 (198)
62 cd01238 PH_Tec Tec pleckstrin 99.5 4.8E-14 1.1E-18 130.7 9.7 97 85-187 1-105 (106)
63 cd01264 PH_melted Melted pleck 99.5 9.8E-14 2.1E-18 127.3 9.9 91 86-189 2-101 (101)
64 cd01252 PH_cytohesin Cytohesin 99.5 3E-13 6.4E-18 128.7 11.3 98 86-193 2-117 (125)
65 cd01250 PH_centaurin Centaurin 99.4 7E-13 1.5E-17 118.2 10.5 93 86-187 1-93 (94)
66 cd01247 PH_GPBP Goodpasture an 99.4 8.9E-13 1.9E-17 119.0 11.0 90 86-187 1-90 (91)
67 cd01257 PH_IRS Insulin recepto 99.4 1.8E-12 4E-17 119.2 10.7 92 84-187 2-100 (101)
68 cd01249 PH_oligophrenin Oligop 99.4 7.6E-13 1.7E-17 121.2 7.9 97 86-187 1-103 (104)
69 cd01236 PH_outspread Outspread 99.4 1.1E-12 2.4E-17 121.1 8.9 90 86-187 1-102 (104)
70 cd01235 PH_SETbf Set binding f 99.4 1.9E-12 4.1E-17 117.8 10.3 95 86-189 1-101 (101)
71 cd01253 PH_beta_spectrin Beta- 99.4 2.7E-12 5.8E-17 118.0 9.7 97 86-187 1-103 (104)
72 cd01246 PH_oxysterol_bp Oxyste 99.4 4.9E-12 1.1E-16 112.1 10.5 91 86-188 1-91 (91)
73 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 5.4E-12 1.2E-16 119.0 10.6 100 86-190 2-112 (117)
74 PF00169 PH: PH domain; Inter 99.3 1.8E-11 3.8E-16 109.0 12.4 101 84-189 1-103 (104)
75 cd01241 PH_Akt Akt pleckstrin 99.3 9.6E-12 2.1E-16 114.5 10.8 97 84-188 1-101 (102)
76 cd01266 PH_Gab Gab (Grb2-assoc 99.3 8.1E-12 1.8E-16 116.1 10.0 95 87-188 2-107 (108)
77 cd01244 PH_RasGAP_CG9209 RAS_G 99.2 4.1E-11 8.9E-16 109.7 8.5 78 98-188 17-98 (98)
78 cd01263 PH_anillin Anillin Ple 99.2 6.9E-11 1.5E-15 112.2 9.5 102 86-188 3-122 (122)
79 KOG4370 Ral-GTPase effector RL 99.2 4.3E-11 9.4E-16 130.5 8.6 142 243-385 70-253 (514)
80 cd01245 PH_RasGAP_CG5898 RAS G 99.2 6E-11 1.3E-15 108.5 7.9 93 86-187 1-97 (98)
81 KOG0930 Guanine nucleotide exc 99.2 9E-11 2E-15 122.3 9.4 103 84-195 260-381 (395)
82 PF15410 PH_9: Pleckstrin homo 99.1 1.1E-10 2.3E-15 110.6 7.4 99 86-189 2-118 (119)
83 KOG3565 Cdc42-interacting prot 99.1 9.7E-11 2.1E-15 137.8 8.3 145 243-389 217-366 (640)
84 cd01237 Unc112 Unc-112 pleckst 99.1 5.2E-10 1.1E-14 103.0 9.4 91 94-189 12-103 (106)
85 PF15413 PH_11: Pleckstrin hom 99.0 1.2E-09 2.6E-14 102.5 9.6 98 86-188 1-112 (112)
86 cd01219 PH_FGD FGD (faciogenit 99.0 3.5E-09 7.7E-14 97.4 11.0 98 84-190 2-100 (101)
87 smart00233 PH Pleckstrin homol 98.9 8.9E-09 1.9E-13 89.9 11.7 100 85-189 2-101 (102)
88 cd01254 PH_PLD Phospholipase D 98.9 5.1E-09 1.1E-13 99.5 10.2 82 101-188 32-121 (121)
89 PF15409 PH_8: Pleckstrin homo 98.9 1.3E-08 2.8E-13 91.4 9.4 86 88-188 1-88 (89)
90 cd00821 PH Pleckstrin homology 98.7 5E-08 1.1E-12 84.4 8.7 95 86-187 1-95 (96)
91 cd00900 PH-like Pleckstrin hom 98.7 1.3E-07 2.7E-12 82.5 10.5 96 87-188 2-99 (99)
92 KOG0521 Putative GTPase activa 98.7 1.4E-09 3.1E-14 130.9 -2.9 166 5-191 204-370 (785)
93 cd01220 PH_CDEP Chondrocyte-de 98.6 2.5E-07 5.3E-12 85.1 10.5 97 84-190 2-98 (99)
94 cd01256 PH_dynamin Dynamin ple 98.6 2.2E-07 4.8E-12 83.9 9.4 99 84-188 1-104 (110)
95 cd01234 PH_CADPS CADPS (Ca2+-d 98.5 1.2E-07 2.7E-12 86.1 5.2 99 85-192 3-113 (117)
96 KOG4724 Predicted Rho GTPase-a 98.4 2E-07 4.2E-12 107.3 4.8 165 224-389 411-589 (741)
97 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 1E-06 2.2E-11 81.7 7.2 101 86-189 2-108 (114)
98 cd01243 PH_MRCK MRCK (myotonic 98.3 9.5E-06 2.1E-10 76.3 11.4 104 85-188 3-118 (122)
99 PF08101 DUF1708: Domain of un 98.1 2.8E-05 6.1E-10 88.1 13.5 145 245-390 9-168 (420)
100 cd01242 PH_ROK Rok (Rho- assoc 98.1 3.2E-05 6.9E-10 71.8 11.0 102 86-189 2-110 (112)
101 KOG0690 Serine/threonine prote 98.1 3.5E-06 7.7E-11 90.9 5.2 101 83-190 14-117 (516)
102 KOG3640 Actin binding protein 97.9 1.3E-05 2.7E-10 95.6 6.6 107 83-190 989-1107(1116)
103 KOG3751 Growth factor receptor 97.7 7.7E-05 1.7E-09 84.5 8.0 107 81-189 314-424 (622)
104 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00032 7E-09 65.2 10.6 97 83-190 3-99 (104)
105 KOG1090 Predicted dual-specifi 97.5 6.1E-05 1.3E-09 89.8 3.5 96 84-189 1634-1731(1732)
106 KOG0932 Guanine nucleotide exc 97.5 4.6E-05 9.9E-10 86.7 2.1 98 84-189 506-617 (774)
107 PF14593 PH_3: PH domain; PDB: 97.4 0.0011 2.5E-08 61.5 10.5 87 83-189 12-99 (104)
108 KOG2059 Ras GTPase-activating 97.4 0.00027 5.9E-09 82.7 7.3 98 84-191 565-666 (800)
109 cd01261 PH_SOS Son of Sevenles 97.4 0.0011 2.4E-08 62.4 9.8 101 83-190 3-110 (112)
110 PLN00188 enhanced disease resi 97.3 0.00093 2E-08 79.4 10.5 103 83-192 3-112 (719)
111 PTZ00267 NIMA-related protein 97.3 0.00051 1.1E-08 79.6 7.9 99 82-190 375-477 (478)
112 cd01239 PH_PKD Protein kinase 97.3 0.00065 1.4E-08 63.7 6.9 80 85-173 1-82 (117)
113 cd01258 PH_syntrophin Syntroph 97.2 0.0011 2.3E-08 62.0 7.6 100 87-187 2-107 (108)
114 KOG3543 Ca2+-dependent activat 96.7 0.00039 8.6E-09 79.8 -0.0 100 84-192 464-568 (1218)
115 PF15408 PH_7: Pleckstrin homo 96.6 0.00075 1.6E-08 59.7 0.9 93 87-189 1-97 (104)
116 cd01222 PH_clg Clg (common-sit 96.3 0.04 8.7E-07 50.7 10.3 92 84-189 4-95 (97)
117 KOG0517 Beta-spectrin [Cytoske 96.1 0.0001 2.2E-09 92.6 -10.2 102 84-190 2299-2410(2473)
118 KOG1453 Chimaerin and related 95.9 0.0043 9.4E-08 77.5 2.9 160 229-389 462-668 (918)
119 cd01240 PH_beta-ARK Beta adren 95.9 0.011 2.5E-07 54.9 4.7 95 84-189 3-98 (116)
120 PLN02866 phospholipase D 95.8 0.039 8.5E-07 68.5 10.4 104 83-191 181-309 (1068)
121 KOG3723 PH domain protein Melt 95.5 0.0091 2E-07 68.7 3.3 94 84-190 735-837 (851)
122 PTZ00283 serine/threonine prot 95.5 0.033 7.2E-07 65.1 8.0 37 152-190 454-490 (496)
123 PF12814 Mcp5_PH: Meiotic cell 95.3 0.19 4.2E-06 48.0 10.9 99 88-189 13-121 (123)
124 KOG3531 Rho guanine nucleotide 95.2 0.009 2E-07 71.4 1.9 95 85-189 925-1019(1036)
125 KOG0248 Cytoplasmic protein Ma 95.1 0.013 2.7E-07 68.8 2.5 94 84-190 249-342 (936)
126 cd01224 PH_Collybistin Collybi 94.9 0.33 7.2E-06 45.7 10.9 100 84-187 2-105 (109)
127 cd01221 PH_ephexin Ephexin Ple 94.5 0.42 9E-06 46.1 10.8 97 84-186 3-119 (125)
128 cd01232 PH_TRIO Trio pleckstri 94.3 0.69 1.5E-05 43.9 11.9 102 84-190 5-113 (114)
129 cd01223 PH_Vav Vav pleckstrin 93.8 0.3 6.5E-06 46.4 8.2 86 102-190 20-112 (116)
130 KOG1739 Serine/threonine prote 93.8 0.081 1.8E-06 60.3 5.1 94 83-189 23-116 (611)
131 cd01262 PH_PDK1 3-Phosphoinosi 93.7 0.49 1.1E-05 42.9 9.0 86 85-189 2-88 (89)
132 KOG0804 Cytoplasmic Zn-finger 93.3 0.35 7.5E-06 55.0 9.0 112 651-769 347-458 (493)
133 KOG0705 GTPase-activating prot 93.3 0.027 5.9E-07 65.1 0.4 35 154-190 446-480 (749)
134 KOG1449 Predicted Rho GTPase-a 93.2 0.021 4.6E-07 66.1 -0.6 73 357-438 1-73 (670)
135 PF15404 PH_4: Pleckstrin homo 92.8 0.7 1.5E-05 47.5 9.6 32 86-119 1-32 (185)
136 KOG1117 Rho- and Arf-GTPase ac 92.2 0.29 6.3E-06 59.2 6.9 102 84-189 492-601 (1186)
137 cd01228 PH_BCR-related BCR (br 91.8 0.63 1.4E-05 42.6 7.0 88 84-188 3-93 (96)
138 KOG4424 Predicted Rho/Rac guan 91.4 0.24 5.1E-06 57.9 4.8 97 82-190 270-370 (623)
139 COG1579 Zn-ribbon protein, pos 90.9 2.9 6.2E-05 44.7 12.0 70 648-717 10-82 (239)
140 cd01227 PH_Dbs Dbs (DBL's big 90.8 3.7 7.9E-05 40.1 11.7 82 103-190 30-116 (133)
141 PF15405 PH_5: Pleckstrin homo 90.6 0.66 1.4E-05 45.3 6.6 37 152-188 98-134 (135)
142 cd01231 PH_Lnk LNK-family Plec 90.5 1 2.3E-05 41.7 7.2 37 149-187 70-106 (107)
143 PF12240 Angiomotin_C: Angiomo 90.0 0.77 1.7E-05 47.4 6.6 73 672-755 13-87 (205)
144 cd00089 HR1 Protein kinase C-r 89.3 1.2 2.6E-05 38.5 6.4 65 688-764 3-67 (72)
145 PF15406 PH_6: Pleckstrin homo 89.0 0.67 1.4E-05 43.4 4.8 30 155-187 82-111 (112)
146 KOG1449 Predicted Rho GTPase-a 88.6 0.12 2.6E-06 60.1 -0.4 140 227-390 207-355 (670)
147 PF10186 Atg14: UV radiation r 88.3 2.6 5.7E-05 45.5 9.8 115 647-764 26-144 (302)
148 cd01225 PH_Cool_Pix Cool (clon 86.6 3.1 6.8E-05 39.2 7.7 81 102-189 28-109 (111)
149 PF09726 Macoilin: Transmembra 86.2 35 0.00076 42.1 18.6 47 669-715 467-523 (697)
150 cd01226 PH_exo84 Exocyst compl 85.9 4.9 0.00011 37.4 8.5 77 105-189 22-98 (100)
151 KOG1737 Oxysterol-binding prot 83.0 0.88 1.9E-05 55.8 3.1 91 84-188 77-167 (799)
152 KOG4807 F-actin binding protei 82.2 0.027 6E-07 62.2 -9.0 118 650-772 420-546 (593)
153 KOG3549 Syntrophins (type gamm 82.1 2.7 5.9E-05 46.6 6.0 107 80-190 277-387 (505)
154 PF00038 Filament: Intermediat 80.1 8 0.00017 42.4 9.1 65 651-715 50-124 (312)
155 PF12240 Angiomotin_C: Angiomo 80.0 22 0.00048 37.0 11.4 109 649-763 18-153 (205)
156 KOG2391 Vacuolar sorting prote 79.1 4.3 9.3E-05 45.0 6.4 51 653-703 212-262 (365)
157 KOG0995 Centromere-associated 79.1 22 0.00048 42.2 12.4 103 646-765 219-327 (581)
158 PF07820 TraC: TraC-like prote 77.9 5.8 0.00013 36.2 5.8 30 689-718 4-39 (92)
159 PF09726 Macoilin: Transmembra 77.4 69 0.0015 39.6 16.6 32 735-766 484-515 (697)
160 PRK09039 hypothetical protein; 75.9 15 0.00033 41.3 9.8 18 649-666 47-64 (343)
161 KOG1738 Membrane-associated gu 74.9 0.59 1.3E-05 55.2 -1.7 57 84-144 562-619 (638)
162 KOG3551 Syntrophins (type beta 74.9 2.2 4.8E-05 47.9 2.8 107 83-189 291-401 (506)
163 PRK10884 SH3 domain-containing 73.4 26 0.00057 36.7 10.2 32 733-764 140-171 (206)
164 KOG4047 Docking protein 1 (p62 73.2 1.7 3.7E-05 49.9 1.5 31 84-114 8-38 (429)
165 PF10186 Atg14: UV radiation r 71.4 42 0.00091 36.1 11.7 37 736-772 123-159 (302)
166 PF07888 CALCOCO1: Calcium bin 69.4 17 0.00038 43.2 8.5 51 689-739 278-328 (546)
167 KOG0977 Nuclear envelope prote 69.0 39 0.00084 40.3 11.2 99 646-764 111-233 (546)
168 PRK13848 conjugal transfer pro 68.9 12 0.00027 34.1 5.5 46 691-743 7-58 (98)
169 PRK11637 AmiB activator; Provi 68.8 26 0.00057 40.4 9.9 37 735-771 99-135 (428)
170 PF10168 Nup88: Nuclear pore c 68.6 59 0.0013 40.4 13.2 109 649-767 552-667 (717)
171 PF05911 DUF869: Plant protein 68.4 26 0.00055 43.6 10.1 72 690-771 627-698 (769)
172 PF15411 PH_10: Pleckstrin hom 68.0 51 0.0011 31.5 9.9 98 84-185 7-116 (116)
173 TIGR01000 bacteriocin_acc bact 67.6 53 0.0011 38.3 12.2 44 675-718 160-203 (457)
174 TIGR01843 type_I_hlyD type I s 67.3 44 0.00095 37.7 11.2 20 684-703 148-167 (423)
175 PF07798 DUF1640: Protein of u 66.7 41 0.00088 34.2 9.7 88 674-764 67-156 (177)
176 KOG1118 Lysophosphatidic acid 66.2 42 0.00092 37.1 10.0 134 636-782 96-248 (366)
177 KOG2129 Uncharacterized conser 65.9 21 0.00046 40.7 7.9 71 650-720 210-318 (552)
178 PF14362 DUF4407: Domain of un 64.1 1.2E+02 0.0026 33.3 13.4 85 674-763 129-213 (301)
179 KOG3727 Mitogen inducible gene 63.6 1.1 2.4E-05 52.3 -2.5 87 99-189 372-458 (664)
180 KOG2077 JNK/SAPK-associated pr 63.5 57 0.0012 38.8 10.8 98 652-761 319-421 (832)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.4 1.4E+02 0.003 28.9 12.2 28 735-762 101-128 (132)
182 PRK09039 hypothetical protein; 62.6 78 0.0017 35.7 11.8 24 695-718 138-161 (343)
183 COG2433 Uncharacterized conser 62.5 66 0.0014 38.7 11.4 76 668-768 435-510 (652)
184 PF12325 TMF_TATA_bd: TATA ele 61.8 72 0.0016 30.7 9.7 76 650-757 39-114 (120)
185 KOG0996 Structural maintenance 61.7 1.5E+02 0.0033 38.3 14.8 80 675-762 808-894 (1293)
186 PF08317 Spc7: Spc7 kinetochor 61.4 77 0.0017 35.4 11.5 19 684-702 181-199 (325)
187 cd05134 RasGAP_RASA3 RASA3 (or 61.1 3.5 7.5E-05 45.8 0.8 29 83-111 279-310 (310)
188 PF08317 Spc7: Spc7 kinetochor 60.9 45 0.00098 37.2 9.5 97 668-764 127-241 (325)
189 COG1579 Zn-ribbon protein, pos 60.8 1.5E+02 0.0032 32.0 12.8 64 649-714 67-130 (239)
190 PLN02372 violaxanthin de-epoxi 60.5 21 0.00045 40.8 6.6 27 642-668 355-381 (455)
191 PF05700 BCAS2: Breast carcino 59.4 1.9E+02 0.0041 30.5 13.4 102 645-765 98-215 (221)
192 PRK11637 AmiB activator; Provi 59.0 1.3E+02 0.0028 34.8 13.1 17 646-662 168-184 (428)
193 PF04931 DNA_pol_phi: DNA poly 58.9 9.3 0.0002 47.7 4.1 13 295-307 476-488 (784)
194 PF07106 TBPIP: Tat binding pr 58.9 31 0.00068 34.6 7.2 61 691-759 76-136 (169)
195 PF06637 PV-1: PV-1 protein (P 58.7 1.1E+02 0.0025 34.8 11.8 94 652-768 282-378 (442)
196 cd05128 RasGAP_GAP1_like The G 58.6 3.3 7.1E-05 46.1 0.1 27 84-110 286-315 (315)
197 PF09486 HrpB7: Bacterial type 58.3 1E+02 0.0022 31.1 10.5 97 668-767 14-114 (158)
198 cd05394 RasGAP_RASA2 RASA2 (or 58.0 2.4 5.2E-05 47.0 -1.1 27 84-110 283-312 (313)
199 KOG4140 Nuclear protein Ataxin 57.4 71 0.0015 37.4 10.2 42 664-714 273-315 (659)
200 PF06705 SF-assemblin: SF-asse 56.4 1E+02 0.0022 33.0 10.9 43 669-711 45-87 (247)
201 KOG4674 Uncharacterized conser 56.3 31 0.00066 46.4 8.0 100 673-772 791-893 (1822)
202 PF02185 HR1: Hr1 repeat; Int 56.3 27 0.00058 30.0 5.3 62 694-768 1-62 (70)
203 smart00787 Spc7 Spc7 kinetocho 56.3 1.3E+02 0.0027 33.7 11.9 32 646-677 146-177 (312)
204 PF03938 OmpH: Outer membrane 55.5 80 0.0017 30.9 9.3 42 667-708 30-71 (158)
205 KOG3523 Putative guanine nucle 55.0 26 0.00056 41.9 6.4 87 100-186 497-591 (695)
206 PF15619 Lebercilin: Ciliary p 54.7 1.1E+02 0.0025 31.7 10.5 114 648-762 12-148 (194)
207 KOG1029 Endocytic adaptor prot 54.4 1.2E+02 0.0025 37.7 11.6 84 663-764 362-455 (1118)
208 PRK11519 tyrosine kinase; Prov 54.3 1.1E+02 0.0025 37.8 12.4 89 660-758 241-330 (719)
209 PF00038 Filament: Intermediat 54.3 1.8E+02 0.004 31.7 12.9 66 647-712 74-142 (312)
210 PF13870 DUF4201: Domain of un 54.3 90 0.002 31.5 9.7 29 736-764 149-177 (177)
211 PRK12704 phosphodiesterase; Pr 53.9 1E+02 0.0022 36.9 11.3 34 740-773 118-151 (520)
212 PF09755 DUF2046: Uncharacteri 53.1 1.7E+02 0.0037 32.7 11.9 68 696-764 180-247 (310)
213 PF12128 DUF3584: Protein of u 52.7 87 0.0019 41.2 11.5 74 98-188 54-133 (1201)
214 PF11180 DUF2968: Protein of u 52.6 1.1E+02 0.0023 31.9 9.7 85 644-763 101-185 (192)
215 PHA02562 46 endonuclease subun 52.5 1E+02 0.0022 36.6 11.2 38 741-781 257-294 (562)
216 PF11083 Streptin-Immun: Lanti 52.3 51 0.0011 30.6 6.6 60 650-709 1-74 (99)
217 TIGR03185 DNA_S_dndD DNA sulfu 52.2 1.1E+02 0.0024 37.4 11.6 56 650-705 184-241 (650)
218 TIGR03319 YmdA_YtgF conserved 51.9 1.1E+02 0.0024 36.5 11.2 32 741-772 113-144 (514)
219 PF11559 ADIP: Afadin- and alp 51.8 1.8E+02 0.0039 28.5 11.1 20 744-763 131-150 (151)
220 PF10506 MCC-bdg_PDZ: PDZ doma 51.7 39 0.00085 29.3 5.5 25 659-683 2-26 (67)
221 PF08826 DMPK_coil: DMPK coile 51.2 64 0.0014 27.5 6.5 29 677-705 29-57 (61)
222 PF10446 DUF2457: Protein of u 51.2 16 0.00035 42.0 4.0 12 674-685 395-406 (458)
223 KOG1029 Endocytic adaptor prot 51.0 73 0.0016 39.3 9.3 13 675-687 326-338 (1118)
224 TIGR02890 spore_yteA sporulati 49.9 1.5E+02 0.0032 29.9 10.2 91 679-781 4-96 (159)
225 PF09744 Jnk-SapK_ap_N: JNK_SA 49.9 42 0.0009 33.8 6.2 65 692-762 55-119 (158)
226 cd07596 BAR_SNX The Bin/Amphip 49.6 1E+02 0.0022 31.3 9.3 75 676-768 107-181 (218)
227 PF00769 ERM: Ezrin/radixin/mo 48.7 2.9E+02 0.0062 29.8 12.8 40 728-767 78-117 (246)
228 KOG4236 Serine/threonine prote 48.6 21 0.00047 42.2 4.4 102 82-190 411-524 (888)
229 cd05135 RasGAP_RASAL Ras GTPas 47.7 6 0.00013 44.4 -0.1 27 84-110 303-333 (333)
230 KOG0161 Myosin class II heavy 47.6 1.3E+02 0.0029 41.2 11.9 10 352-361 428-437 (1930)
231 PF05557 MAD: Mitotic checkpoi 47.1 15 0.00033 45.3 3.3 81 684-764 451-535 (722)
232 KOG0161 Myosin class II heavy 46.7 1.6E+02 0.0035 40.5 12.4 80 684-763 1010-1093(1930)
233 TIGR02231 conserved hypothetic 45.9 1.3E+02 0.0029 35.6 10.8 35 730-764 136-170 (525)
234 COG5185 HEC1 Protein involved 45.8 2.2E+02 0.0047 33.5 11.6 39 728-766 326-364 (622)
235 KOG0971 Microtubule-associated 45.5 1.2E+02 0.0025 38.3 9.9 113 652-772 428-551 (1243)
236 PF06785 UPF0242: Uncharacteri 44.8 2.1E+02 0.0045 32.2 10.9 90 664-770 136-225 (401)
237 PF07321 YscO: Type III secret 44.8 2.2E+02 0.0047 28.6 10.3 74 674-768 30-103 (152)
238 cd01255 PH_TIAM TIAM Pleckstri 44.7 1.3E+02 0.0028 30.0 8.4 41 150-190 110-155 (160)
239 PF12128 DUF3584: Protein of u 44.6 1.2E+02 0.0027 39.9 11.0 46 675-720 836-881 (1201)
240 TIGR02169 SMC_prok_A chromosom 44.5 1.7E+02 0.0038 37.6 12.4 17 743-759 480-496 (1164)
241 TIGR03007 pepcterm_ChnLen poly 44.3 3.3E+02 0.0072 31.9 13.7 31 735-765 313-343 (498)
242 KOG2910 Uncharacterized conser 44.2 2.3E+02 0.0051 29.5 10.5 26 741-766 72-97 (209)
243 KOG4424 Predicted Rho/Rac guan 43.9 34 0.00073 40.8 5.1 83 99-189 510-595 (623)
244 TIGR02168 SMC_prok_B chromosom 43.7 1.6E+02 0.0036 37.8 11.9 23 741-763 917-939 (1179)
245 PRK09841 cryptic autophosphory 43.4 1.5E+02 0.0032 36.9 11.0 80 671-759 251-331 (726)
246 TIGR01000 bacteriocin_acc bact 43.2 2.5E+02 0.0053 32.8 12.2 25 740-764 237-261 (457)
247 PF08614 ATG16: Autophagy prot 43.1 2.3E+02 0.0051 29.1 10.8 97 652-765 85-184 (194)
248 TIGR02168 SMC_prok_B chromosom 43.1 1.8E+02 0.0039 37.3 12.2 22 741-762 910-931 (1179)
249 COG0419 SbcC ATPase involved i 43.0 2.5E+02 0.0054 35.9 13.1 75 694-778 382-464 (908)
250 PF10267 Tmemb_cc2: Predicted 42.5 6E+02 0.013 29.5 14.9 53 692-757 242-294 (395)
251 PF05266 DUF724: Protein of un 41.9 2.6E+02 0.0056 29.1 10.7 53 685-761 129-181 (190)
252 PHA02562 46 endonuclease subun 41.6 2.1E+02 0.0044 34.0 11.5 56 647-703 298-353 (562)
253 PRK04863 mukB cell division pr 41.2 2.6E+02 0.0056 37.9 13.1 29 740-768 450-478 (1486)
254 PRK00106 hypothetical protein; 41.2 90 0.002 37.4 8.2 34 740-773 133-166 (535)
255 PF05508 Ran-binding: RanGTP-b 41.1 1.3E+02 0.0029 33.4 8.8 111 651-787 45-172 (302)
256 cd01248 PH_PLC Phospholipase C 40.4 1.8E+02 0.0038 27.2 8.6 37 151-187 77-114 (115)
257 COG1196 Smc Chromosome segrega 40.2 2.4E+02 0.0053 37.1 12.7 16 165-180 144-159 (1163)
258 PF14197 Cep57_CLD_2: Centroso 39.7 1.6E+02 0.0034 25.6 7.4 27 740-766 41-67 (69)
259 PF03962 Mnd1: Mnd1 family; I 39.5 1.2E+02 0.0026 31.3 8.0 26 732-757 103-128 (188)
260 TIGR03752 conj_TIGR03752 integ 38.7 1.4E+02 0.0029 35.3 8.9 57 658-714 69-136 (472)
261 PRK02224 chromosome segregatio 38.4 1.5E+02 0.0032 37.4 10.2 15 173-187 109-123 (880)
262 smart00787 Spc7 Spc7 kinetocho 38.3 2.1E+02 0.0045 32.0 10.1 18 684-701 176-193 (312)
263 PF04156 IncA: IncA protein; 38.3 4.4E+02 0.0094 26.6 11.9 36 648-683 81-116 (191)
264 PF15619 Lebercilin: Ciliary p 38.0 1.1E+02 0.0024 31.8 7.4 32 647-678 46-77 (194)
265 TIGR01005 eps_transp_fam exopo 37.7 1.4E+02 0.003 37.1 9.6 21 646-666 286-306 (754)
266 TIGR01843 type_I_hlyD type I s 37.3 2.3E+02 0.0049 32.0 10.6 15 750-764 250-264 (423)
267 TIGR02420 dksA RNA polymerase- 37.3 2.9E+02 0.0062 25.9 9.5 35 746-781 56-90 (110)
268 TIGR03319 YmdA_YtgF conserved 37.0 3E+02 0.0066 32.9 11.8 9 679-687 93-101 (514)
269 PRK02224 chromosome segregatio 36.5 3E+02 0.0064 34.8 12.4 22 686-707 205-226 (880)
270 KOG1189 Global transcriptional 36.3 33 0.00071 42.1 3.5 19 421-439 849-867 (960)
271 KOG4593 Mitotic checkpoint pro 36.1 4.5E+02 0.0097 32.5 12.7 114 649-763 249-394 (716)
272 COG5406 Nucleosome binding fac 36.1 40 0.00086 40.5 4.1 21 117-137 535-555 (1001)
273 PF10146 zf-C4H2: Zinc finger- 35.6 1.9E+02 0.0042 30.9 8.9 70 687-766 39-109 (230)
274 PF11559 ADIP: Afadin- and alp 35.5 4.3E+02 0.0094 25.8 11.2 70 679-766 58-128 (151)
275 KOG3520 Predicted guanine nucl 35.3 52 0.0011 42.4 5.2 46 149-194 681-726 (1167)
276 PF05565 Sipho_Gp157: Siphovir 35.1 1.7E+02 0.0038 29.3 8.1 66 644-709 22-90 (162)
277 PRK00409 recombination and DNA 35.1 2.9E+02 0.0062 34.9 11.7 58 645-706 517-574 (782)
278 KOG1937 Uncharacterized conser 35.0 2.2E+02 0.0048 33.3 9.6 40 665-705 237-279 (521)
279 TIGR03007 pepcterm_ChnLen poly 35.0 2.7E+02 0.0059 32.6 11.0 90 670-763 140-235 (498)
280 PF15175 SPATA24: Spermatogene 34.9 55 0.0012 32.5 4.2 82 695-780 39-128 (153)
281 PLN02678 seryl-tRNA synthetase 34.8 89 0.0019 36.6 6.8 29 734-762 80-108 (448)
282 KOG3433 Protein involved in me 34.3 1E+02 0.0022 31.8 6.2 63 649-714 75-140 (203)
283 PRK13729 conjugal transfer pil 34.2 78 0.0017 37.2 6.1 59 638-703 56-120 (475)
284 PF14282 FlxA: FlxA-like prote 34.1 1.5E+02 0.0032 27.8 6.9 59 691-769 23-81 (106)
285 PRK11281 hypothetical protein; 33.9 2E+02 0.0043 37.7 10.2 89 645-741 57-168 (1113)
286 TIGR01010 BexC_CtrB_KpsE polys 33.5 2.8E+02 0.0062 31.1 10.5 38 674-711 156-195 (362)
287 KOG1937 Uncharacterized conser 33.3 3.8E+02 0.0082 31.5 11.0 127 638-765 283-422 (521)
288 TIGR00606 rad50 rad50. This fa 33.3 3E+02 0.0065 36.7 12.0 21 25-45 4-26 (1311)
289 COG1842 PspA Phage shock prote 33.1 6.3E+02 0.014 27.0 12.5 22 681-702 53-74 (225)
290 PRK11546 zraP zinc resistance 32.9 2.5E+02 0.0054 28.0 8.5 68 684-769 51-119 (143)
291 PF06698 DUF1192: Protein of u 32.8 1E+02 0.0023 26.0 5.0 32 684-715 25-56 (59)
292 PRK10361 DNA recombination pro 32.6 6.6E+02 0.014 29.9 13.3 47 657-703 69-115 (475)
293 TIGR02559 HrpB7 type III secre 32.6 4.8E+02 0.01 26.4 10.4 100 663-767 9-114 (158)
294 PF02403 Seryl_tRNA_N: Seryl-t 32.3 1.4E+02 0.0031 27.5 6.5 33 732-764 67-99 (108)
295 PRK03918 chromosome segregatio 32.0 4.1E+02 0.009 33.4 12.6 11 373-383 13-23 (880)
296 PRK10884 SH3 domain-containing 32.0 2.2E+02 0.0047 30.0 8.5 53 649-705 94-150 (206)
297 PF14817 HAUS5: HAUS augmin-li 31.9 90 0.0019 38.2 6.4 40 665-704 52-96 (632)
298 PF04714 BCL_N: BCL7, N-termin 31.9 22 0.00048 29.0 0.9 20 99-118 27-46 (52)
299 COG1196 Smc Chromosome segrega 31.3 4.1E+02 0.0088 35.0 12.7 57 649-705 296-362 (1163)
300 PRK12705 hypothetical protein; 31.1 1.6E+02 0.0035 35.2 8.1 19 685-703 61-79 (508)
301 TIGR03794 NHPM_micro_HlyD NHPM 31.0 3.6E+02 0.0079 30.9 11.0 25 739-763 227-251 (421)
302 PHA03187 UL14 tegument protein 30.8 1.4E+02 0.0031 32.7 6.9 80 685-767 7-86 (322)
303 PF15070 GOLGA2L5: Putative go 30.4 3.2E+02 0.0069 33.5 10.6 52 649-704 88-139 (617)
304 COG4372 Uncharacterized protei 30.1 3.5E+02 0.0076 31.1 10.0 16 744-759 264-279 (499)
305 KOG0993 Rab5 GTPase effector R 29.9 3.1E+02 0.0068 31.7 9.5 51 694-761 441-491 (542)
306 PF07888 CALCOCO1: Calcium bin 29.8 5.7E+02 0.012 30.9 12.2 16 740-755 221-236 (546)
307 TIGR02971 heterocyst_DevB ABC 29.5 4.7E+02 0.01 28.6 11.2 78 668-764 127-204 (327)
308 TIGR03495 phage_LysB phage lys 29.5 3E+02 0.0065 27.1 8.4 52 741-792 70-121 (135)
309 KOG3130 Uncharacterized conser 29.3 46 0.00099 38.0 3.1 28 469-496 280-307 (514)
310 TIGR01147 V_ATP_synt_G vacuola 29.2 3.5E+02 0.0076 25.8 8.6 92 659-758 7-98 (113)
311 KOG0612 Rho-associated, coiled 28.9 2.1E+02 0.0045 37.4 8.8 75 684-773 746-820 (1317)
312 PRK10929 putative mechanosensi 28.8 4.4E+02 0.0096 34.6 12.0 60 646-705 171-233 (1109)
313 PF13851 GAS: Growth-arrest sp 28.7 4.5E+02 0.0098 27.4 10.2 63 649-715 28-90 (201)
314 PF09304 Cortex-I_coil: Cortex 28.6 3.3E+02 0.0072 25.8 8.0 26 650-682 4-29 (107)
315 PF14197 Cep57_CLD_2: Centroso 28.5 2E+02 0.0044 25.0 6.3 55 651-705 1-65 (69)
316 KOG4095 Uncharacterized conser 28.5 23 0.0005 35.1 0.6 22 99-120 28-49 (165)
317 KOG3915 Transcription regulato 27.8 2.2E+02 0.0047 33.4 8.0 80 652-746 500-583 (641)
318 KOG0612 Rho-associated, coiled 27.8 4.3E+02 0.0093 34.7 11.2 20 748-767 562-581 (1317)
319 PF11932 DUF3450: Protein of u 27.4 2.6E+02 0.0056 29.9 8.4 140 650-795 44-189 (251)
320 PF15188 CCDC-167: Coiled-coil 27.3 2E+02 0.0043 26.2 6.1 40 728-773 31-70 (85)
321 PF08647 BRE1: BRE1 E3 ubiquit 27.2 3.4E+02 0.0074 24.9 8.0 66 649-714 4-79 (96)
322 PF08657 DASH_Spc34: DASH comp 27.2 1.2E+02 0.0025 33.1 5.6 74 678-751 185-258 (259)
323 KOG0250 DNA repair protein RAD 27.1 3.9E+02 0.0084 34.6 10.7 49 652-703 338-388 (1074)
324 PF08172 CASP_C: CASP C termin 27.1 2.5E+02 0.0053 30.4 8.1 27 734-760 95-121 (248)
325 PF10234 Cluap1: Clusterin-ass 27.1 1.7E+02 0.0038 32.0 6.9 29 691-719 128-156 (267)
326 TIGR01005 eps_transp_fam exopo 27.0 6.1E+02 0.013 31.6 12.7 78 693-770 236-340 (754)
327 TIGR01069 mutS2 MutS2 family p 27.0 4.2E+02 0.009 33.4 11.1 56 645-704 512-567 (771)
328 PF03148 Tektin: Tektin family 26.9 5E+02 0.011 29.7 11.1 107 653-766 231-351 (384)
329 KOG1264 Phospholipase C [Lipid 26.6 55 0.0012 40.5 3.3 33 84-118 475-507 (1267)
330 PF06005 DUF904: Protein of un 26.2 2.7E+02 0.0058 24.4 6.7 44 659-702 8-54 (72)
331 COG1842 PspA Phage shock prote 26.2 8.1E+02 0.018 26.1 11.6 25 740-764 121-145 (225)
332 PF03962 Mnd1: Mnd1 family; I 26.0 1.9E+02 0.0041 29.9 6.7 18 687-704 110-127 (188)
333 KOG0577 Serine/threonine prote 26.0 97 0.0021 37.6 5.0 64 695-766 822-885 (948)
334 PF02841 GBP_C: Guanylate-bind 25.8 4.4E+02 0.0095 28.9 10.0 36 673-708 222-257 (297)
335 KOG3156 Uncharacterized membra 25.8 4.5E+02 0.0097 27.9 9.2 72 690-764 126-199 (220)
336 PF10359 Fmp27_WPPW: RNA pol I 25.6 2.7E+02 0.0058 32.9 8.7 34 734-767 195-228 (475)
337 KOG0996 Structural maintenance 25.5 4.8E+02 0.01 34.2 11.0 71 650-722 365-440 (1293)
338 PF07439 DUF1515: Protein of u 25.4 3.5E+02 0.0075 25.8 7.5 62 685-759 6-67 (112)
339 PF02841 GBP_C: Guanylate-bind 25.4 6.1E+02 0.013 27.8 11.0 37 673-709 229-265 (297)
340 KOG1264 Phospholipase C [Lipid 25.3 96 0.0021 38.6 4.9 41 150-190 871-911 (1267)
341 KOG3564 GTPase-activating prot 24.8 3.4E+02 0.0073 32.1 8.8 97 657-764 12-109 (604)
342 KOG0977 Nuclear envelope prote 24.8 4.3E+02 0.0093 31.9 10.1 78 686-766 105-189 (546)
343 PF04156 IncA: IncA protein; 24.7 7.3E+02 0.016 25.0 13.2 16 692-707 107-122 (191)
344 KOG3119 Basic region leucine z 24.7 6.1E+02 0.013 27.7 10.7 33 668-700 200-235 (269)
345 cd04769 HTH_MerR2 Helix-Turn-H 24.6 1.7E+02 0.0037 27.5 5.6 42 676-717 75-116 (116)
346 PF08549 SWI-SNF_Ssr4: Fungal 24.6 1.5E+02 0.0032 36.3 6.3 58 650-714 354-412 (669)
347 PF05667 DUF812: Protein of un 24.5 6.1E+02 0.013 31.0 11.6 128 647-774 341-485 (594)
348 KOG1832 HIV-1 Vpr-binding prot 24.5 59 0.0013 40.7 3.0 10 228-237 1162-1171(1516)
349 PRK12704 phosphodiesterase; Pr 24.3 6.8E+02 0.015 30.1 11.8 16 678-693 98-113 (520)
350 PF08232 Striatin: Striatin fa 24.0 2.7E+02 0.0058 27.2 7.0 52 653-718 23-77 (134)
351 KOG1060 Vesicle coat complex A 24.0 7.4E+02 0.016 31.3 11.8 131 230-364 323-479 (968)
352 PRK00106 hypothetical protein; 23.8 6.7E+02 0.015 30.3 11.6 17 678-694 113-129 (535)
353 PRK12787 fliX flagellar assemb 23.7 2.7E+02 0.0059 27.5 6.9 58 677-753 63-137 (138)
354 KOG4657 Uncharacterized conser 23.7 1.1E+02 0.0023 32.6 4.3 90 651-748 58-147 (246)
355 KOG0976 Rho/Rac1-interacting s 23.7 5.7E+02 0.012 32.2 10.7 87 644-760 312-407 (1265)
356 PF15030 DUF4527: Protein of u 23.4 3.3E+02 0.007 29.5 7.8 99 646-751 14-133 (277)
357 PF08581 Tup_N: Tup N-terminal 23.3 2.7E+02 0.0058 24.9 6.2 50 655-704 25-74 (79)
358 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.3 3.9E+02 0.0084 25.8 8.0 46 659-704 70-115 (132)
359 PF09325 Vps5: Vps5 C terminal 23.2 4.3E+02 0.0094 27.3 9.0 37 731-767 162-198 (236)
360 PF07798 DUF1640: Protein of u 23.0 3.2E+02 0.0069 27.7 7.7 76 672-756 76-155 (177)
361 PRK11281 hypothetical protein; 22.9 6.4E+02 0.014 33.2 11.9 41 665-705 212-252 (1113)
362 COG4942 Membrane-bound metallo 22.9 3.6E+02 0.0078 31.4 8.7 78 682-769 33-110 (420)
363 PF11500 Cut12: Spindle pole b 22.8 3.5E+02 0.0076 27.2 7.6 65 682-758 72-138 (152)
364 PF07111 HCR: Alpha helical co 22.7 4.1E+02 0.0088 32.9 9.4 102 646-753 329-433 (739)
365 PF09006 Surfac_D-trimer: Lung 22.7 95 0.0021 25.0 2.9 17 748-764 1-17 (46)
366 PF04012 PspA_IM30: PspA/IM30 22.6 8.7E+02 0.019 25.1 12.7 101 648-768 16-120 (221)
367 PF07106 TBPIP: Tat binding pr 22.5 2.6E+02 0.0056 28.0 6.9 58 648-705 72-134 (169)
368 KOG2896 UV radiation resistanc 22.4 3.2E+02 0.007 31.2 8.0 31 675-705 133-163 (377)
369 KOG4370 Ral-GTPase effector RL 22.3 1.1E+02 0.0023 35.5 4.4 34 293-326 118-151 (514)
370 PF10828 DUF2570: Protein of u 22.3 2.9E+02 0.0064 25.9 6.7 36 650-685 27-62 (110)
371 KOG0288 WD40 repeat protein Ti 22.2 5E+02 0.011 30.2 9.5 27 735-761 79-105 (459)
372 PF09731 Mitofilin: Mitochondr 22.2 9.7E+02 0.021 28.8 12.8 25 738-762 377-401 (582)
373 KOG1899 LAR transmembrane tyro 22.0 5.1E+02 0.011 31.7 9.8 68 641-715 101-174 (861)
374 TIGR03185 DNA_S_dndD DNA sulfu 21.9 6.6E+02 0.014 30.8 11.4 98 648-764 421-520 (650)
375 PF15272 BBP1_C: Spindle pole 21.9 7.7E+02 0.017 25.9 10.1 15 750-764 136-150 (196)
376 PF10458 Val_tRNA-synt_C: Valy 21.5 3.7E+02 0.008 22.8 6.6 64 692-758 2-65 (66)
377 PF05529 Bap31: B-cell recepto 21.3 4.5E+02 0.0097 26.8 8.5 76 648-761 115-190 (192)
378 PRK10947 global DNA-binding tr 21.3 1.5E+02 0.0033 29.1 4.7 49 647-695 20-68 (135)
379 KOG0250 DNA repair protein RAD 21.2 5.8E+02 0.012 33.2 10.6 107 648-764 661-773 (1074)
380 PF13514 AAA_27: AAA domain 21.2 1.4E+03 0.029 30.1 14.7 130 637-767 231-381 (1111)
381 PRK13182 racA polar chromosome 21.0 3.1E+02 0.0067 28.1 7.1 69 676-763 81-149 (175)
382 PRK08032 fliD flagellar cappin 21.0 3.3E+02 0.0071 32.0 8.3 58 678-762 404-461 (462)
383 smart00742 Hr1 Rho effector or 20.8 3.9E+02 0.0084 22.0 6.4 54 696-763 3-56 (57)
384 COG2960 Uncharacterized protei 20.6 4.1E+02 0.0089 25.0 6.9 48 706-763 39-90 (103)
385 KOG2070 Guanine nucleotide exc 20.4 1.3E+02 0.0028 35.4 4.6 56 664-719 597-655 (661)
386 PF11285 DUF3086: Protein of u 20.4 1.2E+02 0.0027 32.8 4.1 23 684-706 8-33 (283)
387 PLN02320 seryl-tRNA synthetase 20.4 2.2E+02 0.0047 34.0 6.6 35 733-767 131-165 (502)
388 PRK05431 seryl-tRNA synthetase 20.3 2.3E+02 0.005 32.9 6.8 36 733-768 67-102 (425)
389 PRK11239 hypothetical protein; 20.2 1.2E+02 0.0026 32.0 3.9 23 742-764 186-208 (215)
390 PRK10929 putative mechanosensi 20.2 4.1E+02 0.0089 34.9 9.4 12 695-706 117-128 (1109)
391 PRK15361 pathogenicity island 20.1 82 0.0018 32.5 2.6 24 372-395 1-25 (195)
392 PF08614 ATG16: Autophagy prot 20.0 3.8E+02 0.0083 27.5 7.6 46 650-695 69-114 (194)
393 KOG0241 Kinesin-like protein [ 20.0 1.9E+02 0.0041 36.9 5.9 25 605-630 512-536 (1714)
No 1
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-63 Score=548.50 Aligned_cols=355 Identities=22% Similarity=0.331 Sum_probs=299.0
Q ss_pred ceeecCCCchhhhccccccccccccceeeccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCC
Q 003668 3 IFQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAG 81 (804)
Q Consensus 3 ~~~~~~~~~~~~~~d~~~~~~~l~~~iq~tR~-fe~tr~~~e~l~~~~~~m~~~p~~~~~s~~pp~~~~~p~~~~~~~~~ 81 (804)
+|.|||.|- |||+||.||+++||+.|||||+ |++||.++|+| +++|.++|. +. +.+
T Consensus 206 lf~f~h~g~-el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeL---kKkmke~p~----------------e~---k~p 262 (812)
T KOG1451|consen 206 LFSFFHVGS-ELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEEL---KKKMKESPT----------------ED---KRP 262 (812)
T ss_pred HHHHhhhhH-HHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHH---HHHHhhCcc----------------cc---cCC
Confidence 355666665 9999999999999999999999 99999999999 999998885 22 122
Q ss_pred CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC--CCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI--PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (804)
Q Consensus 82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~--p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~ 159 (804)
.+.+++||||.++|...+++|.|+||+|.+.+..|.+-.-+.+ ...|+..++.|+.|..+..+ .++|||||++.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktd----SIdKRFCFDve 338 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTD----SIDKRFCFDVE 338 (812)
T ss_pred CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCccc----ccccceeeeee
Confidence 2368999999999999999999999999999887766443322 23456667999999999885 55999999999
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHHHhccCCCCCCCCccccccccchhhhccCchhhhcccCCCCCccccchhHhhh
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALE 239 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~k~~k~~vFGvpLe~ll~ 239 (804)
...++|. +++||.+++++..||.||+++. |.+. ++.+ + +..+. ..+
T Consensus 339 ~~erpgv-iTmQALSE~drrlWmeAMDG~e---p~Y~--s~~~-~-------~~~~~-------------------~qL- 384 (812)
T KOG1451|consen 339 VEERPGV-ITMQALSEKDRRLWMEAMDGAE---PSYT--SGEN-C-------STYKQ-------------------TQL- 384 (812)
T ss_pred ecccCCe-eehHhhhhhHHHHHHHHhcCCC---cccc--Cccc-c-------chhhh-------------------hhh-
Confidence 9988875 8999999999999999999985 4442 1222 0 00000 111
Q ss_pred cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHH-hcC---CCC--CCCCCChhhhHHHHHHHHhhCCCCC
Q 003668 240 DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREF-EQG---KTE--FSPEEDAHIIADCVKYVIRELPSSP 313 (804)
Q Consensus 240 ~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~l-d~g---~~~--~~~~~d~h~vAslLK~fLReLPePL 313 (804)
.+-...||++||+.|+.+|++++|+||..|.+.+|++|+..+ |.. +.+ ....||+.+|++.||.|||.||+||
T Consensus 385 -d~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL 463 (812)
T KOG1451|consen 385 -DDIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL 463 (812)
T ss_pred -hhhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence 124578999999999999999999999999999999998875 432 222 2257899999999999999999999
Q ss_pred CChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCC
Q 003668 314 VPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAG 392 (804)
Q Consensus 314 lp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~ 392 (804)
+++.++..||.|++.++ +.|+.+||.+++ +||+.||.+|..||+||.+|+.|+..|.||+.||+|||||+||||++
T Consensus 464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVH-kLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE-- 540 (812)
T KOG1451|consen 464 MTYELHKVFINAAKSDNQTYRVDAIHSLVH-KLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE-- 540 (812)
T ss_pred hHHHHHHHHHHHHhccchhhhHHHHHHHHH-hccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH--
Confidence 99999999999999999 999999999998 99999999999999999999999999999999999999999999984
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668 393 ECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 393 ~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (804)
|+ ++|+|.++.+|-||++||+||++||...
