Query 003669
Match_columns 804
No_of_seqs 692 out of 5465
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 8.8E-73 1.9E-77 616.2 23.8 365 409-783 295-661 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 1.9E-65 4E-70 583.8 28.4 375 411-794 143-527 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 2.3E-65 5E-70 590.9 28.5 364 410-783 303-670 (774)
4 CHL00176 ftsH cell division pr 100.0 1.8E-58 3.9E-63 540.7 31.8 364 412-781 177-540 (638)
5 PRK10733 hflB ATP-dependent me 100.0 4.4E-56 9.5E-61 525.6 33.7 376 413-795 147-532 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 4.8E-55 1E-59 504.7 34.1 365 409-782 46-412 (495)
7 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.3E-48 7.2E-53 472.8 26.3 295 442-752 1621-1969(2281)
8 COG1222 RPT1 ATP-dependent 26S 100.0 7.6E-48 1.7E-52 408.1 22.4 253 409-661 142-395 (406)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-41 2.6E-46 383.6 22.0 248 411-661 427-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 9.6E-41 2.1E-45 370.6 19.5 248 411-661 504-772 (802)
11 KOG0728 26S proteasome regulat 100.0 2.3E-37 5.1E-42 312.9 24.8 252 410-661 139-391 (404)
12 KOG0727 26S proteasome regulat 100.0 7.2E-37 1.6E-41 309.6 20.5 251 410-660 147-398 (408)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-37 6.9E-42 342.7 17.9 227 412-641 184-414 (802)
14 KOG0729 26S proteasome regulat 100.0 1.3E-36 2.8E-41 309.7 15.2 252 410-661 169-421 (435)
15 KOG0652 26S proteasome regulat 100.0 2.9E-36 6.2E-41 306.4 17.4 248 412-659 165-413 (424)
16 KOG0726 26S proteasome regulat 100.0 9.6E-37 2.1E-41 314.1 13.9 252 410-661 177-429 (440)
17 PTZ00454 26S protease regulato 100.0 7.9E-35 1.7E-39 325.8 29.3 252 410-661 137-389 (398)
18 KOG0736 Peroxisome assembly fa 100.0 4.5E-35 9.8E-40 332.6 21.5 248 412-661 666-935 (953)
19 COG0466 Lon ATP-dependent Lon 100.0 1.4E-34 3E-39 329.1 24.5 465 124-657 63-583 (782)
20 KOG0738 AAA+-type ATPase [Post 100.0 2.9E-34 6.4E-39 306.0 20.4 248 409-661 203-472 (491)
21 PRK03992 proteasome-activating 100.0 1.1E-33 2.5E-38 317.2 23.0 251 411-661 124-375 (389)
22 PTZ00361 26 proteosome regulat 100.0 1.5E-33 3.2E-38 317.6 23.0 251 410-660 175-426 (438)
23 COG1223 Predicted ATPase (AAA+ 100.0 8.3E-34 1.8E-38 288.9 17.1 240 413-659 116-356 (368)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-32 2.5E-37 310.3 18.8 226 413-641 662-888 (952)
25 TIGR01242 26Sp45 26S proteasom 100.0 9.8E-32 2.1E-36 299.6 23.4 248 411-658 115-363 (364)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 6.3E-32 1.4E-36 308.6 21.1 242 413-661 223-466 (489)
27 TIGR01243 CDC48 AAA family ATP 100.0 8E-32 1.7E-36 325.0 23.2 248 412-661 447-713 (733)
28 COG0464 SpoVK ATPases of the A 100.0 1.1E-31 2.3E-36 310.8 22.7 247 410-659 234-484 (494)
29 KOG0651 26S proteasome regulat 100.0 5.9E-32 1.3E-36 281.7 11.4 250 410-659 124-374 (388)
30 KOG0739 AAA+-type ATPase [Post 100.0 7.1E-31 1.5E-35 271.6 17.8 227 409-641 124-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-30 3.3E-35 278.2 19.0 228 409-641 83-314 (386)
32 COG0542 clpA ATP-binding subun 100.0 1.7E-30 3.6E-35 304.0 12.7 295 205-603 357-707 (786)
33 TIGR03689 pup_AAA proteasome A 100.0 7E-29 1.5E-33 283.3 21.9 266 409-676 173-497 (512)
34 KOG0730 AAA+-type ATPase [Post 100.0 3.7E-28 8.1E-33 274.8 19.6 287 413-717 180-477 (693)
35 PRK10865 protein disaggregatio 100.0 1.2E-27 2.6E-32 291.2 22.9 360 208-603 368-781 (857)
36 TIGR00763 lon ATP-dependent pr 99.9 1.6E-26 3.5E-31 279.9 27.8 405 127-601 56-505 (775)
37 PLN00020 ribulose bisphosphate 99.9 3E-26 6.5E-31 247.7 22.0 230 445-687 142-393 (413)
38 TIGR01243 CDC48 AAA family ATP 99.9 3.4E-26 7.3E-31 276.3 22.8 246 413-661 173-438 (733)
39 PRK10787 DNA-binding ATP-depen 99.9 1.3E-25 2.7E-30 270.2 27.4 452 127-656 66-580 (784)
40 TIGR03346 chaperone_ClpB ATP-d 99.9 4.7E-26 1E-30 278.2 24.1 397 207-637 362-824 (852)
41 KOG0741 AAA+-type ATPase [Post 99.9 7E-27 1.5E-31 256.8 13.3 247 413-660 214-492 (744)
42 TIGR03345 VI_ClpV1 type VI sec 99.9 7.2E-26 1.6E-30 275.0 22.5 384 204-635 373-827 (852)
43 KOG0732 AAA+-type ATPase conta 99.9 3.2E-26 6.9E-31 272.2 15.7 249 410-661 257-528 (1080)
44 KOG0740 AAA+-type ATPase [Post 99.9 1.6E-24 3.5E-29 239.7 15.9 247 409-661 144-407 (428)
45 CHL00095 clpC Clp protease ATP 99.9 4.4E-22 9.5E-27 242.8 20.0 304 205-603 365-734 (821)
46 PF01434 Peptidase_M41: Peptid 99.9 7.2E-23 1.6E-27 211.8 11.1 130 647-782 1-131 (213)
47 KOG2004 Mitochondrial ATP-depe 99.9 3E-21 6.4E-26 219.3 21.1 327 224-603 244-598 (906)
48 KOG0742 AAA+-type ATPase [Post 99.8 4.8E-18 1E-22 182.8 35.4 199 452-657 385-611 (630)
49 KOG1051 Chaperone HSP104 and r 99.8 3.3E-20 7.2E-25 220.5 6.3 310 208-566 377-711 (898)
50 KOG0743 AAA+-type ATPase [Post 99.8 2.5E-18 5.5E-23 189.4 13.6 206 415-630 198-412 (457)
51 PF00004 AAA: ATPase family as 99.8 1.6E-18 3.4E-23 163.7 8.9 130 454-587 1-132 (132)
52 PRK11034 clpA ATP-dependent Cl 99.8 1.3E-18 2.8E-23 208.5 10.1 197 388-602 421-667 (758)
53 CHL00181 cbbX CbbX; Provisiona 99.7 2.4E-17 5.1E-22 178.1 16.7 224 416-651 21-271 (287)
54 TIGR02881 spore_V_K stage V sp 99.7 3.6E-17 7.8E-22 174.5 17.8 210 417-639 5-239 (261)
55 TIGR02639 ClpA ATP-dependent C 99.7 3.8E-18 8.2E-23 206.2 11.4 231 388-636 417-709 (731)
56 KOG0744 AAA+-type ATPase [Post 99.7 3.2E-17 7E-22 172.6 13.8 201 452-656 178-412 (423)
57 TIGR02880 cbbX_cfxQ probable R 99.7 1.1E-16 2.4E-21 172.8 17.4 210 419-640 23-255 (284)
58 KOG0736 Peroxisome assembly fa 99.7 6.5E-17 1.4E-21 185.5 16.2 242 432-683 412-676 (953)
59 KOG0735 AAA+-type ATPase [Post 99.6 1.8E-15 3.9E-20 172.4 15.9 207 452-659 432-649 (952)
60 PRK00149 dnaA chromosomal repl 99.6 1.1E-15 2.3E-20 175.5 12.6 273 452-764 149-437 (450)
61 COG0464 SpoVK ATPases of the A 99.6 2.9E-14 6.3E-19 165.6 19.4 217 439-660 6-228 (494)
62 TIGR00362 DnaA chromosomal rep 99.6 6.3E-15 1.4E-19 167.0 13.5 256 452-743 137-404 (405)
63 COG0488 Uup ATPase components 99.6 6.8E-15 1.5E-19 170.1 13.7 237 310-567 217-471 (530)
64 TIGR00635 ruvB Holliday juncti 99.6 5.5E-14 1.2E-18 153.0 19.1 210 416-657 2-228 (305)
65 PRK00080 ruvB Holliday junctio 99.6 6.8E-14 1.5E-18 154.2 19.0 213 414-658 21-250 (328)
66 COG2256 MGS1 ATPase related to 99.5 4.8E-14 1E-18 153.5 13.9 177 452-659 49-239 (436)
67 PF05496 RuvB_N: Holliday junc 99.5 4.9E-14 1.1E-18 144.7 13.2 190 413-634 19-225 (233)
68 PRK14086 dnaA chromosomal repl 99.5 3.3E-14 7.2E-19 165.1 13.2 272 453-761 316-600 (617)
69 PRK14087 dnaA chromosomal repl 99.5 4.6E-14 1E-18 161.5 12.4 274 452-764 142-436 (450)
70 PRK12422 chromosomal replicati 99.5 6.6E-14 1.4E-18 159.8 13.6 269 452-758 142-425 (445)
71 PRK14088 dnaA chromosomal repl 99.5 4.9E-14 1.1E-18 161.0 12.5 274 452-761 131-419 (440)
72 COG2255 RuvB Holliday junction 99.5 3.2E-13 7E-18 141.1 17.2 214 414-659 22-252 (332)
73 TIGR02639 ClpA ATP-dependent C 99.5 2.9E-13 6.2E-18 164.0 16.3 222 415-660 179-431 (731)
74 PRK14956 DNA polymerase III su 99.5 1.2E-12 2.5E-17 148.8 17.2 210 411-655 11-243 (484)
75 PRK11034 clpA ATP-dependent Cl 99.4 1.6E-12 3.4E-17 156.4 18.4 222 416-661 184-436 (758)
76 TIGR02902 spore_lonB ATP-depen 99.4 1.3E-12 2.8E-17 152.6 16.4 213 413-656 60-330 (531)
77 PRK14962 DNA polymerase III su 99.4 1.8E-12 3.9E-17 148.8 16.6 204 412-656 8-240 (472)
78 PRK12323 DNA polymerase III su 99.4 1.2E-12 2.5E-17 152.2 14.5 207 412-653 10-244 (700)
79 COG0593 DnaA ATPase involved i 99.4 7.3E-13 1.6E-17 147.5 11.8 268 454-763 116-398 (408)
80 PRK14961 DNA polymerase III su 99.4 3.8E-12 8.3E-17 142.3 17.6 210 412-656 10-242 (363)
81 PRK14960 DNA polymerase III su 99.4 3.2E-12 6.9E-17 148.9 17.1 203 412-655 9-240 (702)
82 PRK07003 DNA polymerase III su 99.4 2.9E-12 6.4E-17 150.5 15.9 208 411-653 9-239 (830)
83 PRK06645 DNA polymerase III su 99.4 5E-12 1.1E-16 145.9 17.2 214 411-656 14-254 (507)
84 KOG2028 ATPase related to the 99.4 4.4E-12 9.6E-17 135.8 14.7 212 409-658 129-368 (554)
85 PRK06893 DNA replication initi 99.4 3.7E-12 8.1E-17 133.5 14.0 179 453-655 41-227 (229)
86 TIGR02928 orc1/cdc6 family rep 99.4 1.7E-11 3.7E-16 136.7 19.9 195 451-659 40-275 (365)
87 PRK14958 DNA polymerase III su 99.4 6.1E-12 1.3E-16 145.9 16.6 203 412-655 10-241 (509)
88 PRK13342 recombination factor 99.4 9.2E-12 2E-16 141.6 17.5 200 413-658 7-219 (413)
89 PRK05342 clpX ATP-dependent pr 99.4 1.3E-11 2.8E-16 139.5 17.5 186 452-639 109-379 (412)
90 PRK07994 DNA polymerase III su 99.4 9.7E-12 2.1E-16 146.5 16.8 208 413-655 11-241 (647)
91 PRK14964 DNA polymerase III su 99.4 1E-11 2.2E-16 142.4 16.2 204 411-655 6-238 (491)
92 PRK04195 replication factor C 99.3 1.4E-11 3.1E-16 142.7 16.9 208 410-654 6-221 (482)
93 PRK14951 DNA polymerase III su 99.3 1.6E-11 3.4E-16 144.5 17.1 208 413-655 11-246 (618)
94 TIGR00382 clpX endopeptidase C 99.3 7E-12 1.5E-16 141.1 12.9 186 452-639 117-385 (413)
95 PRK08691 DNA polymerase III su 99.3 1.4E-11 3E-16 144.8 15.7 211 411-656 9-242 (709)
96 PRK05563 DNA polymerase III su 99.3 2.3E-11 4.9E-16 142.9 16.9 203 412-655 10-241 (559)
97 PRK00411 cdc6 cell division co 99.3 3.2E-11 6.9E-16 136.0 17.4 196 451-659 55-283 (394)
98 PRK14949 DNA polymerase III su 99.3 2.3E-11 5E-16 145.5 16.7 207 412-653 10-239 (944)
99 TIGR03345 VI_ClpV1 type VI sec 99.3 1.8E-11 3.8E-16 149.9 16.2 216 414-654 183-427 (852)
100 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.1E-11 4.5E-16 126.7 13.9 179 451-655 38-225 (226)
101 PRK14963 DNA polymerase III su 99.3 4.5E-11 9.7E-16 138.5 17.2 203 411-655 7-237 (504)
102 PRK14969 DNA polymerase III su 99.3 3.5E-11 7.6E-16 140.4 16.4 208 413-655 11-241 (527)
103 TIGR02903 spore_lon_C ATP-depe 99.3 7.3E-10 1.6E-14 131.7 27.5 214 414-658 150-430 (615)
104 TIGR02397 dnaX_nterm DNA polym 99.3 5.7E-11 1.2E-15 131.9 16.2 204 411-655 7-239 (355)
105 PLN03025 replication factor C 99.3 1E-10 2.2E-15 128.6 17.7 202 410-654 5-219 (319)
106 PRK08084 DNA replication initi 99.3 5E-11 1.1E-15 125.5 14.5 177 453-655 47-233 (235)
107 PRK07940 DNA polymerase III su 99.3 3.7E-11 8E-16 135.2 14.1 190 416-630 3-214 (394)
108 PRK12402 replication factor C 99.3 1.3E-10 2.9E-15 127.9 18.1 209 411-656 8-247 (337)
109 PTZ00112 origin recognition co 99.3 9.4E-11 2E-15 138.4 17.5 190 454-661 784-1009(1164)
110 PRK14957 DNA polymerase III su 99.3 5.7E-11 1.2E-15 138.1 15.7 207 413-654 11-240 (546)
111 PRK07764 DNA polymerase III su 99.3 5.4E-11 1.2E-15 144.3 16.1 210 411-654 8-242 (824)
112 PRK08903 DnaA regulatory inact 99.3 1.6E-10 3.4E-15 120.7 17.4 174 451-656 42-224 (227)
113 PRK14959 DNA polymerase III su 99.3 7.6E-11 1.7E-15 138.0 16.2 204 411-655 9-241 (624)
114 PRK08727 hypothetical protein; 99.2 6.9E-11 1.5E-15 124.3 14.0 179 453-657 43-230 (233)
115 PRK14953 DNA polymerase III su 99.2 1.1E-10 2.3E-15 134.9 16.8 209 412-655 10-241 (486)
116 PRK07133 DNA polymerase III su 99.2 1E-10 2.2E-15 138.8 16.7 210 411-655 11-240 (725)
117 PRK05642 DNA replication initi 99.2 1.1E-10 2.4E-15 122.9 15.2 178 452-655 46-232 (234)
118 PRK14952 DNA polymerase III su 99.2 5.7E-11 1.2E-15 139.2 14.3 211 411-655 6-241 (584)
119 PRK14965 DNA polymerase III su 99.2 1E-10 2.2E-15 138.0 16.4 207 413-654 11-240 (576)
120 CHL00095 clpC Clp protease ATP 99.2 2.8E-10 6.1E-15 139.7 20.7 161 416-601 177-354 (821)
121 PRK13341 recombination factor 99.2 1.4E-10 3E-15 139.3 17.3 207 413-657 23-246 (725)
122 PRK10865 protein disaggregatio 99.2 4.8E-11 1E-15 146.5 13.7 165 414-603 174-356 (857)
123 PRK05896 DNA polymerase III su 99.2 9.3E-11 2E-15 136.6 15.0 204 411-655 9-241 (605)
124 PHA02544 44 clamp loader, smal 99.2 7.8E-11 1.7E-15 129.0 13.1 159 410-600 13-172 (316)
125 PRK09111 DNA polymerase III su 99.2 2.3E-10 5.1E-15 134.8 17.4 210 412-656 18-255 (598)
126 TIGR02640 gas_vesic_GvpN gas v 99.2 1.2E-10 2.6E-15 124.6 13.6 182 453-659 23-258 (262)
127 PRK14970 DNA polymerase III su 99.2 2.4E-10 5.2E-15 128.0 16.6 210 412-656 11-231 (367)
128 TIGR03346 chaperone_ClpB ATP-d 99.2 1.9E-10 4.1E-15 141.6 16.5 201 414-639 169-397 (852)
129 TIGR00390 hslU ATP-dependent p 99.2 1.6E-10 3.5E-15 128.8 14.1 84 511-598 248-343 (441)
130 COG2812 DnaX DNA polymerase II 99.2 1.5E-10 3.2E-15 132.8 14.1 208 412-654 10-240 (515)
131 PF00308 Bac_DnaA: Bacterial d 99.2 8E-11 1.7E-15 122.6 10.4 168 454-638 37-216 (219)
132 PRK14955 DNA polymerase III su 99.2 3.2E-10 6.9E-15 128.4 15.8 214 411-655 9-254 (397)
133 PRK08451 DNA polymerase III su 99.2 3E-10 6.4E-15 131.6 15.0 209 411-654 7-238 (535)
134 TIGR01650 PD_CobS cobaltochela 99.2 1.4E-10 3E-15 126.4 11.5 138 451-602 64-234 (327)
135 KOG0927 Predicted transporter 99.2 2.1E-10 4.5E-15 129.0 12.8 238 310-567 286-541 (614)
136 PRK06620 hypothetical protein; 99.1 2.5E-10 5.3E-15 118.6 12.1 164 452-655 45-213 (214)
137 KOG0989 Replication factor C, 99.1 8.2E-10 1.8E-14 117.0 15.5 191 409-634 27-234 (346)
138 TIGR02030 BchI-ChlI magnesium 99.1 8.6E-10 1.9E-14 121.7 16.4 134 511-660 132-311 (337)
139 PRK06647 DNA polymerase III su 99.1 4.9E-10 1.1E-14 131.5 15.1 209 412-655 10-241 (563)
140 PRK05201 hslU ATP-dependent pr 99.1 1.5E-10 3.3E-15 129.1 10.3 84 511-598 250-345 (443)
141 PRK14950 DNA polymerase III su 99.1 9.9E-10 2.1E-14 130.1 17.6 210 411-655 9-242 (585)
142 PRK14954 DNA polymerase III su 99.1 8E-10 1.7E-14 130.5 16.6 213 412-655 10-254 (620)
143 PRK06305 DNA polymerase III su 99.1 8.7E-10 1.9E-14 126.5 16.4 208 413-655 12-243 (451)
144 COG1474 CDC6 Cdc6-related prot 99.1 1.4E-09 3.1E-14 121.3 17.5 195 449-659 40-266 (366)
145 PRK13407 bchI magnesium chelat 99.1 6.5E-10 1.4E-14 122.4 13.7 217 414-659 4-307 (334)
146 PRK00440 rfc replication facto 99.1 1.8E-09 4E-14 117.8 16.2 202 411-655 10-223 (319)
147 CHL00081 chlI Mg-protoporyphyr 99.1 2.7E-09 5.9E-14 117.9 16.8 220 413-660 12-324 (350)
148 PRK14948 DNA polymerase III su 99.1 1.4E-09 3E-14 129.0 15.2 207 411-653 9-240 (620)
149 PF07724 AAA_2: AAA domain (Cd 99.1 1.7E-10 3.7E-15 115.6 6.0 110 453-567 5-131 (171)
150 cd00009 AAA The AAA+ (ATPases 99.0 6E-10 1.3E-14 105.3 9.0 119 452-586 20-150 (151)
151 PRK09087 hypothetical protein; 99.0 1E-09 2.2E-14 115.0 10.9 170 454-658 47-222 (226)
152 PRK14971 DNA polymerase III su 99.0 3.8E-09 8.3E-14 125.3 16.6 209 412-655 11-243 (614)
153 KOG0066 eIF2-interacting prote 99.0 6E-10 1.3E-14 121.8 8.7 238 310-567 476-736 (807)
154 COG1224 TIP49 DNA helicase TIP 99.0 1E-08 2.2E-13 110.5 14.7 128 511-658 292-432 (450)
155 PF05673 DUF815: Protein of un 99.0 1.3E-08 2.8E-13 106.3 15.0 190 413-632 22-243 (249)
156 COG0714 MoxR-like ATPases [Gen 98.9 3.4E-09 7.4E-14 117.1 11.2 128 452-599 44-201 (329)
157 TIGR03015 pepcterm_ATPase puta 98.9 1.6E-08 3.5E-13 107.8 15.9 188 454-658 46-266 (269)
158 TIGR02442 Cob-chelat-sub cobal 98.9 1.1E-08 2.3E-13 122.4 15.7 189 452-659 26-305 (633)
159 TIGR02031 BchD-ChlD magnesium 98.9 1.4E-08 3E-13 120.3 16.1 189 452-659 17-259 (589)
160 TIGR00678 holB DNA polymerase 98.9 7.8E-09 1.7E-13 104.8 11.7 144 449-621 12-183 (188)
161 smart00350 MCM minichromosome 98.9 1.5E-08 3.3E-13 118.2 15.7 190 453-660 238-506 (509)
162 PF07728 AAA_5: AAA domain (dy 98.9 5.8E-10 1.3E-14 107.2 2.9 109 453-579 1-139 (139)
163 PHA02244 ATPase-like protein 98.9 7.2E-08 1.6E-12 106.5 19.1 123 453-597 121-269 (383)
164 PRK10636 putative ABC transpor 98.9 6.1E-09 1.3E-13 124.8 11.6 158 310-485 213-372 (638)
165 smart00382 AAA ATPases associa 98.9 3.9E-09 8.4E-14 98.5 7.9 124 452-588 3-147 (148)
166 PRK13531 regulatory ATPase Rav 98.8 2.3E-08 4.9E-13 113.9 13.2 193 452-661 40-286 (498)
167 TIGR00368 Mg chelatase-related 98.8 2.5E-08 5.4E-13 115.6 13.3 185 453-656 213-497 (499)
168 COG1220 HslU ATP-dependent pro 98.8 1.4E-08 3.1E-13 108.6 10.0 83 512-598 252-346 (444)
169 PRK11147 ABC transporter ATPas 98.8 1.4E-08 3.1E-13 121.7 11.4 158 310-485 220-379 (635)
170 PRK05564 DNA polymerase III su 98.8 3.5E-08 7.5E-13 108.3 13.3 172 416-624 2-185 (313)
171 COG1219 ClpX ATP-dependent pro 98.8 2.4E-08 5.2E-13 106.3 10.6 99 449-550 94-202 (408)
172 PRK07471 DNA polymerase III su 98.8 5.4E-08 1.2E-12 108.8 13.9 179 413-624 14-233 (365)
173 PRK05707 DNA polymerase III su 98.8 3.4E-08 7.3E-13 109.0 11.8 155 448-624 19-198 (328)
174 PRK04132 replication factor C 98.8 5.6E-08 1.2E-12 117.8 14.3 177 447-654 559-750 (846)
175 PRK09112 DNA polymerase III su 98.8 7.2E-08 1.6E-12 107.3 14.0 187 414-632 19-242 (351)
176 PRK09862 putative ATP-dependen 98.8 7.6E-08 1.6E-12 111.2 14.1 185 454-657 213-491 (506)
177 COG0470 HolB ATPase involved i 98.8 8.9E-08 1.9E-12 104.6 14.1 129 449-598 22-178 (325)
178 PRK11331 5-methylcytosine-spec 98.7 2.9E-08 6.3E-13 112.2 9.6 120 451-586 194-356 (459)
179 KOG1969 DNA replication checkp 98.7 1.8E-07 3.8E-12 108.7 13.2 167 454-642 329-519 (877)
180 TIGR00764 lon_rel lon-related 98.6 2.6E-07 5.7E-12 109.8 14.8 102 556-659 268-392 (608)
181 COG0542 clpA ATP-binding subun 98.6 2.9E-07 6.3E-12 109.8 14.5 204 413-640 165-395 (786)
182 KOG1942 DNA helicase, TBP-inte 98.6 4E-07 8.6E-12 95.9 13.8 131 509-659 295-439 (456)
183 PRK07399 DNA polymerase III su 98.6 4.2E-07 9.1E-12 99.8 13.7 177 416-625 2-217 (314)
184 PRK06871 DNA polymerase III su 98.6 2.6E-07 5.7E-12 101.6 11.8 153 449-624 22-198 (325)
185 TIGR00602 rad24 checkpoint pro 98.6 5.4E-07 1.2E-11 106.8 14.6 220 410-655 76-352 (637)
186 PRK08058 DNA polymerase III su 98.6 2E-07 4.4E-12 103.1 9.9 132 449-599 26-180 (329)
187 PRK07993 DNA polymerase III su 98.6 3.4E-07 7.4E-12 101.3 11.6 155 448-625 21-200 (334)
188 PF07726 AAA_3: ATPase family 98.6 1.3E-08 2.9E-13 96.2 0.3 103 454-579 2-129 (131)
189 KOG0741 AAA+-type ATPase [Post 98.6 5.1E-07 1.1E-11 101.5 12.7 141 452-598 539-683 (744)
190 PTZ00111 DNA replication licen 98.5 1.2E-06 2.6E-11 106.0 16.5 125 453-596 494-652 (915)
191 PRK06964 DNA polymerase III su 98.5 1.5E-07 3.3E-12 104.0 7.9 133 449-600 19-203 (342)
192 PF05621 TniB: Bacterial TniB 98.5 2E-06 4.4E-11 92.6 16.1 213 421-654 37-285 (302)
193 KOG0745 Putative ATP-dependent 98.5 1.8E-07 3.9E-12 103.0 8.1 95 453-550 228-331 (564)
194 COG1116 TauB ABC-type nitrate/ 98.5 5.3E-08 1.2E-12 101.5 3.7 51 433-483 9-61 (248)
195 PLN03073 ABC transporter F fam 98.5 3.5E-07 7.6E-12 110.7 9.9 157 310-484 408-568 (718)
196 COG2607 Predicted ATPase (AAA+ 98.5 3.9E-06 8.4E-11 86.8 15.6 191 413-633 55-276 (287)
197 PF01078 Mg_chelatase: Magnesi 98.5 1.3E-07 2.9E-12 96.7 5.1 46 416-475 1-46 (206)
198 COG1221 PspF Transcriptional r 98.5 4.8E-07 1E-11 101.2 9.9 196 414-639 74-310 (403)
199 COG1239 ChlI Mg-chelatase subu 98.5 1.3E-06 2.8E-11 97.1 13.0 76 512-603 146-234 (423)
200 TIGR01817 nifA Nif-specific re 98.5 6.6E-07 1.4E-11 105.4 11.5 206 414-652 192-439 (534)
201 PRK13406 bchD magnesium chelat 98.5 1.9E-06 4E-11 101.8 15.0 189 452-659 26-251 (584)
202 PRK15424 propionate catabolism 98.5 1.1E-06 2.4E-11 102.7 12.8 207 415-651 216-478 (538)
203 PRK08769 DNA polymerase III su 98.5 9.2E-07 2E-11 97.1 11.3 155 449-627 24-206 (319)
204 TIGR02974 phageshock_pspF psp 98.4 2.2E-06 4.8E-11 94.8 13.6 167 452-638 23-233 (329)
205 PRK06090 DNA polymerase III su 98.4 6.8E-07 1.5E-11 98.1 9.1 132 449-599 23-178 (319)
206 TIGR02329 propionate_PrpR prop 98.4 1.7E-06 3.8E-11 101.1 12.6 210 415-653 209-465 (526)
207 smart00763 AAA_PrkA PrkA AAA d 98.4 2.1E-06 4.5E-11 95.0 12.1 81 416-503 48-141 (361)
208 PRK15064 ABC transporter ATP-b 98.4 1.4E-06 3.1E-11 102.5 11.6 60 426-485 318-379 (530)
209 KOG1514 Origin recognition com 98.4 3.3E-06 7.2E-11 98.2 14.1 193 454-661 425-658 (767)
210 COG3829 RocR Transcriptional r 98.4 1.6E-06 3.5E-11 98.8 11.4 207 413-652 240-491 (560)
211 PF06068 TIP49: TIP49 C-termin 98.4 8E-07 1.7E-11 97.6 8.6 77 511-607 279-367 (398)
212 KOG0062 ATPase component of AB 98.4 6.7E-07 1.5E-11 100.7 8.0 224 318-567 269-514 (582)
213 PF13177 DNA_pol3_delta2: DNA 98.4 6.9E-07 1.5E-11 88.8 7.2 117 449-587 17-160 (162)
214 PRK08699 DNA polymerase III su 98.4 6.6E-07 1.4E-11 98.7 7.6 131 449-599 19-183 (325)
215 PRK11608 pspF phage shock prot 98.4 2.8E-06 6.2E-11 93.9 12.6 191 417-637 5-239 (326)
216 PRK08116 hypothetical protein; 98.4 4.2E-07 9E-12 97.7 5.9 128 452-598 115-257 (268)
217 PRK05022 anaerobic nitric oxid 98.4 3.3E-06 7.1E-11 98.9 13.8 193 417-639 186-421 (509)
218 KOG0991 Replication factor C, 98.3 2E-06 4.3E-11 88.3 9.9 205 410-654 19-233 (333)
219 COG1120 FepC ABC-type cobalami 98.3 5.1E-07 1.1E-11 95.6 5.8 50 433-482 8-59 (258)
220 PRK11388 DNA-binding transcrip 98.3 3.6E-06 7.8E-11 101.3 13.2 208 415-655 322-568 (638)
221 COG2204 AtoC Response regulato 98.3 2.7E-06 5.8E-11 96.9 11.1 204 416-652 139-385 (464)
222 PRK10820 DNA-binding transcrip 98.3 4.8E-06 1E-10 97.7 13.5 206 413-651 199-447 (520)
223 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 2.7E-07 5.9E-12 97.3 2.5 53 431-483 8-62 (254)
224 KOG2227 Pre-initiation complex 98.3 1.4E-05 3E-10 89.5 14.9 183 447-642 171-383 (529)
225 COG1126 GlnQ ABC-type polar am 98.2 7E-07 1.5E-11 91.2 3.6 53 430-482 5-59 (240)
226 PRK15429 formate hydrogenlyase 98.2 1.5E-05 3.3E-10 96.7 15.3 193 415-637 373-608 (686)
227 PF00158 Sigma54_activat: Sigm 98.2 3.8E-06 8.2E-11 84.1 7.8 97 452-565 23-143 (168)
228 PRK08181 transposase; Validate 98.2 4E-06 8.6E-11 90.1 8.4 99 452-566 107-209 (269)
229 COG0606 Predicted ATPase with 98.2 3.2E-06 6.8E-11 95.3 7.8 209 415-656 176-483 (490)
230 PRK06526 transposase; Provisio 98.2 1.8E-06 3.9E-11 92.1 5.5 71 451-523 98-172 (254)
231 PRK11819 putative ABC transpor 98.2 5.1E-06 1.1E-10 98.4 9.6 58 427-484 324-383 (556)
232 COG3842 PotA ABC-type spermidi 98.2 9E-07 1.9E-11 97.7 2.9 53 431-483 9-63 (352)
233 COG1134 TagH ABC-type polysacc 98.2 2.6E-06 5.6E-11 88.7 5.9 47 440-486 40-88 (249)
234 cd03222 ABC_RNaseL_inhibitor T 98.2 1.1E-06 2.4E-11 88.7 3.0 74 448-521 20-100 (177)
235 PF00493 MCM: MCM2/3/5 family 98.1 1.1E-06 2.4E-11 97.2 3.3 190 453-659 59-327 (331)
236 KOG2035 Replication factor C, 98.1 4.2E-05 9.1E-10 80.7 14.5 152 452-622 35-221 (351)
237 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 4.5E-06 9.7E-11 98.8 8.2 58 427-484 322-381 (552)
238 PRK09183 transposase/IS protei 98.1 3.6E-06 7.8E-11 90.1 6.4 70 452-522 103-176 (259)
239 KOG2680 DNA helicase TIP49, TB 98.1 2.6E-05 5.6E-10 82.8 12.5 92 566-660 339-431 (454)
240 PF13173 AAA_14: AAA domain 98.1 8.7E-06 1.9E-10 77.5 8.3 67 454-522 5-73 (128)
241 COG4133 CcmA ABC-type transpor 98.1 1.1E-05 2.3E-10 81.0 8.3 48 438-485 13-62 (209)
242 COG4619 ABC-type uncharacteriz 98.1 1E-05 2.3E-10 79.6 8.0 55 429-483 5-61 (223)
243 KOG0480 DNA replication licens 98.1 4.5E-05 9.7E-10 88.0 14.2 227 416-661 343-646 (764)
244 cd03216 ABC_Carb_Monos_I This 98.1 4.4E-06 9.6E-11 83.0 5.5 117 437-567 10-143 (163)
245 COG1131 CcmA ABC-type multidru 98.1 1.4E-06 2.9E-11 95.0 1.8 54 431-484 8-64 (293)
246 COG1119 ModF ABC-type molybden 98.0 5.7E-06 1.2E-10 86.2 5.7 50 426-475 30-81 (257)
247 PF13401 AAA_22: AAA domain; P 98.0 1.1E-05 2.3E-10 76.2 7.2 71 453-523 6-100 (131)
248 COG1127 Ttg2A ABC-type transpo 98.0 3.1E-06 6.6E-11 87.8 3.7 57 426-482 7-65 (263)
249 COG3839 MalK ABC-type sugar tr 98.0 1.3E-06 2.7E-11 96.1 0.8 55 431-485 7-63 (338)
250 COG1241 MCM2 Predicted ATPase 98.0 1.4E-05 3.1E-10 94.8 9.5 221 417-659 285-593 (682)
251 COG3604 FhlA Transcriptional r 98.0 3.3E-05 7.2E-10 87.3 11.7 194 415-638 220-456 (550)
252 cd03214 ABC_Iron-Siderophores_ 98.0 2.3E-06 5E-11 86.3 2.0 44 439-482 11-56 (180)
253 TIGR02915 PEP_resp_reg putativ 98.0 2.6E-05 5.6E-10 89.6 10.9 176 453-651 164-382 (445)
254 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 7.1E-06 1.5E-10 79.9 5.2 81 441-521 14-99 (144)
255 cd00267 ABC_ATPase ABC (ATP-bi 98.0 5.6E-06 1.2E-10 81.4 4.5 115 441-569 13-143 (157)
256 COG0488 Uup ATPase components 98.0 6.3E-06 1.4E-10 96.2 5.6 56 431-486 7-64 (530)
257 cd03228 ABCC_MRP_Like The MRP 98.0 6.5E-06 1.4E-10 82.3 4.8 42 441-482 16-59 (171)
258 PF01695 IstB_IS21: IstB-like 98.0 4.6E-06 1E-10 84.3 3.6 100 451-566 47-150 (178)
259 COG4559 ABC-type hemin transpo 98.0 1.2E-05 2.5E-10 82.1 6.2 53 433-485 7-61 (259)
260 COG1124 DppF ABC-type dipeptid 98.0 5.3E-06 1.1E-10 86.3 3.8 44 442-485 22-67 (252)
261 PRK13539 cytochrome c biogenes 98.0 9.4E-06 2E-10 83.7 5.6 46 437-482 12-59 (207)
262 cd03223 ABCD_peroxisomal_ALDP 98.0 1.1E-05 2.4E-10 80.3 6.0 42 441-482 15-58 (166)
263 COG1118 CysA ABC-type sulfate/ 98.0 8.6E-06 1.9E-10 87.2 5.4 54 431-484 6-61 (345)
264 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.0 9E-06 2E-10 85.0 5.4 56 428-483 23-80 (224)
265 cd03247 ABCC_cytochrome_bd The 97.9 7.2E-06 1.6E-10 82.5 4.5 42 441-482 16-59 (178)
266 cd03229 ABC_Class3 This class 97.9 6.4E-06 1.4E-10 82.9 4.0 43 440-482 13-57 (178)
267 PF01637 Arch_ATPase: Archaeal 97.9 1.6E-05 3.5E-10 81.9 6.9 160 452-623 21-228 (234)
268 cd03230 ABC_DR_subfamily_A Thi 97.9 1.1E-05 2.5E-10 80.7 5.5 42 441-482 14-57 (173)
269 KOG0478 DNA replication licens 97.9 0.0001 2.3E-09 85.7 13.8 163 418-597 429-622 (804)
270 PRK05917 DNA polymerase III su 97.9 2.7E-05 5.8E-10 84.3 8.6 118 449-588 17-154 (290)
271 PRK13765 ATP-dependent proteas 97.9 3.6E-05 7.9E-10 91.7 10.4 100 556-657 277-399 (637)
272 PRK12377 putative replication 97.9 1.3E-05 2.8E-10 85.1 6.0 100 452-566 102-206 (248)
273 cd03301 ABC_MalK_N The N-termi 97.9 3.5E-06 7.7E-11 87.0 1.6 46 437-482 10-57 (213)
274 COG2884 FtsE Predicted ATPase 97.9 1.5E-05 3.3E-10 80.0 5.8 56 430-485 4-62 (223)
275 PRK07952 DNA replication prote 97.9 7.8E-06 1.7E-10 86.6 4.0 69 452-522 100-174 (244)
276 cd03293 ABC_NrtD_SsuB_transpor 97.9 2.7E-06 5.9E-11 88.4 0.5 44 440-483 17-62 (220)
277 PRK06835 DNA replication prote 97.9 1.1E-05 2.3E-10 89.2 4.8 99 452-565 184-288 (329)
278 cd03238 ABC_UvrA The excision 97.9 1.7E-05 3.7E-10 80.0 5.9 33 441-473 9-43 (176)
279 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 4.9E-06 1.1E-10 87.5 2.1 46 437-482 11-58 (236)
280 PRK13536 nodulation factor exp 97.9 2.2E-06 4.7E-11 95.3 -0.8 56 428-483 42-99 (340)
281 PRK13537 nodulation ABC transp 97.9 4E-06 8.6E-11 91.9 1.2 53 431-483 11-65 (306)
282 COG1125 OpuBA ABC-type proline 97.9 7.2E-06 1.6E-10 85.6 2.9 54 429-482 3-58 (309)
283 cd01120 RecA-like_NTPases RecA 97.9 5.6E-05 1.2E-09 73.2 8.9 110 454-567 2-138 (165)
284 COG1484 DnaC DNA replication p 97.9 1.9E-05 4.2E-10 84.3 6.0 69 451-521 105-178 (254)
285 PRK09544 znuC high-affinity zi 97.8 4.7E-06 1E-10 88.8 1.1 46 437-482 14-61 (251)
286 PRK08939 primosomal protein Dn 97.8 2.3E-05 4.9E-10 85.9 6.2 69 451-521 156-228 (306)
287 cd03246 ABCC_Protease_Secretio 97.8 2.9E-05 6.4E-10 77.7 6.5 42 441-482 16-59 (173)
288 PRK06921 hypothetical protein; 97.8 1.9E-05 4.1E-10 84.9 5.4 68 451-521 117-188 (266)
289 TIGR01188 drrA daunorubicin re 97.8 1.3E-05 2.9E-10 87.5 4.3 46 438-483 4-51 (302)
290 cd03265 ABC_DrrA DrrA is the A 97.8 1.9E-05 4E-10 82.2 5.1 47 437-483 10-58 (220)
291 COG4555 NatA ABC-type Na+ tran 97.8 2.2E-05 4.9E-10 79.5 5.3 42 443-484 18-61 (245)
292 PF03215 Rad17: Rad17 cell cyc 97.8 0.00021 4.6E-09 83.5 14.1 29 454-482 48-76 (519)
293 PRK13538 cytochrome c biogenes 97.8 2E-05 4.4E-10 81.0 5.0 47 437-483 11-59 (204)
294 cd03267 ABC_NatA_like Similar 97.8 2.2E-05 4.7E-10 82.7 5.2 49 435-483 29-79 (236)
295 PRK11650 ugpC glycerol-3-phosp 97.8 6.3E-06 1.4E-10 92.2 1.1 44 440-483 17-62 (356)
296 PRK11361 acetoacetate metaboli 97.8 7.6E-05 1.6E-09 86.0 10.0 178 453-653 168-388 (457)
297 PRK11247 ssuB aliphatic sulfon 97.8 1.9E-05 4.1E-10 84.4 4.6 48 436-483 21-70 (257)
298 KOG0990 Replication factor C, 97.8 0.00019 4.1E-09 77.3 11.7 163 453-638 64-237 (360)
299 COG4586 ABC-type uncharacteriz 97.8 3.1E-05 6.8E-10 81.6 5.7 44 443-486 40-85 (325)
300 PF05729 NACHT: NACHT domain 97.8 0.00012 2.5E-09 71.5 9.4 139 454-603 3-165 (166)
301 COG1136 SalX ABC-type antimicr 97.8 2.5E-05 5.4E-10 81.4 4.8 42 441-482 19-62 (226)
302 COG0410 LivF ABC-type branched 97.8 2.6E-05 5.7E-10 80.6 4.9 125 430-560 6-160 (237)
303 cd03213 ABCG_EPDR ABCG transpo 97.8 3.4E-05 7.4E-10 78.8 5.5 42 441-482 23-68 (194)
304 cd03231 ABC_CcmA_heme_exporter 97.7 3.4E-05 7.4E-10 79.2 5.2 44 439-482 12-57 (201)
305 PF14532 Sigma54_activ_2: Sigm 97.7 2.5E-05 5.4E-10 75.3 3.8 83 453-564 23-108 (138)
306 PRK11432 fbpC ferric transport 97.7 2.7E-05 5.9E-10 86.9 4.5 47 437-483 16-64 (351)
307 TIGR03265 PhnT2 putative 2-ami 97.7 2.8E-05 6.1E-10 86.9 4.6 47 437-483 14-62 (353)
308 PRK13541 cytochrome c biogenes 97.7 1.9E-05 4.2E-10 80.6 3.0 41 441-482 15-57 (195)
309 KOG0482 DNA replication licens 97.7 0.00057 1.2E-08 77.2 14.6 226 418-661 342-641 (721)
310 COG4525 TauB ABC-type taurine 97.7 4.2E-05 9.2E-10 77.1 5.2 42 442-483 20-63 (259)
311 PRK11000 maltose/maltodextrin 97.7 2.7E-05 5.9E-10 87.6 4.2 47 437-483 13-61 (369)
312 TIGR01818 ntrC nitrogen regula 97.7 6.9E-05 1.5E-09 86.5 7.6 184 453-655 159-381 (463)
313 PRK11153 metN DL-methionine tr 97.7 1.3E-05 2.8E-10 89.4 1.3 44 440-483 18-63 (343)
314 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00044 9.5E-09 79.1 13.3 30 454-483 113-142 (634)
315 PRK10923 glnG nitrogen regulat 97.7 0.00018 4E-09 83.3 10.7 178 453-653 163-383 (469)
316 COG4987 CydC ABC-type transpor 97.7 4.3E-05 9.4E-10 87.1 5.3 78 409-486 317-399 (573)
317 PRK11607 potG putrescine trans 97.7 1.3E-05 2.9E-10 90.2 1.2 50 433-482 25-76 (377)
318 PRK09452 potA putrescine/sperm 97.7 3.1E-05 6.7E-10 87.2 4.1 43 440-482 27-71 (375)
319 TIGR03258 PhnT 2-aminoethylpho 97.7 4E-05 8.8E-10 85.9 4.8 47 437-483 15-65 (362)
320 PRK15115 response regulator Gl 97.6 0.00016 3.5E-09 83.1 9.5 179 453-654 159-380 (444)
321 PRK09536 btuD corrinoid ABC tr 97.6 1.6E-05 3.5E-10 90.1 1.3 50 433-482 9-60 (402)
322 TIGR01186 proV glycine betaine 97.6 3.9E-05 8.5E-10 86.0 4.1 46 437-482 3-50 (363)
323 COG2274 SunT ABC-type bacterio 97.6 8.7E-05 1.9E-09 89.6 7.3 132 429-567 473-641 (709)
324 COG3840 ThiQ ABC-type thiamine 97.6 5.5E-05 1.2E-09 75.6 4.6 40 445-484 17-58 (231)
325 cd03233 ABC_PDR_domain1 The pl 97.6 6.8E-05 1.5E-09 77.1 5.5 36 441-476 21-58 (202)
326 TIGR03522 GldA_ABC_ATP gliding 97.6 5.1E-05 1.1E-09 83.0 4.7 47 437-483 12-60 (301)
327 PRK13648 cbiO cobalt transport 97.6 5.9E-05 1.3E-09 81.1 4.9 41 442-482 24-66 (269)
328 PRK13546 teichoic acids export 97.6 6.7E-05 1.5E-09 80.6 5.3 43 440-482 37-81 (264)
329 TIGR03415 ABC_choXWV_ATP choli 97.6 6.1E-05 1.3E-09 85.0 5.1 53 431-483 28-82 (382)
330 PRK13632 cbiO cobalt transport 97.6 5.8E-05 1.3E-09 81.2 4.8 42 441-482 23-66 (271)
331 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00015 3.2E-09 81.3 8.1 143 447-615 58-207 (362)
332 cd03232 ABC_PDR_domain2 The pl 97.6 3.2E-05 7E-10 78.8 2.5 35 441-475 21-57 (192)
333 cd03283 ABC_MutS-like MutS-lik 97.6 0.00014 2.9E-09 74.9 7.1 32 444-475 18-49 (199)
334 cd03217 ABC_FeS_Assembly ABC-t 97.6 9.4E-05 2E-09 75.9 5.8 37 439-475 12-50 (200)
335 PRK07276 DNA polymerase III su 97.6 0.00042 9.1E-09 75.2 11.1 128 449-598 22-172 (290)
336 PRK13635 cbiO cobalt transport 97.6 5.9E-05 1.3E-09 81.6 4.4 42 441-482 21-64 (279)
337 COG1122 CbiO ABC-type cobalt t 97.6 3.2E-05 6.8E-10 81.6 2.2 43 441-483 18-62 (235)
338 TIGR02314 ABC_MetN D-methionin 97.6 5.6E-05 1.2E-09 84.2 4.3 42 441-482 19-62 (343)
339 COG4608 AppF ABC-type oligopep 97.6 9.3E-05 2E-09 78.5 5.7 111 442-565 28-169 (268)
340 PRK10365 transcriptional regul 97.6 0.00016 3.4E-09 83.0 7.8 183 452-654 163-385 (441)
341 TIGR02237 recomb_radB DNA repa 97.6 0.00022 4.7E-09 73.4 8.2 113 449-564 8-148 (209)
342 PRK05818 DNA polymerase III su 97.6 0.00022 4.9E-09 75.8 8.3 121 449-588 5-147 (261)
343 COG3267 ExeA Type II secretory 97.5 0.002 4.4E-08 67.8 15.1 183 454-652 54-267 (269)
344 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 2.4E-05 5.1E-10 81.1 0.1 45 440-484 17-63 (218)
345 PRK13647 cbiO cobalt transport 97.5 8.1E-05 1.8E-09 80.3 4.3 42 441-482 19-62 (274)
346 PRK13650 cbiO cobalt transport 97.5 7.6E-05 1.7E-09 80.7 4.1 41 442-482 22-64 (279)
347 KOG0058 Peptide exporter, ABC 97.5 0.00021 4.6E-09 84.3 7.8 55 428-482 466-525 (716)
348 COG4152 ABC-type uncharacteriz 97.5 6.8E-05 1.5E-09 78.1 3.3 57 430-486 5-63 (300)
349 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.00012 2.6E-09 77.8 5.3 31 454-484 28-58 (246)
350 cd03215 ABC_Carb_Monos_II This 97.5 9.1E-05 2E-09 74.8 3.9 41 442-482 15-57 (182)
351 cd03235 ABC_Metallic_Cations A 97.4 4.4E-05 9.6E-10 78.8 1.4 52 433-484 5-58 (213)
352 TIGR03608 L_ocin_972_ABC putat 97.4 4.4E-05 9.5E-10 78.3 1.1 48 437-484 8-57 (206)
353 PF12774 AAA_6: Hydrolytic ATP 97.4 0.0003 6.6E-09 74.1 7.4 67 452-525 33-99 (231)
354 COG4178 ABC-type uncharacteriz 97.4 0.0003 6.4E-09 82.6 8.0 36 440-475 406-443 (604)
355 COG5271 MDN1 AAA ATPase contai 97.4 0.00031 6.6E-09 87.5 8.2 131 452-601 1544-1703(4600)
356 TIGR02868 CydC thiol reductant 97.4 0.00022 4.8E-09 83.9 7.0 55 430-484 337-394 (529)
357 cd03226 ABC_cobalt_CbiO_domain 97.4 4.4E-05 9.6E-10 78.4 1.0 45 440-484 13-59 (205)
358 cd03259 ABC_Carb_Solutes_like 97.4 3.9E-05 8.4E-10 79.3 0.4 48 437-484 10-59 (213)
359 PRK11144 modC molybdate transp 97.4 0.00013 2.8E-09 81.6 4.6 39 445-483 16-56 (352)
360 cd03261 ABC_Org_Solvent_Resist 97.4 3.1E-05 6.6E-10 81.3 -0.4 48 437-484 10-59 (235)
361 KOG0057 Mitochondrial Fe/S clu 97.4 0.00049 1.1E-08 78.8 9.1 114 431-545 355-502 (591)
362 COG1117 PstB ABC-type phosphat 97.4 0.00026 5.6E-09 72.6 6.1 46 428-473 8-55 (253)
363 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00014 2.9E-09 78.3 4.4 55 430-484 27-83 (269)
364 PRK11176 lipid transporter ATP 97.4 0.00024 5.3E-09 84.5 6.9 45 440-484 356-402 (582)
365 cd03225 ABC_cobalt_CbiO_domain 97.4 4.6E-05 9.9E-10 78.6 0.6 45 440-484 14-60 (211)
366 PF12775 AAA_7: P-loop contain 97.4 0.0002 4.3E-09 77.3 5.4 135 452-603 34-195 (272)
367 PF00910 RNA_helicase: RNA hel 97.4 0.00015 3.3E-09 66.9 3.9 25 454-478 1-25 (107)
368 TIGR03797 NHPM_micro_ABC2 NHPM 97.4 0.00023 5E-09 86.5 6.5 54 430-483 454-511 (686)
369 cd03258 ABC_MetN_methionine_tr 97.4 6.2E-05 1.3E-09 78.9 1.3 44 441-484 19-64 (233)
370 PRK10247 putative ABC transpor 97.4 6.1E-05 1.3E-09 78.7 1.3 53 432-484 12-66 (225)
371 COG1618 Predicted nucleotide k 97.4 0.00036 7.7E-09 68.6 6.3 23 453-475 7-29 (179)
372 cd01121 Sms Sms (bacterial rad 97.4 0.00067 1.5E-08 76.4 9.5 71 454-524 85-172 (372)
373 PRK11174 cysteine/glutathione 97.4 0.00021 4.6E-09 85.2 5.9 47 438-485 361-409 (588)
374 TIGR02315 ABC_phnC phosphonate 97.4 6.9E-05 1.5E-09 79.0 1.5 46 439-484 14-61 (243)
375 PF00931 NB-ARC: NB-ARC domain 97.4 0.00038 8.2E-09 74.8 7.2 148 454-623 22-196 (287)
376 COG1485 Predicted ATPase [Gene 97.3 0.00042 9.1E-09 75.9 7.3 138 448-612 62-207 (367)
377 TIGR02858 spore_III_AA stage I 97.3 0.0003 6.5E-09 75.8 6.2 94 452-566 112-229 (270)
378 cd03224 ABC_TM1139_LivF_branch 97.3 4.4E-05 9.6E-10 79.2 -0.2 48 437-484 10-59 (222)
379 COG3638 ABC-type phosphate/pho 97.3 0.00015 3.2E-09 75.3 3.6 54 431-484 7-63 (258)
380 cd03219 ABC_Mj1267_LivG_branch 97.3 6.8E-05 1.5E-09 78.7 1.1 48 437-484 10-59 (236)
381 PRK07132 DNA polymerase III su 97.3 0.00055 1.2E-08 74.8 8.2 127 449-599 16-160 (299)
382 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00035 7.7E-09 85.2 7.4 55 430-484 480-538 (710)
383 cd03296 ABC_CysA_sulfate_impor 97.3 5.7E-05 1.2E-09 79.6 0.4 48 437-484 12-61 (239)
384 cd01130 VirB11-like_ATPase Typ 97.3 0.00016 3.4E-09 73.5 3.5 68 453-520 27-110 (186)
385 TIGR01166 cbiO cobalt transpor 97.3 0.00015 3.3E-09 73.5 3.5 45 440-484 5-51 (190)
386 cd03257 ABC_NikE_OppD_transpor 97.3 7.1E-05 1.5E-09 78.0 0.9 44 441-484 19-64 (228)
387 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.7E-09 67.2 3.4 30 454-483 2-31 (121)
388 TIGR02673 FtsE cell division A 97.3 7E-05 1.5E-09 77.4 0.7 45 440-484 15-61 (214)
389 PLN03210 Resistant to P. syrin 97.3 0.0018 3.9E-08 83.3 13.6 175 415-623 181-389 (1153)
390 cd01124 KaiC KaiC is a circadi 97.3 0.0013 2.8E-08 66.0 9.9 32 454-485 2-36 (187)
391 cd03269 ABC_putative_ATPase Th 97.3 0.00016 3.6E-09 74.5 3.4 48 437-484 10-59 (210)
392 PRK10895 lipopolysaccharide AB 97.3 7.7E-05 1.7E-09 78.6 1.0 49 436-484 12-62 (241)
393 cd03263 ABC_subfamily_A The AB 97.3 7.2E-05 1.6E-09 77.6 0.7 45 440-484 15-61 (220)
394 cd03218 ABC_YhbG The ABC trans 97.3 5.4E-05 1.2E-09 79.2 -0.3 48 437-484 10-59 (232)
395 PRK13543 cytochrome c biogenes 97.3 5.2E-05 1.1E-09 78.6 -0.5 55 431-485 15-71 (214)
396 PF00005 ABC_tran: ABC transpo 97.3 0.00013 2.7E-09 69.7 2.2 40 444-483 2-43 (137)
397 cd03256 ABC_PhnC_transporter A 97.3 7.7E-05 1.7E-09 78.4 0.8 44 440-483 14-59 (241)
398 cd03260 ABC_PstB_phosphate_tra 97.3 5.7E-05 1.2E-09 78.8 -0.3 48 437-484 10-64 (227)
399 KOG0062 ATPase component of AB 97.3 0.00043 9.3E-09 78.7 6.5 42 432-473 85-128 (582)
400 cd03262 ABC_HisP_GlnQ_permease 97.3 0.0002 4.3E-09 73.9 3.5 48 437-484 10-59 (213)
401 PRK13545 tagH teichoic acids e 97.3 0.00031 6.7E-09 81.7 5.4 43 441-483 38-82 (549)
402 PRK11264 putative amino-acid A 97.3 9.3E-05 2E-09 78.4 1.0 49 436-484 12-62 (250)
403 PRK13640 cbiO cobalt transport 97.2 0.00019 4.1E-09 77.8 3.4 38 441-478 21-60 (282)
404 TIGR03410 urea_trans_UrtE urea 97.2 0.0002 4.3E-09 74.9 3.4 49 437-485 10-60 (230)
405 PRK11823 DNA repair protein Ra 97.2 0.001 2.2E-08 76.7 9.5 72 454-525 83-171 (446)
406 PRK10789 putative multidrug tr 97.2 0.00027 5.8E-09 84.1 4.8 43 441-483 329-373 (569)
407 TIGR02323 CP_lyasePhnK phospho 97.2 9E-05 2E-09 78.7 0.6 49 437-485 13-63 (253)
408 TIGR02203 MsbA_lipidA lipid A 97.2 0.00051 1.1E-08 81.6 7.0 45 441-485 346-392 (571)
409 TIGR01069 mutS2 MutS2 family p 97.2 0.0068 1.5E-07 74.4 16.7 22 453-474 324-345 (771)
410 TIGR01978 sufC FeS assembly AT 97.2 7.9E-05 1.7E-09 78.5 0.0 49 436-484 9-61 (243)
411 cd01131 PilT Pilus retraction 97.2 0.00036 7.9E-09 71.6 4.9 66 454-519 4-83 (198)
412 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00079 1.7E-08 69.1 7.4 27 446-472 20-49 (200)
413 TIGR03375 type_I_sec_LssB type 97.2 0.00059 1.3E-08 83.1 7.5 54 431-484 467-524 (694)
414 PRK11300 livG leucine/isoleuci 97.2 5.3E-05 1.2E-09 80.5 -1.4 54 432-485 10-65 (255)
415 PRK11248 tauB taurine transpor 97.2 0.00023 4.9E-09 76.0 3.4 46 439-484 13-60 (255)
416 PRK08118 topology modulation p 97.2 0.00048 1E-08 68.9 5.4 32 453-484 3-34 (167)
417 PRK11831 putative ABC transpor 97.2 9.7E-05 2.1E-09 79.4 0.4 49 436-484 16-66 (269)
418 TIGR01288 nodI ATP-binding ABC 97.2 9.3E-05 2E-09 81.0 0.3 51 434-484 11-63 (303)
419 TIGR03411 urea_trans_UrtD urea 97.2 0.0001 2.2E-09 77.6 0.6 50 436-485 11-62 (242)
420 TIGR00960 3a0501s02 Type II (G 97.2 0.00025 5.3E-09 73.5 3.3 44 441-484 17-62 (216)
421 COG1373 Predicted ATPase (AAA+ 97.2 0.0081 1.8E-07 68.4 15.8 123 453-595 39-161 (398)
422 PRK11124 artP arginine transpo 97.2 0.00027 5.9E-09 74.5 3.6 48 437-484 12-61 (242)
423 cd03268 ABC_BcrA_bacitracin_re 97.2 0.00027 5.9E-09 72.7 3.5 48 437-484 10-59 (208)
424 TIGR03005 ectoine_ehuA ectoine 97.2 0.00011 2.3E-09 78.2 0.4 48 437-484 10-59 (252)
425 PRK10908 cell division protein 97.2 0.00011 2.5E-09 76.3 0.7 45 440-484 15-61 (222)
426 PRK10619 histidine/lysine/argi 97.2 7.6E-05 1.7E-09 79.5 -0.7 53 432-484 10-64 (257)
427 PRK11701 phnK phosphonate C-P 97.2 0.00011 2.4E-09 78.3 0.6 49 436-484 15-65 (258)
428 cd03243 ABC_MutS_homologs The 97.2 0.00049 1.1E-08 70.8 5.2 20 454-473 32-51 (202)
429 PRK13409 putative ATPase RIL; 97.2 0.00032 6.9E-09 83.7 4.3 41 443-483 355-397 (590)
430 PRK13540 cytochrome c biogenes 97.2 0.00029 6.4E-09 72.2 3.5 48 437-484 11-60 (200)
431 TIGR01193 bacteriocin_ABC ABC- 97.1 0.00071 1.5E-08 82.6 7.4 54 431-484 477-533 (708)
432 TIGR00958 3a01208 Conjugate Tr 97.1 0.00073 1.6E-08 82.6 7.4 54 430-483 481-539 (711)
433 cd03266 ABC_NatA_sodium_export 97.1 0.00029 6.4E-09 72.9 3.4 44 441-484 19-64 (218)
434 TIGR02012 tigrfam_recA protein 97.1 0.0016 3.6E-08 71.6 9.3 111 454-564 58-190 (321)
435 cd03264 ABC_drug_resistance_li 97.1 0.0003 6.5E-09 72.6 3.4 45 440-484 13-58 (211)
436 PRK14250 phosphate ABC transpo 97.1 0.00029 6.4E-09 74.4 3.4 46 439-484 15-62 (241)
437 COG1135 AbcC ABC-type metal io 97.1 0.0002 4.2E-09 77.1 2.0 42 441-482 20-63 (339)
438 TIGR02688 conserved hypothetic 97.1 0.0019 4E-08 73.1 9.8 62 452-522 210-272 (449)
439 PRK12726 flagellar biosynthesi 97.1 0.035 7.6E-07 62.4 19.7 34 453-486 208-244 (407)
440 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00029 6.4E-09 73.1 3.3 44 441-484 19-64 (221)
441 TIGR02788 VirB11 P-type DNA tr 97.1 0.00077 1.7E-08 74.1 6.7 69 452-520 145-228 (308)
442 cd03292 ABC_FtsE_transporter F 97.1 0.0003 6.6E-09 72.6 3.3 44 441-484 15-60 (214)
443 PRK07261 topology modulation p 97.1 0.00064 1.4E-08 68.2 5.5 31 454-484 3-33 (171)
444 PRK13547 hmuV hemin importer A 97.1 9.7E-05 2.1E-09 79.7 -0.5 42 437-478 11-54 (272)
445 TIGR01189 ccmA heme ABC export 97.1 0.00033 7.1E-09 71.6 3.5 47 438-484 11-59 (198)
446 PRK13638 cbiO cobalt transport 97.1 0.00032 6.9E-09 75.5 3.4 48 437-484 11-60 (271)
447 PRK09493 glnQ glutamine ABC tr 97.1 0.00034 7.5E-09 73.6 3.6 48 437-484 11-60 (240)
448 KOG2170 ATPase of the AAA+ sup 97.1 0.0072 1.6E-07 65.0 13.3 96 454-566 113-225 (344)
449 PRK11629 lolD lipoprotein tran 97.1 0.00034 7.3E-09 73.4 3.3 44 441-484 23-68 (233)
450 TIGR03873 F420-0_ABC_ATP propo 97.1 0.00011 2.4E-09 78.2 -0.4 48 437-484 11-60 (256)
451 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.00036 7.8E-09 73.7 3.4 45 440-484 14-60 (242)
452 TIGR01618 phage_P_loop phage n 97.1 0.0013 2.8E-08 68.7 7.5 72 451-524 12-95 (220)
453 PRK11614 livF leucine/isoleuci 97.1 0.00015 3.1E-09 76.3 0.3 48 437-484 15-64 (237)
454 PRK11231 fecE iron-dicitrate t 97.1 0.00014 3.1E-09 77.4 0.3 49 436-484 11-61 (255)
455 PRK13548 hmuV hemin importer A 97.1 0.00036 7.8E-09 74.6 3.3 48 437-484 12-61 (258)
456 PRK10584 putative ABC transpor 97.1 0.00037 8.1E-09 72.7 3.4 43 442-484 25-69 (228)
457 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.00054 1.2E-08 71.8 4.5 31 443-473 21-53 (222)
458 PRK10575 iron-hydroxamate tran 97.1 0.00015 3.3E-09 77.7 0.4 53 431-483 15-69 (265)
459 PRK13657 cyclic beta-1,2-gluca 97.1 0.0008 1.7E-08 80.3 6.5 52 431-482 338-392 (588)
460 PRK08533 flagellar accessory p 97.1 0.0017 3.8E-08 68.3 8.2 36 450-485 21-61 (230)
461 TIGR03740 galliderm_ABC gallid 97.1 0.00016 3.5E-09 75.3 0.5 48 437-484 10-59 (223)
462 TIGR02857 CydD thiol reductant 97.0 0.001 2.3E-08 78.3 7.2 43 441-483 336-380 (529)
463 PRK15177 Vi polysaccharide exp 97.0 0.00037 8E-09 72.4 3.0 41 442-482 2-44 (213)
464 COG0396 sufC Cysteine desulfur 97.0 0.0019 4.2E-08 67.0 8.1 39 437-475 13-54 (251)
465 PRK09361 radB DNA repair and r 97.0 0.0018 3.8E-08 67.6 8.0 110 454-564 26-160 (225)
466 PRK10636 putative ABC transpor 97.0 0.00015 3.2E-09 87.4 -0.0 52 433-484 7-60 (638)
467 PRK14267 phosphate ABC transpo 97.0 0.00017 3.8E-09 76.5 0.5 41 437-477 14-56 (253)
468 smart00534 MUTSac ATPase domai 97.0 0.00069 1.5E-08 68.8 4.8 19 454-472 2-20 (185)
469 cd03254 ABCC_Glucan_exporter_l 97.0 0.00041 9E-09 72.4 3.2 44 441-484 17-62 (229)
470 PRK14242 phosphate transporter 97.0 0.0002 4.3E-09 76.1 0.8 40 437-476 16-57 (253)
471 COG3854 SpoIIIAA ncharacterize 97.0 0.0023 5E-08 66.3 8.4 68 454-521 140-229 (308)
472 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.001 2.2E-08 69.3 6.0 22 452-473 30-51 (213)
473 PRK10253 iron-enterobactin tra 97.0 0.00045 9.7E-09 74.1 3.4 48 437-484 17-66 (265)
474 PRK14247 phosphate ABC transpo 97.0 0.00021 4.6E-09 75.7 0.9 40 437-476 13-54 (250)
475 PRK13409 putative ATPase RIL; 97.0 0.00051 1.1E-08 81.9 4.1 50 433-483 79-131 (590)
476 PRK10070 glycine betaine trans 97.0 0.00046 1E-08 78.4 3.5 55 429-483 30-86 (400)
477 cd03227 ABC_Class2 ABC-type Cl 97.0 0.00083 1.8E-08 66.6 4.9 22 453-474 23-44 (162)
478 TIGR00972 3a0107s01c2 phosphat 97.0 0.00051 1.1E-08 72.7 3.6 39 440-478 14-54 (247)
479 PRK11160 cysteine/glutathione 97.0 0.0017 3.7E-08 77.4 8.4 57 429-485 340-400 (574)
480 PRK11147 ABC transporter ATPas 97.0 0.00022 4.8E-09 85.9 0.8 53 432-484 8-62 (635)
481 cd03250 ABCC_MRP_domain1 Domai 97.0 0.00051 1.1E-08 70.5 3.3 44 441-484 19-64 (204)
482 TIGR01184 ntrCD nitrate transp 97.0 0.0005 1.1E-08 72.1 3.2 41 444-484 2-44 (230)
483 PRK14274 phosphate ABC transpo 97.0 0.00013 2.8E-09 77.8 -1.2 45 432-476 17-63 (259)
484 cd03300 ABC_PotA_N PotA is an 97.0 0.00058 1.3E-08 71.7 3.7 47 438-484 11-59 (232)
485 cd03245 ABCC_bacteriocin_expor 97.0 0.00049 1.1E-08 71.4 3.1 44 441-484 18-63 (220)
486 TIGR02204 MsbA_rel ABC transpo 97.0 0.0012 2.6E-08 78.6 6.8 43 441-483 354-398 (576)
487 PRK14262 phosphate ABC transpo 97.0 0.00023 5E-09 75.4 0.6 40 437-476 13-54 (250)
488 cd03251 ABCC_MsbA MsbA is an e 97.0 0.00053 1.2E-08 71.8 3.4 44 441-484 16-61 (234)
489 COG4988 CydD ABC-type transpor 97.0 0.00097 2.1E-08 77.3 5.7 56 430-485 323-381 (559)
490 TIGR02770 nickel_nikD nickel i 97.0 0.00054 1.2E-08 71.8 3.3 41 443-483 2-48 (230)
491 TIGR02769 nickel_nikE nickel i 96.9 0.00057 1.2E-08 73.2 3.6 44 441-484 25-70 (265)
492 COG1132 MdlB ABC-type multidru 96.9 0.0016 3.6E-08 77.3 7.8 56 429-484 330-388 (567)
493 PRK14238 phosphate transporter 96.9 0.00026 5.6E-09 76.2 0.9 41 436-476 33-75 (271)
494 cd03244 ABCC_MRP_domain2 Domai 96.9 0.00054 1.2E-08 71.1 3.2 44 441-484 18-63 (221)
495 PRK14235 phosphate transporter 96.9 0.00022 4.9E-09 76.5 0.4 42 436-477 28-71 (267)
496 COG2401 ABC-type ATPase fused 96.9 0.0025 5.3E-08 71.0 8.3 55 418-475 371-433 (593)
497 PRK15112 antimicrobial peptide 96.9 0.00057 1.2E-08 73.4 3.4 44 441-484 27-72 (267)
498 PRK14273 phosphate ABC transpo 96.9 0.00028 6E-09 75.1 1.0 45 433-477 13-59 (254)
499 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00057 1.2E-08 70.9 3.3 44 441-484 15-60 (218)
500 TIGR01846 type_I_sec_HlyB type 96.9 0.0013 2.9E-08 80.1 7.0 55 429-483 457-515 (694)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-73 Score=616.23 Aligned_cols=365 Identities=41% Similarity=0.597 Sum_probs=348.6
Q ss_pred cccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
.+...++.|+++.|+++.+.++++++.++.+|..|.++|-++|+||||+||||||||.|||++||+.++||++.++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
++|+|++..+++++|..|+..+||||||||||+++++|.. +.....+.++|+||.+||+|..+.+|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~---~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc---cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999988753 3344889999999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
||++|+||||||++|.+|.||...|.+||+.|+.+..+..++|+..+|+-|.||+|+||.|++|.|++.|...+...+|+
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccccc--cchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccC
Q 003669 649 DDLLQAAQIEERGMLDRKER--SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 726 (804)
Q Consensus 649 edi~~Al~~~~~g~~~~~~~--~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~ 726 (804)
.+++.|-+++..| ++++.. +++.+...||||.|||+|+.++..+.|++++||.|| |.++|++.++ | +.|.+.+
T Consensus 532 ~~LE~akDrIlMG-~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR-G~sLG~t~~L-P--e~D~~~~ 606 (752)
T KOG0734|consen 532 KHLEFAKDRILMG-PERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR-GPSLGHTSQL-P--EKDRYSI 606 (752)
T ss_pred HHHhhhhhheeec-ccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccC-Cccccceeec-C--ccchhhH
Confidence 9999999999999 777766 778889999999999999999999999999999999 9999999999 8 5688999
Q ss_pred CHHHHHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhhc
Q 003669 727 SRQSLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLCA 783 (804)
Q Consensus 727 tk~~ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~~ 783 (804)
||.+++.++.||||||+|||++||.+++||||++||.+||. +|++||+.|||.-.
