Query 003668
Match_columns 804
No_of_seqs 412 out of 2452
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:02:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003668.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1718-1721//hhsearch_pdb/003668hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7c_A Rhogap protein; GTPase 1.0 1 1 322.0 14.6 210 174-440 1-221 (231)
2 3byi_A RHO GTPase activating p 1.0 1 1 316.7 18.2 205 215-438 4-214 (214)
3 3fk2_A Glucocorticoid receptor 1.0 1 1 315.7 16.9 196 224-438 48-246 (246)
4 3iug_A RHO/CDC42/RAC GTPase-ac 1.0 1 1 312.7 16.7 208 221-442 12-226 (229)
5 2ee4_A RHO GTPase activating p 1.0 1 1 312.1 16.0 197 226-441 9-208 (209)
6 3msx_B RHO GTPase-activating p 1.0 1 1 311.5 16.4 194 224-435 7-201 (201)
7 1ow3_A RHO-GTPase-activating p 1.0 1 1 307.9 17.2 195 224-438 39-237 (242)
8 1tx4_A P50-rhogap; complex (GT 1.0 1 1 306.6 17.1 192 224-435 3-198 (198)
9 3cxl_A N-chimerin; SH2, RHO-GA 1.0 1 1 305.7 16.6 192 226-435 266-463 (463)
10 2osa_A N-chimaerin; RHO-GAP, G 1.0 1 1 303.7 18.6 191 227-435 6-202 (202)
No 1
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=1.00 E-value=1 Score=321.97 Aligned_cols=210 Identities=24% Similarity=0.341 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHCCC----CCCHHHH
Q ss_conf 521288899999977404899998886655323430221067111100468999812466567642089----9858999
Q 003668 174 SLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVD----GTPSFLE 249 (804)
Q Consensus 174 SeeE~~eWI~AL~~ai~~aP~~~~~~~~n~~~~~~~~~~~~~s~~~~~~k~~k~~vFGvpLe~ll~~~~----~vP~iI~ 249 (804)
||+|++.|+.+|++.. ++||+||...+++.. .+|.+|.
T Consensus 1 ~e~~~~~W~~~m~~~~--------------------------------------pvfgvpl~~~~~~~~~l~~~~p~iv~ 42 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGRE--------------------------------------PVYNSNKDNQSEGTAQLDSIGFSIIK 42 (231)
T ss_dssp --------------------------------------------------------------------CCSSHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCC--------------------------------------CCCCCCCHHCCCCCCCCCCCCCCHHH
T ss_conf 9678999999708999--------------------------------------84378600024443215776760999
Q ss_pred HHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH-HHCCC---CCCC--CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999997099558904308998899999999-74299---8999--998813337789998710999998945599999
Q 003668 250 KAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGK---TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (804)
Q Consensus 250 ~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~-ld~g~---~~~~--~~~Dv~~vAslLK~fLReLPePLlp~~ly~~li 323 (804)
+|+.+|+++|+.+|||||++|+.++|+++++. +|.+. .++. ..+|+|+||++||.|||+||+||+|+++|+.|+
T Consensus 43 ~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~ 122 (231)
T 1f7c_A 43 KCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFI 122 (231)
T ss_dssp HHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999998489978715537849999999999867477766684223336699999999999987898778999999999
Q ss_pred HHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9980493-579999999999209956898999999989999852034799810023643022158887796544344566
Q 003668 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (804)
Q Consensus 324 ~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvFaPsLLrp~~~~~~~ie~~~~~ 402 (804)
.+.+..+ ++|+..++.++. +||++|+.+|+||+.||++|+.|++.|+|++.|||+||||+|+|++.....