T Consensus 541 ----ET------------VAAiMdIKFQNIVVEILIEnyeKIF~t~ 570 (812)
T KOG1451|consen 541 ----ET------------VAAIMDIKFQNIVVEILIENYEKIFKTK 570 (812)
T ss_pred ----HH------------HHHHHcchhhhhhHHHHHhhhHHHhcCC
Confidence 33 5777777777878999999999999844
No 2
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-46 Score=431.13 Aligned_cols=597 Identities=28% Similarity=0.271 Sum_probs=463.5
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHHHhccCCCC-CCCCccccccccchhhhccCc-hhhhccc-CCCCCccccchhHhh
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALENALAQAPST-GSATGQNGILKNDKAEAANGS-VEQLKEK-PVKFPVIGRPILLAL 238 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~-~~~~~~~~if~~~~~~~~~~s-~~~~~~k-~~k~~vFGvpLe~ll 238 (804)
..+++.|...+++-++..+|-.++..+...+|.+ +.+.+|+|+|...+..+..++ +--+.+- ++.+.++|+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4457788999999999999999999999889988 788999999999877655443 3333433 888999999998888
Q ss_pred hcCCCCcHHHHHHHHHHHHcCCccCC---eeecCC-CHHHHHHHHHHHh-cCCCCCC--CCCChh--hhHHHHH--HHHh
Q 003668 239 EDVDGTPSFLEKAIRFIEEHGVQVEG---ILRQAA-YVDDVHRRIREFE-QGKTEFS--PEEDAH--IIADCVK--YVIR 307 (804)
Q Consensus 239 ~~~~~VP~~l~~~i~~Le~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~~--~~~d~h--~vAslLK--~fLR 307 (804)
+..++-|.|..+.+.+|+..|+..|| |-|.++ +...|+.-+..|+ .|+..+. ..++|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 88889999999999999999999999 999999 7777777666675 5664443 345888 5788888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCc-hHHHHHHHHHHHhc--CChhHHH----HHHHHHHHHHHHHhhcccCCCCcc-hh
Q 003668 308 ELPSSPVPASCCNALLEA--RRTDR-GSRVSAMRTAILET--FPEPNRK----LLQRILMMMQTVASSKNQNRMSTS-AV 377 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a--~~~~~-~~ri~~i~~lI~~~--LP~~Nr~----lL~~Ll~~L~~V~~~s~~NkMt~~-NL 377 (804)
.++..+.|...+..+..+ +...- +.|+..+...|.+. .|.+|+. ++.+|+..+..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999888888877 55544 77999999999877 8999888 888888888999999999999999 99
Q ss_pred hhhhcc-cccC-CCCCCccccccc-cccCCCChHH----HHHHHHHHH-HHHHHHHHHHhhcccccCCCCCCcccc----
Q 003668 378 AACMAP-LLLR-PLLAGECEIETD-FNVGGDGSAQ----LLQAAAAAN-HAQAIVITLLEEYDKIFGEGSASPEEL---- 445 (804)
Q Consensus 378 Av~FgP-tLlr-p~~~~~~~~e~d-~~~~g~~s~q----l~~a~~~~~-~~~~IVe~LIeny~~IF~e~~~s~~~l---- 445 (804)
+.|.+| .|++ |-..+.|.++.. |++.++...+ ++.|...++ .+|.+|..+++.|..||.++.++....
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 6777 667889999987 9999999988 777777777 599999999999999999875554211
Q ss_pred --------ccccccCCCCCCCCCCCCCc-CCCCCCCCCCCCCCCCCCCcccccCCCCccCCCCCCCccccccccCCCccc
Q 003668 446 --------YSESELSGSGTEEATDDDES-YEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFL 516 (804)
Q Consensus 446 --------~~ds~~~~~~sees~d~d~~-~~d~~y~s~e~e~~~d~d~d~e~~~~g~~s~~~~~~~~~~~~~~~~~~~~~ 516 (804)
+..+...++.-..-.|..+- .+++.|+..+|. ........+......+| +|.|.+ ++
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~----------~~a~~~tee~~~~Sp~~-s~~~~~---~~ 671 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNA----------AEACSTTEEVFNFSPRD-SSPYCN---SN 671 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccc----------cccccCchhhcCCChhh-cccccC---CC
Confidence 22222222222221111111 111222222221 11122223333444455 777777 66
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCCCCCcccccCCcccccccccccccccCCCcccccccccccccccCCCCCcccc
Q 003668 517 YYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFK 596 (804)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (804)
.+|+| .++|..-..+.+.+.+++.|..-+...++.+.+.+++.. .+...++...+..| .++..++
T Consensus 672 ~~d~d-------~ds~p~~Sp~~e~t~lsst~k~~S~~~~d~g~~~~~i~~------~~~n~~~~r~i~~V--s~pi~Pk 736 (1100)
T KOG4271|consen 672 LQDSD-------EDSPPSYSPFREDTSLSSTSKDHSKLSMDLGGNDVGISF------TMNNFESKRNINKV--SPPIKPK 736 (1100)
T ss_pred ccccC-------CCCCCCcCCccCcccccCCccccccccccccCCCCCccc------ccchhHhhhhcccC--CCCCCCC
Confidence 77777 233333333455567888887777777877766555411 11122333322222 2333344
Q ss_pred cCCCCCccccccC-CCCCCCCcCCCCCccccccccccccCCCcCCCCCCchhhhhhh-----hhcchHHHHHHHHHhhhc
Q 003668 597 LNCQSPKSCLEKS-SPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQR-----LEDTKSDLQRKIADEVKG 670 (804)
Q Consensus 597 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 670 (804)
.-.+.....+.|+ ..-+..+..+++|...|||+.+.|++.+|++|.+++|++.||| ++.+|-|+|+||+||+|+
T Consensus 737 ~vs~dvt~~a~kp~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~ 816 (1100)
T KOG4271|consen 737 AVSPDVTFDATKPDLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKN 816 (1100)
T ss_pred cCCCCcccccccCcccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhc
Confidence 4455666667777 4445577778899999999999999999999999999999999 999999999999999999
Q ss_pred chhHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhh--hcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 003668 671 NEILEASLESRKKALHERRLALE-NDVARLKDQLQKERDKRTAMEAG--LGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (804)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~le-~~v~~l~~~l~~e~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (804)
|+.||||+||||+++++||.+|| +++.|||+++|+|+..|.+...| +..+.|+. +..-.|+|+++.|+.+..+|.|
T Consensus 817 ~~~~QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD 895 (1100)
T KOG4271|consen 817 NNKLQASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD 895 (1100)
T ss_pred chhhhhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc
Confidence 99999999999999999999999 99999999999999999999998 77777755 6677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhccCCCCCCccccccccccccc
Q 003668 748 IINLKQKAKDLRVQLS--EQLEKNDGFVGDSSNQLHQTSTKLYA 789 (804)
Q Consensus 748 ~~~l~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (804)
++|++|+.+.+.+.+ ++++++..++.|+...++.+++|+.+
T Consensus 896 -a~lktk~~n~pa~~stt~~s~~~~~~l~~~~t~~k~ip~~~ek 938 (1100)
T KOG4271|consen 896 -AKLKTKTKNTPARRSTTWESNYFLTPLQDAVTSEKPIPIFLEK 938 (1100)
T ss_pred -ccccccccCCcccccchhhhhccCCcccccccCCcccchHHHH
Confidence 999999999999999 99999999999999999999988654
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.3e-39 Score=331.71 Aligned_cols=188 Identities=20% Similarity=0.388 Sum_probs=167.5
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcC-C-CCCC--CCCChhhhHHHHHH
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADCVKY 304 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vAslLK~ 304 (804)
||+||+.++++ +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.+|++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 99999999987 456999999999999999999999999999999999999999974 3 2332 23489999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (804)
Q Consensus 305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP 383 (804)
|||+||+||||.++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALM-LLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999998887 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF 435 (804)
+|||++.. + . +..+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~------~--------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPED------S--------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCc------c--------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 99999731 1 0 2233445667889999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-39 Score=331.50 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=173.7
Q ss_pred CCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCChhhhHHHH
Q 003668 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCV 302 (804)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslL 302 (804)
+++||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+|.|.... ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 57999999988875 5679999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
|.|||+||+||+|.++|+.|+.+.+..+ ..|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN-KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998877 789999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (804)
||+|||++.. + +. .+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~------~--------~~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNE------G--------SL-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCC------C--------hh-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 9999999731 1 01 11223345678999999999999999975
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-39 Score=327.35 Aligned_cols=190 Identities=21% Similarity=0.399 Sum_probs=173.6
Q ss_pred ccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHhh
Q 003668 229 VIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRE 308 (804)
Q Consensus 229 vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLRe 308 (804)
+||+||+.++. +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+|+|.......+|+|+||++||+|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999888 67899999999999999999999999999999999999999999976555678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (804)
Q Consensus 309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr 387 (804)
||+||+|.+.|+.|+.+++..+ ..++..++.++. +||..|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLD-KLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998877 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (804)
++... .........++.+|++||+||+.||+++
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 97311 0123345678899999999999999875
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=6.2e-39 Score=327.93 Aligned_cols=190 Identities=23% Similarity=0.420 Sum_probs=167.7
Q ss_pred CccccchhHhhhcC-----CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHH
Q 003668 228 PVIGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC 301 (804)
Q Consensus 228 ~vFGvpLe~ll~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAsl 301 (804)
.|||+||++++... ..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 48999999888542 3499999999999999999999999999999999999999999964 34456899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDR---GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (804)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~l~a~~~~~---~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 378 (804)
||.|||+||+||+|.++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVS-ILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999877543 677889999885 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF 435 (804)
+||||+|||++. ++ . ..++......+.+|++||+||++||
T Consensus 160 ivf~P~llr~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------ED--------P---ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CC--------H---HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999973 22 1 2234455677889999999999998
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-38 Score=328.97 Aligned_cols=197 Identities=26% Similarity=0.339 Sum_probs=172.9
Q ss_pred ccccchhHhhhc------CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCChhhhH
Q 003668 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIA 299 (804)
Q Consensus 229 vFGvpLe~ll~~------~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vA 299 (804)
|||+||+.++.+ +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.++.+.. ......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 799999999976 34699999999999999999999999999999999999999998631 223457999999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (804)
Q Consensus 300 slLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 378 (804)
++||.|||+||+||||.++|+.|+.+.+..+ ..++.+++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988877 788999999885 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
+||||+||++..... .+...+.+.+..+..++.||++||+|++.||..
T Consensus 160 ivfaP~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~ 207 (216)
T cd04391 160 MIMAPNLFPPRGKHS-----------KDNESLQEEVNMAAGCANIMRLLIRYQDLLWTV 207 (216)
T ss_pred HHhccccCCCCCCCC-----------CcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 999999999873211 111233455667778899999999999999973
No 8
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-38 Score=323.64 Aligned_cols=189 Identities=22% Similarity=0.327 Sum_probs=165.4
Q ss_pred CccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC---CCCChhhhHHHH
Q 003668 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS---PEEDAHIIADCV 302 (804)
Q Consensus 228 ~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~---~~~d~h~vAslL 302 (804)
++||+||+.++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.+|+|... +. ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999988865 56899999999999999999 699999999999999999999998532 21 346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
|.|||+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQ-QLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999998877 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
||+|||++... + ..+ +-.++.+....++.||++||+|
T Consensus 159 ~P~L~~~~~~~-----~-~~~------~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIE-----S-ACF------SGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccc-----c-ccc------hHHHHHHHHhhhhhheehhhcC
Confidence 99999997311 1 001 1134566677788899999986
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-38 Score=326.72 Aligned_cols=206 Identities=21% Similarity=0.352 Sum_probs=172.1
Q ss_pred CCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHH
Q 003668 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKY 304 (804)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~ 304 (804)
+.|||+||+.++++ +..||.+|.+|+.||+.+|+++|||||++|+..+|++|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988875 5679999999999999999999999999999999999999999863 334456799999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (804)
Q Consensus 305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP 383 (804)
|||+||+||||+++|+.|+.+.+..+ ++++.+++.++. +||+.|+.+|++|+.||++|+.|++.|+||+.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999987766 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccccc---cc--ccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 384 LLLRPLLAGECEIET---DF--NVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 384 tLlrp~~~~~~~~e~---d~--~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
+||++.......+.. -+ ...|... ...+.....+..+|.+||+||+.||.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999986321100000 00 0011111 11234455678899999999999996
No 10
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.9e-38 Score=319.85 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=165.3
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhh
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLRe 308 (804)
||+||+.++.++..||.+|.+|++||+++|+.+|||||++|+..+++++++.++.|.. .....+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 9999999988888999999999999999999999999999999999999999998742 334567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (804)
Q Consensus 309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr 387 (804)
||+||||+++|+.|+.+.+..+ .+++.+++.+|. +||+.|+.+|++|+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLE-QLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999988877 789999999885 99999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
++.. .+ . +..+....+.+.+|++||+.
T Consensus 160 ~~~~-----~d--------~---~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDS-----SD--------P---LTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCC-----CC--------H---HHHHHhhhhhHHHHHHHhhC
Confidence 8631 11 1 23445677888999999973
No 11
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.4e-38 Score=319.42 Aligned_cols=175 Identities=21% Similarity=0.371 Sum_probs=163.0
Q ss_pred cccchhHhhhcC-----CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHH
Q 003668 230 IGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (804)
Q Consensus 230 FGvpLe~ll~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (804)
||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+|+++++.+++|.......+|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999988763 359999999999999999999999999999999999999999987655557899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (804)
Q Consensus 305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP 383 (804)
|||+||+||||.++|+.|+.++...+ .+|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLK-ELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999988877 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 997653 4899999999999985
No 12
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-38 Score=318.35 Aligned_cols=182 Identities=28% Similarity=0.412 Sum_probs=162.7
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC--CCCCChhhhHHHHHHH
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF--SPEEDAHIIADCVKYV 305 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~--~~~~d~h~vAslLK~f 305 (804)
||+||+.++++ +..||.+|.+|++||+.+|+++|||||++|+...+++++..+|.|.. ++ ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999876 55799999999999999999999999999999999999999999753 22 2356999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccc
Q 003668 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (804)
Q Consensus 306 LReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPt 384 (804)
||+||+||||+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIK-SLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999887 899999999886 99999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 385 LLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 385 Llrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
|||++. ++ ...+.....++.||++||+|
T Consensus 160 ll~~~~------~~------------~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQ------ET------------GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCC------cc------------hHHHHHhHHHHHHHHHHhhC
Confidence 999973 11 11223445788999999985
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=4.4e-38 Score=319.05 Aligned_cols=183 Identities=20% Similarity=0.360 Sum_probs=164.9
Q ss_pred CccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCChhhhHHHHH
Q 003668 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVK 303 (804)
Q Consensus 228 ~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslLK 303 (804)
.+||++|+.++.. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 3899999998876 5679999999999999999999999999999999999999999986432 34679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhc
Q 003668 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (804)
Q Consensus 304 ~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~Fg 382 (804)
.|||+||+||||.++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|++|++.|+||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILS-TLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888 889999999886 999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 383 PtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
|+|||.+... ..+....++++|++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999987310 1234567889999999975
No 14
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.8e-38 Score=323.11 Aligned_cols=188 Identities=17% Similarity=0.296 Sum_probs=164.7
Q ss_pred cccchhHhhhcCC------------CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCh
Q 003668 230 IGRPILLALEDVD------------GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDA 295 (804)
Q Consensus 230 FGvpLe~ll~~~~------------~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~ 295 (804)
||+||+.++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998732 4899999999999999999999999999999999999999997532 2345789
Q ss_pred hhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcc-----c
Q 003668 296 HIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----Q 369 (804)
Q Consensus 296 h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~-----~ 369 (804)
|+||++||.|||+||+||||.++|+.|+.+.+..+ +.++..++.++. +||+.|+.+|++|+.||+.|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~-~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYC-LLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888 788888888775 9999999999999999999998775 5
Q ss_pred CCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 370 NRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 370 NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
|+||+.|||+||||+|||++... ...+......+.+|++||+||+.||.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~------------------~~~~~~~~~~~~vv~~LI~n~~~if~ 208 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDN------------------PNTGDEYFLAIEAVNYLIENNEEFCE 208 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCC------------------cchHHHHHHHHHHHHHHHHhHHHHhc
Confidence 99999999999999999997311 01112334567899999999999997
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=318.04 Aligned_cols=189 Identities=21% Similarity=0.342 Sum_probs=168.1
Q ss_pred ccccchhHhhhc--CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC----CCCCChhhhHHHH
Q 003668 229 VIGRPILLALED--VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF----SPEEDAHIIADCV 302 (804)
Q Consensus 229 vFGvpLe~ll~~--~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~d~h~vAslL 302 (804)
+||+||+..+.. +..||.+|.+|+.+|+.+|+++|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 599999987654 3579999999999999999999999999999999999999999986432 2346899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
|.|||+||+||||.++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIH-SLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF 435 (804)
||+|+|++.. + +..........+.+|+.||+||++||
T Consensus 160 aP~l~r~~~~------~-----------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDD------N-----------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCC------C-----------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 9999999731 1 11233345667899999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.7e-38 Score=318.42 Aligned_cols=190 Identities=24% Similarity=0.391 Sum_probs=169.0
Q ss_pred CCCccccchhHhhhcC---CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCC-CChhhhHHH
Q 003668 226 KFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-EDAHIIADC 301 (804)
Q Consensus 226 k~~vFGvpLe~ll~~~---~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~d~h~vAsl 301 (804)
++.+||+||+.++.+. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....... .|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5789999999988763 579999999999999999999999999999999999999999986433333 499999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
||.|||+||+||+|.++|+.|+.+.+.+...++..++.++. +||+.|+.+|.+|+.||++|+.|++.|+|++.|||+||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~-~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf 160 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQ-TLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence 99999999999999999999999876655778899999886 89999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF 435 (804)
||+|||++.. . ........++.+|++||+||+.||
T Consensus 161 aP~l~~~~~~-------~------------~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 161 GPNLLWAKDA-------S------------MSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eccccCCCCc-------c------------cCHHHHHHHHHHHHHHHHhHHhhC
Confidence 9999998731 0 012345677889999999999998
No 17
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-37 Score=317.70 Aligned_cols=191 Identities=23% Similarity=0.296 Sum_probs=165.4
Q ss_pred ccccchhHhhhc----CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHH
Q 003668 229 VIGRPILLALED----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (804)
Q Consensus 229 vFGvpLe~ll~~----~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (804)
|||+||+.++.. +..||.+|.+|+.||++ |+++|||||++|+..+++++++.+|+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 56799999999999986 6999999999999999999999999987543 35689999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (804)
Q Consensus 305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP 383 (804)
|||+||+||+|+++|+.|+.+.+..+ .+++.+++.++. +||..|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTC-LLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988877 788888888775 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 384 tLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
+|||+... ...|.. .+......++.+|++||+||+.||.
T Consensus 158 ~L~~~~~~-------~~~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 158 NLFQSEEG-------GEKMSS-------STEKRLRLQAAVVQTLIDNASNIGI 196 (202)
T ss_pred eeecCCCc-------ccccch-------hHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 99998731 111110 1112345578899999999999996
No 18
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=317.58 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=162.9
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHh
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR 307 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLR 307 (804)
||+||+.++++ ++.||.+|.+|++||+++|+.+|||||++|+..++++|++.+++|.. ......++|+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999988876 67899999999999999999999999999999999999999999863 23346799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668 308 ELPSSPVPASCCNALLEARRTD------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~~------------~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~ 374 (804)
+||+||||+++|+.|+.+.+.. . .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLG-RLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999987531 1 468999999886 9999999999999999999999999999999
Q ss_pred chhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 375 ~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
.|||+||||+|||++... +. .+.++....+.+.+|++||+|
T Consensus 160 ~NLAivf~P~Ll~~~~~~------~~---------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGG------DV---------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCC------ch---------HHHHHhccchHHHHHHHHhhC
Confidence 999999999999997311 11 134455667888999999986
No 19
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.9e-37 Score=313.91 Aligned_cols=183 Identities=22% Similarity=0.326 Sum_probs=164.4
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhh
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRE 308 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLRe 308 (804)
||+||+.++.++..||.+|.+|++||+.+|+.+|||||++|+..+|+++++.+|.+. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999888878899999999999999999999999999999999999999999874 2334567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (804)
Q Consensus 309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr 387 (804)
||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||+.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVID-QLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998877 889999999885 99999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 003668 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLE 429 (804)
Q Consensus 388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIe 429 (804)
++.. . ++ +..++...+...+|++||-
T Consensus 160 ~p~~-----~--------d~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDT-----T--------DP---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCC-----C--------CH---HHHHHHHhhccchhhhhcc
Confidence 8731 1 11 3455667788889999874
No 20
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-37 Score=312.93 Aligned_cols=184 Identities=25% Similarity=0.398 Sum_probs=165.0
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC----CCCChhhhHHHH
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS----PEEDAHIIADCV 302 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~----~~~d~h~vAslL 302 (804)
||+||+.++.. +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|.. ... ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999998875 56799999999999999999999999999999999999999999852 211 245999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
|.|||+||+||+|.++|+.|+.+.+..+ ..++..++.++. +||..|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLIN-DLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999998887 889999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF 435 (804)
||+|||++.. + +......+.++++||+||+.||
T Consensus 160 ~P~l~~~~~~------~---------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPD------N---------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCcc------c---------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 9999998731 0 1223456789999999999998
No 21
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-37 Score=315.38 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=162.1
Q ss_pred CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (804)
Q Consensus 241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~ 319 (804)
+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|.. .+....|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 45799999999999999999999999999999999999999999863 44556799999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcc-----------cCCCCcchhhhhhcccccCC
Q 003668 320 NALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----------QNRMSTSAVAACMAPLLLRP 388 (804)
Q Consensus 320 ~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~-----------~NkMt~~NLAv~FgPtLlrp 388 (804)
+.|+.+.....++++..++.+|. +||+.|+.+|+||+.||++|+.|++ .|+||+.|||+||||+|||+
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~ 164 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIY-LLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHK 164 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCC
Confidence 99999988766788999999886 9999999999999999999999986 79999999999999999999
Q ss_pred CCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668 389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 389 ~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (804)
+..+..+.++ ....+......+.||++||+||+.||...
T Consensus 165 ~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 165 QKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCC
Confidence 8432221111 12334455677889999999999999743
No 22
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.8e-37 Score=309.65 Aligned_cols=160 Identities=26% Similarity=0.485 Sum_probs=150.3
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC-CCCCChhhhHHHHHHHHh
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF-SPEEDAHIIADCVKYVIR 307 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~d~h~vAslLK~fLR 307 (804)
||+||+.++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.++.|.. ++ ..+.|+|+||++||+|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999999999999999999753 33 235689999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccccc
Q 003668 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLl 386 (804)
+||+||+|+++|+.|+++.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLK-KFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999998877 889999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003668 387 RPLL 390 (804)
Q Consensus 387 rp~~ 390 (804)
||+.
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 23
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.7e-37 Score=319.16 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=160.6
Q ss_pred ccccchhHhhhcC----------------CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC----CC
Q 003668 229 VIGRPILLALEDV----------------DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TE 288 (804)
Q Consensus 229 vFGvpLe~ll~~~----------------~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~ 288 (804)
||||+|+..+... ..||.+|.+|+.||+++|+++|||||++|+..++++|++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999877542 258999999999999999999999999999999999999999863 22
Q ss_pred CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------Cc-hHHHHHHHHHHHhcCChhHH
Q 003668 289 FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-----------------DR-GSRVSAMRTAILETFPEPNR 350 (804)
Q Consensus 289 ~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~-----------------~~-~~ri~~i~~lI~~~LP~~Nr 350 (804)
....+++|+||++||.|||+||+||||+++|+.|+.++.. .+ .+++..++.+|. +||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLIT-RLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHH-HCCHHHH
Confidence 2356799999999999999999999999999999987642 23 688999999886 9999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 351 KLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 351 ~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
.+|+||+.||++|++|++.||||+.|||+||||+||+++. .+ | . .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~-------~~--~---------~-~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPD-------HE--M---------D-PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCc-------cc--c---------C-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999872 11 1 0 11234567899999999
Q ss_pred ccccc
Q 003668 431 YDKIF 435 (804)
Q Consensus 431 y~~IF 435 (804)
++++.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99873
No 24
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=7.5e-37 Score=313.61 Aligned_cols=186 Identities=22% Similarity=0.325 Sum_probs=162.2
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHh
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR 307 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLR 307 (804)
||+||+.++.+ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.+++|.. ......++|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999998876 67899999999999999999999999999999999999999999863 23446799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCC
Q 003668 308 ELPSSPVPASCCNALLEARRTD--------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM 372 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~~--------------~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkM 372 (804)
+||+||||+++|+.|+.+++.. + ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLR-QLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987531 1 357889999886 99999999999999999999999999999
Q ss_pred CcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 373 t~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
++.|||+||||+|||++... .+ . .+.+.....+++.||++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~-----~~--------~-~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGD-----AD--------V-SLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCC-----cc--------h-hHHHHHhhhhhHHHHHHHhhC
Confidence 99999999999999998411 00 0 133445667888999999986
No 25
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2e-36 Score=306.51 Aligned_cols=184 Identities=26% Similarity=0.373 Sum_probs=166.4
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhh
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRE 308 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLRe 308 (804)
||+||+.++.++..||.+|.+|++||+.+|+++|||||++|+..+++++++.+|+|. ......+++|+||++||+|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 2234567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccC
Q 003668 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (804)
Q Consensus 309 LPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlr 387 (804)
||+||||+++|+.|+.++...+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVLE-QLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998887 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 388 p~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
++.. .+. ..+.....+...+|++||+.
T Consensus 160 ~~~~-------------~~~---~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDT-------------ADP---LQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCC-------------CCH---HHHHHHHHHHHHHHHHHhhC
Confidence 8731 111 23566778889999999974
No 26
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-36 Score=312.81 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=158.8
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHh
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR 307 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLR 307 (804)
||+||+.++.+ +++||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|... .....|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999988876 568999999999999999999999999999999999999999998632 2346799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-----------------------hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 003668 308 ELPSSPVPASCCNALLEARRTDR-----------------------GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVA 364 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~~~-----------------------~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~ 364 (804)
+||+||||+++|+.|+.+++... ..++.+++.+|. +||+.|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLR-QLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875210 123668888886 999999999999999999999
Q ss_pred hhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 365 SSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 365 ~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
+|++.|+||+.|||+||||+||||+.. +..+ + +..+.....+..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~-------~~~~----~---~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPT-------DATV----S---LSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCC-------Ccch----h---HHHHhhhhhHHHHHHHHhhC
Confidence 999999999999999999999999731 1100 0 22344567788999999974
No 27
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-36 Score=309.07 Aligned_cols=176 Identities=22% Similarity=0.401 Sum_probs=160.5
Q ss_pred ccccchhHhhhc------CCCCcHHHHHHHHHHHHcC-CccCCeeecCCCHHHHHHHHHHHhcCCC-CC---CCCCChhh
Q 003668 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKT-EF---SPEEDAHI 297 (804)
Q Consensus 229 vFGvpLe~ll~~------~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~---~~~~d~h~ 297 (804)
|||+||+.++.. +..||.+|.+|++||+++| +.+|||||++|+..+++++++.++.|.. .+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999988865 3479999999999999987 7999999999999999999999999842 22 23579999
Q ss_pred hHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 003668 298 IADCVKYVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTS 375 (804)
Q Consensus 298 vAslLK~fLReLPePLlp~~l~~~~l~a~~~~-~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~ 375 (804)
||++||.|||+||+||+|.++|+.|+.+.+.. + .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVS-QLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 5 889999999885 89999999999999999999999999999999
Q ss_pred hhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 376 AVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 376 NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
|||+||||+|++|. .|+..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 2899999999999985
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=4.2e-36 Score=306.43 Aligned_cols=160 Identities=24% Similarity=0.361 Sum_probs=148.8
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCChhhhHHHHHHH
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYV 305 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~f 305 (804)
||+||+.++.+ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 99999988876 446999999999999999999999999999999999999999987432 23467999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccc
Q 003668 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (804)
Q Consensus 306 LReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPt 384 (804)
||+||+||||+++|+.|+.+.+..+ ..++.+++.++. +||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLL-SLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888 888999999885 99999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003668 385 LLRPLL 390 (804)
Q Consensus 385 Llrp~~ 390 (804)
|||++.
T Consensus 160 Llr~~~ 165 (196)
T cd04387 160 LLRPSE 165 (196)
T ss_pred cCCCCc
Confidence 999985
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=4.1e-36 Score=304.87 Aligned_cols=183 Identities=23% Similarity=0.400 Sum_probs=163.0
Q ss_pred CccccchhHhhhc---CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHH
Q 003668 228 PVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVK 303 (804)
Q Consensus 228 ~vFGvpLe~ll~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK 303 (804)
++||+||+.++.+ +++||.+|..|++||+++|+.+|||||++|+...++++++.+++|.. .+....|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999998876 45799999999999999999999999999999999999999999964 3445589999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 003668 304 YVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (804)
Q Consensus 304 ~fLReLPePLlp~~l~~~~l~a~~~~-~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~F 381 (804)
+|||+||+||+|.++|+.|+.+++.. + .+++..++.+|. +||+.|+.+|.+|+.||+.|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~-~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ-QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987655 3 778899999885 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 382 gPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
||+|||.+.. .........++.|++.||+|
T Consensus 160 ~P~l~~~~~~-------------------~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD-------------------VEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC-------------------cccHHHHHHHHHHHHHHhcC
Confidence 9999998731 01223456788899999987
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-35 Score=305.47 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=159.4
Q ss_pred cccchhHhhhc---CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCChhhhHHHH
Q 003668 230 IGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHIIADCV 302 (804)
Q Consensus 230 FGvpLe~ll~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~vAslL 302 (804)
||+||+.++.+ +..||.+|.+|++||+.+|+.+|||||++|+..++++|++.++++.. ++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 99999999976 34699999999999999999999999999999999999999998742 222 234899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~----~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 378 (804)
|.|||+||+||||+++|+.|+.++.... ..+...++.+|. +||..|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~-~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIID-CLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999886533 345667888775 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCccc-cccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 003668 379 ACMAPLLLRPLLAGECE-IETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (804)
Q Consensus 379 v~FgPtLlrp~~~~~~~-~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny 431 (804)
+||||+||+++...... +.....|....+ ....+...++++||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence 99999999998543211 111122222222 23345667899999865
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-35 Score=305.35 Aligned_cols=183 Identities=24% Similarity=0.365 Sum_probs=154.7
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC-CCCChhhhHHHHHHHHh
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS-PEEDAHIIADCVKYVIR 307 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vAslLK~fLR 307 (804)
||.||.+ ++++ +|.+||+||++ |+.+|||||++|+..++++|++.+++|... +. ..+++|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888743 2333 89999999998 999999999999999999999999998643 32 35699999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhc------------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668 308 ELPSSPVPASCCNALLEARRT------------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~------------~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~ 374 (804)
+||+||||.++|+.|+.+.+. .+ +.++.+++.++. +||+.|+.+|+||+.||+.|+.|++.|+||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 999999999999999887642 23 567888988775 9999999999999999999999999999999
Q ss_pred chhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 375 ~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
.|||+||||+||||+.. + ...+ .....+++.||++||+||+.||+.
T Consensus 153 ~NLAivf~P~Ll~~~~~------~--------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~ 198 (208)
T cd04392 153 DNLALLFTPHLICPRNL------T--------PEDL---HENAQKLNSIVTFMIKHSQKLFKA 198 (208)
T ss_pred HHHHHHhCcccCCCCCC------C--------HHHH---HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998621 1 1111 123456789999999999999974
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-35 Score=297.88 Aligned_cols=179 Identities=22% Similarity=0.383 Sum_probs=161.2
Q ss_pred ccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCChhhhHHHHHHHHh
Q 003668 231 GRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYVIR 307 (804)
Q Consensus 231 GvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~fLR 307 (804)
|.+|+.....+.+||.+|.+|+.||+.+|+.+|||||++|+..++++|++.++.+... .....|+|+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7778777777789999999999999999999999999999999999999999886422 2356799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhccccc
Q 003668 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (804)
Q Consensus 308 eLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLl 386 (804)
+||+||||+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIR-RLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999998888 899999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 003668 387 RPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (804)
Q Consensus 387 rp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny 431 (804)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 1123456788999999998
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.1e-35 Score=297.20 Aligned_cols=177 Identities=22% Similarity=0.331 Sum_probs=157.0
Q ss_pred CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (804)
Q Consensus 241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~ 319 (804)
...||.+|.+|++||+++|+.+|||||++|+..+|+++++.+++|.. ......|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 45799999999999999999999999999999999999999998853 23445699999999999999999999999999
Q ss_pred HHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccc
Q 003668 320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET 398 (804)
Q Consensus 320 ~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~ 398 (804)
+.|+++.+..+ +.++..++.+|. +||+.|+.+|+||+.||++|+. ++.|+||+.|||+||||+||+++.. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~------~ 165 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAIS-ELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVP------N 165 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCC------C
Confidence 99999999888 888999999886 9999999999999999999999 9999999999999999999998631 1
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003668 399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434 (804)
Q Consensus 399 d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~I 434 (804)
.+ .+.++..+..++.+|+.||++-+..
T Consensus 166 ------~~---~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 166 ------PD---PMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ------cc---HHHHHHHhHHHHHHHHHHHhCCccc
Confidence 01 1345566777889999999987654
No 34
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-35 Score=299.62 Aligned_cols=169 Identities=24% Similarity=0.410 Sum_probs=150.3
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHH-HhcC-----CCCCCC-CCChhhhHHHHHHHHhhCCCCCCC
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQG-----KTEFSP-EEDAHIIADCVKYVIRELPSSPVP 315 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~d~h~vAslLK~fLReLPePLlp 315 (804)
..|.||.+||+||+.+|+.+|||||++|+..+|++++.. ++.+ ..++.. .+|+|+||++||+|||+||+||||
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 467799999999999999999999999999999999876 5654 233333 579999999999999999999999
Q ss_pred hhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcc
Q 003668 316 ASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGEC 394 (804)
Q Consensus 316 ~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~ 394 (804)
+++|+.|+.+++..+ +.|+..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~---- 181 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVH-KLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE---- 181 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCC----
Confidence 999999999999888 899999999886 99999999999999999999999999999999999999999999973
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 395 EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 395 ~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
++ ++++......+.||++||+|
T Consensus 182 --~~------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 182 --ET------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred --cc------------HHHHHHhHHHHHHhhhHhcC
Confidence 11 23455677788899999987
No 35
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.4e-36 Score=349.05 Aligned_cols=334 Identities=17% Similarity=0.213 Sum_probs=243.7
Q ss_pred eEEEeeeEee----cCC----CCCCCCceEEEEEeCCeeEEecCCCCCCCCC----------CcceeeecCCeeecCCcc
Q 003668 84 VFKSGPLFIS----SKG----IGWTSWKKRWFILTHTSLVFFRSDPSAIPQK----------GSEVNLTLGGIDLNNSGS 145 (804)
Q Consensus 84 v~KEGyL~~~----kKg----~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~----------g~e~~~~L~~~~l~~s~s 145 (804)
..|+||||+. ++| ...+.|+.-|.+|.++.|+.|++.....+.. ...-.+.+.+|.+.-.-
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y- 1001 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY- 1001 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh-
Confidence 5799999972 333 3678999999999999999999876532211 01122334444332210
Q ss_pred eeeecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhccCCCCCCCCcc-------------ccc--------
Q 003668 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQ-------------NGI-------- 204 (804)
Q Consensus 146 V~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~~~~~~~~-------------~~i-------- 204 (804)
-...++..|.++. .+-..++|||++.++|-.|+..++.......-...|++. +++
T Consensus 1002 --setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~ 1077 (1973)
T KOG4407|consen 1002 --SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTV 1077 (1973)
T ss_pred --hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCC
Confidence 0123444455543 334679999999999999999998655321100001000 000
Q ss_pred -------------cccchhhhcc------------------Cchhhhccc-CC-----------------------CCCc
Q 003668 205 -------------LKNDKAEAAN------------------GSVEQLKEK-PV-----------------------KFPV 229 (804)
Q Consensus 205 -------------f~~~~~~~~~------------------~s~~~~~~k-~~-----------------------k~~v 229 (804)
|+......+. -+...||+- +. +-++
T Consensus 1078 ~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~ 1157 (1973)
T KOG4407|consen 1078 PSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPV 1157 (1973)
T ss_pred cchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcc
Confidence 0000000000 011123221 11 2348
Q ss_pred cccchhHhhh--cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC------CCCCCCChhhhHHH
Q 003668 230 IGRPILLALE--DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIADC 301 (804)
Q Consensus 230 FGvpLe~ll~--~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~d~h~vAsl 301 (804)
|||+|...-- -++-||.+|..|+..+|.+|+.+.|||||+|+...|..|++.++++.. ..+.+.|+++|.+|
T Consensus 1158 ~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSL 1237 (1973)
T KOG4407|consen 1158 LGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSL 1237 (1973)
T ss_pred cccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHH
Confidence 9999964321 145699999999999999999999999999999999999999999832 22346699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (804)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~ 380 (804)
||.|||.||+||||..+|..||++-+..+ -+|+..|+.||. .||+.+|.+|++|+.||..|+.|+++|||-+.||||+
T Consensus 1238 LK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~-~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1238 LKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLR-KLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred HHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence 99999999999999999999999999988 899999999886 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 003668 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (804)
Q Consensus 381 FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (804)
|||+|+|+++ + .|..++.....++.||++||.+|+++|.+...