T Consensus 607 Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~--lA~~MVt~fGMSd~ 661 (752)
T KOG0734|consen 607 TKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATK--LARRMVTKFGMSDK 661 (752)
T ss_pred HHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHH--HHHHHHHHcCcccc
Confidence 99999999999999999999999999999999999999985 99999999997654
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-65 Score=583.85 Aligned_cols=375 Identities=49% Similarity=0.743 Sum_probs=356.6
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~ 490 (804)
....+.|.++.|.++.+.++.+++.++.++..|..+|.++|+|++|+||||||||.|||++|++.++||+++++++|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCC
Q 003669 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (804)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ld 570 (804)
|+|.+..++|.+|.+++.++|||+||||||+.+..|+...+.|+.++..++|+||.+||++..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987777889999999999999999999889999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 003669 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (804)
Q Consensus 571 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ed 650 (804)
|+|+||||||+.|.++.||...|.+|++.|+++.++.+++|+..+|+.|+||+|+|+.+++|+|++.|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccccc--cchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccCCH
Q 003669 651 LLQAAQIEERGMLDRKER--SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 728 (804)
Q Consensus 651 i~~Al~~~~~g~~~~~~~--~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~tk 728 (804)
|.+|.+++..| +++++. ++.+++.+||||+|||++++++++.+++++|||+|| |.++||+++. | +++..++|+
T Consensus 383 i~ea~drv~~G-~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr-G~alG~t~~~-P--e~d~~l~sk 457 (596)
T COG0465 383 IEEAIDRVIAG-PERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR-GRALGYTLFL-P--EEDKYLMSK 457 (596)
T ss_pred hHHHHHHHhcC-cCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC-chhhcchhcC-C--ccccccccH
Confidence 99999999999 555554 889999999999999999999999999999999999 8999999999 7 457899999
Q ss_pred HHHHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhhc--------cccccccccee
Q 003669 729 QSLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLCA--------DSDVSLLGYVY 794 (804)
Q Consensus 729 ~~ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~~--------~~~~~~lg~~~ 794 (804)
.+++++|+++|||||||+++||. ++|||+++|+++||. +||.|++.+||... +++ .|||+..
T Consensus 458 ~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~--~ar~mVt~~Gms~~lG~v~~~~~~~-~flg~~~ 527 (596)
T COG0465 458 EELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATD--LARAMVTEYGMSAKLGPVAYEQVEG-VFLGRYQ 527 (596)
T ss_pred HHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHHHH--HHHHhhhhcCcchhhCceehhhccc-ccccccc
Confidence 99999999999999999999996 699999999999986 89999998888752 345 7898877
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-65 Score=590.91 Aligned_cols=364 Identities=50% Similarity=0.740 Sum_probs=341.5
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
+....+.|.|+.|+++++.++.+++.++.++..|.++|.++|+|+||+||||||||.|||++|++.++||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC-CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~-~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
+++|.+..+++.+|..++..+|||+||||||.++..++ .....++.+...++|+||.+||++....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999884 34457788889999999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It 647 (804)
||++|+||||||+.|+++.|+..+|.+|++.|++...+. +++|+..+|.+|+||+|+||.++|++|++.|.+++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCccccccc--cchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCcccccccc
Q 003669 648 TDDLLQAAQIEERGMLDRKER--SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 725 (804)
Q Consensus 648 ~edi~~Al~~~~~g~~~~~~~--~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~ 725 (804)
..|+..|++++..|+ ..... +.++++.+|+||+|||+++|++.+.+++.+|+|.| |+++||++|. | . +.++
T Consensus 543 ~~~~~~a~~Rvi~G~-~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP--GqalG~a~~~-P--~-~~~l 615 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGM-EKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP--GQALGYAQYL-P--T-DDYL 615 (774)
T ss_pred hhhHHHHHHHHhccc-cccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc--CCccceEEEC-C--c-cccc
Confidence 999999999999994 43333 88999999999999999999999999999999999 5599999999 5 2 3489
Q ss_pred CCHHHHHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhhc
Q 003669 726 LSRQSLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLCA 783 (804)
Q Consensus 726 ~tk~~ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~~ 783 (804)
+|+++|+++||++|||||||+++|| +++||||++|++++|. +|+.|+..+||.-.
T Consensus 616 ~sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~--~A~~~V~~~Gms~k 670 (774)
T KOG0731|consen 616 LSKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTK--IARAMVASFGMSEK 670 (774)
T ss_pred ccHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHH--HHHHHHHHcCcccc
Confidence 9999999999999999999999999 7899999999999985 99999998887654
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.8e-58 Score=540.74 Aligned_cols=364 Identities=45% Similarity=0.687 Sum_probs=336.8
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~ 491 (804)
...+.|+++.|+++.+.++.+++.++.++..|..+|...|+|++|+||||||||+|++++|++++.+++.++++++...+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCc
Q 003669 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldp 571 (804)
.|.....++.+|+.++...|||+||||||.++..++....+++.....+++.||..+|++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99888889999999999999999999999998877654455667778899999999999888889999999999999999
Q ss_pred cccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 003669 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 572 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi 651 (804)
+++||||||+.|.|++|+.++|.+||+.+++...+.+++++..++..|.||+++||.+++++|++.+.+++...||.+|+
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccccccccchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccCCHHHH
Q 003669 652 LQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 731 (804)
Q Consensus 652 ~~Al~~~~~g~~~~~~~~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~tk~~l 731 (804)
..|++++..|...+......+++.+|+||+||||+++++++.++|++|||.|| |+++||+++. | .++...+||.++
T Consensus 417 ~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~pr-g~~~G~~~~~-p--~~~~~~~t~~~l 492 (638)
T CHL00176 417 DTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPR-GQAKGLTWFT-P--EEDQSLVSRSQI 492 (638)
T ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeec-CCCCCceEec-C--CcccccccHHHH
Confidence 99999998884333333677899999999999999999999999999999999 8899999998 6 467788999999
Q ss_pred HHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhh
Q 003669 732 LDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMML 781 (804)
Q Consensus 732 l~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~ 781 (804)
+++|+++|||||||++|||++.+|+|+++||++||. +|++|++.+||-
T Consensus 493 ~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~--iA~~mv~~~Gm~ 540 (638)
T CHL00176 493 LARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTN--LARQMVTRFGMS 540 (638)
T ss_pred HHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHH--HHHHHHHHhCCC
Confidence 999999999999999999988899999999999986 888888888874
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.4e-56 Score=525.58 Aligned_cols=376 Identities=41% Similarity=0.648 Sum_probs=340.1
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~ 492 (804)
....|.++.|+...+..+.+++..+.++..+..++..+|+|++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45568889999999999999999888888888889999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCcc
Q 003669 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (804)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldpa 572 (804)
|.+...++.+|+.++...|||+||||+|.++..++....++......+++.||.+||++..+.+++||+|||+++.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999988776544455667778999999999999888899999999999999999
Q ss_pred ccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 003669 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 573 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (804)
++||||||+.|.|+.|+.++|.+||+.+++..++..++++..++..|.||||+||.++|++|+..|.+.++..|+.+|+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccccc--ccchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccCCHHH
Q 003669 653 QAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQS 730 (804)
Q Consensus 653 ~Al~~~~~g~~~~~~--~~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~tk~~ 730 (804)
.|++++..| ..+.. ....+++.+++||+||||+++++++..++++|+|.|| |+++||+++. | .++....||.+
T Consensus 387 ~a~~~v~~g-~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr-g~~~g~~~~~-~--~~~~~~~~~~~ 461 (644)
T PRK10733 387 KAKDKIMMG-AERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVTFFL-P--EGDAISASRQK 461 (644)
T ss_pred HHHHHHhcc-cccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc-CCCcceeEEC-C--CcccccccHHH
Confidence 999999887 33332 2677899999999999999999999999999999999 8899999998 6 44566789999
Q ss_pred HHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhh------c--ccccccccceee
Q 003669 731 LLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLC------A--DSDVSLLGYVYI 795 (804)
Q Consensus 731 ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~------~--~~~~~~lg~~~~ 795 (804)
++++|+++|||||||+++||.+.+||||++||++||. +|+.|++.+||.. + ..+..|||+...
T Consensus 462 l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~--lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~ 532 (644)
T PRK10733 462 LESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATN--LARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVA 532 (644)
T ss_pred HHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHH--HHHHHHHHhCCCccccchhhcccccccccccccc
Confidence 9999999999999999999988899999999999986 8888888777753 2 234457887644
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.8e-55 Score=504.72 Aligned_cols=365 Identities=48% Similarity=0.725 Sum_probs=333.2
Q ss_pred cccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
....+.+.|+++.|++..+..+.+++..+.++..+...|...|+|++|+||||||||+|++++|++++.+++.++++++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34457889999999999999999999999889899999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
+.+.|.....++.+|+.++...||||||||||.++..+.....++......+++.|+.+||++....+++||+|||+++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999999999999999999999999999999998876543334456667889999999999988889999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+||+++||||||+.|+++.|+.++|.+|++.++.......++++..++..|.||+++||.++|++|+..+.++++..|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999998887788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccccc--ccchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccC
Q 003669 649 DDLLQAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 726 (804)
Q Consensus 649 edi~~Al~~~~~g~~~~~~--~~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~ 726 (804)
+|+..|++++..+ ..... .++.+++.+++||+||||+++.+++..++++|||.|| |.++||+++. | .++....
T Consensus 286 ~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr-g~~~G~~~~~-~--~~~~~~~ 360 (495)
T TIGR01241 286 NDIEEAIDRVIAG-PEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR-GQALGYTQFL-P--EEDKYLY 360 (495)
T ss_pred HHHHHHHHHHhcc-cccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec-CCccceEEec-C--ccccccC
Confidence 9999999999887 33322 3678899999999999999999988899999999999 8899999988 5 3456788
Q ss_pred CHHHHHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhh
Q 003669 727 SRQSLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLC 782 (804)
Q Consensus 727 tk~~ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~ 782 (804)
|+.+++++|+++|||||||+++||. +|+|+++||++||. +|+.|+..+||-.
T Consensus 361 t~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~--lA~~mv~~~Gm~~ 412 (495)
T TIGR01241 361 TKSQLLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQATN--IARAMVTEWGMSD 412 (495)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHHHH--HHHHHHHHhCCCc
Confidence 9999999999999999999999996 99999999999986 8888888888654
No 7
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.3e-48 Score=472.81 Aligned_cols=295 Identities=19% Similarity=0.223 Sum_probs=250.5
Q ss_pred cccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh------------------------------
Q 003669 442 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY------------------------------ 491 (804)
Q Consensus 442 ~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~------------------------------ 491 (804)
...++|+++|+||||+||||||||+|||+||+++++|++.|+++++++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 33578899999999999999999999999999999999999999998643
Q ss_pred -----------hccc--hhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---CCC
Q 003669 492 -----------VGVG--ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---GRG 555 (804)
Q Consensus 492 -----------~g~~--~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---~~~ 555 (804)
++.+ ...++.+|+.|+.++||||||||||.++... ....+++.|+.+|++.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCC
Confidence 1112 2237889999999999999999999997641 12236899999999753 356
Q ss_pred ceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHH--ccCCCCC-hhcHHHHHhhCCCCcHHHHHHHHH
Q 003669 556 NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA--RKKPMAD-DVDYLAVASMTDGMVGAELANIVE 632 (804)
Q Consensus 556 ~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l--~~~~l~~-~~dl~~la~~t~G~sg~DL~~Lv~ 632 (804)
+|+||||||+|+.|||||+||||||+.|.++.|+..+|.+++..++ +...+.. .+|+..+|..|.||+||||.++|+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998654 3444443 368999999999999999999999
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEc--c---CCCC
Q 003669 633 VAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIA--P---RAGR 707 (804)
Q Consensus 633 ~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~--p---r~G~ 707 (804)
+|+..|+++++..|+.+++..|++++.+| ........ ..+.+++||+||||+++.+....++++|||. + +.|.
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g-~~~~~~~~-~~~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~ 1929 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWD-LRSQVRSV-QDHGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGD 1929 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhh-hhhcccCc-chhhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcc
Confidence 99999999999999999999999999998 33332333 3345799999999999999999999999994 3 2244
Q ss_pred ccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCC
Q 003669 708 ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEG 752 (804)
Q Consensus 708 alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~ 752 (804)
+.||+||..+ .+++++.+++.+|++||||||||++||+.+
T Consensus 1930 ~yl~~wyle~-----~~~mkk~tiL~~Il~cLAGraAedlwf~~~ 1969 (2281)
T CHL00206 1930 SYLYKWYFEL-----GTSMKKLTILLYLLSCSAGSVAQDLWSLPG 1969 (2281)
T ss_pred cceeEeecCC-----cccCCHHHHHHHHHHHhhhhhhhhhccCcc
Confidence 6699999832 278999999999999999999999999883
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-48 Score=408.06 Aligned_cols=253 Identities=46% Similarity=0.760 Sum_probs=245.7
Q ss_pred cccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~ 487 (804)
....+++++.+++|+++++.++++++.. +.++.+|..+|+.+|+|||||||||||||.|||++|+..+..|+++.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3456889999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC
Q 003669 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
+.+|+|.+..-++.+|+.|+.++||||||||||+++..|...+.||+.+.+.++-+||++||+|...+||-||++||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 003669 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It 647 (804)
.|||||+||||||+.|.||+|+.+.|.+||+.|.++..+.+++|++.+|..|.|+||+||.++|.+|...|.|..+..+|
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 003669 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
++||..|++++...
T Consensus 382 ~~DF~~Av~KV~~~ 395 (406)
T COG1222 382 MEDFLKAVEKVVKK 395 (406)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=383.55 Aligned_cols=248 Identities=42% Similarity=0.729 Sum_probs=234.5
Q ss_pred cCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
..+++.|++++|+++.+.++++.+.+ +.++..|.++|++.|+||||+||||||||++||++|.+.+.+|+++.+.++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 44789999999999999999999988 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
+|+|.++..++.+|++|+..+|||+||||||.++..|++ +++.-.+.++++||.+||++....+|+||++||+|+.|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g---~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG---SSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC---CccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 999999999999999999999999999999999999863 33366788999999999999999999999999999999
Q ss_pred CccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--CCCcC
Q 003669 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEIT 647 (804)
Q Consensus 570 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~--~~~It 647 (804)
|++|+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..+|..|.||||+||.++|++|+..|.++. ...|+
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~ 663 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEIT 663 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 46799
Q ss_pred HHHHHHHHHHHHcC
Q 003669 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||.+|+..+...
T Consensus 664 ~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 664 WQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999876544
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-41 Score=370.64 Aligned_cols=248 Identities=40% Similarity=0.670 Sum_probs=228.8
Q ss_pred cCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
.-+++.|++++++.++..++..++.+ +.++..|..+|+..|.||||+||||||||.|||++|++.+.+|++|.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34788999999999999999988877 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
+|+|..+..++++|+.|+..+|||||+||+|++.+.|+... .+....++|+||.+||++..+.+|.||++||+||.+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999886543 444456999999999999999999999999999999
Q ss_pred CccccCCCcccccccCCCCCHHHHHHHHHHHHc--cCCCCChhcHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHcC---
Q 003669 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLAVASMTD--GMVGAELANIVEVAAINMMRDG--- 642 (804)
Q Consensus 570 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~--~~~l~~~~dl~~la~~t~--G~sg~DL~~Lv~~A~~~A~~~~--- 642 (804)
||+++||||||..+++++|+.++|..||+.+.+ +.++.+++|++++|..+. ||||+||..||++|...|.++.
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 778899999999999877 9999999999999999988751
Q ss_pred -------------CCCcCHHHHHHHHHHHHcC
Q 003669 643 -------------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 -------------~~~It~edi~~Al~~~~~g 661 (804)
...+|..||.+|++++...
T Consensus 741 ~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 741 IDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred ccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1137788999999988655
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=312.87 Aligned_cols=252 Identities=38% Similarity=0.656 Sum_probs=240.1
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
+.-++-.++.++|+++.+.++++++.. ..++++|..+|+.-|+|++|+||||+|||.|++++|......|+++++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445667788899999999999999987 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|+|.+..-++.+|-.++.++|+|+|.||||++++.|...+.+|+.+...+.-.||+.+|+|....|+-||++||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999998877777788888999999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+||+|+||||+|+.|.||+|+.+.|.+|++.|-++.++...+++..+|....|.||+++..+|.+|...|.++.+..+|.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003669 649 DDLLQAAQIEERG 661 (804)
Q Consensus 649 edi~~Al~~~~~g 661 (804)
+||+-|+..+..-
T Consensus 379 edfemav~kvm~k 391 (404)
T KOG0728|consen 379 EDFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888653
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-37 Score=309.65 Aligned_cols=251 Identities=37% Similarity=0.629 Sum_probs=239.5
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
...+++.+.+++|++-.+.++++++.. +.+..+|+..|+.+|+|++++||||||||.|+|++|+.....|+++.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 345789999999999999999999987 6778899999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|.|.++.-++.+|..++.++|+|+||||||.+..++.....+.+.+...++-.||+.||+|....||-||++||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999998887778888888999999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+||+|+||||+|+.|.||.||..+++-+|.....+..+.+++|++.+..+.+..|++||..+|++|.+.|.+.++-.+..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 003669 649 DDLLQAAQIEER 660 (804)
Q Consensus 649 edi~~Al~~~~~ 660 (804)
.||+.|......
T Consensus 387 kd~e~ay~~~vk 398 (408)
T KOG0727|consen 387 KDFEKAYKTVVK 398 (408)
T ss_pred HHHHHHHHhhcC
Confidence 999999876643
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=342.70 Aligned_cols=227 Identities=42% Similarity=0.682 Sum_probs=213.9
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~ 491 (804)
..++.|.+++|+++...++.+++..+.+++.|..+|+.+|+||||+||||||||.||++||+++++||+.|+..+++..+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCC----CceEEEeecCCCC
Q 003669 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR----GNVITIASTNRPD 567 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~----~~viVIatTN~~~ 567 (804)
.|..+..++.+|+.|...+|||+||||||++.++|.. .+-+--+.++.+||..||++... ..|+||++||+||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 9999999999999999999999999999999998743 23444577899999999997654 5799999999999
Q ss_pred CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003669 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~ 641 (804)
.|||+|+|+||||+.|.+..|+..+|.+||+..++...+..++|+..+|..|+||.|+||..||.+|+..|+++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=309.70 Aligned_cols=252 Identities=38% Similarity=0.634 Sum_probs=240.8
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
+..+++.+.++.|+.+.+..+++++.. +-++++|-++|+.+|+|++++||||||||.+++++|+..+..|+++-+++++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 456788999999999999999999997 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|+|.+..-++.+|+.++....||+|+||||.+++.+...+..|+.+...++-.|+..+|+|..++|+-|+++||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999988877767777888888899999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
|||+|+||||+|+.+.|.+||.+.|..||+.|.+......++-++.+|..++..+|++|+.+|.+|...|++..+...|.
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ate 408 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATE 408 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003669 649 DDLLQAAQIEERG 661 (804)
Q Consensus 649 edi~~Al~~~~~g 661 (804)
.||..|++.+..|
T Consensus 409 kdfl~av~kvvkg 421 (435)
T KOG0729|consen 409 KDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999877
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=306.43 Aligned_cols=248 Identities=40% Similarity=0.669 Sum_probs=235.7
Q ss_pred CccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~ 490 (804)
.+.-.+++++|+++.+.++-+++.. +.++..|.++|+++|+|+|+|||||||||.++++.|...+..|..+.+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 3556789999999999888776665 778899999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCC
Q 003669 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (804)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ld 570 (804)
|+|.+...++..|.-++..+|+|+||||+|.++.+|.....+|+.+...++-.||+.+|+|.+...+-||++||+.+.||
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 003669 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (804)
Q Consensus 571 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ed 650 (804)
|+|+|+||+|+.|.||.|+.+.|.+|++.|.++....++++++++|+.|++|+|++...+|-+|...|.+++..+++.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003669 651 LLQAAQIEE 659 (804)
Q Consensus 651 i~~Al~~~~ 659 (804)
|.+++..+.
T Consensus 405 fmegI~eVq 413 (424)
T KOG0652|consen 405 FMEGILEVQ 413 (424)
T ss_pred HHHHHHHHH
Confidence 988876554
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-37 Score=314.08 Aligned_cols=252 Identities=38% Similarity=0.649 Sum_probs=236.9
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
+..+.-.+.++.|++..+.++++.+.. +.+++.|...|+++|+||+|||+||||||.|||++|+.....|.++-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 455677899999999999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|.|.+...++++|+.|..++|+|+||||||+++.+|-...+.|..+...++-.||+.+|+|..++.|-||++||..+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999887665545555667788899999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
|||+|+||||+|+.|.|+.||...+..||..|.....+..+++++.+...-..+||+||.++|.+|.+.|.+..+-.+++
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~ 416 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTM 416 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003669 649 DDLLQAAQIEERG 661 (804)
Q Consensus 649 edi~~Al~~~~~g 661 (804)
+||..|.+.+...
T Consensus 417 ~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 417 EDFKKAKEKVLYK 429 (440)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888653
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.9e-35 Score=325.81 Aligned_cols=252 Identities=37% Similarity=0.599 Sum_probs=232.5
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
...+++.|.+++|++..+.++++.+.. +.++..|..+|+..|+|++|+||||||||+|++++|++++.+++.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 346789999999999999999998875 6788899999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|+|.....++.+|..++...|+|+||||+|.++..+.....+.+......+..++..++++....+++||++||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999998899999999999999999999999998776443333445566788999999999888889999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+||+++||||||+.|+|+.|+.++|..||+.++.+..+..++++..++..|.||||+||.++|++|...|.++++..|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 003669 649 DDLLQAAQIEERG 661 (804)
Q Consensus 649 edi~~Al~~~~~g 661 (804)
+||..|+..+..+
T Consensus 377 ~df~~A~~~v~~~ 389 (398)
T PTZ00454 377 KDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-35 Score=332.64 Aligned_cols=248 Identities=37% Similarity=0.680 Sum_probs=221.7
Q ss_pred CccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~ 490 (804)
-+++.|+|++|+++++.++.+-+.. +.++.+| ..|++...||+||||||||||.+||++|.++...|.++.+.++.++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 3689999999999999988887776 5555554 4588888899999999999999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccC--CCceEEEeecCCCCC
Q 003669 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPDI 568 (804)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~--~~~viVIatTN~~~~ 568 (804)
|+|+.+.++|.+|++|+..+|||||+||+|++++.|+..++|||- +++++.+||.+||++.+ ...|+||++||+||.
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV-MDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV-MDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc-HHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999999887777764 56688999999999874 567999999999999
Q ss_pred CCccccCCCcccccccCCCCC-HHHHHHHHHHHHccCCCCChhcHHHHHhhCC-CCcHHHHHHHHHHHHHHHHHcC----
Q 003669 569 LDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKKPMADDVDYLAVASMTD-GMVGAELANIVEVAAINMMRDG---- 642 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd-~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~-G~sg~DL~~Lv~~A~~~A~~~~---- 642 (804)
|||+|+||||||+.+++.+++ .+.+..+|+...++..+++++|+.++|..++ .|||+|+-.+|-.|.+.|+++.
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997765 5668999999999999999999999999875 6999999999999999998751
Q ss_pred -------------CCCcCHHHHHHHHHHHHcC
Q 003669 643 -------------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 -------------~~~It~edi~~Al~~~~~g 661 (804)
...|+++||..++++....
T Consensus 904 e~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 904 ESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred hhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 1248999999998876543
No 19
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=329.09 Aligned_cols=465 Identities=21% Similarity=0.291 Sum_probs=325.0
Q ss_pred cccchhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccc-hhhhhcccccccccccccccCCCCC-
Q 003669 124 IAYTEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN-RKFWESWDELKIDSLCVNAYTPPLK- 201 (804)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 201 (804)
...+|||+++++++|.|++|+|+|++|.++|++ .|..+-++..+ ..|.+..+.+.- ++.+
T Consensus 63 p~~~dly~vGt~a~I~q~~~lpdg~~kvlveg~---------~R~~I~~~~~~~~~~~a~~~~i~~---------~~~~~ 124 (782)
T COG0466 63 PTEDDLYEVGTLAKILQILKLPDGTVKVLVEGL---------QRVRISKLSDEEEFFEAEIELLPD---------EPIDE 124 (782)
T ss_pred CChhhhhhcchheeeeeeeeCCCCcEEEEEEee---------eeEEEEeeccCCCceEEEEEecCC---------Ccccc
Confidence 344599999999999999999999999999999 99999999987 466666555543 2333
Q ss_pred CCCCCC----------ccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHH
Q 003669 202 KPEVPN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKE 271 (804)
Q Consensus 202 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k~el~~~~~~~~~le~e~~~l~~e 271 (804)
..++.+ .|+...+++|.+.+..+..++.+.+|+|++|+++.++.+++|++.+......+|+..+..++.|
T Consensus 125 ~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~e 204 (782)
T COG0466 125 EREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKE 204 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344443 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 272 EERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAERE 351 (804)
Q Consensus 272 ~~~~~~~~~r~~~l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~ 351 (804)
.+.+..+++...++++++++.|+|| -|+++.+.-++.+..-..- +.+.+.|.+.++. ...
T Consensus 205 i~~~~~ek~I~~kVk~~meK~QREy-yL~EQlKaIqkELG~~~d~---------~~e~~~~~~kie~----------~~~ 264 (782)
T COG0466 205 IDLLQLEKRIRKKVKEQMEKSQREY-YLREQLKAIQKELGEDDDD---------KDEVEELREKIEK----------LKL 264 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCccc---------hhHHHHHHHHHhh----------cCC
Confidence 9999998889999999999999999 6666666544433222211 1122222222220 000
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhhhhhHHHHH-----HHHhcCCCCcccccCc------cccccCc
Q 003669 352 ERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARV-----RRAYGKGLPQYLERGV------DVKFSDV 420 (804)
Q Consensus 352 ~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~v-----s~~tgipv~k~~~~~~------~~~f~~~ 420 (804)
-.+..+.+++|+.+++ .+.++.....+ .+.+..|+.+...... .+.-.++
T Consensus 265 p~evk~k~~~El~kL~-------------------~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dH 325 (782)
T COG0466 265 PKEAKEKAEKELKKLE-------------------TMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDH 325 (782)
T ss_pred CHHHHHHHHHHHHHHh-------------------cCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccc
Confidence 1111222333333322 12222222333 3334667666554332 3344789
Q ss_pred cCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh---------h
Q 003669 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------Y 491 (804)
Q Consensus 421 ~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~---------~ 491 (804)
.|+++++.++-+.... ..+.......+ +||+||||+|||+|+++||..++..|++++.+...+. |
T Consensus 326 YGLekVKeRIlEyLAV---~~l~~~~kGpI---LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 326 YGLEKVKERILEYLAV---QKLTKKLKGPI---LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cCchhHHHHHHHHHHH---HHHhccCCCcE---EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccc
Confidence 9999999666655443 22222222222 8999999999999999999999999999999987654 9
Q ss_pred hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCC-----cchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG-----GQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sg-----ge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
+|..++++-+-+..+...+| +++|||||+++.+..+...|. +.+++..|...+.+++ .+-++|+||+|+|..
T Consensus 400 IGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~--yDLS~VmFiaTANsl 476 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP--YDLSKVMFIATANSL 476 (782)
T ss_pred cccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc--cchhheEEEeecCcc
Confidence 99999999888899999999 899999999987754332211 1222222222222222 345789999999999
Q ss_pred CCCCccccCCCcccccccCCCCCHHHHHHHHHHHHcc-----CCCCCh------hcHHHHHh-hC--CCCc--HHHHHHH
Q 003669 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-----KPMADD------VDYLAVAS-MT--DGMV--GAELANI 630 (804)
Q Consensus 567 ~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~-----~~l~~~------~dl~~la~-~t--~G~s--g~DL~~L 630 (804)
+.||.+|+. |+. +|.+.-++..+..+|.+.|+-. .++..+ .-+..+.+ +| .|.- -+.|..+
T Consensus 477 ~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 477 DTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred ccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHH
Confidence 999999999 997 9999999999999999988733 233211 11222222 22 2221 2667777
Q ss_pred HHHHHHHHHHcCCC---CcCHHHHHHHHHH
Q 003669 631 VEVAAINMMRDGRT---EITTDDLLQAAQI 657 (804)
Q Consensus 631 v~~A~~~A~~~~~~---~It~edi~~Al~~ 657 (804)
|+.++..-...... .|+..++..-+..
T Consensus 554 ~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 554 CRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 77776655543332 4666666655543
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=306.05 Aligned_cols=248 Identities=35% Similarity=0.559 Sum_probs=221.1
Q ss_pred cccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~ 487 (804)
..+.+++.|+++.|+.+++.-+++++.. +-.+..|+. ..++.+|+|++||||||||.|||++|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 4556789999999999999999998876 444555543 44566899999999999999999999999999999999999
Q ss_pred hhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCC-Cc---eEEEeec
Q 003669 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR-GN---VITIAST 563 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~-~~---viVIatT 563 (804)
.++|-|..++.++-+|+.|+..+|++|||||||.++..|+. .+.++..+.+-+.||.+||+..+. .+ |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999998874 366788889999999999997643 23 8888999
Q ss_pred CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-
Q 003669 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG- 642 (804)
Q Consensus 564 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~- 642 (804)
|.|+.||.+|+| ||...|++|+|+.+.|..+++..++...+.++++++.++..+.||||+||.++|++|.+++.++-
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999998851
Q ss_pred ----------------CCCcCHHHHHHHHHHHHcC
Q 003669 643 ----------------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 ----------------~~~It~edi~~Al~~~~~g 661 (804)
...++..||+.|+.++...
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 1248888899888877544
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-33 Score=317.17 Aligned_cols=251 Identities=46% Similarity=0.737 Sum_probs=232.0
Q ss_pred cCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
..+.+.|+++.|+++.+..+.+.+.. +.++..|..+|+..|+|++|+||||||||++++++|.+++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 44678899999999999999998876 67788899999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
.|+|.....++.+|+.++...|+||||||+|.++..+.....++.......+..++..++++....++.||+|||.++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999888899999999999999999999999988776555555566677888999999988878899999999999999
Q ss_pred CccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 570 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
|++++||||||+.|+|++|+.++|.+||+.+++...+..++++..++..|.||+|+||..+|++|+..|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 003669 650 DLLQAAQIEERG 661 (804)
Q Consensus 650 di~~Al~~~~~g 661 (804)
||.+|+..+..+
T Consensus 364 d~~~A~~~~~~~ 375 (389)
T PRK03992 364 DFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHHhcc
Confidence 999999998765
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=317.57 Aligned_cols=251 Identities=39% Similarity=0.665 Sum_probs=230.8
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
...+...|.++.|+++.+..+.+++.. +.++..|..+|+..|.|++|+||||||||++++++|++++.+++.+..+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345678999999999999999999875 6778899999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
..|.|.....++.+|..+....|+|+||||||.++..+.....++......++..++..+|++....++.||++||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999998889999999999999999999999998776544444555566778889999999887889999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..++..+.|+||+||.++|++|+..|.++++..|+.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 003669 649 DDLLQAAQIEER 660 (804)
Q Consensus 649 edi~~Al~~~~~ 660 (804)
+||..|+.++..
T Consensus 415 ~D~~~A~~~v~~ 426 (438)
T PTZ00361 415 ADFRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.3e-34 Score=288.91 Aligned_cols=240 Identities=35% Similarity=0.587 Sum_probs=220.0
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~ 492 (804)
.++.|+++.|.+..+..++-+..++.++..|..+ .|++|||+||||||||.+||+||+++..|++.+...+++..|+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 5788999999999999999999999999887665 4778999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCcc
Q 003669 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (804)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldpa 572 (804)
|.+...++.+|+.|+..+|||+||||+|+++-+|....-.|+ ...++|.||.+||++..+.+|+.|++||.|+.|||+
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGD--VsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGD--VSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc--HHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 999999999999999999999999999999877643222222 234789999999999999999999999999999999
Q ss_pred ccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHcCCCCcCHHHH
Q 003669 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA-NIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 573 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~-~Lv~~A~~~A~~~~~~~It~edi 651 (804)
+++ ||...|.|.+|+.++|..|++.+++..++.-+.++..++..|.|+||+||. .++..|...|+.+++..|+.+|+
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 988 999999999999999999999999999999999999999999999999996 67788899999999999999999
Q ss_pred HHHHHHHH
Q 003669 652 LQAAQIEE 659 (804)
Q Consensus 652 ~~Al~~~~ 659 (804)
..|+....
T Consensus 349 e~al~k~r 356 (368)
T COG1223 349 EKALKKER 356 (368)
T ss_pred HHHHHhhc
Confidence 99998743
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=310.33 Aligned_cols=226 Identities=36% Similarity=0.657 Sum_probs=211.9
Q ss_pred ccccccCccCchhHHHHHHHHHHhc-cccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l-~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~ 491 (804)
..+.|.+++|+.+++.-+++++.+. ..+.+|.+..++.+.||||+||||||||+|+.++|...+..|+++.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 4589999999999999999999984 567899999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCc
Q 003669 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldp 571 (804)
+|..+.++|.+|..|+...|||+|+||+|.++++|+..+.+ -..++.|+||.+|||..+-.+|.|+++|.+|+.|||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC---chHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 99999999999999999999999999999999998754322 345689999999999999999999999999999999
Q ss_pred cccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003669 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (804)
Q Consensus 572 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~ 641 (804)
+|+||||+|+.++-+.|+..+|.+|++.......+..++|++-+|..|+||||+||..++..|.+.|.++
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887654
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.8e-32 Score=299.58 Aligned_cols=248 Identities=48% Similarity=0.774 Sum_probs=227.2
Q ss_pred cCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
..+.+.|+++.|+++.+..+.+.+.. +.++..+..+|+..|+|++|+||||||||++++++|+.++.+++.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45778899999999999999998875 56778889999999999999999999999999999999999999999999988
Q ss_pred hhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
.|+|.....++.+|+.++...|+|+||||+|.++..+.....+++......+..++..++++...+++.||+|||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 89998888889999999999999999999999987765544455666677888999999988777899999999999999
Q ss_pred CccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 570 dpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
|+++++|||||+.|+|+.|+.++|.+||+.++....+..++++..++..|.||+|+||.++|++|+..|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003669 650 DLLQAAQIE 658 (804)
Q Consensus 650 di~~Al~~~ 658 (804)
||..|+..+
T Consensus 355 d~~~a~~~~ 363 (364)
T TIGR01242 355 DFIKAVEKV 363 (364)
T ss_pred HHHHHHHHh
Confidence 999998765
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=6.3e-32 Score=308.58 Aligned_cols=242 Identities=27% Similarity=0.407 Sum_probs=210.6
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~ 492 (804)
....|++++|++..+..+.+....+. ....+.|+..|+|+||+||||||||++|+++|++++.+++.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 46679999999999988887655543 2345678999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCcc
Q 003669 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (804)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldpa 572 (804)
|..+..++.+|+.++...|||+||||||.+...+.... .+.....+++.|+..|++ ...+++||+|||+++.|||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999876533222 223456688889988884 45689999999999999999
Q ss_pred ccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC--ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 003669 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (804)
Q Consensus 573 LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~--~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ed 650 (804)
++|+||||+.|+++.|+.++|.+||+.++.+.... .+.++..++..|.||||+||.++|++|...|..+++ .++.+|
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~d 455 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDD 455 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 99999999999999999999999999999876432 478899999999999999999999999999987765 699999
Q ss_pred HHHHHHHHHcC
Q 003669 651 LLQAAQIEERG 661 (804)
Q Consensus 651 i~~Al~~~~~g 661 (804)
+..|+..+...
T Consensus 456 l~~a~~~~~Pl 466 (489)
T CHL00195 456 ILLALKQFIPL 466 (489)
T ss_pred HHHHHHhcCCC
Confidence 99999877643
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=8e-32 Score=325.01 Aligned_cols=248 Identities=41% Similarity=0.748 Sum_probs=225.3
Q ss_pred CccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~ 490 (804)
.+.+.|.++.|++.++..+.+.+.. +..+..+..+|+..|+|+||+||||||||++++++|++++.+++.++++++...
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 3567899999999999999998886 677888999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCC
Q 003669 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (804)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ld 570 (804)
|+|+.+..++.+|+.++...|||+||||+|.+++.++.. ..+...+.++++|+..||++....+++||+|||+++.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 999999999999999999999999999999998876532 223345678999999999988888999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 003669 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------- 642 (804)
Q Consensus 571 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~-------- 642 (804)
|+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..|.||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999899999999999999999999999999999887741
Q ss_pred ----------CCCcCHHHHHHHHHHHHcC
Q 003669 643 ----------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 ----------~~~It~edi~~Al~~~~~g 661 (804)
...|+.+||..|+..+...
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1269999999999876543
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=310.83 Aligned_cols=247 Identities=44% Similarity=0.739 Sum_probs=225.8
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
...+...|.++.|+...+..+.+++.. +..+..+...++..+.|+||+||||||||+|++++|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 345678899999999999999999987 5567778888999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
+.|+|..+..++.+|..|+...|||+||||+|++.+.++.... .....++++++.+|++.....+|+||++||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 9999999999999999999999999999999999988754322 2225699999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCC--CCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-CCC
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTE 645 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~--l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~-~~~ 645 (804)
+|++++||||||+.|+|++||.++|.+||+.++.... +..++++..++..|.||+|+||..+|++|...+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999544 4678999999999999999999999999999999988 788
Q ss_pred cCHHHHHHHHHHHH
Q 003669 646 ITTDDLLQAAQIEE 659 (804)
Q Consensus 646 It~edi~~Al~~~~ 659 (804)
+|.+||..|+..+.
T Consensus 471 ~~~~~~~~a~~~~~ 484 (494)
T COG0464 471 VTLDDFLDALKKIK 484 (494)
T ss_pred ccHHHHHHHHHhcC
Confidence 99999999998743
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-32 Score=281.68 Aligned_cols=250 Identities=39% Similarity=0.665 Sum_probs=234.8
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~ 488 (804)
+...++.|+.+.|+....-++.+.+.. +.++.++.++|+++|.|++||||||+|||.+++++|..++..++.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 444578999999999999999888776 7789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
+.|.|+....+++.|..|+.+.||++|+||||+.++.+.....+.+.....++..|+..|+++.....|-+|+|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999988665668888889999999999999999999999999999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
|||+|+||||+|+.|++|.|+...|..|++.|.........+|.+++...++||.|+|+++.|++|...|.+..+..+-.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~ 363 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLH 363 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003669 649 DDLLQAAQIEE 659 (804)
Q Consensus 649 edi~~Al~~~~ 659 (804)
+|+..++..+.
T Consensus 364 Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 364 EDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHH
Confidence 99988887664
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-31 Score=271.62 Aligned_cols=227 Identities=34% Similarity=0.591 Sum_probs=199.7
Q ss_pred cccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~ 487 (804)
....+++.|+++.|++..+..+++++.. +.-+.+|.. +-.+.+||||+||||||||+|||++|.+.+..|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4456899999999999999999988775 344444432 33445789999999999999999999999999999999999
Q ss_pred hhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-CCCceEEEeecCCC
Q 003669 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 566 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-~~~~viVIatTN~~ 566 (804)
++.|.|..+..++.+|+.++.+.|+||||||||.+++.++. ..++..+.+-..||.+|.+.. ++.+|+|+++||.|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999887643 345666788899999999864 45689999999999
Q ss_pred CCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003669 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (804)
Q Consensus 567 ~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~ 641 (804)
+.||.+++| ||++.|++|+|+...|..+|+.|+...+.. .+.|+.+|+..|.||||+||.-+++.|....+|.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887554 5678999999999999999999999998777654
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=278.20 Aligned_cols=228 Identities=35% Similarity=0.614 Sum_probs=208.4
Q ss_pred cccCccccccCccCchhHHHHHHHHHHh-ccccccccccCc-ccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccch
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGV-RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl-~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~ 486 (804)
...+..+.|.++.|++.++..+.+.+.. +..+..|...++ +.+.||||+||||||||.||+++|.+.+..|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3456789999999999999999988876 667777754444 46689999999999999999999999999999999999
Q ss_pred hhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCc--eEEEeecC
Q 003669 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTN 564 (804)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~--viVIatTN 564 (804)
+.+.++|...+.++.+|..+....|||+||||+|.+++.|. .+.++....+-++|+...|++..+.+ |+|+++||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999998872 46677788888999999999987765 99999999
Q ss_pred CCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003669 565 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (804)
Q Consensus 565 ~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~ 641 (804)
+|..+|.+++| |+.+.++++.|+..+|.+|++..++...+.+++|+..+|..|.||||.||.++|+.|+...+++
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999877653
No 32
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=304.04 Aligned_cols=295 Identities=23% Similarity=0.274 Sum_probs=243.4
Q ss_pred CCCccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQK 284 (804)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k~el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~~ 284 (804)
+++..|....++|++|++.+..||+|.+|+|++||+..++...-++++++.+++.+++.|..++++|.+...
T Consensus 357 i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~-------- 428 (786)
T COG0542 357 ITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKE-------- 428 (786)
T ss_pred ecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHH--------
Confidence 344788899999999999999999999999999999999876556788888888888888888888877111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003669 285 YEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELE 364 (804)
Q Consensus 285 l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~ 364 (804)
+...+.+..+ +...++.++++++
T Consensus 429 ----------------------k~~~~~~~~~-----------------------------------~~~~~~~~~~~~~ 451 (786)
T COG0542 429 ----------------------KKLIDEIIKL-----------------------------------KEGRIPELEKELE 451 (786)
T ss_pred ----------------------HHHHHHHHHH-----------------------------------hhhhhhhHHHHHh
Confidence 1111111111 0023333333332
Q ss_pred hccccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhcccccccc
Q 003669 365 GLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYR 444 (804)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~ 444 (804)
. + ++.+.+++++++|||||+.++.+.+.....+....+.+.+.++++++..+.+..+..
T Consensus 452 ~-~--------------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra 510 (786)
T COG0542 452 A-E--------------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA 510 (786)
T ss_pred h-c--------------------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH
Confidence 1 0 888899999999999999999999999999888899999999999999999999999
Q ss_pred ccCcccCC----cEEEECCCCCChhHHHHHHhhhhc---cceeeeccchhhhh------------hhccchhhHHHHHHH
Q 003669 445 RRGVRIPG----GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI------------YVGVGASRVRSLYQE 505 (804)
Q Consensus 445 ~~gl~i~~----gvLL~Gp~GtGKTtLakaLA~el~---~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~~ 505 (804)
+.|+..|. +++|.||+|+|||.|+|+||..+. ..+++++||+|++. |+|+.++.. +.+.
T Consensus 511 RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~--LTEa 588 (786)
T COG0542 511 RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQ--LTEA 588 (786)
T ss_pred hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccc--hhHh
Confidence 99998873 399999999999999999999885 78999999999986 888887754 9999
Q ss_pred HHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCC---------
Q 003669 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD--------- 567 (804)
Q Consensus 506 a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~--------- 567 (804)
+++.++||++||||++.+++ +++.||+.||.- .+..|++||+|||.-.
T Consensus 589 VRr~PySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~ 654 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG 654 (786)
T ss_pred hhcCCCeEEEechhhhcCHH--------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc
Confidence 99999999999999999998 999999999862 2456899999998431
Q ss_pred -------------------CCCccccCCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003669 568 -------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 568 -------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
.+.|+|++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 655 ~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 655 DDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 34678888 99999999999999999999887753
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=7e-29 Score=283.35 Aligned_cols=266 Identities=35% Similarity=0.597 Sum_probs=212.0
Q ss_pred cccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc---------
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN--------- 478 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~--------- 478 (804)
.+..+++.|+++.|++..+..+.+.+.. +.++..|...|+..|+|++|+||||||||++++++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3455788999999999999999988775 678889999999999999999999999999999999988543
Q ss_pred -eeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccC
Q 003669 479 -FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG 553 (804)
Q Consensus 479 -~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~ 553 (804)
|+.+..+++...|+|.....++.+|+.++.. .|+|+||||+|.++..++... .++..+.+++.|+..||++..
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhccccc
Confidence 5567777888889999998999999988764 699999999999987764322 122335678999999999988
Q ss_pred CCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC-CCCC---------hhcHHHHHh------
Q 003669 554 RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMAD---------DVDYLAVAS------ 617 (804)
Q Consensus 554 ~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-~l~~---------~~dl~~la~------ 617 (804)
.++++||+|||+++.|||+++||||||..|+|++|+.++|.+||+.++... ++.. ..+...++.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHL 410 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999998753 3311 112222211
Q ss_pred -----------------------hCCCCcHHHHHHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHHcCccccccc-c
Q 003669 618 -----------------------MTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGMLDRKER-S 669 (804)
Q Consensus 618 -----------------------~t~G~sg~DL~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~~g~~~~~~~-~ 669 (804)
.++.+||++|.++|..|...|+.+ +...|+.+|+..|+........+-... .
T Consensus 411 ~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~ 490 (512)
T TIGR03689 411 YATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTN 490 (512)
T ss_pred hhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCC
Confidence 256688999999999998888765 445799999999998887652222222 4
Q ss_pred chhhhhH
Q 003669 670 SETWRQV 676 (804)
Q Consensus 670 ~~e~~~v 676 (804)
+++|.++
T Consensus 491 ~~~w~~~ 497 (512)
T TIGR03689 491 PDDWARI 497 (512)
T ss_pred HHHHhhh
Confidence 4555444
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-28 Score=274.77 Aligned_cols=287 Identities=34% Similarity=0.518 Sum_probs=245.1
Q ss_pred ccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~ 491 (804)
..+. .++.|+......+++++.. +.++..+...|.++|+|+|++||||+|||.+++++|++.+..++.+++.+++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3444 6778888888888888776 6788889999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhcC-CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCC
Q 003669 492 VGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~-p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ld 570 (804)
.|+.+..++..|+.+.... |+++||||+|.+++++.... + ..+.+..+++..+|+....++++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~---~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD---D-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc---h-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 99999999999998765322 1 34568899999999988889999999999999999
Q ss_pred ccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 003669 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (804)
Q Consensus 571 paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ed 650 (804)
++++| ||||+.+.+..|+..+|.+|++.+.+..+..+++++..+|..|+||+|+||..+|++|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999887 8889
Q ss_pred HHHHHHHHHcCccccccccchhhhhHHHHHHH---------HHHHHhhCCCCCCcceEEEccCCCCccceEeeccC
Q 003669 651 LLQAAQIEERGMLDRKERSSETWRQVAINEAA---------MAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD 717 (804)
Q Consensus 651 i~~Al~~~~~g~~~~~~~~~~e~~~va~hEaG---------hAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p 717 (804)
+..|+..+... ..+ ....+...|.|.++| .-.|.|-+.++....+..|.|. .|.-.|.+|
T Consensus 409 ~~~A~~~i~ps-a~R--e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~pp----kGVLlyGPP 477 (693)
T KOG0730|consen 409 FQEALMGIRPS-ALR--EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPP----KGVLLYGPP 477 (693)
T ss_pred HHHHHhcCCch-hhh--heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCC----ceEEEECCC
Confidence 99998776543 111 122444555555555 2235677778888888888776 366666644
No 35
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=1.2e-27 Score=291.19 Aligned_cols=360 Identities=19% Similarity=0.248 Sum_probs=270.5
Q ss_pred ccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEE-LEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (804)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k~e-l~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~~l~ 286 (804)
..+...-.++++|++.+..||+|.+|+|++++...++...+++ |+.+.+.+..|+.+++.++.|.+..... |+++++
T Consensus 368 ~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~--~~~~l~ 445 (857)
T PRK10865 368 PAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKK--RLDMLN 445 (857)
T ss_pred HHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 4455556789999999999999999999999999998777665 7889999999999999998877655544 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003669 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (804)
Q Consensus 287 ~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~ 366 (804)
++++++++++..++.+|+.+++.+..+..+ +..++.+....+++++..+.....+.++..++++++++...
T Consensus 446 ~~l~~lq~e~~~L~eq~k~~k~el~~~~~~---------~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (857)
T PRK10865 446 EELSDKERQYSELEEEWKAEKASLSGTQTI---------KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAA 516 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999999888877777 77778888888877777777777778888888888877654
Q ss_pred cccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhcccccccccc
Q 003669 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (804)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~ 446 (804)
+... ..........++..++++++++|||||+.++..++..........+.+.+.++..++..+.........
T Consensus 517 ~~~~-------~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~ 589 (857)
T PRK10865 517 TQLE-------GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA 589 (857)
T ss_pred Hhhh-------ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh
Confidence 3211 011223445688999999999999999999888765544333333333444444444444333333334
Q ss_pred CcccC----CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh------------hhccchhhHHHHHHHHH
Q 003669 447 GVRIP----GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAK 507 (804)
Q Consensus 447 gl~i~----~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~~a~ 507 (804)
|+..| +.++|+||+|||||++|++|+..+ +.+++.++|+++.+. |+|.... ..+.+..+
T Consensus 590 gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~ 667 (857)
T PRK10865 590 GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVR 667 (857)
T ss_pred cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHH
Confidence 44433 248999999999999999999876 457899999987643 2222222 23555566
Q ss_pred hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCC------------
Q 003669 508 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP------------ 566 (804)
Q Consensus 508 ~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~------------ 566 (804)
..++++++|||++++.+. +++.|++.++.. .+..+.+||+|||..
T Consensus 668 ~~p~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~ 733 (857)
T PRK10865 668 RRPYSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD 733 (857)
T ss_pred hCCCCeEEEeehhhCCHH--------------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccc
Confidence 667799999999998765 778888887642 124567899999973
Q ss_pred -------------CCCCccccCCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003669 567 -------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 567 -------------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
..+.|+|++ |+|.++.|.+++.+...+|++..+..
T Consensus 734 ~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 734 YAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred hHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 135678887 99999999999999999999877754
No 36
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=1.6e-26 Score=279.87 Aligned_cols=405 Identities=22% Similarity=0.296 Sum_probs=275.4
Q ss_pred chhhcccccccceeecccCC---ccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCC
Q 003669 127 TEIFSLKDEGKLKHVIKSPS---GSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKK 202 (804)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (804)
.++++++++++|.++.+.|+ |.+++.++|+ -|..+-++....-|| +.-+.+.- . .++.+.
T Consensus 56 ~~ly~VGt~a~I~~~~~~~d~~dG~~~Ilv~G~---------~R~rI~~~~~~~p~~~A~V~~l~~--~-----~~~~~~ 119 (775)
T TIGR00763 56 DDIYSVGVVAQILEMLPLPSSGTATYKVVVEGL---------RRIRIKELSDKGGYLVVRVDNLKE--E-----PFDKDD 119 (775)
T ss_pred ccccCCceEEEEEEeccCCCCCCCeEEEEEEEE---------EEEEEEEEecCCCcEEEEEEEecC--c-----CCCCCc
Confidence 57999999999999999555 9999999999 777777665554444 22222211 0 001111
Q ss_pred CCCCC----------ccchhcc--ccChhhhcccCCCchhhHHHHHHHHHHHHh-HHhHHHHhhhhHHHHHHHHHHHHHH
Q 003669 203 PEVPN----------PYLGFLW--RVPASMLSTFRPKKESKRAAEIRRAREELK-RQRKEELEKMREESEMMEKAMDMQK 269 (804)
Q Consensus 203 ~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~-~~~k~el~~~~~~~~~le~e~~~l~ 269 (804)
.++.. .|+.... +.+.+.+....+.+.|.+|+|.+|+.+.+. ..+||+|.+...-..+++.....|.
T Consensus 120 ~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~ 199 (775)
T TIGR00763 120 EEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLK 199 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222 3444444 666777777888999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHH
Q 003669 270 KEEERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAE 349 (804)
Q Consensus 270 ~e~~~~~~~~~r~~~l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~ 349 (804)
+|.+.+..+++...++++++++.|++| -|+++-+.-++.+.+-..- ...++.|++.++...
T Consensus 200 ~ele~l~l~~~I~~~v~~~~~~~qr~~-~Lreqlk~i~~eLg~~~~~---------~~~~~~~~~k~~~~~--------- 260 (775)
T TIGR00763 200 KELELLKLQNKITKKVEEKMEKTQREY-YLREQLKAIKKELGIEKDD---------KDELEKLKEKLEELK--------- 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCc---------hhHHHHHHHHHHhcC---------
Confidence 999999988889999999999999999 6666666544433221111 222233332222110
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccc------cccCccCc
Q 003669 350 REERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDV------KFSDVAGL 423 (804)
Q Consensus 350 ~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~------~f~~~~gl 423 (804)
.-.+-.+.+.+++.+++.-.. .. -...-...-+..++++|+.+......++ .-.++.|+
T Consensus 261 -~~~~~~~~~~~e~~~~~~~~~--------~~------~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~ 325 (775)
T TIGR00763 261 -LPEEVKKVIEKELTKLSLLEP--------SS------SEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGL 325 (775)
T ss_pred -CCHHHHHHHHHHHHHHHcCCC--------CC------chHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCCh
Confidence 111222333444444332110 00 0011123456678889988765542221 12447788
Q ss_pred hhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh---------hhhcc
Q 003669 424 GKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGV 494 (804)
Q Consensus 424 ~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~---------~~~g~ 494 (804)
.+++..+.+.+...... . +. ....++|+||||||||+++++||+.++.+++.++++.... .|+|.
T Consensus 326 ~~~k~~i~~~~~~~~~~---~--~~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 326 KKVKERILEYLAVQKLR---G--KM-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred HHHHHHHHHHHHHHHhh---c--CC-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 88887776654432110 0 11 1125999999999999999999999999999998765432 36777
Q ss_pred chhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc-----cc--------CCCceEEEe
Q 003669 495 GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----FE--------GRGNVITIA 561 (804)
Q Consensus 495 ~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~-----~~--------~~~~viVIa 561 (804)
..+.+...|..+....| |++|||||++.+... + . ..+.|+..+|. +. +.++++||+
T Consensus 400 ~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~-~----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----G-D----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred CCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----C-C----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 77777777777766666 899999999975421 1 1 23556665552 11 235799999
Q ss_pred ecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHH
Q 003669 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 601 (804)
Q Consensus 562 tTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l 601 (804)
|||.++.++++|++ ||+ +|.|+.|+.+++.+|++.++
T Consensus 469 TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 99999999999999 996 78999999999999998876
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=3e-26 Score=247.73 Aligned_cols=230 Identities=19% Similarity=0.209 Sum_probs=174.8
Q ss_pred ccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHh-----cCCceeehhHH
Q 003669 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDEL 519 (804)
Q Consensus 445 ~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~-----~~p~Il~IDEI 519 (804)
..|+++|.+++|+||||||||.+++++|++++.+++.++.+++.+.|+|+.+..++.+|..|+. ..|||||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3788999999999999999999999999999999999999999999999999999999999975 46999999999
Q ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc------------cCCCceEEEeecCCCCCCCccccCCCcccccccCCC
Q 003669 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF------------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (804)
Q Consensus 520 d~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~------------~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 587 (804)
|++++.++. ..+....+.+...||+.+|+. ....+|+||+|||+|+.|||+|+||||||+.| ..
T Consensus 222 DA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999987752 222223344558899888852 23567999999999999999999999999975 48
Q ss_pred CCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCC----CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcc
Q 003669 588 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDG----MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML 663 (804)
Q Consensus 588 Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G----~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~ 663 (804)
|+.++|.+||+.+++...+. ..++..++..++| |.|+--..+..++...-+.+ +..+.+-.. .... .
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~----~g~~~~~~~---l~~~-~ 368 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE----VGVENLGKK---LVNS-K 368 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH----hhHHHHHHH---HhcC-C
Confidence 99999999999999987765 5788889888877 55665556666655443322 122222221 1111 1
Q ss_pred cc-ccccchhhhhHHHHHHHHHHHH
Q 003669 664 DR-KERSSETWRQVAINEAAMAVVA 687 (804)
Q Consensus 664 ~~-~~~~~~e~~~va~hEaGhAvv~ 687 (804)
.. ..........-.+-|.|+.++.
T Consensus 369 ~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 369 KGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 11 1123334445556777887774
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.4e-26 Score=276.28 Aligned_cols=246 Identities=45% Similarity=0.769 Sum_probs=219.0
Q ss_pred ccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~ 491 (804)
+.+.|+++.|+.+.+..+.+++.. +.++..+..+|+..+.|++|+||||||||+|+++||++++.+++.+++.++...|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568899999999999999998876 6778889999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCc
Q 003669 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ldp 571 (804)
.|.....++.+|+.+....|+++||||||.+.+.+.. ..++..+.+++.|+..|+++....+++||++||.++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~---~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE---VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC---CcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 9988888999999999999999999999999876532 2233345678899999998888888999999999999999
Q ss_pred cccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC---------
Q 003669 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--------- 642 (804)
Q Consensus 572 aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~--------- 642 (804)
+++++|||++.+.++.|+.++|.+|++.+.+...+..+.++..++..|.||+++|+..++++|+..+.++.
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999998888888899999999999999999999999998876541
Q ss_pred ----------CCCcCHHHHHHHHHHHHcC
Q 003669 643 ----------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 ----------~~~It~edi~~Al~~~~~g 661 (804)
...++.+|+..|+..+...