T Consensus 123 ~~~~~~~~~~r~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~-------- 193 (231)
T 1f7c_A 123 KAAKLENQESRVSEIHSLVH-RLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVA-------- 193 (231)
T ss_dssp HHHTCSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCS--------
T ss_pred HHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHH--------
T ss_conf 99852899999999999999-799999999999999999999637777898899999962420788866688--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89982899999999889999999999622322588889
Q 003668 403 GGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (804)
Q Consensus 403 ~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~~~ 440 (804)
+.+.....+.+|++||+||+.||++.+-
T Consensus 194 ----------~~~~~~~~~~vve~LI~~~~~iF~~~~~ 221 (231)
T 1f7c_A 194 ----------AIMDIKFQNIVIEILIENHEKIFNTVPE 221 (231)
T ss_dssp ----------GGGGHHHHHHHHHHHHHTHHHHHHSCCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ----------9987799999999999979986799999
No 2
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=316.66 Aligned_cols=205 Identities=26% Similarity=0.438 Sum_probs=178.7
Q ss_pred CCHHHHCCC-CCCCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC-CCCCC
Q ss_conf 711110046-89998124665676420-8998589999999999709955890430899889999999974299-89999
Q 003668 215 GSVEQLKEK-PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSP 291 (804)
Q Consensus 215 ~s~~~~~~k-~~k~~vFGvpLe~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~-~~~~~ 291 (804)
++.+.++++ ..+..+||+||+.++.. +..+|.+|.+|+.+|+.+|+.+|||||++|+.++++++++.+|.|. ..+..
T Consensus 4 ps~~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~ 83 (214)
T 3byi_A 4 PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDD 83 (214)
T ss_dssp CCHHHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS
T ss_pred CCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 84546876388768823886799997769998969999999999828987882323787999999999982579978884
Q ss_pred --CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --988133377899987109999989455999999980493-57999999999920995689899999998999985203
Q 003668 292 --EEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN 368 (804)
Q Consensus 292 --~~Dv~~vAslLK~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~ 368 (804)
..|+|+||++||.|||+||+||+|+++|+.|+.+.+..+ ++++..++.++. +||++|+.+|+||+.||+.|+.|++
T Consensus 84 ~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~ 162 (214)
T 3byi_A 84 SQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQ-KLPPPNRDTMKVLFGHLTKIVAKAS 162 (214)
T ss_dssp GGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 555534899899999998589888999999999999866999999999999999-6899999999999999999997356
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4799810023643022158887796544344566899828999999998899999999996223225888
Q 003668 369 QNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 369 ~NkMt~~NLAvvFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~ 438 (804)
.|+|++.|||+||||+|+|++.. + .+ .+.....++.+|++||+||+.||+++
T Consensus 163 ~NkM~~~NLa~vf~P~Ll~~~~~------~-------~~-----~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 163 KNLMSTQSLGIVFGPTLLRAENE------T-------GN-----MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHCCCHHHHHHHHHHHHHCCTTS------S-------SC-----HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCCCCHHHHHHHHCCCCCCCCCC------C-------HH-----HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77998798699864503788875------3-------77-----99987999999999999799856999
No 3
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=315.67 Aligned_cols=196 Identities=22% Similarity=0.433 Sum_probs=175.0
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC-CCC-CCCCHHHHHHH
Q ss_conf 8999812466567642089985899999999997099558904308998899999999742998-999-99881333778
Q 003668 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFS-PEEDAHIIADC 301 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~-~~~-~~~Dv~~vAsl 301 (804)
..++.+||+||+.++..++.||.+|.+|+.+|+++|+.+|||||++|+.+.|++|++.+|.|.. .+. .++|+|+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 66788538778999628999892999999999982998788367478477999999999659997855466769999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99987109999989455999999980493-57999999999920995689899999998999985203479981002364
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (804)
Q Consensus 302 LK~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvv 380 (804)
||.|||+||+||+|+++|+.|+.+.+..+ ++++..++.++. +||..|+.+|+||+.||+.|+.+++.|+||+.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLK-KFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 999998589866889999999988524877999999999999-7899999999999999999986357668965775787
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 3022158887796544344566899828999999998899999999996223225888
Q 003668 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 381 FaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~ 438 (804)