T Consensus 1317 FGPsiVRts~-------D----------nm~tmVthM~dQckIVEtLI~~~dwfF~esg~ 1359 (1973)
T KOG4407|consen 1317 FGPSIVRTSD-------D----------NMATMVTHMSDQCKIVETLIHYNDWFFDESGT 1359 (1973)
T ss_pred eccceeccCC-------c----------cHHHHhhcchhhhhHHHHHHhhhhheeccCCC
Confidence 9999999973 2 12345566778899999999999999987433
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7e-35 Score=295.44 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=152.9
Q ss_pred cccchhHhhhc------CCCCcHHHHHHHHHHHH-cCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHH
Q 003668 230 IGRPILLALED------VDGTPSFLEKAIRFIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCV 302 (804)
Q Consensus 230 FGvpLe~ll~~------~~~VP~~l~~~i~~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslL 302 (804)
||+||++++.+ +..||.+|..|+++|.+ +|+++|||||++|+..+++++++.+|+|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 99999999854 23599999999999865 799999999999999999999999999987666667999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhc--ccCCCCcchhhhh
Q 003668 303 KYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSK--NQNRMSTSAVAAC 380 (804)
Q Consensus 303 K~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s--~~NkMt~~NLAv~ 380 (804)
|.|||+||+||+|.++|+.++.+.. ....++.+|. +||+.|+.+|.||+.||+.|++++ +.||||+.|||+|
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~-----~~~~~~~li~-~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv 154 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASE-----DPDKAVEIVQ-KLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV 154 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhc-----CHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 9999999999999999999998643 1234666675 999999999999999999999755 7899999999999
Q ss_pred hcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 381 FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
|||+|||++. ++ . ........+.+.+|+.||+|
T Consensus 155 f~P~l~~~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 155 FAPNILRCTS------DD--------P---RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HccccCCCCC------CC--------H---HHHHHccHHHHHHHHHHhcC
Confidence 9999999873 22 1 22344566788999999987
No 37
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.1e-35 Score=300.78 Aligned_cols=188 Identities=14% Similarity=0.257 Sum_probs=160.2
Q ss_pred cccchhHhhhc-CCCCcHHHHHHHHHHHHcC--CccC----CeeecCCCHHHHHHHHHHHhcCCCCC-----CCCCChhh
Q 003668 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHG--VQVE----GILRQAAYVDDVHRRIREFEQGKTEF-----SPEEDAHI 297 (804)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~l~~~i~~Le~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~d~h~ 297 (804)
||+||+.++.. +..||.+|.+|++||+.+| +..+ ||||++|+.+.+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 99999988876 4579999999999999975 3333 99999999999999999999985322 34679999
Q ss_pred hHHHHHHHHhhCCCCCCChhhHHHHHHHHhc------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccC
Q 003668 298 IADCVKYVIRELPSSPVPASCCNALLEARRT------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN 370 (804)
Q Consensus 298 vAslLK~fLReLPePLlp~~l~~~~l~a~~~------~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~N 370 (804)
||++||.|||+||+||||+++|+.|+++... .+ ++|+.+++.++. +||..|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~-~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLS-QLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 34 899999999886 999999999999999999999987666
Q ss_pred ---CCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 371 ---RMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 371 ---kMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
+|++.|||+||||+|+||... ... .....+++.+|++||+||++||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~------~~~-------------~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIE------SLL-------------TIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcc------ccc-------------ccccHHHHHHHHHHHHhHHHhccc
Confidence 699999999999999998731 110 012356678999999999999985
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=2.7e-34 Score=292.80 Aligned_cols=174 Identities=20% Similarity=0.276 Sum_probs=147.9
Q ss_pred hHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHHhhCCCCC
Q 003668 235 LLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRELPSSP 313 (804)
Q Consensus 235 e~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLReLPePL 313 (804)
.+.+...+.+|.+|.+||++|+++|+++|||||++|+.. +.++++.++.+. ......+|+|+||++||.|||+||+||
T Consensus 6 ~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePL 84 (200)
T cd04388 6 TEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPV 84 (200)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCcc
Confidence 334444578999999999999999999999999999865 788999999853 223346899999999999999999999
Q ss_pred CChhhHHHHHHHHhc-Cc-hHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCC
Q 003668 314 VPASCCNALLEARRT-DR-GSRVSAMRTAIL-ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (804)
Q Consensus 314 lp~~l~~~~l~a~~~-~~-~~ri~~i~~lI~-~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~ 390 (804)
||+++|+.|+.+++. .+ ++++..++.+|. ..||..|+.+|+|||.||++|++|+..|+||+.|||+||||+|||++.
T Consensus 85 ip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~ 164 (200)
T cd04388 85 IPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQP 164 (200)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCc
Confidence 999999999998854 44 788999998773 279999999999999999999999999999999999999999999973
Q ss_pred CCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 391 AGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 391 ~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
. . .....+...+|++||.+
T Consensus 165 ~------~---------------~~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 165 A------S---------------SDSPEFHIRIIEVLITS 183 (200)
T ss_pred c------c---------------ccchhhHHHHHHHHHHH
Confidence 1 1 01234667899999985
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-31 Score=303.12 Aligned_cols=318 Identities=21% Similarity=0.297 Sum_probs=231.6
Q ss_pred CCCceEEEEEeCCeeEEecCCCCCCCCC---CcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchh
Q 003668 100 TSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLE 176 (804)
Q Consensus 100 ksWkKRWfVL~~~sL~yYKd~~~~~p~~---g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSee 176 (804)
.-|...|..++++.+.||.+.+.+.... .+.-.....+..+..+.....+...+..+.+......+..|+++-.++.
T Consensus 271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net 350 (650)
T KOG1450|consen 271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNET 350 (650)
T ss_pred cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCCc
Confidence 4599999999999999998876443221 0111111111111111100011112222344555556778999999999
Q ss_pred hHHHHHHHHHHHhccCCCCCCC--Cccc---------------------------ccccc----chhh------------
Q 003668 177 DLYDWKTALENALAQAPSTGSA--TGQN---------------------------GILKN----DKAE------------ 211 (804)
Q Consensus 177 E~~eWI~AI~~ai~~aP~~~~~--~~~~---------------------------~if~~----~~~~------------ 211 (804)
....|..+....+...++.+.+ .|.. ++... .++.
T Consensus 351 ~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~~ 430 (650)
T KOG1450|consen 351 SFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQK 430 (650)
T ss_pred cccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchHH
Confidence 9999999999887533331110 0100 00000 0000
Q ss_pred ------hccCchhhhccc--CCCCCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHH
Q 003668 212 ------AANGSVEQLKEK--PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREF 282 (804)
Q Consensus 212 ------~~~~s~~~~~~k--~~k~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~l 282 (804)
+..+-.+..+++ +.+..|||++|+.+|.+ .+.||.+|.+|+..|+.+|++.+||||++|+...|++|+..+
T Consensus 431 ~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~ 510 (650)
T KOG1450|consen 431 KLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQS 510 (650)
T ss_pred HHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhc
Confidence 000011112233 44589999999999876 567999999999999999999999999999999999999999
Q ss_pred hcCC-CCCC--CCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003668 283 EQGK-TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILM 358 (804)
Q Consensus 283 d~g~-~~~~--~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~ 358 (804)
|... ..+. .+.|+|+|+++||.|||+||+||+|..++..|..+..... ..|...++.+|. .||..|+.||+||+.
T Consensus 511 d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~-~lP~~n~~Tlr~lv~ 589 (650)
T KOG1450|consen 511 DQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIG-LLPDANYQTLRYLVR 589 (650)
T ss_pred CccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHh-hCCCcchhHHHHHHH
Confidence 9542 2332 3469999999999999999999999999999999999988 899999999986 999999999999999
Q ss_pred HHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 359 MMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 359 ~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
||++|..|++.|+|+.+||||||||+|+.+.. ++ -..+.....+++||+.||+++..+|+
T Consensus 590 HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~------~~------------~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 590 HLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQ------ET------------SSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHhccccccccccceEEEeccccccccc------cc------------cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999752 21 01234566788999999999999996
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=1.4e-30 Score=259.58 Aligned_cols=169 Identities=29% Similarity=0.476 Sum_probs=153.9
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHhhCCCCCCChhhHH
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSSPVPASCCN 320 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPePLlp~~l~~ 320 (804)
.||.+|..|+.||+++|++++||||++|+..+++++++.++.|.... ...+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999986543 5678999999999999999999999999999
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccc
Q 003668 321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399 (804)
Q Consensus 321 ~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d 399 (804)
.|+.+++..+ .+++..++.++. +||..|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELIS-LLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998777 889999999886 9999999999999999999999999999999999999999999997311
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 400 ~~~~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
........+.+.+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 11345667889999999987
No 41
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=6.2e-29 Score=283.31 Aligned_cols=197 Identities=21% Similarity=0.253 Sum_probs=167.8
Q ss_pred CCCCccccchhHhhhc----CCCCcHHHHHHHH-HHHH-cCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhh
Q 003668 225 VKFPVIGRPILLALED----VDGTPSFLEKAIR-FIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHII 298 (804)
Q Consensus 225 ~k~~vFGvpLe~ll~~----~~~VP~~l~~~i~-~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~v 298 (804)
....||||++..+... ++.||.++..+.. .|+. .|++.|||||++|...+++.+++.||.|.+......|||+|
T Consensus 142 ~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~ 221 (577)
T KOG4270|consen 142 ASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCL 221 (577)
T ss_pred chhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHH
Confidence 3467999999866654 4447999988888 6655 78999999999999999999999999996443336899999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 003668 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (804)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NL 377 (804)
|++||.|||+||+|+|++.+|++|+.++...+ +++...++.++. +||+.|+.+|+|+|.||+.|+++++.||||++||
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~-~LPp~n~slL~yli~flA~v~~~~~vNKMs~~Nl 300 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQ-KLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNL 300 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHHHhhhcccchhhc
Confidence 99999999999999999999999999988888 899999999775 9999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003668 378 AACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (804)
Q Consensus 378 Av~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (804)
||||||+|+|+.. ....++.++...+.+..+|+.+|+++++.|..
T Consensus 301 AiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g 345 (577)
T KOG4270|consen 301 AIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPG 345 (577)
T ss_pred eeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 9999999999972 11234455555566666777777788877763
No 42
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-30 Score=285.46 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=171.8
Q ss_pred CCCccccchhHhhhc-CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCChhhhHHH
Q 003668 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIADC 301 (804)
Q Consensus 226 k~~vFGvpLe~ll~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vAsl 301 (804)
.+.||||||..++++ +-.+|.+|.+++.||+++|++++||||++|..++|+.|++.++..-. ..++....|++|.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 489999999988886 55699999999999999999999999999999999999999886421 22345578999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (804)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~ 380 (804)
||+|||+||+||||.++.+.|+.+++... .+|+.+++.+|+ .||.+||.+|+.|+.||++|+.+.++|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 99999999999999999999999999999 999999999999 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcc---ccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 381 MAPLLLRPLLAGEC---EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 381 FgPtLlrp~~~~~~---~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
|||+||.......- .+-......|.... .....+.-+..++..||.++..+|.
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~---kel~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQ---KELNEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCch---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999986532110 00000000111111 1123344567799999999999996
No 43
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=4.4e-30 Score=292.66 Aligned_cols=266 Identities=22% Similarity=0.343 Sum_probs=213.3
Q ss_pred CCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhH
Q 003668 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (804)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~ 178 (804)
.-.|.+-||.+.+.+|++.-..... .+ .-..|+...-....+......|+-.|+++.. ||++|+|..+.-+.
T Consensus 628 ~~~~r~gwfsl~gssl~~~~~~~~v---e~--d~~hlrrlqElsi~s~~~n~~K~~~l~lve~---grTLYI~g~~rldf 699 (1186)
T KOG1117|consen 628 LDQARKGWFSLDGSSLHFCLQMQPV---EE--DRMHLRRLQELSISSMVQNGEKLDVLVLVEK---GRTLYIQGETRLDF 699 (1186)
T ss_pred hhhccccceecCCCeeEEecCCCcC---ch--hHHHHHHHHHHhhhhccCCcccccceEEEee---ccEEEEecCCcchH
Confidence 4569999999999999887643211 11 1011221110011111233457777888776 99999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCccccccccchhhhccCchhhhcccCCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHc
Q 003668 179 YDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEH 258 (804)
Q Consensus 179 ~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~k~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~ 258 (804)
..|..||.++.+. + |.-|+++.-..+.||.||..||.|+.++
T Consensus 700 t~W~~AIekaa~~-~-------------------------------------gt~LqeqqLs~~dIPvIVd~CI~FVTqy 741 (1186)
T KOG1117|consen 700 TVWHTAIEKAAGT-D-------------------------------------GTALQEQQLSKNDIPVIVDSCIAFVTQY 741 (1186)
T ss_pred HHHHHHHHHHhcC-C-------------------------------------cchhhhhhccCCCCcEehHHHHHHHHHh
Confidence 9999999998842 1 1112222333567999999999999999
Q ss_pred CCccCCeeecCCCHHHHHHHHHHHhcCCCC--C-CCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHH
Q 003668 259 GVQVEGILRQAAYVDDVHRRIREFEQGKTE--F-SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRV 334 (804)
Q Consensus 259 Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~-~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri 334 (804)
|+..|||||.+|...++.+|.+.|-+.... + ..+.-+.+|+++||+|||+|++||+|.++|..|++++...+ ++|+
T Consensus 742 Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~ 821 (1186)
T KOG1117|consen 742 GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERI 821 (1186)
T ss_pred CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHH
Confidence 999999999999999999999999876422 2 23557899999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHH
Q 003668 335 SAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAA 414 (804)
Q Consensus 335 ~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~ 414 (804)
.....+|. .||..||.||+.||.||++|..+++.|+|+++|||.||||+||... |.
T Consensus 822 ~rY~~lI~-~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTd--------------gq--------- 877 (1186)
T KOG1117|consen 822 KRYGALIR-SLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTD--------------GQ--------- 877 (1186)
T ss_pred HHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecC--------------CC---------
Confidence 99999997 9999999999999999999999999999999999999999999864 11
Q ss_pred HHHHHHHHHHHHHHhhcccccC
Q 003668 415 AAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 415 ~~~~~~~~IVe~LIeny~~IF~ 436 (804)
..+..+|++-||.+|..+|.
T Consensus 878 --dehevnVledLingYvvVF~ 897 (1186)
T KOG1117|consen 878 --DEHEVNVLEDLINGYVVVFE 897 (1186)
T ss_pred --chhhhhHHHHHhcCceEEEE
Confidence 12567799999999999997
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=2.4e-29 Score=261.16 Aligned_cols=142 Identities=17% Similarity=0.318 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeeecCCCHHH----HHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhh
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDD----VHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~----v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLReLPePLlp~~l 318 (804)
.||.+|.+|++||+++|+.+|||||++|+... ++++++.+|+|.... ...++|+||++||.|||+||+||||+++
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999986443 5689999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCC
Q 003668 319 CNALLEARRTDRGSRVSAMRTAILE-TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (804)
Q Consensus 319 ~~~~l~a~~~~~~~ri~~i~~lI~~-~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~ 390 (804)
|+.|+.+.... . ..++.+| + +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 128 y~~~~~~~~~~-~---~~~~~ll-~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVANN-E---EDKRQVI-RISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcCc-H---HHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 99999987222 2 2344434 5 89999999999999999999999999999999999999999999983
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=7.1e-29 Score=244.42 Aligned_cols=167 Identities=26% Similarity=0.489 Sum_probs=151.2
Q ss_pred cHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHH
Q 003668 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (804)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l 323 (804)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... ....+|+|++|++||.|||+||+||||.++|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999998754 45678999999999999999999999999999999
Q ss_pred HHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccccccc
Q 003668 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (804)
Q Consensus 324 ~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~ 402 (804)
.++...+ ..++..++.++. +||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLK-SLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998877 889999999886 9999999999999999999999999999999999999999999987311
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 003668 403 GGDGSAQLLQAAAAANHAQAIVITLLEE 430 (804)
Q Consensus 403 ~g~~s~ql~~a~~~~~~~~~IVe~LIen 430 (804)
+........+..+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 12234556788899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-29 Score=288.75 Aligned_cols=183 Identities=22% Similarity=0.383 Sum_probs=161.6
Q ss_pred CCCCccccchhHhhh-----cCCCCcHHHHHHHHHHH-HcCCccCCeeecCCCHHHHHHHHHHHhcC-CCCC---CCCCC
Q 003668 225 VKFPVIGRPILLALE-----DVDGTPSFLEKAIRFIE-EHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEF---SPEED 294 (804)
Q Consensus 225 ~k~~vFGvpLe~ll~-----~~~~VP~~l~~~i~~Le-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~---~~~~d 294 (804)
..+.|||.||...+. +..++|.+|.+|++||+ .+|++.|||||++|+...|+.|++.||.+ +.++ ..+.|
T Consensus 895 ~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~d 974 (1112)
T KOG4269|consen 895 KQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMD 974 (1112)
T ss_pred eeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccccc
Confidence 358999977753332 24579999999999999 59999999999999999999999999998 3222 34679
Q ss_pred hhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCC
Q 003668 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMS 373 (804)
Q Consensus 295 ~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt 373 (804)
+|+|||+||+|||+||+|||+.++|..|.......+ ..+...+..+|. .||++|+.+|.+|+.||.+|+.++.+|||+
T Consensus 975 Vn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKMn 1053 (1112)
T KOG4269|consen 975 VNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKMN 1053 (1112)
T ss_pred HHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999998888 888899999886 899999999999999999999999999999
Q ss_pred cchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 003668 374 TSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (804)
Q Consensus 374 ~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (804)
++|||+||+|+|.+|.+ +...||-||+-||.+...
T Consensus 1054 lrNlciVFsPTLniPse--------------------------------~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1054 LRNLCIVFSPTLNIPSE--------------------------------IESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred ccceeeeecccccCcHH--------------------------------hhhhhccchhhhhccchH
Confidence 99999999999999862 456678889999986643
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=4.4e-28 Score=235.50 Aligned_cols=144 Identities=25% Similarity=0.515 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHH
Q 003668 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (804)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~ 322 (804)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... .....|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 5678899999999999999999999999999999
Q ss_pred HHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668 323 LEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (804)
Q Consensus 323 l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~ 389 (804)
+.+.+..+ .+++..++.++. +||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQ-SLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhhh-ccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888877 889999999886 9999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=2.8e-27 Score=255.59 Aligned_cols=196 Identities=23% Similarity=0.359 Sum_probs=172.3
Q ss_pred CCCCCccccchhHhhhc---CCCCcHHHHHHHHHHHHcC-CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCC-CChhhh
Q 003668 224 PVKFPVIGRPILLALED---VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-EDAHII 298 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~---~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~d~h~v 298 (804)
+.++.-||+||..+... +..+|.+|..|+.+|..+| +.+|||||.+++.+.+.++.+.+++|..+.... -++|..
T Consensus 248 pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~ 327 (467)
T KOG4406|consen 248 PLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAP 327 (467)
T ss_pred CCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhh
Confidence 67899999999877654 5679999999999999999 999999999999999999999999997444433 359999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhh
Q 003668 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (804)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 378 (804)
|.+||.|||+||+||++.++|..+......+...|...+.+++..+||+.|+.+|++++.||.+|++|+..|+||+.|||
T Consensus 328 avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa 407 (467)
T KOG4406|consen 328 AVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLA 407 (467)
T ss_pred HHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccce
Confidence 99999999999999999999999888776666888999999998679999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 003668 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 379 v~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (804)
+||||+|+|+... +. .+...+..+.++++||+||..+|...
T Consensus 408 ~vfGpnl~w~~~~---------------s~----tl~q~npin~F~~~li~~~~~~f~~~ 448 (467)
T KOG4406|consen 408 VVFGPNLLWAQDE---------------SL----TLKQINPINKFTKFLIEHYKKLFTTP 448 (467)
T ss_pred eeecccccccccc---------------cc----cHHHhccHHHHHHHHHHhhhhccCCC
Confidence 9999999999731 11 12234567889999999999999743
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=1.1e-25 Score=248.26 Aligned_cols=183 Identities=20% Similarity=0.384 Sum_probs=158.1
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcC-----CCCCCCCCChhhhHHHHHHHHhhCCCCCCChh
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-----KTEFSPEEDAHIIADCVKYVIRELPSSPVPAS 317 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-----~~~~~~~~d~h~vAslLK~fLReLPePLlp~~ 317 (804)
.||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++ +...++.+++|+||++||.|||+||+||||.+
T Consensus 93 ~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~ 172 (412)
T KOG2710|consen 93 QIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLE 172 (412)
T ss_pred eCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHH
Confidence 4899999999999999999999999999999999999999998 34556678999999999999999999999999
Q ss_pred hHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccC-----------CCCcchhhhhhcccc
Q 003668 318 CCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN-----------RMSTSAVAACMAPLL 385 (804)
Q Consensus 318 l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~N-----------kMt~~NLAv~FgPtL 385 (804)
+|+.|+..++... .+++..++.++. .||..|+.+|.+|+.||+.|+.|++.| +|++.|||+||+|+|
T Consensus 173 LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~i 251 (412)
T KOG2710|consen 173 LYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNI 251 (412)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchh
Confidence 9999999999999 599999999886 999999999999999999999999999 999999999999999
Q ss_pred cCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 386 LRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 386 lrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
+...... ....++.+-+ .......+..++..||+||+.+|.
T Consensus 252 L~k~~~~----~~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 252 LYKLKGS----HKELSVTGVA------NESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred hhcccCC----Cccccccccc------chhhHHHHHHHHHHhhhhHHHhhc
Confidence 9953200 1112222111 112334566789999999999998
No 50
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=7.7e-24 Score=257.91 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=149.7
Q ss_pred ccccchhHhhh-cCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCChhhhHHHHHHHH
Q 003668 229 VIGRPILLALE-DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVI 306 (804)
Q Consensus 229 vFGvpLe~ll~-~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fL 306 (804)
+||+.|..++. ....||.++.+|+.+|+.+|+.++||||++|...+++.|...++.|. .......|+|+|+++||+||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999998887 56789999999999999999999999999999999999999999986 34455789999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCc-h------HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhh
Q 003668 307 RELPSSPVPASCCNALLEARRTDR-G------SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (804)
Q Consensus 307 ReLPePLlp~~l~~~~l~a~~~~~-~------~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv 379 (804)
|.||+|||++.+|+.|+.+.+... . +++..++.++. .||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLE-QLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHHH-hcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 999999999999999999999844 3 48999999875 999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 003668 380 CMAPLLLRPLL 390 (804)
Q Consensus 380 ~FgPtLlrp~~ 390 (804)
||||||||++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 51
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.5e-24 Score=244.18 Aligned_cols=238 Identities=17% Similarity=0.213 Sum_probs=207.3
Q ss_pred CCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHH
Q 003668 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK 303 (804)
+.++.+||.||..+|.+.+ +|..+..++-++...|.-++||||..++...+++|++.++.|..+-.....++++|.++|
T Consensus 77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~k 155 (741)
T KOG4724|consen 77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDK 155 (741)
T ss_pred CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhh
Confidence 4568899999999888776 999999999999999999999999999999999999999999766666779999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhc
Q 003668 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (804)
Q Consensus 304 ~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~Fg 382 (804)
.|||.+|.-+|..++|+.|+.+....+ ++++.+|+++. ++||+.|..+|++|+..| .|..++..|.|+..|||+|++
T Consensus 156 dflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~ 233 (741)
T KOG4724|consen 156 DFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVN 233 (741)
T ss_pred chhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhc
Confidence 999999999999999999999998888 99999999976 599999999999999999 899999999999999999999
Q ss_pred ccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCccccccccccCCCCCCCCCCC
Q 003668 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDD 462 (804)
Q Consensus 383 PtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~e~~~s~~~l~~ds~~~~~~sees~d~ 462 (804)
|++++++.....+.+.++ ++++.-+++|||+||-.||+++.... |+.+.......++.+|-
T Consensus 234 p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd~ 294 (741)
T KOG4724|consen 234 PIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSDL 294 (741)
T ss_pred chhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhhh
Confidence 999999854444333322 23455689999999999999875544 77766666667777777
Q ss_pred CCcCCCCCCCCCCCCCCCCCC
Q 003668 463 DESYEDDDQDGATPESDAYTD 483 (804)
Q Consensus 463 d~~~~d~~y~s~e~e~~~d~d 483 (804)
+....|..||+.+++.+.+.|
T Consensus 295 s~~q~Ds~yds~~~~~~~~~~ 315 (741)
T KOG4724|consen 295 SKGQVDSHYDSTHVLASILKE 315 (741)
T ss_pred ccccccccccccchhhhhhhh
Confidence 777779999999998776554
No 52
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=4e-23 Score=225.28 Aligned_cols=175 Identities=21% Similarity=0.338 Sum_probs=149.0
Q ss_pred CCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 003668 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (804)
Q Consensus 241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~ 319 (804)
...||.+|..|+..||.+|+..+||||++|....+++|++++-+|+. ......|+|+||++||.|||+|.+||||....
T Consensus 359 aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~ 438 (604)
T KOG3564|consen 359 APMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLR 438 (604)
T ss_pred cccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHH
Confidence 34589999999999999999999999999999999999999999974 33456799999999999999999999999999
Q ss_pred HHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCcccccc
Q 003668 320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET 398 (804)
Q Consensus 320 ~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~ 398 (804)
.+|+.|+...+ ..-+.++...|. .||..||.+|.|||-|+++|++ +..|+|++.|||.+|||+++--+.++
T Consensus 439 rdf~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~------ 510 (604)
T KOG3564|consen 439 RDFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPN------ 510 (604)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCC------
Confidence 99999999888 666777777787 7999999999999999999888 88999999999999999999865321
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003668 399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYD 432 (804)
Q Consensus 399 d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~ 432 (804)
.+. ..+...+.-+.++|+.|++--.
T Consensus 511 ------pd~---~~~l~dv~~q~rvmkaLlelp~ 535 (604)
T KOG3564|consen 511 ------PDQ---VTMLQDVKTQPRVMKALLELPL 535 (604)
T ss_pred ------ccH---hHHHHhhhhhHHHHHHHHhCCH
Confidence 111 2233445566777887776433
No 53
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.87 E-value=2.3e-22 Score=179.78 Aligned_cols=87 Identities=47% Similarity=0.614 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCC-CCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 003668 680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF-PIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 680 ~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l 758 (804)
|||++.+++|.+|||||.+||+|||+|+++|.|||.||+.+.|++ +++++||.+++++|.|||++|++|++||++|.+|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988 6779999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 003668 759 RVQLSEQL 766 (804)
Q Consensus 759 ~~~l~~~~ 766 (804)
+.+|.+||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-18 Score=201.58 Aligned_cols=158 Identities=23% Similarity=0.403 Sum_probs=145.7
Q ss_pred CCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhc-CCCCCCC-CCChhhhHHHHHH
Q 003668 227 FPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQ-GKTEFSP-EEDAHIIADCVKY 304 (804)
Q Consensus 227 ~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~-g~~~~~~-~~d~h~vAslLK~ 304 (804)
...||.||..+......||.++.+|+.||+..|+.++||||++|+..+...++.+|.+ +..++.. +..++++|+.+|.
T Consensus 915 s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlks 994 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKS 994 (1100)
T ss_pred hhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchh
Confidence 5689999988887788899999999999999999999999999999999999999876 3333332 4468999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcc
Q 003668 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (804)
Q Consensus 305 fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgP 383 (804)
||..||+||+|+.++..|.+++++.+ ..++..++..+. .||+.|+.+++|++.||.+|+.....|.||..||.|||+|
T Consensus 995 ffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a-~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~ 1073 (1100)
T KOG4271|consen 995 FFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASA-KLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPT 1073 (1100)
T ss_pred hhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhh-hcCchHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 99999999999999999999999999 899999999886 9999999999999999999999999999999999999999
Q ss_pred cc
Q 003668 384 LL 385 (804)
Q Consensus 384 tL 385 (804)
.|
T Consensus 1074 ~~ 1075 (1100)
T KOG4271|consen 1074 LL 1075 (1100)
T ss_pred hH
Confidence 88
No 55
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=6.8e-18 Score=177.05 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=140.5
Q ss_pred CCCCCccccchhHhhhcC-CCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCChhhh
Q 003668 224 PVKFPVIGRPILLALEDV-DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHII 298 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~-~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~v 298 (804)
|.-..|||.+|+.++++. ..-|.++.+|+..||++|++.-|+|+++|+..+-+.|++.|+.... .+. .-.|..+|
T Consensus 179 PrlrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 179 PRLRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 333569999999998774 4578899999999999999999999999999999999999987532 222 23488999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhc--Cc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q 003668 299 ADCVKYVIRELPSSPVPASCCNALLEARRT--DR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (804)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~l~a~~~--~~--~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~ 374 (804)
++++|.|||||||||++...|...++++.. ++ ..-...+-.+| +.||..++.+|..++.||..|..+++.|+||+
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~ii-dcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~ 337 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAII-DCLERELSKQLNVCLDHLSTVLCSSPHNGLTP 337 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHH-HHHHHHhhhhHhHHHhhhhHheecCCcCCcCH
Confidence 999999999999999999999888887642 22 33344555545 59999999999999999999999999999999
Q ss_pred chhhhhhcccccCCCC
Q 003668 375 SAVAACMAPLLLRPLL 390 (804)
Q Consensus 375 ~NLAv~FgPtLlrp~~ 390 (804)
..||.||||.||-...
T Consensus 338 ~~Ls~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 338 TRLSLIFAPLLFFCLD 353 (442)
T ss_pred HHHHHHhhhhHHHhhc
Confidence 9999999999988653
No 56
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.60 E-value=6.1e-15 Score=151.93 Aligned_cols=181 Identities=14% Similarity=0.219 Sum_probs=141.3
Q ss_pred CccccchhHh-hhcCCCCcHHHHHHH--HHHHHcCCcc--CCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCC-h----
Q 003668 228 PVIGRPILLA-LEDVDGTPSFLEKAI--RFIEEHGVQV--EGILRQAAYVDDVHRRIREFEQGKTE--FSPEED-A---- 295 (804)
Q Consensus 228 ~vFGvpLe~l-l~~~~~VP~~l~~~i--~~Le~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d-~---- 295 (804)
.+||+|+.+- ++.+...|..+.... +++..+.++. .|+||.++...-+...++.++..... ...... +
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 5899988644 444455677775555 5555554444 69999999999999999988875311 110111 1
Q ss_pred ------hhhHHHHHHHHhhCCCCCCChhhHHHHHHHHh---cCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHh
Q 003668 296 ------HIIADCVKYVIRELPSSPVPASCCNALLEARR---TDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVAS 365 (804)
Q Consensus 296 ------h~vAslLK~fLReLPePLlp~~l~~~~l~a~~---~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~ 365 (804)
.+|+.++++||++||+||+|..+|+.|+.++. ... +..+++++.++. .||+.||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 27999999999999999999999998888876 334 889999999888 9999999999999999999999
Q ss_pred hc-------ccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 366 SK-------NQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 366 ~s-------~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
+. ..|+| |++..|+|++++++. + ...++..+|.|||+|+..||.
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l-------------------~~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----L-------------------DEGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----c-------------------CHHHHHHHHHHHHHcchhhhc
Confidence 94 26777 899999999999862 0 013466899999999999996
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.60 E-value=4.6e-15 Score=136.77 Aligned_cols=97 Identities=23% Similarity=0.388 Sum_probs=67.3
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC----eeecCCcceeeecCCCeEEEEEec
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFPD 161 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~----~~l~~s~sV~~~~~Kk~~FvI~~~ 161 (804)
|+|||.+++.+. .++|++|||||+++.|+||+++.+..|.+. +.|.. +.+...........+.++|.|...
T Consensus 1 KeG~L~K~g~~~-~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~----I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGFKKRWFTLDDRRLMYFKDPLDAFAKGE----VFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC-CCCceeEEEEEeCCEEEEECCCCCcCcCcE----EEeeccccceeEeccCCccccccccceEEEEeC
Confidence 689887665442 489999999999999999999876644321 22332 222211000001123348887765
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
+|+|+|+|+|++||.+||+||+.++.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999984
No 58
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.58 E-value=7.7e-15 Score=134.47 Aligned_cols=97 Identities=20% Similarity=0.322 Sum_probs=69.3
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
|+|+|||.+++. ..++|++|||||+++.|+||+++++..+. -.+.|..|.+...........+.+||.|...
T Consensus 2 v~k~G~L~Kkg~--~~k~WkkRwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~-- 73 (100)
T cd01233 2 VSKKGYLNFPEE--TNSGWTRRFVVVRRPYLHIYRSDKDPVER----GVINLSTARVEHSEDQAAMVKGPNTFAVCTK-- 73 (100)
T ss_pred cceeEEEEeeCC--CCCCcEEEEEEEECCEEEEEccCCCccEe----eEEEecccEEEEccchhhhcCCCcEEEEECC--
Confidence 689998877644 45899999999999999999998764321 2233444433322100000125688988654
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.++|+|+|+|++|+++||.||+..+
T Consensus 74 -~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 -HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 7899999999999999999998765
No 59
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.55 E-value=2.2e-14 Score=129.90 Aligned_cols=93 Identities=27% Similarity=0.432 Sum_probs=71.0
Q ss_pred EEeeeEeecCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 86 KSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 86 KEGyL~~~kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
++|||+++.+.. ..+.|++|||||+++.|+||+++.+..+. ..+.|.++.+... ....++++|.|..+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~----~~~~k~~~F~I~~~-- 71 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE----GLIFLSGFTIESA----KEVKKKYAFKVCHP-- 71 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc----eEEEccCCEEEEc----hhcCCceEEEECCC--
Confidence 689999886532 57899999999999999999998765432 2355666554432 13347888888743
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHH
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
+.++|+|+|+|++++++||.||++|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3489999999999999999999864
No 60
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.53 E-value=3.6e-14 Score=128.99 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=66.8
Q ss_pred EeeeEeecCCCCCCCCceEEEEEeC--CeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668 87 SGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (804)
Q Consensus 87 EGyL~~~kKg~~~ksWkKRWfVL~~--~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d 164 (804)
+|||.+++.+...+.|++|||||++ ..|+||+++.+..|.+ .+.|..+.+.. ...+++++|.|...
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G----~I~L~~~~~~~-----~~~~~~~~F~i~t~--- 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLG----RVDLSGAAFTY-----DPREEKGRFEIHSN--- 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccc----eEECCccEEEc-----CCCCCCCEEEEEcC---
Confidence 6999998765447999999999984 4799999887654321 23344433322 12334678888754
Q ss_pred CcEEEEEecchhhHHHHHHHHHHH
Q 003668 165 GRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 165 grty~LQAdSeeE~~eWI~AI~~a 188 (804)
+|+|+|+|+|+++|+.||.||+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999875
No 61
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.52 E-value=8e-14 Score=142.17 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHcCCccCCe---eecCCCHHHHHHHHHH-HhcCC--CCC-------CCCCChhhhHHHHHHHHhhCCC
Q 003668 245 PSFLEKAIRFIEEHGVQVEGI---LRQAAYVDDVHRRIRE-FEQGK--TEF-------SPEEDAHIIADCVKYVIRELPS 311 (804)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGI---FR~sG~~~~v~~L~~~-ld~g~--~~~-------~~~~d~h~vAslLK~fLReLPe 311 (804)
-.+|..|.+.|+.+|+++++| ||..++...++.++.. ++.+. ... ....|+|+++++||-|||.||+
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 347899999999999999999 9999999999998666 45542 111 1236999999999999999999
Q ss_pred CCCCh-hhHHHHHHHHhcCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668 312 SPVPA-SCCNALLEARRTDRGSRVSAMRTAILETF-PEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (804)
Q Consensus 312 PLlp~-~l~~~~l~a~~~~~~~ri~~i~~lI~~~L-P~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~ 389 (804)
++++. +.|..|...-+..+ .-..+++.+|...+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~-~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSN-YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CccCCHHHHHHHHHHHHhcC-CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 99999 99999999654443 22347888776333 88899999999999999999999999999999999999999987
Q ss_pred C
Q 003668 390 L 390 (804)
Q Consensus 390 ~ 390 (804)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 3
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.51 E-value=4.8e-14 Score=130.67 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=66.5
Q ss_pred EEEeeeEeecCC---CCCCCCceEEEEEeCCeeEEecCCCCC-CCCCCcceeeecCCeeecCCcceee----ecCCCeEE
Q 003668 85 FKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPSA-IPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLT 156 (804)
Q Consensus 85 ~KEGyL~~~kKg---~~~ksWkKRWfVL~~~sL~yYKd~~~~-~p~~g~e~~~~L~~~~l~~s~sV~~----~~~Kk~~F 156 (804)
+++|||+++.++ .+.++|++|||||+++.|.||+++.+. ..+.| .+.|..|.......... ...+++||
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG---~I~L~~~~~ve~~~~~~~~~~~~~~~~~F 77 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKG---SIDLSKIKCVETVKPEKNPPIPERFKYPF 77 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcce---eEECCcceEEEEecCCcCcccccccCccE
Confidence 489999987533 345699999999999999999987653 11111 23344332211000000 11357889
Q ss_pred EEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
.|.+. +++|+|+|+|++|+++||.||+.
T Consensus 78 ~i~t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 78 QVVHD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 88875 68899999999999999999986
No 63
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.49 E-value=9.8e-14 Score=127.26 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=66.3
Q ss_pred EEeeeEeecCCC---CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee-ec-----CCCeEE
Q 003668 86 KSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KA-----DKKLLT 156 (804)
Q Consensus 86 KEGyL~~~kKg~---~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~-~~-----~Kk~~F 156 (804)
-+| |+.++|+ ..++|++|||+|+++.|+|||+.....|.. ..+.|..| .+|.. .. .+.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~---g~IdL~~~-----~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDD---CSIDLSKI-----RSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCC---ceEEcccc-----eEEeeccccccccccCcEE
Confidence 478 5556666 789999999999999999999876543321 12334433 33311 11 235899
Q ss_pred EEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.|..+ .++|+|+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 98765 6999999999999999999998764
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=3e-13 Score=128.75 Aligned_cols=98 Identities=21% Similarity=0.492 Sum_probs=71.9
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC--
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR-- 163 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~-- 163 (804)
|+|||++++. ..+.|++|||||+++.|+||+++.+..+ ...+.|.+|.+... ....+++||.|.....
T Consensus 2 k~G~L~K~~~--~~~~WkkRwfvL~~~~L~yyk~~~~~~~----~g~I~L~~~~v~~~----~~~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 2 REGWLLKQGG--RVKTWKRRWFILTDNCLYYFEYTTDKEP----RGIIPLENVSIREV----EDPSKPFCFELFSPSDKQ 71 (125)
T ss_pred cEEEEEEeCC--CCCCeEeEEEEEECCEEEEEcCCCCCCc----eEEEECCCcEEEEc----ccCCCCeeEEEECCcccc
Confidence 7898886554 4589999999999999999998775432 22344555443332 1235778898776443
Q ss_pred ----------------CCcEEEEEecchhhHHHHHHHHHHHhccCC
Q 003668 164 ----------------DGRAFTLKAESLEDLYDWKTALENALAQAP 193 (804)
Q Consensus 164 ----------------dgrty~LQAdSeeE~~eWI~AI~~ai~~aP 193 (804)
..++|+|+|+|++|+.+||.||+.++...|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 126899999999999999999999996444
No 65
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.43 E-value=7e-13 Score=118.21 Aligned_cols=93 Identities=23% Similarity=0.447 Sum_probs=68.3
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg 165 (804)
|+|||+++..+. .+.|++|||||+++.|.||+++..... .+...+.+..|.+.... ....++++|.|... .
T Consensus 1 k~G~L~kk~~~~-~~~W~kr~~~L~~~~l~~y~~~~~~~~--~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~---~ 71 (94)
T cd01250 1 KQGYLYKRSSKS-NKEWKKRWFVLKNGQLTYHHRLKDYDN--AHVKEIDLRRCTVRHNG---KQPDRRFCFEVISP---T 71 (94)
T ss_pred CcceEEEECCCc-CCCceEEEEEEeCCeEEEEcCCccccc--ccceEEeccceEEecCc---cccCCceEEEEEcC---C
Confidence 689998866443 578999999999999999998875311 12233555555544431 11237889988765 3
Q ss_pred cEEEEEecchhhHHHHHHHHHH
Q 003668 166 RAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 166 rty~LQAdSeeE~~eWI~AI~~ 187 (804)
++|+|+|+|++++.+||.||++
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8899999999999999999975
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.43 E-value=8.9e-13 Score=119.03 Aligned_cols=90 Identities=16% Similarity=0.274 Sum_probs=66.2
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg 165 (804)
++|||.+... ..++|++|||||+++.|.||+++.+... ++--.+.|..|.+.. ...++++|.|... ++
T Consensus 1 ~~G~L~K~~~--~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~------~~~~~~~F~i~~~--~~ 68 (91)
T cd01247 1 TNGVLSKWTN--YINGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAA------HEFDENRFDISVN--EN 68 (91)
T ss_pred CceEEEEecc--ccCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEc------CCCCCCEEEEEeC--CC
Confidence 3797777665 4589999999999999999999776422 122234555554443 2244677888643 35
Q ss_pred cEEEEEecchhhHHHHHHHHHH
Q 003668 166 RAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 166 rty~LQAdSeeE~~eWI~AI~~ 187 (804)
++|+|.|+|++++++||.||+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999975
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.39 E-value=1.8e-12 Score=119.19 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=65.0
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCC------eeEEecCCCCCCCC-CCcceeeecCCeeecCCcceeeecCCCeEE
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT------SLVFFRSDPSAIPQ-KGSEVNLTLGGIDLNNSGSVVVKADKKLLT 156 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~------sL~yYKd~~~~~p~-~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~F 156 (804)
|.++|||.++ ++|+||||||++. .|.||++++..... ..+--.+.|..|.-... .....++++|
T Consensus 2 v~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~---~~d~k~~~~f 72 (101)
T cd01257 2 VRKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINK---RADAKHRHLI 72 (101)
T ss_pred ccEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEee---ccccccCeEE
Confidence 7899998886 6899999999988 69999998753111 11223355565542211 0112345777
Q ss_pred EEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 157 vI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
.|..+ .++|+|.|+|++|+++|+.+|..