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhcccc
Confidence 1247889999998876543
No 39
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.94 E-value=1.3e-25 Score=270.16 Aligned_cols=452 Identities=19% Similarity=0.263 Sum_probs=295.0
Q ss_pred chhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCCCCC
Q 003669 127 TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKKPEV 205 (804)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (804)
.+|++++++++|.++.++|||++++.++|+ .|..+-++....-|| +.-+.+.- ++.+..+.
T Consensus 66 ~dLy~VGtla~I~~~~~l~DG~~~Ilv~Gl---------~RfrI~~~~~~~py~~A~Ve~l~~---------~~~~~~e~ 127 (784)
T PRK10787 66 NDLFTVGTVASILQMLKLPDGTVKVLVEGL---------QRARISALSDNGEHFSAKAEYLES---------PTIDEREQ 127 (784)
T ss_pred ccccCccEEEEEEEeeECCCCeEEEEEEEE---------EEEEEEEEEcCCCCEEEEEEEecC---------CCCCchHH
Confidence 579999999999999999999999999999 777776665554443 33222211 11111121
Q ss_pred CC----------ccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003669 206 PN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERR 275 (804)
Q Consensus 206 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k~el~~~~~~~~~le~e~~~l~~e~~~~ 275 (804)
.. .|+.....++++++..+.+++.|.+|+|.+|+.+.+...+||+|.+......+++.....|++|.+.+
T Consensus 128 ~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil 207 (784)
T PRK10787 128 EVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLL 207 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHhhhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 45555667788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 276 RKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKK 355 (804)
Q Consensus 276 ~~~~~r~~~l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ 355 (804)
+.+++...++++++++.|+|| -|+++-+.-++.+.+-..- ....+.|+..++. ...-.+-
T Consensus 208 ~l~~~I~~~v~~~~~k~q~e~-~lreq~~~i~~elg~~~~~---------~~~~~~~~~~~~~----------~~~~~~~ 267 (784)
T PRK10787 208 QVEKRIRNRVKKQMEKSQREY-YLNEQMKAIQKELGEMDDA---------PDENEALKRKIDA----------AKMPKEA 267 (784)
T ss_pred HHHHHHHHHHHHHHhhhhhhh-cchhhhhhhcccccCCCcc---------hhHHHHHHHHHHh----------cCCCHHH
Confidence 988889999999999999999 5665555433322211110 1122222222210 0011122
Q ss_pred HHHHHHHHhhccccchhhhhhhhhcCchHHHHhhhhhHHH-----HHHHHhcCCCCcccccCccc------cccCccCch
Q 003669 356 LRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGA-----RVRRAYGKGLPQYLERGVDV------KFSDVAGLG 424 (804)
Q Consensus 356 ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-----~vs~~tgipv~k~~~~~~~~------~f~~~~gl~ 424 (804)
.+...+|+.+++. +....... -+...+.+|+.+......++ .-.++.|+.
T Consensus 268 ~~~~~~e~~~~~~-------------------~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~ 328 (784)
T PRK10787 268 KEKAEAELQKLKM-------------------MSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLE 328 (784)
T ss_pred HHHHHHHHHHHHh-------------------CCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHH
Confidence 2334444444332 11111112 22333467777665543222 224588999
Q ss_pred hHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh---------hhhccc
Q 003669 425 KIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGVG 495 (804)
Q Consensus 425 ~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~---------~~~g~~ 495 (804)
+++..+.+........ .. .....++|+||||+|||++++.+|+.++.++++++++...+ .|.|..
T Consensus 329 ~vK~~i~~~l~~~~~~---~~---~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~ 402 (784)
T PRK10787 329 RVKDRILEYLAVQSRV---NK---IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSM 402 (784)
T ss_pred HHHHHHHHHHHHHHhc---cc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCC
Confidence 9997776655532211 11 01123899999999999999999999999999998876543 266666
Q ss_pred hhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc-----c--------cCCCceEEEee
Q 003669 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----F--------EGRGNVITIAS 562 (804)
Q Consensus 496 ~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~-----~--------~~~~~viVIat 562 (804)
.+.+...+..+...+| |++|||||++..+..+ .....|+..+|. + .+.+++++|+|
T Consensus 403 ~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 403 PGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred CcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 6666555655544555 8999999999764211 135666666663 1 13378999999
Q ss_pred cCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC-----CCC---Chhc---HHHHH-hhCCCCcHHHHHHH
Q 003669 563 TNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-----PMA---DDVD---YLAVA-SMTDGMVGAELANI 630 (804)
Q Consensus 563 TN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-----~l~---~~~d---l~~la-~~t~G~sg~DL~~L 630 (804)
+|.. .|+|+|++ ||. +|.+..++.++..+|++.++... .+. -.++ ...++ .++..+-.|.|+.+
T Consensus 472 aN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~ 547 (784)
T PRK10787 472 SNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLERE 547 (784)
T ss_pred CCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHH
Confidence 9988 59999998 996 89999999999999999888421 111 1111 23333 33444445666655
Q ss_pred HHHHHHHHH----HcCC---CCcCHHHHHHHHH
Q 003669 631 VEVAAINMM----RDGR---TEITTDDLLQAAQ 656 (804)
Q Consensus 631 v~~A~~~A~----~~~~---~~It~edi~~Al~ 656 (804)
+...+.... ..+. ..|+.+++...+.
T Consensus 548 I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 548 ISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 554443332 2222 3577777766553
No 40
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=4.7e-26 Score=278.19 Aligned_cols=397 Identities=21% Similarity=0.251 Sum_probs=280.9
Q ss_pred CccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHh-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 207 NPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQR-KEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKY 285 (804)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~-k~el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~~l 285 (804)
+..+..+-.++++|++.+..||+|.+|+|++||+..++... .++++++.+++..++.+..++.++.+..... |+.++
T Consensus 362 d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 439 (852)
T TIGR03346 362 DPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKE--RLEDL 439 (852)
T ss_pred HHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHH--HHHHH
Confidence 34555667889999999999999999999999999887544 3568888888999998888887765544444 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003669 286 EESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEG 365 (804)
Q Consensus 286 ~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~ 365 (804)
++++++++.++..+...|..++..++.+..+ +..+........+.++..+..+..+..+..++++++.+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (852)
T TIGR03346 440 EKELAELEEEYADLEEQWKAEKAAIQGIQQI---------KEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQA 510 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHH
Confidence 9999999999999999999999877777666 5555555544554555555555555566666666666654
Q ss_pred ccccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccccc
Q 003669 366 LEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRR 445 (804)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~ 445 (804)
++.... . . .........++..++++++++|||||+..+...+..........+.+.+.++..++..+........
T Consensus 511 ~~~~~~---~-~-~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~ 585 (852)
T TIGR03346 511 AEAKLG---E-E-TKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSR 585 (852)
T ss_pred HHHHhh---h-c-cccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Confidence 332110 0 0 0122345568899999999999999999988776655443333444555555555555544444444
Q ss_pred cCccc---C-CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh------------hhccchhhHHHHHHHH
Q 003669 446 RGVRI---P-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEA 506 (804)
Q Consensus 446 ~gl~i---~-~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~~a 506 (804)
.|+.. | ..++|+||+|||||++|++|+..+ +.++++++|+++... |+|.... ..+.+.+
T Consensus 586 ~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v 663 (852)
T TIGR03346 586 AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAV 663 (852)
T ss_pred ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHH
Confidence 55543 2 348999999999999999999976 468999999887543 2333222 3466777
Q ss_pred HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCC----------
Q 003669 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD---------- 567 (804)
Q Consensus 507 ~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~---------- 567 (804)
+..+.+|++||||+++.+. +++.|++.|+.- .+..+++||+|||...
T Consensus 664 ~~~p~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~ 729 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGD 729 (852)
T ss_pred HcCCCcEEEEeccccCCHH--------------HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccc
Confidence 7788889999999998766 788888888642 1246789999999732
Q ss_pred ---------------CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC-------CCC---ChhcHHHHHhh--CC
Q 003669 568 ---------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVASM--TD 620 (804)
Q Consensus 568 ---------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-------~l~---~~~dl~~la~~--t~ 620 (804)
.+.|+|+. |+|.++.|.+++.+...+|+...+... .+. ++.....++.. ..
T Consensus 730 ~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~ 807 (852)
T TIGR03346 730 DYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDP 807 (852)
T ss_pred cHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCC
Confidence 24577877 999999999999999999998766421 111 11223445544 22
Q ss_pred CCcHHHHHHHHHHHHHH
Q 003669 621 GMVGAELANIVEVAAIN 637 (804)
Q Consensus 621 G~sg~DL~~Lv~~A~~~ 637 (804)
.+..+.|.++++.....
T Consensus 808 ~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 808 VYGARPLKRAIQREIEN 824 (852)
T ss_pred CCCchhHHHHHHHHHHH
Confidence 46677887777766543
No 41
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7e-27 Score=256.83 Aligned_cols=247 Identities=32% Similarity=0.542 Sum_probs=204.3
Q ss_pred ccccccC--ccCchhHHHHHHH-H-HHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-ceeeeccchh
Q 003669 413 VDVKFSD--VAGLGKIRLELEE-I-VKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQF 487 (804)
Q Consensus 413 ~~~~f~~--~~gl~~~~~~l~~-l-v~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-~~~~i~~s~~ 487 (804)
+++.|.+ ++|+++....+-. + ...+-.+....++|++--+|+||+||||||||.+||.|..-++. +---+++.+.
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5667766 4577765544422 1 11233466778899999999999999999999999999987743 3445789999
Q ss_pred hhhhhccchhhHHHHHHHHHh--------cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEE
Q 003669 488 VEIYVGVGASRVRSLYQEAKD--------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~--------~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viV 559 (804)
.++|+|+.+.++|.+|..|.+ ..-.|+++||||+++..|+...++. .-...++|+||.-||+...-.|++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEEE
Confidence 999999999999999998853 1235899999999999987654432 2345689999999999999999999
Q ss_pred EeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC----CCCChhcHHHHHhhCCCCcHHHHHHHHHHHH
Q 003669 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMADDVDYLAVASMTDGMVGAELANIVEVAA 635 (804)
Q Consensus 560 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~ 635 (804)
|+-||+.|.||.+|+|||||...+++.+||...|.+|++.|.... .+..++|+.++|.+|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654 4568999999999999999999999999998
Q ss_pred HHHHHcC---------------CCCcCHHHHHHHHHHHHc
Q 003669 636 INMMRDG---------------RTEITTDDLLQAAQIEER 660 (804)
Q Consensus 636 ~~A~~~~---------------~~~It~edi~~Al~~~~~ 660 (804)
..|..+. .-.|+.+||..|++.+..
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 8877541 135999999999996654
No 42
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.94 E-value=7.2e-26 Score=275.00 Aligned_cols=384 Identities=18% Similarity=0.212 Sum_probs=267.2
Q ss_pred CCCCccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHh-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 204 EVPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQR-KEELEKMREESEMMEKAMDMQKKEEERRRKKEIRL 282 (804)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~-k~el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~ 282 (804)
.+++..+..+-.++.+|+..++.||++.+|+|++||+..+++.. ..+++.+.+++.+++.++..+..+........++.
T Consensus 373 ~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (852)
T TIGR03345 373 LILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERL 452 (852)
T ss_pred eeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Confidence 34556677888999999999999999999999999999987644 34577888888888888877755432111112366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 283 QKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERE 362 (804)
Q Consensus 283 ~~l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~leke 362 (804)
.++++++++++++++.+...|+.|++....+..+ .. +... ............+..++.++++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~ 514 (852)
T TIGR03345 453 AELRAELAALEAELAALEARWQQEKELVEAILAL---------RA-------ELEA--DADAPADDDAALRAQLAELEAA 514 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-------Hhhh--cccchhhhhHHHHHHHHHHHHH
Confidence 7788999999999999999999988644433222 00 0000 0000012222334455555555
Q ss_pred HhhccccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhcccccc
Q 003669 363 LEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEM 442 (804)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~ 442 (804)
+..... ........++..++++++++|||||+.++..++..........+.+.+.++++++..+.....
T Consensus 515 ~~~~~~-----------~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~ 583 (852)
T TIGR03345 515 LASAQG-----------EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIR 583 (852)
T ss_pred HHHHhh-----------ccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHH
Confidence 443321 122334558889999999999999999998877766555555677777777777777666555
Q ss_pred ccccCcccC---Cc-EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh------------hhccchhhHHHHH
Q 003669 443 YRRRGVRIP---GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLY 503 (804)
Q Consensus 443 ~~~~gl~i~---~g-vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf 503 (804)
..+.|+..| .| ++|+||+|||||+|+++||..+ ...++.++|+++.+. |+|+..+. .+.
T Consensus 584 ~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~ 661 (852)
T TIGR03345 584 TARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLT 661 (852)
T ss_pred HHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHH
Confidence 555565543 34 8999999999999999999988 457899999988654 55554443 367
Q ss_pred HHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCCC-------
Q 003669 504 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD------- 567 (804)
Q Consensus 504 ~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~~------- 567 (804)
+.++..+++||+||||+++++. +++.|++.+|... +..+.+||+|||...
T Consensus 662 ~~v~~~p~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred HHHHhCCCcEEEEechhhcCHH--------------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 7778889999999999998765 7888888887532 236789999998521
Q ss_pred ----------------------CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC--------CCC---ChhcHHH
Q 003669 568 ----------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA---DDVDYLA 614 (804)
Q Consensus 568 ----------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--------~l~---~~~dl~~ 614 (804)
.+.|+|++ |++ +|.|.+++.++..+|+...+... ++. ++.-...
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~ 804 (852)
T TIGR03345 728 ADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEH 804 (852)
T ss_pred cCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHH
Confidence 25678887 897 89999999999999998776442 221 1222444
Q ss_pred HHhhCC--CCcHHHHHHHHHHHH
Q 003669 615 VASMTD--GMVGAELANIVEVAA 635 (804)
Q Consensus 615 la~~t~--G~sg~DL~~Lv~~A~ 635 (804)
++.... .+-.|.|..+++.-.
T Consensus 805 La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 805 IVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHcCCCCCChHHHHHHHHHHH
Confidence 555443 245677777776543
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=272.20 Aligned_cols=249 Identities=33% Similarity=0.573 Sum_probs=214.3
Q ss_pred ccCccccccCccCchhHHHHHHHHHHh-ccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh-----ccceeeec
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSIS 483 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~ 483 (804)
.....+.|++++|++.++..+++.+.. +..++.|.++++..|+|+||+||||||||..++++|..+ ...|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 344678999999999999999999887 778999999999999999999999999999999999876 34566667
Q ss_pred cchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec
Q 003669 484 ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (804)
Q Consensus 484 ~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT 563 (804)
+.+..+.|+|..+..++.+|+.|+...|+|+|+||||.+++.+... .......+...||..||++..++.|+||++|
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 7777888999999999999999999999999999999998876421 1223345788999999999999999999999
Q ss_pred CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 003669 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (804)
Q Consensus 564 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~ 642 (804)
|+++.+||+|+||||||+.++|+.|+.+.|.+|+..|.++-.-. ...-+..+|..|.||.|+||+.+|.+|++++.++.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999998766422 33447889999999999999999999999998763
Q ss_pred C----------------CCcCHHHHHHHHHHHHcC
Q 003669 643 R----------------TEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 ~----------------~~It~edi~~Al~~~~~g 661 (804)
- ..+...||..|+.++...
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 2 236677777777766543
No 44
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-24 Score=239.65 Aligned_cols=247 Identities=32% Similarity=0.490 Sum_probs=208.3
Q ss_pred cccCccccccCccCchhHHHHHHHHHHhcc-ccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchh
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~-~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~ 487 (804)
.....++.|+++.|+...+..+.+++.+.. .+..|..+. .+++|+||.||||+|||.|+++||.+.+..|+.++.+.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 345567899999999999999999888743 355554332 234689999999999999999999999999999999999
Q ss_pred hhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccC--CCceEEEeecCC
Q 003669 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNR 565 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~--~~~viVIatTN~ 565 (804)
.+.|+|..+..++.+|.-|+...|+|+||||+|.++..+ .+...+..+....+++..+++... .++|+||+|||.
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R---s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR---SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc---CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999887 344566667788888888887543 458999999999
Q ss_pred CCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC-CCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--
Q 003669 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-- 642 (804)
Q Consensus 566 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~-~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~-- 642 (804)
|+.+|.+++| ||.+.+++|+|+.+.|..+|...+.+. ....+.|+..++..|+||++.||.++|.+|+..-.+..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999877 33456789999999999999999999999987544332
Q ss_pred -----------CCCcCHHHHHHHHHHHHcC
Q 003669 643 -----------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 -----------~~~It~edi~~Al~~~~~g 661 (804)
...++..|+..++..+...
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2346677777777766554
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.88 E-value=4.4e-22 Score=242.77 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=215.4
Q ss_pred CCCccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQ 283 (804)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k-~el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~ 283 (804)
++...+..+..++.+|+..+..||++.+|+|+++|+..+..... ++++++.+++.+++.+..++..+.+- ++..
T Consensus 365 i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 439 (821)
T CHL00095 365 ISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF-----ETAK 439 (821)
T ss_pred CCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch-----HHHH
Confidence 44566777888899999999999999999999999998865322 23444445554444444444333211 1333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 284 KYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLEREL 363 (804)
Q Consensus 284 ~l~~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel 363 (804)
.++.+..++++++..+...|..++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 464 (821)
T CHL00095 440 QLRDREMEVRAQIAAIIQSKKTEEE------------------------------------------------------- 464 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-------------------------------------------------------
Confidence 3444444555555555555544110
Q ss_pred hhccccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccc
Q 003669 364 EGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMY 443 (804)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~ 443 (804)
.......++..++++++++|||||+.++..++..........+.+.+.++++++..+......
T Consensus 465 -----------------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~ 527 (821)
T CHL00095 465 -----------------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRR 527 (821)
T ss_pred -----------------ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHH
Confidence 000123478889999999999999999988877766666666777777777777777666555
Q ss_pred cccCcccC---C-cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh------------hhccchhhHHHHHH
Q 003669 444 RRRGVRIP---G-GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQ 504 (804)
Q Consensus 444 ~~~gl~i~---~-gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~ 504 (804)
.+.|+..| . .++|+||+|||||+||++||..+ +.++++++++++.+. |+|.... ..+.+
T Consensus 528 ~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~ 605 (821)
T CHL00095 528 ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTE 605 (821)
T ss_pred HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHH
Confidence 56666443 2 38999999999999999999977 467899999887542 3443332 34777
Q ss_pred HHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCCC-------
Q 003669 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPDI------- 568 (804)
Q Consensus 505 ~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~~------- 568 (804)
.++..+++|++|||+|++.+. +++.|++.|+.. .+..+++||+|||....
T Consensus 606 ~~~~~p~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~ 671 (821)
T CHL00095 606 AVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSG 671 (821)
T ss_pred HHHhCCCeEEEECChhhCCHH--------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcc
Confidence 788888899999999999776 788888888852 12468999999985321
Q ss_pred ------------------------------CCccccCCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003669 569 ------------------------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 569 ------------------------------LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
+.|+|++ |+|.+|.|.+.+.++..+|++..+..
T Consensus 672 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 672 GLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred ccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3356777 99999999999999999999877753
No 46
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.88 E-value=7.2e-23 Score=211.76 Aligned_cols=130 Identities=32% Similarity=0.363 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHcCcccc-ccccchhhhhHHHHHHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCcccccccc
Q 003669 647 TTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 725 (804)
Q Consensus 647 t~edi~~Al~~~~~g~~~~-~~~~~~e~~~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~ 725 (804)
|++||.+|++++..|...+ ...+..+++++|+||+||||+++++++..+|.+|||.|| |.++||+.+. | .++...
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr-g~~~G~~~~~-~--~~~~~~ 76 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR-GSALGFTQFT-P--DEDRYI 76 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT-CCCCHCCEEC-H--HTT-SS
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC-CCcceeEEec-c--chhccc
Confidence 6789999999999994332 334889999999999999999999998899999999999 7799999998 5 445567
Q ss_pred CCHHHHHHHHHHHhchHHHHHHHhCCCCccccccchhhhhhhHHHHHHhhhhhhhhh
Q 003669 726 LSRQSLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLC 782 (804)
Q Consensus 726 ~tk~~ll~~I~v~LAGRaAEel~fG~~~istGa~~Dl~~at~~~~a~~~~~~~g~~~ 782 (804)
.||.+++++|+++|||||||+++||.+++|+|+++||++||. +|++|+..+||-.
T Consensus 77 ~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~--iA~~mv~~~Gm~~ 131 (213)
T PF01434_consen 77 RTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATE--IARKMVASYGMGD 131 (213)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHH--HHHHHHHTST-TT
T ss_pred ccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHH--HHHHHHHHhCCCC
Confidence 999999999999999999999999988899999999999986 8999998888654
No 47
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3e-21 Score=219.29 Aligned_cols=327 Identities=19% Similarity=0.282 Sum_probs=222.9
Q ss_pred cCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 224 FRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDARDNYRYMANVW 303 (804)
Q Consensus 224 ~~~~~~~~~l~D~~aa~~~~~~~~k~el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~~l~~el~~l~~e~~~l~~~w 303 (804)
....+++.+|+|+.||...+...+.+++.+.-..-.+|++.+.-+++|.+..+.++..-+++++++..-+++| -|+++.
T Consensus 244 ~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~y-lL~eQl 322 (906)
T KOG2004|consen 244 LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREY-LLREQL 322 (906)
T ss_pred HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHH-HHHHHH
Confidence 4457899999999999999999999999999999999999999999999998888778888888888888888 555554
Q ss_pred HHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCch
Q 003669 304 ENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPH 383 (804)
Q Consensus 304 ~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~ 383 (804)
+.-|..+..-..- +. ...+...++... ...-..-++...+|+.++..-.. ..
T Consensus 323 k~IKkeLg~e~Dd---------kd------~~~~~~~er~~~---~~~P~~v~kv~~eEl~kL~~le~--------~~-- 374 (906)
T KOG2004|consen 323 KAIKKELGIEKDD---------KD------ALVEKFRERIKS---LKMPDHVLKVIDEELTKLKLLEP--------SS-- 374 (906)
T ss_pred HHHHHhhCCCccc---------hh------hHHHHHHHHhhh---ccCcHHHHHHHHHHHHHHhccCc--------cc--
Confidence 4433322111111 00 000100011100 00111122223333332221000 00
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCCcccccC------ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEE
Q 003669 384 LKMAMQFMKSGARVRRAYGKGLPQYLERG------VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLC 457 (804)
Q Consensus 384 ~~~~v~~~~i~~~vs~~tgipv~k~~~~~------~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~ 457 (804)
-...-...-+.+.|.+|+.+..... ..+.-+++.|+.+++.++-+.+.. ..+.....-++ +||+
T Consensus 375 ----sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV---~kLrgs~qGkI---lCf~ 444 (906)
T KOG2004|consen 375 ----SEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAV---GKLRGSVQGKI---LCFV 444 (906)
T ss_pred ----cchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHH---HhhcccCCCcE---EEEe
Confidence 0001112234445567777765442 233447899999999777666543 11222222222 8999
Q ss_pred CCCCCChhHHHHHHhhhhccceeeeccchhhhh---------hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCC
Q 003669 458 GPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (804)
Q Consensus 458 Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~---------~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~ 528 (804)
||||+|||+++|+||..++..|++++.+.+.+. |+|..++++-+.+..+...+| +++|||||+++....+
T Consensus 445 GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qG 523 (906)
T KOG2004|consen 445 GPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG 523 (906)
T ss_pred CCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCC
Confidence 999999999999999999999999999887654 999999999999999999999 8999999999843222
Q ss_pred CCCCCcchhHHHHHHHHHhhhc-------------ccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHH
Q 003669 529 IKGSGGQERDATLNQLLVCLDG-------------FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 595 (804)
Q Consensus 529 ~~~sgge~~~~~l~~LL~~ld~-------------~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~ 595 (804)
. --..||..||- -.+-+.|+||||.|..+.|+++|+. |+. +|.++-+..++..+
T Consensus 524 D----------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~ 590 (906)
T KOG2004|consen 524 D----------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVK 590 (906)
T ss_pred C----------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHH
Confidence 1 12344444442 1234679999999999999999998 987 99999999999999
Q ss_pred HHHHHHcc
Q 003669 596 ILKVHARK 603 (804)
Q Consensus 596 Il~~~l~~ 603 (804)
|.+.||-.
T Consensus 591 IA~~yLip 598 (906)
T KOG2004|consen 591 IAERYLIP 598 (906)
T ss_pred HHHHhhhh
Confidence 99998743
No 48
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.8e-18 Score=182.81 Aligned_cols=199 Identities=25% Similarity=0.400 Sum_probs=154.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCc-eeehhHHHHhhhhcCCCC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPS-VVFIDELDAVGRERGLIK 530 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~-Il~IDEId~l~~~r~~~~ 530 (804)
++++||||||||||.+++-||...|..+-.++++++.-. -.+....+..+|+++....-+ ++||||.|.++..+....
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 569999999999999999999999999988888875432 223445678899999876544 689999999998876433
Q ss_pred CCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC---
Q 003669 531 GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--- 607 (804)
Q Consensus 531 ~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~--- 607 (804)
-.+..+..+|.||-.-- .....++++.+||.|..+|.++-. |||.+|+||+|..++|.++|..++.+....
T Consensus 464 --mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 464 --MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred --hcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 34566778999884433 344578889999999999999988 999999999999999999999888543211
Q ss_pred ------------------------ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 608 ------------------------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 608 ------------------------~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
-+..+.+.|..|.||||++|..|+--....+.-+....++..-|.+.++.
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 01125677889999999999999876655555555566776666665543
No 49
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.3e-20 Score=220.45 Aligned_cols=310 Identities=19% Similarity=0.142 Sum_probs=238.1
Q ss_pred ccchhccccChhhhcccCCCchhhHHHHHHHHHHHHhHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003669 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKE-ELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (804)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~aa~~~~~~~~k~-el~~~~~~~~~le~e~~~l~~e~~~~~~~~~r~~~l~ 286 (804)
..+..+..++++|++..-.+|.+.++.|++||....+...+. +|+...+....++.++.+|+++.+....+ |+. .
T Consensus 377 ~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~--r~~--~ 452 (898)
T KOG1051|consen 377 ESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHK--RPS--L 452 (898)
T ss_pred cccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhcc--ccc--c
Confidence 556677788889999999999999999999999998665543 47777777777888888888887754444 555 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003669 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (804)
Q Consensus 287 ~el~~l~~e~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~ 366 (804)
+.+......+..++..|..++...+.+... +...+.-.- +++.++..+...+....+..++ ... .+
T Consensus 453 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~---------~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~-~~-- 518 (898)
T KOG1051|consen 453 ESLAPSKPTQQPLSASVDSERSVIEELKLK---------KNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DEL-SE-- 518 (898)
T ss_pred ccccccccccccchhhhccchhHHhhhccc---------cCCcccchh-hhcccCCCCcchhhhccccccc-hhh-hh--
Confidence 777777788888999999888877777655 333333332 3444555555555555555555 111 00
Q ss_pred cccchhhhhhhhhcCchHHHHhhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhcccccccccc
Q 003669 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (804)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~ 446 (804)
.+..+. .....+..++++|+|+|+......+....+.....+.+.+.++++++..+.......+.
T Consensus 519 ----------~~~~~~-----~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~ 583 (898)
T KOG1051|consen 519 ----------KSNDNQ-----GGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA 583 (898)
T ss_pred ----------hccccc-----CCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 000110 16678899999999999999988888888888889999999999999999998888888
Q ss_pred CcccC--Cc-EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh---------hhccchhhHHHHHHHHHhcCC
Q 003669 447 GVRIP--GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAP 511 (804)
Q Consensus 447 gl~i~--~g-vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~---------~~g~~~~~l~~lf~~a~~~~p 511 (804)
|+..| .+ ++|.||.|+|||.|+++||..+ ...++++++++|++. |+|.... ..+.+.+++.++
T Consensus 584 gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~ 661 (898)
T KOG1051|consen 584 GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPY 661 (898)
T ss_pred ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCc
Confidence 88875 22 9999999999999999999976 578999999987653 5655544 469999999999
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCC
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP 566 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~ 566 (804)
+||+|||||+.++. +++.|++.+|... +..|++||+|+|.-
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 99999999999887 8898999888632 34689999999864
No 50
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.5e-18 Score=189.37 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=154.0
Q ss_pred ccccCccCchhHHHH-HHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhc
Q 003669 415 VKFSDVAGLGKIRLE-LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 493 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~-l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g 493 (804)
-.|+.+.--.+.+.+ ++++..+.....-|++.|....+|.||+||||||||+++-|+|+.++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 345544433334433 367777888889999999999999999999999999999999999999998888876432
Q ss_pred cchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC--CCCCCCc--chhHHHHHHHHHhhhcccCCC--ceEEEeecCCCC
Q 003669 494 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG--LIKGSGG--QERDATLNQLLVCLDGFEGRG--NVITIASTNRPD 567 (804)
Q Consensus 494 ~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~--~~~~sgg--e~~~~~l~~LL~~ld~~~~~~--~viVIatTN~~~ 567 (804)
. ..++.++-.. .+-+||+|++||....-+. .....+. .....++.-||+.+|++.... --|||+|||+++
T Consensus 274 -n-~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -D-SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -c-HHHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 2266666543 3447999999998754222 1111111 235578999999999988765 579999999999
Q ss_pred CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCC--CcHHHHHHH
Q 003669 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG--MVGAELANI 630 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G--~sg~DL~~L 630 (804)
.|||||+||||+|.+|++...+..+-..++..++.-.. +..-+.++.....+ .|++|+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999987532 22234444444333 588888654
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=1.6e-18 Score=163.75 Aligned_cols=130 Identities=45% Similarity=0.718 Sum_probs=114.7
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcC-CceeehhHHHHhhhhcCCCCCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGS 532 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~-p~Il~IDEId~l~~~r~~~~~s 532 (804)
++|+||||||||++++.+|..++.+++.++++++...+.+.....+..+|+.+.... |+|++|||+|.+.... ..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998888888889999999998887 9999999999998875 234
Q ss_pred CcchhHHHHHHHHHhhhcccCC-CceEEEeecCCCCCCCccccCCCcccccccCCC
Q 003669 533 GGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (804)
Q Consensus 533 gge~~~~~l~~LL~~ld~~~~~-~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~ 587 (804)
........+..|+..++..... .+++||++||.++.+++++++ +||+..|+++.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5556667889999999976654 569999999999999999998 89999998863
No 52
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-18 Score=208.45 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=142.7
Q ss_pred hhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccccccCccc---C-CcEEEECCCCCC
Q 003669 388 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---P-GGILLCGPPGVG 463 (804)
Q Consensus 388 v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i---~-~gvLL~Gp~GtG 463 (804)
++..++.+++++|+|||+..+..++..........+.+.+.++++++..+.........|+.. | ++++|+||+|||
T Consensus 421 v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_pred cChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCC
Confidence 344567888999999999988776554433333334444455555555444433333344433 3 349999999999
Q ss_pred hhHHHHHHhhhhccceeeeccchhhhh------------hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCC
Q 003669 464 KTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (804)
Q Consensus 464 KTtLakaLA~el~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~ 531 (804)
||++++++|..++.+++.++|+++.+. |+|.... ..+.+.++..+++|++|||||++.+.
T Consensus 501 KT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~~~------ 572 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHPD------ 572 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhhHH------
Confidence 999999999999999999999987642 2332222 23566667777899999999999765
Q ss_pred CCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCC-------------------------CCCCccccCCC
Q 003669 532 SGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------------------DILDPALVRPG 577 (804)
Q Consensus 532 sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~-------------------------~~LdpaLlrpg 577 (804)
+++.|++.||.. .+..+++||+|||.. ..+.|+|++
T Consensus 573 --------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~-- 642 (758)
T PRK11034 573 --------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN-- 642 (758)
T ss_pred --------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--
Confidence 788898888742 123578999999932 136688888
Q ss_pred cccccccCCCCCHHHHHHHHHHHHc
Q 003669 578 RFDRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 578 Rfd~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
|+|.+|.|++.+.++..+|+...+.
T Consensus 643 Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 643 RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=2.4e-17 Score=178.10 Aligned_cols=224 Identities=18% Similarity=0.303 Sum_probs=160.1
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCC-c--EEEECCCCCChhHHHHHHhhhhc-------cceeeeccc
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-G--ILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISAS 485 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~-g--vLL~Gp~GtGKTtLakaLA~el~-------~~~~~i~~s 485 (804)
.++++.|+..++..+.+++..+.....+...|+..+. | ++|+||||||||++|+++|+.+. .+++.++.+
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3457899999999999988775555556667776653 4 89999999999999999998652 358899998
Q ss_pred hhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC
Q 003669 486 QFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (804)
Q Consensus 486 ~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~ 565 (804)
++...|+|........+++.+ .++|+||||++.+...+ +.+......+..|+..|+. ...+++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~-----~~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD-----NERDYGSEAIEILLQVMEN--QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC-----CccchHHHHHHHHHHHHhc--CCCCEEEEEeCCc
Confidence 988889988776666677664 34699999999985432 1122335577888888884 3466888888764
Q ss_pred CC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCC--CChhc---HHHHHhh--CCCCc-HHHHHHHHH
Q 003669 566 PD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVD---YLAVASM--TDGMV-GAELANIVE 632 (804)
Q Consensus 566 ~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l--~~~~d---l~~la~~--t~G~s-g~DL~~Lv~ 632 (804)
.. .++|+|.+ ||+.+|.|++|+.+++.+|+..++.+... .++.. ...+... .+.+. ++++.+++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 34699988 99999999999999999999999976543 22221 1112221 23444 899999999
Q ss_pred HHHHHHHHc----CCCCcCHHHH
Q 003669 633 VAAINMMRD----GRTEITTDDL 651 (804)
Q Consensus 633 ~A~~~A~~~----~~~~It~edi 651 (804)
.|...-..+ +...++.+|+
T Consensus 249 ~~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 249 RARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHH
Confidence 887654332 3334555554
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=3.6e-17 Score=174.53 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=152.8
Q ss_pred ccCccCchhHHHHHHHHHHhccccccccccCcccCC---cEEEECCCCCChhHHHHHHhhhh-------ccceeeeccch
Q 003669 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG---GILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQ 486 (804)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~---gvLL~Gp~GtGKTtLakaLA~el-------~~~~~~i~~s~ 486 (804)
+++..|++.++..+++++.++.....+...|...++ +++|+|||||||||+|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 567889999999999998876554455556776554 48999999999999999999864 23677888889
Q ss_pred hhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
+...|+|.....+..+|+.+. ++|+||||+|.+... .........++.|+..|+.. ..++++|++++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 888899888887788887653 579999999998531 11122345778888888843 4566666665432
Q ss_pred C-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHh---------hCCCCcHHHHHHHH
Q 003669 567 D-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVAS---------MTDGMVGAELANIV 631 (804)
Q Consensus 567 ~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~---------~t~G~sg~DL~~Lv 631 (804)
+ .++|++.+ ||+..|.|+.|+.+++.+|++.++......- +.-+..++. ....-+++.+.+++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 47889988 9999999999999999999999987654321 111222221 11234678888998
Q ss_pred HHHHHHHH
Q 003669 632 EVAAINMM 639 (804)
Q Consensus 632 ~~A~~~A~ 639 (804)
..|.....
T Consensus 232 e~a~~~~~ 239 (261)
T TIGR02881 232 EKAIRRQA 239 (261)
T ss_pred HHHHHHHH
Confidence 88776554
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=3.8e-18 Score=206.16 Aligned_cols=231 Identities=20% Similarity=0.232 Sum_probs=162.0
Q ss_pred hhhhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccccccCccc---CC-cEEEECCCCCC
Q 003669 388 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GILLCGPPGVG 463 (804)
Q Consensus 388 v~~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i---~~-gvLL~Gp~GtG 463 (804)
++..++..++++|+|+|+..+..++..........+.+.+.++++++..+.......+.|+.. |. .++|+||+|||
T Consensus 417 v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvG 496 (731)
T TIGR02639 417 VSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVG 496 (731)
T ss_pred cCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCcc
Confidence 555667788888999998877655444333333344555555555555554444444556543 33 38999999999
Q ss_pred hhHHHHHHhhhhccceeeeccchhhhh------------hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCC
Q 003669 464 KTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (804)
Q Consensus 464 KTtLakaLA~el~~~~~~i~~s~~~~~------------~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~ 531 (804)
||+||++||..++.+++.++++++.+. |+|.... +.+.+.++..+++|++|||+|+++++
T Consensus 497 KT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka~~~------ 568 (731)
T TIGR02639 497 KTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKAHPD------ 568 (731)
T ss_pred HHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhcCHH------
Confidence 999999999999999999999998653 3333332 34677777888899999999999776
Q ss_pred CCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCC-------------------------CCCccccCCC
Q 003669 532 SGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-------------------------ILDPALVRPG 577 (804)
Q Consensus 532 sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~-------------------------~LdpaLlrpg 577 (804)
+.+.|++.||+. .+..+++||+|||... .+.|+|+.
T Consensus 569 --------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~-- 638 (731)
T TIGR02639 569 --------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN-- 638 (731)
T ss_pred --------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--
Confidence 788888888753 1245789999998642 25778877
Q ss_pred cccccccCCCCCHHHHHHHHHHHHccC-------CCC---ChhcHHHHHh--hCCCCcHHHHHHHHHHHHH
Q 003669 578 RFDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVAS--MTDGMVGAELANIVEVAAI 636 (804)
Q Consensus 578 Rfd~~I~~~~Pd~~eR~~Il~~~l~~~-------~l~---~~~dl~~la~--~t~G~sg~DL~~Lv~~A~~ 636 (804)
|||.+|.|.+.+.++..+|++..+... ++. ++.....++. ....+..|.|..+++.-..
T Consensus 639 Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 639 RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 999999999999999999999877532 111 1222344444 3445667777777765543
No 56
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.2e-17 Score=172.64 Aligned_cols=201 Identities=24% Similarity=0.306 Sum_probs=154.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhc---------cceeeeccchhhhhhhccchhhHHHHHHHHHhcC---Cc--eeehh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA---PS--VVFID 517 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~---------~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~---p~--Il~ID 517 (804)
+-+|++||||||||+|+|+||..+. ..++++++..+.++|+++..+.+..+|+++.... .+ .++||
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 3399999999999999999999772 4578999999999999999999999998876532 22 37889
Q ss_pred HHHHhhhhcCC-CCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHH
Q 003669 518 ELDAVGRERGL-IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEI 596 (804)
Q Consensus 518 EId~l~~~r~~-~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~I 596 (804)
|+++++..|.. .+.+.....-+++|.+|.+||.+....||++++|+|..+.||.+|.. |-|.+.++.+|+...+.+|
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHH
Confidence 99999877632 22222333456899999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHccCC-------------CCChh-----cHHHHHh-hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 597 LKVHARKKP-------------MADDV-----DYLAVAS-MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 597 l~~~l~~~~-------------l~~~~-----dl~~la~-~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
++..+.... ....+ ....++. .+.|.|||-|+.+=-.|... .-....++.+++..|+-
T Consensus 336 lkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 336 LKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALL 412 (423)
T ss_pred HHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHh--ccCCCccChHHHHHHHH
Confidence 998765431 00111 1122222 25899999999886655432 22335799999877754
No 57
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=1.1e-16 Score=172.85 Aligned_cols=210 Identities=19% Similarity=0.293 Sum_probs=156.4
Q ss_pred CccCchhHHHHHHHHHHhccccccccccCccc--CC-cEEEECCCCCChhHHHHHHhhhhc-------cceeeeccchhh
Q 003669 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI--PG-GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 488 (804)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i--~~-gvLL~Gp~GtGKTtLakaLA~el~-------~~~~~i~~s~~~ 488 (804)
.+.|+.+++..+.+++.....+..+...|+.. |+ +++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 57899999999999988876666777788775 22 599999999999999999988662 368899998888
Q ss_pred hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC--
Q 003669 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-- 566 (804)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~-- 566 (804)
..|+|.....++.+|+.+. +++|||||++.+...+. .......+++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 8888887777777777653 47999999998854321 112234567888888883 44678888887643
Q ss_pred C---CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhh-------CCCCcHHHHHHHHHHHH
Q 003669 567 D---ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM-------TDGMVGAELANIVEVAA 635 (804)
Q Consensus 567 ~---~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~-------t~G~sg~DL~~Lv~~A~ 635 (804)
+ .++|+|.+ ||+..|.||+|+.+++..|++.++.+.... .......+..+ ..--+++.+.+++..+.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 2 35899999 999999999999999999999999875432 11112333332 22235899999999887
Q ss_pred HHHHH
Q 003669 636 INMMR 640 (804)
Q Consensus 636 ~~A~~ 640 (804)
.....
T Consensus 251 ~~~~~ 255 (284)
T TIGR02880 251 LRQAN 255 (284)
T ss_pred HHHHH
Confidence 65443
No 58
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.5e-17 Score=185.53 Aligned_cols=242 Identities=22% Similarity=0.363 Sum_probs=188.7
Q ss_pred HHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCC
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP 511 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p 511 (804)
.++..+.-+..-...+.+....+||+|+|||||||++++.|.++|.+++.++|.++.....+..+..+...|..++...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44445544444445566666779999999999999999999999999999999999988888888888999999999999
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchh--HHHHHHHHHhhhccc-CCCceEEEeecCCCCCCCccccCCCcccccccCCCC
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQER--DATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 588 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~--~~~l~~LL~~ld~~~-~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~P 588 (804)
+|||+-++|.++.+.. +++.. ...+..++. .|.+. ....++||++|+..+.+++.+.+ -|-..|.++.|
T Consensus 492 avifl~~~dvl~id~d-----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~l 563 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQD-----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPAL 563 (953)
T ss_pred eEEEEeccceeeecCC-----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCC
Confidence 9999999999875432 22222 233444443 33333 56789999999999999999988 78889999999
Q ss_pred CHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHH---c-----------------CCCCcCH
Q 003669 589 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR---D-----------------GRTEITT 648 (804)
Q Consensus 589 d~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~---~-----------------~~~~It~ 648 (804)
+.++|.+||+.++....+..++....++.+|.||+.+|+..++..+-..+.. + ....+++
T Consensus 564 se~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ 643 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTE 643 (953)
T ss_pred CHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecH
Confidence 9999999999999999999999999999999999999999998776322211 1 1146999
Q ss_pred HHHHHHHHHHHcCccccccccchhhhhHHHHHHHH
Q 003669 649 DDLLQAAQIEERGMLDRKERSSETWRQVAINEAAM 683 (804)
Q Consensus 649 edi~~Al~~~~~g~~~~~~~~~~e~~~va~hEaGh 683 (804)
+||..|+.+...... ..........|.||++|.
T Consensus 644 edf~kals~~~~~fs--~aiGAPKIPnV~WdDVGG 676 (953)
T KOG0736|consen 644 EDFDKALSRLQKEFS--DAIGAPKIPNVSWDDVGG 676 (953)
T ss_pred HHHHHHHHHHHHhhh--hhcCCCCCCccchhcccC
Confidence 999999998765421 112334456677777763
No 59
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-15 Score=172.35 Aligned_cols=207 Identities=24% Similarity=0.278 Sum_probs=160.5
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhc----cceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~----~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
++++|.||+|+|||.|+++++.+.. .++..++|+.+...-+......++.+|..+.+++|+|+++|++|.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 4599999999999999999999764 456778888876655555566678899999999999999999999977321
Q ss_pred CCCCCCcchhHHHHHHHH-Hhhhccc-CCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCC
Q 003669 528 LIKGSGGQERDATLNQLL-VCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL-~~ld~~~-~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~ 605 (804)
. ..+........++.++ +.+..+. .+..+.||++.+....|+|.|.+|++|+.++.++.|+..+|.+||+..+.+..
T Consensus 512 ~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 N-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred c-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 1 1122222233344444 3333333 34456899999999999999999999999999999999999999999998775
Q ss_pred CC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHH
Q 003669 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 606 l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~ 659 (804)
.. ..-|++.++..|.||...|+.-++.+|...|..+ +...+|.++|..+++.-.
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 33 2234555999999999999999999998888732 334899999999988654
No 60
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.63 E-value=1.1e-15 Score=175.48 Aligned_cols=273 Identities=18% Similarity=0.208 Sum_probs=184.0
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccchh-hHHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~~-~l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+...... ....+.+..+ .+++|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 448999999999999999999987 4557888888877655433221 1222333332 4679999999988543
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC---CCccccCCCccc--ccccCCCCCHHHHHHHHHHH
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~ 600 (804)
. .....|+..++.+...+..+||+++..|.. +++.+.+ ||. .++.+.+|+.++|..|++..
T Consensus 227 ~------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 133455555555444555567766666654 6788887 775 57899999999999999999
Q ss_pred HccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHH
Q 003669 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (804)
Q Consensus 601 l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~h 679 (804)
+...++. ++..++.++....| +.++|..+++.....+...++ .||.+.+.+++...... ....+...
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~~~~----------~~~~~~~~ 360 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTGK-PITLELAKEALKDLLAA----------QKKKITIE 360 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhhcc----------CCCCCCHH
Confidence 8765443 33346667776654 889999999988777665554 59999999999876422 11235566
Q ss_pred HHHHHHHHhhCCCCCCcceEEEccCCC----CccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCCCcc
Q 003669 680 EAAMAVVAVNFPDLKNIEFVTIAPRAG----RELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQVR 755 (804)
Q Consensus 680 EaGhAvv~~~l~~~~~v~kVsI~pr~G----~alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~~is 755 (804)
++-.+|+.++--.. ..+.-..| . .+...++|+ ....+.+| +..|+..+|||.+-.++++..++.
T Consensus 361 ~i~~~v~~~~~i~~---~~l~~~~R-~~~~~~aR~iamyl----~~~~~~~s----~~~Ig~~fg~rdhstV~~a~~~i~ 428 (450)
T PRK00149 361 NIQKVVAEYYNIKV---SDLKSKSR-TRNIARPRQIAMYL----AKELTDLS----LPEIGRAFGGRDHTTVLHAVRKIE 428 (450)
T ss_pred HHHHHHHHHcCCCH---HHHhCCCC-CcccChHHHHHHHH----HHHhcCCC----HHHHHHHcCCCCHhHHHHHHHHHH
Confidence 77777777654322 22211112 1 122334444 23334455 899999999999999999998888
Q ss_pred ccccchhhh
Q 003669 756 KTLQHPLLF 764 (804)
Q Consensus 756 tGa~~Dl~~ 764 (804)
....+|=..
T Consensus 429 ~~~~~d~~~ 437 (450)
T PRK00149 429 KLLEEDPEL 437 (450)
T ss_pred HHHHhCHHH
Confidence 776666443
No 61
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.9e-14 Score=165.61 Aligned_cols=217 Identities=41% Similarity=0.678 Sum_probs=192.3
Q ss_pred ccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhH
Q 003669 439 HGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 518 (804)
Q Consensus 439 ~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDE 518 (804)
.+..+..++...+.+++++||+|+|||+++++++.. +..+..++..+....++|.....++.+|+.+....|+++++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 345667788899999999999999999999999998 6666888888888999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHH
Q 003669 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 519 Id~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~ 598 (804)
++.+.+.+.. ..+...+.+...++..++++. ...+++++.||.+..++++++++|||++.+.+..|+...+.+|+.
T Consensus 85 ~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~ 160 (494)
T COG0464 85 IDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQ 160 (494)
T ss_pred hhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHH
Confidence 9999887654 445556678899999999888 444888899999999999999999999999999999999999999
Q ss_pred HHHccCCCCChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC------CCCcCHHHHHHHHHHHHc
Q 003669 599 VHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------RTEITTDDLLQAAQIEER 660 (804)
Q Consensus 599 ~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~------~~~It~edi~~Al~~~~~ 660 (804)
.+........+.+...++..+.|++++++..++..+...+.++. ...++.+++.+++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 161 IHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99988888888899999999999999999999999988888775 346899999999988754
No 62
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.59 E-value=6.3e-15 Score=166.97 Aligned_cols=256 Identities=18% Similarity=0.215 Sum_probs=165.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccch-hhHHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+..... ..+..+.+..+ .+++|+|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 358999999999999999999876 467888888887665433211 11222333332 3579999999987543
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCccc--ccccCCCCCHHHHHHHHHHH
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~ 600 (804)
. .....|+..++.....+..+||+++..|. .+++.+.+ ||. ..+.+++|+.++|..|++..
T Consensus 215 ~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 12344555555444444556666666665 45688887 775 47899999999999999999
Q ss_pred HccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHH
Q 003669 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (804)
Q Consensus 601 l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~h 679 (804)
+...++. ++..+..+|.+.. -+.++|..+++.....+...+ ..||.+.+.+++...... ....+..+
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~ 348 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLRA----------KKKEITIE 348 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHH
Confidence 8776554 3334666777665 478999999998877776555 469999999988765322 12347788
Q ss_pred HHHHHHHHhhCCCCCCcceEEEccCCCCccceEeeccCccccccccCCHHHHHHHHHHHhchHH
Q 003669 680 EAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRA 743 (804)
Q Consensus 680 EaGhAvv~~~l~~~~~v~kVsI~pr~G~alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRa 743 (804)
++.++|+.++--....+..-+-....-.+.-.++|+ ....+.+| +..|+..+|||.
T Consensus 349 ~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl----~~~~~~~s----~~~ig~~fg~rd 404 (405)
T TIGR00362 349 NIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYL----AKELTDLS----LPEIGRAFGGRD 404 (405)
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHH----HHHHcCCC----HHHHHHHhCCCC
Confidence 888998877543222221111110000111223333 22334455 888999998885
No 63
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=6.8e-15 Score=170.13 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=160.5
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhh
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (804)
++.|..+ ..+++..|.|||+.|.+++++ +.....++++.+++++++++..+.+........ ++..+
T Consensus 217 ~t~I~~l-d~g~l~~y~Gny~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~-----------k~a~s 282 (530)
T COG0488 217 ATHILEL-DRGKLTPYKGNYSSYLEQKAE--RLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA-----------KKAKS 282 (530)
T ss_pred hhheEEe-cCCceeEecCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----------HHHHH
Confidence 5566777 677999999999999999994 444445555556677777777666544221111 11111
Q ss_pred hhhHHHHHHHHhcCCCCcccccCccccccCcc-CchhHHHHHHHHHHhccc-cccccccCcccCCc--EEEECCCCCChh
Q 003669 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKT 465 (804)
Q Consensus 390 ~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKT 465 (804)
..+..+.+........+........+.|.... ..++.+..++++...|.+ ..++.++++.+.+| |.|+||||+|||
T Consensus 283 r~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKS 362 (530)
T COG0488 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKS 362 (530)
T ss_pred HHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHH
Confidence 11111111110000001111222334666665 488899999999999966 58899999999887 999999999999
Q ss_pred HHHHHHhhhhccceeeeccchhhhh-hhccchhhH---HHHHHHHHhcCCceeehhHHHHhhhhcCCCCC---------C
Q 003669 466 LLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------S 532 (804)
Q Consensus 466 tLakaLA~el~~~~~~i~~s~~~~~-~~g~~~~~l---~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~---------s 532 (804)
||+|.|++.+++..+.+.++..+.. |+.+....+ ..+++.++...|... --++..++...++... |
T Consensus 363 TLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~LS 441 (530)
T COG0488 363 TLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVLS 441 (530)
T ss_pred HHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhcC
Confidence 9999999999888888887765443 555544332 257777777776533 5566677666555433 9
Q ss_pred CcchhHHHHHHHHHhhhcccCCCceEEE-eecCCCC
Q 003669 533 GGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (804)
Q Consensus 533 gge~~~~~l~~LL~~ld~~~~~~~viVI-atTN~~~ 567 (804)
||++.|..+..++ ....|++|+ -+||+.|
T Consensus 442 GGEk~Rl~La~ll------~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 442 GGEKARLLLAKLL------LQPPNLLLLDEPTNHLD 471 (530)
T ss_pred HhHHHHHHHHHHh------ccCCCEEEEcCCCccCC
Confidence 9999999999998 668899888 9999876
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=5.5e-14 Score=152.99 Aligned_cols=210 Identities=21% Similarity=0.276 Sum_probs=147.7
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccc
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~ 495 (804)
.|++..|.++.+..+..++...... -..+.+++|+||||||||+|++++|.+++.++..+.......
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 5778888888887777666532211 123456999999999999999999999987766554432211
Q ss_pred hhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc----------------CCCceEE
Q 003669 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVIT 559 (804)
Q Consensus 496 ~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~----------------~~~~viV 559 (804)
...+...+... ..+.++||||++.+... ....|+..++... ....+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222233322 34579999999998643 2223333333211 1234788
Q ss_pred EeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 560 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
|++||.+..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..++..+.|.. +.+..+++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 8999999999999988 998889999999999999999888654433 2334667888888754 77788888877777
Q ss_pred HHcCCCCcCHHHHHHHHHH
Q 003669 639 MRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 639 ~~~~~~~It~edi~~Al~~ 657 (804)
...+...|+.+++..++..
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 6666677999999999877
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.57 E-value=6.8e-14 Score=154.21 Aligned_cols=213 Identities=22% Similarity=0.254 Sum_probs=152.8
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhc
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 493 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g 493 (804)
...|++..|.++.+..+..++...... -..+.+++|+||||||||+|++++|++++..+..++...+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 457888999998887777666543211 12345699999999999999999999998877666554321
Q ss_pred cchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc----------------CCCce
Q 003669 494 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNV 557 (804)
Q Consensus 494 ~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~----------------~~~~v 557 (804)
....+..++... ..++++||||||.+... ....++..|+... .-.++
T Consensus 89 -~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 -KPGDLAAILTNL--EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -ChHHHHHHHHhc--ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 112233344433 34679999999988542 1222333333211 11347
Q ss_pred EEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003669 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAI 636 (804)
Q Consensus 558 iVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~ 636 (804)
.+|++||.+..++++|++ ||+..+.+++|+.+++.+|++..+....+. ++..+..++..+.|. ++.+..+++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHH
Confidence 889999999999999988 999899999999999999999888766544 223367788888774 4888888888877
Q ss_pred HHHHcCCCCcCHHHHHHHHHHH
Q 003669 637 NMMRDGRTEITTDDLLQAAQIE 658 (804)
Q Consensus 637 ~A~~~~~~~It~edi~~Al~~~ 658 (804)
.+...+...|+.+++..++...
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHh
Confidence 7776666789999999998654
No 66
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=4.8e-14 Score=153.54 Aligned_cols=177 Identities=25% Similarity=0.405 Sum_probs=125.5
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcC----CceeehhHHHHhhhhcC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERG 527 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~----p~Il~IDEId~l~~~r~ 527 (804)
.+++||||||||||||++.||+..+..|..++... .+.+.++.+++.++... -.|+|+|||+.+...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-- 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-- 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--
Confidence 45899999999999999999999999999988643 34466788999886533 369999999998654
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec--CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHc--c
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--K 603 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT--N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~--~ 603 (804)
....||-.++ ++.+++|++| |+.-.+.++|++++| ++.+.+.+.++..++++.-+. .
T Consensus 120 ------------QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 120 ------------QQDALLPHVE----NGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred ------------hhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhh
Confidence 4566776665 5678888666 777799999999654 788999999999999987432 2
Q ss_pred CCCC------ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 003669 604 KPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 604 ~~l~------~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (804)
.++. ++.-...++..+.|-..+ .-+++..+...+ +.+. .++.+++.+++++..
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~-aLN~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARR-ALNLLELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHH-HHHHHHHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 2332 233356677777763333 224444444332 2222 455788877777654
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.54 E-value=4.9e-14 Score=144.65 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=123.1
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~ 492 (804)
....|++..|..+.+..+.-++...... -....+++|+||||+||||||+.||++++.++..+++..+.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 3568999999998887766555543211 11224589999999999999999999999999887764321
Q ss_pred ccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----C-----------CCc
Q 003669 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G-----------RGN 556 (804)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----~-----------~~~ 556 (804)
....+..++.... ...|+||||||.+... ....|+..|+.+. + -.+
T Consensus 88 --k~~dl~~il~~l~--~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLK--EGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT----TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcC--CCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1223333444433 3469999999998655 6677787777532 1 135
Q ss_pred eEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHHHHHHHHHHH
Q 003669 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVA 634 (804)
Q Consensus 557 viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~DL~~Lv~~A 634 (804)
+.+|++|+....+.++|+. ||..+..+..++.++..+|++.......+.-+ .-..++|.++.| +++-.-++++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999988 99988899999999999999988776665533 336778888877 566555555543
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=3.3e-14 Score=165.12 Aligned_cols=272 Identities=14% Similarity=0.125 Sum_probs=177.9
Q ss_pred cEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
.++|+|++|+|||+|+++|++++ +..+.++++.+|.+.+...........|... -..+++|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 38999999999999999999976 4577899998888765533222111223322 2346899999999885431
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC---CCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 604 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~---~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~ 604 (804)
. ....|+..++.+...+..+||++...+ ..+++.|.++.....++.+..|+.+.|..||+.++...
T Consensus 394 --------~---tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 --------S---TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------H---HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1 223444455544444444555444444 35788898833336677999999999999999998877
Q ss_pred CCCChh-cHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHHHHHH
Q 003669 605 PMADDV-DYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAM 683 (804)
Q Consensus 605 ~l~~~~-dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~hEaGh 683 (804)
.+.-.. -+..|+.+.. -+.+.|..+++.....+...+ ..||.+.+..++...... .....+...++-+
T Consensus 463 ~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~~---------~~~~~it~d~I~~ 531 (617)
T PRK14086 463 QLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIPE---------DSAPEITAAAIMA 531 (617)
T ss_pred CCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhcc---------ccCCcCCHHHHHH
Confidence 665333 3556666654 478999999988766665555 469999998888765432 1122455666777
Q ss_pred HHHHhhCCCCCCcceEEEccCCC----CccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCCCcccccc
Q 003669 684 AVVAVNFPDLKNIEFVTIAPRAG----RELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQVRKTLQ 759 (804)
Q Consensus 684 Avv~~~l~~~~~v~kVsI~pr~G----~alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~~istGa~ 759 (804)
+|+.++-.. +..+.-..| + .+.-.++|+ ..+.+.+| +..|...+| |-+..++++..+|.....
T Consensus 532 ~Va~~f~v~---~~dl~s~~R-~~~i~~aRqiAMYL----~r~lt~~S----l~~IG~~Fg-RdHSTV~~A~~kI~~~~~ 598 (617)
T PRK14086 532 ATADYFGLT---VEDLCGTSR-SRVLVTARQIAMYL----CRELTDLS----LPKIGQQFG-RDHTTVMHADRKIRALMA 598 (617)
T ss_pred HHHHHhCCC---HHHHhCCCC-CcccchHHHHHHHH----HHHHcCCC----HHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 777765432 222221222 1 122344454 23344556 889999998 999999999988877655
Q ss_pred ch
Q 003669 760 HP 761 (804)
Q Consensus 760 ~D 761 (804)
.|
T Consensus 599 ~d 600 (617)
T PRK14086 599 ER 600 (617)
T ss_pred hC
Confidence 55
No 69
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=4.6e-14 Score=161.47 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=180.5
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccchh---hHHHHHHHHHhcCCceeehhHHHHhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS---RVRSLYQEAKDNAPSVVFIDELDAVG 523 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~~---~l~~lf~~a~~~~p~Il~IDEId~l~ 523 (804)
.+++|+|++|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+++++|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 358999999999999999999855 3567888888887765432211 122222222 345699999998875
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc--cccccCCCCCHHHHHHHHH
Q 003669 524 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 524 ~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~ 598 (804)
++. . ....|+..++.....+..+|+++...|. .+++.|.+ || +.++.+.+|+.++|.+|++
T Consensus 220 ~k~---------~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YKE---------K---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CCH---------H---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 321 1 3445555555444455555555555554 45788888 66 5677899999999999999
Q ss_pred HHHccCCC---CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-CCCcCHHHHHHHHHHHHcCccccccccchhhh
Q 003669 599 VHARKKPM---ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQIEERGMLDRKERSSETWR 674 (804)
Q Consensus 599 ~~l~~~~l---~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~-~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~ 674 (804)
..+...++ .++.-+..++....| +.|.+.++++.+...+.... ...||.+.+.+++...... ...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~----------~~~ 354 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTS----------KLG 354 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcccc----------ccC
Confidence 99976543 233345667777665 88999999998876665542 2579999999988654211 112
Q ss_pred hHHHHHHHHHHHHhhCCCCCCcceEEEccCCCC----ccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhC
Q 003669 675 QVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGR----ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 750 (804)
Q Consensus 675 ~va~hEaGhAvv~~~l~~~~~v~kVsI~pr~G~----alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG 750 (804)
.+....+-++|+.++--. +..+.-..| .. +.-.++|+ ..+.+.+| +..|+..+|||.+-.++++
T Consensus 355 ~~t~~~I~~~Va~~~~i~---~~dl~s~~R-~~~i~~~RqiamyL----~r~~t~~s----l~~IG~~FggrdHsTV~~a 422 (450)
T PRK14087 355 ILNVKKIKEVVSEKYGIS---VNAIDGKAR-SKSIVTARHIAMYL----TKEILNHT----LAQIGEEFGGRDHTTVINA 422 (450)
T ss_pred CCCHHHHHHHHHHHcCCC---HHHHhCCCC-CccccHHHHHHHHH----HHHHcCCC----HHHHHHHhCCCChHHHHHH
Confidence 356677778887765432 222222222 11 11334444 23344455 8999999999999999999
Q ss_pred CCCccccccchhhh
Q 003669 751 EGQVRKTLQHPLLF 764 (804)
Q Consensus 751 ~~~istGa~~Dl~~ 764 (804)
.+++......|-..
T Consensus 423 ~~ki~~~~~~d~~~ 436 (450)
T PRK14087 423 ERKIEKMLKKDKQL 436 (450)
T ss_pred HHHHHHHHHhCHHH
Confidence 98888776666443
No 70
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=6.6e-14 Score=159.79 Aligned_cols=269 Identities=16% Similarity=0.151 Sum_probs=169.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~ 528 (804)
.+++|+||+|+|||+|++++++.+ +..+++++...+...+.......-...|.... ..+++++|||++.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 458999999999999999999876 57788888877765543221111111233322 346799999999875431
Q ss_pred CCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc--cccccCCCCCHHHHHHHHHHHHcc
Q 003669 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 529 ~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
. ....|+..++.+...+..+|+++++.|. .+++.|.+ || +..+.+.+|+.++|..|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 2334444444333344556666655554 56788888 77 478899999999999999998877
Q ss_pred CCCCCh-hcHHHHHhhCCCCcHHHHHHHHHHHHHH-HHH-cCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHHH
Q 003669 604 KPMADD-VDYLAVASMTDGMVGAELANIVEVAAIN-MMR-DGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINE 680 (804)
Q Consensus 604 ~~l~~~-~dl~~la~~t~G~sg~DL~~Lv~~A~~~-A~~-~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~hE 680 (804)
.++.-+ ..+..++.... -+.+.|.++++..+.. |.. -....||.+++.+++...... .+...+....
T Consensus 287 ~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~---------~~~~~~t~~~ 356 (445)
T PRK12422 287 LSIRIEETALDFLIEALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEA---------AESVRLTPSK 356 (445)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhc---------ccCCCCCHHH
Confidence 654432 23455666555 3678888888877432 211 123469999999998765432 0111245556
Q ss_pred HHHHHHHhhCCCCCCcceEEEccCCCC----ccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCCCccc
Q 003669 681 AAMAVVAVNFPDLKNIEFVTIAPRAGR----ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQVRK 756 (804)
Q Consensus 681 aGhAvv~~~l~~~~~v~kVsI~pr~G~----alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~~ist 756 (804)
+-.+|+.++--.. ..+.-..| .. +.-.++|+ ..+.+..| +..|+..+| |.+..++++..++..