|||+||||... + +.+.......+.+|++||+||++||.++
T Consensus 207 f~P~Llrp~~~------~------------~~~~~~~~~~~~ive~LI~~~~~iF~n~ 246 (246)
T 3fk2_A 207 FWPTLMRPDFS------T------------MDALTATRTYQTIIELFIQQCPFFFYNR 246 (246)
T ss_dssp HHHHHHCCCSS------S------------SCHHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HCCCCCCCCCC------C------------HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 40620388975------4------------7799988999999999999679863898
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.71 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=175.9
Q ss_pred CCC-CCCCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCC---CCC
Q ss_conf 046-89998124665676420-899858999999999970995589043089988999999997429989-999---988
Q 003668 221 KEK-PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSP---EED 294 (804)
Q Consensus 221 ~~k-~~k~~vFGvpLe~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~~-~~~---~~D 294 (804)
++. ..+.++||+||+.++.. +..||.+|.+|+.+|+++|+ +|||||++|+.+++++|++.++.|... +.. .+|
T Consensus 12 ~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~d 90 (229)
T 3iug_A 12 ENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQD 90 (229)
T ss_dssp ------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTC
T ss_pred CCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 788889989689665999976699889799999999998099-8887436886999999999985589888650103342
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 133377899987109999989455999999980493-5799999999992099568989999999899998520347998
Q 003668 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMS 373 (804)
Q Consensus 295 v~~vAslLK~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt 373 (804)
+|+||++||.|||+||+||+|+++|+.|+.+....+ ++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|+
T Consensus 91 vh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 169 (229)
T 3iug_A 91 IHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQ-QLPPPHYRTLEFLMRHLSLLADYCSITNMH 169 (229)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 2889999999999789977598999999999974888999999999999-799999999999999999999664735798
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 100236430221588877965443445668998289999999988999999999962232258888996
Q 003668 374 TSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442 (804)
Q Consensus 374 ~~NLAvvFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~~~s~ 442 (804)
+.|||+||||+|||++..... .. ...++.+.....+.+|++||+||+.||++...+.
T Consensus 170 ~~NLAivf~P~Ll~~~~~~~~------~~------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~~ 226 (229)
T 3iug_A 170 AKNLAIVWAPNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMA 226 (229)
T ss_dssp HHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC------
T ss_pred HHHHHHHHHCCCCCCCCCCCC------CC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 278799871340277863312------23------2178888789999999999986788079837765
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=1.00 E-value=1 Score=312.07 Aligned_cols=197 Identities=22% Similarity=0.381 Sum_probs=173.6
Q ss_pred CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CC-CCCCHHHHHHHHH
Q ss_conf 998124665676420899858999999999970995589043089988999999997429989-99-9988133377899
Q 003668 226 KFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS-PEEDAHIIADCVK 303 (804)
Q Consensus 226 k~~vFGvpLe~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~~-~~-~~~Dv~~vAslLK 303 (804)
++.+||+||+.++..+..+|.+|.+|+.+|+.+|+.++||||++|+..+++++++.++.|... +. .++|+|+||++||
T Consensus 9 ~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK 88 (209)
T 2ee4_A 9 ESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALK 88 (209)
T ss_dssp CCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHH
T ss_pred CCCEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99960886899973699989299999999998199878731068989999999999855899885567888999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC
Q ss_conf 987109999989455999999980493-5799999999992099568989999999899998520347998100236430
Q 003668 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (804)
Q Consensus 304 ~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvFa 382 (804)
.|||+||+||+|+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.|+|++.|||+|||
T Consensus 89 ~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~ 167 (209)
T 2ee4_A 89 AFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVK-KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFW 167 (209)
T ss_dssp HHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTT-TSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 9998499866799999999999828998999999999999-789999999999999999998564442798788788733
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 22158887796544344566899828999999998899999999996223225888899
Q 003668 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSAS 441 (804)
Q Consensus 383 PsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~~~s 441 (804)
|+|+|++......+. + ....+.+|++||+||+.||+++.+.