T Consensus 73 ~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 73 ALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 77654 58999999999999999999964
No 68
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=7.6e-13 Score=121.17 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=74.0
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEE----ecCCC--CCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVF----FRSDP--SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~y----YKd~~--~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~ 159 (804)
|+||||+++|++...+|.++||.+.+..-.| +.... +..........+.|..|.++.+. ..+|||||+|+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~----~~dRRFCFei~ 76 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTE----SIDKRFCFDVE 76 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccC----CccceeeEeee
Confidence 6899999999988889999999999874332 33221 10111223345778888888763 66999999999
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
...++ .+++|||+|+.++..||.||++
T Consensus 77 ~~~~~-~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 77 VEEKP-GVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence 88777 4599999999999999999976
No 69
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=1.1e-12 Score=121.15 Aligned_cols=90 Identities=28% Similarity=0.523 Sum_probs=61.9
Q ss_pred EEeeeEeecCC-------CCCCCCceEEEEEeC-CeeEEecCCC-CCCCCCCcceeeecCCeeecCCcceee---ecCCC
Q 003668 86 KSGPLFISSKG-------IGWTSWKKRWFILTH-TSLVFFRSDP-SAIPQKGSEVNLTLGGIDLNNSGSVVV---KADKK 153 (804)
Q Consensus 86 KEGyL~~~kKg-------~~~ksWkKRWfVL~~-~sL~yYKd~~-~~~p~~g~e~~~~L~~~~l~~s~sV~~---~~~Kk 153 (804)
++|||++..-+ ...++|+||||||++ +.|+||++.. +..|+ +.|+++.+..|.. ...+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~---------G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQ---------GTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccc---------eEEEccceEEEeecccccCCc
Confidence 47999986544 357999999999985 5666666653 33332 2233333333321 23345
Q ss_pred eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
++|.|.+. +|+|+|.|+|++|+++||.+|..
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHHh
Confidence 78888765 79999999999999999999963
No 70
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.39 E-value=1.9e-12 Score=117.77 Aligned_cols=95 Identities=19% Similarity=0.377 Sum_probs=63.4
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeC--CeeEEecCCCCCCCCCCcceeeecCCeeecCC-c-c--eeeecCCCeEEEEE
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS-G-S--VVVKADKKLLTVLF 159 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~--~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s-~-s--V~~~~~Kk~~FvI~ 159 (804)
.+|||++++ ...+.|++|||||++ ..|.||+++.+..|.+ .+.|..+..... . . ......+.++|.+.
T Consensus 1 ~~G~L~K~g--~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g----~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~ 74 (101)
T cd01235 1 CEGYLYKRG--ALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKG----CIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK 74 (101)
T ss_pred CeEEEEEcC--CCCCCccceEEEEECCCCEEEEecCCCCCccce----EEEcceeEEEeecCCCCCCCCCCCCceEEEEE
Confidence 379777655 456899999999995 4899999887654321 233443221110 0 0 00011345667665
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.. +++|+|+|++++++.+||.||+++|
T Consensus 75 t~---~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 75 TS---KRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eC---CceEEEECCCHHHHHHHHHHHHhhC
Confidence 43 7899999999999999999999864
No 71
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.36 E-value=2.7e-12 Score=117.96 Aligned_cols=97 Identities=25% Similarity=0.334 Sum_probs=65.7
Q ss_pred EEeeeEee------cCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668 86 KSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (804)
Q Consensus 86 KEGyL~~~------kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~ 159 (804)
++|||.++ +++...+.|++|||||+++.|+||+++............+.+.++.+.... ....++++|.|.
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~ 77 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLR 77 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEE
Confidence 36777742 234457899999999999999999988643222222223444344332210 122455777776
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
. .+|++|+|||+++++|..|+.||+.
T Consensus 78 ~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 78 L--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred e--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 4 4689999999999999999999975
No 72
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.35 E-value=4.9e-12 Score=112.06 Aligned_cols=91 Identities=23% Similarity=0.390 Sum_probs=66.2
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg 165 (804)
++|||++++.+ .+.|++|||||+++.|.||+++..... .+...+.+..|.+.. ...+.++|.|.. .++
T Consensus 1 ~~G~L~k~~~~--~~~W~~r~~vl~~~~L~~~~~~~~~~~--~~~~~i~l~~~~~~~------~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLLKWTNY--LKGWQKRWFVLDNGLLSYYKNKSSMRG--KPRGTILLSGAVISE------DDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEEEeccc--CCCceeeEEEEECCEEEEEecCccCCC--CceEEEEeceEEEEE------CCCCCcEEEEEc--CCC
Confidence 58988877543 489999999999999999999875411 112234455554322 223467787764 356
Q ss_pred cEEEEEecchhhHHHHHHHHHHH
Q 003668 166 RAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 166 rty~LQAdSeeE~~eWI~AI~~a 188 (804)
++|+|+|+|++|+.+||.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 73
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=5.4e-12 Score=118.97 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=68.5
Q ss_pred EEeeeEee------cCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCC---CCcceeeecCCeeecCCcceeeecCCCe
Q 003668 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQ---KGSEVNLTLGGIDLNNSGSVVVKADKKL 154 (804)
Q Consensus 86 KEGyL~~~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~---~g~e~~~~L~~~~l~~s~sV~~~~~Kk~ 154 (804)
|+|+|.+. +|+. +.+.|+++||||+++.|++|||+...... ...+..+.+..+.... ...+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~i-----a~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATR-----ASDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEe-----eccccCC
Confidence 68888862 2222 36899999999999999999998642111 1112334444433222 1234444
Q ss_pred EEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.++|.+...+|..|+|||.+++||+.||.+|+.+++
T Consensus 77 ~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 455555567899999999999999999999998874
No 74
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.32 E-value=1.8e-11 Score=109.05 Aligned_cols=101 Identities=23% Similarity=0.415 Sum_probs=76.5
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee--eecCCCeEEEEEec
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV--VKADKKLLTVLFPD 161 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~--~~~~Kk~~FvI~~~ 161 (804)
++++|||++++ ...+.|++|||||+++.|.||+++... ....+...+.|.++.+....... ......++|.|...
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 57999999888 345899999999999999999988741 11233455777777766543210 12357788888875
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.+..|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 23699999999999999999999876
No 75
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=9.6e-12 Score=114.55 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=64.6
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
|+|+|||.+++ ...+.|++|||+|+ ++.|.||++.+..... ..+.|..+.+..+..+.....+.++|.|....
T Consensus 1 v~k~G~L~K~g--~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWLHKRG--EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEEEeec--CCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 46999777654 55699999999999 7789999886643221 12335555544432222234566778886321
Q ss_pred ---CCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 163 ---RDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 163 ---~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
...| +|+|+|++||++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 56799999999999999875
No 76
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.31 E-value=8.1e-12 Score=116.05 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=62.9
Q ss_pred EeeeEeecCCC--CCCCCceEEEEEeCCe-------eEEecCCCCCCCCCCcceeeecCCeeecCCcceeeec--CCCeE
Q 003668 87 SGPLFISSKGI--GWTSWKKRWFILTHTS-------LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA--DKKLL 155 (804)
Q Consensus 87 EGyL~~~kKg~--~~ksWkKRWfVL~~~s-------L~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~--~Kk~~ 155 (804)
+|||.++.... +.++|++|||||+++. |.||+++....+. -.+.|..|.....+...... .+.+.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~----g~I~L~~~~~v~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLE----FVIDLESCSQVDPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccc----eEEECCccEEEcccccccccCcccceE
Confidence 79888865432 4569999999999886 5999987755332 22445544432211000011 12345
Q ss_pred EEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
|.+... .|+|+|.|+|+++|++||.+|...
T Consensus 78 f~i~t~---~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIETI---VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEeC---CccEEEEECCHHHHHHHHHHHHhh
Confidence 666543 689999999999999999999764
No 77
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.21 E-value=4.1e-11 Score=109.69 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=55.4
Q ss_pred CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee----ecCCCeEEEEEecCCCCcEEEEEec
Q 003668 98 GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLTVLFPDGRDGRAFTLKAE 173 (804)
Q Consensus 98 ~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~----~~~Kk~~FvI~~~~~dgrty~LQAd 173 (804)
..++|++|||+|+++.|.||+++... + .+.|++.....|.. ...+.++|.|..+ .++|+|+|+
T Consensus 17 ~~~n~KkRwF~Lt~~~L~Y~k~~~~~-~---------~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 17 KVLHFKKRYFQLTTTHLSWAKDVQCK-K---------SALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred cCcCCceeEEEECCCEEEEECCCCCc-e---------eeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECC
Confidence 34799999999999999999976521 1 22233333222211 1234578888765 589999999
Q ss_pred chhhHHHHHHHHHHH
Q 003668 174 SLEDLYDWKTALENA 188 (804)
Q Consensus 174 SeeE~~eWI~AI~~a 188 (804)
+++|+++||.||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999863
No 78
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.19 E-value=6.9e-11 Score=112.17 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=69.7
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcce-eeecCCCeEEEEEecCC-
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLFPDGR- 163 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV-~~~~~Kk~~FvI~~~~~- 163 (804)
..|||.+....++.++|++|||||+++.|.||+.+.+. ....+--.+.|..|.+.....+ .+...|++.|.|.....
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 57999985544567999999999999999999977653 2223334466777766554322 12335667777654211
Q ss_pred -------------CC--c-EEEEEecchhhHHHHHHHHHHH
Q 003668 164 -------------DG--R-AFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 164 -------------dg--r-ty~LQAdSeeE~~eWI~AI~~a 188 (804)
.. + -|+|.|+|.+|+.+|+.||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 11 1 2678899999999999999863
No 79
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.18 E-value=4.3e-11 Score=130.49 Aligned_cols=142 Identities=19% Similarity=0.271 Sum_probs=122.9
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCC---------------------------CCC------
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---------------------------TEF------ 289 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---------------------------~~~------ 289 (804)
..|.++...+.+.+.+|..++|++|.++..+..++++..-..|+ +.+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46889999999999999999999999988877666665543321 000
Q ss_pred --------CCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003668 290 --------SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMM 360 (804)
Q Consensus 290 --------~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L 360 (804)
...+.+.+||++||.|||+||++|++.++-..|..++.... ....+.++.++. .||..||.++.+|+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk-~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLK-ILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHH-hccccchHHHHHHHHHH
Confidence 12357899999999999999999999999999999998888 788888988775 99999999999999999
Q ss_pred HHHHhhcccCCCCcchhhhhhcccc
Q 003668 361 QTVASSKNQNRMSTSAVAACMAPLL 385 (804)
Q Consensus 361 ~~V~~~s~~NkMt~~NLAv~FgPtL 385 (804)
-.|....-.|||++.||+|+..|++
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHH
Confidence 9999999999999999999999988
No 80
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.17 E-value=6e-11 Score=108.50 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=65.3
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeC----CeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTH----TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~----~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~ 161 (804)
+.|||.++.++. .++|++|||+|.+ +.|+||++.++..|.+ .+.|..+.+.... .....+.+||.+...
T Consensus 1 ~~G~l~K~g~~~-~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~g----li~l~~~~V~~v~--ds~~~r~~cFel~~~ 73 (98)
T cd01245 1 KKGNLLKRTKSV-TKLWKTLYFALILDGSRSHESLLSSPKKTKPIG----LIDLSDAYLYPVH--DSLFGRPNCFQIVER 73 (98)
T ss_pred CCCccccCCCCc-ccccceeEEEEecCCCCceEEEEcCCCCCCccc----eeeccccEEEEcc--ccccCCCeEEEEecC
Confidence 358877665532 6999999999987 8999999888764421 1334444443321 011267799999765
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
.. +.+|+++|++ +++++||.+|+.
T Consensus 74 ~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 AL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 22 2689999999 999999999975
No 81
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=9e-11 Score=122.29 Aligned_cols=103 Identities=23% Similarity=0.456 Sum_probs=75.1
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
.-+||||++++.+ ..++||+|||+|++++|+||.--.+.-|.+ .++|....|+.. +...|.+||.+.....
T Consensus 260 pdREGWLlKlgg~-rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~V----edP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKLGGN-RVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREV----EDPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeeecCC-cccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeec----cCCCCCCeEEEecCCC
Confidence 3589999998543 569999999999999999987555443322 133444444432 3457889998875433
Q ss_pred ------------CCc-------EEEEEecchhhHHHHHHHHHHHhccCCCC
Q 003668 164 ------------DGR-------AFTLKAESLEDLYDWKTALENALAQAPST 195 (804)
Q Consensus 164 ------------dgr-------ty~LQAdSeeE~~eWI~AI~~ai~~aP~~ 195 (804)
+|| +|.++|.+.+++.+||.+|+.++...|..
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 333 79999999999999999999999665643
No 82
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.12 E-value=1.1e-10 Score=110.58 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=57.9
Q ss_pred EEeeeEee------cCCC--CCCCCceEEEEEeCCeeEEecCCCCCC---CC--CC-----cceeeecCCeeecCCccee
Q 003668 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAI---PQ--KG-----SEVNLTLGGIDLNNSGSVV 147 (804)
Q Consensus 86 KEGyL~~~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~---p~--~g-----~e~~~~L~~~~l~~s~sV~ 147 (804)
|||||.+. .|+. ..++|+..|+||++..|.|||+..... +. .. +...+.|..+....+
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a---- 77 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIA---- 77 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEE----
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeC----
Confidence 79998862 3344 678999999999999999999943211 10 01 112244444433322
Q ss_pred eecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 148 ~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.+++|..++|.+...+|..|+|||.|+++|.+||.+|.-+.
T Consensus 78 -~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 78 -SDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp -TTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred -cccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 33433334444446689999999999999999999998654
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.12 E-value=9.7e-11 Score=137.77 Aligned_cols=145 Identities=21% Similarity=0.300 Sum_probs=130.2
Q ss_pred CCcHHHHHHHHHHHHcCCccCCeee-cCCCHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHhhCCCC-CCChhh
Q 003668 243 GTPSFLEKAIRFIEEHGVQVEGILR-QAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSS-PVPASC 318 (804)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPeP-Llp~~l 318 (804)
.||.++..|+.+++.+|+..+|||| ++|....|..++.++.+|.... ..+.+... |.+||.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 5899999999999999999999999 8999999999999999883221 22334555 99999999999999 999999
Q ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668 319 CNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (804)
Q Consensus 319 ~~~~l~a~~~~~-~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~ 389 (804)
+..++.+....+ .+++..++.++. .+|..+..++.+|+.|+...+..+..|.|++.|+|+||||+++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 999999998888 677788888887 8999999999999999999999999999999999999999997655
No 84
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.08 E-value=5.2e-10 Score=103.03 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=71.1
Q ss_pred cCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC-CcEEEEEe
Q 003668 94 SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD-GRAFTLKA 172 (804)
Q Consensus 94 kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d-grty~LQA 172 (804)
-++...+.||+|||+|++..|+|||++.+.. +.+...+.|.+|.+.+...| ..++|++.+..+..+ .++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3445578899999999999999999877643 45667788999998875322 345687777655333 37999999
Q ss_pred cchhhHHHHHHHHHHHh
Q 003668 173 ESLEDLYDWKTALENAL 189 (804)
Q Consensus 173 dSeeE~~eWI~AI~~ai 189 (804)
+|++++..||.|.+-|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 85
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.02 E-value=1.2e-09 Score=102.48 Aligned_cols=98 Identities=24% Similarity=0.424 Sum_probs=51.0
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCC-----------CCCCcceeeecCCeeecCCc--ceeeecC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAI-----------PQKGSEVNLTLGGIDLNNSG--SVVVKAD 151 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~-----------p~~g~e~~~~L~~~~l~~s~--sV~~~~~ 151 (804)
|+|||++.... .++.|++|||+|+ ++.|.|||.+.+.. ....+..........+.... .. ....
T Consensus 1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNP-FGEI 78 (112)
T ss_dssp EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T---SS-
T ss_pred CCceEEEecCC-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCc-ccCc
Confidence 68999987766 4689999999999 99999999832211 00001111100000000000 00 0111
Q ss_pred CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
-...+.+.+. .++|.|.|++.+|+.+||+||+.|
T Consensus 79 ~~~~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP---TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence 2223344333 589999999999999999999865
No 86
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.98 E-value=3.5e-09 Score=97.36 Aligned_cols=98 Identities=13% Similarity=0.245 Sum_probs=69.5
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
.+|||||.+...+. +.|+.|||.|-++.|.|++...... +.....-.+.+.++.+... .....+++|.|...
T Consensus 2 ~ikeG~L~K~~~~~--~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~----~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEGSVLKISSTT--EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG----DNLERPHSFLVSGK- 74 (101)
T ss_pred cccceEEEEEecCC--CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC----CCCCcCceEEEecC-
Confidence 57999887766554 7999999999999999998543211 1011112255555555432 12346778888765
Q ss_pred CCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 163 ~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.++|+|+|+|++|+.+||.||+.++.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999873
No 87
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.94 E-value=8.9e-09 Score=89.89 Aligned_cols=100 Identities=30% Similarity=0.494 Sum_probs=70.5
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d 164 (804)
.++|||++...+ ....|+++||+|.++.|.||++...... ......+.+..+.+...... .....+++|.|... +
T Consensus 2 ~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~~-~~~~~~~~f~l~~~--~ 76 (102)
T smart00233 2 IKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKPKGSIDLSGITVREAPDP-DSAKKPHCFEIKTA--D 76 (102)
T ss_pred ceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCCceEEECCcCEEEeCCCC-ccCCCceEEEEEec--C
Confidence 589999987764 3478999999999999999998764311 22223355555544433110 00135678888764 3
Q ss_pred CcEEEEEecchhhHHHHHHHHHHHh
Q 003668 165 GRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 165 grty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+..|+|+|+|++++..|+.+|+.++
T Consensus 77 ~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 88
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.93 E-value=5.1e-09 Score=99.52 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=55.8
Q ss_pred CCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCc--------ceeeecCCCeEEEEEecCCCCcEEEEEe
Q 003668 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG--------SVVVKADKKLLTVLFPDGRDGRAFTLKA 172 (804)
Q Consensus 101 sWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~--------sV~~~~~Kk~~FvI~~~~~dgrty~LQA 172 (804)
.|++|||||+++.|.||+++.+..+.. .+.++ ....+.... .+.....+++.|.|... .|+|.|.|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~--vil~D-~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R~~~l~a 105 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQILD--VILFD-VDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NRSLKLKC 105 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCceee--EEEEc-CCccEEeCCcccccccccccccCCCceEEEEEcC---CcEEEEEe
Confidence 799999999999999999887653311 11111 111111110 01122456777777654 79999999
Q ss_pred cchhhHHHHHHHHHHH
Q 003668 173 ESLEDLYDWKTALENA 188 (804)
Q Consensus 173 dSeeE~~eWI~AI~~a 188 (804)
.|+.++++|+++|+.|
T Consensus 106 ~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 106 KSSRKLKQWMASIEDA 121 (121)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999864
No 89
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.85 E-value=1.3e-08 Score=91.39 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=60.0
Q ss_pred eeeEeecCCCCCCCCceEEEEE--eCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668 88 GPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (804)
Q Consensus 88 GyL~~~kKg~~~ksWkKRWfVL--~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg 165 (804)
|||.+.++.. .+.|+|||||| ..+.|.||+++.+.. .+ +. ++++.+.+.. ..+..++.|.. .+
T Consensus 1 G~llKkrr~~-lqG~~kRyFvL~~~~G~LsYy~~~~~~~-~r-Gs--i~v~~a~is~-------~~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLKKRRKP-LQGWHKRYFVLDFEKGTLSYYRNQNSGK-LR-GS--IDVSLAVISA-------NKKSRRIDIDS---GD 65 (89)
T ss_pred Ccceeecccc-CCCceeEEEEEEcCCcEEEEEecCCCCe-eE-eE--EEccceEEEe-------cCCCCEEEEEc---CC
Confidence 7888766554 58999999999 899999999876541 11 11 2222222221 13444555543 36
Q ss_pred cEEEEEecchhhHHHHHHHHHHH
Q 003668 166 RAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 166 rty~LQAdSeeE~~eWI~AI~~a 188 (804)
.+|.|.|.++++.+.|+.||+.+
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999864
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.72 E-value=5e-08 Score=84.36 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=65.5
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dg 165 (804)
++|||++...+. ...|+++||+|.++.|.+|+...... ...+...+.+..+.+.... ......++|.|... .+
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~--~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESP---DDSGRKNCFEIRTP--DG 73 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECC---CcCCCCcEEEEecC--CC
Confidence 479888766553 46899999999999999998776421 1112233444444443321 01124678888764 33
Q ss_pred cEEEEEecchhhHHHHHHHHHH
Q 003668 166 RAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 166 rty~LQAdSeeE~~eWI~AI~~ 187 (804)
+.|+|+|+|++++..|+.+|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 91
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.70 E-value=1.3e-07 Score=82.49 Aligned_cols=96 Identities=25% Similarity=0.442 Sum_probs=66.8
Q ss_pred EeeeEeecCCC--CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668 87 SGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (804)
Q Consensus 87 EGyL~~~kKg~--~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d 164 (804)
+|||.+..... ....|++|||+|.+..|.||+++....... ..+.+..+.+.... ....++++|.|......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~---~~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDP---DGSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECC---CCCCCCceEEEECCCCC
Confidence 68777766554 257999999999999999999887543211 12444444433221 01135788888754223
Q ss_pred CcEEEEEecchhhHHHHHHHHHHH
Q 003668 165 GRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 165 grty~LQAdSeeE~~eWI~AI~~a 188 (804)
.+.|+|+|++++++..|+.||+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999863
No 92
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.69 E-value=1.4e-09 Score=130.89 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=113.6
Q ss_pred eecCCCchhhhccccccccccccceeeccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCCCc
Q 003668 5 QIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNA 83 (804)
Q Consensus 5 ~~~~~~~~~~~~d~~~~~~~l~~~iq~tR~-fe~tr~~~e~l~~~~~~m~~~p~~~~~s~~pp~~~~~p~~~~~~~~~~~ 83 (804)
-||++|+ .+.+.++||+.++.-+||.+|. ++..++.++.. +......-.........+..++... ....
T Consensus 204 ~fF~~g~-~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~---~q~l~~~~~~~~~~~~~~~~~~~~~------~~~~ 273 (785)
T KOG0521|consen 204 NFFKQGE-DLLSQMDPYIKKVATYVQQLREESDAEQRAMEQR---YQELRSASNLESRPKSDSASPSGGN------LKLG 273 (785)
T ss_pred chhcccH-hHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhH---HHHHHHHhhhhhhcccccccccccc------ccch
Confidence 5899997 8999999999999999999999 87777766644 2222111000000000000011000 0012
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
..+.||||++... ..+.|+||||-..++.+.|+..-..... .....|+.|.++.. ....++++||.|+..
T Consensus 274 ~~~~~~l~~k~~~-~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~---~~~~drr~CF~iiS~-- 343 (785)
T KOG0521|consen 274 YRMEGYLRKKASN-ASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPD---AEQRDRRFCFEIISP-- 343 (785)
T ss_pred hhhhhhhhhhccc-chhhHHhhhhhhhccccccccccccccc----cccccchhccccCC---cccccceeeEEEecC--
Confidence 4577777765554 4689999999999999998876544321 35577888887775 234589999998873
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENALAQ 191 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai~~ 191 (804)
.++|+|||+++.+..+||.+|++.+..
T Consensus 344 -tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 -TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred -CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 688999999999999999999998753
No 93
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.62 E-value=2.5e-07 Score=85.08 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=62.9
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
.++||+|.+..++. .|.|+||.+.+ .|+|+.............-.+.|.++.+.... ......+||.|..+
T Consensus 2 ~ikEG~L~K~~~k~---~~~R~~FLFnD-~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~---~~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLLKLSKKG---LQQRMFFLFSD-LLLYTSKSPTDQNSFRILGHLPLRGMLTEESE---HEWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEEEEeCCC---CceEEEEEccc-eEEEEEeecCCCceEEEEEEEEcCceEEeecc---CCcCCceeEEEEcC--
Confidence 68999998876543 57766666665 45555432211101111223556666655431 11245789999855
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.+.|+|+|.|++|+.+||.+|+.+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999873
No 94
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.61 E-value=2.2e-07 Score=83.89 Aligned_cols=99 Identities=29% Similarity=0.440 Sum_probs=73.8
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC-
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG- 162 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~- 162 (804)
|++.|||-+..-+.....=|.|||||+..+|+|||+..+..+ ...+.|.++.++.... .-..+++||.+.-..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~--gf~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEG--GFMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecc--cccCCCcEEEEEcCcc
Confidence 578999999887765555699999999999999999876533 2346677776665421 014678999887443
Q ss_pred ----CCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 163 ----RDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 163 ----~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
.+-++.-|.|++++++..|...+-.|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 23468899999999999999887554
No 95
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.51 E-value=1.2e-07 Score=86.15 Aligned_cols=99 Identities=19% Similarity=0.354 Sum_probs=66.8
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCee-----EEecCCCCCCCCCCcceeeecCCeeecCCccee-------eecCC
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSL-----VFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-------VKADK 152 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL-----~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-------~~~~K 152 (804)
.++|||++.++. .+++|+||||+|++-+- .-|+.++.. |...+.|.+.++.-..... .-...
T Consensus 3 k~sGyL~k~Gg~-~~KkWKKRwFvL~qvsQYtfamcsy~ekks~-----P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg 76 (117)
T cd01234 3 KHCGYLYAIGKN-VWKKWKKRFFVLVQVSQYTFAMCSYREKKAE-----PTEFIQLDGYTVDYMPESDPDPNSELSLQGG 76 (117)
T ss_pred ceeEEEEeccch-hhhhhheeEEEEEchhHHHHHHHhhhhhcCC-----chhheeecceEEeccCCCCCCcccccccccc
Confidence 489988877654 47999999999997642 225544322 2233556666655543332 11245
Q ss_pred CeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (804)
Q Consensus 153 k~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a 192 (804)
+++|..+ +.|.+..|..++|.|+..|++||=.|.+++
T Consensus 77 ~~ff~av---kegd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 77 RHFFNAV---KEGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred hhhhhee---ccCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 6666544 347889999999999999999999888654
No 96
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.41 E-value=2e-07 Score=107.25 Aligned_cols=165 Identities=14% Similarity=0.149 Sum_probs=136.2
Q ss_pred CCCCCccccchhHhhhcCCCCcHHHHHHHHHHHHcCCccCCeeecCCCHHHH----HHHHHHH-hcCCCCCCCCCChhhh
Q 003668 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDV----HRRIREF-EQGKTEFSPEEDAHII 298 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v----~~L~~~l-d~g~~~~~~~~d~h~v 298 (804)
..+...||+||+..+.+++.+|..+......|+..+..++++||..-...-+ ......+ ..|.....+...+|++
T Consensus 411 ~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ta 490 (741)
T KOG4724|consen 411 ELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHTA 490 (741)
T ss_pred hhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchHH
Confidence 3456789999999999999999998888889999999999999984332222 2222222 3355555666799999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHH--------HHHhcCChhHHHHHHHHHHHHHHHHhhccc
Q 003668 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRT--------AILETFPEPNRKLLQRILMMMQTVASSKNQ 369 (804)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~l~a~~~~~-~~ri~~i~~--------lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~ 369 (804)
++++|.|+|.+|..++..+.+.+++++....+ +++.++++. .. .+.|..+..+....+.-...+..++..
T Consensus 491 asv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~-~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 491 ASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVR-DHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccc-cCCCCCcccccccccccceeccccccc
Confidence 99999999999999999999999999998888 789999987 44 588999898888888888888999999
Q ss_pred CCCCcchhhhhhcccccCCC
Q 003668 370 NRMSTSAVAACMAPLLLRPL 389 (804)
Q Consensus 370 NkMt~~NLAv~FgPtLlrp~ 389 (804)
+.|+..|++.|..|+++.-.
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999997643
No 97
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.35 E-value=1e-06 Score=81.67 Aligned_cols=101 Identities=25% Similarity=0.344 Sum_probs=61.4
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecC--CcceeeecCCCeEEEEEecCC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN--SGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~--s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
.+|+||+++-|. ++|||+||+|+..-|+|+-..+...+. .-..-..+.+..|-. ...-..+.--.|||.|.+...
T Consensus 2 ~~g~LylK~~gk--KsWKk~~f~LR~SGLYy~~Kgksk~sr-dL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADGK--KSWKKYYFVLRSSGLYYFPKEKTKNTR-DLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCCC--ccceEEEEEEeCCeeEEccCCCcCCHH-HHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 479999988665 899999999999999887544322211 000001111111110 000011223457888876432
Q ss_pred C----CcEEEEEecchhhHHHHHHHHHHHh
Q 003668 164 D----GRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 164 d----grty~LQAdSeeE~~eWI~AI~~ai 189 (804)
. --..+|||++++.+..||.||+=+-
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 1357899999999999999998554
No 98
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.26 E-value=9.5e-06 Score=76.31 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=71.6
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCC--Ccceeeec--CCeeecCCcce----eeecCCCeEE
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK--GSEVNLTL--GGIDLNNSGSV----VVKADKKLLT 156 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~--g~e~~~~L--~~~~l~~s~sV----~~~~~Kk~~F 156 (804)
..||||.+.+++...+.|.++|+|+.+..|+||..+.+...+. .+...+.+ +.+.++..+.. ..+.+-.+.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 3799999888876667999999999999999998665432222 22343444 23444322211 1234455667
Q ss_pred EEEec----CCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 157 VLFPD----GRDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 157 vI~~~----~~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
.|+.. ..++.+.+|-|+++.|.+.|+.||.+.
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 77752 234678999999999999999999864
No 99
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.11 E-value=2.8e-05 Score=88.13 Aligned_cols=145 Identities=14% Similarity=0.227 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHcCCccCCee---ecCCCHHHHHHHHHHH-hcCCCC--C--------CCCCChhhhHHHHHHHHhhCC
Q 003668 245 PSFLEKAIRFIEEHGVQVEGIL---RQAAYVDDVHRRIREF-EQGKTE--F--------SPEEDAHIIADCVKYVIRELP 310 (804)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~--~--------~~~~d~h~vAslLK~fLReLP 310 (804)
=.+|+.|.+.|..+|+++++|| |-.-+...++.+...+ ..+... . ....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478899999999999999998 6777888888877765 443211 0 124599999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhcccCCCCcchhhhhhcccccCCC
Q 003668 311 SSPVPASCCNALLEARRTDRGSRVSAMRTAILETFP-EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (804)
Q Consensus 311 ePLlp~~l~~~~l~a~~~~~~~ri~~i~~lI~~~LP-~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~ 389 (804)
..+++.+.|..|...-+..+ ....++..+|-..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|-..
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~-yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~ 167 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG-YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP 167 (420)
T ss_pred CCccccHHHHHHHHHHhhcC-CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence 99999999999987755444 334566666665775 6667899999999999999999999999999999999999876
Q ss_pred C
Q 003668 390 L 390 (804)
Q Consensus 390 ~ 390 (804)
.
T Consensus 168 ~ 168 (420)
T PF08101_consen 168 D 168 (420)
T ss_pred C
Confidence 4
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.09 E-value=3.2e-05 Score=71.84 Aligned_cols=102 Identities=12% Similarity=0.259 Sum_probs=69.3
Q ss_pred EEeeeEeecCCCC--CCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC-eeecCCcce----eeecCCCeEEEE
Q 003668 86 KSGPLFISSKGIG--WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG-IDLNNSGSV----VVKADKKLLTVL 158 (804)
Q Consensus 86 KEGyL~~~kKg~~--~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~-~~l~~s~sV----~~~~~Kk~~FvI 158 (804)
.||||-+.+.+.. .+.|++.|+|+.+..|++|..+.+.... .+...+.++. +.++..+.. ....+-.+.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~-~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS-TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-CcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5898887666443 3589999999999999999976643211 1233333332 222221111 123455567888
Q ss_pred EecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 159 ~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+.. ..+++.+|-|+++.|.+.|+.||...|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 764 346999999999999999999999877
No 101
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.08 E-value=3.5e-06 Score=90.91 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=67.4
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEe-CCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEe
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~-~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~ 160 (804)
.|++||||. ++|-..++|+.|||+|. ++.|.-|+.++... +...+--.+.++.|.+.. ...-|.+.|+|.+
T Consensus 14 ~vvkEgWlh--KrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~-----~erPrPntFiiRc 86 (516)
T KOG0690|consen 14 DVVKEGWLH--KRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMK-----TERPRPNTFIIRC 86 (516)
T ss_pred hhHHhhhHh--hcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhh-----ccCCCCceEEEEe
Confidence 389999555 55555699999999996 55888888765432 212222224444554433 3445666676654
Q ss_pred -cCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 161 -DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 161 -~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
....-..-+|.++|++++++|+.||+.+..
T Consensus 87 LQWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 87 LQWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 233345679999999999999999998653
No 102
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.93 E-value=1.3e-05 Score=95.56 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=76.6
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee-eecCCCeEEEEEe-
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFP- 160 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-~~~~Kk~~FvI~~- 160 (804)
.|...|||++-.-+.+...|+||||+|.++.+.|+|.+.+.. .+++.-.+.|..|.-.....+. +.-.+.+.|.|.+
T Consensus 989 dVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred ceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence 477789999877666667899999999999999999877664 4555556777777765554442 1123455566652
Q ss_pred ----cCCC-----Cc-EEEEEecchhhHHHHHHHHHHHhc
Q 003668 161 ----DGRD-----GR-AFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 161 ----~~~d-----gr-ty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.+.+ -| ...|.|++.++++.|+.+|..++.
T Consensus 1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 0000 11 478999999999999999998873
No 103
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.72 E-value=7.7e-05 Score=84.51 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCc-ceeeecCCeeecCCcceeeecCCCeEEEEE
Q 003668 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGS-EVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (804)
Q Consensus 81 ~~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~-e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~ 159 (804)
.+...++|+||++..|. |+|||+||||+..-|+|+-..+...+..-. -..+.-..+-....+.-.-+.--.++|.|.
T Consensus 314 ~~~pei~GfL~~K~dgk--KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGK--KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCCccccceeeeccccc--ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence 34568999999887765 899999999999999987544332221100 000111111111110000111123556666
Q ss_pred ecC-CCC-c-EEEEEecchhhHHHHHHHHHHHh
Q 003668 160 PDG-RDG-R-AFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 160 ~~~-~dg-r-ty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+.. +.. + .-+|||+++..+..|+.||+=+-
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 532 111 1 35899999999999999998543
No 104
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.70 E-value=0.00032 Score=65.20 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=66.6
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
..++||-|.+.-+ +..+.|||.|=.+.|+|-+-.... ......-.+.|.++.+.... +....++.|.|...
T Consensus 3 ~li~eG~L~K~~r----k~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~---d~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLTKMCR----KKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIE---DDGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEEEeec----CCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecC---CcccccceEEEecC-
Confidence 3789998876553 346779999999999985421110 01111123567777665431 22234677888765
Q ss_pred CCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 163 ~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.+.|+++|.|+++..+||.+|..++.
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999884
No 105
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=97.50 E-value=6.1e-05 Score=89.82 Aligned_cols=96 Identities=20% Similarity=0.375 Sum_probs=67.8
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCC--eeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~--sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~ 161 (804)
-+.+||||+ +|...|-|+.|||||... +|.||.+..+..|.+ ...-.....+.... ....+.|-+|++...
T Consensus 1634 r~~eG~LyK--rGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG-~IdLaevesv~~~~----~k~vdekgffdlktt 1706 (1732)
T KOG1090|consen 1634 RIPEGYLYK--RGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG-CIDLAEVESVALIG----PKTVDEKGFFDLKTT 1706 (1732)
T ss_pred cCcccchhh--cchhhcccccceeEecCCccceeeecccccccccc-hhhhhhhhhhcccC----ccccCccceeeeehh
Confidence 356998875 556679999999999866 799999877665433 22112222222111 123467777888765
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.|+|-|+|.+-....+|++.|+..+
T Consensus 1707 ---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1707 ---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 6899999999999999999999875
No 106
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=4.6e-05 Score=86.67 Aligned_cols=98 Identities=26% Similarity=0.293 Sum_probs=67.7
Q ss_pred eEEEeeeEee-------cCCC-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcce------eee
Q 003668 84 VFKSGPLFIS-------SKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV------VVK 149 (804)
Q Consensus 84 v~KEGyL~~~-------kKg~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV------~~~ 149 (804)
+.|.|+|-++ +|.+ +.+.||..|.||++--|+|-||+--. . . .|..-++.+..+| .-.
T Consensus 506 ~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p---~-k----alse~~lknavsvHHALAt~At 577 (774)
T KOG0932|consen 506 TYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP---G-K----ALSESDLKNAVSVHHALATPAT 577 (774)
T ss_pred hhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc---c-c----chhhhhhhhhhhhhhhhcCCCc
Confidence 7899977652 1222 56889999999999999998865311 0 0 0111111111111 124
Q ss_pred cCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 150 ~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.++|..|+|.+++.+.|+|+|||.+.++|+.||..|.-+.
T Consensus 578 dY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA 617 (774)
T KOG0932|consen 578 DYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA 617 (774)
T ss_pred ccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 5777778888888899999999999999999999999654
No 107
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.45 E-value=0.0011 Score=61.54 Aligned_cols=87 Identities=26% Similarity=0.324 Sum_probs=53.0
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCC-eeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~-sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~ 161 (804)
.++++|++.+++ |. .+++||++|++. .|+|+...... + -+.|.+.....+..... + .|.|..+
T Consensus 12 ~Il~~g~v~K~k-gl---~~kkR~liLTd~PrL~Yvdp~~~~---------~-KGeI~~~~~l~v~~k~~-~-~F~I~tp 75 (104)
T PF14593_consen 12 LILKQGYVKKRK-GL---FAKKRQLILTDGPRLFYVDPKKMV---------L-KGEIPWSKELSVEVKSF-K-TFFIHTP 75 (104)
T ss_dssp -EEEEEEEEEEE-TT---EEEEEEEEEETTTEEEEEETTTTE---------E-EEEE--STT-EEEECSS-S-EEEEEET
T ss_pred eEEEEEEEEEee-ce---EEEEEEEEEccCCEEEEEECCCCe---------E-CcEEecCCceEEEEccC-C-EEEEECC
Confidence 499999877663 33 399999999999 55555433211 1 13344443333322222 2 4556554
Q ss_pred CCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 162 ~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+|+|+|.. .+.+...|+++|+.+.
T Consensus 76 ---~RtY~l~d-~~~~A~~W~~~I~~~~ 99 (104)
T PF14593_consen 76 ---KRTYYLED-PEGNAQQWVEAIEEVK 99 (104)
T ss_dssp ---TEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred ---CcEEEEEC-CCCCHHHHHHHHHHHH
Confidence 89999998 5666888999999876
No 108
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.42 E-value=0.00027 Score=82.67 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=67.2
Q ss_pred eEEEeeeEeecCC--C-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceee-ecCCCeEEEEE
Q 003668 84 VFKSGPLFISSKG--I-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KADKKLLTVLF 159 (804)
Q Consensus 84 v~KEGyL~~~kKg--~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~-~~~Kk~~FvI~ 159 (804)
|.|+|.+.++.++ . +.+++|||||.|+...|.|.|++... +...+.|..| +....+.. .-+.+++|.|+
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI--~avEklee~sF~~knv~qVV 637 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNI--RAVEKLEEKSFKMKNVFQVV 637 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHH--HHHHHhhhhccCCCceEEEE
Confidence 5666655554332 2 34789999999999999999987633 2233334332 22222211 23577788877
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~ 191 (804)
..+ |+.+|||.+--|.++|+.||.++...
T Consensus 638 ~~d---rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 638 HTD---RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred ecC---cceeEecCCchHHHHHHHHHHHHhcc
Confidence 663 79999999999999999999998753
No 109
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.38 E-value=0.0011 Score=62.41 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=65.8
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC-CC--CCccee----eecCCeeecCCcceeeecCCCeE
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQ--KGSEVN----LTLGGIDLNNSGSVVVKADKKLL 155 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~--~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~ 155 (804)
..++||-|-+...+ .+.++.|||.|=++.|+|.|...... .. .+..+. +.+..+.|... .+...-++.
T Consensus 3 elI~EG~L~ki~~~--~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~---~d~~~~kna 77 (112)
T cd01261 3 EFIMEGTLTRVGPS--KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDK---PDSSEYKNA 77 (112)
T ss_pred cccccCcEEEEecc--cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEc---CCCcccCce
Confidence 46889977654432 36789999999999999988543210 00 011111 33444444422 112223667
Q ss_pred EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
|.|... +++.|.|+|.|+++..+||++|..++.
T Consensus 78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 877753 367899999999999999999998875
No 110
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.33 E-value=0.00093 Score=79.43 Aligned_cols=103 Identities=17% Similarity=0.314 Sum_probs=70.5
Q ss_pred ceEEEeeeEeecCC-CCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeee----cCCCeEEE
Q 003668 83 AVFKSGPLFISSKG-IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV 157 (804)
Q Consensus 83 ~v~KEGyL~~~kKg-~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~----~~Kk~~Fv 157 (804)
.+.+|||||.-+.. .+...-++|||||.+..+.|||.++... .+.+++..|.....|.+. ...+-.|+
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~yv 75 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV 75 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEEE
Confidence 37899999986654 4555679999999999999999865331 133444444433333111 22344455
Q ss_pred EEe--cCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668 158 LFP--DGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (804)
Q Consensus 158 I~~--~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a 192 (804)
+.. +....+..+|.|-+.+|...|+.|++.++.+.
T Consensus 76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 554 23345678999999999999999999999753
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.30 E-value=0.00051 Score=79.59 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=60.8
Q ss_pred CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEe-cCCCCCCCCCCccee-eecCCeeecCCccee--eecCCCeEEE
Q 003668 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFF-RSDPSAIPQKGSEVN-LTLGGIDLNNSGSVV--VKADKKLLTV 157 (804)
Q Consensus 82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yY-Kd~~~~~p~~g~e~~-~~L~~~~l~~s~sV~--~~~~Kk~~Fv 157 (804)
+.+.+.|||++..... .|++|||.+..+.+... ...++.......... ..+..| ..|. ....+.++|.
T Consensus 375 sDv~~~G~l~k~~~~~---~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v-----~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM---RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDV-----FPVPEVYSQKHPNQLV 446 (478)
T ss_pred CCcccceEEeccCCCc---chhhheEEecCCceEEEeccccccCCCCCccccHHHhccc-----ccccHHhcCCCCceEE
Confidence 3478999888765433 59999999998866554 322211000000011 111111 1110 1223567777
Q ss_pred EEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
+. .+.|+.++|+|+|+++|++||.+|+.+++
T Consensus 447 i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LW--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 74 45688899999999999999999999873
No 112
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.29 E-value=0.00065 Score=63.68 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCee-ecC-CcceeeecCCCeEEEEEecC
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNN-SGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~-l~~-s~sV~~~~~Kk~~FvI~~~~ 162 (804)
+|||||---.... +.|||+|++|....+.+|+++.+..+-+. +.|..|. +.. .+.........+||+|.+.