T Consensus 357 I~~~Va~~~~v~~---~dl~s~~R-~~~i~~~Rqiamyl----~r~~t~~s----~~~IG~~fg-rdHsTV~~a~~ki~~ 423 (445)
T PRK12422 357 IIRAVAQYYGVSP---ESILGRSQ-SREYVLPRQVAMYL----CRQKLSLS----YVKIGDVFS-RDHSTVISSIRAISQ 423 (445)
T ss_pred HHHHHHHHhCCCH---HHHhcCCC-CcccccHHHHHHHH----HHHhcCCC----HHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6677766654322 22211122 11 11334444 23344455 899999997 999999999988887
Q ss_pred cc
Q 003669 757 TL 758 (804)
Q Consensus 757 Ga 758 (804)
..
T Consensus 424 ~~ 425 (445)
T PRK12422 424 KL 425 (445)
T ss_pred HH
Confidence 65
No 71
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=4.9e-14 Score=160.98 Aligned_cols=274 Identities=15% Similarity=0.122 Sum_probs=176.4
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccch-hhHHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||+|+|||+|++++++++ +..+.++++.++...+..... ..+..+.+.. ...+++++|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcCc
Confidence 349999999999999999999975 346788888887766543211 1222232222 235789999999987543
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC---CCccccCCCcccccccCCCCCHHHHHHHHHHHHc
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~---LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
.. ....|+..++.+...+..+||++++.|.. +.+.+.++...+.++.+.+|+.+.|..|++..+.
T Consensus 210 ~~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11 22344444554444555666666666654 5567877333356778999999999999998887
Q ss_pred cCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHHHH
Q 003669 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEA 681 (804)
Q Consensus 603 ~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~hEa 681 (804)
..++. ++..+..++....| +.++|..+++.....+...++ .||.+.+.+++...... . .....+..+++
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~~~~~-~-------~~~~~i~~~~I 347 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKDFIKP-N-------RVKAMDPIDEL 347 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcc-c-------cccCCCCHHHH
Confidence 54443 33336667776654 889999999987766665554 69999999998765432 0 11223667777
Q ss_pred HHHHHHhhCCCCCCcceEEEccCCCC----ccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCCCcccc
Q 003669 682 AMAVVAVNFPDLKNIEFVTIAPRAGR----ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQVRKT 757 (804)
Q Consensus 682 GhAvv~~~l~~~~~v~kVsI~pr~G~----alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~~istG 757 (804)
-.+|+.++-- ....+.-..| .. +.-.++|+ ......+| +..|+..+| |-+-.++++..++...
T Consensus 348 ~~~V~~~~~i---~~~~l~s~~R-~~~i~~aR~iamyl----~r~~~~~s----~~~Ig~~fg-r~hstV~~a~~~i~~~ 414 (440)
T PRK14088 348 IEIVAKVTGV---SREEILSNSR-NVKALLARRIGMYV----AKNYLGSS----LRTIAEKFN-RSHPVVVDSVKKVKDS 414 (440)
T ss_pred HHHHHHHcCC---cHHHHhCCCC-CccccHHHHHHHHH----HHHHhCCC----HHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 7777776532 2233322223 11 11223333 12233344 889999996 9999999999888774
Q ss_pred c-cch
Q 003669 758 L-QHP 761 (804)
Q Consensus 758 a-~~D 761 (804)
. ..|
T Consensus 415 ~~~~d 419 (440)
T PRK14088 415 LLKGN 419 (440)
T ss_pred HHhcC
Confidence 3 444
No 72
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.2e-13 Score=141.13 Aligned_cols=214 Identities=22% Similarity=0.265 Sum_probs=161.1
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhc
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 493 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g 493 (804)
...|++..|..+++..++=.+.+-... -.....+||+||||.||||||+.+|.+++..+-..++..+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 567888899998887776555542211 122345999999999999999999999999887777654322
Q ss_pred cchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc----------------CCCce
Q 003669 494 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNV 557 (804)
Q Consensus 494 ~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~----------------~~~~v 557 (804)
.+.+..++.... ..+|+||||||.+.+. +-..|+..|+.|. +-..+
T Consensus 91 --~gDlaaiLt~Le--~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 --PGDLAAILTNLE--EGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred --hhhHHHHHhcCC--cCCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 233333444432 3479999999999765 4555666666532 12458
Q ss_pred EEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003669 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAI 636 (804)
Q Consensus 558 iVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~DL~~Lv~~A~~ 636 (804)
.+|++|.+...|...|+. ||+....+..++.++..+|+........+.-+ ....++|.++.| ++|-.-.|+++...
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 899999999999999988 99999999999999999999988876655533 336678888876 66767788888888
Q ss_pred HHHHcCCCCcCHHHHHHHHHHHH
Q 003669 637 NMMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 637 ~A~~~~~~~It~edi~~Al~~~~ 659 (804)
.|.-.+...|+.+-...|+....
T Consensus 230 fa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 230 FAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHhcCCcccHHHHHHHHHHhC
Confidence 88888888999999988887653
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=2.9e-13 Score=164.01 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=154.3
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeecc
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 484 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~~ 484 (804)
-.++++.|.++.+.. ++..+.. ....+++|+||||||||++++.||..+ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~---~~~~L~~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELER---TIQVLCR---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHH---HHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 356677776665543 3332211 123458999999999999999999976 667888898
Q ss_pred chhh--hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEee
Q 003669 485 SQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (804)
Q Consensus 485 s~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIat 562 (804)
+.+. ..|.|..+..++.+|+.+....++|+||||+|.+.+... .++|.. ...+.|...+. ++.+.+|++
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~---~~~~~~--~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA---TSGGSM--DASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC---CCCccH--HHHHHHHHHHh----CCCeEEEEe
Confidence 8877 358888888999999999877889999999999976432 122211 12333444443 567899999
Q ss_pred cCCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC----CC-CChhcHHHHHhhCCCCc-----HHHH
Q 003669 563 TNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PM-ADDVDYLAVASMTDGMV-----GAEL 627 (804)
Q Consensus 563 TN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~----~l-~~~~dl~~la~~t~G~s-----g~DL 627 (804)
||..+ ..|++|.| ||. .|.++.|+.+++.+|++...... .+ ..+..+..++..+..|- +...
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 98633 57999999 997 79999999999999999665432 11 13334555665555443 3444
Q ss_pred HHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHHc
Q 003669 628 ANIVEVAAINMMRD----GRTEITTDDLLQAAQIEER 660 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~~ 660 (804)
-.++++|+.....+ ....|+.+|+..++.....
T Consensus 395 i~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 57777776543322 2346999999999887653
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.2e-12 Score=148.77 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=144.3
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce-------eee-
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI- 482 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-------~~i- 482 (804)
......|+++.|.+.++..+..++.. -+++..++|+||+||||||+|+.+|..++... +..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 34567899999988888777666542 13445689999999999999999999875421 000
Q ss_pred ccchhhhh----------hhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhh
Q 003669 483 SASQFVEI----------YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (804)
Q Consensus 483 ~~s~~~~~----------~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~l 548 (804)
+|..+... ....+...++.+.+.+.. ..+.|++|||+|.+... .++.||..|
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--------------A~NALLKtL 145 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--------------SFNALLKTL 145 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH--------------HHHHHHHHh
Confidence 01111000 001122344555555432 33569999999998654 789999999
Q ss_pred hcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHH
Q 003669 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 549 d~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL 627 (804)
+ ....++++|++|+.+..|.+++++ |+. .+.|.+++.++..+.++..+...++. ++..+..++....| +.|+.
T Consensus 146 E--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdA 219 (484)
T PRK14956 146 E--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDM 219 (484)
T ss_pred h--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHH
Confidence 8 455788999899889999999999 653 68888999988888898888765543 33446667777766 67788
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
.+++..+... ....||.+++...+
T Consensus 220 L~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 7888776532 22358888886654
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.6e-12 Score=156.45 Aligned_cols=222 Identities=23% Similarity=0.301 Sum_probs=148.5
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeeccc
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISAS 485 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~~s 485 (804)
.++.+.|-++.+..+.++... ....+++|+||||||||++++.++... +..++.++.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 445566666665444443322 123457999999999999999999754 3445566655
Q ss_pred hhh--hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec
Q 003669 486 QFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (804)
Q Consensus 486 ~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT 563 (804)
.+. ..|.|..+..++.++..+....++|+||||||.+.+.... +++. ....+.|... ...+.+.+|++|
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~--~d~~nlLkp~----L~~g~i~vIgAT 322 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQ--VDAANLIKPL----LSSGKIRVIGST 322 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcH--HHHHHHHHHH----HhCCCeEEEecC
Confidence 554 3467777788888999888878899999999999765321 1221 1122222222 246789999999
Q ss_pred CCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhc-----HHHHHh-----hCCCCcHHHHH
Q 003669 564 NRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-----YLAVAS-----MTDGMVGAELA 628 (804)
Q Consensus 564 N~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~d-----l~~la~-----~t~G~sg~DL~ 628 (804)
|..+ ..|++|.| ||+ .|.++.|+.+++..||+.+........++. +...+. .+..+.+....
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 8764 57999999 997 799999999999999997765433322222 222222 23345566888
Q ss_pred HHHHHHHHHHH----HcCCCCcCHHHHHHHHHHHHcC
Q 003669 629 NIVEVAAINMM----RDGRTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 629 ~Lv~~A~~~A~----~~~~~~It~edi~~Al~~~~~g 661 (804)
.++++|+.... ...+..|+.+|+.+.+.+...-
T Consensus 400 dlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 89999875432 1234468999998888776543
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.44 E-value=1.3e-12 Score=152.58 Aligned_cols=213 Identities=26% Similarity=0.329 Sum_probs=144.4
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeee
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i 482 (804)
....|+++.|....+..+..... ...+..++|+||||||||++|+++...+ +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 45678888888877766654321 0123468999999999999999997642 3578888
Q ss_pred ccchh-------hhhhhccchhhH-------------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 483 SASQF-------VEIYVGVGASRV-------------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 483 ~~s~~-------~~~~~g~~~~~l-------------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
+|... .+..++.....+ ..-.........+++|||||+.+... .++
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------------~q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------------QMN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------------HHH
Confidence 87631 111111000000 00000112234569999999998765 566
Q ss_pred HHHHhhhccc--------------------------CCCce-EEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHH
Q 003669 543 QLLVCLDGFE--------------------------GRGNV-ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 595 (804)
Q Consensus 543 ~LL~~ld~~~--------------------------~~~~v-iVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~ 595 (804)
.|+..|+... -..++ +|.+|||.++.++|++++ |+. .|.|++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 6666654310 01233 445677889999999998 775 78899999999999
Q ss_pred HHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 596 ILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 596 Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
|++..+++..+. ++..+..++.++. +++++.++++.|+..|..+++..|+.+|+..++.
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999998876543 2223455555543 7999999999999988888888999999999875
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.8e-12 Score=148.85 Aligned_cols=204 Identities=20% Similarity=0.246 Sum_probs=139.2
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc--------------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------- 477 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-------------- 477 (804)
..+..|+++.|.+..+..+...+.. -+++.+++|+|||||||||+|+++|..++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3567899999988877666654432 135667899999999999999999998753
Q ss_pred ----------ceeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 478 ----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 478 ----------~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
.++.++.+. ..+...++.+.+.+... .+.+++|||+|.+... .++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------------a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------------AFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH--------------HHHH
Confidence 122222211 11223445555554422 3459999999998543 5778
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~ 622 (804)
|+..++. ..+++++|++|+.+..+++++.+ |+. .+.|.+++.++...+++..+...++. ++..+..++..+.|
T Consensus 137 LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 8888884 34567777777777899999998 664 89999999999999999888655432 33346677777654
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 623 sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
..+++.+.+..+... .+ ..||.+++..++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 555666666554322 22 2499999987764
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.2e-12 Score=152.20 Aligned_cols=207 Identities=17% Similarity=0.214 Sum_probs=142.8
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc------------e
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------F 479 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------~ 479 (804)
.....|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+++.||+.+... .
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3567899999999998877776652 1345668999999999999999999987541 0
Q ss_pred eee-ccchh-----hhhh-h----ccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHH
Q 003669 480 FSI-SASQF-----VEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (804)
Q Consensus 480 ~~i-~~s~~-----~~~~-~----g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~L 544 (804)
+.. +|..+ .+.+ + ..+...++.+.+.+.. ....|++|||+|.+... .+|.|
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~--------------AaNAL 144 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH--------------AFNAM 144 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH--------------HHHHH
Confidence 000 01000 0100 0 1123445666666543 33569999999998654 78999
Q ss_pred HHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCc
Q 003669 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMV 623 (804)
Q Consensus 545 L~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~s 623 (804)
|..|+ ....+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+...++..+ ..+..++..+.| +
T Consensus 145 LKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s 218 (700)
T PRK12323 145 LKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-S 218 (700)
T ss_pred HHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998 455688999999999999999999 55 48899999999999998888766554433 235566767665 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 624 GAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 624 g~DL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
.++..+++..+... +...|+.+++..
T Consensus 219 ~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 219 MRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 77777887766532 223466665544
No 79
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=7.3e-13 Score=147.53 Aligned_cols=268 Identities=18% Similarity=0.208 Sum_probs=184.7
Q ss_pred EEEECCCCCChhHHHHHHhhhh---c--cceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---G--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~--~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~ 528 (804)
++|+||.|+|||+|++++++.. + ..+++++...|...++.....+-..-|..-. .-++++||+|+.+.++.
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-- 191 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-- 191 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--
Confidence 8999999999999999999865 3 3577888877776655432222222333333 44689999999986652
Q ss_pred CCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC---CccccCCCccc--ccccCCCCCHHHHHHHHHHHHcc
Q 003669 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 529 ~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L---dpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
. +...|...++.+...++.+|+.+...|..+ .|.|.+ ||. .++.+.+|+.+.|..|++.....
T Consensus 192 -------~---~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 192 -------R---TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred -------h---HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 1 345555555555566667777777777654 588888 664 56788999999999999998776
Q ss_pred CCCCChhc-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCccccccccchhhhhHHHHHHH
Q 003669 604 KPMADDVD-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAA 682 (804)
Q Consensus 604 ~~l~~~~d-l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~e~~~va~hEaG 682 (804)
.++.-.-+ ...++.+.. -+.++|..+++.....+...++ .||.+.+.+++...... .+ . +.+..+-
T Consensus 260 ~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~---------~~-~-itie~I~ 326 (408)
T COG0593 260 RGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA---------GE-K-ITIEDIQ 326 (408)
T ss_pred cCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc---------cc-c-CCHHHHH
Confidence 66653333 444555443 5789999999988888777666 89999999999877654 11 3 6677777
Q ss_pred HHHHHhhCCCCCCcceEEEccCCCC----ccceEeeccCccccccccCCHHHHHHHHHHHhchHHHHHHHhCCCCccccc
Q 003669 683 MAVVAVNFPDLKNIEFVTIAPRAGR----ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQVRKTL 758 (804)
Q Consensus 683 hAvv~~~l~~~~~v~kVsI~pr~G~----alG~~~~~~p~~~~~~~~~tk~~ll~~I~v~LAGRaAEel~fG~~~istGa 758 (804)
+.|+.++--. ++.+.-..| .. +.-.++|+ ....+..| +..|+-.+| |.+..+++.+.+|+..-
T Consensus 327 ~~Va~~y~v~---~~dl~s~~R-~~~i~~~RqiamyL----~r~lt~~S----lp~IG~~Fg-rdHtTV~~a~~kI~~~~ 393 (408)
T COG0593 327 KIVAEYYNVK---VSDLLSKSR-TRNIVRPRQIAMYL----ARELTNLS----LPEIGKAFG-RDHTTVLHAVRKIEQLI 393 (408)
T ss_pred HHHHHHhCCC---HHHhhcccc-ccccchHHHHHHHH----HHHHccCc----HHHHHHHhC-CCccHHHHHHHHHHHHH
Confidence 7777765432 222222222 11 11334444 23344455 899999999 99999999998888876
Q ss_pred cchhh
Q 003669 759 QHPLL 763 (804)
Q Consensus 759 ~~Dl~ 763 (804)
.+|-.
T Consensus 394 ~~d~~ 398 (408)
T COG0593 394 EEDDS 398 (408)
T ss_pred hcCHH
Confidence 66644
No 80
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.8e-12 Score=142.28 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=142.6
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee--------ec
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--------IS 483 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~--------i~ 483 (804)
..+..|+++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+++|..+...... .+
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3567899999998888777665542 1345668999999999999999999987532110 01
Q ss_pred cchhhh-----hh-h----ccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 484 ASQFVE-----IY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 484 ~s~~~~-----~~-~----g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
|.++.. .+ + ......++.+.+.+... ...|++|||+|.+... .++.|+..++
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--------------a~naLLk~lE 144 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--------------SFNALLKTLE 144 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH--------------HHHHHHHHHh
Confidence 111100 00 0 01223345555554322 2359999999988543 5778888888
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~ 628 (804)
. ...++.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++..++++..+...+.. ++..+..++..+.| +.+++.
T Consensus 145 e--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 145 E--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred c--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567777777778889999987 55 478999999999999999888765542 33446667777765 677777
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
+++..+... +...||.+++.+++.
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 887766532 455799998877653
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.2e-12 Score=148.88 Aligned_cols=203 Identities=19% Similarity=0.257 Sum_probs=143.9
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-------------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------- 478 (804)
.....|+++.|.+..+..+.+.+. +-+++..++|+||+|+||||+|+++|+.++..
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 356789999999988877776654 22445678999999999999999999987542
Q ss_pred -----------eeeeccchhhhhhhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 479 -----------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
++.++.+. ..+...++.+.+.+.. ..+.|++|||+|.+... .++.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--------------A~NA 137 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--------------SFNA 137 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH--------------HHHH
Confidence 12222111 0122345556555432 23569999999988554 6788
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~ 622 (804)
|+..++. ...++.||++|+.+..+++.+++ |+ ..+.|.+++.++..+.++..+...++. ++..+..++..+.|
T Consensus 138 LLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 34567778778888888889887 55 388999999999999999888766554 33346667777655
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 623 sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.|++.+++..+.. . +...||.+++...+
T Consensus 212 dLRdALnLLDQaIa--y--g~g~IT~edV~~lL 240 (702)
T PRK14960 212 SLRDALSLTDQAIA--Y--GQGAVHHQDVKEML 240 (702)
T ss_pred CHHHHHHHHHHHHH--h--cCCCcCHHHHHHHh
Confidence 78888888776653 2 34568888886653
No 82
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=2.9e-12 Score=150.52 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=142.3
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee--eeccc---
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISAS--- 485 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~--~i~~s--- 485 (804)
+.....|+++.|.+.++..+.+.+.. -+++..+||+||+||||||++++|++.++.... ...|+
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 34567899999998888777766541 234566899999999999999999998754211 01111
Q ss_pred ---hhh-----hh-----hhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhh
Q 003669 486 ---QFV-----EI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (804)
Q Consensus 486 ---~~~-----~~-----~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~l 548 (804)
.+. +. ....+...++.+++.+.. ....|++|||+|.+... .++.||..|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--------------A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--------------AFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH--------------HHHHHHHHH
Confidence 110 00 001122345666665543 23469999999998543 678899998
Q ss_pred hcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHH
Q 003669 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 549 d~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL 627 (804)
++ ...++.||++||.+..|.+.+++ |+ ..+.|..++.++..+.|+..+...++. ++..+..++....| +.++.
T Consensus 144 EE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdA 217 (830)
T PRK07003 144 EE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDA 217 (830)
T ss_pred Hh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 45688899999999999999999 55 388999999999999999888765543 33446677777776 56777
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 628 ANIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
.+++..+... +...|+.+++..
T Consensus 218 LsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 218 LSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHh----ccCCcCHHHHHH
Confidence 7777766532 222466665544
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=5e-12 Score=145.93 Aligned_cols=214 Identities=18% Similarity=0.253 Sum_probs=149.1
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee---------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--------- 481 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~--------- 481 (804)
+.....|.++.|.+..+..+.+++.. -+++.+++|+||+||||||+|+++|..++.....
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 34567899999998888777665432 2456779999999999999999999987542110
Q ss_pred ---eccchhhhh------h----hccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHH
Q 003669 482 ---ISASQFVEI------Y----VGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (804)
Q Consensus 482 ---i~~s~~~~~------~----~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~L 544 (804)
-+|..+.+. . ...+...++.+++.+... ...|++|||+|.+... .++.|
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~--------------a~naL 148 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG--------------AFNAL 148 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH--------------HHHHH
Confidence 011111110 0 011234566777776533 2458999999988543 67888
Q ss_pred HHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCCc
Q 003669 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMV 623 (804)
Q Consensus 545 L~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~s 623 (804)
+..++ .....+++|.+|+.++.+++.+.+ |+ ..+.|.+++.++...+++..+...+..- +..+..++..+.| +
T Consensus 149 Lk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s 222 (507)
T PRK06645 149 LKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S 222 (507)
T ss_pred HHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888 345677888778888899999988 55 3788999999999999999988766543 2336667777765 8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 624 g~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
.+++.++++.+...+.. ....||.+++.+.+.
T Consensus 223 lR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 223 ARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 88998999887654421 123588888876543
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.39 E-value=4.4e-12 Score=135.80 Aligned_cols=212 Identities=24% Similarity=0.376 Sum_probs=139.4
Q ss_pred cccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc---eeeeccc
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISAS 485 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~---~~~i~~s 485 (804)
.+......+++..|....+. .+.++..+.... --.+++|+|||||||||||+.|+.....+ |++++..
T Consensus 129 aermRPktL~dyvGQ~hlv~-q~gllrs~ieq~--------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVG-QDGLLRSLIEQN--------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcC-cchHHHHHHHcC--------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 33445567777777655443 244444432211 11358999999999999999999987665 5555543
Q ss_pred hhhhhhhccchhhHHHHHHHHHh-----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 486 QFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 486 ~~~~~~~g~~~~~l~~lf~~a~~-----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
. .....++.+|+.+.+ ....|+|||||+.+... ....||-.++ ++.+++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHVE----NGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------------hhhcccceec----cCceEEE
Confidence 2 233456788888764 23469999999998654 3455554443 6778899
Q ss_pred eec--CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC--------CCC------ChhcHHHHHhhCCCCcH
Q 003669 561 AST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA------DDVDYLAVASMTDGMVG 624 (804)
Q Consensus 561 atT--N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--------~l~------~~~dl~~la~~t~G~sg 624 (804)
++| |+.-.+..+|+++|| ++.+.....+....||.+-.... ++. ++--++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 666 666789999999665 77788888888888888744311 111 22236778888998776
Q ss_pred HHHHHHHHHHHHH-HHHcC---CCCcCHHHHHHHHHHH
Q 003669 625 AELANIVEVAAIN-MMRDG---RTEITTDDLLQAAQIE 658 (804)
Q Consensus 625 ~DL~~Lv~~A~~~-A~~~~---~~~It~edi~~Al~~~ 658 (804)
+-|. .+..++.+ ..+.+ +..++.+|+.+++++-
T Consensus 332 ~aLN-~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 332 AALN-ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHH-HHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 6663 33333222 33333 4579999999988764
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=3.7e-12 Score=133.50 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=116.5
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~ 529 (804)
.++|+||+|||||+|++++|+++ +....++++...... ...+++.+. .+++++|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------SPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------hHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 47999999999999999999876 334455554321110 112333332 35799999999875431
Q ss_pred CCCCcchhHHHHHHHHHhhhcccCCCc-eEEEeecCCCCCCC---ccccCCCcccccccCCCCCHHHHHHHHHHHHccCC
Q 003669 530 KGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (804)
Q Consensus 530 ~~sgge~~~~~l~~LL~~ld~~~~~~~-viVIatTN~~~~Ld---paLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~ 605 (804)
.. ...|+..++.....++ ++|++++..|..++ |.|.++.+++..+.+++|+.++|.+|++..+....
T Consensus 108 ------~~---~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EW---ELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HH---HHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11 1234444444333444 44555666666554 88988666778999999999999999998887555
Q ss_pred CC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 606 l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+. ++.-...++.+..| +.+.+.++++.....+...++ .||...+.+++
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L 227 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQR-KLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh
Confidence 43 33335666766654 677888888765433333344 69999888775
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=1.7e-11 Score=136.70 Aligned_cols=195 Identities=24% Similarity=0.309 Sum_probs=129.0
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhhc---------cceeeeccchhhhh----------hh--ccc--------hhhHHH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI----------YV--GVG--------ASRVRS 501 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el~---------~~~~~i~~s~~~~~----------~~--g~~--------~~~l~~ 501 (804)
+++++|+||||||||++++.++..+. ..+++++|...... .. |.. ...+..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45699999999999999999998653 46777887653321 11 110 011233
Q ss_pred HHHHHHh-cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc-ccCCCceEEEeecCCCC---CCCccccCC
Q 003669 502 LYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPD---ILDPALVRP 576 (804)
Q Consensus 502 lf~~a~~-~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~-~~~~~~viVIatTN~~~---~LdpaLlrp 576 (804)
+++.+.. ..+.|++|||+|.+.... ...+..|+...+. .....++.+|+++|.++ .+++.+.+
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s- 187 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS- 187 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc-
Confidence 4444432 346689999999996321 1145555543211 12336788899998876 57777776
Q ss_pred Cccc-ccccCCCCCHHHHHHHHHHHHccC----CCCChh-c-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 577 GRFD-RKIFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 577 gRfd-~~I~~~~Pd~~eR~~Il~~~l~~~----~l~~~~-d-l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
||. ..|.|++|+.++..+|++.++... .+.+++ + +..++..+.|. .+.+.++|+.|...|..++...||.+
T Consensus 188 -~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~ 265 (365)
T TIGR02928 188 -SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTED 265 (365)
T ss_pred -cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 664 678999999999999999888621 122221 1 22334445554 55566788999988888888899999
Q ss_pred HHHHHHHHHH
Q 003669 650 DLLQAAQIEE 659 (804)
Q Consensus 650 di~~Al~~~~ 659 (804)
++..|+....
T Consensus 266 ~v~~a~~~~~ 275 (365)
T TIGR02928 266 HVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHH
Confidence 9999987763
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=6.1e-12 Score=145.89 Aligned_cols=203 Identities=16% Similarity=0.214 Sum_probs=144.3
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-------------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------- 478 (804)
.....|+++.|.+.++..+.+.+.. -+++..+||+||+||||||+|+++|+.++..
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3567899999999998877776642 2356668999999999999999999987532
Q ss_pred -----------eeeeccchhhhhhhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 479 -----------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
++.++.+. ..+...++.+.+.+.. ..+.|++|||+|.+... .++.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~na 138 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFNA 138 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHHH
Confidence 22222111 1122345666665542 23469999999998654 6788
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~ 622 (804)
|+..|+. ...++.||.+|+.+..+.+.+++ |. ..+.|.+++.++....++..+...++. ++..+..++..+.|
T Consensus 139 LLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999984 44567788777888889888988 54 378899999998888888888766554 33345667777654
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 623 sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+++.+++..+... +...||.+++...+
T Consensus 213 slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 213 SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 788888888876432 34468888876554
No 88
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.37 E-value=9.2e-12 Score=141.57 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=136.8
Q ss_pred ccccccCccCchhHHHH---HHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 413 VDVKFSDVAGLGKIRLE---LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~---l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
....|++..|....+.. +..++.. ..+.+++|+||||||||||+++|+...+.+++.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 34567788887766544 3333321 113368999999999999999999999999988876532
Q ss_pred hhhccchhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec--
Q 003669 490 IYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-- 563 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT-- 563 (804)
+...++.+++.+. .....++||||+|.+... ..+.|+..++ .+.+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~q~~LL~~le----~~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------HHHHHHHHhh----cCcEEEEEeCCC
Confidence 1233455555553 224579999999988543 4556666665 2456666554
Q ss_pred CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccC--CC--CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003669 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 564 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~--~l--~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
|....+++++++ |+ ..+.|++++.++...+++..+... .+ .++..+..++..+.| ..+.+.+++..+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--
Confidence 445588999998 66 588999999999999999877542 11 122335667777744 566676777766533
Q ss_pred HcCCCCcCHHHHHHHHHHH
Q 003669 640 RDGRTEITTDDLLQAAQIE 658 (804)
Q Consensus 640 ~~~~~~It~edi~~Al~~~ 658 (804)
...|+.+++..++...
T Consensus 204 ---~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ---VDSITLELLEEALQKR 219 (413)
T ss_pred ---cCCCCHHHHHHHHhhh
Confidence 4469999999888764
No 89
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.36 E-value=1.3e-11 Score=139.46 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=118.9
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh-hhhccchhhH-HHHHHH----HHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQE----AKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~-~~~g~~~~~l-~~lf~~----a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||||||||++|++||..++.+|+.++++.+.. .|+|.....+ ..+++. +....++|+||||||++...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 45999999999999999999999999999999988764 4777654433 333332 22346789999999999765
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC---------------------------
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 567 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~--------------------------- 567 (804)
....+...+.....+++.||..|++.. ...++++|.|+|...
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~ 268 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAE 268 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccc
Confidence 322111111111236777888877521 112345555555410
Q ss_pred -------------------------CCCccccCCCcccccccCCCCCHHHHHHHHHH----HHc-------cCCCC---C
Q 003669 568 -------------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----HAR-------KKPMA---D 608 (804)
Q Consensus 568 -------------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~----~l~-------~~~l~---~ 608 (804)
.+.|+|+. |+|.++.|.+.+.++..+|+.. .++ ..++. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 269 VKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred cccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 13566665 9999999999999999999973 221 12222 1
Q ss_pred hhcHHHHHhh--CCCCcHHHHHHHHHHHHHHHH
Q 003669 609 DVDYLAVASM--TDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 609 ~~dl~~la~~--t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
+.-+..++.. ..++-.|.|+.+++....-..
T Consensus 347 ~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 347 DEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 1224445543 455667777777776655443
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=9.7e-12 Score=146.51 Aligned_cols=208 Identities=20% Similarity=0.280 Sum_probs=142.2
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee--eccch----
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ---- 486 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~--i~~s~---- 486 (804)
....|+++.|.+.++..+.+.+.. -+++..++|+||+|+||||+++++|+.++...+. ..|+.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 467899999998888777665542 1345668999999999999999999987542110 01110
Q ss_pred --hh-----hhh-hc----cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc
Q 003669 487 --FV-----EIY-VG----VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 487 --~~-----~~~-~g----~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~ 550 (804)
+. +.+ +. .+...++.+.+.+.. ....|++|||+|.+... .++.||..|+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NALLKtLE- 144 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLE- 144 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHHHHHHHH-
Confidence 00 000 00 122345666555432 33569999999998654 7899999999
Q ss_pred ccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHH
Q 003669 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (804)
Q Consensus 551 ~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~ 629 (804)
....++.||.+|+.+..|.+.+++ |+ ..+.|.+++.++....|...+...++. ++..+..++..+.| +.++..+
T Consensus 145 -EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~ 219 (647)
T PRK07994 145 -EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALS 219 (647)
T ss_pred -cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 455678888888888899999998 54 588999999999999999888655443 33345667777665 6777778
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 630 IVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++..+... +...|+.+++...+
T Consensus 220 lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 220 LTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHH
Confidence 87766432 33347777766544
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1e-11 Score=142.38 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=146.0
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-------------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 477 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~------------- 477 (804)
+.....|+++.|.+..+..+.++... -+++.+++|+||+|+||||+|+.+|..+..
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34567899999988888777655442 245678999999999999999999986532
Q ss_pred -----------ceeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 478 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 478 -----------~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
.++.++.++ ..+...++.+.+.+... .+.|++|||+|.+... .++
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--------------A~N 134 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--------------AFN 134 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH--------------HHH
Confidence 222332221 11234567777766543 3459999999988543 788
Q ss_pred HHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCC
Q 003669 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (804)
Q Consensus 543 ~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G 621 (804)
.|+..|+. ....+.+|.+|+.++.+.+.+++ |+. .+.|.+++.++..+.+...+...+.. ++..+..++..+.|
T Consensus 135 aLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999984 45577788788888889999988 543 78999999999999999888766554 33346667777754
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 622 ~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+++.+++..+...+ ...||.+++...+
T Consensus 210 -slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred -CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 8888888888776432 2368888887653
No 92
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=1.4e-11 Score=142.71 Aligned_cols=208 Identities=24% Similarity=0.322 Sum_probs=140.8
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
+......|+++.|..+.+..+.+.+..+... .++++++|+|||||||||+++++|++++..++.++.++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 4456678899999999988888777654311 22567999999999999999999999999999998876432
Q ss_pred hhhccchhhHHHHHHHHHh------cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec
Q 003669 490 IYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~------~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT 563 (804)
. ..+..+...+.. ..+.+|+|||+|.+.... .+..+..|+..++ ..+..+|+++
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iIli~ 137 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPIILTA 137 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEEEec
Confidence 2 112222222211 246699999999885421 0113455665555 2334566778
Q ss_pred CCCCCCCc-cccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003669 564 NRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (804)
Q Consensus 564 N~~~~Ldp-aLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~ 641 (804)
|.+..+++ .+.+ | ...|.|++|+..+...+++..+...++. ++..+..++..+.| |++.+++.... ...
T Consensus 138 n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~--~a~ 208 (482)
T PRK04195 138 NDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA--IAE 208 (482)
T ss_pred cCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH--Hhc
Confidence 88887777 5554 3 3589999999999999999888766543 33446777777654 77777776554 233
Q ss_pred CCCCcCHHHHHHH
Q 003669 642 GRTEITTDDLLQA 654 (804)
Q Consensus 642 ~~~~It~edi~~A 654 (804)
+...++.+++...
T Consensus 209 ~~~~it~~~v~~~ 221 (482)
T PRK04195 209 GYGKLTLEDVKTL 221 (482)
T ss_pred CCCCCcHHHHHHh
Confidence 4456777777543
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.6e-11 Score=144.46 Aligned_cols=208 Identities=17% Similarity=0.197 Sum_probs=142.8
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc------------ee
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------FF 480 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------~~ 480 (804)
....|+++.|.+.++..+.+++.. -+++..+||+||+|+||||+++++|+.+... .+
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 567899999988888777766542 1345668999999999999999999877531 00
Q ss_pred ee-ccchhh--------hh--hhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHH
Q 003669 481 SI-SASQFV--------EI--YVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 545 (804)
Q Consensus 481 ~i-~~s~~~--------~~--~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL 545 (804)
.. +|..+. .. ....+...++.+.+.+... ...|++|||+|.+... .++.|+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaLL 145 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAML 145 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------------HHHHHH
Confidence 00 011110 00 0011223456666665432 2469999999998654 688899
Q ss_pred HhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCCcH
Q 003669 546 VCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVG 624 (804)
Q Consensus 546 ~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~sg 624 (804)
..++. ...++.||.+|+.+..+.+.+++ |. ..+.|..++.++..+.++..+...++.- +..+..++..+.| +.
T Consensus 146 KtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-sl 219 (618)
T PRK14951 146 KTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SM 219 (618)
T ss_pred Hhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88884 45677778777788888888888 54 4889999999999999998887665543 3346677777765 77
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 625 AELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 625 ~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+++.+++..+... +...||.+++...+
T Consensus 220 R~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 220 RDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888887765533 34468877776654
No 94
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=7e-12 Score=141.07 Aligned_cols=186 Identities=25% Similarity=0.311 Sum_probs=120.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh-hhhccchhh-HHHHHHH----HHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASR-VRSLYQE----AKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~-~~~g~~~~~-l~~lf~~----a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||||||||+++++||..++.++..+++..+.. .|+|..... +..+++. +....++|+||||||++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 45999999999999999999999999999999887653 477765332 2333322 12345679999999999875
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC---------------------------
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 567 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~--------------------------- 567 (804)
....+...+-....+++.||+.|++.. +..++++|.|+|...
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~ 276 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAE 276 (413)
T ss_pred hccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccc
Confidence 322111111111236777777776532 134577888887610
Q ss_pred -----------------------CCCccccCCCcccccccCCCCCHHHHHHHHHHH----Hcc-------CCCC---Chh
Q 003669 568 -----------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH----ARK-------KPMA---DDV 610 (804)
Q Consensus 568 -----------------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~----l~~-------~~l~---~~~ 610 (804)
.+.|+|+. |+|.++.|.+.+.++..+|+... ++. .++. ++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~ 354 (413)
T TIGR00382 277 VKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE 354 (413)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH
Confidence 13466765 99999999999999999998753 211 1221 112
Q ss_pred cHHHHHhh--CCCCcHHHHHHHHHHHHHHHH
Q 003669 611 DYLAVASM--TDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 611 dl~~la~~--t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
-+..++.. ...+-.|.|+.+++.......
T Consensus 355 a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 355 ALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 24445543 455667888888777665444
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.4e-11 Score=144.81 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=145.9
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee--eccc---
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS--- 485 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~--i~~s--- 485 (804)
+.....|+++.|.+.++..+.+.+.. -+++.++||+||+|+||||+++++|+.+...... ..|+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34567899999999998777776552 2456779999999999999999999987542110 0111
Q ss_pred --------hhhhh-----hhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhh
Q 003669 486 --------QFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (804)
Q Consensus 486 --------~~~~~-----~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~l 548 (804)
.+.+. ....+...++.+++.+.. ....|++|||+|.+... .++.|+..|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--------------A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--------------AFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH--------------HHHHHHHHH
Confidence 11100 001122345666665432 23469999999877433 678899888
Q ss_pred hcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHH
Q 003669 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 549 d~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL 627 (804)
+. ...++.||++|+.+..+.+.+++ |+ ..+.|..++.++....+...+...++. ++..+..++..+. -+.+++
T Consensus 144 EE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdA 217 (709)
T PRK08691 144 EE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDA 217 (709)
T ss_pred Hh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHH
Confidence 84 44567888888888899999887 65 377888999999999999888876654 2333566776665 578888
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
.+++..+... +...|+.+++...+.
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 8888877643 334688887766543
No 96
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.3e-11 Score=142.91 Aligned_cols=203 Identities=25% Similarity=0.325 Sum_probs=144.3
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-------------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------- 478 (804)
.....|+++.|.+..+..+.+.+.. .+++..+||+||+|+|||++++.+|..+...
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3567899999999888877777653 1345668999999999999999999876421
Q ss_pred -----------eeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 479 -----------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
++.++.+. +.+...++.+.+.+... .+.|++|||+|.+... .++.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--------------a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--------------AFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHH
Confidence 12222110 12234456677665532 3469999999988543 6888
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~ 622 (804)
|+..++. ...++++|.+|+.++.+++.+++ |+. .+.|.+|+.++....++..+...++. ++..+..++..+.|
T Consensus 139 LLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9988884 45677888777888999999988 654 67899999999999999888766654 33345667777665
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 623 sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+++.+++..+... +...||.+++..++
T Consensus 213 ~~R~al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 213 GMRDALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred CHHHHHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 788888888776543 23458887766543
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=3.2e-11 Score=135.96 Aligned_cols=196 Identities=22% Similarity=0.296 Sum_probs=130.4
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhh----------hhcc-------chh-hHHHHHHHHH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------YVGV-------GAS-RVRSLYQEAK 507 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~----------~~g~-------~~~-~l~~lf~~a~ 507 (804)
+.+++|+||||+|||++++.++..+ +..++++++...... ..+. ... .+..+.+.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999876 466888887643221 1110 001 1122233332
Q ss_pred h-cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc-ccc
Q 003669 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (804)
Q Consensus 508 ~-~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf-d~~ 582 (804)
. ..+.||+|||+|.+..... ...+..|+..++... ..++.+|+++|..+ .+++.+.+ || ...
T Consensus 135 ~~~~~~viviDE~d~l~~~~~----------~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG----------NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC----------chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 3457899999999862110 125666666555432 33788888887654 56777665 55 357
Q ss_pred ccCCCCCHHHHHHHHHHHHccCC---CCChhcHHHHHhhCCC--CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 583 IFIPKPGLIGRMEILKVHARKKP---MADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~---l~~~~dl~~la~~t~G--~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
|.|++++.++..+|++.++.... ..++..+..++..+.+ ...+.+..++..|...|..++...|+.+|+..|+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 89999999999999998885421 1122234555555532 234666688899988898888889999999999987
Q ss_pred HH
Q 003669 658 EE 659 (804)
Q Consensus 658 ~~ 659 (804)
..
T Consensus 282 ~~ 283 (394)
T PRK00411 282 SE 283 (394)
T ss_pred HH
Confidence 64
No 98
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.3e-11 Score=145.51 Aligned_cols=207 Identities=17% Similarity=0.208 Sum_probs=139.6
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee-e-eccc----
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-S-ISAS---- 485 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~-~-i~~s---- 485 (804)
.....|+++.|...++..+.+++.. -+++..++|+||+||||||+++++|+.++.... . ..|+
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3567899999999888777766542 134566899999999999999999998854311 0 0011
Q ss_pred --hhhhh-----h-h-c---cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 486 --QFVEI-----Y-V-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 486 --~~~~~-----~-~-g---~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
.+... + + + .+...++.+.+.+.. ....|++|||+|.+... .++.||..|+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------------AqNALLKtLE 144 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------------SFNALLKTLE 144 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------------HHHHHHHHHh
Confidence 11100 0 0 0 112335666555442 23459999999999654 7899999999
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~ 628 (804)
. ...++.||++|+.+..|.+.+++ |+ .++.|.+++.++....|+..+....+. .+..+..++..+.| +.|++.
T Consensus 145 E--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 145 E--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL 218 (944)
T ss_pred c--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 45677777778888889999998 54 478999999999999998888664443 22335667777665 677777
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
+++..+.. . +...++.+.+..
T Consensus 219 nLLdQala--~--~~~~It~~~V~~ 239 (944)
T PRK14949 219 SLTDQAIA--F--GGGQVMLTQVQT 239 (944)
T ss_pred HHHHHHHH--h--cCCcccHHHHHH
Confidence 88877662 2 223466655443
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=1.8e-11 Score=149.94 Aligned_cols=216 Identities=23% Similarity=0.326 Sum_probs=143.4
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeec
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~ 483 (804)
.-.++++.|.+..+ +.++..+... -..+++|+||||||||++++.||..+ +..++.++
T Consensus 183 ~~~ld~~iGr~~ei---~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEI---RQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHH---HHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 44667777766653 4444433211 12357999999999999999999865 24577778
Q ss_pred cchhhh--hhhccchhhHHHHHHHHHh-cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 484 ASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 484 ~s~~~~--~~~g~~~~~l~~lf~~a~~-~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
++.+.. .|.|..+..++.+++.+.. ..++|+||||||.+.+.++. .++.. .-+.|...+ .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d---~~n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGD---AANLLKPAL----ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---ccccc---HHHHhhHHh----hCCCeEEE
Confidence 777653 4777788889999998865 45789999999999765321 11111 223333333 36788999
Q ss_pred eecCCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCC----C-CChhcHHHHHhhCCCCc-----HH
Q 003669 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP----M-ADDVDYLAVASMTDGMV-----GA 625 (804)
Q Consensus 561 atTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~----l-~~~~dl~~la~~t~G~s-----g~ 625 (804)
+||+..+ .+||+|.| ||. .|.|+.|+.+++..||+....... + ..+..+..++..+.+|. +.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9997643 58999999 996 899999999999999865554321 1 13344666666666553 34
Q ss_pred HHHHHHHHHHHHHHHc-CCCCcCHHHHHHH
Q 003669 626 ELANIVEVAAINMMRD-GRTEITTDDLLQA 654 (804)
Q Consensus 626 DL~~Lv~~A~~~A~~~-~~~~It~edi~~A 654 (804)
..-.++++|+...... ....+..+++...
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 5567888886654433 3334444555433
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.31 E-value=2.1e-11 Score=126.69 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=117.5
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
+..++|+||+|||||+|+++++..+ +.+++++++..+.... ..+++... .+.+++|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-
Confidence 4569999999999999999999876 4577888887765321 12333322 23589999999875421
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCC---ccccCCCcc--cccccCCCCCHHHHHHHHHHHHc
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD---PALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~Ld---paLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
. ....+...++.....+..+|+.++..+..++ +.+.+ |+ ...|.+++|+.+++..+++.++.
T Consensus 107 --------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1233333333322223344444444443332 66766 55 57899999999999999998776
Q ss_pred cCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 603 ~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
...+. ++.-+..++.. -+-+.+++.++++.+...+...+ ..||.+.+.+.+
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 54433 23335667775 56689999999999876555544 469998887764
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.5e-11 Score=138.50 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=139.6
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc------------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------ 478 (804)
+.....|+++.|.+.++..+.+++.. -+++..++|+||+||||||+++++|..+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34567899999999888777766653 1345568999999999999999999977421
Q ss_pred -----------eeeeccchhhhhhhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 479 -----------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
+..++.+. ..+...++.+.+.+.. ..+.+++|||+|.+... .++.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~--------------a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS--------------AFNA 135 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHH--------------HHHH
Confidence 11222110 1122334555444433 23569999999876432 6788
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~ 622 (804)
|+..++. ...++++|.+||.+..+.+.+.+ |+. .+.|.+|+.++....++..+...++. ++..+..++..+.|
T Consensus 136 LLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 44567778788888899999988 544 78999999999999999988776654 23335666776654
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 623 sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
..+++.++++.+.. . ...||.+++..++
T Consensus 210 dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 56666676666532 1 2368888876653
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=3.5e-11 Score=140.37 Aligned_cols=208 Identities=18% Similarity=0.213 Sum_probs=141.1
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee--eccch----
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ---- 486 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~--i~~s~---- 486 (804)
....|+++.|.+.++..+.+.+.. -+++..++|+||+|+||||+|+++|..+...... -.|+.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456899999998888777766542 2345668999999999999999999987542110 01111
Q ss_pred -------hhhhh-h----ccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc
Q 003669 487 -------FVEIY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 487 -------~~~~~-~----g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~ 550 (804)
+.+.+ + ......++.+.+.+... .+.|++|||+|.+... .++.|+..++.
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--------------a~naLLK~LEe 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--------------AFNAMLKTLEE 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH--------------HHHHHHHHHhC
Confidence 00000 0 11223456666665432 2459999999987543 67889999984
Q ss_pred ccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCCcHHHHHH
Q 003669 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELAN 629 (804)
Q Consensus 551 ~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~sg~DL~~ 629 (804)
...++++|.+|+.+..+.+.+++ |. ..+.|..++.++..+.+...+...++.. +..+..++..+. -+.+++.+
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~ 219 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALS 219 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHH
Confidence 45677788777778888888887 54 4899999999999988888876655442 233556666655 46788888
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 630 IVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++..+... +...|+.+++...+
T Consensus 220 lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 220 LLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHH
Confidence 88777543 34568887776554
No 103
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.29 E-value=7.3e-10 Score=131.66 Aligned_cols=214 Identities=26% Similarity=0.315 Sum_probs=129.8
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeec
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~ 483 (804)
...|+++.|....+..+...+. . ..+..++|+||||||||||++++.+.. +.+++.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 5577888887776655432221 1 123459999999999999999998755 34678888
Q ss_pred cchhh-------hhhhccchhh----HHHHHHH----------HHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 484 ASQFV-------EIYVGVGASR----VRSLYQE----------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 484 ~s~~~-------~~~~g~~~~~----l~~lf~~----------a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
+..+. ...++..... ....+.. ......+++||||++.+... ...
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~ 283 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQN 283 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------HHH
Confidence 76531 1112211110 0000100 11223469999999877543 344
Q ss_pred HHHHhhhcc--------------------------cCCCceEEEe-ecCCCCCCCccccCCCcccccccCCCCCHHHHHH
Q 003669 543 QLLVCLDGF--------------------------EGRGNVITIA-STNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 595 (804)
Q Consensus 543 ~LL~~ld~~--------------------------~~~~~viVIa-tTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~ 595 (804)
.|+..++.. ....++++|+ ||+.++.++++|++ ||. .+.|++++.+++..
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 444444321 0122355554 55778889999988 887 67889999999999
Q ss_pred HHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc--------CCCCcCHHHHHHHHHHH
Q 003669 596 ILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--------GRTEITTDDLLQAAQIE 658 (804)
Q Consensus 596 Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~--------~~~~It~edi~~Al~~~ 658 (804)
|++..+...... ++.-+..++..+. .++...+++..+...+..+ +...|+.+|+.+++..-
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 999988765432 2223445555543 4566666666554443211 23369999999987654
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.28 E-value=5.7e-11 Score=131.88 Aligned_cols=204 Identities=24% Similarity=0.309 Sum_probs=139.7
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc------------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------ 478 (804)
+.....|+++.|.++.+..+.+.+.. -.++..++|+||+|+|||+++++++..+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 33567888999999888777765542 1345668999999999999999999876422
Q ss_pred ------------eeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 479 ------------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
++.++.+. ......++.+++.+... .+.+++|||+|.+... .++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------------~~~ 135 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------------AFN 135 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH--------------HHH
Confidence 11111110 01223456677665543 2358999999887543 577
Q ss_pred HHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCC
Q 003669 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (804)
Q Consensus 543 ~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G 621 (804)
.|+..++. ...++++|.+|+.++.+.+.+.+ |+. .+.|++|+..+..+++..++...+.. ++..+..++..+.|
T Consensus 136 ~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 136 ALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 34567777778888888889888 664 78999999999999999988776543 23345566766654
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 622 ~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+.+.+.++.+...+ ...||.+++.+++
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 6666767666655432 2348988887664
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=99.27 E-value=1e-10 Score=128.58 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=129.7
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhc-----cceeeecc
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 484 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~-----~~~~~i~~ 484 (804)
++.....|+++.|....+..+..++.. -.. ++++|+|||||||||+++++|+++. ..++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 445677888888888877776665432 012 2489999999999999999999872 22444444
Q ss_pred chhhhhhhccchhhHHHHHHHHHh-------cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCce
Q 003669 485 SQFVEIYVGVGASRVRSLYQEAKD-------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNV 557 (804)
Q Consensus 485 s~~~~~~~g~~~~~l~~lf~~a~~-------~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~v 557 (804)
++... ...++........ ..+.+++|||+|.+... ..+.|+..++.. ...+
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~--~~~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIY--SNTT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcc--cCCc
Confidence 43211 1122222222111 23569999999998544 456666666633 2345
Q ss_pred EEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003669 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAI 636 (804)
Q Consensus 558 iVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~ 636 (804)
.+|.++|....+.+++++ |. ..+.|++|+.++....++..+...++. ++..+..++....| ..+.+.+.++ .
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq---~ 203 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ---A 203 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---H
Confidence 567778888888899988 54 389999999999999999888765543 33346667766654 3444444444 2
Q ss_pred HHHHcCCCCcCHHHHHHH
Q 003669 637 NMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 637 ~A~~~~~~~It~edi~~A 654 (804)
.. .+...||.+++...
T Consensus 204 ~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 204 TH--SGFGFVNQENVFKV 219 (319)
T ss_pred HH--hcCCCCCHHHHHHH
Confidence 12 23446888887654
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=5e-11 Score=125.47 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=113.2
Q ss_pred cEEEECCCCCChhHHHHHHhhhhc---cceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~---~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~ 529 (804)
.++|+||+|||||+|+++++..+. ....+++....... ...+.+.... .++++|||++.+.++.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~--- 113 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE--- 113 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---
Confidence 589999999999999999998654 33445554442211 1122222222 3589999999875431
Q ss_pred CCCCcchhHHHHHHHHHhhhcccCCCc-eEEEeecCCCCC---CCccccCCCcc--cccccCCCCCHHHHHHHHHHHHcc
Q 003669 530 KGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 530 ~~sgge~~~~~l~~LL~~ld~~~~~~~-viVIatTN~~~~---LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
.....+ +..++.....++ .+++++++.|.. +.|.|++ |+ ..++.+.+|+.+++.++++..+..
T Consensus 114 ------~~~~~l---f~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 114 ------LWEMAI---FDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred ------HHHHHH---HHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 112222 233333223344 355666666655 5789988 66 478899999999999999987766
Q ss_pred CCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 604 ~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
.++. ++.-...++.+..| +.+.+.++++.....+.. .+..||.+.+.+++
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 5443 33335666766654 778888888875433333 33459998888775
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=3.7e-11 Score=135.18 Aligned_cols=190 Identities=18% Similarity=0.257 Sum_probs=127.3
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee-eeccc------hhh
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-SISAS------QFV 488 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~-~i~~s------~~~ 488 (804)
.|+++.|.+.++..+.+++..-.. .+...+..++.+++|+||+|+|||++++++|..+..... ...|+ .+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 477888999999888888775221 233455667888999999999999999999986633210 00111 000
Q ss_pred hh------h-----hccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccC
Q 003669 489 EI------Y-----VGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG 553 (804)
Q Consensus 489 ~~------~-----~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~ 553 (804)
.. + .......++.+++.+... .+.|++|||+|.+... ..+.|+..|++ .
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------------aanaLLk~LEe--p 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------------AANALLKAVEE--P 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------------HHHHHHHHhhc--C
Confidence 00 0 011223467777776543 2459999999999654 56888888884 3
Q ss_pred CCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHHHHH
Q 003669 554 RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANI 630 (804)
Q Consensus 554 ~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL~~L 630 (804)
..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+.... ... ......++..+.|..++.+.-+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 4455666556668999999998 54 389999999998887776332 232 3345678888888877665443
No 108
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.26 E-value=1.3e-10 Score=127.85 Aligned_cols=209 Identities=20% Similarity=0.254 Sum_probs=130.2
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhc-----cceeeeccc
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISAS 485 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~-----~~~~~i~~s 485 (804)
+.....|+++.|....+..+..++.. ...++++|+||+|||||+++++++.++. .+++.++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 34566788888888877666665531 1112589999999999999999999773 346777776
Q ss_pred hhhhhh---h----------cc-------chhhHHHHHHHHHh-----cCCceeehhHHHHhhhhcCCCCCCCcchhHHH
Q 003669 486 QFVEIY---V----------GV-------GASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDAT 540 (804)
Q Consensus 486 ~~~~~~---~----------g~-------~~~~l~~lf~~a~~-----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~ 540 (804)
++.... . +. ....++.+...... ..+.+++|||++.+... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--------------~ 141 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--------------A 141 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------H
Confidence 653211 0 10 01112222222222 22458999999887432 3
Q ss_pred HHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhC
Q 003669 541 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMT 619 (804)
Q Consensus 541 l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t 619 (804)
.+.|...++... .++.+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+...++. ++..+..++..+
T Consensus 142 ~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 445555555432 234455556556677778877 54 378899999999999999888766544 344567777776
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 620 DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 620 ~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
.| +.+++.+.+. ..+ . +...||.+++.+++.
T Consensus 217 ~g-dlr~l~~~l~---~~~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 217 GG-DLRKAILTLQ---TAA-L-AAGEITMEAAYEALG 247 (337)
T ss_pred CC-CHHHHHHHHH---HHH-H-cCCCCCHHHHHHHhC
Confidence 43 4444444333 323 2 223699999987653
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=9.4e-11 Score=138.39 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=121.2
Q ss_pred EEEECCCCCChhHHHHHHhhhh----------ccceeeeccchhhhhh---------h-cc-------chhhHHHHHHHH
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIY---------V-GV-------GASRVRSLYQEA 506 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~~s~~~~~~---------~-g~-------~~~~l~~lf~~a 506 (804)
++|+|+||||||++++.+..++ ...+++|+|..+...+ + +. ....+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 1457888885533221 0 11 112234455544
Q ss_pred H--hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC---CCCCCccccCCCcccc
Q 003669 507 K--DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR---PDILDPALVRPGRFDR 581 (804)
Q Consensus 507 ~--~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~---~~~LdpaLlrpgRfd~ 581 (804)
. .....||+|||||.+.... ..+|..|+.... .....++||+.+|. ++.++|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 2235689999999986531 224444444332 23457889999986 4567788877 5543
Q ss_pred -cccCCCCCHHHHHHHHHHHHccCC-CCChhcHHHHHhhCCC--CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 582 -KIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 582 -~I~~~~Pd~~eR~~Il~~~l~~~~-l~~~~dl~~la~~t~G--~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
.|.|++|+.+++.+||+..+.... ..++.-+..+|..... -..|....+|+.|+.. .+...|+.+|+..|+..
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi---kegskVT~eHVrkAlee 1005 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQ 1005 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHH
Confidence 588899999999999999987532 2223234555553321 1334444666666654 34457999999999877
Q ss_pred HHcC
Q 003669 658 EERG 661 (804)
Q Consensus 658 ~~~g 661 (804)
+...
T Consensus 1006 iE~s 1009 (1164)
T PTZ00112 1006 LFDS 1009 (1164)
T ss_pred HHhh
Confidence 6543
No 110
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=5.7e-11 Score=138.10 Aligned_cols=207 Identities=18% Similarity=0.230 Sum_probs=137.2
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce-------eee-cc
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-SA 484 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-------~~i-~~ 484 (804)
....|+++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+.+|..+.... +.. +|
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 567899999998888776665542 13455689999999999999999999764311 000 00
Q ss_pred c-----hhhhhh-----hccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc
Q 003669 485 S-----QFVEIY-----VGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 485 s-----~~~~~~-----~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~ 550 (804)
. .+.+.+ ...+...++.+.+.+.. ....|++|||+|.+... .++.|+..|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--------------a~naLLK~LEe 145 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--------------SFNALLKTLEE 145 (546)
T ss_pred HHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH--------------HHHHHHHHHhc
Confidence 0 000000 00112234555555442 23469999999988554 78899999984
Q ss_pred ccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHH
Q 003669 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (804)
Q Consensus 551 ~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~ 629 (804)
....+++|++|+.+..+.+.+++ |. ..+.|.+++.++....+...+...++. ++..+..++..+. -+.+++.+
T Consensus 146 --pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~aln 219 (546)
T PRK14957 146 --PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDALS 219 (546)
T ss_pred --CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHH
Confidence 44567777677778888888888 54 489999999999988888877765543 3334556666664 57778878
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 630 IVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
++..+.... + ..|+.+++..+
T Consensus 220 lLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 220 LLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHhc---c-CCCCHHHHHHH
Confidence 887765332 2 45777777654
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=5.4e-11 Score=144.32 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=139.7
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee-------ee-
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI- 482 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~-------~i- 482 (804)
+.....|+++.|.+.++..+.+.+.. -+++..+||+||+||||||++++||..+..... .+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 44667899999988888776665542 235566899999999999999999998853211 10
Q ss_pred ccchhh-------hh--hhc---cchhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHH
Q 003669 483 SASQFV-------EI--YVG---VGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (804)
Q Consensus 483 ~~s~~~-------~~--~~g---~~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~ 546 (804)
+|..+. +. +-+ .+...++.+.+.+. ...+.|+||||+|.+... .++.||.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--------------a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--------------GFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH--------------HHHHHHH
Confidence 010000 00 000 11233444444332 234569999999999654 7889999
Q ss_pred hhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCCcHH
Q 003669 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGA 625 (804)
Q Consensus 547 ~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~sg~ 625 (804)
.|++ ...+++||++|+.++.|.+.|++ |. .+|.|..++.++..++|...+...++.. +..+..++....| +.+
T Consensus 143 ~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 44577888788888889899988 43 3889999999999999998887665542 3335556666655 777
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 626 ELANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 626 DL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
++.++++..... .+...||.+++...
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 887877765422 23445777766543
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=1.6e-10 Score=120.73 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=114.9
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
..+++|+||+|||||+|+++++... +.++..+++..+... +.. ...+++++|||++.+...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~-- 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA-- 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch--
Confidence 3469999999999999999999865 567777777664321 111 123568999999986432
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC-CC--CCCccccCCCcc--cccccCCCCCHHHHHHHHHHHHc
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-PD--ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~-~~--~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
....|+..++.....+..++|.+++. +. .+.+.|.+ || ...+.+++|+..++..++.....
T Consensus 106 ------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 106 ------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred ------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 23344444444333444334444433 21 34566666 66 56899999999999999987766
Q ss_pred cCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 603 ~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
...+. ++.-+..++.. .+-+.+++.++++.-...+...+ ..||...+.+++.
T Consensus 172 ~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 172 ERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 55443 22335666664 44588899999988655454444 5799999888764
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=7.6e-11 Score=137.96 Aligned_cols=204 Identities=21% Similarity=0.264 Sum_probs=139.0
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc------------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------ 478 (804)
+.....|+++.|...++..+.+++.. -+++..+||+||+|+||||+|+++|+.+...
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34567899999988887777766542 1345679999999999999999999987532
Q ss_pred ------------eeeeccchhhhhhhccchhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 479 ------------~~~i~~s~~~~~~~g~~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
++.++... ......++.+.+.+. .....|++|||+|.+... .++
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~--------------a~n 137 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE--------------AFN 137 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH--------------HHH
Confidence 11221110 011123344433332 223469999999998544 678
Q ss_pred HHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCC
Q 003669 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (804)
Q Consensus 543 ~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G 621 (804)
.|+..|+. ...++++|++||.+..+.+.+++ |+. +|.|.+++.++...+|+..+....+. ++..+..++..+.|
T Consensus 138 aLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88988884 34578888888888888888888 654 78999999999999998877765542 33346667776654
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 622 ~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+++.++++.+. ..+...||.+++..++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 5566666666542 2344478988877665
No 114
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=6.9e-11 Score=124.28 Aligned_cols=179 Identities=21% Similarity=0.251 Sum_probs=114.5
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~ 529 (804)
.++|+||+|||||+|+.+++..+ +....++++.++... +...++... ...+++|||++.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~--- 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQR--- 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCCh---
Confidence 38999999999999999998765 445566665543321 223444332 34699999998775331
Q ss_pred CCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC---CccccCCCcc--cccccCCCCCHHHHHHHHHHHHccC
Q 003669 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARKK 604 (804)
Q Consensus 530 ~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L---dpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~~ 604 (804)
. ....++..++.....+.-+|+.+...|..+ +|.|.+ || ..++.+++|+.+++.+|++.++...
T Consensus 110 ------~---~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 ------E---DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ------H---HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1 122233333333333333445555566644 788988 76 5678999999999999999877654
Q ss_pred CCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 605 PMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 605 ~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
.+. ++..+..++..+.| +.+.+.++++.....+...+ ..||.+.+.+.+..
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 443 33346677777663 45555555665554444444 46999999887754
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.1e-10 Score=134.94 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=139.8
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-------eee-ec
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFS-IS 483 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~-------~~~-i~ 483 (804)
.....|.++.|.+..+..+.+.+.. -+++..++|+||+|+||||+++.+|..+... .+. .+
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 3566888999988888777666642 1345568999999999999999999987521 111 11
Q ss_pred cchh-----hhhh-----hccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 484 ASQF-----VEIY-----VGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 484 ~s~~-----~~~~-----~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
|..+ .+.+ ...+...++.+.+.+... .+.|++|||+|.+... .++.|+..++
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~LE 144 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--------------AFNALLKTLE 144 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH--------------HHHHHHHHHh
Confidence 1111 0110 001123345565555433 3469999999987543 5788888888
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~sg~DL~ 628 (804)
. ....+++|.+|+.++.+.+++.+ |+. .+.|++|+.++....+..++...++.. +..+..++..+.| +.+++.
T Consensus 145 e--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al 218 (486)
T PRK14953 145 E--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAA 218 (486)
T ss_pred c--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34456666667777888888888 554 789999999999999999888766543 2335566666654 677777
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++++.+... +...||.+++..++
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHh
Confidence 888776533 23468888887754
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1e-10 Score=138.80 Aligned_cols=210 Identities=21% Similarity=0.293 Sum_probs=144.2
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee---eccchh
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQF 487 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~---i~~s~~ 487 (804)
...+..|.++.|.+.++..+.+.+.. -+++..+||+||+|+|||++|+++|..+...... -.|+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34677899999999888777776652 1355668999999999999999999877442110 011111
Q ss_pred h-------hhhhc-----cchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc
Q 003669 488 V-------EIYVG-----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 551 (804)
Q Consensus 488 ~-------~~~~g-----~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~ 551 (804)
. ..+.+ .+...++.+.+.+... .+.|++|||+|.+... .++.|+..|+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~--------------A~NALLKtLEE- 144 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS--------------AFNALLKTLEE- 144 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------------HHHHHHHHhhc-
Confidence 0 00000 1233467777766543 3469999999988543 68899999984
Q ss_pred cCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHHHHHHH
Q 003669 552 EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANI 630 (804)
Q Consensus 552 ~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~DL~~L 630 (804)
....+++|.+|+.++.|.+.+++ |+. .+.|.+|+.++....+...+...++..+ ..+..++..+.| +.+++..+
T Consensus 145 -PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45677888888888999999988 654 8899999999999999887776554432 235566666654 66777777
Q ss_pred HHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 631 VEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 631 v~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+..+... +...|+.+++...+
T Consensus 220 Lekl~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHHHHHh----ccCCCCHHHHHHHH
Confidence 7765432 22348888886654
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=99.24 E-value=1.1e-10 Score=122.87 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=120.2
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~ 528 (804)
..++|+||+|+|||+|++++++++ +...++++..++.... ..+.+.... .++++|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 458999999999999999998754 4567778777665421 123333332 3589999999774331
Q ss_pred CCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc--cccccCCCCCHHHHHHHHHHHHcc
Q 003669 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 529 ~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
. ....|+..++.+...+..++++++..|. ...|.|++ || ..++.+.+|+.+++..+++..+..