T Consensus 168 P~L~~~~~~~~~~l~-------~-----------~~~~~~vve~LI~~~~~iF~~~~~~ 208 (209)
T 2ee4_A 168 PTLMRPDFENREFLS-------T-----------TKIHQSVVETFIQQCQFFFYNGEIV 208 (209)
T ss_dssp HHHSCCCCCSSCCSC-------C-----------CTTHHHHHHHHHHTHHHHTTCCCCC
T ss_pred CCCCCCCCCCHHHHH-------H-----------HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 611188986688999-------7-----------6999999999998569871999878
No 6
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=311.50 Aligned_cols=194 Identities=19% Similarity=0.337 Sum_probs=172.0
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89998124665676420899858999999999970995589043089988999999997429989999988133377899
Q 003668 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~~~~~~~Dv~~vAslLK 303 (804)
+.++.+||+||+.++++ +.+|.+|.+|+.+|+++|+.+|||||++|+.+.++++++.+|.|.......+|+|++|++||
T Consensus 7 ~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lLK 85 (201)
T 3msx_B 7 PMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLK 85 (201)
T ss_dssp ---CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHHH
T ss_pred CCCCCEECCCHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99988428769999608-99897999999999984998898066397899999999996169988888553778999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC
Q ss_conf 987109999989455999999980493-5799999999992099568989999999899998520347998100236430
Q 003668 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (804)
Q Consensus 304 ~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvvFa 382 (804)
.|||+||+||+|+++|+.|+.+.+..+ ++++..++.++. +||..|+.+|+||+.||++|+.|++.|+|++.|||+|||
T Consensus 86 ~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~ 164 (201)
T 3msx_B 86 DFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLD-QLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA 164 (201)
T ss_dssp HHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999589877899999999998733567999999999999-899999999999999999999653647898036555531
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 22158887796544344566899828999999998899999999996223225
Q 003668 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 383 PsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF 435 (804)
|+|||++..... . ........++.+|++||+||++||
T Consensus 165 P~ll~~~~~~~~--------------~--~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 165 PSILWPPASSSP--------------E--LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHCCCCTTSCH--------------H--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCH--------------H--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 620178977776--------------7--899999999999999997458429
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=1.00 E-value=1 Score=307.89 Aligned_cols=195 Identities=22% Similarity=0.345 Sum_probs=171.5
Q ss_pred CCCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC-CCCCCCCHHHHH
Q ss_conf 8999812466567642089---985899999999997099558904308998899999999742998-999998813337
Q 003668 224 PVKFPVIGRPILLALEDVD---GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIA 299 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~---~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~-~~~~~~Dv~~vA 299 (804)
+.+..+||+||+.++.+.. .||.+|.+|+.+|+.+|+.+|||||++|+.++++++++.+|.|.. ++....|+|++|
T Consensus 39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va 118 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPA 118 (242)
T ss_dssp CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99888259759999760599888899999999999981999786256478699999999998468987722156627999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 78999871099999894559999999804935799999999992099568989999999899998520347998100236
Q 003668 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (804)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~li~~~~~~~~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAv 379 (804)
++||.|||+||+||+|+++|+.|+.+.+.+.++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+
T Consensus 119 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 197 (242)
T 1ow3_A 119 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 197 (242)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999857987778999999999986898999999999999-789999999999999999999612767899888598
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 43022158887796544344566899828999999998899999999996223225888
Q 003668 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (804)
Q Consensus 380 vFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF~e~ 438 (804)
||||+|+|++.. ..........+.+|++||+||+.||++.