T Consensus 1 lkEGWmVHyT~~d--~~rKRhYWrLDsK~Itlf~~e~~skyyKe----IPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~- 73 (117)
T cd01239 1 LKEGWMVHYTSSD--NRRKKHYWRLDSKAITLYQEESGSRYYKE----IPLAEILSVSSNNGDSVLAKHPPHCFEIRTT- 73 (117)
T ss_pred CccceEEEEecCc--cceeeeEEEecCCeEEEEEcCCCCeeeEE----eehHHheEEeccCCCcCCCCCCCcEEEEEec-
Confidence 3799876444333 68999999999999999999876543221 2222221 110 0111122457799999875
Q ss_pred CCCcEEEEEec
Q 003668 163 RDGRAFTLKAE 173 (804)
Q Consensus 163 ~dgrty~LQAd 173 (804)
..+|+.+.+
T Consensus 74 --~~vY~VG~~ 82 (117)
T cd01239 74 --TNVYFVGGE 82 (117)
T ss_pred --CEEEEeccc
Confidence 688888775
No 113
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.22 E-value=0.0011 Score=62.00 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=63.3
Q ss_pred EeeeEeecCC--CCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecC--CeeecCCccee-eecCCCeEEEEEe
Q 003668 87 SGPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLG--GIDLNNSGSVV-VKADKKLLTVLFP 160 (804)
Q Consensus 87 EGyL~~~kKg--~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~--~~~l~~s~sV~-~~~~Kk~~FvI~~ 160 (804)
-|||.-+-.+ ...+.|+.+|++|++..|++|+..+-.. ....+.....|- .+.+...+... ....+.+||.+.+
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 3766655443 2458999999999999999999876421 111122222232 11221111110 0225668998876
Q ss_pred cCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 161 DGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 161 ~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
... -..++|..++..|+..|..||..
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 533 37899999999999999999964
No 114
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.71 E-value=0.00039 Score=79.79 Aligned_cols=100 Identities=21% Similarity=0.402 Sum_probs=67.4
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeE-----EecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEE
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLV-----FFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVL 158 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~-----yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI 158 (804)
.-..||||.-++.. |+.||||||||..-+-+ -|+.++.. +..-+.|.+.++.-...-.--...+.+|.-
T Consensus 464 mkhsgylyaig~nv-wkrwkkrffvlvqvsqytfamcsyrekkae-----pqel~qldgytvdytdp~pglqgg~~ffna 537 (1218)
T KOG3543|consen 464 MKHSGYLYAIGRNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAE-----PQELIQLDGYTVDYTDPSPGLQGGKHFFNA 537 (1218)
T ss_pred cccceeehhhhhHH-HHHhHhhEEEEEEhhhhhhHhhhhhhcccC-----hHHHhhccCeeeccCCCCCccccchHHHHH
Confidence 56789999887765 89999999999876432 24443321 223355677766655433212233433432
Q ss_pred EecCCCCcEEEEEecchhhHHHHHHHHHHHhccC
Q 003668 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (804)
Q Consensus 159 ~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~a 192 (804)
+ +.|.+..|..+++.|+..|++||-.+.+++
T Consensus 538 v---kegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 538 V---KEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred h---ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 2 237889999999999999999999988754
No 115
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.59 E-value=0.00075 Score=59.75 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=60.8
Q ss_pred EeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCC----eeecCCcceeeecCCCeEEEEEecC
Q 003668 87 SGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 87 EGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~----~~l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
|||||+.+++. -+|||.||++..+.||.++.+.. -.++.|+. +.+...... ...-.-..|-|....
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~-----L~sF~L~~s~~s~Pm~~~~~A-~~N~Gi~A~G~L~~~ 70 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY-----LCSFQLSSSVVSHPMVNFSQA-VPNLGINAFGFLMYS 70 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCce-----eeeeehhhhhhhccccccccc-CCCCCeeEEEEEEec
Confidence 69999999875 58999999999999999765321 01222322 111111000 011122345555556
Q ss_pred CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 163 ~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
.+++..-+-|++.+.|+.|+++|.+..
T Consensus 71 ~~~~~~~~FA~S~~~~~~Wi~~mN~~s 97 (104)
T PF15408_consen 71 PSRRHVQCFASSKKVCQSWIQVMNSPS 97 (104)
T ss_pred CCcchhhhhhhHHHHHHHHHHHhcChh
Confidence 778888899999999999999997644
No 116
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.29 E-value=0.04 Score=50.73 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=60.1
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
.++||.|...+. =+-|++-|=+..|.|.|..++.. .. --.+.+....+... ...+ .++|.|.....
T Consensus 4 Llleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y-~~--K~~i~~~~l~i~e~----~~~d-~~~F~v~~~~~ 69 (97)
T cd01222 4 LLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY-QF--KAYIPCKNLMLVEH----LPGE-PLCFRVIPFDD 69 (97)
T ss_pred eeeeceEEeecC------CCceEEEEecccEEEEEecCCee-EE--EEEEEecceEEecC----CCCC-CcEEEEEecCC
Confidence 678997764443 23588888888899988544321 00 00122333333322 1223 68898877655
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+.+.|.|||.|.++.+.|+++|+.++
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 55789999999999999999999886
No 117
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=96.06 E-value=0.0001 Score=92.63 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=73.9
Q ss_pred eEEEeeeEee------cCCCCCCCCceEEEEEeCCeeEEecCCCCCCC----CCCcceeeecCCeeecCCcceeeecCCC
Q 003668 84 VFKSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP----QKGSEVNLTLGGIDLNNSGSVVVKADKK 153 (804)
Q Consensus 84 v~KEGyL~~~------kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p----~~g~e~~~~L~~~~l~~s~sV~~~~~Kk 153 (804)
..++|+||.+ ++..+.++|.+.||++..+.+.||+|.+.... ...++..+.+..+.+... .++++
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a-----~dy~k 2373 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVA-----SDYHK 2373 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHH-----HHHHH
Confidence 5789999863 34557899999999999999999999875432 233444455554443332 23444
Q ss_pred eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
..+++.+...+|..|.|+|.++++|..|++++..+..
T Consensus 2374 kk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2374 KKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4445555577899999999999999999999987764
No 118
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=95.91 E-value=0.0043 Score=77.46 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=123.8
Q ss_pred ccccchhHh-h--hcCCCCcHHHHH-HHHHHHHcCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCC---C-CCChhh
Q 003668 229 VIGRPILLA-L--EDVDGTPSFLEK-AIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFS---P-EEDAHI 297 (804)
Q Consensus 229 vFGvpLe~l-l--~~~~~VP~~l~~-~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~---~-~~d~h~ 297 (804)
++|+++..+ . .-....|.++.. |.......|....|+||..+....+...+..++.... .+- . ..++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 888888765 2 224457888888 7788888999999999999998899999888876421 111 1 224556
Q ss_pred hHHHHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCc-hHHH-------HHHHHHHHh----cCCh
Q 003668 298 IADCVKYVIREL--PSSPVPASCCNALL----------------EARRTDR-GSRV-------SAMRTAILE----TFPE 347 (804)
Q Consensus 298 vAslLK~fLReL--PePLlp~~l~~~~l----------------~a~~~~~-~~ri-------~~i~~lI~~----~LP~ 347 (804)
+.++++.|+|.+ |.+......|..|+ ....... .+++ ..+..+. . .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~-~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELA-RYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhh-ccCCCCCCH
Confidence 677999999999 99988888888888 3333444 5555 5666543 4 7999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccC-CCCc-chhhhhhcc----cccCCC
Q 003668 348 PNRKLLQRILMMMQTVASSKNQN-RMST-SAVAACMAP----LLLRPL 389 (804)
Q Consensus 348 ~Nr~lL~~Ll~~L~~V~~~s~~N-kMt~-~NLAv~FgP----tLlrp~ 389 (804)
....+|.++..|+.+|.....+| .|+. .||+.+|++ +++..+
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999999888 8887 999999999 566554
No 119
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=95.87 E-value=0.011 Score=54.85 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=62.9
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCee-ecCCcceeeecCCCeEEEEEecC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~-l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
++..||+.+.+ |++...|.+|||-|-++.|-+|-..... +++. +....+. +.. +. .......|-.+..+
T Consensus 3 cIvhGyi~KLG-GPFls~WQ~Ry~~LfPNRLE~~~~~~~~----~~eL-i~M~~i~~V~~-e~--~~iK~~~CI~ik~k- 72 (116)
T cd01240 3 CIVHGYIKKLG-GPFLSQWQTRYFKLYPNRLELYGESEAN----KPEL-ITMDQIEDVSV-EF--QQIKEENCILLKIR- 72 (116)
T ss_pred eEEeeehhhhC-CHHHHHHHHHHheeCcceeeeccccccc----CCcE-EEeehhhhcch-hh--eeeccCceEEEEEc-
Confidence 78899776554 4567899999999999999997543322 1222 1112111 110 00 12234456666654
Q ss_pred CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 163 ~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+++.|++++.++-+..+|..-|+.+-
T Consensus 73 -~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 73 -DEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred -CCceEEEecCCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999875
No 120
>PLN02866 phospholipase D
Probab=95.83 E-value=0.039 Score=68.50 Aligned_cols=104 Identities=18% Similarity=0.298 Sum_probs=64.2
Q ss_pred ceEEEeeeEeec-----C-CC------------CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeec-CCeeecCC
Q 003668 83 AVFKSGPLFISS-----K-GI------------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL-GGIDLNNS 143 (804)
Q Consensus 83 ~v~KEGyL~~~k-----K-g~------------~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L-~~~~l~~s 143 (804)
.-.||||+.++. + +. ...+|.|||||++.+.|.|.++..+..+. ..+.++. ........
T Consensus 181 ~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~--~v~lfD~~~~~~~~~~ 258 (1068)
T PLN02866 181 PKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL--DIIVFDVLPASNGNGE 258 (1068)
T ss_pred CCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee--EEEEEecccccccCCC
Confidence 356999888762 1 10 12569999999999999999776654321 0111111 00001111
Q ss_pred ccee------eecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhcc
Q 003668 144 GSVV------VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (804)
Q Consensus 144 ~sV~------~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~ 191 (804)
..+. ....-++.|.|... +|.+.|.+.|...+..|+.+|+.+...
T Consensus 259 ~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 259 GQISLAKEIKERNPLRFGFKVTCG---NRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred cceeecccccccCCCcceEEEecC---ceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 1110 11123556666654 688999999999999999999998743
No 121
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=95.55 E-value=0.0091 Score=68.71 Aligned_cols=94 Identities=24% Similarity=0.336 Sum_probs=61.0
Q ss_pred eEEEeeeEeecCCC---CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCccee-ee--c---CCCe
Q 003668 84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VK--A---DKKL 154 (804)
Q Consensus 84 v~KEGyL~~~kKg~---~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~-~~--~---~Kk~ 154 (804)
..-|| .+.+|++ +.+.|+-|||+|.+..|.|-|....... .-..|+++...+|. +. . .-+.
T Consensus 735 p~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpK 804 (851)
T KOG3723|consen 735 PLIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPK 804 (851)
T ss_pred chhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccch
Confidence 46677 4444444 5688999999999999999775432211 01123333333331 11 1 1123
Q ss_pred EEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.|+|+.. ..+|.|.|.++...++|++.++=+++
T Consensus 805 AFEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 805 AFEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred hhheeec---CceEEeecccccCHHHHHHHHHHHHH
Confidence 5777765 56799999999999999999997774
No 122
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.51 E-value=0.033 Score=65.13 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.++.|. ...+.|+.|.|||.++++|..||.+|+.+++
T Consensus 454 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFA--VAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEE--EEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 344444 4456799999999999999999999999884
No 123
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.26 E-value=0.19 Score=48.04 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=53.5
Q ss_pred eeeEeecCCC---CCCCCceEEEEEeCC--eeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeee----cCCCeEEE
Q 003668 88 GPLFISSKGI---GWTSWKKRWFILTHT--SLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV 157 (804)
Q Consensus 88 GyL~~~kKg~---~~ksWkKRWfVL~~~--sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~----~~Kk~~Fv 157 (804)
.|||+-.++. +..+.++|||-|... +|++....+... ...+..-.+.+..+.....+..... .+..++|.
T Consensus 13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~ 92 (123)
T PF12814_consen 13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSII 92 (123)
T ss_pred cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEE
Confidence 3777744433 346899999999986 455544332111 1000001122222211111110000 11234444
Q ss_pred EEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
|.. ++|++-|.|++.++.+-|+.+|+-.+
T Consensus 93 i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 93 IVT---PDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEc---CCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 443 37999999999999999999998766
No 124
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.21 E-value=0.009 Score=71.36 Aligned_cols=95 Identities=23% Similarity=0.375 Sum_probs=65.5
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCC
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~d 164 (804)
...|||+..=|.. ..|.|.|+|.+.-+|+|||+-.+..+. ..+.|-++.+..-.. .+..-|.+.|.+..+
T Consensus 925 qLsg~Llrkfkns--sgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk--- 994 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS--SGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK--- 994 (1036)
T ss_pred hhhHHHHHHhhcc--ccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---
Confidence 4557666433332 479999999999999999987765332 123333443332111 233457777777765
Q ss_pred CcEEEEEecchhhHHHHHHHHHHHh
Q 003668 165 GRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 165 grty~LQAdSeeE~~eWI~AI~~ai 189 (804)
..+|+|.|++.-....|+..|+.+.
T Consensus 995 ~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 995 SHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhhhhhhhhhHHHHhhcCC
Confidence 5689999999999999999999876
No 125
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=95.06 E-value=0.013 Score=68.82 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=59.6
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
..+.||+-.... ..+.|+|||||++.+.+.||+...+..-.......+.-+.+.+.. .--..|.++..
T Consensus 249 ~ekSgy~~~~~s--~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~~-- 316 (936)
T KOG0248|consen 249 MEKSGYWTQLTS--RIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLITS-- 316 (936)
T ss_pred hhcccchhcchH--HHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhhh--
Confidence 568886655443 347999999999999999999877543211111212111111111 22223333322
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
...|+|-++++.-..+|++.|+.+|.
T Consensus 317 -t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 -TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred -ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 46799999999999999999998773
No 126
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.88 E-value=0.33 Score=45.65 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=58.5
Q ss_pred eEEEeeeEeecCCCCCCCC-ceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeee---cCCCeEEEEE
Q 003668 84 VFKSGPLFISSKGIGWTSW-KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK---ADKKLLTVLF 159 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksW-kKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~---~~Kk~~FvI~ 159 (804)
.+++|-|.+.+.. +.| +.|++-|=++.|+|.|...-......--..+.+..+.|.....-... ..-++.|.|.
T Consensus 2 li~~Gel~~~s~~---~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQN---KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEecc---cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 4677866665531 123 57899999999999995431111000001134455554442100000 0125567777
Q ss_pred ecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 160 ~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
...+ +..|.|+|.|+++...||+|+..
T Consensus 79 ~~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SEST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 6532 46799999999999999999964
No 127
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.49 E-value=0.42 Score=46.08 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=56.8
Q ss_pred eEEEeeeEeecCCC------CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceee----ecCCeeecCCccee------
Q 003668 84 VFKSGPLFISSKGI------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL----TLGGIDLNNSGSVV------ 147 (804)
Q Consensus 84 v~KEGyL~~~kKg~------~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~----~L~~~~l~~s~sV~------ 147 (804)
..|.|.|.....+. ...+-+.+|+.|=.+.|.|.|.+.+. .+.+ ....+.+.......
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeeccccccccccc
Confidence 46888777643321 12245678999999999998754322 1222 12222222211000
Q ss_pred -eecCCCeEEEEEecC-CCC--cEEEEEecchhhHHHHHHHHH
Q 003668 148 -VKADKKLLTVLFPDG-RDG--RAFTLKAESLEDLYDWKTALE 186 (804)
Q Consensus 148 -~~~~Kk~~FvI~~~~-~dg--rty~LQAdSeeE~~eWI~AI~ 186 (804)
.....++.|.++.-. ..| +.+.|+|+|+.|+..||+||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 011346677776432 234 469999999999999999984
No 128
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.35 E-value=0.69 Score=43.88 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=59.2
Q ss_pred eEEEeeeEeecCCC-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeecCCCeEEEE
Q 003668 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTVL 158 (804)
Q Consensus 84 v~KEGyL~~~kKg~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~FvI 158 (804)
.+++|.+.+..... ..+.=+.|-+-|=...|+|-|.......-..+.+. +.+..+.+... ..+-.++|.|
T Consensus 5 Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~-----v~gd~~kF~i 79 (114)
T cd01232 5 LLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH-----VEGDPCRFAL 79 (114)
T ss_pred eEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc-----cCCCCceEEE
Confidence 56666555433322 12333566677777778887754322100111111 22333333221 2234566888
Q ss_pred EecCCC--CcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 159 FPDGRD--GRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 159 ~~~~~d--grty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
....++ ...|++||.|.+..+.|+..|+.++.
T Consensus 80 ~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 80 WSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred EeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 776553 47899999999999999999998763
No 129
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.78 E-value=0.3 Score=46.36 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=51.8
Q ss_pred CceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeec--CCCeEEEEEecCCCC-cEEEEEecc
Q 003668 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKA--DKKLLTVLFPDGRDG-RAFTLKAES 174 (804)
Q Consensus 102 WkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~--~Kk~~FvI~~~~~dg-rty~LQAdS 174 (804)
=+.||.-|=+.-+++.|...+.. +.+++. +.+..+.|....+- +.. ++++.+.+.+...+| ..|+|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~-d~~~~~~~~~~~f~L~~~~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSR-DTEGRDTRWKYGFYLAHKQGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCcc-CcccCCcceEEEEEEEecCCCccEEEEeCC
Confidence 35889888888899988654321 122222 22333333322111 111 334443333333444 679999999
Q ss_pred hhhHHHHHHHHHHHhc
Q 003668 175 LEDLYDWKTALENALA 190 (804)
Q Consensus 175 eeE~~eWI~AI~~ai~ 190 (804)
+++.+.||.|+..|+.
T Consensus 97 ee~K~kWm~al~~a~s 112 (116)
T cd01223 97 EHLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998884
No 130
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=93.76 E-value=0.081 Score=60.27 Aligned_cols=94 Identities=19% Similarity=0.325 Sum_probs=65.1
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecC
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~ 162 (804)
.+...|+|-+-.... ..|..||++|..+.|.||++..+. ..|+--.+.|....+... ..+ -..|.|...
T Consensus 23 w~e~~G~lskwtnyi--~gwqdRyv~lk~g~Lsyykse~E~--~hGcRgsi~l~ka~i~ah-----EfD-e~rfdIsvn- 91 (611)
T KOG1739|consen 23 WVERCGVLSKWTNYI--HGWQDRYVVLKNGALSYYKSEDET--EHGCRGSICLSKAVITAH-----EFD-ECRFDISVN- 91 (611)
T ss_pred chhhcceeeeeeccc--ccccceEEEEcccchhhhhhhhhh--hcccceeeEeccCCcccc-----cch-hheeeeEec-
Confidence 356778766655444 579999999999999999987654 234444455555555543 222 233555543
Q ss_pred CCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 163 ~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
..+.++.|.+...++.|+.+|.-.-
T Consensus 92 --~nv~~lra~~~~hr~~w~d~L~wmk 116 (611)
T KOG1739|consen 92 --DNVWYLRAQDPDHRQQWIDALEWMK 116 (611)
T ss_pred --cceeeehhcCcHHHHHHHHHHHHHh
Confidence 4678999999999999999998543
No 131
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.69 E-value=0.49 Score=42.92 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=50.2
Q ss_pred EEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecC-CcceeeecCCCeEEEEEecCC
Q 003668 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN-SGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 85 ~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~-s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
.+.|.++++++ . .|++|=++|++....||=|...... + +.|.+.. .-.+..... ..|.|..+
T Consensus 2 l~~g~v~Kr~g-l---f~kkR~LiLTd~PrL~yvdp~~~~~-K--------geIp~s~~~l~v~~~~~--~~F~I~Tp-- 64 (89)
T cd01262 2 LKIGAVKKRKG-L---FAKKRQLILTNGPRLIYVDPVKKVV-K--------GEIPWSDVELRVEVKNS--SHFFVHTP-- 64 (89)
T ss_pred ceeeeeeehhc-c---ccceeeEEEecCceEEEEcCCcCeE-E--------eEecccccceEEEEecC--ccEEEECC--
Confidence 57785544332 2 6899999999996666655542211 1 1122222 111111222 33455444
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+|+|+|. +-+.....|+.+|..+.
T Consensus 65 -~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 -NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred -CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 55689999999998753
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.30 E-value=0.35 Score=54.97 Aligned_cols=112 Identities=20% Similarity=0.313 Sum_probs=86.9
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC
Q 003668 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI 730 (804)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~ 730 (804)
..||+.|..+..+|. ||+.=+..|..+|.+|+....+-.+|-.-|+++++||+.|+++...|-..+.--.+.+
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl------ 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL------ 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 467888887777764 6777788899999999999988899999999999999999999999988776544433
Q ss_pred ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 003668 731 DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (804)
Q Consensus 731 ~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~ 769 (804)
-.....+=+.+...+..|..|+.++-+|-+.|..|-..+
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 222223334566778888889999999988887665553
No 133
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=93.27 E-value=0.027 Score=65.11 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=29.9
Q ss_pred eEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 154 ~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
+||.|+.. .|.++.|.|.+-+|++.|++||++.|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 48887753 478899999999999999999998773
No 134
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.18 E-value=0.021 Score=66.05 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=51.1
Q ss_pred HHHHHHHHhhcccCCCCcchhhhhhcccccCCCCCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 003668 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (804)
Q Consensus 357 l~~L~~V~~~s~~NkMt~~NLAv~FgPtLlrp~~~~~~~~e~d~~~~g~~s~ql~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (804)
+.||..|+.+.....|-+.|||+||||+|+|.++....-.+. .-|+ .|.+......-++++++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 368999999999999999999999999999977422111110 0011 2333344444568999999999998
Q ss_pred CC
Q 003668 437 EG 438 (804)
Q Consensus 437 e~ 438 (804)
..
T Consensus 72 ~~ 73 (670)
T KOG1449|consen 72 PT 73 (670)
T ss_pred Cc
Confidence 43
No 135
>PF15404 PH_4: Pleckstrin homology domain
Probab=92.77 E-value=0.7 Score=47.46 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=27.5
Q ss_pred EEeeeEeecCCCCCCCCceEEEEEeCCeeEEecC
Q 003668 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRS 119 (804)
Q Consensus 86 KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd 119 (804)
+.|+||.+.+++ ..|+++|+||..+.|+.|..
T Consensus 1 ~sG~LY~K~~kh--s~F~~~~vvL~~G~Li~f~~ 32 (185)
T PF15404_consen 1 MSGYLYQKPRKH--STFKKYFVVLIPGFLILFQL 32 (185)
T ss_pred CCceeeecCCCC--CCceEEEEEEeCCEEEEEEE
Confidence 469999877766 58999999999999998875
No 136
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=92.21 E-value=0.29 Score=59.22 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=63.2
Q ss_pred eEEEeeeEeecCC--------CCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeE
Q 003668 84 VFKSGPLFISSKG--------IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLL 155 (804)
Q Consensus 84 v~KEGyL~~~kKg--------~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~ 155 (804)
+...|+||..-.. ....--.++||||-++-|.||.+.+...|-+ .+.+.-..|...... .....-.+.
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~--lI~~~Eivclav~~p--d~~pn~~~~ 567 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG--LININEIVCLAVHPP--DTYPNTGFI 567 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc--eeeccceEEEeecCC--CCCCCcCce
Confidence 4555999973221 1234568999999999999999887654422 111111111111100 001122445
Q ss_pred EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHh
Q 003668 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai 189 (804)
|.+..-...+|.|+|-+++.++...|..||.+.-
T Consensus 568 f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf 601 (1186)
T KOG1117|consen 568 FIFEIYLPGERVFLFGLETADALRKWTEAIAKHF 601 (1186)
T ss_pred eEEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence 5554444568999999999999999999998765
No 137
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.76 E-value=0.63 Score=42.61 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=54.2
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCC--CCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEe
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSD--PSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~--~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~ 160 (804)
.+++|+|...-.|. =|.|=|.|=++-|+|-+-. .... .......-++|..+.+... .|.+.
T Consensus 3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH- 66 (96)
T ss_pred ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc-
Confidence 57899777655443 3666677777777775432 1111 1122222355554444322 12222
Q ss_pred cCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 161 DGRDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 161 ~~~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
.++++.|+|.|.|..|+.+|+.+|...
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 456899999999999999999999864
No 138
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=91.35 E-value=0.24 Score=57.88 Aligned_cols=97 Identities=18% Similarity=0.326 Sum_probs=63.3
Q ss_pred CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCccee----eecCCeeecCCcceeeecCCCeEEE
Q 003668 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTV 157 (804)
Q Consensus 82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~Fv 157 (804)
+..+|||.|++..-+ ..+-..||++|-..-+.|.+-..-. + +..+. +.+.++.+... +.......|.
T Consensus 270 reLiKEG~l~Kis~k--~~~~qeRylfLFNd~~lyc~~r~~~-~--~~k~~~r~~~s~~~~~v~~~----~~~~~~~tF~ 340 (623)
T KOG4424|consen 270 RELIKEGQLQKISAK--NGTTQERYLFLFNDILLYCKPRKRL-P--GSKYEVRARCSISHMQVQED----DNEELPHTFI 340 (623)
T ss_pred HHHhhccceeeeecc--CCCcceeEEEEehhHHHhhhhhhhc-c--cceeccceeeccCcchhccc----ccccCCceEE
Confidence 358999988876544 3578999999999888887654411 1 11111 22222221111 1223345566
Q ss_pred EEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 158 I~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
++.+ .+...|+|-|+++-++|+++|+.+|.
T Consensus 341 ~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 341 LTGK---KRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred Eecc---cceEEeecCchhhHHHHHHHHHHHHH
Confidence 6643 47789999999999999999999985
No 139
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.88 E-value=2.9 Score=44.68 Aligned_cols=70 Identities=31% Similarity=0.428 Sum_probs=58.1
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGL 717 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~e~~~~~~l~~~~ 717 (804)
.+||.|...+..|..+|...-+.=..+|+-+++=++++.....+ ||+.|.+++.-||+.++-..-++..+
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999876677777888888777766665554 78999999999999999999999888
No 140
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.81 E-value=3.7 Score=40.12 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=50.7
Q ss_pred ceEEEEEeCCeeEEecCCCCCCCCC-Cccee----eecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhh
Q 003668 103 KKRWFILTHTSLVFFRSDPSAIPQK-GSEVN----LTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED 177 (804)
Q Consensus 103 kKRWfVL~~~sL~yYKd~~~~~p~~-g~e~~----~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE 177 (804)
+.|++-|=...++|.|-..+..... .+.+. +.+..+.+... ..+-.++|.|....+. ..|+|||.|.+.
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~-----v~gd~~kFeiw~~~~~-~~yilqA~t~e~ 103 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITEN-----VKGDTKKFEIWYNARE-EVYILQAPTPEI 103 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccccccc-----CCCCccEEEEEeCCCC-cEEEEEcCCHHH
Confidence 5688888888888887653221100 11121 11222222221 1223556788776553 689999999999
Q ss_pred HHHHHHHHHHHhc
Q 003668 178 LYDWKTALENALA 190 (804)
Q Consensus 178 ~~eWI~AI~~ai~ 190 (804)
...|+..|...+.
T Consensus 104 K~~Wv~~I~~iL~ 116 (133)
T cd01227 104 KAAWVNEIRKVLT 116 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999873
No 141
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=90.64 E-value=0.66 Score=45.25 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHH
Q 003668 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 152 Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
..+.|.|..-++.|..|+|.|+|+.+++.|++.|.++
T Consensus 98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4455666667777788999999999999999999864
No 142
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=90.50 E-value=1 Score=41.65 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=30.3
Q ss_pred ecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 149 ~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
..++.+.|++.. .++..|.|.|.++++|+.|+..|+.
T Consensus 70 mPD~~nTFvLK~--~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 70 MPDNLYTFVLKV--DDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccCcccEEEEEe--cCCceEEEEcCCHHHHHHHHHHHhc
Confidence 446777777765 4567899999999999999999974
No 143
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=90.04 E-value=0.77 Score=47.44 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=49.6
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CCCCCChhhHHHHhhhhhhhhHHH
Q 003668 672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IPDTIDEKTKVELGEIAQAETDII 749 (804)
Q Consensus 672 ~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~e~~~~ 749 (804)
+.|||--|||-+.=+.-|..||+|++.|+-|=.. |.... +..+ ....|-...++-=|-|-.+|||++
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~----------~~~~~-~~~~~~~~~~L~~~LrEkEErILaLEad~~ 81 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ----------GNSSG-SSSPSNNASNLKELLREKEERILALEADMT 81 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998888899999999988766322 11111 1111 122233344444466999999999
Q ss_pred HHHHHH
Q 003668 750 NLKQKA 755 (804)
Q Consensus 750 ~l~~~~ 755 (804)
|.|||-
T Consensus 82 kWEqkY 87 (205)
T PF12240_consen 82 KWEQKY 87 (205)
T ss_pred HHHHHH
Confidence 999985
No 144
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=89.29 E-value=1.2 Score=38.53 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 688 RRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 688 ~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
+|..+++-+..|+.+|++|...|..+|+-+......- .+ ..++.|+.-+..-.+|+.-|+.+|-.
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~---------~~---~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEK---------KK---KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------Cc---cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999875532211 11 56677888888899999999999865
No 145
>PF15406 PH_6: Pleckstrin homology domain
Probab=88.99 E-value=0.67 Score=43.43 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.5
Q ss_pred EEEEEecCCCCcEEEEEecchhhHHHHHHHHHH
Q 003668 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 155 ~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
.|.|... |...+|+|.+..||+.|+.+|..
T Consensus 82 kF~f~~~---G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 82 KFHFKIK---GHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred eEEEEeC---CceeeeecCCHHHhccHHHHhhc
Confidence 3445544 88899999999999999999863
No 146
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=88.62 E-value=0.12 Score=60.14 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=92.9
Q ss_pred CCccccchhHhh-hcCCCCcH-HHHHHHHHHHH---c-C-CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhH
Q 003668 227 FPVIGRPILLAL-EDVDGTPS-FLEKAIRFIEE---H-G-VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIA 299 (804)
Q Consensus 227 ~~vFGvpLe~ll-~~~~~VP~-~l~~~i~~Le~---~-G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA 299 (804)
...||.-|..+. .-++.||. .+.+|+..+.. + + ....|+|+++.+.... .+...+....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 344554443222 22566777 77777766655 2 2 3445777776542211 1112233345889999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHhcCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhcccCCCCcchh
Q 003668 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (804)
Q Consensus 300 slLK~fLReLPePLlp~~l~~~~l~a~~~~~--~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V~~~s~~NkMt~~NL 377 (804)
.+++.|.|.+|.|+.. .++...+ .+.+...+-.+ ...++.|+.+-+.|..||...+.-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~-~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSL-ETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecccc-ccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999444 2333333 55566665544 4899999999999999998777633 899
Q ss_pred hhhhcccccCCCC
Q 003668 378 AACMAPLLLRPLL 390 (804)
Q Consensus 378 Av~FgPtLlrp~~ 390 (804)
+|++.|+++|++.
T Consensus 343 ~I~~~~~~~r~pp 355 (670)
T KOG1449|consen 343 AIVWSPNLFRPPP 355 (670)
T ss_pred eeecCCCCCCCCC
Confidence 9999999999874
No 147
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.28 E-value=2.6 Score=45.45 Aligned_cols=115 Identities=19% Similarity=0.404 Sum_probs=60.2
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhc-c--hhHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKG-N--EILEAS-LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG 722 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~ 722 (804)
...|+++-..+..|+.+|.+.+.. + ..+... +......+..|-..|.+.+.++++++++.+..-..+...|.....
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888776550 1 111111 112222334444457777777777777777766666666655444
Q ss_pred CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 723 SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.++ ......+...+.+..+...+..+++++..|+.++..
T Consensus 106 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 106 RLS---ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 111222333333444444444455554444444443
No 148
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.60 E-value=3.1 Score=39.24 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=54.8
Q ss_pred CceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhHHH
Q 003668 102 WKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYD 180 (804)
Q Consensus 102 WkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~e 180 (804)
=..||++|=...|.+..-.+... -.. .-.++|.++.++.. .+....++.|.|.-.. --...+.+.+.+|+.+
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sGf~y--qGkLPL~~i~v~~l---Ed~e~~~~aFeI~G~l--i~~i~v~C~~~~e~~~ 100 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSGFIY--QGKLPLTGIIVTRL---EDTEALKNAFEISGPL--IERIVVVCNNPQDAQE 100 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccceEE--eeeecccccEEech---HhccCccceEEEeccC--cCcEEEEeCCHHHHHH
Confidence 46789999999998887533111 000 11256777777653 2344567888887443 2357888999999999
Q ss_pred HHHHHHHHh
Q 003668 181 WKTALENAL 189 (804)
Q Consensus 181 WI~AI~~ai 189 (804)
|+..++..+
T Consensus 101 Wl~hL~~~~ 109 (111)
T cd01225 101 WVELLNANN 109 (111)
T ss_pred HHHHHHhhc
Confidence 999998754
No 149
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.25 E-value=35 Score=42.11 Aligned_cols=47 Identities=40% Similarity=0.456 Sum_probs=23.8
Q ss_pred hcchhHhhhHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHhHHHHHHh
Q 003668 669 KGNEILEASLESRKKAL---------HERRLALENDV-ARLKDQLQKERDKRTAMEA 715 (804)
Q Consensus 669 ~~~~~~~~~~~~~~~~~---------~~~r~~le~~v-~~l~~~l~~e~~~~~~l~~ 715 (804)
+.|.-||..+-.-.+++ =|+|++-|++- ..|..||++||.-|..-|.
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667776443333322 24444444443 2355677777765554443
No 150
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.85 E-value=4.9 Score=37.39 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred EEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHH
Q 003668 105 RWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTA 184 (804)
Q Consensus 105 RWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~A 184 (804)
..+.|=.+.|+|-.-.... ...-.-...|..+.+... .+...-+.+|.|... .+.+.+||+|+++..+||..
T Consensus 22 v~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni---~D~~~~kNafki~t~---~~s~i~qaes~~~K~eWl~~ 93 (100)
T cd01226 22 VMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNV---KDRENAKKVLKLLIF---PESRIYQCESARIKTEWFEE 93 (100)
T ss_pred EEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEec---CCCcCcCceEEEEeC---CccEEEEeCCHHHHHHHHHH
Confidence 4355555666654321111 111122345555544332 223345667777654 57799999999999999999
Q ss_pred HHHHh
Q 003668 185 LENAL 189 (804)
Q Consensus 185 I~~ai 189 (804)
|+++.
T Consensus 94 le~a~ 98 (100)
T cd01226 94 LEQAK 98 (100)
T ss_pred HHHHh
Confidence 99875
No 151
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=82.97 E-value=0.88 Score=55.79 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=56.0
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~ 163 (804)
...+|||++.... .+.|.+|||+|.++.+.||++.......-+++... ....+. ...+.-+... ...
T Consensus 77 ~~~~g~l~k~~n~--~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~--~~a~i~--------~~~~~~~~~~-~~~ 143 (799)
T KOG1737|consen 77 ASLEGILLKWRNY--SKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINL--VTAWIQ--------NGERMDICSV-DGS 143 (799)
T ss_pred ccccceeeccccc--cCCcccceEEecCcceeeeccCCccccCCCCcccc--cccccc--------cCCCcccchh-hcc
Confidence 4578977765443 47999999999999999999876543211111111 111111 1112111111 111
Q ss_pred CCcEEEEEecchhhHHHHHHHHHHH
Q 003668 164 DGRAFTLKAESLEDLYDWKTALENA 188 (804)
Q Consensus 164 dgrty~LQAdSeeE~~eWI~AI~~a 188 (804)
-..|...+.+...+..|+.++.-+
T Consensus 144 -~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 -CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred -cchhhhhhhHHHhhcchhhhhhhc
Confidence 356888999999999999999876
No 152
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.20 E-value=0.027 Score=62.23 Aligned_cols=118 Identities=22% Similarity=0.312 Sum_probs=78.3
Q ss_pred hhhhhcchHHHHH---HHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-
Q 003668 650 IQRLEDTKSDLQR---KIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNG- 722 (804)
Q Consensus 650 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~- 722 (804)
.+-|++.+.+|+- .-....-+||-|-..||.|.+||..|-.. |-.--..|...|-+|+.--..|-.|=.+-.|
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGs 499 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGS 499 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCC
Confidence 3455666666653 44666778999988999999999877543 4444567888899998765556566555544
Q ss_pred CCCCCCCCChhhHHHHhhh-hhhhhHHHHHHHHHHHHHHHHH-HHhhhccCC
Q 003668 723 SFPIPDTIDEKTKVELGEI-AQAETDIINLKQKAKDLRVQLS-EQLEKNDGF 772 (804)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~i-~~~e~~~~~l~~~~~~l~~~l~-~~~~~~~~~ 772 (804)
+++ ..|.--+||=+ -.-|..|.-|||+|..|...|. -+|...|.|
T Consensus 500 pla-----qgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaS 546 (593)
T KOG4807|consen 500 PLA-----QGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYAS 546 (593)
T ss_pred ccc-----cCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 221 12222344432 3457788899999999998874 356666654
No 153
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=82.06 E-value=2.7 Score=46.57 Aligned_cols=107 Identities=18% Similarity=0.296 Sum_probs=69.0
Q ss_pred CCCceEEEeeeEeecCC-CCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCC--eeecCCcceeeecCCCeE
Q 003668 80 AGNAVFKSGPLFISSKG-IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGG--IDLNNSGSVVVKADKKLL 155 (804)
Q Consensus 80 ~~~~v~KEGyL~~~kKg-~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~--~~l~~s~sV~~~~~Kk~~ 155 (804)
.+.++..-||..-...+ ..+.+++.+|..|++.+++.|..++-.. .+...+.+..+-. |.|-.. ....+.+++|
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~D~R~~C 354 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTVDSRQHC 354 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--ccccccccce
Confidence 34468889966544433 3677889999999999999998765321 1111111111111 111110 0123468899
Q ss_pred EEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 156 FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
|.+... .|...+|..+.+.|+..|-.+.+.|+.
T Consensus 355 F~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 988753 577899999999999999999998773
No 154
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.08 E-value=8 Score=42.39 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=40.1
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003668 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALH----------ERRLALENDVARLKDQLQKERDKRTAMEA 715 (804)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~r~~le~~v~~l~~~l~~e~~~~~~l~~ 715 (804)
..++..-.+|+..|..-++.|+.|+..+..-+.++. ..|..||.++..|+++|..++..|..|++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 345555566777777777777777766554444333 33445666666667677766666666665
No 155
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=79.99 E-value=22 Score=37.03 Aligned_cols=109 Identities=19% Similarity=0.304 Sum_probs=77.8
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILE---------------ASLESRKKALHERRLALENDVARLKDQLQKERDKRTA- 712 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~- 712 (804)
+-+|=|.+...|+.|+-+|++.=..-| ..|-++.+.-.|+=++||-||.+.+..--+|-.+|-+
T Consensus 18 a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a 97 (205)
T PF12240_consen 18 ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888874321111 2366777788899999999999999999999999854
Q ss_pred HHhh-----------hcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 713 MEAG-----------LGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 713 l~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
+++| ++++.. ...++.- ...++|..+..-+..||..+..||.||.
T Consensus 98 ~dAaa~aa~~rdttiI~~s~~-----~s~~~s~-r~~eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 98 MDAAATAAAQRDTTIINHSPS-----ESYNSSL-REEEELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHhhhHHHHHHHHHhcCCC-----CCCCccc-cchHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3222 222222 1222222 6789999999999999999999999875
No 156
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.13 E-value=4.3 Score=45.03 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=38.2
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (804)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l 703 (804)
.++...+|+.|..+|+-.+-.+|++|.||++.|.+=-..|+..+.+|..|+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~ 262 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQL 262 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999866555544444444444443
No 157
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.11 E-value=22 Score=42.21 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=75.1
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 003668 646 NEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRK------KALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~ 719 (804)
++..-.||+.-.+.+-..|+.=-+.|+.|-+.++.|+ +-|.+++.+|+.||-++|.-+-.=.....+
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------- 291 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------
Confidence 3344567777777777777766677777766666554 467778888888888777655444443333
Q ss_pred CCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003668 720 FNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (804)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~ 765 (804)
++.+...+=+||+..|-.+..|++++++|+.|+.-|
T Consensus 292 ----------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ----------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666677899999999999999999999999776
No 158
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=77.94 E-value=5.8 Score=36.18 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHH------HHHhHHHHHHhhhc
Q 003668 689 RLALENDVARLKDQLQ------KERDKRTAMEAGLG 718 (804)
Q Consensus 689 r~~le~~v~~l~~~l~------~e~~~~~~l~~~~~ 718 (804)
...|+++.++||+||. .||==|.||++||.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4678899999999985 47888999999983
No 159
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.40 E-value=69 Score=39.63 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=15.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 735 KVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 735 ~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
+.|...|+.+|--+.....+-..|..||..+|
T Consensus 484 q~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 484 QQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444555555444
No 160
>PRK09039 hypothetical protein; Validated
Probab=75.86 E-value=15 Score=41.34 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=11.1
Q ss_pred hhhhhhcchHHHHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIAD 666 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~ 666 (804)
+|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 355566666667777754
No 161
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=74.90 E-value=0.59 Score=55.24 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=40.5
Q ss_pred eEEEeeeEeecCCC-CCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCc
Q 003668 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG 144 (804)
Q Consensus 84 v~KEGyL~~~kKg~-~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~ 144 (804)
-..+||||+.+.-+ +...|+|.||||.+..|+.|.......+ +..+.|....|..+.
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~----e~~i~l~~~~i~~a~ 619 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAA----ESVIKLPLFTISVAE 619 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhch----hheeeccchhhhhHH
Confidence 35678999877654 4568999999999999999998765432 344555555555443
No 162
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=74.89 E-value=2.2 Score=47.92 Aligned_cols=107 Identities=23% Similarity=0.280 Sum_probs=64.4
Q ss_pred ceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCC-CCCCcceeeecCCeeecCCcce--eeecCCCeEEEEE
Q 003668 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLF 159 (804)
Q Consensus 83 ~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~-p~~g~e~~~~L~~~~l~~s~sV--~~~~~Kk~~FvI~ 159 (804)
.+..-|||-.+-++.+...|+..+++|+...|.+|..-+... .+..+-..-.|-...+..+++- .....-...|...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~R 370 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATR 370 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEe
Confidence 466779888777777788999999999999999998755321 0111111111111111111110 0111112345555
Q ss_pred ecCCCC-cEEEEEecchhhHHHHHHHHHHHh
Q 003668 160 PDGRDG-RAFTLKAESLEDLYDWKTALENAL 189 (804)
Q Consensus 160 ~~~~dg-rty~LQAdSeeE~~eWI~AI~~ai 189 (804)
+.++.| .+|+|.+++..|+-.|..+|-.-.