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 2334555555555556667777776554 33688888 76 567788999999999999966665
Q ss_pred CCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 604 ~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
.++. ++.-.+.++.+.. -+.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 5443 2333555666555 4788888888876544443 33468988887765
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5.7e-11 Score=139.24 Aligned_cols=211 Identities=19% Similarity=0.203 Sum_probs=140.5
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce-------eee-
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI- 482 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-------~~i- 482 (804)
+.....|+++.|.+.++..+.+.+.. -+++..+||+||+||||||+++++|+.+.... +..
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34567899999988888777766542 24566689999999999999999999775321 100
Q ss_pred ccchhh-------hh-hh-c---cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHH
Q 003669 483 SASQFV-------EI-YV-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (804)
Q Consensus 483 ~~s~~~-------~~-~~-g---~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~ 546 (804)
+|-.+. +. .+ + .+...++.+.+.+.. ....|++|||+|.+... .++.||.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK 140 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA--------------GFNALLK 140 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--------------HHHHHHH
Confidence 010000 00 00 0 122334555444432 23459999999888544 7889999
Q ss_pred hhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHH
Q 003669 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGA 625 (804)
Q Consensus 547 ~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~ 625 (804)
.|+ ....++++|.+|+.+..+.+.+++ |. ..+.|..++.++..+.+...+...+..-+ ..+..++.. .|-+.+
T Consensus 141 ~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR 214 (584)
T PRK14952 141 IVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPR 214 (584)
T ss_pred HHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHH
Confidence 998 455678888888888899999988 53 48899999999999999888877654322 234445444 455788
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 626 ELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 626 DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++.++++...... +...||.+++...+
T Consensus 215 ~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 215 DTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 8888888765322 24457777776543
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1e-10 Score=138.01 Aligned_cols=207 Identities=21% Similarity=0.285 Sum_probs=142.0
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee-------ee-cc
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI-SA 484 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~-------~i-~~ 484 (804)
....|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+++++|+.+...-. .. +|
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 567899999999888777776642 145667899999999999999999998753211 00 01
Q ss_pred chh-----hhh--hh---ccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc
Q 003669 485 SQF-----VEI--YV---GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 485 s~~-----~~~--~~---g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~ 550 (804)
.++ .+. +- ..+...++.+.+.+... .+.|++|||+|.+... .++.|+..|+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--------------a~naLLk~LE- 144 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--------------AFNALLKTLE- 144 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH--------------HHHHHHHHHH-
Confidence 000 000 00 11223456666665433 2458999999988654 6889999998
Q ss_pred ccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHH
Q 003669 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (804)
Q Consensus 551 ~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~ 629 (804)
....+++||.+|+.++.|.+.+++ |.. .+.|..++.++....+...+...++. ++..+..++..+.| +.+++.+
T Consensus 145 -epp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~ 219 (576)
T PRK14965 145 -EPPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLS 219 (576)
T ss_pred -cCCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 445678888888888999999988 543 88899999999888888877766554 33346667777765 6677777
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 630 IVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
++..+.... + ..||.+++...
T Consensus 220 ~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 220 TLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHhc---c-CCCCHHHHHHH
Confidence 777654332 2 24777776544
No 120
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.24 E-value=2.8e-10 Score=139.74 Aligned_cols=161 Identities=26% Similarity=0.392 Sum_probs=116.8
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeeccc
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISAS 485 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~~s 485 (804)
.++.+.|-++.+..+.++.. .+.+.+++|+||||||||++++.+|..+ +.+++.++++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 45667776666644444322 1234568999999999999999999876 3678889988
Q ss_pred hhh--hhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec
Q 003669 486 QFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (804)
Q Consensus 486 ~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT 563 (804)
.+. ..|.|+.+.+++.+++.+....++|+||||||.+.+.... .|+. ...+.|...+ .++.+.+|++|
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~---~~a~lLkp~l----~rg~l~~IgaT 314 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAI---DAANILKPAL----ARGELQCIGAT 314 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCcc---cHHHHhHHHH----hCCCcEEEEeC
Confidence 776 3577888888999999998878889999999999764321 1111 1222233222 35678999998
Q ss_pred CCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHH
Q 003669 564 NRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 601 (804)
Q Consensus 564 N~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l 601 (804)
+..+ ..|++|.+ ||. .|.++.|+.++...|++...
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 8654 47899999 997 57899999999999987543
No 121
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.23 E-value=1.4e-10 Score=139.28 Aligned_cols=207 Identities=24% Similarity=0.296 Sum_probs=130.9
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~ 492 (804)
....|++..|....+....-+...+.. .-..+++|+||||||||||++++++..+.+++.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~----- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA----- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----
Confidence 346677887776665432222222211 112358999999999999999999999888887776421
Q ss_pred ccchhhHHHHHHHHH-----hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec--CC
Q 003669 493 GVGASRVRSLYQEAK-----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NR 565 (804)
Q Consensus 493 g~~~~~l~~lf~~a~-----~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT--N~ 565 (804)
....++..+..+. .....++||||+|.+... ..+.|+..++ .+.+++|++| |.
T Consensus 89 --~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 89 --GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred --hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCCh
Confidence 1112233333321 123568999999988543 3455665554 3456777655 44
Q ss_pred CCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHcc-------CCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003669 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-------KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (804)
Q Consensus 566 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~-------~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~ 637 (804)
...+++++++ |. ..+.|++++.+++..+++..+.. ..+. ++..+..++....| ..|.+.++++.+...
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVES 224 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 4578899998 43 37899999999999999988762 1221 23336667777644 678888888877643
Q ss_pred HHHcC--CCCcCHHHHHHHHHH
Q 003669 638 MMRDG--RTEITTDDLLQAAQI 657 (804)
Q Consensus 638 A~~~~--~~~It~edi~~Al~~ 657 (804)
+...+ ...||.+++.+++..
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred cccCCCCceeccHHHHHHHHHH
Confidence 32221 123777777666654
No 122
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=4.8e-11 Score=146.47 Aligned_cols=165 Identities=24% Similarity=0.406 Sum_probs=119.1
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeec
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~ 483 (804)
.-.++++.|-+.. ++.++..+... -..+++|+||||||||++++.||..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3456677776664 34444433211 12348999999999999999999977 66788888
Q ss_pred cchhh--hhhhccchhhHHHHHHHHHh-cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 484 ASQFV--EIYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 484 ~s~~~--~~~~g~~~~~l~~lf~~a~~-~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
++.+. ..|.|..+..++.+|+.+.. ..++|+||||+|.+.+.... +|+.. ..+.|... ..++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d---~~~~lkp~----l~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMD---AGNMLKPA----LARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchh---HHHHhcch----hhcCCCeEE
Confidence 88766 34778888888999988654 56789999999999765321 12111 22333322 246789999
Q ss_pred eecCCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHcc
Q 003669 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 561 atTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (804)
++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.....
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9998876 48999999 998 6889999999999999876543
No 123
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=9.3e-11 Score=136.62 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=139.8
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-------------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 477 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~------------- 477 (804)
...+..|+++.|.+..+..+.+.+.. -+++.+++|+||+|+|||++|+++|..+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999988888666655431 244567999999999999999999997632
Q ss_pred -----------ceeeeccchhhhhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHH
Q 003669 478 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (804)
Q Consensus 478 -----------~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~ 542 (804)
.++.++.+. ..+.+.++.+.+.+... ...|++|||+|.+... ..+
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--------------A~N 137 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------AWN 137 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH--------------HHH
Confidence 111111110 01223456666555433 2358999999988543 578
Q ss_pred HHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCC
Q 003669 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (804)
Q Consensus 543 ~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G 621 (804)
.|+..|+. ...++++|++|+.+..+.+.+++ |+. .+.|.+|+..+....+...+...+.. ++..+..++..+.|
T Consensus 138 aLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 138 ALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888883 45577888888888999999988 554 89999999999999999887665532 33346667777665
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 622 ~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+++.++++..... .+. .|+.+++...+
T Consensus 213 -dlR~AlnlLekL~~y---~~~-~It~e~V~ell 241 (605)
T PRK05896 213 -SLRDGLSILDQLSTF---KNS-EIDIEDINKTF 241 (605)
T ss_pred -cHHHHHHHHHHHHhh---cCC-CCCHHHHHHHh
Confidence 677777777764432 232 38888877653
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.22 E-value=7.8e-11 Score=128.96 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=108.2
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~ 489 (804)
++.....|+++.|.+..+..+...+.. -..|..++|+||+|+|||+++++++...+.+++.++++. ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 455667889999988887766666541 123455777999999999999999999988888888876 11
Q ss_pred hhhccchhhHHHHHHHHH-hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC
Q 003669 490 IYVGVGASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~-~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
.......+..+..... ...+.+++|||+|.+.... ....|...++.. ..++.+|++||.+..
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~-------------~~~~L~~~le~~--~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD-------------AQRHLRSFMEAY--SKNCSFIITANNKNG 143 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH-------------HHHHHHHHHHhc--CCCceEEEEcCChhh
Confidence 1111111111111111 1346799999998873220 233344445532 356778889999999
Q ss_pred CCccccCCCcccccccCCCCCHHHHHHHHHHH
Q 003669 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 600 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~ 600 (804)
+++++++ ||. .+.++.|+.+++..+++..
T Consensus 144 l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 144 IIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred chHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 9999988 775 7899999999998887654
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=2.3e-10 Score=134.76 Aligned_cols=210 Identities=19% Similarity=0.187 Sum_probs=144.8
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeee---------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--------- 482 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i--------- 482 (804)
.....|+++.|.+..+..+.+.+.. -+++.+++|+||+|+||||+++++|+.+.......
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 3567899999998888777765542 24567899999999999999999999875321111
Q ss_pred ----ccchhhhh------hh----ccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHH
Q 003669 483 ----SASQFVEI------YV----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (804)
Q Consensus 483 ----~~s~~~~~------~~----g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~L 544 (804)
+|..+.+. .+ ..+...++.+.+.+... .+.|++|||+|.+... .++.|
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--------------a~naL 152 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--------------AFNAL 152 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH--------------HHHHH
Confidence 01111100 00 01233566777666543 2469999999988543 68889
Q ss_pred HHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCc
Q 003669 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMV 623 (804)
Q Consensus 545 L~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~s 623 (804)
+..|+. ...+++||.+|+.++.+.+.+++ |+ ..+.|..|+.++....+...+...+..-+ ..+..++..+.| +
T Consensus 153 LKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 153 LKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 988884 44567777777777888888888 54 37899999999999999988876655433 335556666654 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 624 g~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
.+++.++++.+... +...||.+++...+.
T Consensus 227 lr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 227 VRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 88888888776533 234699999876653
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=1.2e-10 Score=124.59 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=114.8
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhh------hhhccchhhH---------------------HHHHHH
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE------IYVGVGASRV---------------------RSLYQE 505 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~------~~~g~~~~~l---------------------~~lf~~ 505 (804)
.++|.||||||||++|+++|..++.+++.+++..-.. .+.+...... ..++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 4899999999999999999999999999987765322 1211111100 112222
Q ss_pred HHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--------------CCCceEEEeecCCCC----
Q 003669 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------GRGNVITIASTNRPD---- 567 (804)
Q Consensus 506 a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--------------~~~~viVIatTN~~~---- 567 (804)
+. .+.+++||||+.+.++ +.+.|+..|++.. .+.++.||+|+|...
T Consensus 103 ~~--~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 103 VR--EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH--cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22 2358999999997654 5666666665411 124678999999763
Q ss_pred -CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChh--cHHHHHh--h----CCCCcHHHHHHHHHHHHHHH
Q 003669 568 -ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVAS--M----TDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 568 -~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~--dl~~la~--~----t~G~sg~DL~~Lv~~A~~~A 638 (804)
.++++|++ || ..+.++.|+.++..+|+..+.. ..+.. .+..++. + ....+ ++.++.-+...+
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~ 237 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVAT 237 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHH
Confidence 56888988 87 4789999999999999998762 22211 0111111 1 11223 344444444444
Q ss_pred HHcCCCCcCHHHHHHHHHHHH
Q 003669 639 MRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 639 ~~~~~~~It~edi~~Al~~~~ 659 (804)
....+..++.+||.+....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 238 QQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred HcCCCCCCCcHHHHHHHHHHh
Confidence 445566788888877765554
No 127
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.4e-10 Score=127.96 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=137.1
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh---
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--- 488 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~--- 488 (804)
..+..|+++.|....+..+.+.+.. -.++++++|+||+|+|||+++++++..+..+........+.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3567899999988887666655542 13456799999999999999999999875422111110000
Q ss_pred ---hhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEe
Q 003669 489 ---EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (804)
Q Consensus 489 ---~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIa 561 (804)
+.........++.+++.+... .+.+++|||+|.+... .++.|+..++. ....+++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~~le~--~~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLKTLEE--PPAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHHHHhC--CCCceEEEE
Confidence 000011224556666665432 2469999999987543 56777777774 334566666
Q ss_pred ecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003669 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 640 (804)
Q Consensus 562 tTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~ 640 (804)
+|+.+..+.+++.+ |+. .+.+++|+.++...++...+...++. ++..+..++..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC-- 217 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc--
Confidence 67777888899987 443 68999999999999998888766653 34456667776654 6666666666554332
Q ss_pred cCCCCcCHHHHHHHHH
Q 003669 641 DGRTEITTDDLLQAAQ 656 (804)
Q Consensus 641 ~~~~~It~edi~~Al~ 656 (804)
+.. ||.+++...+.
T Consensus 218 -~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 -GKN-ITRQAVTENLN 231 (367)
T ss_pred -CCC-CCHHHHHHHhC
Confidence 332 88877766543
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=1.9e-10 Score=141.61 Aligned_cols=201 Identities=22% Similarity=0.364 Sum_probs=135.4
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeeec
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~ 483 (804)
.-.++.+.|.+..+ +.++..+.. +...+++|+||||||||++++.+|..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~ei---~~~~~~l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEI---RRTIQVLSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHH---HHHHHHHhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 33566677766643 444443321 122347899999999999999999875 56778888
Q ss_pred cchhh--hhhhccchhhHHHHHHHHHhc-CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 484 ASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 484 ~s~~~--~~~~g~~~~~l~~lf~~a~~~-~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
++.+. ..|.|.....+..++..+... .++|+||||||.+.+... +.+. ....+.|... ..++.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~----~~~~--~d~~~~Lk~~----l~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK----AEGA--MDAGNMLKPA----LARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC----Ccch--hHHHHHhchh----hhcCceEEE
Confidence 87765 347777778888999888653 578999999999975321 1111 1123333322 346778999
Q ss_pred eecCCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-----ChhcHHHHHhhCCCC-----cHH
Q 003669 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-----DDVDYLAVASMTDGM-----VGA 625 (804)
Q Consensus 561 atTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-----~~~dl~~la~~t~G~-----sg~ 625 (804)
++|+..+ .+|+++.| ||. .|.++.|+.+++..|++......... .+..+...+..+.+| -+.
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCch
Confidence 9998763 57999999 997 58999999999999998775554322 223345555555544 344
Q ss_pred HHHHHHHHHHHHHH
Q 003669 626 ELANIVEVAAINMM 639 (804)
Q Consensus 626 DL~~Lv~~A~~~A~ 639 (804)
..-.++++|+....
T Consensus 384 kAidlld~a~a~~~ 397 (852)
T TIGR03346 384 KAIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHHHHH
Confidence 55577777775543
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.19 E-value=1.6e-10 Score=128.83 Aligned_cols=84 Identities=24% Similarity=0.405 Sum_probs=61.6
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc--------ccCCCceEEEeecC----CCCCCCccccCCCc
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIASTN----RPDILDPALVRPGR 578 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~--------~~~~~~viVIatTN----~~~~LdpaLlrpgR 578 (804)
-+|+||||||+++..... .+.+-....+...||..+++ ..+..+++||++.- .|+.|=|+|. ||
T Consensus 248 ~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR 323 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GR 323 (441)
T ss_pred CCEEEEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cc
Confidence 459999999999865421 12222333478888888887 23457899997762 4556777885 59
Q ss_pred ccccccCCCCCHHHHHHHHH
Q 003669 579 FDRKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 579 fd~~I~~~~Pd~~eR~~Il~ 598 (804)
|+.++.+.+++.++...||.
T Consensus 324 ~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILT 343 (441)
T ss_pred cceEEECCCCCHHHHHHHhc
Confidence 99999999999999999883
No 130
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.5e-10 Score=132.76 Aligned_cols=208 Identities=20% Similarity=0.271 Sum_probs=149.4
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce-------eee--
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-- 482 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-------~~i-- 482 (804)
.....|+++.|.+.++..+.+++.. -++..+.+|.||.||||||++|.+|..++..- +..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3567899999988888888777653 24556789999999999999999999775432 111
Q ss_pred ----ccchhhhh-----hhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 483 ----SASQFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 483 ----~~s~~~~~-----~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
+-+.+.+. -...+...+|.+.+.+.. ..+-|.+|||+|.+... .+|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------------afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------------HHHHHhcccc
Confidence 11111110 011233456777777653 33569999999988554 8999999999
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhc-HHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~d-l~~la~~t~G~sg~DL~ 628 (804)
.+..+|+||.+|..+..+++.+++++ . .+.|...+.++....+...+.+..+.-+.+ +..++....| +.||..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlSRc--q-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILSRC--Q-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhhcc--c-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 66789999999999999999999944 3 778888899999999999998887765544 4445555554 889999
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
.+++.|.... ...||.+.+...
T Consensus 219 slLDq~i~~~----~~~It~~~v~~~ 240 (515)
T COG2812 219 SLLDQAIAFG----EGEITLESVRDM 240 (515)
T ss_pred HHHHHHHHcc----CCcccHHHHHHH
Confidence 9999886432 134666665543
No 131
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=8e-11 Score=122.65 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=111.2
Q ss_pred EEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccch-hhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
++|+||+|+|||+|+++++++. +..++++++.+|...+..... ..+..+.+..+ ..++++||+++.+.+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~- 113 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ- 113 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch-
Confidence 8999999999999999999865 456888998888877543322 22223333333 45699999999986441
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC---CCccccCCCccc--ccccCCCCCHHHHHHHHHHHHc
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~---LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
.+...|+..++.+...++.+|+++...|.. +++.|.+ ||. .++.+.+|+.+.|.+|++..+.
T Consensus 114 -----------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 114 -----------RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 245666666666666667777777766664 4677777 654 4778899999999999999998
Q ss_pred cCCCCChhc-HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 603 KKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 603 ~~~l~~~~d-l~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
..++.-+.+ ...++.... -+.++|..+++.-...+
T Consensus 181 ~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 877664433 444555544 57888888888765443
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=3.2e-10 Score=128.40 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=138.1
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee----------
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF---------- 480 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~---------- 480 (804)
......|+++.|.+.++..+...+. +-+++.+++|+||+|+||||+|+++|..+...-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3456788999998888776665544 1245677999999999999999999998754210
Q ss_pred eeccch------hhh-------hhhc---cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHH
Q 003669 481 SISASQ------FVE-------IYVG---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDAT 540 (804)
Q Consensus 481 ~i~~s~------~~~-------~~~g---~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~ 540 (804)
.-.|+. +.. .+.+ .+...++.+.+.+.. ....+++|||+|.+... .
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------A 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------------H
Confidence 001111 000 0111 112345555555432 22358999999988543 5
Q ss_pred HHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhC
Q 003669 541 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMT 619 (804)
Q Consensus 541 l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t 619 (804)
++.|+..++. ....+++|.+|+.+..+.+.+.+ |.. .+.|.+++.++..+.+...+...+.. ++..+..++..+
T Consensus 144 ~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888873 34456666666667788888877 554 78999999999888888887665442 333456667676
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHH
Q 003669 620 DGMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 655 (804)
Q Consensus 620 ~G~sg~DL~~Lv~~A~~~A~~-~~~~~It~edi~~Al 655 (804)
.| +.+.+.+.++.+...+.. .....||.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 54 667777777765544321 234578888887654
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=3e-10 Score=131.61 Aligned_cols=209 Identities=20% Similarity=0.212 Sum_probs=140.5
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcccee-------e-e
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------S-I 482 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~-------~-i 482 (804)
+.....|+++.|.+.++..+...+.. -+++..+||+||+|+|||+++++++..+...-. . -
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999999888777766542 135666899999999999999999987632100 0 0
Q ss_pred ccchhhhh-----hh-c----cchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhh
Q 003669 483 SASQFVEI-----YV-G----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (804)
Q Consensus 483 ~~s~~~~~-----~~-g----~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~l 548 (804)
+|...... +. + .+...++.+.+.+... ...|++|||+|.+... .++.|+..|
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--------------A~NALLK~L 141 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--------------AFNALLKTL 141 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHHHHHHH
Confidence 00000000 00 0 1123455555443322 2348999999888554 788999999
Q ss_pred hcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHH
Q 003669 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 549 d~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL 627 (804)
+.. ..++.+|.+|+.+..+.+++++ |. ..+.|.+++.++....+...+...++. ++..+..++....| +.+++
T Consensus 142 EEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~a 215 (535)
T PRK08451 142 EEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDT 215 (535)
T ss_pred hhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 853 4567777777778999999998 53 488999999999999888888766544 23345666666655 78888
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 628 ANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
.+++..+...+ ...||.+++...
T Consensus 216 lnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 216 LTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHH
Confidence 88888776443 335777777654
No 134
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.16 E-value=1.4e-10 Score=126.37 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=97.7
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh--hhccchhh------H----HHHHHHHHhcCCceeehhH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASR------V----RSLYQEAKDNAPSVVFIDE 518 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--~~g~~~~~------l----~~lf~~a~~~~p~Il~IDE 518 (804)
.+.++|.||||||||++++.+|..++.++++++++..... .+|...-. . ...+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4569999999999999999999999999999998887665 44432110 0 112233333 356899999
Q ss_pred HHHhhhhcCCCCCCCcchhHHHHHHHHHh-----hhc----ccCCCceEEEeecCCCC------------CCCccccCCC
Q 003669 519 LDAVGRERGLIKGSGGQERDATLNQLLVC-----LDG----FEGRGNVITIASTNRPD------------ILDPALVRPG 577 (804)
Q Consensus 519 Id~l~~~r~~~~~sgge~~~~~l~~LL~~-----ld~----~~~~~~viVIatTN~~~------------~LdpaLlrpg 577 (804)
++.+.++ ....++.+|.. +.+ +..+.++.||+|.|..+ .++.+++.
T Consensus 143 in~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987554 11234444431 111 12345788999999854 45788988
Q ss_pred cccccccCCCCCHHHHHHHHHHHHc
Q 003669 578 RFDRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 578 Rfd~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
||-.++.++.|+.++..+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987654
No 135
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=129.00 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=157.1
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhh
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (804)
++.|..+ ...++.+|.|||+.|...+. +.+....++++.+++++...+..+...-.. .....+++.+
T Consensus 286 CT~Ii~l-~~kkl~~y~Gnydqy~~tr~--E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g----------~a~~~rka~s 352 (614)
T KOG0927|consen 286 CTNIIHL-DNKKLIYYEGNYDQYVKTRS--ELEENQMKAYEKQQKQIAHMKDLIARFGHG----------SAKLGRKAQS 352 (614)
T ss_pred hhhhhee-cccceeeecCCHHHHhhHHH--HHhHHHHHHHHHHHhHHHHhhHHHHhhccc----------chhhhHHHhh
Confidence 4556666 45568999999999998887 677777888888888888888877654311 1112223333
Q ss_pred hhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccc-cccccccCcccCCc--EEEECCCCCChhH
Q 003669 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTL 466 (804)
Q Consensus 390 ~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKTt 466 (804)
.++..+.+.. .|.-.....+....+.|.++..++..++...++...|.+ +.+|.++.+.+..+ +.++|||||||||
T Consensus 353 ~~K~~~km~~-~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsT 431 (614)
T KOG0927|consen 353 KEKTLDKMEA-DGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKST 431 (614)
T ss_pred hhhhHHHHhh-ccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhh
Confidence 3333222221 112222334556778899998888888888888887764 36777766665544 9999999999999
Q ss_pred HHHHHhhhhccceeeeccchhhhh-hhccchhhH----HHHHHHHHhcCCceeehhHHHHhhhhcCCCCC---------C
Q 003669 467 LAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV----RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG---------S 532 (804)
Q Consensus 467 LakaLA~el~~~~~~i~~s~~~~~-~~g~~~~~l----~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~---------s 532 (804)
|+|.+.+.+.+..+.++....... ++.+..... ....+......|..-=++++..+.+..+..+. |
T Consensus 432 LlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS 511 (614)
T KOG0927|consen 432 LLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLS 511 (614)
T ss_pred hHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcc
Confidence 999999999988888776543322 111111110 12233333333334456788888777665432 8
Q ss_pred CcchhHHHHHHHHHhhhcccCCCceEEE-eecCCCC
Q 003669 533 GGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (804)
Q Consensus 533 gge~~~~~l~~LL~~ld~~~~~~~viVI-atTN~~~ 567 (804)
+|++.+.++..++ ...++++++ .+||+.|
T Consensus 512 ~Gqr~rVlFa~l~------~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 512 DGQRRRVLFARLA------VKQPHLLLLDEPTNHLD 541 (614)
T ss_pred cccchhHHHHHHH------hcCCcEEEecCCCcCCC
Confidence 8999999999888 566777777 8888875
No 136
>PRK06620 hypothetical protein; Validated
Probab=99.15 E-value=2.5e-10 Score=118.58 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=106.9
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~ 531 (804)
+.++|+||+|+|||+|+++++...+..+.. .... . ...+ ...++++|||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH-----hcCCEEEEeccccchH-------
Confidence 458999999999999999999876543221 1100 0 0111 1236899999984411
Q ss_pred CCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCC--CCccccCCCccc--ccccCCCCCHHHHHHHHHHHHccCCCC
Q 003669 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI--LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA 607 (804)
Q Consensus 532 sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~--LdpaLlrpgRfd--~~I~~~~Pd~~eR~~Il~~~l~~~~l~ 607 (804)
..+-.+++.+ ...+..++|+++..|.. + |+|++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 100 -------~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 100 -------PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred -------HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1233333333 34556777777755553 5 78887 664 468899999999999999888765443
Q ss_pred -ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 608 -DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 608 -~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++.-.+.++.+.. -+.+.+.++++.....+...+ ..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLP-REYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 3334666677665 477888888887543344334 469988887765
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.14 E-value=8.2e-10 Score=117.01 Aligned_cols=191 Identities=21% Similarity=0.211 Sum_probs=127.0
Q ss_pred cccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc----e--eee
Q 003669 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----F--FSI 482 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~----~--~~i 482 (804)
.+......|++..|.+.++..+.+.+.. . +-...||+||||||||+.++++|.++..+ . ...
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 3556778899999988888888776653 1 22348999999999999999999988541 1 112
Q ss_pred ccchhhhhhhccchhhHHHHHHHHHhc----------CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc
Q 003669 483 SASQFVEIYVGVGASRVRSLYQEAKDN----------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 552 (804)
Q Consensus 483 ~~s~~~~~~~g~~~~~l~~lf~~a~~~----------~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~ 552 (804)
+.+..... +....++ .-|...... ++-|++|||.|.+..+ .++.|...|+.+
T Consensus 95 naSderGi--svvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~~- 156 (346)
T KOG0989|consen 95 NASDERGI--SVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMEDF- 156 (346)
T ss_pred cccccccc--cchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHHHHHhcc-
Confidence 22221111 1111111 122222211 1258999999999766 788999999954
Q ss_pred CCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhc-HHHHHhhCCCCcHHHHHHHH
Q 003669 553 GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELANIV 631 (804)
Q Consensus 553 ~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~d-l~~la~~t~G~sg~DL~~Lv 631 (804)
...+.||..||.++.|.+.+.+ |.. .+.|++...+.....|+....+.++.-+.+ +..++..+.| +-|+....+
T Consensus 157 -s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~L 231 (346)
T KOG0989|consen 157 -SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTL 231 (346)
T ss_pred -ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 4567888889999999999998 554 778888888888888888887766654333 5666666655 333333444
Q ss_pred HHH
Q 003669 632 EVA 634 (804)
Q Consensus 632 ~~A 634 (804)
+.+
T Consensus 232 qsl 234 (346)
T KOG0989|consen 232 QSL 234 (346)
T ss_pred HHh
Confidence 443
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.14 E-value=8.6e-10 Score=121.70 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=95.2
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-CCCccccCCCc
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 578 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-~LdpaLlrpgR 578 (804)
.+++++||++.+... ++..|+..|+.-. ...++++|+++|..+ .++++|+. |
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 368999999998554 6677777765321 124678889888665 78999999 9
Q ss_pred ccccccCCCCCH-HHHHHHHHHHHccC-------------------------------CCCChh--cHHHHHhhCCCCcH
Q 003669 579 FDRKIFIPKPGL-IGRMEILKVHARKK-------------------------------PMADDV--DYLAVASMTDGMVG 624 (804)
Q Consensus 579 fd~~I~~~~Pd~-~eR~~Il~~~l~~~-------------------------------~l~~~~--dl~~la~~t~G~sg 624 (804)
|...+.++.|+. ++|.+|++...... .+.+.+ -+..++..+..-+.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999998876 88899998743210 011110 02233334443355
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHc
Q 003669 625 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 660 (804)
Q Consensus 625 ~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~ 660 (804)
|--..+++.|...|..+++..++.+|+..++..+..
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 666789999999999999999999999998877653
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=4.9e-10 Score=131.47 Aligned_cols=209 Identities=18% Similarity=0.189 Sum_probs=141.0
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-------eeee-c
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-S 483 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~-------~~~i-~ 483 (804)
.....|+++.|.+.++..+.+.+.. -+++..++|+||+|+|||++++++|+.+... .+.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3567899999999888877766642 1345669999999999999999999987532 1110 0
Q ss_pred cchhhhh-------hhc---cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 484 ASQFVEI-------YVG---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 484 ~s~~~~~-------~~g---~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
|..+... +-| .....++.+.+.+.. ..+.|++|||+|.+... .++.|+..++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--------------a~naLLK~LE 144 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--------------AFNALLKTIE 144 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH--------------HHHHHHHhhc
Confidence 0000000 011 112344555544332 33468999999988543 6788998888
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~ 628 (804)
. ....+++|.+|+.+..+.+++++ |+. .+.|.+++.++..+.++..+...++. ++..+..++....| +.+++.
T Consensus 145 e--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~al 218 (563)
T PRK06647 145 E--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred c--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 45677888777778889999988 554 68899999999999998887665543 33345666766665 788888
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++++.+...+ ...||.+++..++
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8887665332 2358888776654
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.13 E-value=1.5e-10 Score=129.12 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=62.1
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc--------ccCCCceEEEeec----CCCCCCCccccCCCc
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIAST----NRPDILDPALVRPGR 578 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~--------~~~~~~viVIatT----N~~~~LdpaLlrpgR 578 (804)
-+|+||||||++....+. .+.+.....+...||..+++ ..+..+++||++. ..|+.|-|+|+- |
T Consensus 250 ~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R 325 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--R 325 (443)
T ss_pred CCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--c
Confidence 359999999999865322 12222334478888888887 2356789999776 345567788865 9
Q ss_pred ccccccCCCCCHHHHHHHHH
Q 003669 579 FDRKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 579 fd~~I~~~~Pd~~eR~~Il~ 598 (804)
|+.++.+.+++.++..+||.
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILT 345 (443)
T ss_pred cceEEECCCCCHHHHHHHhc
Confidence 99999999999999999884
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=9.9e-10 Score=130.12 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=137.4
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee---eccc--
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISAS-- 485 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~---i~~s-- 485 (804)
+.....|+++.|.+.++..+.+.+.. -+++..++|+||+|+||||+++++|..+...... ..|+
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 34577899999999888777665542 1244558999999999999999999877432110 0111
Q ss_pred ----hhhhh----h------hccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHh
Q 003669 486 ----QFVEI----Y------VGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (804)
Q Consensus 486 ----~~~~~----~------~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ 547 (804)
.+... + .......++.+.+.+.. ....|++|||+|.+... .++.|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--------------a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA--------------AFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--------------HHHHHHHH
Confidence 00000 0 00112334455444332 22458999999988543 67888888
Q ss_pred hhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHH
Q 003669 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 626 (804)
Q Consensus 548 ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~D 626 (804)
++. ...+++||.+++..+.+.+.+.+ |+. .+.|..++..+...++...+...++. ++..+..++..+.| +.++
T Consensus 144 LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred Hhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 33566777777777788888877 544 68899999999999998887766543 23346667777665 7777
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 627 LANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 627 L~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
+.+.++..... +...||.+++...+
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 77777764332 23468888876543
No 142
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=8e-10 Score=130.51 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=138.3
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee----------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---------- 481 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~---------- 481 (804)
.....|+++.|.+.++..+.+.+. +-+++.+++|+||+||||||+|+.+|+.+......
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356789999998888877666543 12566779999999999999999999987542100
Q ss_pred eccch------hhh-----h--hhcc---chhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHH
Q 003669 482 ISASQ------FVE-----I--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (804)
Q Consensus 482 i~~s~------~~~-----~--~~g~---~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l 541 (804)
-.|+. +.. . +.+. +...++.+.+.+.. ....|++|||+|.+... .+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--------------AF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH--------------HH
Confidence 01111 000 0 1111 12345555555532 23458999999988543 57
Q ss_pred HHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCC
Q 003669 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTD 620 (804)
Q Consensus 542 ~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~ 620 (804)
+.|+..|+. ....+++|.+|+.+..+.+.+.++| ..+.|.+++.++....+...+...+.. ++..+..++..+.
T Consensus 145 naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEE--PPPHAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 889988884 3445666666666788888888844 388999999999888888777655432 3344666777776
Q ss_pred CCcHHHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHH
Q 003669 621 GMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 655 (804)
Q Consensus 621 G~sg~DL~~Lv~~A~~~A~~-~~~~~It~edi~~Al 655 (804)
| +.+++.+.++.....+.. .....||.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 666666666654433311 224568888876654
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=8.7e-10 Score=126.54 Aligned_cols=208 Identities=18% Similarity=0.241 Sum_probs=137.0
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce--------e-eec
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--------F-SIS 483 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~--------~-~i~ 483 (804)
....|+++.|.+..+..+.+.+.. -+++..++|+||+|+|||++++++|..+...- + ..+
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 567899999999888777666542 13566799999999999999999998763211 0 001
Q ss_pred cchhhhh-------hhcc---chhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh
Q 003669 484 ASQFVEI-------YVGV---GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (804)
Q Consensus 484 ~s~~~~~-------~~g~---~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld 549 (804)
|..+... +.|. +...++.+.+.+. ...+.|++|||+|.+... ..+.|+..++
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------------~~n~LLk~lE 146 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------------AFNSLLKTLE 146 (451)
T ss_pred HHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--------------HHHHHHHHhh
Confidence 1111000 0111 1123343333332 234579999999988543 5788888888
Q ss_pred cccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHH
Q 003669 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (804)
Q Consensus 550 ~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~ 628 (804)
. ...++++|++||.+..+.+.+.+ |+. .+.|..++.++....+...+...+.. ++..+..++..+.| +.+++.
T Consensus 147 e--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~ 220 (451)
T PRK06305 147 E--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAE 220 (451)
T ss_pred c--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34577777777888899999988 554 78999999999999888877765543 33446677777754 556666
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
++++..... .+ ..|+.+++..++
T Consensus 221 ~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 221 SLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 666654322 22 348888876654
No 144
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-09 Score=121.30 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=136.2
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc-----eeeeccchhhhhh---------hc------cch-hhHHHHHHHHH
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIY---------VG------VGA-SRVRSLYQEAK 507 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~-----~~~i~~s~~~~~~---------~g------~~~-~~l~~lf~~a~ 507 (804)
..|.+++++||||||||..++.++.++... +++|+|-...+.| ++ ... ..+..+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 345569999999999999999999987443 7899988766542 11 111 11233333333
Q ss_pred h-cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc-ccc
Q 003669 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (804)
Q Consensus 508 ~-~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf-d~~ 582 (804)
. ...-|+++||+|.+....+ .++..|+...+.. ..++.+|+.+|..+ .+||.+.+ +| ...
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~ 184 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSE 184 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcce
Confidence 3 3345899999999976531 2666666655543 56788999998764 78888877 44 335
Q ss_pred ccCCCCCHHHHHHHHHHHHccCC----CCChh-c-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 583 IFIPKPGLIGRMEILKVHARKKP----MADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~----l~~~~-d-l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
|.|++++.+|...|+........ +.+++ + ...++....| ..|-.-.+++.|+..|.+++...++.+++..|..
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 89999999999999998876432 22221 1 2233445555 5666779999999999999999999999999954
Q ss_pred HHH
Q 003669 657 IEE 659 (804)
Q Consensus 657 ~~~ 659 (804)
.+.
T Consensus 264 ~~~ 266 (366)
T COG1474 264 EIE 266 (366)
T ss_pred Hhh
Confidence 443
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.11 E-value=6.5e-10 Score=122.43 Aligned_cols=217 Identities=20% Similarity=0.273 Sum_probs=131.1
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhc-------c--ceeeecc
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-------V--NFFSISA 484 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~-------~--~~~~i~~ 484 (804)
.+.|.++.|....+..+.-... + .| .+++||.|+||+||||+++++++-+. . .+..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~------~~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---D------PG---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---c------cC---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4567778887777654432111 0 01 13599999999999999999999773 2 1111111
Q ss_pred c----------------hhhhhhhccchhhH-H-HHHHHH-------------HhcCCceeehhHHHHhhhhcCCCCCCC
Q 003669 485 S----------------QFVEIYVGVGASRV-R-SLYQEA-------------KDNAPSVVFIDELDAVGRERGLIKGSG 533 (804)
Q Consensus 485 s----------------~~~~~~~g~~~~~l-~-~lf~~a-------------~~~~p~Il~IDEId~l~~~r~~~~~sg 533 (804)
. .+...-.+.+...+ . ..++.. .....+++++||++.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 00001000000000 0 001111 0112358999999998655
Q ss_pred cchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-CCCccccCCCcccccccCCCCCH-HHHHHHHHHH
Q 003669 534 GQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVH 600 (804)
Q Consensus 534 ge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-~LdpaLlrpgRfd~~I~~~~Pd~-~eR~~Il~~~ 600 (804)
++..|+..|+.-. ....+++++++|..+ .++++++. ||...+.+++|.. ++|.+|+...
T Consensus 144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6777777776421 235688999999755 68889988 9999999988877 8899999875
Q ss_pred HccCC----C------C--------------------Chhc---HHHHHhhCC-CCcHHHHHHHHHHHHHHHHHcCCCCc
Q 003669 601 ARKKP----M------A--------------------DDVD---YLAVASMTD-GMVGAELANIVEVAAINMMRDGRTEI 646 (804)
Q Consensus 601 l~~~~----l------~--------------------~~~d---l~~la~~t~-G~sg~DL~~Lv~~A~~~A~~~~~~~I 646 (804)
..... . . ++.. +..++..+. .-..+++. +++.|...|..+|+..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 43210 0 0 0000 112222222 22445665 99999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 003669 647 TTDDLLQAAQIEE 659 (804)
Q Consensus 647 t~edi~~Al~~~~ 659 (804)
+.+|+..+...+.
T Consensus 295 ~~~Di~~~~~~vl 307 (334)
T PRK13407 295 GRSHLRSVATMAL 307 (334)
T ss_pred CHHHHHHHHHHhh
Confidence 9999988775554
No 146
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.09 E-value=1.8e-09 Score=117.78 Aligned_cols=202 Identities=22% Similarity=0.254 Sum_probs=128.2
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-----ceeeeccc
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISAS 485 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-----~~~~i~~s 485 (804)
...+..|++..|...++..+...+.. . . .++++|+||+|+|||++++++++++.. .++.++.+
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE---K--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34556788888888777666655532 1 1 124899999999999999999998632 23344332
Q ss_pred hhhhhhhccchhhHHHHH-HHHHh-----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEE
Q 003669 486 QFVEIYVGVGASRVRSLY-QEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (804)
Q Consensus 486 ~~~~~~~g~~~~~l~~lf-~~a~~-----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viV 559 (804)
+.. ....+...+ +.+.. ..+.+++|||+|.+... ....|+..++... .++.+
T Consensus 78 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~~~l 135 (319)
T PRK00440 78 DER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QNTRF 135 (319)
T ss_pred ccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CCCeE
Confidence 211 111111122 22221 22458999999887443 3455666666433 34556
Q ss_pred EeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 560 IatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
|.++|.+..+.+++.+ |+. .+.|++|+.++...+++.++...+.. ++..+..++..+.| +.+.+.+.++.+...
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~- 210 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT- 210 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-
Confidence 6667777777777877 655 68999999999999999988766543 33456777777655 455555555544321
Q ss_pred HHcCCCCcCHHHHHHHH
Q 003669 639 MRDGRTEITTDDLLQAA 655 (804)
Q Consensus 639 ~~~~~~~It~edi~~Al 655 (804)
...||.+++..++
T Consensus 211 ----~~~it~~~v~~~~ 223 (319)
T PRK00440 211 ----GKEVTEEAVYKIT 223 (319)
T ss_pred ----CCCCCHHHHHHHh
Confidence 3469999998775
No 147
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.07 E-value=2.7e-09 Score=117.87 Aligned_cols=220 Identities=20% Similarity=0.232 Sum_probs=135.9
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-------ceeeec--
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSIS-- 483 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-------~~~~i~-- 483 (804)
..+-|.++.|.++.+..+.... .++ -.+|++|.|++||||||++++++..+.. +|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 3567888888888775554322 122 1257999999999999999999876521 121000
Q ss_pred ----cch-------------------hhhhhhccchhhH------HHHHHHH---------HhcCCceeehhHHHHhhhh
Q 003669 484 ----ASQ-------------------FVEIYVGVGASRV------RSLYQEA---------KDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 484 ----~s~-------------------~~~~~~g~~~~~l------~~lf~~a---------~~~~p~Il~IDEId~l~~~ 525 (804)
++. +.+.-.|.....+ ...+... .....+++++||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 000 0000001111110 1111111 0122368999999998665
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-CCCccccCCCcccccccCCCCC-HHH
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPG-LIG 592 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-~LdpaLlrpgRfd~~I~~~~Pd-~~e 592 (804)
++..|+..|+... ...++++|+|.|..+ .++++|+. ||...+.+..|+ .+.
T Consensus 160 --------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 160 --------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred --------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 6666777665311 134688888888765 68999998 999999999997 589
Q ss_pred HHHHHHHHHccC--CC----------------------------CChhc---HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003669 593 RMEILKVHARKK--PM----------------------------ADDVD---YLAVASMTDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 593 R~~Il~~~l~~~--~l----------------------------~~~~d---l~~la~~t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
+.+|++...... +. .++.. +..++..+.--+.|--..+++.|...|.
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999998754211 00 00101 1223333333356666688889999999
Q ss_pred HcCCCCcCHHHHHHHHHHHHc
Q 003669 640 RDGRTEITTDDLLQAAQIEER 660 (804)
Q Consensus 640 ~~~~~~It~edi~~Al~~~~~ 660 (804)
.+|+..++.+|+..++..+..
T Consensus 304 l~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998877653
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.4e-09 Score=129.03 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=135.6
Q ss_pred cCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee----eccch
Q 003669 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----ISASQ 486 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~----i~~s~ 486 (804)
+.....|+++.|.+..+..+.+++.. -+++.++||+||+|+|||++|+++|+.+...... -.|+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34567889999988888777766653 1245568999999999999999999987542110 01110
Q ss_pred ------h--------h--hhhhccchhhHHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHH
Q 003669 487 ------F--------V--EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (804)
Q Consensus 487 ------~--------~--~~~~g~~~~~l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~ 546 (804)
+ . +.....+...++.+.+.+... ...|++|||+|.+... .++.||.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--------------a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--------------AFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------------HHHHHHH
Confidence 0 0 000112234566777665432 2459999999988543 6788999
Q ss_pred hhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHH
Q 003669 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGA 625 (804)
Q Consensus 547 ~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~ 625 (804)
.|+. ....+++|++|+.++.+.+.+++ |+. .+.|..++.++....+...+.+.+.. +...+..++..+.| +.+
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr 217 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLR 217 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45567788778888888899988 543 68888888888887777766654433 22336667777766 446
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 626 ELANIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 626 DL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
++.++++..... . ..||.+++.+
T Consensus 218 ~A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 218 DAESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHhc---c--CCCCHHHHHH
Confidence 666666653322 1 2466666543
No 149
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=1.7e-10 Score=115.59 Aligned_cols=110 Identities=33% Similarity=0.373 Sum_probs=74.8
Q ss_pred cEEEECCCCCChhHHHHHHhhhhcc----ceeeeccchhhhhhhccchhhHHHHHHH----HHhcCCceeehhHHHHhhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQE----AKDNAPSVVFIDELDAVGR 524 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~----~~~~i~~s~~~~~~~g~~~~~l~~lf~~----a~~~~p~Il~IDEId~l~~ 524 (804)
.++|+||+|||||.|+++||..+.. +++.++++++....- ....+..+... .......||+|||||++++
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 4899999999999999999999986 999999999877210 00111111111 1111123999999999987
Q ss_pred hcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCC
Q 003669 525 ERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD 567 (804)
Q Consensus 525 ~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~ 567 (804)
. .+...+.....+++.||+.|++- .+..+++||+|+|.-.
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5 12233444456889999988752 2346899999999654
No 150
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=6e-10 Score=105.27 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=79.6
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccchhh---HHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASR---VRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~~~---l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
++++++||+|+|||++++.++..+ +.+++.+++.............. ............++++++||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 458999999999999999999988 78888888877655432211111 111222333456789999999987332
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhcccC----CCceEEEeecCCCC--CCCccccCCCcccccccCC
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFEG----RGNVITIASTNRPD--ILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~~----~~~viVIatTN~~~--~LdpaLlrpgRfd~~I~~~ 586 (804)
....++..+..... ..++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 100 --------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 100 --------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred --------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 23344444443322 46788888888776 67777776 888777765
No 151
>PRK09087 hypothetical protein; Validated
Probab=99.04 E-value=1e-09 Score=114.95 Aligned_cols=170 Identities=18% Similarity=0.170 Sum_probs=112.3
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 533 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sg 533 (804)
++|+||+|+|||||+++++...+.. +++...+... ++..... .+++|||++.+...
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~-------- 102 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD-------- 102 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC--------
Confidence 8999999999999999999875443 3433332221 1222111 37889999865211
Q ss_pred cchhHHHHHHHHHhhhcccCCCceEEEeecCCCC---CCCccccCCCcc--cccccCCCCCHHHHHHHHHHHHccCCCC-
Q 003669 534 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARKKPMA- 607 (804)
Q Consensus 534 ge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~---~LdpaLlrpgRf--d~~I~~~~Pd~~eR~~Il~~~l~~~~l~- 607 (804)
...|+..++.+...+..+||+++..|. ...|.|++ || ..++.+.+|+.+.|.+|++.++....+.
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 123444444444555667777765554 23678888 66 4788999999999999999999876554
Q ss_pred ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 003669 608 DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (804)
Q Consensus 608 ~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (804)
++..+..++.+.. -+.+.+..+++.....+...+ ..||...+.+++...
T Consensus 174 ~~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3334666777765 355666666666555555545 459999999988754
No 152
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=3.8e-09 Score=125.26 Aligned_cols=209 Identities=19% Similarity=0.257 Sum_probs=136.6
Q ss_pred CccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceeee---------
Q 003669 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--------- 482 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i--------- 482 (804)
.....|+++.|....+..+.+.+.. -+++..+||+||+|+|||++++++|..+.......
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 3567899999988888776666542 23566799999999999999999999774211000
Q ss_pred ccchhhhh-------hhc---cchhhHHHHHHHHHhcC----CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhh
Q 003669 483 SASQFVEI-------YVG---VGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (804)
Q Consensus 483 ~~s~~~~~-------~~g---~~~~~l~~lf~~a~~~~----p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~l 548 (804)
+|..+... +-+ .....++.+.+.+...+ .-|++|||+|.+... .++.|+..|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--------------a~naLLK~L 145 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--------------AFNAFLKTL 145 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--------------HHHHHHHHH
Confidence 01111000 001 11234566665554332 348999999888543 688899989
Q ss_pred hcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHHHH
Q 003669 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 549 d~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~DL 627 (804)
+. ...++++|.+|+....|-+.+++ |.. ++.|.+++.++....+...+...++..+ ..+..++..+. .+.+++
T Consensus 146 Ee--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr~a 219 (614)
T PRK14971 146 EE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMRDA 219 (614)
T ss_pred hC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHH
Confidence 84 34566777777677888999988 543 7999999999999999888877665433 34666777764 466666
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
.+++......+ +.. |+.+++...+
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 66665544322 222 6766665443
No 153
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6e-10 Score=121.76 Aligned_cols=238 Identities=19% Similarity=0.231 Sum_probs=134.5
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh---hhhhcCchHHH
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQ---GEAEQNPHLKM 386 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~---~~~~~~~~~~~ 386 (804)
++.|.++ ..-++.+|+|||.-|...+. +......+.++.+++++++++++-.....+...... .+..... .+.
T Consensus 476 CtdIIHL-D~qkLhyYrGNY~~FKKmY~--Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~-~Kn 551 (807)
T KOG0066|consen 476 CTDIIHL-DNQKLHYYRGNYTLFKKMYA--QKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGG-KKN 551 (807)
T ss_pred HHHHhhh-hhhhhhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc-ccc
Confidence 4456666 66789999999999999998 556667788888888888887754332211100000 0000000 011
Q ss_pred Hhhhhh--HHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhc-cccccccccCc--ccCCcEEEECCCC
Q 003669 387 AMQFMK--SGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGV--RIPGGILLCGPPG 461 (804)
Q Consensus 387 ~v~~~~--i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l-~~~~~~~~~gl--~i~~gvLL~Gp~G 461 (804)
..+.++ ..+.+.| ..+-...+.|++...+...++++.++...| +...+|..+++ .....|+|+||||
T Consensus 552 q~dded~gapELL~R--------pKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNG 623 (807)
T KOG0066|consen 552 QNDDEDAGAPELLQR--------PKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNG 623 (807)
T ss_pred cCccccccCHHHHhC--------chheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCC
Confidence 111111 1122221 012234678888888999999999999888 45567776554 4455699999999
Q ss_pred CChhHHHHHHhhhhccceeeeccchhhhh-hhccchhh-H---HHHHHHHHhcCCceeehhHHHHhhhhcCCC-------
Q 003669 462 VGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASR-V---RSLYQEAKDNAPSVVFIDELDAVGRERGLI------- 529 (804)
Q Consensus 462 tGKTtLakaLA~el~~~~~~i~~s~~~~~-~~g~~~~~-l---~~lf~~a~~~~p~Il~IDEId~l~~~r~~~------- 529 (804)
+|||||++.|.|.+.+.-+.+.-..-... ++.+.... + ..-.+.+.+. - -+--.+..+.++..+..
T Consensus 624 VGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~-F-Nlpyq~ARK~LG~fGL~sHAHTik 701 (807)
T KOG0066|consen 624 VGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK-F-NLPYQEARKQLGTFGLASHAHTIK 701 (807)
T ss_pred ccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh-c-CCChHHHHHHhhhhhhhhccceEe
Confidence 99999999999999776655433221111 11111000 0 0000010000 0 01123344433333221
Q ss_pred --CCCCcchhHHHHHHHHHhhhcccCCCceEEE-eecCCCC
Q 003669 530 --KGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (804)
Q Consensus 530 --~~sgge~~~~~l~~LL~~ld~~~~~~~viVI-atTN~~~ 567 (804)
.-|||++.+.++..|. .....|+|+ ..||..+
T Consensus 702 ikdLSGGQKaRValaeLa------l~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELA------LGGPDVLILDEPTNNLD 736 (807)
T ss_pred eeecCCcchHHHHHHHHh------cCCCCEEEecCCCCCcc
Confidence 1289999999998887 445566666 6777554
No 154
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.95 E-value=1e-08 Score=110.51 Aligned_cols=128 Identities=22% Similarity=0.272 Sum_probs=92.0
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC------------CCCCCccccCCCc
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~------------~~~LdpaLlrpgR 578 (804)
|.|+||||++-+.-. .+..|-..|+. .... ++|++||+ |..+|..|+. |
T Consensus 292 pGVLFIDEvHmLDIE--------------~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhHH--------------HHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 667788877766433 34444444442 2223 56667774 5677777777 5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 579 fd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
+= +|...+++.++..+|++..+....+. ++.-++.|+.....-|-|--.+|+.-|...|.+++...|..+|+..|...
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 53 67788999999999999998766554 33346777777776777877889999999999999999999999988665
Q ss_pred H
Q 003669 658 E 658 (804)
Q Consensus 658 ~ 658 (804)
-
T Consensus 432 F 432 (450)
T COG1224 432 F 432 (450)
T ss_pred H
Confidence 4
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.95 E-value=1.3e-08 Score=106.33 Aligned_cols=190 Identities=23% Similarity=0.349 Sum_probs=126.4
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 489 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~ 489 (804)
..+.+++..|++..+..+.+-...+.. | ....++||+|+.|||||+++|++..+. |..++.+.-..+..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~-------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ-------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc-------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 456788899999998877665555421 1 234559999999999999999999866 55677776655432
Q ss_pred hhhccchhhHHHHHHHHHhcC-CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--CCCceEEEeecCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNRP 566 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~-p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--~~~~viVIatTN~~ 566 (804)
+..+++.++..+ .=|||+|++- +.. + ......|-..||+-. ...||+|.+|+|+-
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~---------~---d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS-FEE---------G---DTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC-CCC---------C---cHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 344666665432 4489999862 111 1 113456666667632 35789999999976
Q ss_pred CCCCcccc----------C-----------CCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-hc----HHHHHhhCC
Q 003669 567 DILDPALV----------R-----------PGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VD----YLAVASMTD 620 (804)
Q Consensus 567 ~~LdpaLl----------r-----------pgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~d----l~~la~~t~ 620 (804)
..++..+. . ..||+..|.|.+|+.++-.+|++.++...++.-+ .. ....|....
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 43332111 1 1399999999999999999999999986665533 11 233445556
Q ss_pred CCcHHHHHHHHH
Q 003669 621 GMVGAELANIVE 632 (804)
Q Consensus 621 G~sg~DL~~Lv~ 632 (804)
|.||+-..+.++
T Consensus 232 ~RSGRtA~QF~~ 243 (249)
T PF05673_consen 232 GRSGRTARQFID 243 (249)
T ss_pred CCCHHHHHHHHH
Confidence 677776555544
No 156
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=117.07 Aligned_cols=128 Identities=33% Similarity=0.451 Sum_probs=90.4
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh--hccchhhH------------HHHHHHHHhcCCceeehh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY--VGVGASRV------------RSLYQEAKDNAPSVVFID 517 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~--~g~~~~~l------------~~lf~~a~~~~p~Il~ID 517 (804)
+.++|.||||||||+|++.+|..++.+++++.|....... +|...-.. +-+|.... +++++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 3489999999999999999999999999999998766541 11110000 11122111 399999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc----------ccCCCceEEEeecC-----CCCCCCccccCCCccccc
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDG----------FEGRGNVITIASTN-----RPDILDPALVRPGRFDRK 582 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~----------~~~~~~viVIatTN-----~~~~LdpaLlrpgRfd~~ 582 (804)
||+...+. +.+.|+..|++ +.-...++||+|+| ....+++++++ ||-..
T Consensus 120 EInra~p~--------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 120 EINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred ccccCCHH--------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 99987665 77778877775 22235688899999 45578999999 99888
Q ss_pred ccCCCCCHHH-HHHHHHH
Q 003669 583 IFIPKPGLIG-RMEILKV 599 (804)
Q Consensus 583 I~~~~Pd~~e-R~~Il~~ 599 (804)
++++.|+.++ ...++..
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 9999995444 4444443
No 157
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=1.6e-08 Score=107.80 Aligned_cols=188 Identities=13% Similarity=0.180 Sum_probs=114.4
Q ss_pred EEEECCCCCChhHHHHHHhhhhccc-eee---e----ccchhhhh---hhccch------hhHHHHH----HHHHhcCCc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVN-FFS---I----SASQFVEI---YVGVGA------SRVRSLY----QEAKDNAPS 512 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~-~~~---i----~~s~~~~~---~~g~~~------~~l~~lf----~~a~~~~p~ 512 (804)
++|+||+|+||||+++.+++.+... +.. + +..++... ..|... ..+..+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 7899999999999999999887532 111 1 11111111 112111 1111222 122345567
Q ss_pred eeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-CCCceEEEeecCC--CCCCC----ccccCCCcccccccC
Q 003669 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNR--PDILD----PALVRPGRFDRKIFI 585 (804)
Q Consensus 513 Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-~~~~viVIatTN~--~~~Ld----paLlrpgRfd~~I~~ 585 (804)
+++|||++.+... .+..+....+... ....+.|+.+... .+.+. ..+.+ |+...+.+
T Consensus 126 vliiDe~~~l~~~--------------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 126 LLVVDEAQNLTPE--------------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred EEEEECcccCCHH--------------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 8999999887432 2222221111111 1222333333321 11221 12434 67778899
Q ss_pred CCCCHHHHHHHHHHHHccCCC-----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 003669 586 PKPGLIGRMEILKVHARKKPM-----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (804)
Q Consensus 586 ~~Pd~~eR~~Il~~~l~~~~l-----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (804)
++.+.++..+++...+...+. -.+..+..+...+.|.. +.|..+++.+...|..++...|+.+++..++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999988864331 23345777888898875 5599999999999999999999999999998754
No 158
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.93 E-value=1.1e-08 Score=122.44 Aligned_cols=189 Identities=21% Similarity=0.271 Sum_probs=122.1
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhc-----------------------------------cceeeeccchhhhhhhccch
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAG-----------------------------------VNFFSISASQFVEIYVGVGA 496 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~-----------------------------------~~~~~i~~s~~~~~~~g~~~ 496 (804)
+|++|.|++|||||+++++|+..+. .+|+.+.++......+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4599999999999999999998762 35555544433222222210
Q ss_pred hhHHHHHHH---------HHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCc
Q 003669 497 SRVRSLYQE---------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGN 556 (804)
Q Consensus 497 ~~l~~lf~~---------a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~ 556 (804)
+...+.. +.....+++|||||+.+... +++.|+..|+.-. ...+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCC
Confidence 0000100 00112359999999998665 6778888776321 1246
Q ss_pred eEEEeecCCC-CCCCccccCCCcccccccCCCCC-HHHHHHHHHHHHccC------------------------------
Q 003669 557 VITIASTNRP-DILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKK------------------------------ 604 (804)
Q Consensus 557 viVIatTN~~-~~LdpaLlrpgRfd~~I~~~~Pd-~~eR~~Il~~~l~~~------------------------------ 604 (804)
+++|+|+|.. ..+.++|+. ||+..|.++.+. .+++.++++..+...
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS 247 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 8999999964 368889988 999888887664 567777776533200
Q ss_pred -CCCChhcHHHHHhhC--CCC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 003669 605 -PMADDVDYLAVASMT--DGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 605 -~l~~~~dl~~la~~t--~G~-sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (804)
.+ ++.....++..+ .|. +.+-...+++.|...|..+++..|+.+|+..|+..+.
T Consensus 248 V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 248 VRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 01 111122222221 244 3555667888898999999999999999999988776
No 159
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.93 E-value=1.4e-08 Score=120.33 Aligned_cols=189 Identities=21% Similarity=0.233 Sum_probs=125.6
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhcc--ceeeeccchhhhhhhccchhhHHHHHHH---------HHhcCCceeehhHHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQE---------AKDNAPSVVFIDELD 520 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~--~~~~i~~s~~~~~~~g~~~~~l~~lf~~---------a~~~~p~Il~IDEId 520 (804)
++|+|.|++|||||+++++|+..++. +|+.+..+......+|.. .+...+.. +.....+++|+|||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 46999999999999999999997753 588777543333233321 00000000 001223589999999
Q ss_pred HhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC---CCCccccCCCcccccccCC
Q 003669 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD---ILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 521 ~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~---~LdpaLlrpgRfd~~I~~~ 586 (804)
.+.+. +++.|+..|+.-. ...++.||+|+|..+ .++++|+. ||+.++.+.
T Consensus 95 rl~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 98765 7778887776421 124688999999865 78889998 999877664
Q ss_pred -CCCHHHHHHHHHHHHccC-------------------------CCCChhcHHHHHh--hCCCCc-HHHHHHHHHHHHHH
Q 003669 587 -KPGLIGRMEILKVHARKK-------------------------PMADDVDYLAVAS--MTDGMV-GAELANIVEVAAIN 637 (804)
Q Consensus 587 -~Pd~~eR~~Il~~~l~~~-------------------------~l~~~~dl~~la~--~t~G~s-g~DL~~Lv~~A~~~ 637 (804)
.|+.++|.+|++..+... .+.++ ....++. ...|.+ .+--..+++-|...
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 567778899888755211 11111 1222222 123443 45555788889889
Q ss_pred HHHcCCCCcCHHHHHHHHHHHH
Q 003669 638 MMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 638 A~~~~~~~It~edi~~Al~~~~ 659 (804)
|..+++..|+.+|+..|+..+.
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998776
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.91 E-value=7.8e-09 Score=104.83 Aligned_cols=144 Identities=23% Similarity=0.321 Sum_probs=97.5
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc------------------------eeeeccchhhhhhhccchhhHHHHHH
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 504 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~------------------------~~~i~~s~~~~~~~g~~~~~l~~lf~ 504 (804)
+++..++|+||+|+|||++++.++..+... +..+.... .......++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456679999999999999999999876321 11111100 0011234555566
Q ss_pred HHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccc
Q 003669 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (804)
Q Consensus 505 ~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd 580 (804)
.+.. ....|++|||+|.+... ..+.|+..|+. ...++++|.+||.+..+.+++.+ |..
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 5544 23458999999998654 57788888885 34466677777777899999988 553
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCC
Q 003669 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG 621 (804)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G 621 (804)
.+.|++|+.++..+++... ++. +..+..++..+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 232 2335556666554
No 161
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=1.5e-08 Score=118.22 Aligned_cols=190 Identities=16% Similarity=0.148 Sum_probs=120.2
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeee----ccchhhhhhhcc-chhhHHHHHH--HHHhcCCceeehhHHHHhhhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYVGV-GASRVRSLYQ--EAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i----~~s~~~~~~~g~-~~~~l~~lf~--~a~~~~p~Il~IDEId~l~~~ 525 (804)
.+||+|+||+|||+++++++.......+.. ++..+....... ..+.. .++ .......++++|||++.+...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~ 315 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCIDEFDKMDDS 315 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEechhhCCHH
Confidence 499999999999999999998764332111 111111100000 00000 000 001123458999999998654
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-------------CCCccccCCCcccc
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDR 581 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-------------~LdpaLlrpgRfd~ 581 (804)
....|+..|+.-. -+.++.||+|+|+.. .|++++++ |||.