T Consensus 198 vf~P~Ll~~~~~-------------------~~~~~~~~~~~~~v~~LI~~~~~iF~~~ 237 (242)
T 1ow3_A 198 VFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELFPSP 237 (242)
T ss_dssp HHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC---
T ss_pred HHCCHHCCCCCC-------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 520200787985-------------------3109999999999999999799985999
No 8
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=1.00 E-value=1 Score=306.55 Aligned_cols=192 Identities=22% Similarity=0.353 Sum_probs=169.4
Q ss_pred CCCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC-CCCCCCCHHHHH
Q ss_conf 8999812466567642089---985899999999997099558904308998899999999742998-999998813337
Q 003668 224 PVKFPVIGRPILLALEDVD---GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIA 299 (804)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~---~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~~-~~~~~~Dv~~vA 299 (804)
+.+..+||+||+.++.+.. .+|.+|.+|+.+|+++|+.+|||||++|+.++++++++.+|.|.. ++....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 99988138868999964899898898999999999980998787342178599999999998279998811046622899
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 78999871099999894559999999804935799999999992099568989999999899998520347998100236
Q 003668 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (804)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~li~~~~~~~~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAv 379 (804)
++||.|||+||+||+|+++|+.|+.+.+.+.++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 161 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999978986779999999999986898999999999999-789999999999999999998626888898898785
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43022158887796544344566899828999999998899999999996223225
Q 003668 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 380 vFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF 435 (804)
||||+|+|++.. . .........+.+|++||+||+.||
T Consensus 162 vf~P~Ll~~~~~------~-------------~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 162 VFGPNLLWAKDA------A-------------ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHCCCSSH------H-------------HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HHCCCCCCCCCC------C-------------CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 641441578986------2-------------169999999999999998489749
No 9
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=1.00 E-value=1 Score=305.69 Aligned_cols=192 Identities=19% Similarity=0.319 Sum_probs=169.4
Q ss_pred CCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC--CCCC--CCCCHHHHHH
Q ss_conf 998124665676420-8998589999999999709955890430899889999999974299--8999--9988133377
Q 003668 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFS--PEEDAHIIAD 300 (804)
Q Consensus 226 k~~vFGvpLe~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g~--~~~~--~~~Dv~~vAs 300 (804)
...+||+||+.++.. +..+|.+|.+|+.+|+.+|+.+|||||++|+.+.|++|++.||.+. .++. ...|+|+||+
T Consensus 266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~ 345 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 345 (463)
T ss_dssp CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 33223465310000369978862899899998507887862572598999999999998358767755234788001135
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 899987109999989455999999980493-5799999999992099568989999999899998520347998100236
Q 003668 301 CVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (804)
Q Consensus 301 lLK~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAv 379 (804)
+||.|||+||+||||+++|+.|+.+++..+ ++++..++.+|. +||++|+.+|++|+.||++|+.+++.|+|++.|||+
T Consensus 346 lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi 424 (463)
T 3cxl_A 346 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI 424 (463)
T ss_dssp HHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 7999998567877888999999999845999999999999998-589999999999999999998535655899899799
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43022158887796544344566899828999999998899999999996223225
Q 003668 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 380 vFaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF 435 (804)
||||+|||++.... +.+.......+.+|++||+||+.||
T Consensus 425 vf~P~Ll~~~~~~~-----------------~~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 425 VFGPTLMRSPELDA-----------------MAALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHCCCCCSCT-----------------TGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHCCCCCCCCCCH-----------------HHHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 86050268898667-----------------8899878999999999985546219
No 10
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=303.73 Aligned_cols=191 Identities=19% Similarity=0.329 Sum_probs=170.6
Q ss_pred CCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCC-C-CCCC--CCCCHHHHHHH
Q ss_conf 98124665676420-899858999999999970995589043089988999999997429-9-8999--99881333778
Q 003668 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADC 301 (804)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sG~~s~i~~L~~~ld~g-~-~~~~--~~~Dv~~vAsl 301 (804)
.++||+||+.++.. +..+|.+|.+|+.+|+++|+.+|||||++|+.++++++++.+|++ . .++. ...|+|++|++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88667886999977599989499999999998488867823306849999999999983897567774444567899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99987109999989455999999980493-57999999999920995689899999998999985203479981002364
Q 003668 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (804)
Q Consensus 302 LK~fLReLPePLlp~~ly~~li~~~~~~~-~eri~~i~~lI~~~LP~~N~~lL~~Li~~L~~Va~~s~~NkMt~~NLAvv 380 (804)
||.|||+||+||+|+++|+.|+.+.+..+ ++++..++.++. +||++|+.+|+||+.||++|+.|++.|+|++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 999999689744799999999999836999999999999999-7899999999999999999864165778998999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3022158887796544344566899828999999998899999999996223225
Q 003668 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (804)
Q Consensus 381 FaPsLLrp~~~~~~~ie~~~~~~g~~s~~l~~aa~~~~~~~~IVe~LIen~~~IF 435 (804)
|||+|+|++.. + . +.+.......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~------~--------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPEL------D--------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCC------C--------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HCCCCCCCCCC------C--------H---HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 71342799984------6--------8---8999979999999999997151049
Done!