T Consensus 371 tGTrqGV~thlfrvEThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 371 TGTRQGVETHLFRVETHRELAAWTRSLVQGC 401 (506)
T ss_pred cccccceEEEEEEeccHHHHHHHHHHHHHHH
Confidence 544444 589999999999999999886533
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.44 E-value=26 Score=36.69 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=20.5
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 733 ~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
..+++-++++.+.+.+..|+++..++...+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667776777777777665543
No 164
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=73.25 E-value=1.7 Score=49.93 Aligned_cols=31 Identities=13% Similarity=-0.037 Sum_probs=27.7
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCee
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSL 114 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL 114 (804)
..|.|+++.+..+.+.+.|.+.|++|..+.+
T Consensus 8 ~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~ 38 (429)
T KOG4047|consen 8 LVKDGVPDNHRNKFKVKNVRDDGAELGSGSM 38 (429)
T ss_pred ccccCccchhhhhhccccccccceeeecccc
Confidence 5799999999988888999999999998853
No 165
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.39 E-value=42 Score=36.12 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 003668 736 VELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGF 772 (804)
Q Consensus 736 ~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~ 772 (804)
....++...+..+..|++++..-+.+|.++...-|.-
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445666667777778888888888888877665554
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.41 E-value=17 Score=43.16 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHh
Q 003668 689 RLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELG 739 (804)
Q Consensus 689 r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 739 (804)
+..+++++..|++||+.-.+.-.|-+.-...-...++++..+-++|.++|-
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh 328 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELH 328 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887776666555554444455555555566666664
No 167
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.97 E-value=39 Score=40.33 Aligned_cols=99 Identities=28% Similarity=0.369 Sum_probs=64.5
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhc------ch--------hHhhh---HHHHHHHHHH-------HHHHHHHHHHHHHH
Q 003668 646 NEVEIQRLEDTKSDLQRKIADEVKG------NE--------ILEAS---LESRKKALHE-------RRLALENDVARLKD 701 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~~---~~~~~~~~~~-------~r~~le~~v~~l~~ 701 (804)
=|..|-||+.--.+|+.+..|-.|+ +. .|||. +-+|.+++.+ -=..|..++++++.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4667777877777787777554332 21 13332 3345443332 22236667778888
Q ss_pred HHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 702 QLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 702 ~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
||.+|+-||.-+++ +.|.+|++|+.+... =++++.+++....+
T Consensus 191 ~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~~---h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 191 QLDDETLLRVDLQN-----------------RVQTLLEELAFLKRI---HKQEIEEERRKARR 233 (546)
T ss_pred HHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHhc---cHHHHHHHHHHHhh
Confidence 99999999998887 778888888887765 56677766665544
No 168
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=68.93 E-value=12 Score=34.11 Aligned_cols=46 Identities=33% Similarity=0.608 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH------HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhh
Q 003668 691 ALENDVARLKDQLQ------KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQ 743 (804)
Q Consensus 691 ~le~~v~~l~~~l~------~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 743 (804)
.+..++++||+||. .||==|.||.+||..- .-=|...++.+++||.
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgei-------eI~d~eL~~aFeeiAa 58 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRIALKAGLGEI-------EIEEAELQAAFEELAK 58 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-------ccCHHHHHHHHHHHHH
Confidence 45566777777774 5888999999999431 2234455666777663
No 169
>PRK11637 AmiB activator; Provisional
Probab=68.79 E-value=26 Score=40.41 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=23.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccC
Q 003668 735 KVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDG 771 (804)
Q Consensus 735 ~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~ 771 (804)
.+.=.+|+.++.++..++.++..+..+|.+...-.|-
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666667777777777777777666555554
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.59 E-value=59 Score=40.37 Aligned_cols=109 Identities=21% Similarity=0.392 Sum_probs=60.0
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hhcCCC
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK---ALHERRLALENDVARLKDQLQKERDKRTAMEA----GLGEFN 721 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~----~~~~~~ 721 (804)
-|+|++.++.++|.|+. .|++..++.-+ .+.++|..|.+.-++|.+.+..=++.+..|.. -|....
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777777777764 23333333222 34444555555555555544433333333332 222222
Q ss_pred CCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 722 GSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 722 ~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
.+++. +-..-++.-+|+-.+...+-.|+..+..+..+++.|+.
T Consensus 625 ~~~P~---LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQLPV---LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred ccCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33344566666667777788899999999888886543
No 171
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.41 E-value=26 Score=43.63 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 003668 690 LALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (804)
Q Consensus 690 ~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~ 769 (804)
..+|+.+..||.||..=.+...++|.+|.-... .-+.+-.-...+|+.+..|..|+..|..+|-.+|+-+
T Consensus 627 ~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e----------~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~ 696 (769)
T PF05911_consen 627 KESEQKLEELQSELESAKESNSLAETQLKAMKE----------SYESLETRLKDLEAEAEELQSKISSLEEELEKERALS 696 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999998854222 1122233344568888889999999999998888765
Q ss_pred cC
Q 003668 770 DG 771 (804)
Q Consensus 770 ~~ 771 (804)
-.
T Consensus 697 ~e 698 (769)
T PF05911_consen 697 EE 698 (769)
T ss_pred hh
Confidence 43
No 172
>PF15411 PH_10: Pleckstrin homology domain
Probab=68.01 E-value=51 Score=31.45 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCC---------CCcceeeecCC-eeecCCcceeeec-CC
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ---------KGSEVNLTLGG-IDLNNSGSVVVKA-DK 152 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~---------~g~e~~~~L~~-~~l~~s~sV~~~~-~K 152 (804)
...-|-+.+.+. ..|+-++|-|=..-|.++|..+..... ....-.+.|+| |-+.....|.... ..
T Consensus 7 Lll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g 82 (116)
T PF15411_consen 7 LLLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPG 82 (116)
T ss_pred eEEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCC
Confidence 344554554432 469999999999999999876543221 11222344443 5555555443222 22
Q ss_pred CeEEEEEec-CCCCcEEEEEecchhhHHHHHHHH
Q 003668 153 KLLTVLFPD-GRDGRAFTLKAESLEDLYDWKTAL 185 (804)
Q Consensus 153 k~~FvI~~~-~~dgrty~LQAdSeeE~~eWI~AI 185 (804)
.+...|.-. ...--.|+|...+++.|+.|-.+|
T Consensus 83 ~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 83 SYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred ceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 333344432 223457999999999999998875
No 173
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.62 E-value=53 Score=38.28 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 003668 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLG 718 (804)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~ 718 (804)
++.++.|.+.+.....++.+.+..++++++.=..+..+++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTK 203 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566677777777777888888888888777777777777653
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.29 E-value=44 Score=37.73 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQL 703 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l 703 (804)
+++.....++..++.++.|+
T Consensus 148 ~l~~~i~~~~~~i~~~~~~l 167 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQAQL 167 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333
No 175
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.68 E-value=41 Score=34.22 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=45.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHhhhcCCCCCCC-CCCCCChhhHHHHhhhhhhhhHHHHH
Q 003668 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDK-RTAMEAGLGEFNGSFP-IPDTIDEKTKVELGEIAQAETDIINL 751 (804)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~-~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~e~~~~~l 751 (804)
+|.+-+..-.+++..+-.|..||..|+.+|.+|+.. ++-+.--++.-.+... ....++.+.++.= .-++.+|++|
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~---~ki~~ei~~l 143 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELN---NKIDTEIANL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 333333333466777777999999999999998753 2222222222222110 0011222221111 2234556667
Q ss_pred HHHHHHHHHHHHH
Q 003668 752 KQKAKDLRVQLSE 764 (804)
Q Consensus 752 ~~~~~~l~~~l~~ 764 (804)
+-++..+.+++.+
T Consensus 144 r~~iE~~K~~~lr 156 (177)
T PF07798_consen 144 RTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
No 176
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=66.17 E-value=42 Score=37.11 Aligned_cols=134 Identities=22% Similarity=0.176 Sum_probs=91.8
Q ss_pred CCcCCCCCCchhhhhhhhhcch--HHHHHHHHHhhhcch--hHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--H
Q 003668 636 SMESIDGPSDNEVEIQRLEDTK--SDLQRKIADEVKGNE--ILEASLESRKKALHERRLALE---NDVARLKDQLQK--E 706 (804)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~le---~~v~~l~~~l~~--e 706 (804)
.-|.=|.|+---++|+-=|+++ .++|-.++.+||.|= -||-.-..--+++|..|--|| .|-.-+..+-+| |
T Consensus 96 gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~d 175 (366)
T KOG1118|consen 96 GKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKD 175 (366)
T ss_pred HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCh
Confidence 3455566666777888777776 588999999999995 477774444455555555554 234445556666 8
Q ss_pred HhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hcc-CCCCCC
Q 003668 707 RDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE---------KND-GFVGDS 776 (804)
Q Consensus 707 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~---------~~~-~~~~~~ 776 (804)
-+||.|||.= =-++..++-.=++++|.||....|=++-++.||+=.|| .+. .-+.|+
T Consensus 176 EelrqA~eKf-------------EESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a 242 (366)
T KOG1118|consen 176 EELRQALEKF-------------EESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDA 242 (366)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8999999871 12355677777899999999999998888888875554 222 335566
Q ss_pred cccccc
Q 003668 777 SNQLHQ 782 (804)
Q Consensus 777 ~~~~~~ 782 (804)
.+++++
T Consensus 243 ~~~prr 248 (366)
T KOG1118|consen 243 SSQPRR 248 (366)
T ss_pred hcCchh
Confidence 666554
No 177
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.92 E-value=21 Score=40.71 Aligned_cols=71 Identities=28% Similarity=0.351 Sum_probs=48.3
Q ss_pred hhhhhcchHHHHHHHHHhh------------------------hcchhHhhhHHHHHHH-----------HHHHHH---H
Q 003668 650 IQRLEDTKSDLQRKIADEV------------------------KGNEILEASLESRKKA-----------LHERRL---A 691 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-----------~~~~r~---~ 691 (804)
|++||..|.-||.++..+| .-=.+|||.+||=+.. +..||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888888888873322 1123689999886542 222332 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 003668 692 LENDVARLKDQLQKERDKRTAMEAGLGEF 720 (804)
Q Consensus 692 le~~v~~l~~~l~~e~~~~~~l~~~~~~~ 720 (804)
.+.+-+|||.-|+.|.+.|.||=.-|+.+
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~lsEs 318 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLSES 318 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55677899999999999998886655443
No 178
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=64.07 E-value=1.2e+02 Score=33.28 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=48.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHH
Q 003668 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753 (804)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~ 753 (804)
++++...+.+++...+.+|++++..++.++.+-..-...=..|- .-+...+--...+.--+.+..+++.+..|..
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666655555554444333333333 2233344455667777777777777777777
Q ss_pred HHHHHHHHHH
Q 003668 754 KAKDLRVQLS 763 (804)
Q Consensus 754 ~~~~l~~~l~ 763 (804)
+..+...+|.
T Consensus 204 ~~~~~~~~l~ 213 (301)
T PF14362_consen 204 QIDAAIAALD 213 (301)
T ss_pred hHHHHHHHHH
Confidence 7666666665
No 179
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.61 E-value=1.1 Score=52.28 Aligned_cols=87 Identities=15% Similarity=0.286 Sum_probs=54.0
Q ss_pred CCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecchhhH
Q 003668 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (804)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~ 178 (804)
.|..+|+||.++.-.+.+|++..+.. ..+...+.+.+|.+.....+....+.++| +.+....-..+++.+++|...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l--~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKL--LVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEE--EeecCCccceeEEecCCHHHH
Confidence 45567777777666555544332221 22334577888887765433333444444 444333356899999999999
Q ss_pred HHHHHHHHHHh
Q 003668 179 YDWKTALENAL 189 (804)
Q Consensus 179 ~eWI~AI~~ai 189 (804)
..||.|-+-|.
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999998654
No 180
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=63.46 E-value=57 Score=38.84 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=68.1
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 003668 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKK---ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (804)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~ 728 (804)
-|-+.|+||-.++..=--+|.|||-.||.||+ .|.++=..||.++++++..+..- .+.+++. ...
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a--r~~~~~~----------e~d 386 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA--RQKAKDD----------EDD 386 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccc----------ccc
Confidence 36678999999998888899999999999999 47777788888888887655332 2332222 445
Q ss_pred CCChhhHHHHhhhhhh--hhHHHHHHHHHHHHHHH
Q 003668 729 TIDEKTKVELGEIAQA--ETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 729 ~~~~~~~~~l~~i~~~--e~~~~~l~~~~~~l~~~ 761 (804)
.||--.+.-..-+-++ =-+-..-|.++++|+.-
T Consensus 387 diPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEa 421 (832)
T KOG2077|consen 387 DIPMAQRKRFTRVEMARVLMERNQYKERLMELQEA 421 (832)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6777766666544332 23344577888888754
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.43 E-value=1.4e+02 Score=28.87 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=16.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 735 KVELGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 735 ~~~l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
+.+-.+|..++..+..|..+=.-||-||
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666665
No 182
>PRK09039 hypothetical protein; Validated
Probab=62.62 E-value=78 Score=35.75 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhc
Q 003668 695 DVARLKDQLQKERDKRTAMEAGLG 718 (804)
Q Consensus 695 ~v~~l~~~l~~e~~~~~~l~~~~~ 718 (804)
+|.+|+.|+..=|.-.++|+.+|.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444555555443
No 183
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.55 E-value=66 Score=38.69 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=53.1
Q ss_pred hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 003668 668 VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (804)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (804)
-..|..|++.|++-|+.....+..|++=-.+....+++.+.+++ .-.+|..+|..
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~-------------------------~~~~I~~L~~~ 489 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRA-------------------------RDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------------------------HHHHHHHHHHH
Confidence 35678999999999988888888887777777766776666654 34556666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 003668 748 IINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 748 ~~~l~~~~~~l~~~l~~~~~~ 768 (804)
+.+-+.++..|...|++-++.
T Consensus 490 L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 490 LEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 184
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.80 E-value=72 Score=30.71 Aligned_cols=76 Identities=29% Similarity=0.476 Sum_probs=39.8
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCC
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDT 729 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~ 729 (804)
+.+|+..|..|...|.+=.+.|.-++ +...+--.|+++++.|+...+ ++|+-
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~--------~~~~~~~~L~~el~~l~~ry~------t~Lel-------------- 90 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELR--------ALKKEVEELEQELEELQQRYQ------TLLEL-------------- 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH------HHHHH--------------
Confidence 45555555555555555455554442 233334456666666655443 22221
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 003668 730 IDEKTKVELGEIAQAETDIINLKQKAKD 757 (804)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~~~~l~~~~~~ 757 (804)
+-+| -|++--+++||..||.-...
T Consensus 91 lGEK----~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 91 LGEK----SEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred hcch----HHHHHHHHHHHHHHHHHHHH
Confidence 2222 25566678888888876543
No 185
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.65 E-value=1.5e+02 Score=38.32 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhh-hhhhhhHHHHH--
Q 003668 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGE-IAQAETDIINL-- 751 (804)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~~e~~~~~l-- 751 (804)
+..|.+|-..|.-++.-|+-+|+++-.+++....--+.+|+++ .....|.+...+|++ |+.++..|-.|
T Consensus 808 ~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~--------~k~~~d~~~l~~~~~~ie~l~kE~e~~qe 879 (1293)
T KOG0996|consen 808 VRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV--------LKKVVDKKRLKELEEQIEELKKEVEELQE 879 (1293)
T ss_pred HHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777788888888776666666666677663 224566677777777 77777666666
Q ss_pred ---H-HHHHHHHHHH
Q 003668 752 ---K-QKAKDLRVQL 762 (804)
Q Consensus 752 ---~-~~~~~l~~~l 762 (804)
| +++..||..+
T Consensus 880 ~~~Kk~~i~~lq~~i 894 (1293)
T KOG0996|consen 880 KAAKKARIKELQNKI 894 (1293)
T ss_pred hhhHHHHHHHHHHHH
Confidence 3 6666666554
No 186
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.44 E-value=77 Score=35.37 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQ 702 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~ 702 (804)
++.+++.+|+.++.+|+..
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555443
No 187
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=61.12 E-value=3.5 Score=45.76 Aligned_cols=29 Identities=38% Similarity=0.789 Sum_probs=21.7
Q ss_pred ceEEEeeeEeecCC---CCCCCCceEEEEEeC
Q 003668 83 AVFKSGPLFISSKG---IGWTSWKKRWFILTH 111 (804)
Q Consensus 83 ~v~KEGyL~~~kKg---~~~ksWkKRWfVL~~ 111 (804)
.++|+|+|.++..| .+++.||||||.|+.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 37999988874432 256789999999873
No 188
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.94 E-value=45 Score=37.20 Aligned_cols=97 Identities=28% Similarity=0.343 Sum_probs=48.5
Q ss_pred hhcchhHhhhH---HHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHhhhcCCCCCCCCCCCC
Q 003668 668 VKGNEILEASL---ESRKK-------ALHERRLALENDVARLKDQLQ-------KERDKRTAMEAGLGEFNGSFPIPDTI 730 (804)
Q Consensus 668 ~~~~~~~~~~~---~~~~~-------~~~~~r~~le~~v~~l~~~l~-------~e~~~~~~l~~~~~~~~~~~~~~~~~ 730 (804)
+|.+|-|||.- |-|.+ .|.+.+..|.+|.+.|.++++ +=++.+++|+.-+..-..-...+...
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~ 206 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC 206 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 68888888752 33433 555555555555555554443 33444555555442221111112222
Q ss_pred -ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 731 -DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 731 -~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
+....+.=.+|+...++|..+++++.+|..+|.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~ 241 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEE 241 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444455666666666555555555555543
No 189
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.78 E-value=1.5e+02 Score=31.99 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=39.6
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
.|+.+..-+.+++.++ +.| -++.=+..|++..+.+.+|+.+||.++.+|.+.+++=.+....|.
T Consensus 67 ei~~~r~r~~~~e~kl-~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 67 EIQEIRERIKRAEEKL-SAV-KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHH-hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 111 234456778888899999999999999988877665444444433
No 190
>PLN02372 violaxanthin de-epoxidase
Probab=60.47 E-value=21 Score=40.84 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.3
Q ss_pred CCCchhhhhhhhhcchHHHHHHHHHhh
Q 003668 642 GPSDNEVEIQRLEDTKSDLQRKIADEV 668 (804)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (804)
.|+-+--+++|||.+-.+....|.|||
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 456666679999999999999999883
No 191
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.41 E-value=1.9e+02 Score=30.52 Aligned_cols=102 Identities=23% Similarity=0.255 Sum_probs=65.7
Q ss_pred chhhhhhhhhcchHHHHHHHHH--------------hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 003668 645 DNEVEIQRLEDTKSDLQRKIAD--------------EVKGNEILEASLESRKKALHERRLALENDVARLKD--QLQKERD 708 (804)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~--~l~~e~~ 708 (804)
+.++.-+.|.++++.|.+.-.. =...|..|.+-+++=.+.|...|-++| +|-+-++ |++.-..
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie-~vN~~RK~~Q~~~~~~ 176 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIE-EVNRERKRRQEEAGEE 176 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 5566666677777666653311 124666666666666666666666554 3333333 3333334
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003668 709 KRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (804)
Q Consensus 709 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~ 765 (804)
|+ . |-.+-+..+.....+|+++..|++++..|..+..++
T Consensus 177 L~-~-----------------Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 177 LR-Y-----------------LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HH-H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 2 445788999999999999999999999998877653
No 192
>PRK11637 AmiB activator; Provisional
Probab=59.02 E-value=1.3e+02 Score=34.81 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=8.9
Q ss_pred hhhhhhhhhcchHHHHH
Q 003668 646 NEVEIQRLEDTKSDLQR 662 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~ 662 (804)
+-..|+.+...+.+|..
T Consensus 168 d~~~l~~l~~~~~~L~~ 184 (428)
T PRK11637 168 RQETIAELKQTREELAA 184 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 193
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=58.88 E-value=9.3 Score=47.66 Aligned_cols=13 Identities=0% Similarity=-0.059 Sum_probs=5.6
Q ss_pred hhhhHHHHHHHHh
Q 003668 295 AHIIADCVKYVIR 307 (804)
Q Consensus 295 ~h~vAslLK~fLR 307 (804)
+..++...+..|.
T Consensus 476 ~~~l~~~~~~~l~ 488 (784)
T PF04931_consen 476 LYTLVQIASELLF 488 (784)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 194
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.86 E-value=31 Score=34.59 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 003668 691 ALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (804)
Q Consensus 691 ~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~ 759 (804)
+|..++..|++||+.-..-...|++-|.--.. .|+ +-++...|+.++..+..|+.++..|+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~t-~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSS-------EPT-NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444444444422111 222 23456666666666666666666665
No 195
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=58.71 E-value=1.1e+02 Score=34.78 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=60.1
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 003668 652 RLEDTKSDLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (804)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~ 728 (804)
|.|..-..|+..|..-+++|+-||.. +|+.-+|-.|-+-.-+++-.----|||.|-.-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~r------------------- 342 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECAR------------------- 342 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34455567888899999999998854 33333333333333333332222355555443
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003668 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~ 768 (804)
.++-.|||=|++..+--.|+.++.+..-+|-|.+.+
T Consensus 343 ----Q~qlaLEEKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 343 ----QTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888999888888888888888877776543
No 196
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=58.65 E-value=3.3 Score=46.06 Aligned_cols=27 Identities=41% Similarity=0.753 Sum_probs=20.4
Q ss_pred eEEEeeeEeecCC---CCCCCCceEEEEEe
Q 003668 84 VFKSGPLFISSKG---IGWTSWKKRWFILT 110 (804)
Q Consensus 84 v~KEGyL~~~kKg---~~~ksWkKRWfVL~ 110 (804)
++|||++.++.+| .+.+.||||||.|+
T Consensus 286 ~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 286 VLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhhHhhcccCCCccccchhheeeecC
Confidence 8999987764432 25678999999985
No 197
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=58.31 E-value=1e+02 Score=31.11 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=53.6
Q ss_pred hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC--CCCCC--CCCChhhHHHHhhhhh
Q 003668 668 VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG--SFPIP--DTIDEKTKVELGEIAQ 743 (804)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~--~~~~~--~~~~~~~~~~l~~i~~ 743 (804)
.+-+..||+.|.-..++|.++=-+|++-..+...-.+.-...+..|. .|..| +|++- -....-.=.+.+.++.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~---~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~ 90 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARID---AMMTGGAPFSIDEYLALRRYRDVLEERVRA 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655554444433333333333333333333333333 33332 33322 2222233356788999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 744 AETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 744 ~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
+|+.+..|.+.|..-+.+|...+.
T Consensus 91 ~e~~~a~l~~~l~~~~~~ia~~~r 114 (158)
T PF09486_consen 91 AEAELAALRQALRAAEDEIAATRR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877554
No 198
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=58.00 E-value=2.4 Score=47.01 Aligned_cols=27 Identities=41% Similarity=0.831 Sum_probs=21.6
Q ss_pred eEEEeeeEeecCCC---CCCCCceEEEEEe
Q 003668 84 VFKSGPLFISSKGI---GWTSWKKRWFILT 110 (804)
Q Consensus 84 v~KEGyL~~~kKg~---~~ksWkKRWfVL~ 110 (804)
++|||+|.++.+|. +.+.||||||.|+
T Consensus 283 ~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 283 HLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhHHHHHHhhccCCCccccccchhheeecC
Confidence 78999998866443 4568999999986
No 199
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=57.43 E-value=71 Score=37.36 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=30.9
Q ss_pred HHHhhhcch-hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 664 IADEVKGNE-ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 664 ~~~~~~~~~-~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
+|.+-|+|. .||+.++|| ++|+|...++.|||+|.+-+.-+-
T Consensus 273 LA~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~~ 315 (659)
T KOG4140|consen 273 LAPEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSLT 315 (659)
T ss_pred cchhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhHH
Confidence 344445554 467777665 689999999999999998877554
No 200
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=56.40 E-value=1e+02 Score=32.98 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=36.0
Q ss_pred hcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003668 669 KGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRT 711 (804)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~ 711 (804)
|-...||+...||.++.+.-+..+|+.+..+++.++....-+.
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~ 87 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888899999888888999999999998888876654
No 201
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.32 E-value=31 Score=46.36 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=68.5
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-CCCCCCCCChhhHHHHhhhhhhhhHHHHH
Q 003668 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG-SFPIPDTIDEKTKVELGEIAQAETDIINL 751 (804)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~i~~~e~~~~~l 751 (804)
+++-+...+|+.+..+=..|+.++.+|++-||++..=..-|..-++..-- ...---.+-......+++++.++..++.|
T Consensus 791 ~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~l 870 (1822)
T KOG4674|consen 791 ELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKL 870 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777777889999999999999987655545444332211 11111233445677899999999999999
Q ss_pred HHHHHHHHHHHHH--HhhhccCC
Q 003668 752 KQKAKDLRVQLSE--QLEKNDGF 772 (804)
Q Consensus 752 ~~~~~~l~~~l~~--~~~~~~~~ 772 (804)
++++.+|..+|-- .|.+++++
T Consensus 871 e~k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 871 EIKLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHhhccc
Confidence 9999999988764 45555554
No 202
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=56.30 E-value=27 Score=29.97 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003668 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 694 ~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~ 768 (804)
|-+..|+.+|.+|+.++...|+-+..- +-+.+. -.+.++.-+....+++..|+.+|..-...
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~--------~t~~~~-----~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAY--------STDKKK-----VLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH--------CCHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--------ccCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988876541 011111 34566777777888888888888764443
No 203
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.25 E-value=1.3e+02 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.051 Sum_probs=19.4
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhcchhHhhh
Q 003668 646 NEVEIQRLEDTKSDLQRKIADEVKGNEILEAS 677 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (804)
.+.+...++.++.|.+.-..++.+-|.++-..
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l 177 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKL 177 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665443
No 204
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=55.45 E-value=80 Score=30.89 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=27.8
Q ss_pred hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003668 667 EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERD 708 (804)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~ 708 (804)
+..+=..+++.|++..+++......+++++..++++|+.+..
T Consensus 30 ~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~ 71 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA 71 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444566777777777777777777777777777777644
No 205
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=54.98 E-value=26 Score=41.93 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCCceEEEEEeCCeeEEecCCCCCCCCC---CcceeeecCCee--ecCCcceeeecCCCeEEEEEecCC-CC--cEEEEE
Q 003668 100 TSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGID--LNNSGSVVVKADKKLLTVLFPDGR-DG--RAFTLK 171 (804)
Q Consensus 100 ksWkKRWfVL~~~sL~yYKd~~~~~p~~---g~e~~~~L~~~~--l~~s~sV~~~~~Kk~~FvI~~~~~-dg--rty~LQ 171 (804)
+.-+..|+-|-.+.|++.|.+.+..... .+--.+.+..|. +...+........++.|.+++-.. .| ..|+|+
T Consensus 497 ~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~ 576 (695)
T KOG3523|consen 497 RLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLS 576 (695)
T ss_pred cccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeec
Confidence 4556788888888888887655432110 000001111121 000000000123456677765322 33 479999
Q ss_pred ecchhhHHHHHHHHH
Q 003668 172 AESLEDLYDWKTALE 186 (804)
Q Consensus 172 AdSeeE~~eWI~AI~ 186 (804)
|+|+.||..||.||.
T Consensus 577 a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 577 AESQSDRQRWISALR 591 (695)
T ss_pred CCchHHHHHHHHhcC
Confidence 999999999999996
No 206
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.68 E-value=1.1e+02 Score=31.71 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=65.7
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER----------RLALENDVARLKDQLQKERDKRTAMEAGL 717 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------r~~le~~v~~l~~~l~~e~~~~~~l~~~~ 717 (804)
.-|-+|.+.=.+||.+|..=.++|..|..---|..+||..+ -..-..||.-|+++|.+=.+--.+++.=+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888877666666677554 33456777777777766222222222211
Q ss_pred cCCCC-------------CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 718 GEFNG-------------SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 718 ~~~~~-------------~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
..... .++.--.|++ --++-..+..+++.+..-+.++..|..+|
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 1122233444 23444556666666666666666666654
No 207
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.41 E-value=1.2e+02 Score=37.70 Aligned_cols=84 Identities=25% Similarity=0.315 Sum_probs=46.1
Q ss_pred HHHHhhhcchhHhhhHHHHHH----HHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCCh
Q 003668 663 KIADEVKGNEILEASLESRKK----ALHERRLALE------NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDE 732 (804)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~----~~~~~r~~le------~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~ 732 (804)
|--+|-|.---||+.|||... .=.|||-.+| ++.. -|.||+=||..|.-|-+
T Consensus 362 rqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewErar~qem~~----------------- 423 (1118)
T KOG1029|consen 362 RQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWERARRQEMLN----------------- 423 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-----------------
Confidence 344555666667777765432 1112222222 1111 25577777777775544
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 733 ~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
...++-+.|.-+-|-...|.++...|++++-|
T Consensus 424 Qk~reqe~iv~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 424 QKNREQEWIVYLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345566666777777777777777666544
No 208
>PRK11519 tyrosine kinase; Provisional
Probab=54.34 E-value=1.1e+02 Score=37.80 Aligned_cols=89 Identities=13% Similarity=0.237 Sum_probs=56.7
Q ss_pred HHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHH
Q 003668 660 LQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVEL 738 (804)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~-e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 738 (804)
+-.+|+.++ .++-++.++++|.++...-..-|++.+.+|+.+|++ |.+|...-.. .+ ...++..+++.|
T Consensus 241 ~Aa~iaN~l-~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~-----~~----~vd~~~ea~~~l 310 (719)
T PRK11519 241 QIRDILNSI-TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD-----KD----SVDLPLEAKAVL 310 (719)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC----CCCchHHHHHHH
Confidence 334455444 556667777776666666666688888888888764 5555443322 11 123567788888
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 003668 739 GEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 739 ~~i~~~e~~~~~l~~~~~~l 758 (804)
+.++.+++.+..|+++..+|
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l 330 (719)
T PRK11519 311 DSMVNIDAQLNELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777666665
No 209
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.30 E-value=1.8e+02 Score=31.73 Aligned_cols=66 Identities=36% Similarity=0.545 Sum_probs=53.4
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHE---RRLALENDVARLKDQLQKERDKRTA 712 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~le~~v~~l~~~l~~e~~~~~~ 712 (804)
++.+..|...-.+++.|+.++.+.+..|+.-+..-++.+++ .|..||+.+..|+++|.--+..|..
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 45566777777889999999999999999988888876654 5666999999999999876666654
No 210
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=54.29 E-value=90 Score=31.52 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 736 VELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 736 ~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.-.+++..++..|..|+.++..|...+.|
T Consensus 149 ~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 149 KTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45567778899999999999999888754
No 211
>PRK12704 phosphodiesterase; Provisional
Probab=53.88 E-value=1e+02 Score=36.93 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=19.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (804)
++...+..+.++++++..+..+..++.+.-.|-+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445555566666666666666666666555543
No 212
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=53.06 E-value=1.7e+02 Score=32.68 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 696 VARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 696 v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
|-||++|.-+=-.=...|+.-|..+.+..++|..+-. ....=.....+.+.|..|.++|.-|..||-.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~-~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVN-VSEENDTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHh-hcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778777544222233455555543333333322100 0001111233566777788888877777754
No 213
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.66 E-value=87 Score=41.21 Aligned_cols=74 Identities=8% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCCCceEEEEEeCCeeEE-ecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecc--
Q 003668 98 GWTSWKKRWFILTHTSLVF-FRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAES-- 174 (804)
Q Consensus 98 ~~ksWkKRWfVL~~~sL~y-YKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdS-- 174 (804)
+.+++-.+||=.....++| |....+. ++.+.+... ..++..+|.|+- ..-...|++....
T Consensus 54 ~rksF~~yYLP~~nSyIIYEY~R~~G~-----------~~~vvl~~~-----s~g~~V~YRFId-~~y~~e~fi~~~~~~ 116 (1201)
T PF12128_consen 54 GRKSFDDYYLPYSNSYIIYEYQREDGQ-----------LCCVVLSRK-----SDGRGVQYRFID-APYQRELFIDENNGD 116 (1201)
T ss_pred hhhhHHHHcCCCCCceEEEeeeccCCc-----------eeEEEEeec-----CCCCceeeeecc-CccchhhcccccCcc
Confidence 3578888898888887777 6644321 111111100 122344566553 2223456666655
Q ss_pred ---hhhHHHHHHHHHHH
Q 003668 175 ---LEDLYDWKTALENA 188 (804)
Q Consensus 175 ---eeE~~eWI~AI~~a 188 (804)
...+.+|+..+...
T Consensus 117 ~~~~~~~~e~~r~~~~~ 133 (1201)
T PF12128_consen 117 LVQALSMWELIRELRRK 133 (1201)
T ss_pred ccccccHHHHHHHHHhC
Confidence 46788898888864
No 214
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=52.65 E-value=1.1e+02 Score=31.87 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=55.8
Q ss_pred CchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 003668 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS 723 (804)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~ 723 (804)
.+.|..-.+||+-|..+...|+.--..=+-||+-|..+ .+=++.|.--|+|.++|.
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~--------~~Q~~~va~~Q~q~r~ea---------------- 156 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIA--------RQQQQQVAARQQQARQEA---------------- 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----------------
Confidence 34566667788999988888875444444567666543 334677777777777764
Q ss_pred CCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 724 FPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 724 ~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
+++=.+-..+.+-+..|.++|..|+.|.+
T Consensus 157 -----------~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 157 -----------QALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333455666677777777777766654
No 215
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.51 E-value=1e+02 Score=36.62 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccc
Q 003668 741 IAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLH 781 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 781 (804)
+..++.++.+++.++..+...+..-. ....|..|.+..
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~Cp~C~~~~ 294 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE---KGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCCcC
Confidence 34455555556666655555554443 355777777644
No 216
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=52.27 E-value=51 Score=30.63 Aligned_cols=60 Identities=32% Similarity=0.276 Sum_probs=48.6
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHh----hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhH
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILE----ASLESRKKALHERR----------LALENDVARLKDQLQKERDK 709 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r----------~~le~~v~~l~~~l~~e~~~ 709 (804)
|.-++.+-+++|.|||.==|-=++|= ++.|.||-|.+++= -++|.|+..||+||-.+++-
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~lde 74 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLDE 74 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999987666667776 88999999888763 35899999999999888764
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.22 E-value=1.1e+02 Score=37.44 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=22.7
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILE--ASLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
+++|...-.++..+-.++...+..+. ..|+++-+.+......++++.+.++.++..
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~ 241 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEE 241 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555554433221 112222233333334444444444444433
No 218
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=51.94 E-value=1.1e+02 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 003668 741 IAQAETDIINLKQKAKDLRVQLSEQLEKNDGF 772 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~ 772 (804)
+..-+..+.+++++..++..+..++.+.-.|-
T Consensus 113 L~~re~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 113 LSNKEKNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444555555555555555555555555443
No 219
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.75 E-value=1.8e+02 Score=28.54 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 003668 744 AETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 744 ~e~~~~~l~~~~~~l~~~l~ 763 (804)
.+.++-+-++++..|..+|.
T Consensus 131 ~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555543
No 220
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=51.68 E-value=39 Score=29.26 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhcchhHhhhHHHHHH
Q 003668 659 DLQRKIADEVKGNEILEASLESRKK 683 (804)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (804)
.|+.+|-+=.--|..|+++||.||+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~ 26 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQ 26 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887777789999999999998
No 221
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.18 E-value=64 Score=27.47 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 677 SLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
.+++|=++-..|..+|+++|++|++++.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999999999865
No 222
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=51.17 E-value=16 Score=42.04 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=6.2
Q ss_pred HhhhHHHHHHHH
Q 003668 674 LEASLESRKKAL 685 (804)
Q Consensus 674 ~~~~~~~~~~~~ 685 (804)
|...-.|||+.+
T Consensus 395 LEkKRQrRKEKf 406 (458)
T PF10446_consen 395 LEKKRQRRKEKF 406 (458)
T ss_pred hhhhhhhhhHHH
Confidence 444445566654
No 223
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.96 E-value=73 Score=39.32 Aligned_cols=13 Identities=54% Similarity=0.795 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHH
Q 003668 675 EASLESRKKALHE 687 (804)
Q Consensus 675 ~~~~~~~~~~~~~ 687 (804)
||.||||.++|.|
T Consensus 326 qaELerRRq~lee 338 (1118)
T KOG1029|consen 326 QAELERRRQALEE 338 (1118)
T ss_pred hHHHHHHHHHHHH
Confidence 3567788777654
No 224
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=49.91 E-value=1.5e+02 Score=29.92 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CCCCCChhhHHHHhhhhhhhhHHHHHHHHHH
Q 003668 679 ESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IPDTIDEKTKVELGEIAQAETDIINLKQKAK 756 (804)
Q Consensus 679 ~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~ 756 (804)
+.=|+.|.++|..|...+.++.++++.+.. ..+.+.++ .....|.-+...-.++ ..+-..+..+++.
T Consensus 4 ~~~r~~L~~~r~~L~~~i~~~~~~~~~~~~---------~~~~~~~s~~~~d~~D~a~~~~e~~~--~~~l~~~~~~~L~ 72 (159)
T TIGR02890 4 AELKNMLLQEKKELEQRLKQMNKEDGIASQ---------RESTGELSQYDNHPADLATELYEREK--DIALREHEERELR 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hcccccccccCCCcchHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344556666666666666666555532211 11122221 1233443333332333 3344556667778
Q ss_pred HHHHHHHHHhhhccCCCCCCccccc
Q 003668 757 DLRVQLSEQLEKNDGFVGDSSNQLH 781 (804)
Q Consensus 757 ~l~~~l~~~~~~~~~~~~~~~~~~~ 781 (804)
.+..-|..-....|| .|..|....
T Consensus 73 ~Ie~AL~Ri~~G~YG-~Ce~CGe~I 96 (159)
T TIGR02890 73 EIEHALQKIENGTYG-ICEVCGKPI 96 (159)
T ss_pred HHHHHHHHHhCCCCC-eecccCCcc
Confidence 888888877778888 788887643
No 225
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.87 E-value=42 Score=33.83 Aligned_cols=65 Identities=28% Similarity=0.319 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 692 LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 692 le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
|..|+.+|.-|.+.|+.+|...|.-+..- -..+...+|+++.-|+.+++.+..|+.++..++.|.
T Consensus 55 L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 55 LREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 44566666666667776666655433210 022344556677777777777777777777666654
No 226
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.60 E-value=1e+02 Score=31.31 Aligned_cols=75 Identities=27% Similarity=0.389 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHH
Q 003668 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKA 755 (804)
Q Consensus 676 ~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~ 755 (804)
+-|.+|...+.++ ..+++++.+.+.+|.+- +.+ +.+-+.+....-++|..+|..+..++.++
T Consensus 107 ~~l~~R~~~~~~~-~~~~~~l~~k~~~~~kl-------~~~----------~~~~~~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 107 ETLDDRADALLTL-QSLKKDLASKKAQLEKL-------KAA----------PGIKPAKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------hhc----------CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 44555555555555443 221 11456788888889999999999999888
Q ss_pred HHHHHHHHHHhhh
Q 003668 756 KDLRVQLSEQLEK 768 (804)
Q Consensus 756 ~~l~~~l~~~~~~ 768 (804)
......+..+..+
T Consensus 169 ~~i~~~~~~El~~ 181 (218)
T cd07596 169 EEISERLKEELKR 181 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 227
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.69 E-value=2.9e+02 Score=29.77 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=31.1
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
..|..+..+.-.+|+.++..+.+.+.++..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466688888889999999988888889999888876665
No 228
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=48.60 E-value=21 Score=42.21 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=58.0
Q ss_pred CceEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEec
Q 003668 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (804)
Q Consensus 82 ~~v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~ 161 (804)
+...||||+.--..+. ..-+|+|..|.-.++..|.+......-+..+....|. +.....-+.+......+||+|.+.
T Consensus 411 st~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~-v~~~~~~~~vp~~~~phcFEI~T~ 487 (888)
T KOG4236|consen 411 STKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILS-VSSNNGFSLVPAGTNPHCFEIRTA 487 (888)
T ss_pred hhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCceeEEeecHHHhhe-eeccCCcccCCCCCCCceEEEEee
Confidence 4478899765422222 2346778888888888888776542111111111111 111111111223356789999874
Q ss_pred CCCCcEEEEEecc------------hhhHHHHHHHHHHHhc
Q 003668 162 GRDGRAFTLKAES------------LEDLYDWKTALENALA 190 (804)
Q Consensus 162 ~~dgrty~LQAdS------------eeE~~eWI~AI~~ai~ 190 (804)
.+.+|-.++ -+..+.|-.||+.++.
T Consensus 488 ----~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 488 ----TTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred ----eEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 455666666 3448899999999874
No 229
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=47.73 E-value=6 Score=44.38 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEeeeEeecCCC----CCCCCceEEEEEe
Q 003668 84 VFKSGPLFISSKGI----GWTSWKKRWFILT 110 (804)
Q Consensus 84 v~KEGyL~~~kKg~----~~ksWkKRWfVL~ 110 (804)
+.|+|+++++.+++ ++..||||||.|+
T Consensus 303 ~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 303 TVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred hhhhhHhhhccccCCCCcccccccceeeecC
Confidence 78999998876522 3336999999874
No 230
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.64 E-value=1.3e+02 Score=41.18 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 003668 352 LLQRILMMMQ 361 (804)
Q Consensus 352 lL~~Ll~~L~ 361 (804)
++.||+..++
T Consensus 428 lF~wlV~riN 437 (1930)
T KOG0161|consen 428 LFGWLVKRIN 437 (1930)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 231
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.06 E-value=15 Score=45.29 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC----CCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP----IPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~ 759 (804)
.++.++..||..|..|.+.|..-......++..+........ ...........+-.+|..+|..+.+|++++..|.
T Consensus 451 ~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 451 LVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp -------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667767766776665555555555555533222221 1233445566677799999999999999999999
Q ss_pred HHHHH
Q 003668 760 VQLSE 764 (804)
Q Consensus 760 ~~l~~ 764 (804)
.+|.+
T Consensus 531 ~~l~~ 535 (722)
T PF05557_consen 531 SELEK 535 (722)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 232
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.65 E-value=1.6e+02 Score=40.51 Aligned_cols=80 Identities=23% Similarity=0.430 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC-CCCC--hhhHHHH-hhhhhhhhHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP-DTID--EKTKVEL-GEIAQAETDIINLKQKAKDLR 759 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~-~~~~--~~~~~~l-~~i~~~e~~~~~l~~~~~~l~ 759 (804)
.|...+..||++|..|..-|.+|...|.=+|.....--|.+... ..+. ..-+++| ...+-.|..+..|..++.+++
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45566778999999999999999999988885443333333211 1111 1122222 233445555555555555555
Q ss_pred HHHH
Q 003668 760 VQLS 763 (804)
Q Consensus 760 ~~l~ 763 (804)
..+.