T Consensus 316 --------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 316 --------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred --------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 4555666554311 125688999999753 58999999 9998
Q ss_pred cccC-CCCCHHHHHHHHHHHHccCC-----------------------------CC---ChhcHHHHH-----hh-----
Q 003669 582 KIFI-PKPGLIGRMEILKVHARKKP-----------------------------MA---DDVDYLAVA-----SM----- 618 (804)
Q Consensus 582 ~I~~-~~Pd~~eR~~Il~~~l~~~~-----------------------------l~---~~~dl~~la-----~~----- 618 (804)
.+.+ +.|+.+...+|.++.+.... +. .+.....+. .+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 6554 78999988888876442110 00 000011110 11
Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHc
Q 003669 619 -----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 660 (804)
Q Consensus 619 -----t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~ 660 (804)
..+.|.|.+..+++-|...|..+.+..|+.+|+..|+..+..
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 235689999999999999999999999999999999887653
No 162
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=5.8e-10 Score=107.21 Aligned_cols=109 Identities=32% Similarity=0.467 Sum_probs=71.8
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh--hhccch---hhH----HHHHHHHHhcCCceeehhHHHHhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA---SRV----RSLYQEAKDNAPSVVFIDELDAVG 523 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--~~g~~~---~~l----~~lf~~a~~~~p~Il~IDEId~l~ 523 (804)
+|+|+||||||||+|++.+|..++.++..+.++...+. .+|.-. ... ..+...++ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 37999999999999999999999999999888875543 111110 000 11111111 45799999999876
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCC------ceEEEeecCCCC----CCCccccCCCcc
Q 003669 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRG------NVITIASTNRPD----ILDPALVRPGRF 579 (804)
Q Consensus 524 ~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~------~viVIatTN~~~----~LdpaLlrpgRf 579 (804)
+. ++..|+..+++-. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 44 6666666665410 011 489999999988 89999998 76
No 163
>PHA02244 ATPase-like protein
Probab=98.89 E-value=7.2e-08 Score=106.50 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=82.0
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh--hhcc--chhhH--HHHHHHHHhcCCceeehhHHHHhhhhc
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGV--GASRV--RSLYQEAKDNAPSVVFIDELDAVGRER 526 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--~~g~--~~~~l--~~lf~~a~~~~p~Il~IDEId~l~~~r 526 (804)
.++|+||+|||||+|++++|..++.+++.++.. ... ..|. ....+ ..++..+ ..+++++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH-
Confidence 489999999999999999999999999988742 211 1111 01111 1233333 23569999999987654
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhc---------ccCCCceEEEeecCCC-----------CCCCccccCCCcccccccCC
Q 003669 527 GLIKGSGGQERDATLNQLLVCLDG---------FEGRGNVITIASTNRP-----------DILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 527 ~~~~~sgge~~~~~l~~LL~~ld~---------~~~~~~viVIatTN~~-----------~~LdpaLlrpgRfd~~I~~~ 586 (804)
++..|...++. .....++.+|+|+|.+ ..+++++++ ||- .|+++
T Consensus 196 -------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 196 -------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 34444444432 1234678999999973 477899998 986 78999
Q ss_pred CCCHHHHHHHH
Q 003669 587 KPGLIGRMEIL 597 (804)
Q Consensus 587 ~Pd~~eR~~Il 597 (804)
.|+ +....|.
T Consensus 260 yp~-~~E~~i~ 269 (383)
T PHA02244 260 YDE-KIEHLIS 269 (383)
T ss_pred CCc-HHHHHHh
Confidence 887 3333444
No 164
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=6.1e-09 Score=124.84 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=93.6
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhh
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (804)
++.+..+ ..+++..|.|+|+.|..+++ ++.....++++.++.++++++..+++... .. .+. +...+
T Consensus 213 ~d~i~~L-~~G~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~---~a--~~~------~~a~~ 278 (638)
T PRK10636 213 VDKIIHI-EQQSLFEYTGNYSSFEVQRA--TRLAQQQAMYESQQERVAHLQSYIDRFRA---KA--TKA------KQAQS 278 (638)
T ss_pred cCEEEEE-eCCEEEEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hh--hhH------HHHHH
Confidence 3455555 56788899999999997665 33334445555566666666665543211 00 000 00011
Q ss_pred hhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHH
Q 003669 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLL 467 (804)
Q Consensus 390 ~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtL 467 (804)
..+..+.+.... | ........+.|+.....++.++.++++...|.+...+.++++.+.+| +.|+||||+|||||
T Consensus 279 r~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTL 354 (638)
T PRK10636 279 RIKMLERMELIA--P--AHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTL 354 (638)
T ss_pred HHHHHHHhhccc--c--cccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHH
Confidence 111111111100 0 00012233445443334555666777777777667889999999988 99999999999999
Q ss_pred HHHHhhhhccceeeeccc
Q 003669 468 AKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 468 akaLA~el~~~~~~i~~s 485 (804)
+++|+|...+..+.|..+
T Consensus 355 lk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 355 IKLLAGELAPVSGEIGLA 372 (638)
T ss_pred HHHHhCCCCCCCCeEEEC
Confidence 999999887666666543
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=3.9e-09 Score=98.55 Aligned_cols=124 Identities=34% Similarity=0.439 Sum_probs=78.1
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccc---eeeeccchhhhhh--------------hccchhhHHHHHHHHHhcCCcee
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIY--------------VGVGASRVRSLYQEAKDNAPSVV 514 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~---~~~i~~s~~~~~~--------------~g~~~~~l~~lf~~a~~~~p~Il 514 (804)
..++|+|||||||||+++.++..+... ++.++++...... ..........+++.+....++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 348999999999999999999988764 7777777544321 11223345667788887778999
Q ss_pred ehhHHHHhhhhcCCCCCCCcchhHHHHHHH---HHhhhcccCCCceEEEeecCC-CCCCCccccCCCcccccccCCCC
Q 003669 515 FIDELDAVGRERGLIKGSGGQERDATLNQL---LVCLDGFEGRGNVITIASTNR-PDILDPALVRPGRFDRKIFIPKP 588 (804)
Q Consensus 515 ~IDEId~l~~~r~~~~~sgge~~~~~l~~L---L~~ld~~~~~~~viVIatTN~-~~~LdpaLlrpgRfd~~I~~~~P 588 (804)
++||++.+...... ..... ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 83 iiDei~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQE-----------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHH-----------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999888654210 00000 000111123456788888886 2333344443 77777776544
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.84 E-value=2.3e-08 Score=113.90 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=115.2
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhcc--ceeeeccch-hhhhhhccc-hhhH--HHHHHHHHhc---CCceeehhHHHHh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQ-FVEIYVGVG-ASRV--RSLYQEAKDN---APSVVFIDELDAV 522 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~--~~~~i~~s~-~~~~~~g~~-~~~l--~~lf~~a~~~---~p~Il~IDEId~l 522 (804)
..++|.||||||||++|++|+...+. +|..+.+.- .....+|.. .... ..-|...... ...++|+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 34899999999999999999986643 333332220 111222211 0000 0112211111 2348999999877
Q ss_pred hhhcCCCCCCCcchhHHHHHHHHHhhhccc--------CCCceEEEeecCCCCC---CCccccCCCcccccccCCCCC-H
Q 003669 523 GRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPG-L 590 (804)
Q Consensus 523 ~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--------~~~~viVIatTN~~~~---LdpaLlrpgRfd~~I~~~~Pd-~ 590 (804)
.+. +++.||..|++-. .-+.-++++|||.... ..+++.. ||-..+.+++|+ .
T Consensus 120 sp~--------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 120 GPA--------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred CHH--------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 655 7888888885321 1112345566674322 2347888 998888999997 4
Q ss_pred HHHHHHHHHHHcc--CCC-----CChhc--------------------HHHHHhh---C---CCCcHHHHHHHHHHHHHH
Q 003669 591 IGRMEILKVHARK--KPM-----ADDVD--------------------YLAVASM---T---DGMVGAELANIVEVAAIN 637 (804)
Q Consensus 591 ~eR~~Il~~~l~~--~~l-----~~~~d--------------------l~~la~~---t---~G~sg~DL~~Lv~~A~~~ 637 (804)
++..+|+...... ... ....+ +..+... + ...|+|--..+++-|...
T Consensus 184 ~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~ 263 (498)
T PRK13531 184 ANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS 263 (498)
T ss_pred HHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH
Confidence 5667788653221 101 00000 1122221 2 237889999999999999
Q ss_pred HHHcCCCCcCHHHHHHHHHHHHcC
Q 003669 638 MMRDGRTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 638 A~~~~~~~It~edi~~Al~~~~~g 661 (804)
|...|+..++.+|+. .+.-+.+.
T Consensus 264 A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 264 AFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHCCCCCCCHHHHH-HhHHHhcc
Confidence 999999999999999 56555544
No 167
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.83 E-value=2.5e-08 Score=115.56 Aligned_cols=185 Identities=24% Similarity=0.244 Sum_probs=112.6
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccc----------------------------eeeeccchhhhhhhccchhhHHHHHH
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVN----------------------------FFSISASQFVEIYVGVGASRVRSLYQ 504 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~----------------------------~~~i~~s~~~~~~~g~~~~~l~~lf~ 504 (804)
.++|+||||+|||+|++.+++.+.+. |....++......+|.+...-...+.
T Consensus 213 ~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~ 292 (499)
T TIGR00368 213 NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEIS 292 (499)
T ss_pred EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhh
Confidence 38999999999999999999754321 11111110000111111000000111
Q ss_pred HHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCC------C
Q 003669 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRP------D 567 (804)
Q Consensus 505 ~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~------~ 567 (804)
....+++||||++.+... ++..|++.|+... -..++.+|+++|.- +
T Consensus 293 ---lA~~GvLfLDEi~e~~~~--------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~ 355 (499)
T TIGR00368 293 ---LAHNGVLFLDELPEFKRS--------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGG 355 (499)
T ss_pred ---ccCCCeEecCChhhCCHH--------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCC
Confidence 223469999999987554 6777777665421 12468899999852 1
Q ss_pred -----------------CCCccccCCCcccccccCCCCCHHH-------------HHHHHHH------HHccC---CCCC
Q 003669 568 -----------------ILDPALVRPGRFDRKIFIPKPGLIG-------------RMEILKV------HARKK---PMAD 608 (804)
Q Consensus 568 -----------------~LdpaLlrpgRfd~~I~~~~Pd~~e-------------R~~Il~~------~l~~~---~l~~ 608 (804)
.+..+|+. |||.++.++.++..+ |..+.+. .+... ....
T Consensus 356 ~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~ 433 (499)
T TIGR00368 356 KNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNA 433 (499)
T ss_pred CcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 47778888 999999998765432 2233221 11111 1111
Q ss_pred h----------------hcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 003669 609 D----------------VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 609 ~----------------~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (804)
. .++..-+....++|.|....+++-|..+|-.++...|+.+|+.+|+.
T Consensus 434 ~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 434 DLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 0 11112223345689999999999999999999999999999999974
No 168
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.4e-08 Score=108.64 Aligned_cols=83 Identities=29% Similarity=0.451 Sum_probs=63.4
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc--------cCCCceEEEeec----CCCCCCCccccCCCcc
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIAST----NRPDILDPALVRPGRF 579 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~--------~~~~~viVIatT----N~~~~LdpaLlrpgRf 579 (804)
+|+||||||+++...+ .++++-.+..+...||-.+++. ...++++||++. ..|..|-|.| .|||
T Consensus 252 GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPEL--QGRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPEL--QGRF 327 (444)
T ss_pred CeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhh--cCCC
Confidence 5999999999987643 1222455566888888888763 245679999877 4577888888 4699
Q ss_pred cccccCCCCCHHHHHHHHH
Q 003669 580 DRKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 580 d~~I~~~~Pd~~eR~~Il~ 598 (804)
+..+.+...+.++-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999998888874
No 169
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.82 E-value=1.4e-08 Score=121.65 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=90.3
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhh
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (804)
++.+..+ ..+++..|.|+|+.|..+++... .....+++.+++++++++..+++ . ..+ ..++. ....
T Consensus 220 ~d~i~~L-~~G~i~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~-~~a----~~~~~-~~r~---- 285 (635)
T PRK11147 220 ATRIVDL-DRGKLVSYPGNYDQYLLEKEEAL--RVEELQNAEFDRKLAQEEVWIRQ-G-IKA----RRTRN-EGRV---- 285 (635)
T ss_pred cCeEEEE-ECCEEEEecCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-h-hhh----hhhhH-HHHH----
Confidence 4455555 46788889999999998777432 22233344444455555554443 1 000 01100 0000
Q ss_pred hhhHHHHHHHHhcCCCCcccccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHH
Q 003669 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLL 467 (804)
Q Consensus 390 ~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtL 467 (804)
+..+.+... .+. +........+.|+.....++.++.++++...|.+...+.++++.+.+| +.|+||||+|||||
T Consensus 286 --~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTL 361 (635)
T PRK11147 286 --RALKALRRE-RSE-RREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTL 361 (635)
T ss_pred --HHHHHhhhh-hcc-ccccCCceeEEeCCCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHH
Confidence 000111100 000 000012233445443334555667777777776667889999999988 88999999999999
Q ss_pred HHHHhhhhccceeeeccc
Q 003669 468 AKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 468 akaLA~el~~~~~~i~~s 485 (804)
+++|+|.+.+..+.+..+
T Consensus 362 lk~l~G~~~p~~G~i~~~ 379 (635)
T PRK11147 362 LKLMLGQLQADSGRIHCG 379 (635)
T ss_pred HHHHhCCCCCCCcEEEEC
Confidence 999999887766666543
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.5e-08 Score=108.33 Aligned_cols=172 Identities=15% Similarity=0.246 Sum_probs=114.1
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc--------ceeeeccchh
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--------NFFSISASQF 487 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~--------~~~~i~~s~~ 487 (804)
.|+++.|.+.++..+.+.+. .-+++..++|+||.|+|||++++.+|..+-. .+..+...+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 47788888877766665543 1245667899999999999999999986521 2222221100
Q ss_pred hhhhhccchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeec
Q 003669 488 VEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (804)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatT 563 (804)
.......++.+.+.+.. ....|++||++|.+... ..+.|+..+++ ...++++|.+|
T Consensus 71 ----~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 71 ----KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred ----CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHHHHhcC--CCCCeEEEEEe
Confidence 00122345555554432 23459999999888544 68899999994 45677777777
Q ss_pred CCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcH
Q 003669 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (804)
Q Consensus 564 N~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg 624 (804)
+.++.+.|.++++| ..+.|++|+.++....+...+.. . +......++..+.|-.+
T Consensus 131 ~~~~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKSRC---QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHhhc---eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 78899999999844 38999999999888877765531 2 22334556666665443
No 171
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.4e-08 Score=106.27 Aligned_cols=99 Identities=32% Similarity=0.527 Sum_probs=71.5
Q ss_pred ccCCc-EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh-hhccchhhH-HHHHHHHH----hcCCceeehhHHHH
Q 003669 449 RIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEAK----DNAPSVVFIDELDA 521 (804)
Q Consensus 449 ~i~~g-vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~-~~g~~~~~l-~~lf~~a~----~~~p~Il~IDEId~ 521 (804)
.+.++ +||+||+|+|||.||+.||..+++||...++..+.+. |+|....++ ..+++.+. +...+|++|||||+
T Consensus 94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 34443 9999999999999999999999999999999888765 888877665 33444321 22345999999999
Q ss_pred hhhhcCCCC---CCCcchhHHHHHHHHHhhhc
Q 003669 522 VGRERGLIK---GSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 522 l~~~r~~~~---~sgge~~~~~l~~LL~~ld~ 550 (804)
+.......+ +-.|+ .+...||..+++
T Consensus 174 IarkSeN~SITRDVSGE---GVQQALLKiiEG 202 (408)
T COG1219 174 IARKSENPSITRDVSGE---GVQQALLKIIEG 202 (408)
T ss_pred hhccCCCCCcccccCch---HHHHHHHHHHcC
Confidence 976532221 12233 366777777776
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=5.4e-08 Score=108.82 Aligned_cols=179 Identities=21% Similarity=0.214 Sum_probs=115.7
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce----e-------e
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----F-------S 481 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~----~-------~ 481 (804)
....++++.|.+.++..+.+.+.. -++|.++||+||+|+||++++.++|..+-..- . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 345677888888887666655542 25677899999999999999999998662110 0 0
Q ss_pred e----ccchhhhh---------hh-----cc--------chhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCC
Q 003669 482 I----SASQFVEI---------YV-----GV--------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKG 531 (804)
Q Consensus 482 i----~~s~~~~~---------~~-----g~--------~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~ 531 (804)
+ .|...... ++ +. ....++.+.+.+. ...|-|++|||+|.+...
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------ 156 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------ 156 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH------
Confidence 0 01000000 00 10 1123444444433 234679999999988654
Q ss_pred CCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhc
Q 003669 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD 611 (804)
Q Consensus 532 sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~d 611 (804)
..+.|+..+++ ...++++|.+|+.++.+.|.+++ |.. .+.|++|+.++..+++...... ..+..
T Consensus 157 --------aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 157 --------AANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred --------HHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 78889988883 44567888888889899999988 543 8899999999999988876421 12222
Q ss_pred HHHHHhhCCCCcH
Q 003669 612 YLAVASMTDGMVG 624 (804)
Q Consensus 612 l~~la~~t~G~sg 624 (804)
+..++..+.|-.+
T Consensus 221 ~~~l~~~s~Gsp~ 233 (365)
T PRK07471 221 RAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHcCCCHH
Confidence 2456666666443
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=3.4e-08 Score=109.01 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=104.3
Q ss_pred cccCCcEEEECCCCCChhHHHHHHhhhhccc--eeeeccch------hhh-----h-hh-------ccchhhHHHHHHHH
Q 003669 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQ------FVE-----I-YV-------GVGASRVRSLYQEA 506 (804)
Q Consensus 448 l~i~~gvLL~Gp~GtGKTtLakaLA~el~~~--~~~i~~s~------~~~-----~-~~-------g~~~~~l~~lf~~a 506 (804)
-+++.+++|+||+|+|||++|+.+|..+... ...-.|+. +.. . ++ .-....++.+.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 3567789999999999999999999876321 10001111 000 0 00 01224556666655
Q ss_pred Hh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccccc
Q 003669 507 KD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 582 (804)
Q Consensus 507 ~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~ 582 (804)
.. ....|++||++|.+... ..|.||..+++ ...++++|.+|+.++.+.|.+++ |.. .
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 43 23458999999998655 78999999994 55788999999999999999999 554 6
Q ss_pred ccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcH
Q 003669 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (804)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg 624 (804)
+.|++|+.++..+.+..... ...+.+...++....|-.+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 89999999988888876532 1223334455666666444
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=5.6e-08 Score=117.79 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=124.8
Q ss_pred CcccCCc-EEEEC--CCCCChhHHHHHHhhhh-----ccceeeeccchhhhhhhccchhhHHHHHHHHHhcC------Cc
Q 003669 447 GVRIPGG-ILLCG--PPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA------PS 512 (804)
Q Consensus 447 gl~i~~g-vLL~G--p~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~------p~ 512 (804)
++.+|+- -+..| |++.||||+|++||+++ +.+++.+++++... ...++.+...+.... +.
T Consensus 559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCE
Confidence 3444442 45668 99999999999999987 45789999887322 123455554433222 35
Q ss_pred eeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHH
Q 003669 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 592 (804)
Q Consensus 513 Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~e 592 (804)
|++|||+|.+... ..+.|+..|+. ...++.+|++||.+..+.+++++ |+ ..+.|++|+.++
T Consensus 633 VvIIDEaD~Lt~~--------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~ 693 (846)
T PRK04132 633 IIFLDEADALTQD--------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDED 693 (846)
T ss_pred EEEEECcccCCHH--------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHH
Confidence 9999999998654 67889988884 45678899999999999999998 54 388999999999
Q ss_pred HHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 593 RMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 593 R~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
....++..+...++. ++..+..++..+.|- .+...++++.++. . ...||.+++..+
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~~~---~--~~~It~~~V~~~ 750 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEGD-MRRAINILQAAAA---L--DDKITDENVFLV 750 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHH---h--cCCCCHHHHHHH
Confidence 998888877654443 344577788888773 3444455554432 1 235788777654
No 175
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=7.2e-08 Score=107.29 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=116.6
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhcc-------ceeee-cc-
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSI-SA- 484 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-------~~~~i-~~- 484 (804)
...++.+.|.+.++..+..++.. -+.|..++|+||+|+||||+++.+|..+.. +.... .+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 44667778888777666655442 245667999999999999999999987633 11100 11
Q ss_pred --chhhhh---------hhc----c---------chhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCCCCCCcch
Q 003669 485 --SQFVEI---------YVG----V---------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQE 536 (804)
Q Consensus 485 --s~~~~~---------~~g----~---------~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~~~sgge~ 536 (804)
...... ++. . ....++.+.+.+. .....|++|||+|.+...
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~----------- 156 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN----------- 156 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------
Confidence 100000 010 0 0123344433332 234569999999998654
Q ss_pred hHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHH
Q 003669 537 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 616 (804)
Q Consensus 537 ~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la 616 (804)
..+.||..+++ ...++++|..|+.++.+.|.+++ |+ ..+.|++|+.++..+++........+ ++.....++
T Consensus 157 ---aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 157 ---AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred ---HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 67889999985 44566666667888889999988 65 49999999999999999874322221 122245556
Q ss_pred hhCCCCcHHHHHHHHH
Q 003669 617 SMTDGMVGAELANIVE 632 (804)
Q Consensus 617 ~~t~G~sg~DL~~Lv~ 632 (804)
..+.| +++...++++
T Consensus 228 ~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 228 QRSKG-SVRKALLLLN 242 (351)
T ss_pred HHcCC-CHHHHHHHHh
Confidence 66655 3443334443
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.76 E-value=7.6e-08 Score=111.23 Aligned_cols=185 Identities=24% Similarity=0.267 Sum_probs=113.3
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceee--eccch------------------hhhh--------hhccchhhHHHHHHH
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ------------------FVEI--------YVGVGASRVRSLYQE 505 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~--i~~s~------------------~~~~--------~~g~~~~~l~~lf~~ 505 (804)
++|+||||+|||+|++.|++.+.+..+. +.... |... .+|.+...-...+..
T Consensus 213 llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~ 292 (506)
T PRK09862 213 LLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISL 292 (506)
T ss_pred EEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhh
Confidence 9999999999999999999866432211 11111 1100 122111000112222
Q ss_pred HHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-------
Q 003669 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD------- 567 (804)
Q Consensus 506 a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~------- 567 (804)
....++|+||++.+... ++..|++.|+.-. -..++.+|+|+|...
T Consensus 293 ---A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~ 355 (506)
T PRK09862 293 ---AHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN 355 (506)
T ss_pred ---ccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCC
Confidence 22359999999887543 6777777665311 134689999999752
Q ss_pred --------------CCCccccCCCcccccccCCCCCHHH----------HHHHHH-------HH-Hc----cCCCCC---
Q 003669 568 --------------ILDPALVRPGRFDRKIFIPKPGLIG----------RMEILK-------VH-AR----KKPMAD--- 608 (804)
Q Consensus 568 --------------~LdpaLlrpgRfd~~I~~~~Pd~~e----------R~~Il~-------~~-l~----~~~l~~--- 608 (804)
.++.+++. |||..+.++.|+.++ ...|-+ .. .+ +..+..
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l 433 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEI 433 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHH
Confidence 36678888 999999998874321 111211 00 00 000110
Q ss_pred -------h--hcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 609 -------D--VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 609 -------~--~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
. ..+..-+....|.|.|....+++.|...|..+++..|+.+|+.+|+..
T Consensus 434 ~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 434 RQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 0 011112234567899999999999999999999999999999999864
No 177
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.75 E-value=8.9e-08 Score=104.63 Aligned_cols=129 Identities=32% Similarity=0.447 Sum_probs=90.6
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhc------------------------cceeeeccchhhhhhhccchhhHHHHHH
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 504 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~------------------------~~~~~i~~s~~~~~~~g~~~~~l~~lf~ 504 (804)
+.|..+||+||||+|||+++.++|+.+. +.+..++.++....- .....++.+-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4455699999999999999999999886 455666655432210 12233444444
Q ss_pred HHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccc
Q 003669 505 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (804)
Q Consensus 505 ~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd 580 (804)
..... ..-|++|||+|.+..+ ..+.++..++ ....++.+|.+||.+..+-|.+.++++
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~SRc~-- 161 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE--EPPKNTRFILITNDPSKILPTIRSRCQ-- 161 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhhcce--
Confidence 33322 3469999999999765 7788888888 566788999999999999999998443
Q ss_pred ccccCCCCCHHHHHHHHH
Q 003669 581 RKIFIPKPGLIGRMEILK 598 (804)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~ 598 (804)
.+.|++|+........+
T Consensus 162 -~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 162 -RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -eeecCCchHHHHHHHhh
Confidence 77787755544444333
No 178
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.73 E-value=2.9e-08 Score=112.19 Aligned_cols=120 Identities=31% Similarity=0.463 Sum_probs=74.6
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhhcc--c-----eeeecc----chhhhhh----hccc--hhhHHHHHHHHHhc--CC
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEAGV--N-----FFSISA----SQFVEIY----VGVG--ASRVRSLYQEAKDN--AP 511 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el~~--~-----~~~i~~----s~~~~~~----~g~~--~~~l~~lf~~a~~~--~p 511 (804)
.++++|+||||||||++|+.+|..+.. . ++.+.. .+++..+ +|.. .+.+..+...|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 345899999999999999999987632 1 122221 1222111 1111 11233445566543 47
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh--------------------cccCCCceEEEeecCCCC----
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD--------------------GFEGRGNVITIASTNRPD---- 567 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld--------------------~~~~~~~viVIatTN~~~---- 567 (804)
++++||||+.....+ ++..++..|+ .+.-..|+.||+|+|..+
T Consensus 274 ~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999998865442 2222222222 244567899999999987
Q ss_pred CCCccccCCCcccccccCC
Q 003669 568 ILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~~~ 586 (804)
.+|.||+| ||. .|.+.
T Consensus 341 ~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIE 356 (459)
T ss_pred hccHHHHh--hhh-eEEec
Confidence 89999999 886 45554
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=1.8e-07 Score=108.71 Aligned_cols=167 Identities=25% Similarity=0.355 Sum_probs=106.7
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHH----hcCCceeehhHHHHhhhhcCCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLI 529 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~----~~~p~Il~IDEId~l~~~r~~~ 529 (804)
+||+||||.||||||+.+|+.+|..++.|+.++-...-. ....+..+.+.-. ...|..+++||||....
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~----- 401 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR----- 401 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCCcH-----
Confidence 889999999999999999999999999999987433211 1111222222111 13466799999986432
Q ss_pred CCCCcchhHHHHHHHHHhhhcc------cCC----------C---ceEEEeecCCCCCCCccccCCCcccccccCCCCCH
Q 003669 530 KGSGGQERDATLNQLLVCLDGF------EGR----------G---NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (804)
Q Consensus 530 ~~sgge~~~~~l~~LL~~ld~~------~~~----------~---~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~ 590 (804)
..++.++..+..- ... . .--||+.+|. ..-|+|+.---|-.+|.|.+|..
T Consensus 402 ---------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 402 ---------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred ---------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCCh
Confidence 1344444444310 000 0 1357788885 44566642113778999999998
Q ss_pred HHHHHHHHHHHccCCCCCh-hcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 003669 591 IGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (804)
Q Consensus 591 ~eR~~Il~~~l~~~~l~~~-~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~ 642 (804)
....+=|+..+...++..+ ..+..|+..| ..||++++|.-...+....
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFLASNVD 519 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhcc
Confidence 8877777777766655432 2345555555 4599999999888776543
No 180
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.65 E-value=2.6e-07 Score=109.77 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=66.8
Q ss_pred ceEEEeecCCC--CCCCccccCCCccc---ccccCC---CCCHHHHHHHHHH---HHccCCCCChhcHH---HHH---hh
Q 003669 556 NVITIASTNRP--DILDPALVRPGRFD---RKIFIP---KPGLIGRMEILKV---HARKKPMADDVDYL---AVA---SM 618 (804)
Q Consensus 556 ~viVIatTN~~--~~LdpaLlrpgRfd---~~I~~~---~Pd~~eR~~Il~~---~l~~~~l~~~~dl~---~la---~~ 618 (804)
++.+|+++|.. ..++|.|+. ||+ ..+.|+ +++.+.+.++++. .++..+..+.++.+ .+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67889998864 578999998 998 555553 2345556555443 33333222233322 222 11
Q ss_pred CC------CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 003669 619 TD------GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 619 t~------G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (804)
.. ..+.++|.++++.|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 245799999999998888888888999999999987554
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.9e-07 Score=109.77 Aligned_cols=204 Identities=22% Similarity=0.361 Sum_probs=132.0
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh----------ccceeee
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el----------~~~~~~i 482 (804)
..-.++.+.|-++.+..+ +..+... -..+-+|+|+||+|||.++..||... +..++++
T Consensus 165 r~gklDPvIGRd~EI~r~---iqIL~RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRT---IQILSRR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHH---HHHHhcc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 344566777766555433 3333211 11235899999999999999998754 4567888
Q ss_pred ccchhhhh--hhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 483 SASQFVEI--YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 483 ~~s~~~~~--~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
+++.++.. |-|..+.+++.+.+.+....+.|+||||||.+.+.... +|+ .-..-|.|--.+. ++.+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~---~G~--a~DAaNiLKPaLA----RGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT---EGG--AMDAANLLKPALA----RGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc---ccc--ccchhhhhHHHHh----cCCeEEE
Confidence 88887754 88999999999999999888889999999999665221 111 1223333333332 5667788
Q ss_pred eecCCCC-----CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-----ChhcHHHHHh-----hCCCCcHH
Q 003669 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-----DDVDYLAVAS-----MTDGMVGA 625 (804)
Q Consensus 561 atTN~~~-----~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-----~~~dl~~la~-----~t~G~sg~ 625 (804)
++|...+ .-|+||-| ||. .|.+..|+.++-..||+..-...... .+.-+...+. .+.-+-+.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPD 380 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPD 380 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCc
Confidence 7775332 45899999 998 88999999999999998554332111 1111222222 22334444
Q ss_pred HHHHHHHHHHHHHHH
Q 003669 626 ELANIVEVAAINMMR 640 (804)
Q Consensus 626 DL~~Lv~~A~~~A~~ 640 (804)
---.++.+|+.....
T Consensus 381 KAIDLiDeA~a~~~l 395 (786)
T COG0542 381 KAIDLLDEAGARVRL 395 (786)
T ss_pred hHHHHHHHHHHHHHh
Confidence 445677777655443
No 182
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.64 E-value=4e-07 Score=95.90 Aligned_cols=131 Identities=22% Similarity=0.261 Sum_probs=91.6
Q ss_pred cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC-------------CCCCCccccC
Q 003669 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-------------PDILDPALVR 575 (804)
Q Consensus 509 ~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~-------------~~~LdpaLlr 575 (804)
.-|.++||||++-+.-. .+..|-..++.-. .-+||.+||+ |..+++.|+.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 34789999999877443 4555555555321 2255666663 4566777776
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 576 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 576 pgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
|+- +|..-+++.++.++|++.+.....+. ++..+..++.....-|-+-...|+.-|...|...++..|..+|+.++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 543 55666788999999999888766554 33346667776666667777788888888888899999999999988
Q ss_pred HHHHH
Q 003669 655 AQIEE 659 (804)
Q Consensus 655 l~~~~ 659 (804)
-....
T Consensus 435 ~~Lf~ 439 (456)
T KOG1942|consen 435 TELFL 439 (456)
T ss_pred HHHHH
Confidence 66543
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=4.2e-07 Score=99.80 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=114.3
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc-----------------
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------------- 478 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~----------------- 478 (804)
.|+++.|.+.++..+...+.. -+++..+||+||.|+||++++.++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 477788888888777666542 2456779999999999999999999865211
Q ss_pred -eeeeccchhhh------hh---hc--------cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcch
Q 003669 479 -FFSISASQFVE------IY---VG--------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQE 536 (804)
Q Consensus 479 -~~~i~~s~~~~------~~---~g--------~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~ 536 (804)
+..+....... .+ .| -....++.+.+.+.. ....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 11111100000 00 00 001234555554433 23468889998887544
Q ss_pred hHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHH
Q 003669 537 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 616 (804)
Q Consensus 537 ~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la 616 (804)
..+.||..|++.. ++++|..|+.++.|-|.+++ |. ..+.|++|+.++..+++......... +.+...++
T Consensus 140 ---aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 140 ---AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred ---HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 7889999998543 45677777888999999999 44 38999999999999998876432211 22245666
Q ss_pred hhCCCCcHH
Q 003669 617 SMTDGMVGA 625 (804)
Q Consensus 617 ~~t~G~sg~ 625 (804)
....|-.+.
T Consensus 209 ~~a~Gs~~~ 217 (314)
T PRK07399 209 ALAQGSPGA 217 (314)
T ss_pred HHcCCCHHH
Confidence 666664443
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2.6e-07 Score=101.55 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=101.3
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc--eeeeccchh------hhh------hh----c--cchhhHHHHHHHHHh
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQF------VEI------YV----G--VGASRVRSLYQEAKD 508 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~--~~~i~~s~~------~~~------~~----g--~~~~~l~~lf~~a~~ 508 (804)
+++.+++|+||.|+||+++|+.+|..+-.. ...-.|+.- ... ++ | -+...+|.+.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 466789999999999999999999865221 100111110 000 01 1 123345665555443
Q ss_pred ----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccccccc
Q 003669 509 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 584 (804)
Q Consensus 509 ----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~ 584 (804)
...-|++||++|.+... ..|.||..++ .+..++++|.+|+.++.+.|.+++++ . .+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~SRC--~-~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLE--EPRPNTYFLLQADLSAALLPTIYSRC--Q-TWL 162 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHhhc--e-EEe
Confidence 23458999999998654 7899999999 56778899999999999999999844 3 788
Q ss_pred CCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcH
Q 003669 585 IPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (804)
Q Consensus 585 ~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg 624 (804)
|++|+.++..+.+..... .+......++..+.|-.+
T Consensus 163 ~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 999999888877775432 122233444555555443
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=5.4e-07 Score=106.80 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=118.0
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccceee-ec---cc
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS-IS---AS 485 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~-i~---~s 485 (804)
+......++++.+..+.+..+..++.... ++......++|+||+||||||+++++|+.++..+.. ++ +.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 44566778888888877776665554321 111111238999999999999999999988765433 11 10
Q ss_pred hhhhhh------------hccchhhHHHHHHHHHh----------cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 486 QFVEIY------------VGVGASRVRSLYQEAKD----------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 486 ~~~~~~------------~g~~~~~l~~lf~~a~~----------~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
.....| +......+..++..+.. ....||+||||+.+.... ...+..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-----------~~~lq~ 217 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-----------TRALHE 217 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-----------HHHHHH
Confidence 000000 01112233444444431 234599999998764321 113444
Q ss_pred HHH-hhhcccCCCceEEEeecC-CCC--------------CCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCC-
Q 003669 544 LLV-CLDGFEGRGNVITIASTN-RPD--------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM- 606 (804)
Q Consensus 544 LL~-~ld~~~~~~~viVIatTN-~~~--------------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l- 606 (804)
+|. ... ..+.+.+|++++ .+. .|.+++++..|.. +|.|++.+.....+.|+..+.....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 444 221 223333443332 111 1336776533443 6899999999977777766654311
Q ss_pred -------CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHH-------cCCCCcCHHHHHHHH
Q 003669 607 -------ADDVDYLAVASMTDGMVGAELANIVEVAAINMMR-------DGRTEITTDDLLQAA 655 (804)
Q Consensus 607 -------~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~-------~~~~~It~edi~~Al 655 (804)
.....+..++.... +|++.+++.-...+.+ .+...++..++..+.
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred cccccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 11234556666544 4777766655443322 223345555555443
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2e-07 Score=103.05 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=89.4
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccce--eeeccc------hhhh-----h-hh---cc--chhhHHHHHHHHHh-
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISAS------QFVE-----I-YV---GV--GASRVRSLYQEAKD- 508 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~--~~i~~s------~~~~-----~-~~---g~--~~~~l~~lf~~a~~- 508 (804)
++|..++|+||+|+||+++++.+|..+-..- ....|+ .+.. . ++ |. ....++.+.+.+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC
Confidence 5667799999999999999999998752210 000010 0000 0 00 11 12344555554432
Q ss_pred ---cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccC
Q 003669 509 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 585 (804)
Q Consensus 509 ---~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~ 585 (804)
...-|++|||+|.+... ..+.||..|+ ....++++|.+|+.+..+.|.++++++ .+.|
T Consensus 106 ~~~~~~kvviI~~a~~~~~~--------------a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrSRc~---~i~~ 166 (329)
T PRK08058 106 GVESNKKVYIIEHADKMTAS--------------AANSLLKFLE--EPSGGTTAILLTENKHQILPTILSRCQ---VVEF 166 (329)
T ss_pred CcccCceEEEeehHhhhCHH--------------HHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHhhce---eeeC
Confidence 23459999999988654 7899999999 455678888888888899999998543 8899
Q ss_pred CCCCHHHHHHHHHH
Q 003669 586 PKPGLIGRMEILKV 599 (804)
Q Consensus 586 ~~Pd~~eR~~Il~~ 599 (804)
.+|+.++..+++..
T Consensus 167 ~~~~~~~~~~~L~~ 180 (329)
T PRK08058 167 RPLPPESLIQRLQE 180 (329)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888777753
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.4e-07 Score=101.30 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=102.7
Q ss_pred cccCCcEEEECCCCCChhHHHHHHhhhhcc--ceeeeccchh------hhh------hh---c----cchhhHHHHHHHH
Q 003669 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQF------VEI------YV---G----VGASRVRSLYQEA 506 (804)
Q Consensus 448 l~i~~gvLL~Gp~GtGKTtLakaLA~el~~--~~~~i~~s~~------~~~------~~---g----~~~~~l~~lf~~a 506 (804)
-+++.++||+||.|+||+++|.++|..+-. +.....|+.- ... ++ + -....++.+.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 356778999999999999999999986621 1111112110 000 00 0 1223455555554
Q ss_pred Hh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccccc
Q 003669 507 KD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 582 (804)
Q Consensus 507 ~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~ 582 (804)
.. ...-|++||++|.+... ..|.||..|+ .+..++++|..|+.++.|.|.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 43 33459999999998655 7899999999 567789999999999999999999 544 6
Q ss_pred ccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHH
Q 003669 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 625 (804)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~ 625 (804)
+.|++|+.++..+.+.... +.. ......++..+.|-.+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHH
Confidence 8999999888777665321 222 22344556666664443
No 188
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=1.3e-08 Score=96.25 Aligned_cols=103 Identities=29% Similarity=0.435 Sum_probs=58.6
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeeccch-hhh-hhhc-----cchhhH----HHHHHHHHhcCCceeehhHHHHh
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FVE-IYVG-----VGASRV----RSLYQEAKDNAPSVVFIDELDAV 522 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~-~~~-~~~g-----~~~~~l----~~lf~~a~~~~p~Il~IDEId~l 522 (804)
+||.|+||+|||++++++|+.++..|.+|.+.. +.- ...| .....+ .-+| ..|+++|||...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNra 74 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINRA 74 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGGS
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeecccccC
Confidence 799999999999999999999999999988753 221 1111 111110 1122 248999999887
Q ss_pred hhhcCCCCCCCcchhHHHHHHHHHhhhcc---------cCCCceEEEeecCCCC-----CCCccccCCCcc
Q 003669 523 GRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRF 579 (804)
Q Consensus 523 ~~~r~~~~~sgge~~~~~l~~LL~~ld~~---------~~~~~viVIatTN~~~-----~LdpaLlrpgRf 579 (804)
.++ +++.||+.|.+. .-...++||+|-|..+ .|+.+++. ||
T Consensus 75 ppk--------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PPK--------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HH--------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CHH--------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 665 778888777642 1234688999999866 56667766 55
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.1e-07 Score=101.52 Aligned_cols=141 Identities=23% Similarity=0.390 Sum_probs=98.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh-hccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY-VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK 530 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~-~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~ 530 (804)
.++||.||+|+|||+||-.+|...+.||+.+-..+-+-.+ -......+..+|+.|.+.+-+++++|+|+.+..--
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v---- 614 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV---- 614 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc----
Confidence 3499999999999999999999999999987544322111 11122456889999999988999999999986421
Q ss_pred CCCcchhHHHHHHHHHhhhcccCCC-ceEEEeecCCCCCCCc-cccCCCcccccccCCCCCH-HHHHHHHH
Q 003669 531 GSGGQERDATLNQLLVCLDGFEGRG-NVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGL-IGRMEILK 598 (804)
Q Consensus 531 ~sgge~~~~~l~~LL~~ld~~~~~~-~viVIatTN~~~~Ldp-aLlrpgRfd~~I~~~~Pd~-~eR~~Il~ 598 (804)
.-|-...+.++..|+..+......+ +.+|++||...+.|.. .++. .|+..|.+|..+. ++..+++.
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 1233445667888888887666555 4666677765543322 3444 7888999987765 55555554
No 190
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.55 E-value=1.2e-06 Score=106.05 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=74.0
Q ss_pred cEEEECCCCCChhHHHHHHhhhhc-------cceeeeccchhhhhhhccchhhHHHHHH--HHHhcCCceeehhHHHHhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFVEIYVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVG 523 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~-------~~~~~i~~s~~~~~~~g~~~~~l~~lf~--~a~~~~p~Il~IDEId~l~ 523 (804)
.|||+|.||||||++++.++.... .++..+.+..... +.+...+.. .++ .+.....++++|||++++.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhCC
Confidence 499999999999999999987542 2222332222211 010000000 000 0011224589999999985
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-------------CCCccccCCCcc
Q 003669 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRF 579 (804)
Q Consensus 524 ~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-------------~LdpaLlrpgRf 579 (804)
.. ....|+..|+.-. -+.++.||+|+|+.. .|+++|++ ||
T Consensus 571 ~~--------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 571 NE--------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred HH--------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 44 4555665554311 135689999999752 56789999 99
Q ss_pred ccccc-CCCCCHHHHHHH
Q 003669 580 DRKIF-IPKPGLIGRMEI 596 (804)
Q Consensus 580 d~~I~-~~~Pd~~eR~~I 596 (804)
|.++. ++.|+.+.-..|
T Consensus 635 DLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cEEEEecCCCChHHHHHH
Confidence 97754 466766554444
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.5e-07 Score=104.03 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=90.0
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccce--e-eeccchhh-----h-h------hhc--------------------
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--F-SISASQFV-----E-I------YVG-------------------- 493 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~--~-~i~~s~~~-----~-~------~~g-------------------- 493 (804)
++|.++||+||.|+||+++|+.+|..+.... . .-.|+.-. . . ++.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 7788899999999999999999998663211 0 01111100 0 0 000
Q ss_pred -------------cchhhHHHHHHHHHh----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCc
Q 003669 494 -------------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (804)
Q Consensus 494 -------------~~~~~l~~lf~~a~~----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~ 556 (804)
-....++.+.+.+.. ....|++||++|.+... ..|.||..++ ....+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCcC
Confidence 011233444433322 12336677777776543 7899999999 56778
Q ss_pred eEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHH
Q 003669 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 600 (804)
Q Consensus 557 viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~ 600 (804)
+++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 55 38999999999888888654
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=2e-06 Score=92.62 Aligned_cols=213 Identities=17% Similarity=0.243 Sum_probs=121.9
Q ss_pred cCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---------ccceeeeccchhhhh-
Q 003669 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI- 490 (804)
Q Consensus 421 ~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---------~~~~~~i~~s~~~~~- 490 (804)
.|.......++.+...+..+... -..+++|+|++|.|||++++..+..- ..|++.+.+...-+.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRH------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCccc------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 35555555555555544444211 12459999999999999999998633 235555554322111
Q ss_pred --h------hc------cchhh-HHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCC
Q 003669 491 --Y------VG------VGASR-VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRG 555 (804)
Q Consensus 491 --~------~g------~~~~~-l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~ 555 (804)
| .| ..... -..+..-.+...+.+++|||++.++... ..+++.+++. +..+.+.-
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-------~~~qr~~Ln~----LK~L~NeL 179 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-------YRKQREFLNA----LKFLGNEL 179 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-------HHHHHHHHHH----HHHHhhcc
Confidence 1 00 01111 1233455667778899999999976431 1223333333 33222333
Q ss_pred c--eEEEeecCCCC--CCCccccCCCcccccccCCCCCH-HHHHHHHHHHHccCCCC------ChhcHHHHHhhCCCCcH
Q 003669 556 N--VITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVHARKKPMA------DDVDYLAVASMTDGMVG 624 (804)
Q Consensus 556 ~--viVIatTN~~~--~LdpaLlrpgRfd~~I~~~~Pd~-~eR~~Il~~~l~~~~l~------~~~dl~~la~~t~G~sg 624 (804)
+ ++.++|..... .-|+.+-+ ||+ .+.+|.-.. ++-..++..+-...++. .......+-..+.|. .
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-i 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-I 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-h
Confidence 3 34444432111 34677766 887 555554332 33455665555444433 112224445567665 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 625 AELANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 625 ~DL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
+++..+++.|+..|++.|...||.+.+..+
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 578999999999999999999999998754
No 193
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.8e-07 Score=103.05 Aligned_cols=95 Identities=35% Similarity=0.575 Sum_probs=67.4
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh-hhccchhhH-HHHHHHHH----hcCCceeehhHHHHhhhhc
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEAK----DNAPSVVFIDELDAVGRER 526 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~-~~g~~~~~l-~~lf~~a~----~~~p~Il~IDEId~l~~~r 526 (804)
++||+||+|+|||.|++.||.-+++||.-.+|..+... |+|.....+ ..+++.|. +..-.|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 39999999999999999999999999999999987754 888765443 44444432 2234699999999997432
Q ss_pred CCC---CCCCcchhHHHHHHHHHhhhc
Q 003669 527 GLI---KGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 527 ~~~---~~sgge~~~~~l~~LL~~ld~ 550 (804)
... .+-+|+. +...||..+++
T Consensus 308 ~~i~~~RDVsGEG---VQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEG---VQQALLKLLEG 331 (564)
T ss_pred ccccccccccchh---HHHHHHHHhcc
Confidence 211 1223333 56666666665
No 194
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=5.3e-08 Score=101.54 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=41.6
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+...|.....+.++++.+..| +.|+||+|||||||++.|||-..+..+.|.
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 334455567788999999999 889999999999999999998776666543
No 195
>PLN03073 ABC transporter F family; Provisional
Probab=98.49 E-value=3.5e-07 Score=110.73 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=85.5
Q ss_pred cccccccccceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhh
Q 003669 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (804)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~ 389 (804)
++.+..+ ..+++..|.|+|+.|....+ ++.....++++.++++++.+++.+.+........ ...+. ..+. .
T Consensus 408 ~d~i~~l-~~g~i~~~~g~~~~~~~~~~--~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~--~~~~s--~~k~-l- 478 (718)
T PLN03073 408 VTDILHL-HGQKLVTYKGDYDTFERTRE--EQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRA--SLVQS--RIKA-L- 478 (718)
T ss_pred CCEEEEE-ECCEEEEeCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHhh--cchH-H-
Confidence 4556656 45788889999999987766 3334445555556666667776665432111000 00000 0000 0
Q ss_pred hhhHHHHHHHHhcCCCCcccccCccccccCcc-CchhHHHHHHHHHHhcc-ccccccccCcccCCc--EEEECCCCCChh
Q 003669 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKT 465 (804)
Q Consensus 390 ~~~i~~~vs~~tgipv~k~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~l~-~~~~~~~~gl~i~~g--vLL~Gp~GtGKT 465 (804)
+.+.... +... .....+.|+... ..+...+.++++...|. ....+.++++.+..| ++|+||||+|||
T Consensus 479 -----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKS 549 (718)
T PLN03073 479 -----DRLGHVD--AVVN--DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKS 549 (718)
T ss_pred -----HHHhhhh--cccc--CCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHH
Confidence 0000000 0000 000111222110 11223344555555563 345788999999888 899999999999
Q ss_pred HHHHHHhhhhccceeeecc
Q 003669 466 LLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 466 tLakaLA~el~~~~~~i~~ 484 (804)
||+++|+|.+.+..+.+..
T Consensus 550 TLLk~L~Gll~p~~G~I~~ 568 (718)
T PLN03073 550 TILKLISGELQPSSGTVFR 568 (718)
T ss_pred HHHHHHhCCCCCCCceEEE
Confidence 9999999988766665543
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.48 E-value=3.9e-06 Score=86.82 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=124.9
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 489 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~ 489 (804)
..+.+.++.|.+.++..+-+-...|.. | ....++||+|..|||||+|+|++.++. +..+++|+-.++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~-------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE-------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc-------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 457788889998887666544444321 1 122459999999999999999998866 56788887776543
Q ss_pred hhhccchhhHHHHHHHHHhcC-CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--CCCceEEEeecCCC
Q 003669 490 IYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNRP 566 (804)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~-p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--~~~~viVIatTN~~ 566 (804)
+-.+++..+..+ .-|+|.|++-.= .+. .....|-..||+-. ...||+|.+|+|+-
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSFe---------~gd----~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSFE---------EGD----DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCCC---------CCc----hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 234666666543 347888876211 111 13445555566533 34689999999986
Q ss_pred CCCCcc--------------------ccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh---hcHH--HHHhhCCC
Q 003669 567 DILDPA--------------------LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD---VDYL--AVASMTDG 621 (804)
Q Consensus 567 ~~Ldpa--------------------LlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~---~dl~--~la~~t~G 621 (804)
..++.. +--+.||+..+.|.+++.++-..|+..+++...+.-+ .+.. +.|....|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 655421 1113499999999999999999999999988766532 2222 23344456
Q ss_pred CcHHHHHHHHHH
Q 003669 622 MVGAELANIVEV 633 (804)
Q Consensus 622 ~sg~DL~~Lv~~ 633 (804)
-|||-.-+.++.
T Consensus 265 RSGR~A~QF~~~ 276 (287)
T COG2607 265 RSGRVAWQFIRD 276 (287)
T ss_pred CccHhHHHHHHH
Confidence 666655555443
No 197
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.48 E-value=1.3e-07 Score=96.75 Aligned_cols=46 Identities=39% Similarity=0.645 Sum_probs=33.1
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el 475 (804)
.|.++.|....+..+.-+.. | ..+++|+||||||||++++.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37788898888766653332 1 2469999999999999999999865
No 198
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=4.8e-07 Score=101.18 Aligned_cols=196 Identities=24% Similarity=0.278 Sum_probs=115.5
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhh---h-hccceeeeccchhhh
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAG---E-AGVNFFSISASQFVE 489 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~---e-l~~~~~~i~~s~~~~ 489 (804)
...+.+..|-......+.+-++.+. ..| ..|++.|++||||+.+|+.|.. . .+.||+.++|+.+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a------p~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA------PSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC------CCC----CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4456666776666666665555432 111 2389999999999999999864 2 367999999998876
Q ss_pred h-----hhccchh-------hHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc------
Q 003669 490 I-----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF------ 551 (804)
Q Consensus 490 ~-----~~g~~~~-------~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~------ 551 (804)
. .+|...+ .-..+|+.| ..+.+|+|||..+-.. ....|+..||..
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecC
Confidence 5 2222211 112355544 3358999999998654 566777777751
Q ss_pred ---cCCCceEEEeecCCC--CCCCc--cccCCCcccccccCCCCCHHHHHH----HHHHHH----ccCCCCChhc----H
Q 003669 552 ---EGRGNVITIASTNRP--DILDP--ALVRPGRFDRKIFIPKPGLIGRME----ILKVHA----RKKPMADDVD----Y 612 (804)
Q Consensus 552 ---~~~~~viVIatTN~~--~~Ldp--aLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l----~~~~l~~~~d----l 612 (804)
....+|.+|++||.. +.+-. .|.++ |+... +..|...+|.. +++.++ ++.......+ .
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~--I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILT--ITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCce--ecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 123578899888642 22222 33321 33334 44555555532 333333 3333332211 3
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003669 613 LAVASMTDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 613 ~~la~~t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
..+-.+.-.-+.++|.+++..++..+.
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 333344433477999999999987664
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.47 E-value=1.3e-06 Score=97.14 Aligned_cols=76 Identities=21% Similarity=0.372 Sum_probs=57.9
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc-----------ccCCCceEEEeecCCCC-CCCccccCCCcc
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----------FEGRGNVITIASTNRPD-ILDPALVRPGRF 579 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~-----------~~~~~~viVIatTN~~~-~LdpaLlrpgRf 579 (804)
+|+++||+..+... +++.||..+.. +....++++|+|+|+-. .|-|.|+. ||
T Consensus 146 GIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rf 209 (423)
T COG1239 146 GILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RF 209 (423)
T ss_pred CEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hh
Confidence 59999999776543 67777776654 22346799999999764 78888988 99
Q ss_pred cccccCCCC-CHHHHHHHHHHHHcc
Q 003669 580 DRKIFIPKP-GLIGRMEILKVHARK 603 (804)
Q Consensus 580 d~~I~~~~P-d~~eR~~Il~~~l~~ 603 (804)
+..|.+..| +.++|.+|++..+..
T Consensus 210 g~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 210 GLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred cceeeccCCCCHHHHHHHHHHHHHh
Confidence 999988654 678899999877654
No 200
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.47 E-value=6.6e-07 Score=105.36 Aligned_cols=206 Identities=21% Similarity=0.204 Sum_probs=120.5
Q ss_pred cccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh
Q 003669 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (804)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~ 490 (804)
...|+.+.|.......+.+.+..+.. ....|+|+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 34567777877777766666655431 12348999999999999999998764 569999999876432
Q ss_pred -----hhccchhhH-------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--C---
Q 003669 491 -----YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G--- 553 (804)
Q Consensus 491 -----~~g~~~~~l-------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--~--- 553 (804)
.+|...+.+ ...++. ...+++|||||+.+... ....|+..++... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC
Confidence 122211100 001222 23468999999998655 5667777665321 0
Q ss_pred ----CCceEEEeecCCC-------CCCCccccCCCcccccccCCCCCHHHH----HHHHHHHHccC----CCCChhc---
Q 003669 554 ----RGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGR----MEILKVHARKK----PMADDVD--- 611 (804)
Q Consensus 554 ----~~~viVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR----~~Il~~~l~~~----~l~~~~d--- 611 (804)
..++-+|++|+.. ..+.+.|.. |+. .+.+..|...+| ..+++.++... .....++
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1247788887653 122333333 333 333444444443 44555554322 1111222
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 003669 612 YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 612 l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (804)
+..|..+.-.-+.++|.++++.|+..+ ....|+.+|+-
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 444555544457788989988887543 34578888863
No 201
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=1.9e-06 Score=101.76 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=127.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhcc--ceeeeccchhhhhhhccchhhHHHHHHH---------HHhcCCceeehhHHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQE---------AKDNAPSVVFIDELD 520 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~--~~~~i~~s~~~~~~~g~~~~~l~~lf~~---------a~~~~p~Il~IDEId 520 (804)
+|++|.|+.|+|||+++++++.-+.. +|..+..+--....+|... +...+.. +......|+|+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 57999999999999999999998754 7777665554444454321 1111100 011123599999998
Q ss_pred HhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----------cCCCceEEEeecCCC---CCCCccccCCCcccccccCC
Q 003669 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 521 ~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-----------~~~~~viVIatTN~~---~~LdpaLlrpgRfd~~I~~~ 586 (804)
.+.+. +++.|++.|+.- .-..++++|++.|.. ..|+++++. ||+..+.++
T Consensus 104 ~~~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 104 RLEPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cCCHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 87655 889999888752 113568888875432 358889999 999999999
Q ss_pred CCCHHHH-------HHHHH--HHHccCCCCChhcHHHHHh--hCCCC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 003669 587 KPGLIGR-------MEILK--VHARKKPMADDVDYLAVAS--MTDGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (804)
Q Consensus 587 ~Pd~~eR-------~~Il~--~~l~~~~l~~~~dl~~la~--~t~G~-sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (804)
.|+..+. .+|.. ..+.+..+.+. .+..++. ...|. |.|--..+++.|...|..+++..|+.+|+.+|
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~A 246 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALA 246 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 8775532 12333 23333333222 2233222 23465 77777799999999999999999999999999
Q ss_pred HHHHH
Q 003669 655 AQIEE 659 (804)
Q Consensus 655 l~~~~ 659 (804)
+..+.
T Consensus 247 a~lvL 251 (584)
T PRK13406 247 ARLVL 251 (584)
T ss_pred HHHHH
Confidence 98776
No 202
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.46 E-value=1.1e-06 Score=102.66 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=122.3
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhh-----------hccceeeec
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE-----------AGVNFFSIS 483 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~e-----------l~~~~~~i~ 483 (804)
..|+++.|.......+.+.+..+... ...|+|+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 35777888887777777776654321 234899999999999999999766 357999999
Q ss_pred cchhhhh-----hhccchhhH--------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhc
Q 003669 484 ASQFVEI-----YVGVGASRV--------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (804)
Q Consensus 484 ~s~~~~~-----~~g~~~~~l--------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~ 550 (804)
|+.+.+. .+|...+.+ ..+|+.+ ..+.+|||||+.+... ....|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP--------------LQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH--------------HHHHHHhhhhc
Confidence 9976432 233221110 1244433 2358999999998655 56677776654
Q ss_pred cc---------CCCceEEEeecCCCCCCCccccCCCcccc-------cccCCCCCHHHHHH----HHHHHHcc----CC-
Q 003669 551 FE---------GRGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHARK----KP- 605 (804)
Q Consensus 551 ~~---------~~~~viVIatTN~~~~LdpaLlrpgRfd~-------~I~~~~Pd~~eR~~----Il~~~l~~----~~- 605 (804)
.. -..++-+|++||.. +. .+...|+|.. .+.+..|...+|.+ +++.++.. ..
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 11 11346788888753 21 1122233331 45566777776654 44455443 11
Q ss_pred -CCChhc------HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 003669 606 -MADDVD------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 606 -l~~~~d------l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi 651 (804)
+..+.- ...|..+.-.-+.++|.+++++++..+.......++.+++
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 222111 1233334444567899999998876533222245666655
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=9.2e-07 Score=97.10 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=101.3
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc----eeeeccchhhhh-------hh-------c------cchhhHHHHHH
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN----FFSISASQFVEI-------YV-------G------VGASRVRSLYQ 504 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~----~~~i~~s~~~~~-------~~-------g------~~~~~l~~lf~ 504 (804)
++|.+++|+||.|+||+++|.++|..+-.. .....+...+.. ++ | -....++.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 567789999999999999999999865211 000000000100 01 0 11234455555
Q ss_pred HHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccc
Q 003669 505 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (804)
Q Consensus 505 ~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd 580 (804)
.+... ..-|++||++|.+... ..|.||..++ ....+++||.+|+.++.|.|.+++ |..
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hhe
Confidence 54432 2359999999998654 7899999999 456688888889999999999999 443
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCcHHHH
Q 003669 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAEL 627 (804)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~sg~DL 627 (804)
.+.|++|+.++-.+.+... ... ..+...++....|..+.-+
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 7889999988777776532 222 2234456666666555433
No 204
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.43 E-value=2.2e-06 Score=94.81 Aligned_cols=167 Identities=20% Similarity=0.204 Sum_probs=97.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchhhH-------HHHHHHHHhcCCceeeh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~I 516 (804)
..|+|+|++||||+++|++|-... +.+|+.++|+.+... .+|...+.+ ..+|+.+ ..+.+||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 348999999999999999997644 469999999865332 222211100 1123322 3468999
Q ss_pred hHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCC-------CCCCccccCCCccc
Q 003669 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD 580 (804)
Q Consensus 517 DEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~-------~~LdpaLlrpgRfd 580 (804)
|||+.+... ....|+..++... ...++-+|++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 999998655 5666776665321 12457888888753 133445544 553
Q ss_pred ccccCCCCCHHHHHH----HHHHHHcc----CCCC--Chhc---HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 581 RKIFIPKPGLIGRME----ILKVHARK----KPMA--DDVD---YLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 581 ~~I~~~~Pd~~eR~~----Il~~~l~~----~~l~--~~~d---l~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
.+.+..|...+|.+ +++.++.. .+.. ..++ +..|..+.-.-+.++|.++++.++..+
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 34455555555543 44444322 1111 1222 344444443446788888888776543
No 205
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6.8e-07 Score=98.08 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=91.2
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccce-eeeccchh------hhh------hh-----c--cchhhHHHHHHHHHh
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-FSISASQF------VEI------YV-----G--VGASRVRSLYQEAKD 508 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-~~i~~s~~------~~~------~~-----g--~~~~~l~~lf~~a~~ 508 (804)
++|.+++|+||.|+||+++|+.+|..+-..- ....|+.- ... ++ | -....++.+.+.+..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 5677899999999999999999998652110 00011110 000 01 0 012344555444432
Q ss_pred ----cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCccccccc
Q 003669 509 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 584 (804)
Q Consensus 509 ----~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~ 584 (804)
...-|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++++ . .+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~SRC--q-~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNES--------------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVSRC--Q-QWV 163 (319)
T ss_pred CcccCCceEEEecchhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHhcc--e-eEe
Confidence 23469999999998654 7899999999 56678999999999999999999944 3 889
Q ss_pred CCCCCHHHHHHHHHH
Q 003669 585 IPKPGLIGRMEILKV 599 (804)
Q Consensus 585 ~~~Pd~~eR~~Il~~ 599 (804)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998887777754
No 206
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.40 E-value=1.7e-06 Score=101.05 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=122.8
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~- 490 (804)
..|+++.|.......+.+.+..+... ...|+|.|++||||+++|++|-... +.||+.++|+.+.+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 45777888888777777776654321 2348999999999999999997643 579999999876432
Q ss_pred ----hhccchhh--------HHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc------
Q 003669 491 ----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------ 552 (804)
Q Consensus 491 ----~~g~~~~~--------l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~------ 552 (804)
.+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCC
Confidence 23322111 11234433 2457999999998655 5667776665311
Q ss_pred ---CCCceEEEeecCCCC--CCCccccCCC---cccccccCCCCCHHHHHH----HHHHHHccC------CCCChhcHHH
Q 003669 553 ---GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK------PMADDVDYLA 614 (804)
Q Consensus 553 ---~~~~viVIatTN~~~--~LdpaLlrpg---Rfd~~I~~~~Pd~~eR~~----Il~~~l~~~------~l~~~~dl~~ 614 (804)
...++-+|++||..- .+....+++. |+. .+.+..|...+|.+ ++..++... .+.++. ...
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~~ 419 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQV 419 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HHH
Confidence 012456888886531 1221111110 332 34556666666653 444444332 122111 122
Q ss_pred -------HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 615 -------VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 615 -------la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
|..+.-.-+.++|.+++..++..+.......|+.+++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 444444456789999999887654322334688887643
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.39 E-value=2.1e-06 Score=95.02 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=53.4
Q ss_pred ccc-CccCchhHHHHHHHHHHhccccccccccCcccC-CcEEEECCCCCChhHHHHHHhhhhcc-------ceeeecc--
Q 003669 416 KFS-DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSISA-- 484 (804)
Q Consensus 416 ~f~-~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~-~gvLL~Gp~GtGKTtLakaLA~el~~-------~~~~i~~-- 484 (804)
.|+ ++.|+.+.+..+ +.++.... .|.... +.++|+||||+|||||+++|++.++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~l---v~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERF---VNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHH---HHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 355 788988886444 44433221 122222 34899999999999999999999876 8888888
Q ss_pred --chhhhhhhccchhhHHHHH
Q 003669 485 --SQFVEIYVGVGASRVRSLY 503 (804)
Q Consensus 485 --s~~~~~~~g~~~~~l~~lf 503 (804)
+.+.+..++......+..|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 6666654444444443333
No 208
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.4e-06 Score=102.45 Aligned_cols=60 Identities=28% Similarity=0.474 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 426 ~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
..+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.|...
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3455566666666556788899999888 88999999999999999999877666666543
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.39 E-value=3.3e-06 Score=98.24 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=119.9
Q ss_pred EEEECCCCCChhHHHHHHhhhh----------ccceeeeccchhhhh---hh-------ccchh------hHHHHHHHH-
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI---YV-------GVGAS------RVRSLYQEA- 506 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el----------~~~~~~i~~s~~~~~---~~-------g~~~~------~l~~lf~~a- 506 (804)
+.+.|-||||||.+++.+..++ ...++.|++-.+... |. |.... .+..-|...
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC
Confidence 8899999999999999988755 245677776555443 21 11111 111111100
Q ss_pred HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-cCCCceEEEeecCCCCCCCccccC---CCccc-c
Q 003669 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-EGRGNVITIASTNRPDILDPALVR---PGRFD-R 581 (804)
Q Consensus 507 ~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-~~~~~viVIatTN~~~~LdpaLlr---pgRfd-~ 581 (804)
-...++|++|||+|.|.... ..-|++.+|-. ..+..++||+..|..+. +..++. ..|++ .
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~--------------QdVlYn~fdWpt~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRS--------------QDVLYNIFDWPTLKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCEEEEeccHHHHhccc--------------HHHHHHHhcCCcCCCCceEEEEecccccC-HHHHhccchhhhccce
Confidence 12457899999999998652 33444444421 34567888888888753 333321 12544 3
Q ss_pred cccCCCCCHHHHHHHHHHHHccCCCCChhcHHHHHhhCCCCc--HHHHHHHHHHHHHHHHHcCC-------CCcCHHHHH
Q 003669 582 KIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMV--GAELANIVEVAAINMMRDGR-------TEITTDDLL 652 (804)
Q Consensus 582 ~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~dl~~la~~t~G~s--g~DL~~Lv~~A~~~A~~~~~-------~~It~edi~ 652 (804)
.|.|.+++..+..+|+...+.....-.+--.+-+|......| .+....+|+.|...|..+.. ..++.-|+.
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~ 649 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVM 649 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHH
Confidence 688999999999999999987663222222222333322222 34555788888888876654 568888888
Q ss_pred HHHHHHHcC
Q 003669 653 QAAQIEERG 661 (804)
Q Consensus 653 ~Al~~~~~g 661 (804)
+|+......
T Consensus 650 ~Ai~em~~~ 658 (767)
T KOG1514|consen 650 EAINEMLAS 658 (767)
T ss_pred HHHHHHhhh
Confidence 888766543
No 210
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.39 E-value=1.6e-06 Score=98.78 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=128.2
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 489 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~ 489 (804)
....|+++.|-......+.+.++.+. .-+..|||.|.+||||..+|++|-... +.||+.++|+.+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIA----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhc----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45678888888877777776666543 223458999999999999999997755 67999999997654
Q ss_pred h-----hhccchhhH--------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----
Q 003669 490 I-----YVGVGASRV--------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----- 551 (804)
Q Consensus 490 ~-----~~g~~~~~l--------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~----- 551 (804)
. .+|+..+.+ .-+|+.|. .+-+|+|||..+-.. ....||..+.+-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCCHH--------------HHHHHHHHHhhceEEec
Confidence 3 344433321 22444432 236999999776433 677888777641
Q ss_pred c----CCCceEEEeecCCC-------CCCCccccCCCcccccccCCCCCHHHHHH----HHHHHHcc----CC-----CC
Q 003669 552 E----GRGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KP-----MA 607 (804)
Q Consensus 552 ~----~~~~viVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~----~~-----l~ 607 (804)
- -..+|-||+|||.. ..+-..|.- |++ ++.+..|...+|.+ +...++.+ .+ +.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1 12468899999963 122222222 333 55666677766654 22333322 11 22
Q ss_pred ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 003669 608 DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 608 ~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (804)
++ -+..+.++.-.-+.|+|++++..+...+ .....|+.+|+-
T Consensus 450 ~~-a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 450 PD-ALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HH-HHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 22 2333444443346799999999988633 334447777775
No 211
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.38 E-value=8e-07 Score=97.57 Aligned_cols=77 Identities=29% Similarity=0.341 Sum_probs=45.3
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC------------CCCCCccccCCCc
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~------------~~~LdpaLlrpgR 578 (804)
|+|+||||+|-|.-. .+..|-..++ ..... +||.+||+ |..+|..|+. |
T Consensus 279 pGVLFIDEvHmLDiE--------------cFsfLnralE--s~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE--------------CFSFLNRALE--SELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSBHH--------------HHHHHHHHHT--STT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhccHH--------------HHHHHHHHhc--CCCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 778899998877543 3444444444 22233 56666773 4567777877 5
Q ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCC
Q 003669 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA 607 (804)
Q Consensus 579 fd~~I~~~~Pd~~eR~~Il~~~l~~~~l~ 607 (804)
+= +|...+++.++..+|++.++....+.
T Consensus 340 ll-II~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 LL-IIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EE-EEEE----HHHHHHHHHHHHHHCT--
T ss_pred cE-EEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 53 77888999999999999999876654
No 212
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.7e-07 Score=100.74 Aligned_cols=224 Identities=15% Similarity=0.115 Sum_probs=129.0
Q ss_pred cceeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhcCchHHHHhhhhhHHHHH
Q 003669 318 IVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARV 397 (804)
Q Consensus 318 ~~~~l~~Ykgny~~y~~~~e~~e~~~~~~k~~~~~~~~ik~lekel~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~v 397 (804)
...++..|+|||+.|.+.+. ++..+++++++.+......++.++..++=.++ ++ ....+.. +.+
T Consensus 269 ~~~kL~~YkGN~~~Fvk~k~--E~~~n~qrefe~q~~~R~h~q~fid~FrYna~-----ra------~svqSRI---k~L 332 (582)
T KOG0062|consen 269 ENLKLDYYKGNYSQFVKTKP--EAKKNQQREFEVQMKYRAHLQVFIDKFRYNAA-----RA------SSVQSRI---KML 332 (582)
T ss_pred hhhhhhhhcCcHHHHHHhhH--HhhhhhhhhcchHHHHHHHHHHHHHHhccCcc-----cc------hhHHHHH---HHh
Confidence 44578899999999999998 44466677777777777788888877652111 10 0111111 111
Q ss_pred HHHhcCCCC--cccccCccccccC-ccCchhHHHHHHHHHHhccc--cccccccCcccCC--cEEEECCCCCChhHHHHH
Q 003669 398 RRAYGKGLP--QYLERGVDVKFSD-VAGLGKIRLELEEIVKFFTH--GEMYRRRGVRIPG--GILLCGPPGVGKTLLAKA 470 (804)
Q Consensus 398 s~~tgipv~--k~~~~~~~~~f~~-~~gl~~~~~~l~~lv~~l~~--~~~~~~~gl~i~~--gvLL~Gp~GtGKTtLaka 470 (804)
. ..|.. ...+....+.|+. ..-+.....++.++...+.- ...+.++|..... .+..+|++|.||||+.|.
T Consensus 333 ~---kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi 409 (582)
T KOG0062|consen 333 G---KLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKI 409 (582)
T ss_pred c---cCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHH
Confidence 1 11111 1122223344444 12233333444444433322 1355666665543 399999999999999999
Q ss_pred Hhhhhccceeeeccchhhhh-hhcc-ch---hhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCC---------CCCcch
Q 003669 471 VAGEAGVNFFSISASQFVEI-YVGV-GA---SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK---------GSGGQE 536 (804)
Q Consensus 471 LA~el~~~~~~i~~s~~~~~-~~g~-~~---~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~---------~sgge~ 536 (804)
+.+++.+.-+.+....-... |+.+ .. ...-..++......|+. .=.|+..-++..+..+ -|||++
T Consensus 410 ~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQK 488 (582)
T KOG0062|consen 410 LKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQK 488 (582)
T ss_pred HhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcch
Confidence 99988755444433322211 1111 11 11123444455555653 4566776655544332 389999
Q ss_pred hHHHHHHHHHhhhcccCCCceEEE-eecCCCC
Q 003669 537 RDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (804)
Q Consensus 537 ~~~~l~~LL~~ld~~~~~~~viVI-atTN~~~ 567 (804)
.+.+++.+. ..+++++|+ .+||+.|
T Consensus 489 srvafA~~~------~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 489 SRVAFAACT------WNNPHLLVLDEPTNHLD 514 (582)
T ss_pred hHHHHHHHh------cCCCcEEEecCCCcccc
Confidence 999999887 778888888 8999875
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.37 E-value=6.9e-07 Score=88.85 Aligned_cols=117 Identities=28% Similarity=0.359 Sum_probs=75.1
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc-----------------------eeeeccchhhhhhhccchhhHHHHHHH
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----------------------FFSISASQFVEIYVGVGASRVRSLYQE 505 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~-----------------------~~~i~~s~~~~~~~g~~~~~l~~lf~~ 505 (804)
++|..++|+||+|+||+++++.+|..+-.. +..++..... -.-....++.+.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~---~~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK---KSIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS---SSBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc---chhhHHHHHHHHHH
Confidence 567779999999999999999999865211 1111111000 00122344555555
Q ss_pred HHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccc
Q 003669 506 AKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 581 (804)
Q Consensus 506 a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~ 581 (804)
+... ..-|++||++|.+... ..+.||..|+ ....++.+|.+|+.++.|.|.+++++ -
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~~--------------a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~SRc--~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTEE--------------AQNALLKTLE--EPPENTYFILITNNPSKILPTIRSRC--Q- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-HH--------------HHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHTTS--E-
T ss_pred HHHHHhcCCceEEEeehHhhhhHH--------------HHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHhhc--e-
Confidence 4332 3459999999998665 8899999999 55678999999999999999999944 2
Q ss_pred cccCCC
Q 003669 582 KIFIPK 587 (804)
Q Consensus 582 ~I~~~~ 587 (804)
.+.|++
T Consensus 155 ~i~~~~ 160 (162)
T PF13177_consen 155 VIRFRP 160 (162)
T ss_dssp EEEE--
T ss_pred EEecCC
Confidence 455543
No 214
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.6e-07 Score=98.72 Aligned_cols=131 Identities=22% Similarity=0.326 Sum_probs=89.5
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhc-------------------------cceeeeccchhhhhhhc-----cchhh
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG-------------------------VNFFSISASQFVEIYVG-----VGASR 498 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~-------------------------~~~~~i~~s~~~~~~~g-----~~~~~ 498 (804)
++|.+++|+||+|+|||++++.+|+.+. ++++.++...-. ..-| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 6788899999999999999999998752 122222211000 0000 12344
Q ss_pred HHHHHHHHHhc----CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCcccc
Q 003669 499 VRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV 574 (804)
Q Consensus 499 l~~lf~~a~~~----~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLl 574 (804)
++.+.+.+... ...|+++|+++.+... ..+.++..++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 56666666532 2358888999888654 6778888888653 45677778888899999998
Q ss_pred CCCcccccccCCCCCHHHHHHHHHH
Q 003669 575 RPGRFDRKIFIPKPGLIGRMEILKV 599 (804)
Q Consensus 575 rpgRfd~~I~~~~Pd~~eR~~Il~~ 599 (804)
+++ ..+.|++|+.++..+.+..
T Consensus 162 SRc---~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 SRC---RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHh---hhhcCCCCCHHHHHHHHHh
Confidence 844 3888999999887777754
No 215
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.37 E-value=2.8e-06 Score=93.87 Aligned_cols=191 Identities=20% Similarity=0.199 Sum_probs=109.4
Q ss_pred ccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh---
Q 003669 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 490 (804)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~--- 490 (804)
+++..|.......+.+.+..+. ..+..|+|+|++||||+++|++|-... +.+|+.++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 3445566666655555555432 112348999999999999999997644 468999999976422
Q ss_pred --hhccchhh-------HHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--C------
Q 003669 491 --YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G------ 553 (804)
Q Consensus 491 --~~g~~~~~-------l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--~------ 553 (804)
.+|...+. ....++. ...+.+|||||+.+... ....|+..++... .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCce
Confidence 22221110 0112322 23458999999998654 5666666665311 1
Q ss_pred -CCceEEEeecCCC-------CCCCccccCCCcccccccCCCCCHHHHHH----HHHHHHcc----CCCC--Chhc---H
Q 003669 554 -RGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KPMA--DDVD---Y 612 (804)
Q Consensus 554 -~~~viVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~----~~l~--~~~d---l 612 (804)
..++-||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++.. .... ..++ +
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1257788887653 244455555 553 34455555655543 44444322 1111 1222 3
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHH
Q 003669 613 LAVASMTDGMVGAELANIVEVAAIN 637 (804)
Q Consensus 613 ~~la~~t~G~sg~DL~~Lv~~A~~~ 637 (804)
..+..+.=.-+.++|.++++.|+..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 4444444445668888888887653
No 216
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=4.2e-07 Score=97.72 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=75.0
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhc----cchhhHHHHHHHHHhcCCceeehhHHHHhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG----VGASRVRSLYQEAKDNAPSVVFIDELDAVGR 524 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g----~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~ 524 (804)
.|++|+|++|+|||+|+.++++++ +.+++.++..++...+.. ........+++... ..++|+|||+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 469999999999999999999976 678888888877654321 11111223443332 34599999984321
Q ss_pred hcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC-CC----CCccccCCCcc---cccccCCCCCHHHHHHH
Q 003669 525 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DI----LDPALVRPGRF---DRKIFIPKPGLIGRMEI 596 (804)
Q Consensus 525 ~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~-~~----LdpaLlrpgRf---d~~I~~~~Pd~~eR~~I 596 (804)
..+ .....|+..++...... ..+|.|||.+ +. ++..+.+ |+ ...|.+..+|. |.++
T Consensus 192 --------~t~---~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 192 --------DTE---WAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred --------CCH---HHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 111 24455666666544333 3466666654 22 4555555 53 22355555553 4444
Q ss_pred HH
Q 003669 597 LK 598 (804)
Q Consensus 597 l~ 598 (804)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.37 E-value=3.3e-06 Score=98.91 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=112.9
Q ss_pred ccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh---
Q 003669 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 490 (804)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~--- 490 (804)
+..+.|.......+.+.+..+.. .+..|+|+|++||||+++|++|.... +.+|+.++|+.+-+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 34455666666566555554321 12348999999999999999998754 578999999876432
Q ss_pred --hhccchhhH-------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------
Q 003669 491 --YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------- 552 (804)
Q Consensus 491 --~~g~~~~~l-------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--------- 552 (804)
.+|...+.+ ...|+. ...+.+|||||+.+... ....|+..++...
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 233211100 112333 23458999999998655 5666776665321
Q ss_pred CCCceEEEeecCCCC-------CCCccccCCCcccccccCCCCCHHHHHH----HHHHHHccC----CC-CChhc---HH
Q 003669 553 GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----PM-ADDVD---YL 613 (804)
Q Consensus 553 ~~~~viVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~l-~~~~d---l~ 613 (804)
...++-||++||..- .+.+.|.. |+. .+.+..|...+|.+ +++.++... .. ...++ +.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 113578888887531 23333333 333 34556666666643 333333221 11 11222 44
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003669 614 AVASMTDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 614 ~la~~t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
.|..+.=.-+.++|+++++.|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 45555545577999999999887654
No 218
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.35 E-value=2e-06 Score=88.32 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=112.6
Q ss_pred ccCccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh-cc----ceeeecc
Q 003669 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GV----NFFSISA 484 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el-~~----~~~~i~~ 484 (804)
++.....+.++.|.++.+..+.-+...=. -++++|.||||+||||-+.+||+++ |. .+.+++.
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gn------------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGN------------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCC------------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 44566778899999988877765544211 1348999999999999999999876 32 2344444
Q ss_pred chhhhhhhccchhhHHHHHHHHH-hcCCc---eeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEE
Q 003669 485 SQFVEIYVGVGASRVRSLYQEAK-DNAPS---VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (804)
Q Consensus 485 s~~~~~~~g~~~~~l~~lf~~a~-~~~p~---Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI 560 (804)
++-.. +..-...+. .|.+-+ ..+|+ |+++||.|++... ....|-..|+-..+ ..-|.
T Consensus 87 SdeRG--IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRtMEiyS~--ttRFa 147 (333)
T KOG0991|consen 87 SDERG--IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRTMEIYSN--TTRFA 147 (333)
T ss_pred ccccc--cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHHHHHHcc--cchhh
Confidence 43111 111112222 333322 23343 8999999988543 34444444542222 33455
Q ss_pred eecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCC-ChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003669 561 ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMM 639 (804)
Q Consensus 561 atTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~-~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~ 639 (804)
.++|..+.+=..+.+ |.- .+.+...+..+...-+....+...+. .+.-++.+.-...| |+++.+|.-. +.
T Consensus 148 laCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ--st 218 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ--ST 218 (333)
T ss_pred hhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHH--HH
Confidence 677777777777776 332 44455555554433333332222222 22224444444444 5666665433 44
Q ss_pred HcCCCCcCHHHHHHH
Q 003669 640 RDGRTEITTDDLLQA 654 (804)
Q Consensus 640 ~~~~~~It~edi~~A 654 (804)
-.+-..|+.+.+...
T Consensus 219 ~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 219 VNGFGLVNQENVFKV 233 (333)
T ss_pred hccccccchhhhhhc
Confidence 455566777766443
No 219
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.34 E-value=5.1e-07 Score=95.62 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+...|.....+++++++++.| +.|+||||||||||+|+|++-+.+..+.|
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V 59 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 334566778889999999998 88999999999999999999887655444
No 220
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.32 E-value=3.6e-06 Score=101.25 Aligned_cols=208 Identities=21% Similarity=0.235 Sum_probs=120.5
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhh--
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE-- 489 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~-- 489 (804)
..|++..|.......+.+.+..+.. -...|+|+|++||||+++|++|.... +.+|+.++|+.+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4577777776666655555444321 12348999999999999999998754 46999999987642
Q ss_pred ---hhhccch----hhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc----C-----
Q 003669 490 ---IYVGVGA----SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G----- 553 (804)
Q Consensus 490 ---~~~g~~~----~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~----~----- 553 (804)
..+|... ......|+. ...+.||||||+.+... ....|+..++.-. +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 2333210 000112322 23568999999998655 5667776665321 1
Q ss_pred CCceEEEeecCCCC-------CCCccccCCCcccccccCCCCCHHHHHH----HHHHHHccC----C--C-CChhcHHHH
Q 003669 554 RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----P--M-ADDVDYLAV 615 (804)
Q Consensus 554 ~~~viVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~--l-~~~~dl~~l 615 (804)
..++-||+|||..- .+.+.|.. |+. .+.+..|...+|.+ +++.++... . . ..+..+..|
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 12567888887531 22222222 222 34556666666643 344444321 1 1 122224445
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 003669 616 ASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (804)
Q Consensus 616 a~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (804)
..+.=.-+.++|.++++.|...+ ....|+.+|+-..+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 55554457789999998877542 34468888875443
No 221
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.32 E-value=2.7e-06 Score=96.86 Aligned_cols=204 Identities=24% Similarity=0.293 Sum_probs=125.3
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh--
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-- 490 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-- 490 (804)
.+....|-......+.+.+..+... ...|+|+|.+||||-.+|++|-... +.||+.++|+.+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 3455677777888887777765422 2248999999999999999998755 569999999976544
Q ss_pred ---hhccchhhH-------HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----C--
Q 003669 491 ---YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G-- 553 (804)
Q Consensus 491 ---~~g~~~~~l-------~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----~-- 553 (804)
.+|...+.+ .-.|+.| ..+.+|||||..+... ++..||..+..-. +
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCCCc
Confidence 344333211 1133333 3458999999887544 6777887776411 1
Q ss_pred --CCceEEEeecCCC-------CCCCccccCCCcccccccCCCCCHHHHHH----HHHHHHcc----CCC-CChhcHHHH
Q 003669 554 --RGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KPM-ADDVDYLAV 615 (804)
Q Consensus 554 --~~~viVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~----~~l-~~~~dl~~l 615 (804)
.-+|-||++||.. ..+-+.|.. |+. ++.+..|...+|.+ +++++++. .+. ...++...+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 2357899999863 122223333 443 66777888877765 33444332 222 233444444
Q ss_pred HhhCCC---CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 003669 616 ASMTDG---MVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 616 a~~t~G---~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (804)
...... -+.++|.|++..++. ......|+.+++-
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~i---l~~~~~i~~~~l~ 385 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVI---LSEGPEIEVEDLP 385 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHh---cCCccccchhhcc
Confidence 444332 245777777776654 3345567766664
No 222
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.31 E-value=4.8e-06 Score=97.68 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=116.5
Q ss_pred ccccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhh
Q 003669 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 489 (804)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~ 489 (804)
....|++..|.......+.+.+..+.. ....|+|+|++||||+++|+++-... ..+|+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 345677777776665555444443321 12348999999999999999986543 46899999987643
Q ss_pred h-----hhccchhh-------HHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc--c---
Q 003669 490 I-----YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E--- 552 (804)
Q Consensus 490 ~-----~~g~~~~~-------l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~--~--- 552 (804)
. .+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++.. .
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCC
Confidence 2 23322110 11234432 3457999999998654 556666666431 1
Q ss_pred ----CCCceEEEeecCCC-------CCCCccccCCCcccccccCCCCCHHHHHH----HHHHHHc----cCCCC-Chhc-
Q 003669 553 ----GRGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHAR----KKPMA-DDVD- 611 (804)
Q Consensus 553 ----~~~~viVIatTN~~-------~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~----~~~l~-~~~d- 611 (804)
...++-||++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++. ..+.. ..+.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 12356788877653 123344444 443 35555666666553 3333332 22211 1233
Q ss_pred --HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 003669 612 --YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 612 --l~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi 651 (804)
+..|..+.-.-+.++|.+++..|+..+ ....|+.+|+
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 333434433346688888888776432 3446777775
No 223
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=2.7e-07 Score=97.30 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=42.2
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+++...|.+...+.++++.++.| +.|+||||+|||||+|++.|-+.+..+++.
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 34444565435888999999988 889999999999999999998776666555
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.4e-05 Score=89.53 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=114.0
Q ss_pred CcccCCcEEEECCCCCChhHHHHHHhhhh-----ccceeeeccchhhhh----------h----hccchh-hHHHHHHHH
Q 003669 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------Y----VGVGAS-RVRSLYQEA 506 (804)
Q Consensus 447 gl~i~~gvLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~s~~~~~----------~----~g~~~~-~l~~lf~~a 506 (804)
...-++++.+.|.||+|||.++.-+.... .+..++++|..+... + .+.+.+ .....|+.-
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44556679999999999999998665433 234477777754332 1 111111 112233332
Q ss_pred -Hhc-CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccC----CCccc
Q 003669 507 -KDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR----PGRFD 580 (804)
Q Consensus 507 -~~~-~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlr----pgRfd 580 (804)
... .+-++++||+|.++.... .++..+. ++.. ..+.++++|+..|..|.-|..|.+ .+.-+
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lF-ewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLF-EWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred HhcccceEEEEechhhHHhhccc-----------ceeeeeh-hccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 222 255889999999985421 1333322 2332 235678889999988755543331 23345
Q ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCChhc--HHHHHhhCCCCcH--HHHHHHHHHHHHHHHHcC
Q 003669 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVD--YLAVASMTDGMVG--AELANIVEVAAINMMRDG 642 (804)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~d--l~~la~~t~G~sg--~DL~~Lv~~A~~~A~~~~ 642 (804)
..+.|++|+.++..+||...+.........+ +...|+...|.|| |.+-.+|+.|..++....
T Consensus 318 ~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 318 KLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred ceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998776554333 5667777888777 445566776766665543
No 225
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=7e-07 Score=91.18 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=43.9
Q ss_pred HHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 430 l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
++++.+.|++...+++.++.+.+| +.++||+|+|||||+|+|.+--.+..+.|
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I 59 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE
Confidence 356677788888999999999998 88999999999999999988554444444
No 226
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.22 E-value=1.5e-05 Score=96.68 Aligned_cols=193 Identities=22% Similarity=0.247 Sum_probs=112.8
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~- 490 (804)
..|.+..|.......+.+.+..+.. -...|+|+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 4566777777777666655554421 12348999999999999999997744 569999999875432
Q ss_pred ----hhccchh-------hHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-------
Q 003669 491 ----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------- 552 (804)
Q Consensus 491 ----~~g~~~~-------~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~------- 552 (804)
.+|...+ .....++. ...+++|||||+.+... ....|+..++...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC
Confidence 2222110 00112332 23468999999998654 5666666665321
Q ss_pred --CCCceEEEeecCCCC-------CCCccccCCCcccccccCCCCCHHHHHH----HHHHHHccC----CCC----Chhc
Q 003669 553 --GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----PMA----DDVD 611 (804)
Q Consensus 553 --~~~~viVIatTN~~~-------~LdpaLlrpgRfd~~I~~~~Pd~~eR~~----Il~~~l~~~----~l~----~~~d 611 (804)
...++-+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++.+. +.. ...-
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 124577888887531 11222222 222 34566677777654 344443221 111 1222
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003669 612 YLAVASMTDGMVGAELANIVEVAAIN 637 (804)
Q Consensus 612 l~~la~~t~G~sg~DL~~Lv~~A~~~ 637 (804)
+..|..+.-.-+.++|+++++.|+..
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 44455555455778999999888754
No 227
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.19 E-value=3.8e-06 Score=84.14 Aligned_cols=97 Identities=28% Similarity=0.417 Sum_probs=64.9
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchh-------hHHHHHHHHHhcCCceeeh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~-------~l~~lf~~a~~~~p~Il~I 516 (804)
..|+|+|++||||+.+|++|-... +.||+.++|+.+... .+|...+ .-..+++.|. .+.+||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEee
Confidence 458999999999999999998755 568999999876533 3443221 0123555543 358999
Q ss_pred hHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----C----CCceEEEeecCC
Q 003669 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNR 565 (804)
Q Consensus 517 DEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----~----~~~viVIatTN~ 565 (804)
|||+.+... +...|+..|+.-. . ..++-||++|+.
T Consensus 100 d~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999998765 6777777776311 1 236889999885
No 228
>PRK08181 transposase; Validated
Probab=98.19 E-value=4e-06 Score=90.10 Aligned_cols=99 Identities=22% Similarity=0.336 Sum_probs=61.5
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc-chhhHHHHHHHHHhcCCceeehhHHHHhhhhcC
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~ 527 (804)
.+++|+||+|||||+|+.+++.++ |..++.++..+++..+... ........+.... .+++|+|||+......
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC--
Confidence 459999999999999999999755 6677788888777654221 1122233444433 4569999999765322
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 528 ~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
+. ....|+..++..... . -+|.|||.+
T Consensus 183 -------~~---~~~~Lf~lin~R~~~-~-s~IiTSN~~ 209 (269)
T PRK08181 183 -------QA---ETSVLFELISARYER-R-SILITANQP 209 (269)
T ss_pred -------HH---HHHHHHHHHHHHHhC-C-CEEEEcCCC
Confidence 11 234444455543333 2 456677754
No 229
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.2e-06 Score=95.33 Aligned_cols=209 Identities=25% Similarity=0.290 Sum_probs=118.7
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccc----eeeeccchhhhh
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----FFSISASQFVEI 490 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~----~~~i~~s~~~~~ 490 (804)
..|.|+.|....+..+.-+... ..+++++||||||||.|++-+.+-+.+- .++++. +..
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~---I~s 238 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSA---IHS 238 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHH---Hhh
Confidence 4688888988887666544332 1348999999999999999998865321 111110 000
Q ss_pred hhccchh-----------------hHHHHHH--------HHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHH
Q 003669 491 YVGVGAS-----------------RVRSLYQ--------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 545 (804)
Q Consensus 491 ~~g~~~~-----------------~l~~lf~--------~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL 545 (804)
+.|.... ....+.- .+.....+|+||||+-.+- +.+++.|.
T Consensus 239 ~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~--------------~~iLe~LR 304 (490)
T COG0606 239 LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFK--------------RSILEALR 304 (490)
T ss_pred hcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhh--------------HHHHHHHh
Confidence 1110000 0000000 0001112499999985553 34888888
Q ss_pred Hhhhccc-----------CCCceEEEeecCCC-----------------------CCCCccccCCCcccccccCCCCCHH
Q 003669 546 VCLDGFE-----------GRGNVITIASTNRP-----------------------DILDPALVRPGRFDRKIFIPKPGLI 591 (804)
Q Consensus 546 ~~ld~~~-----------~~~~viVIatTN~~-----------------------~~LdpaLlrpgRfd~~I~~~~Pd~~ 591 (804)
+=|+.-. -..++.+|+++|.- ..|.-.|++ |||..+.++.++..
T Consensus 305 ~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~ 382 (490)
T COG0606 305 EPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAG 382 (490)
T ss_pred CccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHH
Confidence 7776411 12457788888853 134456667 99999988876633
Q ss_pred HH--------------HHHHHHH----HccCCC--C----------------ChhcHHHHHhhCCCCcHHHHHHHHHHHH
Q 003669 592 GR--------------MEILKVH----ARKKPM--A----------------DDVDYLAVASMTDGMVGAELANIVEVAA 635 (804)
Q Consensus 592 eR--------------~~Il~~~----l~~~~l--~----------------~~~dl~~la~~t~G~sg~DL~~Lv~~A~ 635 (804)
++ ..+.+.+ .+...+ . .+.++...+-..-++|.+....+++-|.
T Consensus 383 e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvar 462 (490)
T COG0606 383 ELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVAR 462 (490)
T ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 32 1222211 011111 1 1223334444556677777778888887
Q ss_pred HHHHHcCCCCcCHHHHHHHHH
Q 003669 636 INMMRDGRTEITTDDLLQAAQ 656 (804)
Q Consensus 636 ~~A~~~~~~~It~edi~~Al~ 656 (804)
.+|-..+...|...++.+|+.
T Consensus 463 TiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 463 TIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhcccCcchhhHHHHHHHHh
Confidence 777777777788888877765
No 230
>PRK06526 transposase; Provisional
Probab=98.18 E-value=1.8e-06 Score=92.12 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=46.5
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc-chhhHHHHHHHHHhcCCceeehhHHHHhh
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVG 523 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~IDEId~l~ 523 (804)
+.+++|+||+|||||+|+.+|+.++ |..+..+++.+++...... ..+.+...+... ..+++++|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 3469999999999999999998865 5566666666665543211 111222233322 346799999997653
No 231
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.17 E-value=5.1e-06 Score=98.41 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=46.6
Q ss_pred HHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 427 ~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 383 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 345556655566666888999999988 8899999999999999999988776666654
No 232
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.17 E-value=9e-07 Score=97.74 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=44.1
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+++.+.|.+.....++++.+..| +.|.||+||||||++|+|||...+..++|.
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~ 63 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 44566677777888999999998 779999999999999999998776666553
No 233
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=2.6e-06 Score=88.70 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=40.1
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccch
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~ 486 (804)
...+++.++.+..| +.|+|+||+|||||+|.||+...+..+.+.+..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 34678889999888 999999999999999999999988877765543
No 234
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.15 E-value=1.1e-06 Score=88.75 Aligned_cols=74 Identities=24% Similarity=0.185 Sum_probs=48.1
Q ss_pred cccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccc---h--hhHHHHHHHHHhcCCceeehhHHH
Q 003669 448 VRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG---A--SRVRSLYQEAKDNAPSVVFIDELD 520 (804)
Q Consensus 448 l~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~---~--~~l~~lf~~a~~~~p~Il~IDEId 520 (804)
+.++.| +.|+||||+|||||++.|++...+..+++......-.|..+. . ..-+-.+..+....|.++++||.-
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 466655 889999999999999999998877666665433110111111 0 111224455556778999999974
Q ss_pred H
Q 003669 521 A 521 (804)
Q Consensus 521 ~ 521 (804)
.
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 4
No 235
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.15 E-value=1.1e-06 Score=97.23 Aligned_cols=190 Identities=22% Similarity=0.235 Sum_probs=104.8
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh----hhccchhhHHHHHH--HHHhcCCceeehhHHHHhhhhc
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----YVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVGRER 526 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~----~~g~~~~~l~~lf~--~a~~~~p~Il~IDEId~l~~~r 526 (804)
++||+|.||+|||.|++.++.-.. ..+++++...... .+......-...++ .+-....+|++|||+|++...
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~p-r~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~- 136 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAP-RSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED- 136 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-S-SEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-
T ss_pred ceeeccchhhhHHHHHHHHHhhCC-ceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch-
Confidence 399999999999999998876543 3333333221110 00000000000000 011223469999999998553
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhccc-----------CCCceEEEeecCCCC-------------CCCccccCCCccccc
Q 003669 527 GLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDRK 582 (804)
Q Consensus 527 ~~~~~sgge~~~~~l~~LL~~ld~~~-----------~~~~viVIatTN~~~-------------~LdpaLlrpgRfd~~ 582 (804)
....|+..|+... -+.+.-|++++|+.. .+++.|++ |||.+
T Consensus 137 -------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLi 201 (331)
T PF00493_consen 137 -------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLI 201 (331)
T ss_dssp -------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEE
T ss_pred -------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEE
Confidence 4566666666411 124567889998765 57889999 99988
Q ss_pred ccC-CCCCHHHHHHHHHHHHccCCCC----------------Chh--cHHHHHh--------------------------
Q 003669 583 IFI-PKPGLIGRMEILKVHARKKPMA----------------DDV--DYLAVAS-------------------------- 617 (804)
Q Consensus 583 I~~-~~Pd~~eR~~Il~~~l~~~~l~----------------~~~--dl~~la~-------------------------- 617 (804)
+.+ +.|+.+.-..+.+..+...... .+. .+-.+++
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 765 6777665555555444322110 000 0111111
Q ss_pred ----hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 003669 618 ----MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (804)
Q Consensus 618 ----~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (804)
.....+.|.|+.+++-|...|..+-+..|+.+|+..|+....
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 012356788899999999999999999999999999987654
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.14 E-value=4.2e-05 Score=80.67 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=99.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh-c--cceeeeccchhhhh-------------h--------hccch-hhHHHHHHHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA-G--VNFFSISASQFVEI-------------Y--------VGVGA-SRVRSLYQEA 506 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el-~--~~~~~i~~s~~~~~-------------~--------~g~~~-~~l~~lf~~a 506 (804)
+.++++||+|+||-|.+.+|.+++ | ..-..+....|... | +|... --+..+...+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 348999999999999999998876 2 22112221111110 1 11111 1123344333
Q ss_pred Hhc---------CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCC
Q 003669 507 KDN---------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPG 577 (804)
Q Consensus 507 ~~~---------~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpg 577 (804)
.+. ...+++|.|.|.+..+ ....|-..|+...+ ++-+|..+|....+-+++.+++
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHhc--CceEEEEecCcccchhHHhhhe
Confidence 322 2357899999988655 67778888885544 5566777788888999998844
Q ss_pred cccccccCCCCCHHHHHHHHHHHHccCCCCC-hhcHHHHHhhCCCC
Q 003669 578 RFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGM 622 (804)
Q Consensus 578 Rfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~-~~dl~~la~~t~G~ 622 (804)
..|.+|.|+.++...++...+.+.++.- ..-+..++..+.|-
T Consensus 179 ---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 179 ---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred ---eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 2688999999999999999988776653 33356667666553
No 237
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.13 E-value=4.5e-06 Score=98.78 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 427 ~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 345566655566566888999999988 8899999999999999999988766666654
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.12 E-value=3.6e-06 Score=90.08 Aligned_cols=70 Identities=33% Similarity=0.442 Sum_probs=46.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhc-cchhhHHHHHHHHHhcCCceeehhHHHHh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG-VGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g-~~~~~l~~lf~~a~~~~p~Il~IDEId~l 522 (804)
.+++|+||||||||+|+.+|+..+ |..+..+++.++...+.. .....+...+... ...+++++|||+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 348999999999999999998754 555666676666543321 1112233445443 245679999999654
No 239
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.12 E-value=2.6e-05 Score=82.81 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=67.6
Q ss_pred CCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCChh-cHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 003669 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-DYLAVASMTDGMVGAELANIVEVAAINMMRDGRT 644 (804)
Q Consensus 566 ~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~~-dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~ 644 (804)
|..+|-.|+. |+- +|...+++.++..+||+..+....+.-+- -++.|.......+-+--.+|+..|...+.++...
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4566777776 543 66778899999999999998766543222 2444555555556677778999999999999999
Q ss_pred CcCHHHHHHHHHHHHc
Q 003669 645 EITTDDLLQAAQIEER 660 (804)
Q Consensus 645 ~It~edi~~Al~~~~~ 660 (804)
.+..+|+..+......
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999998776543
No 240
>PF13173 AAA_14: AAA domain
Probab=98.12 E-value=8.7e-06 Score=77.48 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=44.8
Q ss_pred EEEECCCCCChhHHHHHHhhhhc--cceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHh
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~--~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l 522 (804)
++|.||.||||||+++.++..+. ...+++++.+......... . +...+.......+.+++|||++.+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 78999999999999999998876 6778888776544211100 0 112222211124568999999887
No 241
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.1e-05 Score=81.01 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=41.1
Q ss_pred cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 438 ~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
....+|.++++.+..| +.+.||||+|||||+|.|||-+.+..++|.+.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 4556788899998887 88999999999999999999998887777654
No 242
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.08 E-value=1e-05 Score=79.59 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=43.8
Q ss_pred HHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 429 ~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
++.++...-.+..++.+.++.+.+| ++++||+|||||||.|++|.-..+..+.+.
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 4455555556778888999999888 999999999999999999987766655543
No 243
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.07 E-value=4.5e-05 Score=88.02 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=130.5
Q ss_pred cccCccCchhHHHHHHHHHHhccccccccccCcccCC--cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh---
Q 003669 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--- 490 (804)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~--gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--- 490 (804)
.|+.+.|.+.++.++- ...++.......-|.++.+ +|+++|.||+|||-++++.++.+.... ++++..-...
T Consensus 343 l~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~v-YtsGkaSSaAGLT 419 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSV-YTSGKASSAAGLT 419 (764)
T ss_pred hCccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcce-EecCcccccccce
Confidence 5778888888887663 2234433333333333333 399999999999999999998765433 3332211110
Q ss_pred -hhccchhhHHHHHHH-H-HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----------cCCCc
Q 003669 491 -YVGVGASRVRSLYQE-A-KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGN 556 (804)
Q Consensus 491 -~~g~~~~~l~~lf~~-a-~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-----------~~~~~ 556 (804)
-+-..+..-...++. | .-...+|-.|||+|++..+ -...+...|+.. .-+.+
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEeecch
Confidence 000000000001111 0 0122358899999998543 123344444421 11345
Q ss_pred eEEEeecCCCC-------------CCCccccCCCcccccc-cCCCCCHHHHHHHHHHHHccC------------------
Q 003669 557 VITIASTNRPD-------------ILDPALVRPGRFDRKI-FIPKPGLIGRMEILKVHARKK------------------ 604 (804)
Q Consensus 557 viVIatTN~~~-------------~LdpaLlrpgRfd~~I-~~~~Pd~~eR~~Il~~~l~~~------------------ 604 (804)
.-|||++|+.. .+++++++ |||..+ -++.|+...-..|-++.+...
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV 563 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 66788888753 67889999 999655 346777665554444433221
Q ss_pred -----------CCCChhcHHHHH---------------hhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 003669 605 -----------PMADDVDYLAVA---------------SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (804)
Q Consensus 605 -----------~l~~~~dl~~la---------------~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (804)
+.....--..+. .-+.+.|.|+|+.+++-+-..|...-+..+|.+|+.+|++..
T Consensus 564 rkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 564 RKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 110000000111 012367889999999988888888888899999999998876
Q ss_pred HcC
Q 003669 659 ERG 661 (804)
Q Consensus 659 ~~g 661 (804)
...
T Consensus 644 k~S 646 (764)
T KOG0480|consen 644 KKS 646 (764)
T ss_pred Hhh
Confidence 543
No 244
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.07 E-value=4.4e-06 Score=82.99 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=69.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccch--hh--------hhhhcc---chh--hH
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FV--------EIYVGV---GAS--RV 499 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~--~~--------~~~~g~---~~~--~l 499 (804)
|.+...+.++++.++.| +.|.||||+|||||++.|++...+..+.+.... .. ...++. -.. ..
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~q 89 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQ 89 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHH
Confidence 33334678888888887 889999999999999999998766555443221 10 111111 111 12
Q ss_pred HHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC
Q 003669 500 RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 500 ~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
+-.+..+....|.++++||...-.. ...+..+..++..+. .. +..+|.+|+..+
T Consensus 90 rl~laral~~~p~illlDEP~~~LD----------~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 90 MVEIARALARNARLLILDEPTAALT----------PAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 3345556667889999999743322 223334445554442 22 445666666654
No 245
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.06 E-value=1.4e-06 Score=94.99 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=44.6
Q ss_pred HHHHHhcc-ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 431 ~~lv~~l~-~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.++.+.|. ....++++++.++.| +.|.||||+|||||+|+|++...+..+++..
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i 64 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 44555666 577889999999988 8899999999999999999988777666543
No 246
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.04 E-value=5.7e-06 Score=86.17 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 426 ~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
..+.++++...+.+..++.+++.++..| +.|+||||+|||||++.++++.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 3455566666778888999999999887 9999999999999999999865
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=1.1e-05 Score=76.21 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=46.0
Q ss_pred cEEEECCCCCChhHHHHHHhhhh--------ccceeeeccchhhhh---------hhc------cchhhH-HHHHHHHHh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQFVEI---------YVG------VGASRV-RSLYQEAKD 508 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el--------~~~~~~i~~s~~~~~---------~~g------~~~~~l-~~lf~~a~~ 508 (804)
.++++||+|+|||++++.++... ..+++.+++...... .++ .....+ ..+.+.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 38899999999999999999977 567777776654421 011 111222 334444445
Q ss_pred cCCceeehhHHHHhh
Q 003669 509 NAPSVVFIDELDAVG 523 (804)
Q Consensus 509 ~~p~Il~IDEId~l~ 523 (804)
....+++|||+|.+.
T Consensus 86 ~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF 100 (131)
T ss_dssp CTEEEEEEETTHHHH
T ss_pred cCCeEEEEeChHhcC
Confidence 544589999999973
No 248
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=3.1e-06 Score=87.80 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 426 ~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
.+++++++...+.+...+.++++++++| +.+.||+|+|||||+|.|.+.+.+.-+.|
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 3455677788899999999999999999 78999999999999999999886655444
No 249
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.03 E-value=1.3e-06 Score=96.07 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=42.5
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
+++.+.|++...++++++.+..| +.|+||+|||||||+|.|||-..+..++|..+
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~ 63 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 34444555433567788888888 88999999999999999999888777766544
No 250
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.03 E-value=1.4e-05 Score=94.81 Aligned_cols=221 Identities=22% Similarity=0.255 Sum_probs=119.4
Q ss_pred ccCccCchhHHHHHHHHHHhccccccccccCcccCC--cEEEECCCCCChhHHHHHHhhhhccceeee-ccchhhhhhhc
Q 003669 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SASQFVEIYVG 493 (804)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~--gvLL~Gp~GtGKTtLakaLA~el~~~~~~i-~~s~~~~~~~g 493 (804)
.+.+.|.+.++..+- ...++.......-|.++.+ ++||+|.||+|||.|+|.+++.+...++.- .++.- +|
T Consensus 285 aPsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 455677777664442 2223333322222333332 399999999999999999998764433221 11111 11
Q ss_pred cchhhHHHHH--HHH------HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----------cCC
Q 003669 494 VGASRVRSLY--QEA------KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGR 554 (804)
Q Consensus 494 ~~~~~l~~lf--~~a------~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-----------~~~ 554 (804)
-+....++-. ++. .-..++|.+|||+|++... ..+.+...|+.. .-+
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHHhcEeeecccceeeecc
Confidence 1111111100 100 1123579999999987433 233444444421 112
Q ss_pred CceEEEeecCCCC-------------CCCccccCCCcccccccC-CCCCHHHHHH----HHHHHHccC------------
Q 003669 555 GNVITIASTNRPD-------------ILDPALVRPGRFDRKIFI-PKPGLIGRME----ILKVHARKK------------ 604 (804)
Q Consensus 555 ~~viVIatTN~~~-------------~LdpaLlrpgRfd~~I~~-~~Pd~~eR~~----Il~~~l~~~------------ 604 (804)
...-|+|++|+.. .|+++|++ |||.++.+ +.|+.+.-.. |+..|....
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 3456778888764 67889999 99976654 4566543333 333332110
Q ss_pred ---------------------CCCChhcHHHHH-----h----------hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 003669 605 ---------------------PMADDVDYLAVA-----S----------MTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (804)
Q Consensus 605 ---------------------~l~~~~dl~~la-----~----------~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~ 648 (804)
+...+.....+. . .+-..|.|+|+.+++-|-..|..+-...++.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 011110011110 0 1123677888888888877777777778888
Q ss_pred HHHHHHHHHHH
Q 003669 649 DDLLQAAQIEE 659 (804)
Q Consensus 649 edi~~Al~~~~ 659 (804)
+|+..|+..+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 251
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.02 E-value=3.3e-05 Score=87.30 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=117.5
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~- 490 (804)
..+..++|.......+.+.++.+... ...|||.|.+||||..+||+|-... ..||+.++|+.+-+.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 34556777777777777766655322 1238999999999999999997654 679999999987654
Q ss_pred ----hhccchhhHHH-------HHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----cC-
Q 003669 491 ----YVGVGASRVRS-------LYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----EG- 553 (804)
Q Consensus 491 ----~~g~~~~~l~~-------lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-----~~- 553 (804)
.+|...+.+.. -|+. ...+-+|+|||..+-.. ....||..+.+. .+
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFEl---AdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFEL---ADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHhcccccccccchhccCcceee---cCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecCCC
Confidence 34443332211 1222 12457999999776443 667777766541 11
Q ss_pred ---CCceEEEeecCCCCCCCccccCCCcccc-------cccCCCCCHHHHHH----HHHHHHc----cCCC-CChh---c
Q 003669 554 ---RGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHAR----KKPM-ADDV---D 611 (804)
Q Consensus 554 ---~~~viVIatTN~~~~LdpaLlrpgRfd~-------~I~~~~Pd~~eR~~----Il~~~l~----~~~l-~~~~---d 611 (804)
.-+|-||++||+ +|-.+. +.|+|-. ++.+..|...+|.+ +...++. ..+. ...+ -
T Consensus 353 r~ikVDVRiIAATNR--DL~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNR--DLEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccch--hHHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 124889999997 333322 2233321 44555666666543 2222222 2222 1111 2
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 612 YLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 612 l~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
++.+..+.-.-+.++|+++++.|+..|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 444445544457799999999999877
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.00 E-value=2.3e-06 Score=86.26 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=35.5
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
....+.++++.+..| ++|.||||+|||||++.|++...+.-+.+
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 334677888888877 88999999999999999999875554443
No 253
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.00 E-value=2.6e-05 Score=89.61 Aligned_cols=176 Identities=23% Similarity=0.232 Sum_probs=103.5
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchhhH-------HHHHHHHHhcCCceeehh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~ID 517 (804)
.++|+|++||||+++++++.... +.+|+.++|+.+... .+|...+.+ ...++ ....+.+|||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 240 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLD 240 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEe
Confidence 48999999999999999997654 468999999876432 122111100 00111 2335689999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCC-------CCCCccccCCCcccc
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~-------~~LdpaLlrpgRfd~ 581 (804)
||+.+... ....|+..++... ...++-+|++|+.. ..+.+.|.. |+.
T Consensus 241 ~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 303 (445)
T TIGR02915 241 EIGDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA- 303 (445)
T ss_pred chhhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-
Confidence 99998655 5666666665321 01257788888654 233333333 433
Q ss_pred cccCCCCCHHHHHH----HHHHHHccC----CC----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 582 KIFIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~l----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
.+.+..|...+|.+ +++.++... .. ....-+..|..+.-.-+.++|+++++.|+..+ ....|+.+
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~ 380 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAE 380 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHH
Confidence 34556666666654 334343221 11 12222445555554557789999999887543 33467777
Q ss_pred HH
Q 003669 650 DL 651 (804)
Q Consensus 650 di 651 (804)
++
T Consensus 381 ~l 382 (445)
T TIGR02915 381 DL 382 (445)
T ss_pred Hc
Confidence 65
No 254
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.00 E-value=7.1e-06 Score=79.90 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=53.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh-hhcc-chh-hHHHHHHHHHhcCCceee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGV-GAS-RVRSLYQEAKDNAPSVVF 515 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~-~~g~-~~~-~l~~lf~~a~~~~p~Il~ 515 (804)
..+.++++.+..| ++|.||||+|||||+++|++...+..+.+........ |+.+ ..+ .-+-.+..+....|.+++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4567778888877 8899999999999999999988776666544321111 1111 111 112234555567788999
Q ss_pred hhHHHH
Q 003669 516 IDELDA 521 (804)
Q Consensus 516 IDEId~ 521 (804)
+||...
T Consensus 94 lDEP~~ 99 (144)
T cd03221 94 LDEPTN 99 (144)
T ss_pred EeCCcc
Confidence 999744
No 255
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=5.6e-06 Score=81.43 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=67.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchh--hh-------hhhcc----chh-hHHHHHH
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE-------IYVGV----GAS-RVRSLYQ 504 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~--~~-------~~~g~----~~~-~l~~lf~ 504 (804)
..+...++.++.| ++|+||||+|||||+++|++.+.+..+++..... .. ..++. ..+ ..+-.+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~ 92 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALA 92 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHH
Confidence 4567778888876 8899999999999999999988766555543321 10 11111 111 1122344
Q ss_pred HHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCC
Q 003669 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 505 ~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
.+....|.++++||...-.. ...+..+..++..+. .. +..+|.+|+..+.+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD----------~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLD----------PASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 44556688999999754322 122334444444432 22 34567777765543
No 256
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.99 E-value=6.3e-06 Score=96.22 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccch
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~ 486 (804)
.++...|.+..++.+.++.+..| +.|+|+||+|||||+|+|+|...+..+.|....
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 34555677888999999999887 999999999999999999999988877776654
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=6.5e-06 Score=82.29 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=34.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.++.| ++|+||||+|||||+++|++...+..+++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 3567778888877 89999999999999999999876555544
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=4.6e-06 Score=84.28 Aligned_cols=100 Identities=28% Similarity=0.370 Sum_probs=59.8
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc-chhhHHHHHHHHHhcCCceeehhHHHHhhhhc
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVGRER 526 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r 526 (804)
..|++|+||+|+|||+|+.+++.++ +.+...++..+++...-.. ........++... .+++++|||+.....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~-- 122 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL-- 122 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee--
Confidence 3569999999999999999999865 7778888888887764321 1122334555544 346899999843211
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 527 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 527 ~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
. ......|+..++....+. -+|.|||..
T Consensus 123 -------~---~~~~~~l~~ii~~R~~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 123 -------S---EWEAELLFEIIDERYERK--PTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred -------c---ccccccchhhhhHhhccc--CeEeeCCCc
Confidence 1 123444555566544432 345588854
No 259
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.2e-05 Score=82.06 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=42.7
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
+...+....++..+++....| +.|+||||+|||||+|+|+|++.+..+.+...
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~ 61 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeC
Confidence 333345566778888888888 78999999999999999999998877766544
No 260
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.96 E-value=5.3e-06 Score=86.29 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=36.9
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
.++++++.+..| +.|+|++|||||||+++|+|-..+..+.|...
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 667788888888 88999999999999999999877766665443
No 261
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.96 E-value=9.4e-06 Score=83.72 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=36.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
|.+...+.++++.++.| ++|+||||+|||||++.|+|...+..+.+
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 33444678888888887 88999999999999999999775554544
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.96 E-value=1.1e-05 Score=80.32 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=34.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..++++++.+..| ++|+||||+|||||+++|++...+..+++
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4567788888877 89999999999999999999876554444
No 263
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=8.6e-06 Score=87.17 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=42.3
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+++...+.....+.++++.++.| +.|+||+|+|||||+|+|||-..+..++|..
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~ 61 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEE
Confidence 44455566666667888888888 8899999999999999999987766665543
No 264
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.95 E-value=9e-06 Score=84.98 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=46.7
Q ss_pred HHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 428 ~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+.++++...|.....+.++++.+..| +.|+||||+|||||+++|++...+..+++.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 80 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 56677777788888999999999888 889999999999999999997765555443
No 265
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.95 E-value=7.2e-06 Score=82.47 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=35.0
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.++.| ++|.||||+|||||+++|++...+..+++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 3577888888887 88999999999999999999876555544
No 266
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=6.4e-06 Score=82.88 Aligned_cols=43 Identities=30% Similarity=0.460 Sum_probs=35.2
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
...+.++++.++.| +.|+||||+|||||+++|++...+..+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 34678888888877 88999999999999999999876554443
No 267
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.94 E-value=1.6e-05 Score=81.87 Aligned_cols=160 Identities=25% Similarity=0.266 Sum_probs=84.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhcc---ceeeecc-chhhh----hh-------------hc-----------------
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISA-SQFVE----IY-------------VG----------------- 493 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~---~~~~i~~-s~~~~----~~-------------~g----------------- 493 (804)
..++|+||.|+|||+|++.+...+.. ..+.+.. ..... .. .+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 34899999999999999999987722 1222211 11000 00 00
Q ss_pred cchhhHHHHHHHHHhcC-CceeehhHHHHhh-hhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC-----
Q 003669 494 VGASRVRSLYQEAKDNA-PSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP----- 566 (804)
Q Consensus 494 ~~~~~l~~lf~~a~~~~-p~Il~IDEId~l~-~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~----- 566 (804)
.....+..+++.+.... ..+++|||++.+. ... .....+..|...++......++.+|.++...
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 01122345555555433 3689999999987 211 1223566666666654445555444333221
Q ss_pred -CCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCC-C-CChhcHHHHHhhCCCCc
Q 003669 567 -DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-M-ADDVDYLAVASMTDGMV 623 (804)
Q Consensus 567 -~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~-l-~~~~dl~~la~~t~G~s 623 (804)
..-...+.. |+.. +.+++.+.++..++++..+.... + .++.++..+...+.|..
T Consensus 172 ~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 172 FLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp TT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred hhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 112233433 7776 99999999999999999877651 1 25566777777777754
No 268
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.1e-05 Score=80.72 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=34.6
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..++++++.+..| +.|+||||+|||||++.|++...+..+.+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4677888888887 88999999999999999999775544443
No 269
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.93 E-value=0.0001 Score=85.67 Aligned_cols=163 Identities=21% Similarity=0.293 Sum_probs=85.8
Q ss_pred cCccCchhHHHHHHHHHHhcccc-ccccccC-cccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccchh----hhhh
Q 003669 418 SDVAGLGKIRLELEEIVKFFTHG-EMYRRRG-VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF----VEIY 491 (804)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~l~~~-~~~~~~g-l~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~----~~~~ 491 (804)
+.+.|++++|.++- ...|+.. ..+...| ++-.-+|||+|.||||||.+++.+.+-+..-.+ .++-.- ...|
T Consensus 429 PsIye~edvKkglL--LqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLTay 505 (804)
T KOG0478|consen 429 PSIYELEDVKKGLL--LQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLTAY 505 (804)
T ss_pred hhhhcccchhhhHH--HHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcceee
Confidence 34567777776653 2223221 2222222 222224999999999999999999986644322 221110 1112
Q ss_pred hccchhhHHHHHHHH---HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh------cc--cCCCceEEE
Q 003669 492 VGVGASRVRSLYQEA---KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD------GF--EGRGNVITI 560 (804)
Q Consensus 492 ~g~~~~~l~~lf~~a---~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld------~~--~~~~~viVI 560 (804)
+...... +++..+. .-...++-+|||+|++... .+.+|.+.+..=. ++ .-+.+.-|+
T Consensus 506 Vtrd~dt-kqlVLesGALVLSD~GiCCIDEFDKM~dS-----------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVL 573 (804)
T KOG0478|consen 506 VTKDPDT-RQLVLESGALVLSDNGICCIDEFDKMSDS-----------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVL 573 (804)
T ss_pred EEecCcc-ceeeeecCcEEEcCCceEEchhhhhhhHH-----------HHHHHHHHHHHhhhhHhhcceeeeccccceee
Confidence 2111110 1111110 1123458899999998443 1234444433210 11 113456788
Q ss_pred eecCCCC-------------CCCccccCCCccccccc-CCCCCHHHHHHHH
Q 003669 561 ASTNRPD-------------ILDPALVRPGRFDRKIF-IPKPGLIGRMEIL 597 (804)
Q Consensus 561 atTN~~~-------------~LdpaLlrpgRfd~~I~-~~~Pd~~eR~~Il 597 (804)
|+.|+.. .|+|.|++ |||.++- ++.||...-+.+.
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La 622 (804)
T KOG0478|consen 574 AAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLA 622 (804)
T ss_pred eeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHH
Confidence 8888543 67899999 9997664 4677765333333
No 270
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=2.7e-05 Score=84.26 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=80.3
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhcc----------------ceeeeccchhhhhhhccchhhHHHHHHHHHhc---
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV----------------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN--- 509 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~----------------~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~--- 509 (804)
+++.+++|+||.|+||+++|..+|..+-. ++..+....- ... -....++.+.+.+...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCc--CcHHHHHHHHHHHhhCccC
Confidence 56777999999999999999999986522 1111111000 000 0123345555554432
Q ss_pred -CCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCC
Q 003669 510 -APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 588 (804)
Q Consensus 510 -~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~P 588 (804)
..-|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~~--------------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD--------------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH--------------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 2358999999998765 7899999999 566788999888889999999998 433 5666654
No 271
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.92 E-value=3.6e-05 Score=91.69 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=63.1
Q ss_pred ceEEEeecCCC--CCCCccccCCCccc---ccccCC--CC-CHHHHHHHHHHHHccC---CCCChhcHHHHH------hh
Q 003669 556 NVITIASTNRP--DILDPALVRPGRFD---RKIFIP--KP-GLIGRMEILKVHARKK---PMADDVDYLAVA------SM 618 (804)
Q Consensus 556 ~viVIatTN~~--~~LdpaLlrpgRfd---~~I~~~--~P-d~~eR~~Il~~~l~~~---~l~~~~dl~~la------~~ 618 (804)
++.||+++|.. ..+||+|.. ||. ..+.|+ .+ +.+.+..+++...+.. .....++-..++ .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56788888764 567899987 765 445553 22 3455556665333221 111223322222 12
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 003669 619 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (804)
Q Consensus 619 t~G------~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (804)
..| ..-++|..++++|...|...+...++.+|+.+|..+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 222 346899999999999999999999999999988754
No 272
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=1.3e-05 Score=85.14 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccc--hhhHHHHHHHHHhcCCceeehhHHHHhhhhc
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG--ASRVRSLYQEAKDNAPSVVFIDELDAVGRER 526 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~--~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r 526 (804)
.+++|+||||||||+|+.+|+..+ +..++.++..++........ ......+++.+ ...++|+|||+......
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 469999999999999999999977 56677787777666432110 00112334333 34569999998543211
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 527 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 527 ~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
+. ....|+..++.-..+ ..-+|.|||..
T Consensus 179 --------~~---~~~~l~~ii~~R~~~-~~ptiitSNl~ 206 (248)
T PRK12377 179 --------KN---EQVVLNQIIDRRTAS-MRSVGMLTNLN 206 (248)
T ss_pred --------HH---HHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 11 344555555643332 23456678854
No 273
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.92 E-value=3.5e-06 Score=86.96 Aligned_cols=46 Identities=28% Similarity=0.401 Sum_probs=36.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+.....++++++.+..| ++|.||||+|||||++.|++.+.+..+++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v 57 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 33445678888888887 88999999999999999999876554544
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.91 E-value=1.5e-05 Score=80.01 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=45.1
Q ss_pred HHHHHHhccc-cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 430 LEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 430 l~~lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
++++.+.|.+ +..+.++++++++| ++++||+|+|||||+|.|.++..+.-+.+...
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~ 62 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEEC
Confidence 4566777654 44788999999998 88899999999999999999887776665444
No 275
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=7.8e-06 Score=86.61 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=49.3
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc---chhhHHHHHHHHHhcCCceeehhHHHHh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~---~~~~l~~lf~~a~~~~p~Il~IDEId~l 522 (804)
.+++|+|++|||||+|+.+|+..+ +..+..++..++....... .......+++... .+++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 469999999999999999999977 6778888888877543221 1112234555443 4679999998654
No 276
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=2.7e-06 Score=88.37 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=36.3
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+++.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 62 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 35678888998887 889999999999999999998765555543
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.89 E-value=1.1e-05 Score=89.25 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=60.8
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc---chhhHHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~---~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
.+++|+||+|+|||+|+.+||.++ +..+++++..++....... ........++.+. ..++|+|||+......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCCC
Confidence 569999999999999999999976 6678888888876653211 0111111233333 3469999998554211
Q ss_pred cCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC
Q 003669 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (804)
Q Consensus 526 r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~ 565 (804)
+. ....|+..++....... -+|.|||.
T Consensus 262 ---------~~---~~~~Lf~iin~R~~~~k-~tIiTSNl 288 (329)
T PRK06835 262 ---------EF---SKSELFNLINKRLLRQK-KMIISTNL 288 (329)
T ss_pred ---------HH---HHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 11 34555566665443333 35556664
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.89 E-value=1.7e-05 Score=79.99 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.9
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhh
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~ 473 (804)
..++++++.++.| +.|+||||+|||||+++++.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3567888899888 88999999999999999974
No 279
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.89 E-value=4.9e-06 Score=87.46 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=37.3
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 58 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 44445678888888887 88999999999999999999876555544
No 280
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.88 E-value=2.2e-06 Score=95.32 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=45.2
Q ss_pred HHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 428 ~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+.++++.+.|.+...++++++.++.| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~ 99 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE
Confidence 44566666666667889999999988 889999999999999999998766655543
No 281
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.88 E-value=4e-06 Score=91.93 Aligned_cols=53 Identities=25% Similarity=0.279 Sum_probs=41.7
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+++.+.|.+...++++++.++.| +.|+||||+|||||+++|++.+.+.-+.+.
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~ 65 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 34444455556788899999888 899999999999999999998766655543
No 282
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.87 E-value=7.2e-06 Score=85.64 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=45.8
Q ss_pred HHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 429 ~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+++++.+.|.+....+++++.++.| ++|+||+||||||++|.|-+-..+..+.|
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I 58 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence 3456777788888899999999998 88999999999999999998777666554
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=5.6e-05 Score=73.19 Aligned_cols=110 Identities=26% Similarity=0.321 Sum_probs=59.1
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhh----------------------hccc-hhhH-HHHHHHH
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----------------------VGVG-ASRV-RSLYQEA 506 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~----------------------~g~~-~~~l-~~lf~~a 506 (804)
++|+||||+|||+++..+++.. +.+.+.++........ .... .... ......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999998876 4455555554332210 0000 0000 1123444
Q ss_pred HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC
Q 003669 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 507 ~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
....|.+++|||+..+..................+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 5567889999999988643210000111122233334433332 34666666665543
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.86 E-value=1.9e-05 Score=84.28 Aligned_cols=69 Identities=30% Similarity=0.512 Sum_probs=47.3
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhccch-hhHH-HHHHHHHhcCCceeehhHHHH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGA-SRVR-SLYQEAKDNAPSVVFIDELDA 521 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~~~-~~l~-~lf~~a~~~~p~Il~IDEId~ 521 (804)
..+++|+||||+|||+|+-+|+.++ |..+..++..+++...-.... +... .+...+ ...++++|||+-.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccC
Confidence 4569999999999999999999877 678888888888765321111 1111 122212 3356999999854
No 285
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.85 E-value=4.7e-06 Score=88.77 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=36.9
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+.-+.+
T Consensus 14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i 61 (251)
T PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61 (251)
T ss_pred ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 43445678888888877 99999999999999999999875555544
No 286
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.84 E-value=2.3e-05 Score=85.92 Aligned_cols=69 Identities=28% Similarity=0.432 Sum_probs=48.2
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc-chhhHHHHHHHHHhcCCceeehhHHHH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 521 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~IDEId~ 521 (804)
..|++|+||+|||||+|+.+||.++ |.++..+.+.+++...... ....+...++.+. ..++|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 4679999999999999999999987 6777777777776543211 1112334444433 346999999844
No 287
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.83 E-value=2.9e-05 Score=77.72 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=34.6
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.++.| +.|+||||+|||||+++|++...+..+.+
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 3567788888877 88999999999999999999876555544
No 288
>PRK06921 hypothetical protein; Provisional
Probab=97.83 E-value=1.9e-05 Score=84.90 Aligned_cols=68 Identities=28% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhh----ccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 521 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el----~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~ 521 (804)
..+++|+||+|+|||+|+.+||+++ +..+++++..++....... .......++.. ...++|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 3469999999999999999999976 4566677766554432111 11112222322 2356999999943
No 289
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.83 E-value=1.3e-05 Score=87.53 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=37.5
Q ss_pred cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 438 ~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~ 51 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR 51 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3345678888998888 889999999999999999998866655544
No 290
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=1.9e-05 Score=82.15 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=37.5
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 58 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 33445677888888877 889999999999999999998766555543
No 291
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.2e-05 Score=79.47 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=33.2
Q ss_pred ccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 443 ~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..++++....| +.|.||||+||||++|.||.-+.+..+.+..