T Consensus 1090 ~~~~ 1093 (1930)
T KOG0161|consen 1090 AEVA 1093 (1930)
T ss_pred HHHH
Confidence 4443
No 233
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.85 E-value=1.3e+02 Score=35.63 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.5
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 730 IDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
+.....++..++..++..+..|++++..|+.+|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666677777888888888888888887755
No 234
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=45.77 E-value=2.2e+02 Score=33.52 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
..-|.+...+=+||...|..+.-|+.+.++||.||..|+
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 335667788889999999999999999999999998765
No 235
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.55 E-value=1.2e+02 Score=38.32 Aligned_cols=113 Identities=21% Similarity=0.353 Sum_probs=69.1
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-----HHhHHHHHHhhhcCC
Q 003668 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVAR------LKDQLQK-----ERDKRTAMEAGLGEF 720 (804)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~------l~~~l~~-----e~~~~~~l~~~~~~~ 720 (804)
-+|.+-.|||.+|.- +=|-...=-.|-.+|=.|.+|=-.||..|.. ++|||++ |.|||.-|+-+
T Consensus 428 ~aEs~iadlkEQVDA-AlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~---- 502 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDA-ALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA---- 502 (1243)
T ss_pred HHHHHHHHHHHHHHH-hhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344455555555521 1122222223455555666666667776654 5788865 78888876653
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 003668 721 NGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGF 772 (804)
Q Consensus 721 ~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~ 772 (804)
+|.. .-+-....|..+-|.-.-.+|.|..+-|.-|+.||..++.++..+
T Consensus 503 ~g~~---kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 503 KGAR---KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred hhHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2322 223334455566666667788889999999999999888877654
No 236
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.81 E-value=2.1e+02 Score=32.22 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=57.7
Q ss_pred HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhh
Q 003668 664 IADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQ 743 (804)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 743 (804)
|++---+|+-||++|+.=++ +| -+-|.+...|-..|-+++.-.++|-. .-..+|...+.+=.+-|
T Consensus 136 i~~~~EEn~~lqlqL~~l~~---e~-~Ekeeesq~LnrELaE~layqq~L~~---eyQatf~eq~~ml~kRQ-------- 200 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQ---EC-GEKEEESQTLNRELAEALAYQQELND---EYQATFVEQHSMLDKRQ-------- 200 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HH-hHhHHHHHHHHHHHHHHHHHHHHHHH---HhhcccccchhhhHHHH--------
Confidence 33333578888888875433 33 34567777887788888877776654 33446665655555554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 003668 744 AETDIINLKQKAKDLRVQLSEQLEKND 770 (804)
Q Consensus 744 ~e~~~~~l~~~~~~l~~~l~~~~~~~~ 770 (804)
+.|.+||.||.||-..+..-.|...
T Consensus 201 --~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 201 --AYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888887777666555544
No 237
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=44.80 E-value=2.2e+02 Score=28.61 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=56.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHH
Q 003668 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753 (804)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~ 753 (804)
..+.+++..+++..||.-...+-.||=..++.-.-....|+. ....|+.+...+.+|++
T Consensus 30 a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~---------------------~~~qv~~Lr~~e~~le~ 88 (152)
T PF07321_consen 30 ARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK---------------------WQQQVASLREREAELEQ 88 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---------------------HHHHHHHHHHhHHHHHH
Confidence 345677777889999999988888888888776655555544 34677888888888888
Q ss_pred HHHHHHHHHHHHhhh
Q 003668 754 KAKDLRVQLSEQLEK 768 (804)
Q Consensus 754 ~~~~l~~~l~~~~~~ 768 (804)
.+.++..++.++++.
T Consensus 89 ~~~~a~~~~~~e~~~ 103 (152)
T PF07321_consen 89 QLAEAEEQLEQERQA 103 (152)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877653
No 238
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=44.68 E-value=1.3e+02 Score=29.95 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.9
Q ss_pred cCCCeEEEEEe-----cCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 150 ADKKLLTVLFP-----DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 150 ~~Kk~~FvI~~-----~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.+..+.++|+. .+++.++|.||+.+.+.++..+.+|++.+.
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 45666666664 345678999999999999999999999873
No 239
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.63 E-value=1.2e+02 Score=39.89 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 003668 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEF 720 (804)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~ 720 (804)
+..+++.++.++.+|.+||+....+.+++.+=.+....|...+...
T Consensus 836 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 836 EQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445556667777777777777776666666555555555443
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=44.53 E-value=1.7e+02 Score=37.63 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHHHHHH
Q 003668 743 QAETDIINLKQKAKDLR 759 (804)
Q Consensus 743 ~~e~~~~~l~~~~~~l~ 759 (804)
.++..+..|++++.+|.
T Consensus 480 ~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 480 RVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334433333
No 241
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.30 E-value=3.3e+02 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003668 735 KVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (804)
Q Consensus 735 ~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~ 765 (804)
+.+...++.+++++..|+.+...|..++.+.
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777666666553
No 242
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=44.22 E-value=2.3e+02 Score=29.48 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 741 IAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
|.++.--+.||||.|.++.|-..|.+
T Consensus 72 l~qt~~qL~nlEqmvsdiEft~vqk~ 97 (209)
T KOG2910|consen 72 LTQTDNQLINLEQMVSDIEFTQVQKK 97 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999888765
No 243
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=43.90 E-value=34 Score=40.76 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred CCCCceEEEEEeCC---eeEEecCCCCCCCCCCcceeeecCCeeecCCcceeeecCCCeEEEEEecCCCCcEEEEEecch
Q 003668 99 WTSWKKRWFILTHT---SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESL 175 (804)
Q Consensus 99 ~ksWkKRWfVL~~~---sL~yYKd~~~~~p~~g~e~~~~L~~~~l~~s~sV~~~~~Kk~~FvI~~~~~dgrty~LQAdSe 175 (804)
++.|.+.||+.-.. .++.|-.+.+...+ -.+.+.+|.+..-+.+ ...+....|.++.. ...++|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~----~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQ----ATIPLPGVEVTIPEFV-RREDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccccc----cccccCccccCCCccc-ccchhcchhhhhhh---cceeeeccCCH
Confidence 47999999988644 45556655543221 2356667765532211 22344444444433 35799999999
Q ss_pred hhHHHHHHHHHHHh
Q 003668 176 EDLYDWKTALENAL 189 (804)
Q Consensus 176 eE~~eWI~AI~~ai 189 (804)
+--+.|+..+.-|.
T Consensus 582 q~qq~wl~~l~~A~ 595 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAV 595 (623)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998776
No 244
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=43.70 E-value=1.6e+02 Score=37.75 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 003668 741 IAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
+..++..+.+++.++..+..+|.
T Consensus 917 l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 917 LEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 245
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.39 E-value=1.5e+02 Score=36.90 Aligned_cols=80 Identities=11% Similarity=0.225 Sum_probs=50.9
Q ss_pred chhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHH
Q 003668 671 NEILEASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDII 749 (804)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~-e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~ 749 (804)
++-++.++++|.++...-..-|++.+.+|+.+|.+ |..|...-.. .+ ...+...+++.|+.|+.+++.++
T Consensus 251 ~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~----~~d~~~ea~~~l~~~~~l~~ql~ 321 (726)
T PRK09841 251 NNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RD----SVDLNLEAKAVLEQIVNVDNQLN 321 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555556678888888887753 5555443332 11 12356778889999988888887
Q ss_pred HHHHHHHHHH
Q 003668 750 NLKQKAKDLR 759 (804)
Q Consensus 750 ~l~~~~~~l~ 759 (804)
.|+++..+|.
T Consensus 322 ~l~~~~~~l~ 331 (726)
T PRK09841 322 ELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHH
Confidence 7776666553
No 246
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=43.23 E-value=2.5e+02 Score=32.79 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=12.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.++.++.++..|+.++..++.++..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555443
No 247
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.11 E-value=2.3e+02 Score=29.08 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=41.9
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 003668 652 RLEDTKSDLQRKIADEVKGNEILEASLESR---KKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (804)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~ 728 (804)
.+-..+.+|+.++...--.+..|++.+..+ -..|...+.+|+..+..|.+.|.+-......|-
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~-------------- 150 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ-------------- 150 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344567777888766666666666655443 345666667788888888888776554444322
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003668 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (804)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~ 765 (804)
+...++--+...+|..+.+|+.+-.+|=-++-+.
T Consensus 151 ---DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 151 ---DELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444456677777777777777766555443
No 248
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=43.07 E-value=1.8e+02 Score=37.34 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=9.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 003668 741 IAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l 762 (804)
+..++..+.+|+.++..+..++
T Consensus 910 ~~~l~~~l~~l~~~~~~~~~~~ 931 (1179)
T TIGR02168 910 RSELRRELEELREKLAQLELRL 931 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 249
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.98 E-value=2.5e+02 Score=35.88 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-----
Q 003668 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK----- 768 (804)
Q Consensus 694 ~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~----- 768 (804)
+....+++++++.......+...+.. +.....+...+.+.+++.+..++..+..+..++++++..
T Consensus 382 e~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (908)
T COG0419 382 ERLKQLEEAIQELKEELAELSAALEE----------IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655554433 333344455566777888888888888888888886541
Q ss_pred ---ccCCCCCCcc
Q 003668 769 ---NDGFVGDSSN 778 (804)
Q Consensus 769 ---~~~~~~~~~~ 778 (804)
..|-.|..|+
T Consensus 452 ~l~~~~~~CPvCg 464 (908)
T COG0419 452 ELAGAGEKCPVCG 464 (908)
T ss_pred HHHhCCCCCCCCC
Confidence 1467899998
No 250
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.51 E-value=6e+02 Score=29.47 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 003668 692 LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKD 757 (804)
Q Consensus 692 le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~ 757 (804)
+-+|+.-+-+.||+||.-..-||.=| .+-++--..||..+-.+++..|.||+=
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeql-------------Nd~~elHq~Ei~~LKqeLa~~EEK~~Y 294 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQL-------------NDLTELHQNEIYNLKQELASMEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566677777777777777777643 334555555666555555555555543
No 251
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.87 E-value=2.6e+02 Score=29.07 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 003668 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 685 ~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~ 761 (804)
+.+....||+.+-+||+|++.=. .+..+.=.||+.+++++..|++.+.+...+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~------------------------~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLK------------------------EKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777776654322 223333389999999999999999876654
No 252
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.60 E-value=2.1e+02 Score=33.98 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=26.3
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l 703 (804)
+..+..|+....+|+.++.+--..=+.++...++++ .+..+-..|++....++..|
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666443333333333333322 23333334444444444444
No 253
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.22 E-value=2.6e+02 Score=37.88 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~~~~~ 768 (804)
.+..++..+..||+++..+...+.+-++.
T Consensus 450 klee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888765543
No 254
>PRK00106 hypothetical protein; Provisional
Probab=41.16 E-value=90 Score=37.41 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (804)
++...+..+.++++++..+..+..++.+.-.|-+
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt 166 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAALS 166 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444445555555555555555555555555443
No 255
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=41.14 E-value=1.3e+02 Score=33.40 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=65.7
Q ss_pred hhhhcchHHHHHHHH-----------HhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 003668 651 QRLEDTKSDLQRKIA-----------DEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (804)
Q Consensus 651 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~ 719 (804)
.+||..+..|++||. .-|+||..|++-++==| .|-.|..++.+.|.+-...-. +
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~--------~L~~eI~~f~~~l~~~~~~~e----~--- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTK--------DLRREIDSFDERLEEAAEKEE----L--- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh----h---
Confidence 899999999999992 56899999999876322 233444444444433222111 1
Q ss_pred CCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHhhhccCCCCCCcc--ccccccccc
Q 003668 720 FNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKD----LRVQLSEQLEKNDGFVGDSSN--QLHQTSTKL 787 (804)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~----l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 787 (804)
....+..-++|..+|.++.+|=+++++ |+.-|.---..-+++++..-+ +.-+.++++
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLaltTSG~~lst~lp~~vSPsRLLQAS~~l 172 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDDAIPLINLALTTSGVNLSTSLPPTVSPSRLLQASNFL 172 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhccccccCCCCCCcCHHHHHHHHHHH
Confidence 112244456778888888888777776 555555433344445544332 334444443
No 256
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.38 E-value=1.8e+02 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCC-CCcEEEEEecchhhHHHHHHHHHH
Q 003668 151 DKKLLTVLFPDGR-DGRAFTLKAESLEDLYDWKTALEN 187 (804)
Q Consensus 151 ~Kk~~FvI~~~~~-dgrty~LQAdSeeE~~eWI~AI~~ 187 (804)
....||.|+.... +.+++.|-|+|.++++.|+..|..
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 3346777775321 256899999999999999999864
No 257
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.23 E-value=2.4e+02 Score=37.06 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=6.9
Q ss_pred CcEEEEEecchhhHHH
Q 003668 165 GRAFTLKAESLEDLYD 180 (804)
Q Consensus 165 grty~LQAdSeeE~~e 180 (804)
|++--|--..+.++..
T Consensus 144 G~V~~i~~~kp~err~ 159 (1163)
T COG1196 144 GKVEEIINAKPEERRK 159 (1163)
T ss_pred ccHHHHHcCCHHHHHH
Confidence 4433333344455544
No 258
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.67 E-value=1.6e+02 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
.+..|=..+.+|+.++..|..+|-..|
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555567788888888888876654
No 259
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.46 E-value=1.2e+02 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=15.6
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHH
Q 003668 732 EKTKVELGEIAQAETDIINLKQKAKD 757 (804)
Q Consensus 732 ~~~~~~l~~i~~~e~~~~~l~~~~~~ 757 (804)
..-.+.|+++..++..+..|+.++..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655553
No 260
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.74 E-value=1.4e+02 Score=35.26 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhcchhHhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 658 SDLQRKIADEVKGNEILEASLESRKK-----------ALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
.+++.++++=.+.|..|++..||=++ |+...|.+|+++...|++++|+=..+-.-|.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666665554333 6666666666666666666665544444443
No 261
>PRK02224 chromosome segregation protein; Provisional
Probab=38.37 E-value=1.5e+02 Score=37.40 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=9.4
Q ss_pred cchhhHHHHHHHHHH
Q 003668 173 ESLEDLYDWKTALEN 187 (804)
Q Consensus 173 dSeeE~~eWI~AI~~ 187 (804)
....+...||..|-+
T Consensus 109 ~~~~~~~~~i~~llg 123 (880)
T PRK02224 109 DGARDVREEVTELLR 123 (880)
T ss_pred cChHHHHHHHHHHHC
Confidence 345677777777644
No 262
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.32 E-value=2.1e+02 Score=32.02 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKD 701 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ 701 (804)
++.++..+|+.+|..|+.
T Consensus 176 ~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 176 KLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555556666655543
No 263
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.31 E-value=4.4e+02 Score=26.65 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=16.9
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK 683 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (804)
.++..++..-+.|+.++..+-+-++.++..++.=+.
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444444444443333
No 264
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.02 E-value=1.1e+02 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=19.0
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhH
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASL 678 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (804)
+.+|.+.|.+.++|-..|+.=.-+=..|+..|
T Consensus 46 ~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 46 EKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888777743222223344443
No 265
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.69 E-value=1.4e+02 Score=37.10 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=15.2
Q ss_pred hhhhhhhhhcchHHHHHHHHH
Q 003668 646 NEVEIQRLEDTKSDLQRKIAD 666 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~ 666 (804)
.+..|+.|.....+|+.+++.
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~ 306 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIAD 306 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 356788888877788777764
No 266
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.35 E-value=2.3e+02 Score=31.95 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 003668 750 NLKQKAKDLRVQLSE 764 (804)
Q Consensus 750 ~l~~~~~~l~~~l~~ 764 (804)
.+++++..+..+|.+
T Consensus 250 ~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 250 EAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 267
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=37.31 E-value=2.9e+02 Score=25.87 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccc
Q 003668 746 TDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLH 781 (804)
Q Consensus 746 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 781 (804)
+.+.+..+++..+..-|..-..-.|| .|..|..+.
T Consensus 56 ~~~~~~~~~l~~i~~AL~ri~~g~yG-~C~~Cge~I 90 (110)
T TIGR02420 56 RTRDRERKLIKKIDEALKRIEDGEYG-YCEECGEEI 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC-chhccCCcc
Confidence 33344556677778888887778888 888888654
No 268
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=36.95 E-value=3e+02 Score=32.87 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003668 679 ESRKKALHE 687 (804)
Q Consensus 679 ~~~~~~~~~ 687 (804)
++|.+.|..
T Consensus 93 ekr~e~Lek 101 (514)
T TIGR03319 93 DRKMESLDK 101 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 269
>PRK02224 chromosome segregation protein; Provisional
Probab=36.54 E-value=3e+02 Score=34.78 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003668 686 HERRLALENDVARLKDQLQKER 707 (804)
Q Consensus 686 ~~~r~~le~~v~~l~~~l~~e~ 707 (804)
+..--++++++..|+.++.+..
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~ 226 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYE 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 270
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=36.27 E-value=33 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=9.8
Q ss_pred HHHHHHHHhhcccccCCCC
Q 003668 421 QAIVITLLEEYDKIFGEGS 439 (804)
Q Consensus 421 ~~IVe~LIeny~~IF~e~~ 439 (804)
+.|+..+.+.-..+|.++-
T Consensus 849 ~~ImKTI~dDP~~Ffe~Gg 867 (960)
T KOG1189|consen 849 TKIMKTITDDPIAFFEDGG 867 (960)
T ss_pred HHHhhhhccCHHHHHhcCC
Confidence 3455555555555555543
No 271
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.10 E-value=4.5e+02 Score=32.50 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=76.2
Q ss_pred hhhhhhcchHHHHHHHHHhhh-------cchhHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q 003668 649 EIQRLEDTKSDLQRKIADEVK-------GNEILEASLES------RKKALHERRLALENDVARLKDQLQKERDKRTAM-- 713 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l-- 713 (804)
.||.|+-.+..+-.++. |++ -+.+||+.+|+ |-..|.++-+-||-++.+|+..|+.+-.+++.+
T Consensus 249 qlqel~~l~~a~~q~~e-e~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~ 327 (716)
T KOG4593|consen 249 QLQELEELERALSQLRE-ELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGS 327 (716)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45666555555444442 233 45677777774 444677777789999999999999988777762
Q ss_pred -----------------HhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 714 -----------------EAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 714 -----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
.+.|+.-..++..|..++.++..+|.+.-.-=+-+..++.|...||-+|.
T Consensus 328 ~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~ 394 (716)
T KOG4593|consen 328 LRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLA 394 (716)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 23445556778888899999888887655444445555666666666643
No 272
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=36.09 E-value=40 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=9.6
Q ss_pred ecCCCCCCCCCCcceeeecCC
Q 003668 117 FRSDPSAIPQKGSEVNLTLGG 137 (804)
Q Consensus 117 YKd~~~~~p~~g~e~~~~L~~ 137 (804)
|+.+.-..|.+|-++.+.+.+
T Consensus 535 ~~~qsIilPI~grpVPFHiss 555 (1001)
T COG5406 535 FARQSIILPIGGRPVPFHISS 555 (1001)
T ss_pred eccceEEEeecCcccceeehh
Confidence 454443344455444444443
No 273
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.60 E-value=1.9e+02 Score=30.92 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHH
Q 003668 687 ERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ-LSEQ 765 (804)
Q Consensus 687 ~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~-l~~~ 765 (804)
.-+-+|.+|-.++=++|+.=-.=...||+.+..+. +.-....+.|..+...+.+|+.+|+++... |+..
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~----------~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAE----------SERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445666666666666332222234666553322 223456778888888999999999999888 6654
Q ss_pred h
Q 003668 766 L 766 (804)
Q Consensus 766 ~ 766 (804)
+
T Consensus 109 ~ 109 (230)
T PF10146_consen 109 P 109 (230)
T ss_pred C
Confidence 3
No 274
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.52 E-value=4.3e+02 Score=25.81 Aligned_cols=70 Identities=29% Similarity=0.403 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 003668 679 ESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKD 757 (804)
Q Consensus 679 ~~~~~~~~~~r~~le~~v~~l~~~l~~-e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~ 757 (804)
..+-..+..=-..|+.+|.||++++.+ |+.+. +++ .+.+++-..+..+++.+..++.++.-
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-~~~-----------------~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELA-SAE-----------------EKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444566666666666543 33332 222 24456666666677776666666666
Q ss_pred HHHHHHHHh
Q 003668 758 LRVQLSEQL 766 (804)
Q Consensus 758 l~~~l~~~~ 766 (804)
|...+.+-+
T Consensus 120 lk~~~~~~~ 128 (151)
T PF11559_consen 120 LKNQLQQRK 128 (151)
T ss_pred HHHHHHHHH
Confidence 666555533
No 275
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=35.32 E-value=52 Score=42.39 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=38.1
Q ss_pred ecCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhccCCC
Q 003668 149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (804)
Q Consensus 149 ~~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~~aP~ 194 (804)
-.++|-+|.|......-..|-|.|.|.+|++.||+.|+.++...|.
T Consensus 681 Atd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 681 ATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred hccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 4578888888876444568999999999999999999999976554
No 276
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.09 E-value=1.7e+02 Score=29.30 Aligned_cols=66 Identities=30% Similarity=0.413 Sum_probs=50.6
Q ss_pred CchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003668 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLES---RKKALHERRLALENDVARLKDQLQKERDK 709 (804)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~le~~v~~l~~~l~~e~~~ 709 (804)
.++|+...-||.-..++..++.-=|+-=..|+|..+- +.+.|.+|+-++|+-+.+|++=|+.....
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777889998888888885555544556665554 45689999999999999999998766443
No 277
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.07 E-value=2.9e+02 Score=34.85 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=40.5
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKE 706 (804)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e 706 (804)
+=|..|++||..+.+++.+..+ =+.+.+.+++.++.+.+.+..|++...++.+++++|
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 574 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEE----AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999888888776532 234556667777777777777777777777766665
No 278
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=2.2e+02 Score=33.30 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=28.6
Q ss_pred HHhhhcchhHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003668 665 ADEVKGNEILEASLESRK---KALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~---~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
.+++-+|..|||--+.-- +||..+|.+++..-++|+ +|++
T Consensus 237 ~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE-~llk 279 (521)
T KOG1937|consen 237 TEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLK 279 (521)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHH
Confidence 456778888887543321 388899999998888888 5553
No 279
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.98 E-value=2.7e+02 Score=32.59 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=47.4
Q ss_pred cchhHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHH-HhhhcCCCCCCCCCCCCChhhHHHHhhhhh
Q 003668 670 GNEILEASLES----RKKALHERRLALENDVARLKDQLQ-KERDKRTAM-EAGLGEFNGSFPIPDTIDEKTKVELGEIAQ 743 (804)
Q Consensus 670 ~~~~~~~~~~~----~~~~~~~~r~~le~~v~~l~~~l~-~e~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 743 (804)
.|++.++.++. |.+....-+.-|++.+.+++++|. .|..|+... ++|+..... ...+.......-+++..
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~----~~~~~~~l~~l~~~l~~ 215 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQ----EGDYYSEISEAQEELEA 215 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc----hhhHHHHHHHHHHHHHH
Confidence 36666666654 444555666778999999999886 466666654 333321100 01122222333334445
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 003668 744 AETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 744 ~e~~~~~l~~~~~~l~~~l~ 763 (804)
+++++..++.++..|..+|.
T Consensus 216 ~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 216 ARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555554444
No 280
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=34.87 E-value=55 Score=32.53 Aligned_cols=82 Identities=27% Similarity=0.332 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCC----CCCCCCCCCChhhHHHHhhhh--hhhhHHHHH-HHHHHHHHHHHHHHhh
Q 003668 695 DVARLKDQLQKERDKRTAMEAGLGEFN----GSFPIPDTIDEKTKVELGEIA--QAETDIINL-KQKAKDLRVQLSEQLE 767 (804)
Q Consensus 695 ~v~~l~~~l~~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~i~--~~e~~~~~l-~~~~~~l~~~l~~~~~ 767 (804)
+|.=|-+||++|.. |.|.||..-. -..+-..+|-+|--+.=++|+ .-| |+.+. +.++.+|+..|.+|++
T Consensus 39 eieiL~kQl~rek~---afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqe-d~LngKe~~I~eLk~~l~sQK~ 114 (153)
T PF15175_consen 39 EIEILSKQLEREKL---AFEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQE-DILNGKENEIKELKQRLASQKQ 114 (153)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhhcccccchHHHHhhhHHHHH
Confidence 57788899999875 4445542211 111111222222222223444 333 33343 6789999999999999
Q ss_pred h-ccCCCCCCcccc
Q 003668 768 K-NDGFVGDSSNQL 780 (804)
Q Consensus 768 ~-~~~~~~~~~~~~ 780 (804)
- |.+.+.|-..+.
T Consensus 115 ~~Hk~qlsdl~Iqk 128 (153)
T PF15175_consen 115 NFHKRQLSDLRIQK 128 (153)
T ss_pred HHhhccchhhHHhh
Confidence 9 899999877653
No 281
>PLN02678 seryl-tRNA synthetase
Probab=34.84 E-value=89 Score=36.65 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=13.4
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 734 TKVELGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 734 ~~~~l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
++++-++|..+|+++..+++++.++-.+|
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444445555444444444444333
No 282
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.31 E-value=1e+02 Score=31.77 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=46.6
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER--RL-ALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~-~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
+|+..+..+.+|+...+.=-+--+-|+-+.|.||.-+|++ |. +|++...-|+++|+ .+|.-|.
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e---~lr~el~ 140 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILE---SLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 6777777888888888766666778999999999977754 44 78888888888443 4555443
No 283
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.24 E-value=78 Score=37.21 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=39.7
Q ss_pred cCCCCCCchhhhhhhhhcch---HHHHHHHHHhhhcchhHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 638 ESIDGPSDNEVEIQRLEDTK---SDLQRKIADEVKGNEILEASLE---SRKKALHERRLALENDVARLKDQL 703 (804)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~le~~v~~l~~~l 703 (804)
.-|+-..++-+..-+|+..+ .+|+.+|+++ +.+++ +..+.+.++=..||.++++|++|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665544 7888888876 44444 555555444447999999999998
No 284
>PF14282 FlxA: FlxA-like protein
Probab=34.08 E-value=1.5e+02 Score=27.78 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 003668 691 ALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (804)
Q Consensus 691 ~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~ 769 (804)
.|++.+..|++||++-.+ ...+|.+++. +-+.++.+.|.-|+.++..|+.+..++....
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677777777764322 1345666654 4566677777777777777777777665444
No 285
>PRK11281 hypothetical protein; Provisional
Probab=33.88 E-value=2e+02 Score=37.67 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=47.5
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH----------HHHH---------HH----HHHHHHHHHHHH
Q 003668 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK----------ALHE---------RR----LALENDVARLKD 701 (804)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---------~r----~~le~~v~~l~~ 701 (804)
++-+.|+-||.+..-|+ +|.+.-+.++.||..++.=.+ +++. .. .+||+....++.
T Consensus 57 ~~k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 57 EDKLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHH
Confidence 35566777777766554 344444555555555543111 1111 00 347777777777
Q ss_pred HHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhh
Q 003668 702 QLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEI 741 (804)
Q Consensus 702 ~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i 741 (804)
+||....--+.+.+ ++....+.|+.+|+.+.+.
T Consensus 136 ~Lq~~Q~~La~~Ns-------qLi~~qT~PERAQ~~lsea 168 (1113)
T PRK11281 136 QLQNAQNDLAEYNS-------QLVSLQTQPERAQAALYAN 168 (1113)
T ss_pred HHHHHHHHHHHHHH-------HHHhhhcchHHHHHHHHHH
Confidence 77765554444443 3333455666666665443
No 286
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.48 E-value=2.8e+02 Score=31.09 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=20.5
Q ss_pred HhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 003668 674 LEASLESR-KKALHERRLALENDVARLKDQLQK-ERDKRT 711 (804)
Q Consensus 674 ~~~~~~~~-~~~~~~~r~~le~~v~~l~~~l~~-e~~~~~ 711 (804)
.++.+++. .++....+.-|++.|.+++++|.+ |..|..
T Consensus 156 ~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 156 GERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444442 222334445578888888777754 444444
No 287
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=3.8e+02 Score=31.48 Aligned_cols=127 Identities=17% Similarity=0.342 Sum_probs=81.1
Q ss_pred cCCCCCCchhhhhhhhhcchHHHHHHHHHhhh-----cchhHhhhHHHHHH-------HHHHHH-HHHHHHHHHHHHHHH
Q 003668 638 ESIDGPSDNEVEIQRLEDTKSDLQRKIADEVK-----GNEILEASLESRKK-------ALHERR-LALENDVARLKDQLQ 704 (804)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~r-~~le~~v~~l~~~l~ 704 (804)
+.++--.+-|+-+++|+..-..++.+|-.=.+ -=+.||..|-=|++ +-.-+| .+|||||.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666778888888777777776632111 11334444444443 111133 359999999999999
Q ss_pred HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003668 705 KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (804)
Q Consensus 705 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~ 765 (804)
+--+++.-|-+.|..-+--.+ .-..-...++...+|--.++|+-|.-.+--+|+.|+|..
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887754211111 111222446677788888999999888888999888864
No 288
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.26 E-value=3e+02 Score=36.75 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=13.1
Q ss_pred cccceeeccCCCc--cccccccC
Q 003668 25 LVIGIWSVKAPNG--LRRKNLSG 45 (804)
Q Consensus 25 l~~~iq~tR~fe~--tr~~~e~l 45 (804)
+.+.|+..|.|.. ....+..+
T Consensus 4 ~kl~i~g~rSf~~~~~~~~~I~F 26 (1311)
T TIGR00606 4 LKMSILGVRSFGIEDKDKQIIDF 26 (1311)
T ss_pred ceeeeeceecCCCccccceeeec
Confidence 4577888888853 34444455
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=33.09 E-value=6.3e+02 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003668 681 RKKALHERRLALENDVARLKDQ 702 (804)
Q Consensus 681 ~~~~~~~~r~~le~~v~~l~~~ 702 (804)
|++.++.+.-.+..++++|+++
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555443
No 290
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.86 E-value=2.5e+02 Score=27.99 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l~~-e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
++..-+..--.+...|++||.. .-+|++.|.+ ..-|. +-|..+-..|..|.+|+.++|+++
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~------------~~pD~------~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTA------------NPPDS------SKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556778888888753 3444442221 11122 223334444455666677666666
Q ss_pred HHHhhhc
Q 003668 763 SEQLEKN 769 (804)
Q Consensus 763 ~~~~~~~ 769 (804)
..+....
T Consensus 113 ~~~~~k~ 119 (143)
T PRK11546 113 DIAMAEA 119 (143)
T ss_pred HHHHHHc
Confidence 6655553
No 291
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.77 E-value=1e+02 Score=26.05 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003668 684 ALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~ 715 (804)
.|.+|--.||.+++|++..+.+=+.-|+|-++
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778999999999999888888887665
No 292
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.57 E-value=6.6e+02 Score=29.88 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 657 KSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (804)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l 703 (804)
...++.++....-.++.|++.||...++..+.+..|++--.+|..|.
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445556666666666666666555655555555443
No 293
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=32.56 E-value=4.8e+02 Score=26.41 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred HHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhH------H
Q 003668 663 KIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTK------V 736 (804)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~ 736 (804)
-|..-.+-++.||+.|.-...+|.++=-+|++-+....- +.-.|+......-.|..|.- |.+|++-.+ .
T Consensus 9 l~~rr~r~~~rL~a~l~a~R~al~~a~a~la~~~~~~~a---~~~~l~~~~arid~m~tG~~--~f~id~~la~~ryr~v 83 (158)
T TIGR02559 9 LLERKTRRDARLRAELAERRAALQSADRELAEKVSQAEA---KADRLHRHAARIDDLATGTA--SFTIDAYLQCRAYRDV 83 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCC--cccHHHHHHHHHHHHH
Confidence 344445677788888777766666655555544443332 33344444444445555533 233443322 3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 737 ELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 737 ~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
+.+..+++|+.++.|.+-|...+.+|.-.+.
T Consensus 84 l~~~~~~aE~~~aaa~~al~~~~~~laa~~r 114 (158)
T TIGR02559 84 LEAHLGAAEQAEAAARAALQALAAALAAKKR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999976554
No 294
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.33 E-value=1.4e+02 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=20.5
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 732 ~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
..+.++.+++..+-..+..|+.++..+..+|..
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666554
No 295
>PRK03918 chromosome segregation protein; Provisional
Probab=32.01 E-value=4.1e+02 Score=33.42 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=5.3
Q ss_pred Ccchhhhhhcc
Q 003668 373 STSAVAACMAP 383 (804)
Q Consensus 373 t~~NLAv~FgP 383 (804)
+..+..+.|.|
T Consensus 13 ~~~~~~i~f~~ 23 (880)
T PRK03918 13 SHKSSVVEFDD 23 (880)
T ss_pred CccCceEecCC
Confidence 33334455655
No 296
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.01 E-value=2.2e+02 Score=29.99 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=23.4
Q ss_pred hhhhhhcchHHHHHHHHHh----hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADE----VKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
.+++||..-.+|+.+++.= -...+.||-.++.+++...+ |+++-++|++||++
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L~~~l~~ 150 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444444444444444321 12223344444444433222 55556666655554
No 297
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.90 E-value=90 Score=38.18 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=26.3
Q ss_pred HHhhhcchhHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 003668 665 ADEVKGNEILEASLESR-----KKALHERRLALENDVARLKDQLQ 704 (804)
Q Consensus 665 ~~~~~~~~~~~~~~~~~-----~~~~~~~r~~le~~v~~l~~~l~ 704 (804)
-+-+|||-.+-...+.. ++.--.+|..|+++|+||+..++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~ 96 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQ 96 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578887665444433 22233378899999999997665
No 298
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=31.88 E-value=22 Score=29.02 Aligned_cols=20 Identities=30% Similarity=0.815 Sum_probs=18.6
Q ss_pred CCCCceEEEEEeCCeeEEec
Q 003668 99 WTSWKKRWFILTHTSLVFFR 118 (804)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYK 118 (804)
.+.|.|.|+++.+.+|..||
T Consensus 27 Vr~wEKKWVtv~dtslriyK 46 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYK 46 (52)
T ss_pred HHHHhhceEEeccceEEEEE
Confidence 47899999999999999998
No 299
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.35 E-value=4.1e+02 Score=35.03 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=27.2
Q ss_pred hhhhhhcchHHHHHHHHHhhhcch-------hHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNE-------ILEASLESRKKALHER---RLALENDVARLKDQLQK 705 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---r~~le~~v~~l~~~l~~ 705 (804)
.|++||.....++.++..-.+... .++..++.+++.+.++ ...|++.++.+..+..+
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e 362 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455666666666665543333322 3444555555555554 33444444444433333
No 300
>PRK12705 hypothetical protein; Provisional
Probab=31.07 E-value=1.6e+02 Score=35.16 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003668 685 LHERRLALENDVARLKDQL 703 (804)
Q Consensus 685 ~~~~r~~le~~v~~l~~~l 703 (804)
.+..|..+|++++..+..+
T Consensus 61 ~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 61 LLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 301
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=30.97 E-value=3.6e+02 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 739 GEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 739 ~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
++++.+++.+..+++++..+..+|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888888885
No 302
>PHA03187 UL14 tegument protein; Provisional
Probab=30.78 E-value=1.4e+02 Score=32.68 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 685 ~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
..+||+.|+. +..++-+-|+|-|.. +-.|.+...--|....+--..+-.+|.-=...-+-|...+||+..++..+..
T Consensus 7 ~RRRRl~LaE--a~~RE~IyKaRTLdL-lreGVd~~DPaFV~AFTSAKeA~~dl~rqLRS~aRveaVeQKar~Iq~rVEe 83 (322)
T PHA03187 7 SRRRRLQLEE--AYQREMIFKMRTLDL-VREGVDKRSPAFVRAFTSAKEASLDLDRYMQAHSRVGRVEQNARALAQRVEA 83 (322)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-HHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889988 899999999999876 5556655544443333333445556666666677788889999999988888
Q ss_pred Hhh
Q 003668 765 QLE 767 (804)
Q Consensus 765 ~~~ 767 (804)
|..
T Consensus 84 Q~a 86 (322)
T PHA03187 84 QAA 86 (322)
T ss_pred HHH
Confidence 765
No 303
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.44 E-value=3.2e+02 Score=33.53 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=33.5
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~ 704 (804)
.++.|..-+..|..++...++.|..|-.-...+ .+|=..||..|.++++++.
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq----EerL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ----EERLAELEEELERLQEQQE 139 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456676667777777777788888773322222 2233358888888888764
No 304
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=30.13 E-value=3.5e+02 Score=31.14 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 003668 744 AETDIINLKQKAKDLR 759 (804)
Q Consensus 744 ~e~~~~~l~~~~~~l~ 759 (804)
+|+..+.|||+|..|.
T Consensus 264 lEt~q~~leqeva~le 279 (499)
T COG4372 264 LETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777765
No 305
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.87 E-value=3.1e+02 Score=31.71 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 003668 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 694 ~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~ 761 (804)
.+.--||+||++|+-++.-||--| +-+.++-...+|-++.||-++.-||.|
T Consensus 441 ~ei~~L~eqle~e~~~~~~le~ql-----------------~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 441 KEIQSLQEQLEKERQSEQELEWQL-----------------DDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345679999999999999998744 557788888899999999999998844
No 306
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.79 E-value=5.7e+02 Score=30.89 Aligned_cols=16 Identities=44% Similarity=0.520 Sum_probs=7.8
Q ss_pred hhhhhhhHHHHHHHHH
Q 003668 740 EIAQAETDIINLKQKA 755 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~ 755 (804)
.|..+|.++..|.+++
T Consensus 221 ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 221 RIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554444
No 307
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.49 E-value=4.7e+02 Score=28.63 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=42.5
Q ss_pred hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 003668 668 VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (804)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (804)
.+.++|=+..++..+.++...+.+|++-..++..++.+- +..|..... ...-.++..++++
T Consensus 127 ~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~---~~~~~~~~~----------------~~~~~~~~~~~~~ 187 (327)
T TIGR02971 127 FRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGA---RAALASLAE----------------EVRETDVDLAQAE 187 (327)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh----------------cccHHHHHHHHHH
Confidence 445566666666666666665555555555444322221 111111000 0012457778888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003668 748 IINLKQKAKDLRVQLSE 764 (804)
Q Consensus 748 ~~~l~~~~~~l~~~l~~ 764 (804)
+..++.++.....+|..
T Consensus 188 ~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 188 VKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888777754
No 308
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=29.49 E-value=3e+02 Score=27.15 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=40.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccccccce
Q 003668 741 IAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDY 792 (804)
Q Consensus 741 i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (804)
.+.+.+..+.=++++.+|-.+.-.-|.|..+.++|.--+.+..|---..-||
T Consensus 70 ~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd~V~RL~~RPA~tga~dY 121 (135)
T TIGR03495 70 LAQARALLAQREQRIERLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcHHHHHHhcCCCCCChHHH
Confidence 4455666666777777777777778999999999999888888876666665
No 309
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.29 E-value=46 Score=37.98 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCccC
Q 003668 469 DDQDGATPESDAYTDDDLDNASSRSCSE 496 (804)
Q Consensus 469 ~~y~s~e~e~~~d~d~d~e~~~~g~~s~ 496 (804)
++.|+++|..+++.|.|.|....|..+.
T Consensus 280 d~dDdeeN~ddd~~d~d~e~~~v~dN~~ 307 (514)
T KOG3130|consen 280 DDDDDEENIDDDDGDNDHEALGVGDNSI 307 (514)
T ss_pred cccchhhcccccccccchhhhccCCCcC
Confidence 3334445554444444445544555444
No 310
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=29.23 E-value=3.5e+02 Score=25.85 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHH
Q 003668 659 DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVEL 738 (804)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 738 (804)
-.|.-++-|-..+.|.++--++|-+.|.+-|..=+++++..+.+-.+|-. ..... ++.+.-+....++..|++.|
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~--~~ea~---~~g~~~~~~~~l~~et~~ki 81 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFK--EFEAK---HLGGNGAAEEKAEAETQAKI 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HcCCcchHHHHHHHHHHHHH
Confidence 35566677777888888888899999999999999999999877555544 33322 11111122344555555554
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 003668 739 GEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 739 ~~i~~~e~~~~~l~~~~~~l 758 (804)
.+ +.....+-+.+|+++
T Consensus 82 ~~---ik~~~~~~~~~Vv~~ 98 (113)
T TIGR01147 82 RE---IKKAVQKNKDAVIKD 98 (113)
T ss_pred HH---HHHHHHHhHHHHHHH
Confidence 44 455666666666654
No 311
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.87 E-value=2.1e+02 Score=37.38 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
.++..-..+.-+|.+||-||+.|++-|.++..-|. +..+. ++. -.+|....++..++..+..++.
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~~~-------------~~t-~~~Ekq~~~~~~~l~~~K~~~e 810 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQEQE-------------VNT-KMLEKQLKKLLDELAELKKQLE 810 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHHHh-------------hcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455888999999999999999999998887 22211 111 3344444445555555555666
Q ss_pred HHhhhccCCC
Q 003668 764 EQLEKNDGFV 773 (804)
Q Consensus 764 ~~~~~~~~~~ 773 (804)
-++.+-.|.-
T Consensus 811 ~~~~q~~~~~ 820 (1317)
T KOG0612|consen 811 EENAQLRGLN 820 (1317)
T ss_pred HHHHHhhccc
Confidence 5555544443
No 312
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.78 E-value=4.4e+02 Score=34.61 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=38.6
Q ss_pred hhhhhhhhhcchHHHHHHH---HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 646 NEVEIQRLEDTKSDLQRKI---ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
.++....|++-..-|..++ ..|.-+|..+|.=+..|-+-+..+-.+||+.+..||+++-.
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444 34556777777777666666666666699999999988754
No 313
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.70 E-value=4.5e+02 Score=27.40 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=32.7
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~ 715 (804)
.|..|..--.+++.+.+.--|.=+.+++.-.|=.+.| ..++++|..|+.+|..=..-..+|.+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL----~~a~~e~~eL~k~L~~y~kdK~~L~~ 90 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL----KKAEEEVEELRKQLKNYEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544333232233333222222333 35778888888888766555555554
No 314
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.60 E-value=3.3e+02 Score=25.82 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=9.7
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHH
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRK 682 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (804)
-.+|++.+++||++++ -||-+||-=|
T Consensus 4 ~~~l~as~~el~n~La-------~Le~slE~~K 29 (107)
T PF09304_consen 4 KEALEASQNELQNRLA-------SLERSLEDEK 29 (107)
T ss_dssp ----------HHHHHH-------HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH-------HHHHHHHHHH
Confidence 3578899999998874 4555555443
No 315
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.54 E-value=2e+02 Score=24.95 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=34.0
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHH----HHHHH---H---HHHHHHHHHHHHHHHHHHH
Q 003668 651 QRLEDTKSDLQRKIADEVKGNEILEASLES----RKKAL---H---ERRLALENDVARLKDQLQK 705 (804)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~---~~r~~le~~v~~l~~~l~~ 705 (804)
++||+.+..||.++.-=++.|.+.|.-+.+ |-.++ + ..=..|=.+|..|+++|+.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999997777777776654432 22222 2 2223355666667666543
No 316
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=28.49 E-value=23 Score=35.06 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.6
Q ss_pred CCCCceEEEEEeCCeeEEecCC
Q 003668 99 WTSWKKRWFILTHTSLVFFRSD 120 (804)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~ 120 (804)
++.|-|+|+++.+.+|.+||=-
T Consensus 28 VRrWEKKwVtvgDTslRIyKWV 49 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWV 49 (165)
T ss_pred HHHHhhheEeecccceEEEEee
Confidence 5789999999999999999843
No 317
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=27.84 E-value=2.2e+02 Score=33.37 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=46.2
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhh---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC
Q 003668 652 RLEDTKSDLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDV-ARLKDQLQKERDKRTAMEAGLGEFNGSFPIP 727 (804)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~le~~v-~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~ 727 (804)
-.|..+++.|.-+ |-|-.||-+|.. +|| ..|.--++. |++| +.|.+||+.||+||+.++.-|..
T Consensus 500 S~eTll~niq~ll-kva~dnar~qekQiq~Ek--~ELkmd~lr-erelreslekql~~ErklR~~~qkr~kk-------- 567 (641)
T KOG3915|consen 500 SIETLLTNIQGLL-KVAIDNARAQEKQIQLEK--TELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLKK-------- 567 (641)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3455566666544 345678877642 332 222222221 3343 35888999999999988886643
Q ss_pred CCCChhhHHHHhhhhhhhh
Q 003668 728 DTIDEKTKVELGEIAQAET 746 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~ 746 (804)
-.|+|.-|.+.-..|+
T Consensus 568 ---Ekk~k~k~qe~L~~~s 583 (641)
T KOG3915|consen 568 ---EKKAKRKLQEALEFES 583 (641)
T ss_pred ---HHHHHHHHHHHhhhcc
Confidence 2355666665544444
No 318
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.78 E-value=4.3e+02 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003668 748 IINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 748 ~~~l~~~~~~l~~~l~~~~~ 767 (804)
+.+|.....++-.|+-+++.
T Consensus 562 ~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 562 AGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HhhHhhhhhhhhHHHHHHhh
Confidence 55566666666666666665
No 319
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.39 E-value=2.6e+02 Score=29.87 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=67.3
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CC
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IP 727 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~--~~ 727 (804)
|.++...+.+|..+|..--+.-+.|+ .+.+.+..+=..+++++++|+.|+..-...+.-|.--+......+- .-
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~----~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLE----VYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444433333333332 2333444444456677777777777666555555443322222221 12
Q ss_pred CCCChhhHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHHhhhccCCCCCCccccccccccccccceeee
Q 003668 728 DTIDEKTKVELGEIAQAETDIIN----LKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTSTKLYALDYFYF 795 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~~~~----l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (804)
..+|-...+-.+-|+.+.+.+.+ +-.|...+=.-+ +.+..||..-+.-.....+.....+-|++|+
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~--~~E~~yg~~i~~~~~~i~~dG~~~~V~~Lrl 189 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAY--QIEMEYGRTIEVYQGTITLDGEERQVDFLRL 189 (251)
T ss_pred cCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHH--HHHHHhCCceeEEEEEEeECCeEEEEEEEee
Confidence 23444444444444333322211 112222221111 2466788888887777777777778888775
No 320
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.27 E-value=2e+02 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003668 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (804)
..|++..++.||+ ...-|+.++.....+|.+-|++|.-++
T Consensus 31 ~eLs~e~R~~lE~------E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLEK------ELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHHH------HHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 5688888888873 344577777777777777777665443
No 321
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=27.23 E-value=3.4e+02 Score=24.86 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=47.6
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESR-----KK-----ALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
+|.+++....+++..+.+-++.=++|+..+-|- |. |.-...-+|..|+.+|..|+.+-.++-..|.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 678888888888888888777777766544332 11 4455556788999999999988877766554
No 322
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.22 E-value=1.2e+02 Score=33.14 Aligned_cols=74 Identities=24% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHH
Q 003668 678 LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINL 751 (804)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l 751 (804)
|..|=+.|.+-=-.||..|+.-++||+..-.-+..-..-=..+.........++.-.+.+.+||..+|+.+.+|
T Consensus 185 Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 185 LRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555556788888877887764322211000000001111233456677777777777777776655
No 323
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.14 E-value=3.9e+02 Score=34.61 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=33.2
Q ss_pred hhhcchHHHHHHH--HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 652 RLEDTKSDLQRKI--ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (804)
Q Consensus 652 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l 703 (804)
+++.++.+|+.+- ..++| +.+...+.+-+++..++-.||..|+.+++|+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~---~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLK---EEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555432 22333 3455667777888888889999999999888
No 324
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.11 E-value=2.5e+02 Score=30.43 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=15.0
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 003668 734 TKVELGEIAQAETDIINLKQKAKDLRV 760 (804)
Q Consensus 734 ~~~~l~~i~~~e~~~~~l~~~~~~l~~ 760 (804)
..++=+|+......+..|+++|..|+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666665554
No 325
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.08 E-value=1.7e+02 Score=31.96 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 003668 691 ALENDVARLKDQLQKERDKRTAMEAGLGE 719 (804)
Q Consensus 691 ~le~~v~~l~~~l~~e~~~~~~l~~~~~~ 719 (804)
.|=+.=+.|-+.|.+|.++|.+...++..
T Consensus 128 eit~~GA~LydlL~kE~~lr~~R~~a~~r 156 (267)
T PF10234_consen 128 EITQRGASLYDLLGKEVELREERQRALAR 156 (267)
T ss_pred HHHHHHHHHHHHHhchHhHHHHHHHHHcC
Confidence 36677788888899999998888888763
No 326
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.05 E-value=6.1e+02 Score=31.55 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH-------HHhhhcCCCCCCC------CCCCCChhhHHHHhhhhhhhhH------------
Q 003668 693 ENDVARLKDQLQKERDKRTA-------MEAGLGEFNGSFP------IPDTIDEKTKVELGEIAQAETD------------ 747 (804)
Q Consensus 693 e~~v~~l~~~l~~e~~~~~~-------l~~~~~~~~~~~~------~~~~~~~~~~~~l~~i~~~e~~------------ 747 (804)
++.+..|..||..-+.-+.+ |+..+........ ....++.-.+++..+++.+++.
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~h 315 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH 315 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 46677777776665544443 2322322111111 1122334555556666666653
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhcc
Q 003668 748 --IINLKQKAKDLRVQLSEQLEKND 770 (804)
Q Consensus 748 --~~~l~~~~~~l~~~l~~~~~~~~ 770 (804)
|..|+.++.+|+.++.++.+.-.
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~ 340 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKIT 340 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778877777666543
No 327
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.97 E-value=4.2e+02 Score=33.41 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=27.6
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (804)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~ 704 (804)
+-|..|++||..+.+++.+..+ =+.+.+.+++.++.|.+.+.+||+.-.++.++++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~ 567 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEH----LEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776655421 1123333444444444444444444444443333
No 328
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.88 E-value=5e+02 Score=29.73 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=62.0
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC-------
Q 003668 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP------- 725 (804)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~------- 725 (804)
|+.+.++|+..-. +.|+.|. +|-.....-+..||....+..+++..=-..-..|+.|+..-.+++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al~----~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAALR----KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4445555555443 4555444 4444444445555555555555544433444455555544444331
Q ss_pred ------CC-CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 726 ------IP-DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 726 ------~~-~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
.. ..-|.-...++.|+..++..+..|.+++...+..|+.=.
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~ 351 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLE 351 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234555566779999999999999999998887776533
No 329
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.59 E-value=55 Score=40.55 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=28.0
Q ss_pred eEEEeeeEeecCCCCCCCCceEEEEEeCCeeEEec
Q 003668 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFR 118 (804)
Q Consensus 84 v~KEGyL~~~kKg~~~ksWkKRWfVL~~~sL~yYK 118 (804)
++|+|-||+...-. +.|..+||||....|.|-.
T Consensus 475 svk~GiLy~kd~vd--heWt~h~fvlt~~kl~ys~ 507 (1267)
T KOG1264|consen 475 SVKQGILYMKDPVD--HEWTRHYFVLTDAKLSYSD 507 (1267)
T ss_pred hhhcceEEEecCCC--CceeeeEEEEecceeEeeh
Confidence 58999999876544 7999999999999999854
No 330
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.24 E-value=2.7e+02 Score=24.45 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcchhHhhhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003668 659 DLQRKIADEVKGNEILEASLE---SRKKALHERRLALENDVARLKDQ 702 (804)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~le~~v~~l~~~ 702 (804)
.|..||..=+-..+.||-.++ .++.+|.+-+.+|+++..+|++.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466677766666777775544 44457888899999999988844
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.16 E-value=8.1e+02 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=12.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 740 EIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 740 ~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.|..+|..|..|+++...|-.+.+.
T Consensus 121 ~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 121 QLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444433
No 332
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.02 E-value=1.9e+02 Score=29.91 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003668 687 ERRLALENDVARLKDQLQ 704 (804)
Q Consensus 687 ~~r~~le~~v~~l~~~l~ 704 (804)
++..+|++.+++|+.+|+
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666665
No 333
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.97 E-value=97 Score=37.60 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 003668 695 DVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (804)
Q Consensus 695 ~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~ 766 (804)
+--+|.+||++|.++-.|-.+..-+-.... .+..-+++-+-|++--| -||||+.+=..||++.|
T Consensus 822 E~q~l~~ql~qEle~l~ayq~k~k~~~e~q-----~~re~~ele~rvslrra---~lEqkieeE~~~~~~~R 885 (948)
T KOG0577|consen 822 ECQVLREQLEQELELLNAYQSKIKMQAEEQ-----HERELRELEQRVSLRRA---LLEQKIEEELAQLQTER 885 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhHH---HHHHHHHHHHHHhcccc
Confidence 344566666666666666666544432211 12122222222222222 26666666666666666
No 334
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=25.81 E-value=4.4e+02 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=19.2
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003668 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERD 708 (804)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~ 708 (804)
.|+...+...+.+......+|..+..|.++|+.|+.
T Consensus 222 ~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 222 KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555566666666666666554
No 335
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=25.78 E-value=4.5e+02 Score=27.92 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhh--cCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 690 LALENDVARLKDQLQKERDKRTAMEAGL--GEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 690 ~~le~~v~~l~~~l~~e~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
-.|=.|+.+|+.+|..|++--.| +.-| |.-+|..-+..+.-.-...+++ +-.++.|.+|+-++++-..|-+|
T Consensus 126 EklkndlEk~ks~lr~ei~~~~a-~~rLdLNLEkgr~~d~~~~~~l~~~e~s--~kId~Ev~~lk~qi~s~K~qt~q 199 (220)
T KOG3156|consen 126 EKLKNDLEKLKSSLRHEISKTTA-EFRLDLNLEKGRIKDESSSHDLQIKEIS--TKIDQEVTNLKTQIESVKTQTIQ 199 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhcch-hceeecchhhccccchhhhcchhHhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999875432 2222 3444444333322222222333 44555555566555555555554
No 336
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=25.56 E-value=2.7e+02 Score=32.93 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=21.8
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 734 TKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 734 ~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
..+...++..++..+..|++++.-|+.-|..-..
T Consensus 195 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 195 DPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666777777777777777766655433
No 337
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.53 E-value=4.8e+02 Score=34.17 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=43.9
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEA-----SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG 722 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~ 722 (804)
.++.|+.+..+..|++ ++| |...+. .+|++--++.|.+--|=+..++|.+++++.+.-+..+|++++.+..
T Consensus 365 ~~k~e~~~~~~~e~~~-~~k-n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~ 440 (1293)
T KOG0996|consen 365 VEKNEAVKKEIKERAK-ELK-NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARI 440 (1293)
T ss_pred HHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHh
Confidence 4555666666655543 344 223332 3444444555666666677777888888888888888887766544
No 338
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.40 E-value=3.5e+02 Score=25.78 Aligned_cols=62 Identities=15% Similarity=0.382 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 003668 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (804)
Q Consensus 685 ~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~ 759 (804)
+|+.=-.|-++|.+|++-+.+=-+.-+ -+ -..+-.++-++.+.|+.+|.++..||..|.+..
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa-----~S--------Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSA-----AS--------RASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hh--------hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 455555677888888877652111111 01 123445777889999999999999999988753
No 339
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=25.38 E-value=6.1e+02 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.2
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003668 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDK 709 (804)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~ 709 (804)
.+++.++.+++.+++++..|.+....-++++.+|.+.
T Consensus 229 ~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 229 EQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999888888888887776654
No 340
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.32 E-value=96 Score=38.62 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=33.9
Q ss_pred cCCCeEEEEEecCCCCcEEEEEecchhhHHHHHHHHHHHhc
Q 003668 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (804)
Q Consensus 150 ~~Kk~~FvI~~~~~dgrty~LQAdSeeE~~eWI~AI~~ai~ 190 (804)
.++-|.|.+.+.....-.|.|.|++.+++.+|+.+|+.+..
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~ 911 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW 911 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence 45667777777666666899999999999999999999874
No 341
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=24.77 E-value=3.4e+02 Score=32.15 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhhcchhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhH
Q 003668 657 KSDLQRKIADEVKGNEILEA-SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTK 735 (804)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 735 (804)
-.+||..|..=--|| +.|- .|-|==+..||--.-+--|..+.|+.|-|-+-.+++|+.-|-+..-++ .
T Consensus 12 f~~l~r~~~~l~~g~-e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~v----------d 80 (604)
T KOG3564|consen 12 FEQLVRDIEILGEGN-EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQV----------D 80 (604)
T ss_pred HHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHH----------H
Confidence 346666666555677 5542 233334577777777888999999999999999999999887766655 7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 736 VELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 736 ~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
++.++=-.||+|..+||++...+..-|-.
T Consensus 81 a~ik~rr~ae~d~~~~E~~i~~i~d~l~~ 109 (604)
T KOG3564|consen 81 AEIKRRRRAEADCEKLETQIQLIKDMLKC 109 (604)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999888766644
No 342
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.76 E-value=4.3e+02 Score=31.89 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-------CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 003668 686 HERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG-------SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 686 ~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l 758 (804)
+..|-.||+++.+|++++-+ ||.-++.+.....+ .+...+.+..+..-....|..+|-++..|+.+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34688899999999999854 33333333222111 122333344444445556677777777777776666
Q ss_pred HHHHHHHh
Q 003668 759 RVQLSEQL 766 (804)
Q Consensus 759 ~~~l~~~~ 766 (804)
..+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66665544
No 343
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.73 E-value=7.3e+02 Score=25.00 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 003668 692 LENDVARLKDQLQKER 707 (804)
Q Consensus 692 le~~v~~l~~~l~~e~ 707 (804)
++.+...++++++..+
T Consensus 107 ~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 107 LESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3333333333333333
No 344
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.71 E-value=6.1e+02 Score=27.66 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred hhcchhHhhhHHHHHHHHHHHH---HHHHHHHHHHH
Q 003668 668 VKGNEILEASLESRKKALHERR---LALENDVARLK 700 (804)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r---~~le~~v~~l~ 700 (804)
-|.|+.++-|.++||+...+.. ..||.|-..|+
T Consensus 200 ~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr 235 (269)
T KOG3119|consen 200 RRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALR 235 (269)
T ss_pred HhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888777443322 22554444443
No 345
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.56 E-value=1.7e+02 Score=27.48 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003668 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGL 717 (804)
Q Consensus 676 ~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~ 717 (804)
.....++..|.+++..|++..++|+.+++.=..+...|+.+|
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (116)
T cd04769 75 LPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDAL 116 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455777889999999999999999999988777777766654
No 346
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=24.55 E-value=1.5e+02 Score=36.33 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=41.3
Q ss_pred hhhhhcchH-HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 650 IQRLEDTKS-DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 650 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
|-|||--|. +.+.|.+ |-++-.+|.+|+=| +-|++|+|= .+|..---++|++||.|.+
T Consensus 354 ~gkLdp~~aeeF~kRV~---~~ia~~~AEIekmK-~~Hak~m~k---~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 354 VGKLDPGKAEEFRKRVA---KKIADMNAEIEKMK-ARHAKRMAK---FKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred ccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHH---HhhccHHHHHHHHHHhccC
Confidence 345555554 4677777 55688999999765 679999874 4444444579999999887
No 347
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.55 E-value=6.1e+02 Score=31.01 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLAL------ENDVARLKDQLQKERDKRTAMEAGLGEF 720 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l------e~~v~~l~~~l~~e~~~~~~l~~~~~~~ 720 (804)
+..|+.++.....|+..+..=.......++..++..+.+.-..-++ |..|++|+..++.-..-...|..=....
T Consensus 341 ~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 341 ESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCC--------CCCCCCChhhHHHHhhhhhhhhHHHHHHHHH---HHHHHHHHHHhhhccCCCC
Q 003668 721 NGSF--------PIPDTIDEKTKVELGEIAQAETDIINLKQKA---KDLRVQLSEQLEKNDGFVG 774 (804)
Q Consensus 721 ~~~~--------~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~---~~l~~~l~~~~~~~~~~~~ 774 (804)
..++ ..-...-...+..+.+|-.+...+..++.++ .+++.||..+.+.......
T Consensus 421 R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 421 RAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred HhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.48 E-value=59 Score=40.73 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=4.2
Q ss_pred CccccchhHh
Q 003668 228 PVIGRPILLA 237 (804)
Q Consensus 228 ~vFGvpLe~l 237 (804)
.-|..||..+
T Consensus 1162 ss~S~PlsaL 1171 (1516)
T KOG1832|consen 1162 SSSSSPLSAL 1171 (1516)
T ss_pred ccccCchHHH
Confidence 3344444433
No 349
>PRK12704 phosphodiesterase; Provisional
Probab=24.26 E-value=6.8e+02 Score=30.05 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003668 678 LESRKKALHERRLALE 693 (804)
Q Consensus 678 ~~~~~~~~~~~r~~le 693 (804)
|++|.+.|..+...|+
T Consensus 98 Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 98 LDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 350
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.01 E-value=2.7e+02 Score=27.23 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=33.4
Q ss_pred hhcchHHHHHHHHH---hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 003668 653 LEDTKSDLQRKIAD---EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLG 718 (804)
Q Consensus 653 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~ 718 (804)
-|+-|.+||.|||. |+|+-..|+-.| -.-|+-|.-.|.+||..-..|..|-.
T Consensus 23 WeiERaEmkarIa~LEGE~r~~e~l~~dL--------------~rrIkMLE~aLkqER~k~~~~~~~~~ 77 (134)
T PF08232_consen 23 WEIERAEMKARIAFLEGERRGQENLKKDL--------------KRRIKMLEYALKQERAKYKKLKYGTD 77 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhccccccc
Confidence 35668899999974 444444444333 33466777788888887666665543
No 351
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=7.4e+02 Score=31.32 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=85.4
Q ss_pred cccchhHhhhcCCCCcHHHHHHHHHHHHc--C---CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHH
Q 003668 230 IGRPILLALEDVDGTPSFLEKAIRFIEEH--G---VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (804)
Q Consensus 230 FGvpLe~ll~~~~~VP~~l~~~i~~Le~~--G---l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (804)
|-.+|-.++.....+=.++..+|..|... + ......|-.+-+...++.++-.+-.. +....+++.|--=|+.
T Consensus 323 i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 323 IAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHHHH
Confidence 44455556666667778888888777653 2 33455677888888888887776542 1223344444444455
Q ss_pred HHhhCCCC-----------------CCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 003668 305 VIRELPSS-----------------PVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363 (804)
Q Consensus 305 fLReLPeP-----------------Llp~~l~~~~l~a~~~~~----~~ri~~i~~lI~~~LP~~Nr~lL~~Ll~~L~~V 363 (804)
|.+.-+.. =++..+.+.++..++..+ .+-+..|+.+|. +=|..|..+|.+|.++|..+
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq-~~p~~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ-KDPAEHLEILFQLARLLDTI 478 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh-hChHHHHHHHHHHHHHhhhh
Confidence 55544422 133445666666666555 677888999886 89999999999999998655
Q ss_pred H
Q 003668 364 A 364 (804)
Q Consensus 364 ~ 364 (804)
.
T Consensus 479 ~ 479 (968)
T KOG1060|consen 479 L 479 (968)
T ss_pred h
Confidence 3
No 352
>PRK00106 hypothetical protein; Provisional
Probab=23.83 E-value=6.7e+02 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003668 678 LESRKKALHERRLALEN 694 (804)
Q Consensus 678 ~~~~~~~~~~~r~~le~ 694 (804)
|++|.+.|..+...|++
T Consensus 113 LekRee~LekrE~eLe~ 129 (535)
T PRK00106 113 LDRKDENLSSKEKTLES 129 (535)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 353
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=23.72 E-value=2.7e+02 Score=27.53 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=36.7
Q ss_pred hHHHHHHH----------HHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhh
Q 003668 677 SLESRKKA----------LHERRLAL------ENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGE 740 (804)
Q Consensus 677 ~~~~~~~~----------~~~~r~~l------e~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 740 (804)
-+|||+++ |.+-|.+| +.++.+|+..+++.|+ .+-|....+.|.|
T Consensus 63 ~~eRRrRav~Rg~~~LD~Ld~Lk~aLL~G~~~~~~L~~L~~~~~e~r~-------------------~s~DP~L~~vL~E 123 (138)
T PRK12787 63 PTERRRRSVRRGETALDVLDELKIGLLSGTLDAATLARLRRAVRELRA-------------------ASGDPGLDAVLDE 123 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-------------------CCCChhHHHHHHH
Confidence 46777774 44445554 5577777777665443 4456677788888
Q ss_pred hhh-hhhHHHHHHH
Q 003668 741 IAQ-AETDIINLKQ 753 (804)
Q Consensus 741 i~~-~e~~~~~l~~ 753 (804)
|=+ +|..++||++
T Consensus 124 IElRa~VELAKl~~ 137 (138)
T PRK12787 124 IELRVEVELAKLGQ 137 (138)
T ss_pred HHHHHHHHHHHhcc
Confidence 854 5666677654
No 354
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.72 E-value=1.1e+02 Score=32.64 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC
Q 003668 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI 730 (804)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~ 730 (804)
+-+|.++.+|..--+.-++-|+.+| .-|+++.-+||||+-+|..|..=+..--.|+.-++.+.-.+|.-..+
T Consensus 58 ~e~e~l~~~l~etene~~~~neL~~--------ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~ 129 (246)
T KOG4657|consen 58 VELENLKADLRETENELVKVNELKT--------EKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQA 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred ChhhHHHHhhhhhhhhHH
Q 003668 731 DEKTKVELGEIAQAETDI 748 (804)
Q Consensus 731 ~~~~~~~l~~i~~~e~~~ 748 (804)
-.|+++.--+.-+=+|++
T Consensus 130 ~~Ka~e~~~kRkQdsa~~ 147 (246)
T KOG4657|consen 130 LSKAKENAGKRKQDSADI 147 (246)
T ss_pred HHHHHHHHHHHHhhhhcc
No 355
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.68 E-value=5.7e+02 Score=32.23 Aligned_cols=87 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred CchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003668 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK---------ALHERRLALENDVARLKDQLQKERDKRTAME 714 (804)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~ 714 (804)
++-|-+-+-|+..--.|...|+ +|=||-||.|.+ .|...|-.++-||-++|+.+.-++.+-
T Consensus 312 gdseqatkylh~enmkltrqka------dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~el---- 381 (1265)
T KOG0976|consen 312 GDSEQATKYLHLENMKLTRQKA------DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL---- 381 (1265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----
Q ss_pred hhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 003668 715 AGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRV 760 (804)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~ 760 (804)
|.+|++-|-.+..+-.||-+|-.|..
T Consensus 382 --------------------qsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 382 --------------------QSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHhhhhhhh
No 356
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=23.37 E-value=3.3e+02 Score=29.47 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=57.6
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Q 003668 646 NEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQ---------------------LQ 704 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~---------------------l~ 704 (804)
--+.|++|-.--.-||-++.+..-.+..|||+++. |.| .|-+|.-.+..||+. -+
T Consensus 14 ~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dE---a~~-L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~ 89 (277)
T PF15030_consen 14 LRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDE---ATR-LQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCR 89 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHH
Confidence 34678888888888888888888888888888764 211 122333333333332 22
Q ss_pred HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHH
Q 003668 705 KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINL 751 (804)
Q Consensus 705 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l 751 (804)
+--.|.+-|-..|....+ ....+-+-++..+.++|+||-+-.=|
T Consensus 90 eRn~Li~~llqel~RHg~---~~~lLse~a~~mv~DvALaEYaAtFL 133 (277)
T PF15030_consen 90 ERNRLITHLLQELHRHGP---ANHLLSELAQSMVNDVALAEYAATFL 133 (277)
T ss_pred HHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222233333222322221 22446778899999999999765544
No 357
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.33 E-value=2.7e+02 Score=24.95 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 655 DTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (804)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~ 704 (804)
..+.++..+|+--+-+...++-.+=.=-++-..-+.+-|.++.||+.||.
T Consensus 25 ~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 25 HQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777665544444444556667777777777775
No 358
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.32 E-value=3.9e+02 Score=25.79 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 659 DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (804)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~ 704 (804)
.++..|+.=-..-...++.|+.-+....++|..||+++..++..+.
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444443322333334444555555555566666666665555544
No 359
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.15 E-value=4.3e+02 Score=27.34 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=29.8
Q ss_pred ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 731 DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 731 ~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
+.++.....+|..+|..+..++++.......+..+.+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~ 198 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELE 198 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888899999999998888888887776665543
No 360
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.03 E-value=3.2e+02 Score=27.72 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=45.0
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 003668 672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTA----MEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (804)
Q Consensus 672 ~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (804)
+.|++..++=+..+..-|..|.+|+.+|+.-++-+.+++.. ....++.. |-.-....-.+|+.+.++
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k---------i~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK---------IQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 44666666666677777777778888887766655443321 11222211 222233344567888899
Q ss_pred HHHHHHHHH
Q 003668 748 IINLKQKAK 756 (804)
Q Consensus 748 ~~~l~~~~~ 756 (804)
+..+|..+-
T Consensus 147 iE~~K~~~l 155 (177)
T PF07798_consen 147 IESLKWDTL 155 (177)
T ss_pred HHHHHHHHH
Confidence 888877653
No 361
>PRK11281 hypothetical protein; Provisional
Probab=22.94 E-value=6.4e+02 Score=33.21 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=33.8
Q ss_pred HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 665 ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
..|..+|..||.=+..|-.-+..+-.++|+.|..||+++-+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999988887776666777799999999998866
No 362
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.89 E-value=3.6e+02 Score=31.45 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 003668 682 KKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 682 ~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~ 761 (804)
.+|...++.+..+|.+++..-+..=.+-++.|+.-|.. +.......=.+|...++++.+++++++++..+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~----------~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKS----------LETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhc
Q 003668 762 LSEQLEKN 769 (804)
Q Consensus 762 l~~~~~~~ 769 (804)
|++-..+.
T Consensus 103 l~~l~~q~ 110 (420)
T COG4942 103 LNALEVQE 110 (420)
T ss_pred HHHHHHHH
No 363
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=22.76 E-value=3.5e+02 Score=27.21 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 003668 682 KKALHERRLALENDVARL--KDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 682 ~~~~~~~r~~le~~v~~l--~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l 758 (804)
|..+.-||...+.++.+| -.||-+--+.-.-.|+ ..|-.|.+++.+-++.+|..|+.|-..|+.-
T Consensus 72 K~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea------------~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEA------------MRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666667777776 5555554443333332 2234455666666666666666665555543
No 364
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.75 E-value=4.1e+02 Score=32.88 Aligned_cols=102 Identities=17% Similarity=0.333 Sum_probs=60.0
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC
Q 003668 646 NEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNG 722 (804)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~ 722 (804)
-+..+.+|-..-..||.+.+.+--.++|||-||+-|-..+.=-|.. |-.|..+-|+-.+.=..--++.|.+|..
T Consensus 329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~--- 405 (739)
T PF07111_consen 329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKL--- 405 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3455777777888999999999999999999998887655433332 4444444443332211111222222211
Q ss_pred CCCCCCCCChhhHHHHhhhhhhhhHHHHHHH
Q 003668 723 SFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753 (804)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~ 753 (804)
....+.+-...+....|.+|.+|++|..
T Consensus 406 ---v~eav~S~q~~L~s~ma~ve~a~aRL~s 433 (739)
T PF07111_consen 406 ---VSEAVSSSQQWLESQMAKVEQALARLPS 433 (739)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111333345667777778877777665
No 365
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.70 E-value=95 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003668 748 IINLKQKAKDLRVQLSE 764 (804)
Q Consensus 748 ~~~l~~~~~~l~~~l~~ 764 (804)
|.-|+|+|..|+.||..
T Consensus 1 i~aLrqQv~aL~~qv~~ 17 (46)
T PF09006_consen 1 INALRQQVEALQGQVQR 17 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 34567777777776654
No 366
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.64 E-value=8.7e+02 Score=25.14 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCC
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQK-ERDKRTAMEAGLGEFNGS 723 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~~l~~-e~~~~~~l~~~~~~~~~~ 723 (804)
..+.++|.-..-|..-|. -++..|.+=++++...... ||+++..++....+ |.....||..|
T Consensus 16 ~~ld~~EDP~~~l~q~ir-------d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g------- 81 (221)
T PF04012_consen 16 ELLDKAEDPEKMLEQAIR-------DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG------- 81 (221)
T ss_pred HHHHhhcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------
Q ss_pred CCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003668 724 FPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 724 ~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~ 768 (804)
=++-+++-|..+..+|..+..|++.+..+..++.+-+..
T Consensus 82 ------~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~ 120 (221)
T PF04012_consen 82 ------REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ 120 (221)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 367
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.48 E-value=2.6e+02 Score=27.98 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=42.7
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK-----ALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~r~~le~~v~~l~~~l~~ 705 (804)
..+..|+..-.+|+.+++.--+.+..|++.|-.=.. .|...--+|+++++.|++.|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888888776655 4455556677777777777764
No 368
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=22.37 E-value=3.2e+02 Score=31.18 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003668 675 EASLESRKKALHERRLALENDVARLKDQLQK 705 (804)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~ 705 (804)
+|-+++-|++|.+-|.+++..+..||.|+..
T Consensus 133 ~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~ 163 (377)
T KOG2896|consen 133 RAHLEKTKQKLEDKRQQFNASQVKLQKQLKS 163 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7888888999999999999999999998873
No 369
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=22.30 E-value=1.1e+02 Score=35.45 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=28.3
Q ss_pred CChhhhHHHHHHHHhhCCCCCCChhhHHHHHHHH
Q 003668 293 EDAHIIADCVKYVIRELPSSPVPASCCNALLEAR 326 (804)
Q Consensus 293 ~d~h~vAslLK~fLReLPePLlp~~l~~~~l~a~ 326 (804)
.|+|..++..|.|+|.+|+|++|-++---+-.|.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 3899999999999999999999977655555554
No 370
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.29 E-value=2.9e+02 Score=25.87 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=25.2
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHH
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRKKAL 685 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (804)
|.+|.+....+..-|+.....|..|++.+..=.+++
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~ 62 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAV 62 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666667778777788888888777554433
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.22 E-value=5e+02 Score=30.19 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 003668 735 KVELGEIAQAETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 735 ~~~l~~i~~~e~~~~~l~~~~~~l~~~ 761 (804)
+-++..+-.+|++-.++-++..+|+.|
T Consensus 79 ~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 79 KTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555556666666666666555544
No 372
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.18 E-value=9.7e+02 Score=28.77 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=11.1
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHH
Q 003668 738 LGEIAQAETDIINLKQKAKDLRVQL 762 (804)
Q Consensus 738 l~~i~~~e~~~~~l~~~~~~l~~~l 762 (804)
|..++.+-+.|..|++-+......+
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 373
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=22.04 E-value=5.1e+02 Score=31.68 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=35.3
Q ss_pred CCCCchh---hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 003668 641 DGPSDNE---VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARL---KDQLQKERDKRTAME 714 (804)
Q Consensus 641 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l---~~~l~~e~~~~~~l~ 714 (804)
++|.+.+ .-..|||..|.-||.++. +|--.+|..++...+--.-||.--.+| .|+||.|.--|.+||
T Consensus 101 ~s~~~~~~yQerLaRLe~dkesL~LQvs-------vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLE 173 (861)
T KOG1899|consen 101 VSCPEYPEYQERLARLEMDKESLQLQVS-------VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLE 173 (861)
T ss_pred ccCCcchHHHHHHHHHhcchhhheehHH-------HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHH
Confidence 4444433 345678888887776653 233334444444433333333332222 456666666666666
Q ss_pred h
Q 003668 715 A 715 (804)
Q Consensus 715 ~ 715 (804)
.
T Consensus 174 T 174 (861)
T KOG1899|consen 174 T 174 (861)
T ss_pred H
Confidence 5
No 374
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.86 E-value=6.6e+02 Score=30.79 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=52.2
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP 727 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~ 727 (804)
..|+.|+.....++.+|++--..=..++. +-+.+.+....|++++.+++++..+-..+..+++.+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLR----QLETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 37788888888888877632222222222 222344444456666666666665555555544432
Q ss_pred CCCChhhHHHHhhhhh--hhhHHHHHHHHHHHHHHHHHH
Q 003668 728 DTIDEKTKVELGEIAQ--AETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~--~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.++++.|+++.. .+.-+..|+.++.+.-.+|..
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 244556665432 333355566666666555554
No 375
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=21.86 E-value=7.7e+02 Score=25.87 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003668 750 NLKQKAKDLRVQLSE 764 (804)
Q Consensus 750 ~l~~~~~~l~~~l~~ 764 (804)
+-+.++.+|.-||+.
T Consensus 136 ~YesRI~dLE~~L~~ 150 (196)
T PF15272_consen 136 AYESRIADLERQLNS 150 (196)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666663
No 376
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.49 E-value=3.7e+02 Score=22.78 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 003668 692 LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (804)
Q Consensus 692 le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l 758 (804)
++.+++||+++|.+=..--..++.-|+...-----|..+ ..++-+..+.+++.+.+|++.+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eV---ve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEV---VEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCH---HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888877766555566666665432211112222 2223333444455555555555544
No 377
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.33 E-value=4.5e+02 Score=26.80 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC
Q 003668 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP 727 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~ 727 (804)
+.|.|+=..-.+|-..-++-...........+..++...+---.+++++++|+++|.+
T Consensus 115 l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---------------------- 172 (192)
T PF05529_consen 115 LVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---------------------- 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----------------------
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 003668 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (804)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~ 761 (804)
+|+++..||.+...|+.+
T Consensus 173 ----------------~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 173 ----------------KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred ----------------HHHHHHHHHHHHHHHHhh
No 378
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=21.30 E-value=1.5e+02 Score=29.09 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=35.1
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHH
Q 003668 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALEND 695 (804)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~ 695 (804)
|+.++-||.+..-|..-|.+--...+..|+..+.|.++|.++|..++++
T Consensus 20 e~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 68 (135)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556777777777777776666666677777777777777777777765
No 379
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.25 E-value=5.8e+02 Score=33.18 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=50.7
Q ss_pred hhhhhhhcchHHHHHHHHH---hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCC
Q 003668 648 VEIQRLEDTKSDLQRKIAD---EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF 724 (804)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~ 724 (804)
..|+.||.--.+||..|-. +-..=..-++.++++-+.|.+.|.+++.....+.-.+.+...- + +...
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~------~-e~~~--- 730 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT------A-EEKQ--- 730 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------h-hhhh---
Confidence 4577777777777764421 0011111233444444444444444444443333333222211 1 2222
Q ss_pred CCCCCCChhh---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003668 725 PIPDTIDEKT---KVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 725 ~~~~~~~~~~---~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
.....+++.. +..+.+|..-|+.+.+|+.++..+....++
T Consensus 731 ~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e 773 (1074)
T KOG0250|consen 731 VDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQE 773 (1074)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444 345567777777777777777666554443
No 380
>PF13514 AAA_27: AAA domain
Probab=21.23 E-value=1.4e+03 Score=30.10 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=73.2
Q ss_pred CcCCCCCCchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhH------------HHHHHHHHHHHHH---HHHHHHHHHH
Q 003668 637 MESIDGPSDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASL------------ESRKKALHERRLA---LENDVARLKD 701 (804)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~r~~---le~~v~~l~~ 701 (804)
.+.++++.+....+++++.....++.+|..-...-+.|++.+ +-+=.+|++.+.+ .++|..+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777776666643333333333322 2233467766655 4556666666
Q ss_pred HHHHHHhHHHHHHhhhcCCCCCCC------CCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 702 QLQKERDKRTAMEAGLGEFNGSFP------IPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 702 ~l~~e~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
++..-..--..|...|. ..+... .+...-..+++++.+-..+++.+..+..+..+...++.+-++
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 381 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQA 381 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433344445555 222221 112222345566666677777777777777777777765443
No 381
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.04 E-value=3.1e+02 Score=28.10 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHH
Q 003668 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKA 755 (804)
Q Consensus 676 ~~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~ 755 (804)
+.++.|.+-|.+.+..|++.++.|+++|..=-+.=. +.++ =+-+.++||++ +.+-+|||.+
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv---------sYql-------l~hr~e~ee~~---~~l~~le~~~ 141 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQLQQKADDVV---------SYQL-------LQHRREMEEML---ERLQKLEARL 141 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHH-------HHhHHHHHHHH---HHHHHHHHHH
Confidence 445578888999999999999998888764322211 0111 02377788776 4567788888
Q ss_pred HHHHHHHH
Q 003668 756 KDLRVQLS 763 (804)
Q Consensus 756 ~~l~~~l~ 763 (804)
..+.-+.+
T Consensus 142 ~~~e~~~~ 149 (175)
T PRK13182 142 KKLEPIYI 149 (175)
T ss_pred HHHHhhcc
Confidence 77654443
No 382
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.01 E-value=3.3e+02 Score=32.05 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 003668 678 LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKD 757 (804)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~ 757 (804)
|..|+..|..+=..|+.++++|+++|++.. ..+...-+.+|..+++|.+...-
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e---------------------------~rl~~qF~ame~~~s~mns~~s~ 456 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATI---------------------------ARYKAQFTQLDKLMTSLNSTSSY 456 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777777776522 23445678888888888888888
Q ss_pred HHHHH
Q 003668 758 LRVQL 762 (804)
Q Consensus 758 l~~~l 762 (804)
|..||
T Consensus 457 L~~q~ 461 (462)
T PRK08032 457 LTQQF 461 (462)
T ss_pred HHHhh
Confidence 87776
No 383
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=20.82 E-value=3.9e+02 Score=21.97 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003668 696 VARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 696 v~~l~~~l~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
+..|+.+|+.|+.++..-|+-+..... +. .-++.|+.-+..-.+++.-|+.+|.
T Consensus 3 l~~L~~ki~~E~~i~~Gae~m~~~~~~--------~~------k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 3 LEDLRRKIEKELKVKEGAENMRKLTSN--------DR------KVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------cH------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999988875543221 11 3456677778888899999988874
No 384
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=4.1e+02 Score=24.97 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=30.4
Q ss_pred HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhh----hhhhhHHHHHHHHHHHHHHHHH
Q 003668 706 ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEI----AQAETDIINLKQKAKDLRVQLS 763 (804)
Q Consensus 706 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~i----~~~e~~~~~l~~~~~~l~~~l~ 763 (804)
|..+|+.|+.+|+. ||==++++.+-. +-+-+..+.|+++++.|..+|+
T Consensus 39 E~~~r~~~q~~lnk----------LDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 39 EKAFRAQLQRQLNK----------LDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHhh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777755 555555555432 2234456668888888888876
No 385
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=20.44 E-value=1.3e+02 Score=35.44 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=42.1
Q ss_pred HHHhhhcch--hHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 003668 664 IADEVKGNE--ILEA-SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (804)
Q Consensus 664 ~~~~~~~~~--~~~~-~~~~~~~~~~~~r~~le~~v~~l~~~l~~e~~~~~~l~~~~~~ 719 (804)
|-+|+++|- +||. ||-----||...=.+|.||-+++.++|.+|+.+|+-||.-|-.
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k 655 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRK 655 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777763 3332 3333344888888899999999999999999999999987643
No 386
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.38 E-value=1.2e+02 Score=32.82 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHH
Q 003668 684 ALHERRLALENDVARL---KDQLQKE 706 (804)
Q Consensus 684 ~~~~~r~~le~~v~~l---~~~l~~e 706 (804)
.|.+||.+|+.+|+.| ++|+++|
T Consensus 8 eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 8 ELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544 3445444
No 387
>PLN02320 seryl-tRNA synthetase
Probab=20.38 E-value=2.2e+02 Score=33.99 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=21.7
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003668 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (804)
Q Consensus 733 ~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~ 767 (804)
..+++++++..+-..+..||+++..+..+|.+...
T Consensus 131 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 131 ERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666443
No 388
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.35 E-value=2.3e+02 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=26.3
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003668 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (804)
Q Consensus 733 ~~~~~l~~i~~~e~~~~~l~~~~~~l~~~l~~~~~~ 768 (804)
.+.++++++..+...+..||++...+..++.+....
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777778888888888888887776543
No 389
>PRK11239 hypothetical protein; Provisional
Probab=20.15 E-value=1.2e+02 Score=32.01 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 003668 742 AQAETDIINLKQKAKDLRVQLSE 764 (804)
Q Consensus 742 ~~~e~~~~~l~~~~~~l~~~l~~ 764 (804)
+.+|+.|..||++|++|..+|.+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~ 208 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 390
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.15 E-value=4.1e+02 Score=34.90 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 003668 695 DVARLKDQLQKE 706 (804)
Q Consensus 695 ~v~~l~~~l~~e 706 (804)
+...+|++|+.+
T Consensus 117 ~L~~~q~~l~~~ 128 (1109)
T PRK10929 117 QLLEKSRQAQQE 128 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 344555566655
No 391
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=20.12 E-value=82 Score=32.53 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=17.0
Q ss_pred CCcchhhhhh-cccccCCCCCCccc
Q 003668 372 MSTSAVAACM-APLLLRPLLAGECE 395 (804)
Q Consensus 372 Mt~~NLAv~F-gPtLlrp~~~~~~~ 395 (804)
|.+.|+|.|+ +|+|+.|..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (195)
T PRK15361 1 MEASNVALVLPAPSLLTPSSTPSPS 25 (195)
T ss_pred CCccceeeeecCccccCCCCCCCCC
Confidence 6678888654 89999987544433
No 392
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.03 E-value=3.8e+02 Score=27.52 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=0.4
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHH
Q 003668 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALEND 695 (804)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~ 695 (804)
|+-++..-..||.-++.=-|.++.|+..|-.=..++.+.+..+..+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~ 114 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEK 114 (194)
T ss_dssp ---------------------------------------------H
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 3444444555555555555666666665554444444444444333
No 393
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.02 E-value=1.9e+02 Score=36.85 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=15.6
Q ss_pred ccccCCCCCCCCcCCCCCcccccccc
Q 003668 605 CLEKSSPVSNESVYGSKRPTVWGRTA 630 (804)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (804)
|..-+.--+.....|+-| -+||-++
T Consensus 512 ~VNGs~v~~~t~L~~GdR-iLwGnnH 536 (1714)
T KOG0241|consen 512 CVNGSLVCSTTQLWHGDR-ILWGNNH 536 (1714)
T ss_pred eecCceeccccccccCce-EEecccc
Confidence 333333334446677889 9999875
Done!