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i 61 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEE
Confidence 34556666666 7899999999999999999988776665543
No 292
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.82 E-value=0.00021 Score=83.50 Aligned_cols=29 Identities=41% Similarity=0.617 Sum_probs=25.6
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
++|+||+||||||+++.||.+++..+.+-
T Consensus 48 LlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 78899999999999999999998766553
No 293
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.81 E-value=2e-05 Score=80.97 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=37.5
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+.....+.++++.++.| ++|+||||+|||||++.|++...+..+.+.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~ 59 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL 59 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 33445678888998888 889999999999999999998765555443
No 294
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.80 E-value=2.2e-05 Score=82.70 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=39.3
Q ss_pred HhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 435 ~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..+.....+.++++.++.| ++|+||||+|||||+++|++...+..+++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 79 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR 79 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3345566788999999887 889999999999999999997765555443
No 295
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=6.3e-06 Score=92.20 Aligned_cols=44 Identities=30% Similarity=0.481 Sum_probs=36.1
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
...+.++++.++.| +.|+||||+|||||+++|||...+..++|.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~ 62 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 34667788888877 889999999999999999998766655543
No 296
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.79 E-value=7.6e-05 Score=85.97 Aligned_cols=178 Identities=23% Similarity=0.308 Sum_probs=103.0
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchhhH-------HHHHHHHHhcCCceeehh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~ID 517 (804)
.+++.|++||||+++++++.... +.+++.++|..+... .+|...+.. ...+. ....+++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld 244 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLD 244 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEe
Confidence 48999999999999999997643 568999999876432 222111100 01122 2234589999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc-----C----CCceEEEeecCCCC-------CCCccccCCCcccc
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGNVITIASTNRPD-------ILDPALVRPGRFDR 581 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~-----~----~~~viVIatTN~~~-------~LdpaLlrpgRfd~ 581 (804)
||+.+... ....|+..++... . ..++-||++||..- .+.+.+.. |+.
T Consensus 245 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~- 307 (457)
T PRK11361 245 EIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN- 307 (457)
T ss_pred chhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99998655 5666666665311 1 13578888887531 22333322 332
Q ss_pred cccCCCCCHHHHHH----HHHHHHccC----CC----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 582 KIFIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~l----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
.+.+..|...+|.+ ++..++... .. .....+..+..+.-.-+.++|.++++.|... .....|+.+
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~~ 384 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM---NSGPIIFSE 384 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh---CCCCcccHH
Confidence 35566666666644 333333221 11 1122234445554445778999999888753 334467877
Q ss_pred HHHH
Q 003669 650 DLLQ 653 (804)
Q Consensus 650 di~~ 653 (804)
++-.
T Consensus 385 ~l~~ 388 (457)
T PRK11361 385 DLPP 388 (457)
T ss_pred HChH
Confidence 7643
No 297
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.79 E-value=1.9e-05 Score=84.44 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=38.1
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 343445678888888887 889999999999999999998766555543
No 298
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.77 E-value=0.00019 Score=77.31 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=98.1
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh--hhccch-hhHHHHHHHHHh-------cCCceeehhHHHHh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA-SRVRSLYQEAKD-------NAPSVVFIDELDAV 522 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--~~g~~~-~~l~~lf~~a~~-------~~p~Il~IDEId~l 522 (804)
+.|++||||+|||+...+.|..+..+...-++--.++. --|-.. ..-...|...+. ..+..+++||.|.+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 68999999999999999999987554221111100110 001110 011223444432 25668999999998
Q ss_pred hhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHc
Q 003669 523 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (804)
Q Consensus 523 ~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~ 602 (804)
..+ ..+.|-..+..+. .++-|..-+|++..+.|++.+ |+. .+.|.+.+...-...+..++.
T Consensus 144 T~~--------------AQnALRRviek~t--~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 144 TRD--------------AQNALRRVIEKYT--ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred hHH--------------HHHHHHHHHHHhc--cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 655 6777777777554 455556677999999999988 665 566667777777777777776
Q ss_pred cCCCCChh-cHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003669 603 KKPMADDV-DYLAVASMTDGMVGAELANIVEVAAINM 638 (804)
Q Consensus 603 ~~~l~~~~-dl~~la~~t~G~sg~DL~~Lv~~A~~~A 638 (804)
........ -...++... -.|+...++.....+
T Consensus 205 ~e~~~~~~~~~~a~~r~s----~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 205 SEQKETNPEGYSALGRLS----VGDMRVALNYLQSIL 237 (360)
T ss_pred cchhhcCHHHHHHHHHHh----HHHHHHHHHHHHHHH
Confidence 54433221 123333333 346655555544333
No 299
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=3.1e-05 Score=81.65 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.0
Q ss_pred ccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccch
Q 003669 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (804)
Q Consensus 443 ~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~ 486 (804)
..++++.+|.| ++|+||||+||||++|.|.|.+-+..+.+....
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 36788999998 899999999999999999998877766665443
No 300
>PF05729 NACHT: NACHT domain
Probab=97.77 E-value=0.00012 Score=71.45 Aligned_cols=139 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred EEEECCCCCChhHHHHHHhhhhc---------cceeeeccchhhhh------------hhccchhhHHHHH-HHHHhcCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI------------YVGVGASRVRSLY-QEAKDNAP 511 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~---------~~~~~i~~s~~~~~------------~~g~~~~~l~~lf-~~a~~~~p 511 (804)
++|+|++|+|||++++.++..+. ...+.+.+...... ............+ ........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999987551 11223333332221 0011111111111 22234455
Q ss_pred ceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCC--CCCccccCCCcccccccCCCCC
Q 003669 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPG 589 (804)
Q Consensus 512 ~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~--~LdpaLlrpgRfd~~I~~~~Pd 589 (804)
.+++||.+|.+...... .........+...+.. ....++-++.|+.... .+...+.. ...+.+++.+
T Consensus 83 ~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred eEEEEechHhcccchhh------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 68899999998653211 1111122222222332 1122333443333221 22222222 1467888999
Q ss_pred HHHHHHHHHHHHcc
Q 003669 590 LIGRMEILKVHARK 603 (804)
Q Consensus 590 ~~eR~~Il~~~l~~ 603 (804)
.++..++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 301
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=2.5e-05 Score=81.42 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=35.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..++..++.+++| +.++||+|||||||++.|++-..+..+.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 4567888999988 88999999999999999999776665553
No 302
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=2.6e-05 Score=80.61 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=76.2
Q ss_pred HHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc--hhhhh-----------hhcc
Q 003669 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS--QFVEI-----------YVGV 494 (804)
Q Consensus 430 l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s--~~~~~-----------~~g~ 494 (804)
++++...|.....+..+++.++.| +.|+|+||+|||||+++|+|...+..++|.+. ++... |+.+
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 344555677777888999999988 89999999999999999999887766666533 22111 3333
Q ss_pred chhhHH--HHHHHHH------hc-CCceeehhHHHHhhhh------cCCCCCCCcchhHHHHHHHHHhhhcccCCCceEE
Q 003669 495 GASRVR--SLYQEAK------DN-APSVVFIDELDAVGRE------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (804)
Q Consensus 495 ~~~~l~--~lf~~a~------~~-~p~Il~IDEId~l~~~------r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viV 559 (804)
+..-+. ++-++.. .. ...--.+|++..+++. +....-|||+.+-..+...| ..+.++++
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL------m~~PklLL 159 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL------MSRPKLLL 159 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH------hcCCCEEE
Confidence 322111 1111111 00 1111226777777653 22334488988877777666 45566665
Q ss_pred E
Q 003669 560 I 560 (804)
Q Consensus 560 I 560 (804)
+
T Consensus 160 L 160 (237)
T COG0410 160 L 160 (237)
T ss_pred e
Confidence 5
No 303
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.75 E-value=3.4e-05 Score=78.83 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=35.0
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh--ccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el--~~~~~~i 482 (804)
..+.++++.+..| ++|.||||+|||||++.|++.. .+.-+++
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i 68 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence 4677888888877 8899999999999999999987 6555544
No 304
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.73 E-value=3.4e-05 Score=79.16 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=35.7
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+...+.++++.++.| +.|+|+||+|||||++.|++...+..+.+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV 57 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344677888888887 89999999999999999999875554444
No 305
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.72 E-value=2.5e-05 Score=75.31 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=54.3
Q ss_pred cEEEECCCCCChhHHHHHHhhhhcc---ceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~---~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~ 529 (804)
.|+|+|++||||+++|++|....+. +++.+++.... ..+++.+ ..+.++|+|+|.+...
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---- 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---- 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH----
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH----
Confidence 4899999999999999999886543 55666665422 2344443 5568999999998655
Q ss_pred CCCCcchhHHHHHHHHHhhhcccCCCceEEEeecC
Q 003669 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (804)
Q Consensus 530 ~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN 564 (804)
....|+..++... ..++-+|+++.
T Consensus 85 ----------~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 85 ----------AQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp ----------HHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ----------HHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 5556666665432 34555565554
No 306
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=2.7e-05 Score=86.95 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=37.6
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|.+...+.++++.+..| ++|+||||||||||+++|+|...+..+.|.
T Consensus 16 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 64 (351)
T PRK11432 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64 (351)
T ss_pred ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 43444577788888877 899999999999999999998866665543
No 307
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.71 E-value=2.8e-05 Score=86.95 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=37.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|.+...+.++++.++.| +.|+||||+|||||+++|||...+..+.+.
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 44444567788888777 889999999999999999998766655543
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.71 E-value=1.9e-05 Score=80.56 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=32.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+. +++.++.| ++|+||||+|||||+++|+|...+..+.+
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3444 77888777 89999999999999999999875554443
No 309
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.71 E-value=0.00057 Score=77.20 Aligned_cols=226 Identities=19% Similarity=0.252 Sum_probs=126.8
Q ss_pred cCccCchhHHHHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccc
Q 003669 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (804)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~ 495 (804)
+++.|..+++..+.=+. ++.......-|.++.+. |+|.|.||+.||-|++.+.+-.....++.--+. ..+|-+
T Consensus 342 PEIyGheDVKKaLLLlL--VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLL--VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHh--hCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 45667777775554332 23333334467777665 999999999999999999875543333221111 112222
Q ss_pred hhhHHH-HHHH------H-HhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHh----hh--cc--cCCCceEE
Q 003669 496 ASRVRS-LYQE------A-KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC----LD--GF--EGRGNVIT 559 (804)
Q Consensus 496 ~~~l~~-lf~~------a-~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~----ld--~~--~~~~~viV 559 (804)
..-+++ +... | --...+|-+|||+|++.... +..+...+.. +. ++ .-+.++-|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 111100 0000 0 00123578999999985431 2233333322 11 11 11345677
Q ss_pred EeecCCCC-------------CCCccccCCCcccccccC-CCCCHHHHHHHHHH----HHccCCCC---ChhcH------
Q 003669 560 IASTNRPD-------------ILDPALVRPGRFDRKIFI-PKPGLIGRMEILKV----HARKKPMA---DDVDY------ 612 (804)
Q Consensus 560 IatTN~~~-------------~LdpaLlrpgRfd~~I~~-~~Pd~~eR~~Il~~----~l~~~~l~---~~~dl------ 612 (804)
+++.|+.. .|+++|++ |||...-+ +.|+.+.-..+.++ |.....-. +.++.
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 88888643 77899999 99976544 56766554444442 22211110 00110
Q ss_pred ----------------HHH----------Hh--hCC-CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 003669 613 ----------------LAV----------AS--MTD-GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 613 ----------------~~l----------a~--~t~-G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g 661 (804)
+.+ ++ ... -.|++.|..+++.+...|..+-...+..+|+.+|+......
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 000 00 011 24678899999988888888888889999999999877654
No 310
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=4.2e-05 Score=77.10 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=34.9
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.+.++++.+..| +.+.||+|||||||++.+||...+.-+++.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~ 63 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE
Confidence 567778888877 889999999999999999998866655554
No 311
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.70 E-value=2.7e-05 Score=87.57 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=37.4
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~ 61 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 33444677888888877 889999999999999999998766555543
No 312
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.70 E-value=6.9e-05 Score=86.51 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=102.5
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchhhHHHH----HHHHHhcCCceeehhHHH
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRVRSL----YQEAKDNAPSVVFIDELD 520 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~~l~~l----f~~a~~~~p~Il~IDEId 520 (804)
.+++.|.+||||+++++++.... +.+|+.++|+.+... .+|...+.+... .........+.+|||||+
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 48999999999999999997754 568999999876432 222211110000 000112235689999999
Q ss_pred HhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCCC-------CCCccccCCCccc-ccc
Q 003669 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFD-RKI 583 (804)
Q Consensus 521 ~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~~-------~LdpaLlrpgRfd-~~I 583 (804)
.+... ....|+..++... ...++-||++|+..- .+.+.|.. |+. ..|
T Consensus 239 ~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 239 DMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred hCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 98654 4556665555311 112567788876431 23333333 343 244
Q ss_pred cCCCCC--HHHHHHHHHHHHccC----CC----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 003669 584 FIPKPG--LIGRMEILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (804)
Q Consensus 584 ~~~~Pd--~~eR~~Il~~~l~~~----~l----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (804)
.+|+.. .++...++..++... .. -...-+..|..+.-.-+.++|.++++.|+..+ ....|+.+|+-.
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~ 379 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPA 379 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchH
Confidence 444443 234444555544322 11 11222444444443345689999999887544 334688888754
Q ss_pred HH
Q 003669 654 AA 655 (804)
Q Consensus 654 Al 655 (804)
.+
T Consensus 380 ~~ 381 (463)
T TIGR01818 380 EL 381 (463)
T ss_pred HH
Confidence 43
No 313
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=1.3e-05 Score=89.36 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=36.5
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
...+.++++.++.| +.|+||||+|||||+++|++...+..+.+.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~ 63 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 34678889999888 889999999999999999998766555543
No 314
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.67 E-value=0.00044 Score=79.10 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=26.8
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+||+||+||||||.++.|+.++|..++.-.
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 889999999999999999999988776544
No 315
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.67 E-value=0.00018 Score=83.26 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=105.3
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh-----hhccchhhH-------HHHHHHHHhcCCceeehh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~ID 517 (804)
.+++.|++|||||+++++|.... +.+|+.++|+.+... .+|...+.. ...|+ ....+.+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEe
Confidence 38999999999999999998765 468999999876332 222211100 00122 2234579999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCC-------CCCCccccCCCcccc
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~-------~~LdpaLlrpgRfd~ 581 (804)
||+.+... ....|+..++... ...++-+|+||+.. ..+.+.|.. ||.
T Consensus 240 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 302 (469)
T PRK10923 240 EIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN- 302 (469)
T ss_pred ccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99998655 5566666665321 11346788888653 134445554 553
Q ss_pred cccCCCCCHHHHHH----HHHHHHccC----CC----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 582 KIFIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~l----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
.+.+..|...+|.+ ++..++... .. ....-+..|..+.-.-+.++|+++++.+...+ ....|+.+
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~ 379 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQ 379 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHH
Confidence 34444555555443 444444321 11 12223455555555567789999998887543 34468888
Q ss_pred HHHH
Q 003669 650 DLLQ 653 (804)
Q Consensus 650 di~~ 653 (804)
|+-.
T Consensus 380 ~l~~ 383 (469)
T PRK10923 380 DLPG 383 (469)
T ss_pred HCcH
Confidence 8743
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=4.3e-05 Score=87.12 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=57.8
Q ss_pred cccCcccccc-CccCchhHHHHHHHHHHhccccc--cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 409 LERGVDVKFS-DVAGLGKIRLELEEIVKFFTHGE--MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 409 ~~~~~~~~f~-~~~gl~~~~~~l~~lv~~l~~~~--~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.+..+...|+ +...-.....+++++...|.++. .++++++.+..| +.++|++|||||||++.+++...+.-+++.
T Consensus 317 ~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 317 LDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred ccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 3444555555 21222222677788888887655 889999999988 999999999999999999998887777766
Q ss_pred cch
Q 003669 484 ASQ 486 (804)
Q Consensus 484 ~s~ 486 (804)
.+.
T Consensus 397 ~~g 399 (573)
T COG4987 397 LNG 399 (573)
T ss_pred ECC
Confidence 544
No 317
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=1.3e-05 Score=90.23 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=37.6
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+...+.+...+.++++.+..| +.|+||||||||||+++|||...+.-+++
T Consensus 25 v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I 76 (377)
T PRK11607 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76 (377)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 333344444567788888777 88999999999999999999876555544
No 318
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.67 E-value=3.1e-05 Score=87.23 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=35.0
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
...+.++++.+..| +.|+||||||||||+++|||...+.-+.|
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I 71 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 34567788888877 88999999999999999999776655544
No 319
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.66 E-value=4e-05 Score=85.93 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=37.4
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccce--eeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF--FSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~--~~i~ 483 (804)
|.....++++++.++.| +.|+||||+|||||+++|||...+.. +.+.
T Consensus 15 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~ 65 (362)
T TIGR03258 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65 (362)
T ss_pred ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE
Confidence 33344677888888877 88999999999999999999776665 5543
No 320
>PRK15115 response regulator GlrR; Provisional
Probab=97.64 E-value=0.00016 Score=83.09 Aligned_cols=179 Identities=21% Similarity=0.273 Sum_probs=104.9
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhh-----hccchhhH-------HHHHHHHHhcCCceeehh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASRV-------RSLYQEAKDNAPSVVFID 517 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~-----~g~~~~~l-------~~lf~~a~~~~p~Il~ID 517 (804)
.+++.|++|+|||++|+++.... +.+|+.++|..+.... +|...+.. ..+++ ....+.+|||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 235 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFLD 235 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEEE
Confidence 48999999999999999997754 5789999998754321 11111100 00121 2234589999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc---------CCCceEEEeecCCCCCCCccccCCCcccc-------
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDILDPALVRPGRFDR------- 581 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~---------~~~~viVIatTN~~~~LdpaLlrpgRfd~------- 581 (804)
||+.+... ....|+..++... ...++.+|++|+.. ++. ++..|+|..
T Consensus 236 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 236 EIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPK-AMARGEFREDLYYRLN 298 (444)
T ss_pred ccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHH-HHHcCCccHHHHHhhc
Confidence 99998655 5566666665311 01257888888752 222 222344421
Q ss_pred cccCCCCCHHHHHH----HHHHHHccC----C--C--CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 003669 582 KIFIPKPGLIGRME----ILKVHARKK----P--M--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (804)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~--l--~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~e 649 (804)
.+.+..|...+|.+ +++.++... . . ..+.-+..|..+.-.-+.++|.++++.|+.. .....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TSSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCccChh
Confidence 34455667777643 334444321 1 1 1222345555555455788999999888653 334468888
Q ss_pred HHHHH
Q 003669 650 DLLQA 654 (804)
Q Consensus 650 di~~A 654 (804)
++...
T Consensus 376 ~l~~~ 380 (444)
T PRK15115 376 LVEQA 380 (444)
T ss_pred hhhhh
Confidence 77543
No 321
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.64 E-value=1.6e-05 Score=90.14 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=39.8
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+...|.+...++++++.+..| +.|+||||+|||||+|+|++.+.+..+.+
T Consensus 9 ls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I 60 (402)
T PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60 (402)
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 333455566788899999888 88999999999999999999876555444
No 322
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.63 E-value=3.9e-05 Score=86.00 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+.....+.++++.++.| ++|+||||+|||||+++|++...+..+.+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I 50 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI 50 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE
Confidence 34445678889999988 89999999999999999999876655544
No 323
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.63 E-value=8.7e-05 Score=89.60 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=81.2
Q ss_pred HHHHHHHhccc--cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh------------hh
Q 003669 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YV 492 (804)
Q Consensus 429 ~l~~lv~~l~~--~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~------------~~ 492 (804)
.++++...|.. +..+.++++.+++| +.++|++|||||||+|.+.|-..+..|.|.....--. |+
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 33445555543 35788899999999 9999999999999999999988777666654432111 11
Q ss_pred ccchhh-HHHHHHHHHhcCCceeehhHHHHhhhh-------------------cCCCCCCCcchhHHHHHHHHHhhhccc
Q 003669 493 GVGASR-VRSLYQEAKDNAPSVVFIDELDAVGRE-------------------RGLIKGSGGQERDATLNQLLVCLDGFE 552 (804)
Q Consensus 493 g~~~~~-l~~lf~~a~~~~p~Il~IDEId~l~~~-------------------r~~~~~sgge~~~~~l~~LL~~ld~~~ 552 (804)
.+..-- -+++.+...-..|.. -.+|+-..+.. .++..-|||++++..+...+ .
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL------l 625 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL------L 625 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh------c
Confidence 111110 134555555555542 23344332211 11122389999999998888 5
Q ss_pred CCCceEEE-eecCCCC
Q 003669 553 GRGNVITI-ASTNRPD 567 (804)
Q Consensus 553 ~~~~viVI-atTN~~~ 567 (804)
.+++++++ .+|+..|
T Consensus 626 ~~P~ILlLDEaTSaLD 641 (709)
T COG2274 626 SKPKILLLDEATSALD 641 (709)
T ss_pred cCCCEEEEeCcccccC
Confidence 66677776 5555443
No 324
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.63 E-value=5.5e-05 Score=75.57 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=32.9
Q ss_pred ccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 445 ~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+++.++.| +.+.||+|+|||||+..|||...+..+.+..
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i 58 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEE
Confidence 456677777 9999999999999999999988776666543
No 325
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=6.8e-05 Score=77.10 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=31.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
..+.++++.++.| ++|+||||+|||||++.|++...
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4567888888877 88999999999999999999865
No 326
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.61 E-value=5.1e-05 Score=82.99 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=38.6
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+++.
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~ 60 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ 60 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 44455778888999888 889999999999999999998766666553
No 327
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=5.9e-05 Score=81.06 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=34.2
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
.+.++++.+..| ++|.||||+|||||+++|+|...+.-+.+
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i 66 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 567888888877 88999999999999999999876554444
No 328
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.60 E-value=6.7e-05 Score=80.58 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=35.4
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
...+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 45678889999888 88999999999999999999875544433
No 329
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.60 E-value=6.1e-05 Score=84.97 Aligned_cols=53 Identities=30% Similarity=0.254 Sum_probs=43.3
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.++.+.+.....+.++++.++.| +.|+||||+|||||+++|++...+..+++.
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~ 82 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL 82 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 34556677777788999999988 889999999999999999998766655443
No 330
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=5.8e-05 Score=81.19 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=34.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4678888888877 88999999999999999999876554443
No 331
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.59 E-value=0.00015 Score=81.25 Aligned_cols=143 Identities=22% Similarity=0.321 Sum_probs=82.6
Q ss_pred CcccCCcEEEECCCCCChhHHHHHHhhhhcc-ceeeeccchhhhhhh------ccchhhHHHHHHHHHhcCCceeehhHH
Q 003669 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYV------GVGASRVRSLYQEAKDNAPSVVFIDEL 519 (804)
Q Consensus 447 gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~-~~~~i~~s~~~~~~~------g~~~~~l~~lf~~a~~~~p~Il~IDEI 519 (804)
....|+|+.|+||.|+|||.|+-+....+.. .-.++...+|+.... ......+..+-+..... ..+|+|||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeee
Confidence 3456899999999999999999999887754 333444445543311 11112233333333333 348999998
Q ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHH
Q 003669 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 599 (804)
Q Consensus 520 d~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~ 599 (804)
+--... .-.++..|+..+= ..++++|+|+|.+ |..|. ++.+.+....| -..+|+.
T Consensus 137 ~V~Dia-----------DAmil~rLf~~l~----~~gvvlVaTSN~~---P~~Ly-~~gl~r~~Flp------~I~~l~~ 191 (362)
T PF03969_consen 137 QVTDIA-----------DAMILKRLFEALF----KRGVVLVATSNRP---PEDLY-KNGLQRERFLP------FIDLLKR 191 (362)
T ss_pred eccchh-----------HHHHHHHHHHHHH----HCCCEEEecCCCC---hHHHc-CCcccHHHHHH------HHHHHHh
Confidence 542111 0225566665543 4678999999964 22222 33343333222 3556777
Q ss_pred HHccCCCCChhcHHHH
Q 003669 600 HARKKPMADDVDYLAV 615 (804)
Q Consensus 600 ~l~~~~l~~~~dl~~l 615 (804)
++.-..+....|+...
T Consensus 192 ~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRR 207 (362)
T ss_pred ceEEEEecCCCchhhh
Confidence 7766666666666543
No 332
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=3.2e-05 Score=78.84 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
..++++++.+..| ++|+||||+|||||++.|++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677888888877 8899999999999999999853
No 333
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.59 E-value=0.00014 Score=74.95 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.3
Q ss_pred cccCcccCCcEEEECCCCCChhHHHHHHhhhh
Q 003669 444 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 444 ~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el 475 (804)
.++.+....-++|+||||+|||||+|.|++..
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44444443448999999999999999998743
No 334
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.58 E-value=9.4e-05 Score=75.92 Aligned_cols=37 Identities=35% Similarity=0.565 Sum_probs=32.0
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
+...+.++++.+..| ++|+||||+|||||++.|++..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678888888877 8899999999999999999973
No 335
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00042 Score=75.23 Aligned_cols=128 Identities=17% Similarity=0.239 Sum_probs=83.1
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccc-------eeee-ccchhhh-----h-hh---c--cchhhHHHHHHHHHh-
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-SASQFVE-----I-YV---G--VGASRVRSLYQEAKD- 508 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~-------~~~i-~~s~~~~-----~-~~---g--~~~~~l~~lf~~a~~- 508 (804)
+++.+++|+|| +||+++|+.+|..+-.. .+.. +|..+.. . ++ | -....++.+.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 68999999999855211 1111 0111100 0 11 1 112345665555543
Q ss_pred ---cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccC
Q 003669 509 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 585 (804)
Q Consensus 509 ---~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~ 585 (804)
....|++||++|.+... ..|.||..++ .+..++++|.+|+.++.+-|.++++++ .|.|
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~SRcq---~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKSRTQ---IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHHcce---eeeC
Confidence 22458999999998655 7899999999 456678899889889999999999443 7777
Q ss_pred CCCCHHHHHHHHH
Q 003669 586 PKPGLIGRMEILK 598 (804)
Q Consensus 586 ~~Pd~~eR~~Il~ 598 (804)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555455553
No 336
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=5.9e-05 Score=81.60 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=35.2
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i 64 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 3678888888887 88999999999999999999876655544
No 337
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=3.2e-05 Score=81.57 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=36.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..+.+.++.++.| ++|+||||+|||||++.+++-+.+..+.+.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~ 62 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE
Confidence 4567778888877 999999999999999999998877766653
No 338
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.57 E-value=5.6e-05 Score=84.19 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=35.8
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+.++++.++.| +.|+||||+|||||+++|++...+..+++
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I 62 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV 62 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4678889999887 88999999999999999999876665554
No 339
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.57 E-value=9.3e-05 Score=78.55 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=69.2
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccchh----------hhh-----------------hh
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF----------VEI-----------------YV 492 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~----------~~~-----------------~~ 492 (804)
...++++.+..| +.|+|.+||||||++|.|.+-..+..+.|....- .+. |.
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryP 107 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYP 107 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence 345678888877 8899999999999999999988877776654421 110 11
Q ss_pred ccchh--hHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCC
Q 003669 493 GVGAS--RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (804)
Q Consensus 493 g~~~~--~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~ 565 (804)
.+-.+ +.|-.+..|....|.+++.||.-+.+... +..+.++.|..+...-++..+..|+.
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DEpvSaLDvS-------------iqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADEPVSALDVS-------------VQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh-------------HHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 11111 11335556667789999999987765431 33444444444334444555555543
No 340
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.55 E-value=0.00016 Score=82.96 Aligned_cols=183 Identities=22% Similarity=0.218 Sum_probs=103.2
Q ss_pred CcEEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhh-----hccchhhH----HHHHHHHHhcCCceeehhHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASRV----RSLYQEAKDNAPSVVFIDEL 519 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~-----~g~~~~~l----~~lf~~a~~~~p~Il~IDEI 519 (804)
..++++|.+|+||+++++++.... +.+|+.++|+...... +|...+.+ ...........++++|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 348999999999999999997543 5789999998754331 22111100 00000012234678999999
Q ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHhhhccc--C-------CCceEEEeecCCCCCCCccccCCCcccc-------cc
Q 003669 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G-------RGNVITIASTNRPDILDPALVRPGRFDR-------KI 583 (804)
Q Consensus 520 d~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~--~-------~~~viVIatTN~~~~LdpaLlrpgRfd~-------~I 583 (804)
+.+... ....|+..++... . ..++-+|++|+..- ..+..+|+|.. .+
T Consensus 243 ~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 243 GDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred ccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccc
Confidence 998665 5566666665321 0 12466777776531 12223344432 34
Q ss_pred cCCCCCHHHHHH----HHHHHHccC----CC----CChhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 003669 584 FIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 584 ~~~~Pd~~eR~~----Il~~~l~~~----~l----~~~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi 651 (804)
.+..|...+|.+ +++.++... .. .....+..+..+.-.-+.++|.++++.|+.. .....|+.+++
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l 382 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISEREL 382 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHhC
Confidence 555666666543 444444321 11 1222244445544344678888888887653 33446887777
Q ss_pred HHH
Q 003669 652 LQA 654 (804)
Q Consensus 652 ~~A 654 (804)
...
T Consensus 383 ~~~ 385 (441)
T PRK10365 383 PLA 385 (441)
T ss_pred chh
Confidence 443
No 341
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.55 E-value=0.00022 Score=73.39 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=62.2
Q ss_pred ccCCc--EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhhhcc-------------------c----hhhHH
Q 003669 449 RIPGG--ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-------------------G----ASRVR 500 (804)
Q Consensus 449 ~i~~g--vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~~g~-------------------~----~~~l~ 500 (804)
-+|.| +.|+||||+|||+|+..++... +...++++..++....+.+ . ...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 34544 8899999999999998887543 5567777765421110000 0 01122
Q ss_pred HHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecC
Q 003669 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (804)
Q Consensus 501 ~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN 564 (804)
.+.+.+....+++++||-|..+..... . +........+..++..|..+....++.+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~--~-~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLEL--S-DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHh--C-CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 333334455788999999988754211 1 111112223344444444444456777777654
No 342
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00022 Score=75.77 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=79.4
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhccceeeeccch------hhhh------hh-----ccchhhHHHHHHHHHh---
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ------FVEI------YV-----GVGASRVRSLYQEAKD--- 508 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~------~~~~------~~-----g~~~~~l~~lf~~a~~--- 508 (804)
.+|.++||+||.|+||..+|.++|..+-..-..-.|+. +... ++ .-....++.+.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 34667999999999999999999986521100001111 1100 10 0112334445444322
Q ss_pred --cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCC
Q 003669 509 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 586 (804)
Q Consensus 509 --~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~ 586 (804)
...-|++|+++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23468899999988655 7899999999 567789999999999999999999 543 45555
Q ss_pred CC
Q 003669 587 KP 588 (804)
Q Consensus 587 ~P 588 (804)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 343
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.002 Score=67.81 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred EEEECCCCCChhHHHHHHhhhhcc---ceeeeccch-----hhhhhhc--cc--hhhH--------HHHHHHHHh-cCCc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQ-----FVEIYVG--VG--ASRV--------RSLYQEAKD-NAPS 512 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~---~~~~i~~s~-----~~~~~~g--~~--~~~l--------~~lf~~a~~-~~p~ 512 (804)
+.++|+-|+|||++.|++...+.- ..+.++-.. +....+. .. ...+ +.+.+...+ ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 779999999999999977665532 222333222 1111111 11 0111 222333333 4457
Q ss_pred eeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCC------CcccccccCC
Q 003669 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRP------GRFDRKIFIP 586 (804)
Q Consensus 513 Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrp------gRfd~~I~~~ 586 (804)
++++||.+.+..+.. ..+..|.+.-++....-.++.++=. .|.+.++.+ -|++..|.++
T Consensus 134 ~l~vdEah~L~~~~l-----------e~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLNDSAL-----------EALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhChhHH-----------HHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEecC
Confidence 899999999865510 1222222222222222234444432 333322211 2788678999
Q ss_pred CCCHHHHHHHHHHHHccCCCCC----hhcHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 003669 587 KPGLIGRMEILKVHARKKPMAD----DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 587 ~Pd~~eR~~Il~~~l~~~~l~~----~~dl~~la~~t~G~sg~DL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (804)
+.+.++-...++.+++.....+ +--+..+...+.| .++-+.+++..|...|...+...|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999989999999987664432 2335556666776 788899999999999999898888876654
No 344
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.50 E-value=2.4e-05 Score=81.13 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=38.1
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.++.| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 35678888999887 8899999999999999999988776666643
No 345
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=8.1e-05 Score=80.30 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..++++++.+..| +.|+||||+|||||+++|+|...+..+.|
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 62 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 4678888888888 89999999999999999999876655544
No 346
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=7.6e-05 Score=80.70 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=34.4
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
.+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 677888888887 89999999999999999999875554443
No 347
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00021 Score=84.27 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=43.4
Q ss_pred HHHHHHHHhccc---cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 428 LELEEIVKFFTH---GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 428 ~~l~~lv~~l~~---~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
++.+++...|.. ...++++++++++| +.|+||+|.||||++..|-+...+..+.|
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 444555556643 34789999999988 99999999999999999998776666555
No 348
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.49 E-value=6.8e-05 Score=78.06 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=49.5
Q ss_pred HHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccch
Q 003669 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (804)
Q Consensus 430 l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~ 486 (804)
++++.+.|++.....++++.+|.| +.|.||||+||||..|.|.+.+.+.-++|++..
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g 63 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC
Confidence 456777888888889999999998 889999999999999999999988877776544
No 349
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=0.00012 Score=77.80 Aligned_cols=31 Identities=35% Similarity=0.435 Sum_probs=26.2
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.|+||||+|||||+++|++...+..+.+..
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~ 58 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 8899999999999999999987666555543
No 350
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.47 E-value=9.1e-05 Score=74.81 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=33.9
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
.+.++++.++.| ++|+||||+|||||++.|++...+..+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 567778888877 89999999999999999999876555544
No 351
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.45 E-value=4.4e-05 Score=78.84 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=40.8
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+...|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 333444445778888998887 8899999999999999999987766666544
No 352
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.44 E-value=4.4e-05 Score=78.34 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=39.0
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 44445678888888887 8899999999999999999988766666544
No 353
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.43 E-value=0.0003 Score=74.05 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=49.5
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~ 525 (804)
.|..+.||.|||||+.+|.+|..+|.+++.++|++.++. ..+.+++.-+... .+.+++||++.+...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhHH
Confidence 356789999999999999999999999999999986543 3355566555554 347899999887443
No 354
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.43 E-value=0.0003 Score=82.57 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=31.2
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
..+.+++++.+++| +++.||+|||||+|.|+|||--
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35667788888877 9999999999999999999954
No 355
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.43 E-value=0.00031 Score=87.47 Aligned_cols=131 Identities=27% Similarity=0.381 Sum_probs=88.6
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh--hhccc-----hhhH----HHHHHHHHhcCCceeehhHHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVG-----ASRV----RSLYQEAKDNAPSVVFIDELD 520 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~--~~g~~-----~~~l----~~lf~~a~~~~p~Il~IDEId 520 (804)
++++|-|.||+|||+|+.+||+..|...++|+.++-.+. .+|.. .+.+ ..++. +.+.. .-+++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~-amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLH-AMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHH-HhhcC-CEEEeehhh
Confidence 569999999999999999999999999999999875543 12211 1111 12333 33333 368899986
Q ss_pred HhhhhcCCCCCCCcchhHHHHHHHHHhhhc------------ccCCCceEEEeecCCCC------CCCccccCCCccccc
Q 003669 521 AVGRERGLIKGSGGQERDATLNQLLVCLDG------------FEGRGNVITIASTNRPD------ILDPALVRPGRFDRK 582 (804)
Q Consensus 521 ~l~~~r~~~~~sgge~~~~~l~~LL~~ld~------------~~~~~~viVIatTN~~~------~LdpaLlrpgRfd~~ 582 (804)
-.... ++.-|-.++|. +.-+.|+.|++|-|+-+ .||..+++ ||- +
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 54322 55555555553 23357888889888653 78889998 887 6
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 003669 583 IFIPKPGLIGRMEILKVHA 601 (804)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l 601 (804)
|++..++.++...|.....
T Consensus 1685 V~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred EEecccccchHHHHHHhhC
Confidence 6777777666666665444
No 356
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.42 E-value=0.00022 Score=83.92 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=42.8
Q ss_pred HHHHHHhccc-cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 430 LEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 430 l~~lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++++...|.+ ...++++++.+++| ++|+||+|+|||||++.|++...+.-+.+..
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3444444533 34688999999988 9999999999999999999988777666543
No 357
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.42 E-value=4.4e-05 Score=78.44 Aligned_cols=45 Identities=36% Similarity=0.363 Sum_probs=37.5
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.+..| +.|+||||+|||||+++|++...+..+.+..
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 44678888888877 8899999999999999999988776666543
No 358
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=3.9e-05 Score=79.29 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=39.0
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 44445678888998887 8899999999999999999988766666543
No 359
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00013 Score=81.63 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=31.7
Q ss_pred ccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 445 ~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
++++.+..| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~ 56 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV 56 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 567777766 899999999999999999998766555443
No 360
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=3.1e-05 Score=81.35 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=39.4
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33445678888999888 8899999999999999999988776666654
No 361
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00049 Score=78.84 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=68.0
Q ss_pred HHHHHhcccc-ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc-cceeeeccchhhhh----------hhccch
Q 003669 431 EEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG-VNFFSISASQFVEI----------YVGVGA 496 (804)
Q Consensus 431 ~~lv~~l~~~-~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~-~~~~~i~~s~~~~~----------~~g~~~ 496 (804)
+++...+... ..++.+++.+|+| +.++|+||+||||++|+|.+... .--+.|++-++-+. |+.|..
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 3343444443 3788999999998 99999999999999999998664 12344454443332 232322
Q ss_pred hhH-HHHHHHHHhcCCceeehhHHHHhhhhcC-------------------CCCCCCcchhHHHHHHHH
Q 003669 497 SRV-RSLYQEAKDNAPSVVFIDELDAVGRERG-------------------LIKGSGGQERDATLNQLL 545 (804)
Q Consensus 497 ~~l-~~lf~~a~~~~p~Il~IDEId~l~~~r~-------------------~~~~sgge~~~~~l~~LL 545 (804)
.-+ .+++.++.-..|+ .-.+|+-..+...+ +-.-|||++++..+...+
T Consensus 435 ~LFndTIl~NI~YGn~s-as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPS-ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred cccchhHHHHhhcCCCC-cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 211 3455555555554 23344433322110 011289999988877665
No 362
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00026 Score=72.60 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=39.0
Q ss_pred HHHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhh
Q 003669 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 428 ~~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~ 473 (804)
...+++..+|.+...+.+.++.+|.+ ..|.||+|||||||+|++-.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 34456666788888889999999987 88999999999999999975
No 363
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00014 Score=78.32 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 430 l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..++...+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 356777777777889999999988 8899999999999999999988766665543
No 364
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.39 E-value=0.00024 Score=84.54 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=38.7
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...++++++.+++| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 44788999999988 9999999999999999999988776665543
No 365
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.39 E-value=4.6e-05 Score=78.57 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.3
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.++.| +.|+||||+|||||+++|++...+.-+.+..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34678888888877 8899999999999999999987766665543
No 366
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.38 E-value=0.0002 Score=77.29 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=71.4
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccc---eeeeccchhhhhhhccchhhHHHHHH----HHH-------hcCCceeehh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIYVGVGASRVRSLYQ----EAK-------DNAPSVVFID 517 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~---~~~i~~s~~~~~~~g~~~~~l~~lf~----~a~-------~~~p~Il~ID 517 (804)
..++|+||+|||||.+++.....+... ...+.++..... ..+..+.+ ..+ .....|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts------~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS------NQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH------HHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH------HHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 348999999999999998877655432 233444432221 00110100 000 1123589999
Q ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHhhh--cccCC--------CceEEEeecCCCC---CCCccccCCCccccccc
Q 003669 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLD--GFEGR--------GNVITIASTNRPD---ILDPALVRPGRFDRKIF 584 (804)
Q Consensus 518 EId~l~~~r~~~~~sgge~~~~~l~~LL~~ld--~~~~~--------~~viVIatTN~~~---~LdpaLlrpgRfd~~I~ 584 (804)
|+.--..+. -|... .+.-|-+.++ ++.+. .++.+|++.|... .+++.|+| .|. ++.
T Consensus 108 DlN~p~~d~-----ygtq~---~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~ 176 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQP---PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILN 176 (272)
T ss_dssp TTT-S---T-----TS--H---HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE
T ss_pred ccCCCCCCC-----CCCcC---HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEE
Confidence 986544332 11122 2322222233 22222 3578888887543 46777777 555 788
Q ss_pred CCCCCHHHHHHHHHHHHcc
Q 003669 585 IPKPGLIGRMEILKVHARK 603 (804)
Q Consensus 585 ~~~Pd~~eR~~Il~~~l~~ 603 (804)
++.|+.+....|+...+..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999988877653
No 367
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.37 E-value=0.00015 Score=66.89 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=21.5
Q ss_pred EEEECCCCCChhHHHHHHhhhhccc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~ 478 (804)
|.|+||+|+|||+|++.|+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876543
No 368
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.37 E-value=0.00023 Score=86.50 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=42.4
Q ss_pred HHHHHHhcc--ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 430 LEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 430 l~~lv~~l~--~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
++++...|. ++..++++++++++| +.++|++|+|||||++.|+|...+..+.|.
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 344444453 245788999999988 999999999999999999998877666553
No 369
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=6.2e-05 Score=78.87 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=37.4
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+.-+++..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 5678888998887 8899999999999999999988766666544
No 370
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.37 E-value=6.1e-05 Score=78.72 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++...+.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 66 (225)
T PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 (225)
T ss_pred ccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 3333344445778889999888 8899999999999999999987666665543
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00036 Score=68.59 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.1
Q ss_pred cEEEECCCCCChhHHHHHHhhhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el 475 (804)
.++++|+||+||||++.-|+..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 48999999999999999999866
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.00067 Score=76.35 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=49.1
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh------hhcc--------chhhHHHHHHHHHhcCCceeeh
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------YVGV--------GASRVRSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~------~~g~--------~~~~l~~lf~~a~~~~p~Il~I 516 (804)
++|.|+||+|||||+..++... +...++++..+.... -+|. ....+..+.+.+....|.+++|
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 8899999999999999998755 345666665442221 1111 1223456677777778999999
Q ss_pred hHHHHhhh
Q 003669 517 DELDAVGR 524 (804)
Q Consensus 517 DEId~l~~ 524 (804)
|+|..+..
T Consensus 165 DSIq~l~~ 172 (372)
T cd01121 165 DSIQTVYS 172 (372)
T ss_pred cchHHhhc
Confidence 99988854
No 373
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.36 E-value=0.00021 Score=85.20 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=38.8
Q ss_pred cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 438 ~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
.+...++++++.+++| ++|+||+|+|||||++.|++.. +.-+.|..+
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~ 409 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKIN 409 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEEC
Confidence 3445788899999988 9999999999999999999988 666665433
No 374
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.36 E-value=6.9e-05 Score=78.99 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=37.8
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 345678888998888 8899999999999999999987666555543
No 375
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.35 E-value=0.00038 Score=74.84 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=76.1
Q ss_pred EEEECCCCCChhHHHHHHhhh--hccce---eeeccchhhh------h---hhccc---------hhhHHHHHHHHHhcC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGE--AGVNF---FSISASQFVE------I---YVGVG---------ASRVRSLYQEAKDNA 510 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~e--l~~~~---~~i~~s~~~~------~---~~g~~---------~~~l~~lf~~a~~~~ 510 (804)
++|+|++|+|||+||+.++.. ....| +.++.+.... . .++.. .......+.......
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence 899999999999999999987 33322 2233222111 0 11111 111222233333445
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCH
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~ 590 (804)
+++++||+++... .+..+...+... ..+.-||.||...... ...- .-+..+.+...+.
T Consensus 102 ~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 102 RCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVA-GSLG---GTDKVIELEPLSE 159 (287)
T ss_dssp SEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGG-TTHH---SCEEEEECSS--H
T ss_pred cceeeeeeecccc----------------cccccccccccc--cccccccccccccccc-cccc---ccccccccccccc
Confidence 8899999886542 223333222211 2244556666543221 1111 1145788999999
Q ss_pred HHHHHHHHHHHccCC----CCChhcHHHHHhhCCCCc
Q 003669 591 IGRMEILKVHARKKP----MADDVDYLAVASMTDGMV 623 (804)
Q Consensus 591 ~eR~~Il~~~l~~~~----l~~~~dl~~la~~t~G~s 623 (804)
++-.++|........ .........++..+.|..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 999999998876543 111223567888887644
No 376
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.34 E-value=0.00042 Score=75.86 Aligned_cols=138 Identities=22% Similarity=0.309 Sum_probs=77.9
Q ss_pred cccCCcEEEECCCCCChhHHHHHHhhhhccce-eeeccchhhhh-------hhccchhhHHHHHHHHHhcCCceeehhHH
Q 003669 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-FSISASQFVEI-------YVGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (804)
Q Consensus 448 l~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~-~~i~~s~~~~~-------~~g~~~~~l~~lf~~a~~~~p~Il~IDEI 519 (804)
-.+++|+.|+|+-|+|||.|+-..-..+...- .++....|+.. ..|+. .-+..+-... .....+++|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeee
Confidence 34678999999999999999999988775433 44444444432 12222 1111111111 223459999997
Q ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHH
Q 003669 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 599 (804)
Q Consensus 520 d~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~ 599 (804)
+---.. .-.++..|+..|= ..+|++++|+|.+ |.-+-++++.+.-.+| -.++++.
T Consensus 140 ~VtDI~-----------DAMiL~rL~~~Lf----~~GV~lvaTSN~~----P~~LY~dGlqR~~FLP------~I~li~~ 194 (367)
T COG1485 140 EVTDIA-----------DAMILGRLLEALF----ARGVVLVATSNTA----PDNLYKDGLQRERFLP------AIDLIKS 194 (367)
T ss_pred eecChH-----------HHHHHHHHHHHHH----HCCcEEEEeCCCC----hHHhcccchhHHhhHH------HHHHHHH
Confidence 531100 1125666665553 3488999999853 2222233444333333 3467777
Q ss_pred HHccCCCCChhcH
Q 003669 600 HARKKPMADDVDY 612 (804)
Q Consensus 600 ~l~~~~l~~~~dl 612 (804)
++.-..++...|+
T Consensus 195 ~~~v~~vD~~~DY 207 (367)
T COG1485 195 HFEVVNVDGPVDY 207 (367)
T ss_pred heEEEEecCCccc
Confidence 7766666655554
No 377
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.34 E-value=0.0003 Score=75.77 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=56.6
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeecc-----------chhhhh--hhccc-----------hhhHHHHHHHHH
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA-----------SQFVEI--YVGVG-----------ASRVRSLYQEAK 507 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~-----------s~~~~~--~~g~~-----------~~~l~~lf~~a~ 507 (804)
.+++|+||||+|||||++++++.+....+.+.. .++... ++.+. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 468999999999999999999987654332211 121111 11110 011234566677
Q ss_pred hcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCC
Q 003669 508 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (804)
Q Consensus 508 ~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~ 566 (804)
.+.|.++++||+.. ...+..++..+. .+..+|++|+..
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechh
Confidence 78999999999521 113444444442 356788888754
No 378
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.34 E-value=4.4e-05 Score=79.23 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.5
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|++...+.-+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 33445678888888887 8899999999999999999987766665543
No 379
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00015 Score=75.34 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=43.4
Q ss_pred HHHHHhc-cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 431 EEIVKFF-THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 431 ~~lv~~l-~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+++.+.| .....+.+.++.++.| +.|+||+|+|||||+|+|.+..++..+++-.
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~ 63 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEe
Confidence 4455556 5667788899999998 9999999999999999999977666665543
No 380
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.33 E-value=6.8e-05 Score=78.66 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=38.8
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 44445678888888887 8899999999999999999987766666543
No 381
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.00055 Score=74.80 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=85.8
Q ss_pred ccCCcEEEECCCCCChhHHHHHHhhhhcc-------------ceeeeccchhhhhhhccchhhHHHHHHHHHh-----cC
Q 003669 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------NFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NA 510 (804)
Q Consensus 449 ~i~~gvLL~Gp~GtGKTtLakaLA~el~~-------------~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~-----~~ 510 (804)
+++...+|+|+.|.||+++++.++..+-. .+..++... . .-....++.+.+.+.. ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCC
Confidence 34556899999999999999999987611 111121000 0 0111344555554432 24
Q ss_pred CceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCH
Q 003669 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (804)
Q Consensus 511 p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~ 590 (804)
.-|++||++|.+... ..+.|+..+++ ...++++|..|+.++.+-|.++++|+ ++.|.+|+.
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc~---~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRCQ---VFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCeE---EEECCCCCH
Confidence 458999998877543 67899999994 56677888777778899999988553 789999988
Q ss_pred HHHHHHHHH
Q 003669 591 IGRMEILKV 599 (804)
Q Consensus 591 ~eR~~Il~~ 599 (804)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887766654
No 382
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.33 E-value=0.00035 Score=85.22 Aligned_cols=55 Identities=25% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHHHhccc--cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 430 LEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 430 l~~lv~~l~~--~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++++...|.. +..++++++.+++| +.++||+|+|||||++.|+|...+.-+.+..
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3444444542 45788899999988 9999999999999999999988776665543
No 383
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=5.7e-05 Score=79.59 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=39.1
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++++..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 44445678888998887 8899999999999999999987766666544
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.32 E-value=0.00016 Score=73.52 Aligned_cols=68 Identities=26% Similarity=0.378 Sum_probs=44.2
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhh------hh----------ccchhhHHHHHHHHHhcCCceeeh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------YV----------GVGASRVRSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~------~~----------g~~~~~l~~lf~~a~~~~p~Il~I 516 (804)
.++|+||+|+|||||+++|++........+...+..+. .. +.....+..++..+.+..|+++++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 38999999999999999999977543333322221111 00 001123455666777788999999
Q ss_pred hHHH
Q 003669 517 DELD 520 (804)
Q Consensus 517 DEId 520 (804)
.|+.
T Consensus 107 gEir 110 (186)
T cd01130 107 GEVR 110 (186)
T ss_pred EccC
Confidence 9984
No 385
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.32 E-value=0.00015 Score=73.50 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=37.1
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...++++++.+..| +.|+||||+|||||+++|++...+..+.+..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 34677888888887 8899999999999999999987766665543
No 386
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.31 E-value=7.1e-05 Score=77.97 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=37.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..++++++.++.| ++|+||||+|||||++.|++...+..+++..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4678888999888 9999999999999999999988776666544
No 387
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00017 Score=67.20 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=26.0
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
|+|.||||+||||+++.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999887765443
No 388
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.30 E-value=7e-05 Score=77.39 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=37.3
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34678888888887 8899999999999999999987666666543
No 389
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.29 E-value=0.0018 Score=83.29 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=92.1
Q ss_pred ccccCccCchhHHHHHHHHHHhccccccccccCcccCCcEEEECCCCCChhHHHHHHhhhhccce---eeeccc---hhh
Q 003669 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF---FSISAS---QFV 488 (804)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~l~~~~~~~~~gl~i~~gvLL~Gp~GtGKTtLakaLA~el~~~~---~~i~~s---~~~ 488 (804)
..+++..|.+..+..+..++.. +....+-+.|+|++|+||||||+++++.+...| +.++.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 4567788888777666655421 111123388999999999999999988764332 111110 000
Q ss_pred hhh----------------------hccc---hhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHH
Q 003669 489 EIY----------------------VGVG---ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (804)
Q Consensus 489 ~~~----------------------~g~~---~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~ 543 (804)
..+ .+.. ...+. .........+.++++|+++... .+..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~-~~~~~L~~krvLLVLDdv~~~~----------------~l~~ 313 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG-AMEERLKHRKVLIFIDDLDDQD----------------VLDA 313 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH-HHHHHHhCCeEEEEEeCCCCHH----------------HHHH
Confidence 000 0000 00001 1111223345578888875321 3344
Q ss_pred HHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHHHHHHHHccCCCCCh-h--cHHHHHhhCC
Q 003669 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-V--DYLAVASMTD 620 (804)
Q Consensus 544 LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~Il~~~l~~~~l~~~-~--dl~~la~~t~ 620 (804)
+....+.+ . .+..||.||+... +++....++++.++.|+.++-.++|..++-.....++ . -...++..+.
T Consensus 314 L~~~~~~~-~-~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 314 LAGQTQWF-G-SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred HHhhCccC-C-CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 43323322 2 2334555666433 2222346678999999999999999988754332221 0 1234556666
Q ss_pred CCc
Q 003669 621 GMV 623 (804)
Q Consensus 621 G~s 623 (804)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 655
No 390
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.29 E-value=0.0013 Score=66.04 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=24.2
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 485 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s 485 (804)
+++.||||+|||+|+..++... +.+..+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998776533 5566666543
No 391
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00016 Score=74.45 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33345678888888887 8899999999999999999987766666654
No 392
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=7.7e-05 Score=78.61 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=39.6
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+.....+.++++.++.| ++|+||||+|||||+++|+|...+..+++..
T Consensus 12 ~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred EeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 344445778888998887 8999999999999999999988766666554
No 393
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.29 E-value=7.2e-05 Score=77.63 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=37.6
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...++++++.+..| ++|+||||+|||||+++|++...+..+.+..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34678888888887 8899999999999999999987766666543
No 394
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.28 E-value=5.4e-05 Score=79.19 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=38.4
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33445678888888877 8899999999999999999987766665543
No 395
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=5.2e-05 Score=78.63 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
+++...+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 34434444455778888999887 88999999999999999999877666665443
No 396
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.28 E-value=0.00013 Score=69.70 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=32.7
Q ss_pred cccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 444 ~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+++++.++.| ++|+|+||+|||||+++|++...+..+.+.
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~ 43 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSIL 43 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEE
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccc
Confidence 4556667766 899999999999999999998877666653
No 397
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=7.7e-05 Score=78.44 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=36.9
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
...+.++++.+..| ++|+||||+|||||+++|++...+..+.+.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 59 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 45678888998888 889999999999999999998766555554
No 398
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.27 E-value=5.7e-05 Score=78.81 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=38.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh-----ccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el-----~~~~~~i~~ 484 (804)
+.....+.++++.+..| +.|+||||+|||||+++|+|.. .+.-+++..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 33345678888888887 8899999999999999999987 565565543
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00043 Score=78.70 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhh
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~ 473 (804)
++..+|+...++.+..+.+.+| ..|+|+||+|||||+|+|+.
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3444567777788888888776 99999999999999999998
No 400
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.25 E-value=0.0002 Score=73.89 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=38.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 33344677888888877 8899999999999999999987766665543
No 401
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00031 Score=81.67 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=35.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~ 82 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3578888888888 889999999999999999998765555443
No 402
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.25 E-value=9.3e-05 Score=78.41 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.|.+...+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 344445678888998887 8899999999999999999987666665543
No 403
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00019 Score=77.81 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.2
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~ 478 (804)
..+.++++.++.| +.|+||||+|||||+++|+|.+.+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 3678888898888 8999999999999999999987554
No 404
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.24 E-value=0.0002 Score=74.93 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=39.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 33445678888888887 99999999999999999999887766666543
No 405
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.24 E-value=0.001 Score=76.73 Aligned_cols=72 Identities=22% Similarity=0.461 Sum_probs=50.8
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhhh------hcc--------chhhHHHHHHHHHhcCCceeeh
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY------VGV--------GASRVRSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~~------~g~--------~~~~l~~lf~~a~~~~p~Il~I 516 (804)
++|.|+||+|||||+..++... +...++++..+..... +|. ....+..+++.+....|.+++|
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 8899999999999999998755 4566777765533321 111 1123456667777778999999
Q ss_pred hHHHHhhhh
Q 003669 517 DELDAVGRE 525 (804)
Q Consensus 517 DEId~l~~~ 525 (804)
|.+..+...
T Consensus 163 DSIq~l~~~ 171 (446)
T PRK11823 163 DSIQTMYSP 171 (446)
T ss_pred echhhhccc
Confidence 999887543
No 406
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.24 E-value=0.00027 Score=84.13 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=36.8
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..++++++.+++| ++|+||+|+|||||++.|+|...+..+.+.
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 4678889999888 999999999999999999998877666553
No 407
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.22 E-value=9e-05 Score=78.69 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=39.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.+.
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe
Confidence 33334577888888877 89999999999999999999887766666543
No 408
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.22 E-value=0.00051 Score=81.57 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=37.6
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
..++++++.+++| ++++|++|+|||||++.|+|...+.-+.+...
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 4678889999877 99999999999999999999887766655433
No 409
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.22 E-value=0.0068 Score=74.44 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.4
Q ss_pred cEEEECCCCCChhHHHHHHhhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGE 474 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~e 474 (804)
.++|+||||+|||||+|.+++.
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHH
Confidence 4899999999999999999886
No 410
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.22 E-value=7.9e-05 Score=78.48 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=38.1
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh--ccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el--~~~~~~i~~ 484 (804)
.|.+...+.++++.++.| ++|+||||+|||||+++|+|.. .+..+.+..
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 344445678889999888 8899999999999999999974 344555543
No 411
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.00036 Score=71.63 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=41.3
Q ss_pred EEEECCCCCChhHHHHHHhhhhccc----eeeecc-chhhhh----h-----hccchhhHHHHHHHHHhcCCceeehhHH
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVN----FFSISA-SQFVEI----Y-----VGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~----~~~i~~-s~~~~~----~-----~g~~~~~l~~lf~~a~~~~p~Il~IDEI 519 (804)
++|+||+|+||||+++++++.+..+ .+.+.- .++... + ++.....+...+..+....|+++++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8899999999999999998877432 121111 111100 1 1222223445556666778999999997
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.21 E-value=0.00079 Score=69.11 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.0
Q ss_pred cCcccCCc---EEEECCCCCChhHHHHHHh
Q 003669 446 RGVRIPGG---ILLCGPPGVGKTLLAKAVA 472 (804)
Q Consensus 446 ~gl~i~~g---vLL~Gp~GtGKTtLakaLA 472 (804)
.++.+..+ ++|+||||+|||||++.|+
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 44444443 8999999999999999998
No 413
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.20 E-value=0.00059 Score=83.08 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHhccc--cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 431 EEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 431 ~~lv~~l~~--~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+++...|.. ...++++++.+++| +.++||+|+|||||++.|++...+..+.+..
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 444444432 34688899999988 9999999999999999999988776665543
No 414
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=5.3e-05 Score=80.47 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=41.8
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
++...+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred eEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 3333344445778888888877 88999999999999999999887766666543
No 415
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00023 Score=75.99 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=37.8
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+...+.++++.++.| ++|+||||+|||||+++|+|...+..+++..
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 344678888898888 8899999999999999999987766665543
No 416
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.00048 Score=68.91 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.7
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.|+++||||+|||||++.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 37999999999999999999999988877763
No 417
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.19 E-value=9.7e-05 Score=79.41 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=39.6
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.|.+...+.++++.++.| ++|+||||+|||||+++|++...+..+.+..
T Consensus 16 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 344445678889999888 8899999999999999999988766665543
No 418
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.19 E-value=9.3e-05 Score=81.01 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 434 VKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 434 v~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33444455778889999888 8999999999999999999988776666543
No 419
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.19 E-value=0.0001 Score=77.64 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=39.7
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
.+.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 11 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 11 SFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 344445678888888887 88999999999999999999887666655543
No 420
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.18 E-value=0.00025 Score=73.48 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3678888888887 8899999999999999999988776666654
No 421
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0081 Score=68.41 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=67.6
Q ss_pred cEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHhhhhcCCCCCC
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 532 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l~~~r~~~~~s 532 (804)
-++++||.+|||||+++.+........+.++..+........ ......+..+.......+|||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 489999999999999999988775556666655543322111 1111222222222335899999987622
Q ss_pred CcchhHHHHHHHHHhhhcccCCCceEEEeecCCCCCCCccccCCCcccccccCCCCCHHHHHH
Q 003669 533 GGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 595 (804)
Q Consensus 533 gge~~~~~l~~LL~~ld~~~~~~~viVIatTN~~~~LdpaLlrpgRfd~~I~~~~Pd~~eR~~ 595 (804)
....+..+. |.... ++++.+++...-....+-.-+||. ..+.+.|.+..+...
T Consensus 109 ----W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ----WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ----HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 112333333 21111 344444443222222222236784 477788888888865
No 422
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00027 Score=74.50 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.0
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.....+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33345678888888877 8999999999999999999987766666654
No 423
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.17 E-value=0.00027 Score=72.71 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||++.|+|...+..+.+..
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 33445678888888877 8899999999999999999987766666654
No 424
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.17 E-value=0.00011 Score=78.16 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=38.8
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||++.|++...+..+++..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33345678888888887 8899999999999999999988776666554
No 425
>PRK10908 cell division protein FtsE; Provisional
Probab=97.17 E-value=0.00011 Score=76.33 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=37.4
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.+..| ++|+||||+|||||+++|++...+..+++..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34677888888877 8899999999999999999988776666654
No 426
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.16 E-value=7.6e-05 Score=79.54 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++...+.+...+.++++.+..| +.|+||||+|||||+++|++...+..+++..
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (257)
T PRK10619 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV 64 (257)
T ss_pred eeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3333444445778889998888 8899999999999999999987766666544
No 427
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.16 E-value=0.00011 Score=78.30 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.|.+...+.++++.+..| ++|.||||+|||||++.|++...+..+.+..
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred EcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 343445678888888887 9999999999999999999988776666543
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.16 E-value=0.00049 Score=70.76 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEECCCCCChhHHHHHHhh
Q 003669 454 ILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~ 473 (804)
++|+||||+|||||++.|++
T Consensus 32 ~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 32 LLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEECCCCCccHHHHHHHHH
Confidence 89999999999999999994
No 429
>PRK13409 putative ATPase RIL; Provisional
Probab=97.15 E-value=0.00032 Score=83.67 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=33.7
Q ss_pred ccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 443 ~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+...++.+..| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~ 397 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD 397 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 56667777777 889999999999999999998766655554
No 430
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.15 E-value=0.00029 Score=72.16 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=39.1
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 33445778888998887 8999999999999999999987766665544
No 431
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.15 E-value=0.00071 Score=82.61 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHhcc-ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 431 ~~lv~~l~-~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+++...|. ++..++++++.+++| +.|+||+|+|||||++.|++...+.-+.|..
T Consensus 477 ~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred EEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 44444443 345788899999888 9999999999999999999988776665543
No 432
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.14 E-value=0.00073 Score=82.56 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHhccc---cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 430 LEEIVKFFTH---GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 430 l~~lv~~l~~---~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
++++...|.+ ...++++++.+++| ++|+||+|+|||||++.|++...+.-+.|.
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 4444444532 34788999999988 999999999999999999998877666553
No 433
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.14 E-value=0.00029 Score=72.94 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=36.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|++...+..+.+..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 4678888888887 8899999999999999999987666555543
No 434
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.14 E-value=0.0016 Score=71.63 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=62.3
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh----hhc------------cchhhHHHHHHHHHhcCCcee
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVG------------VGASRVRSLYQEAKDNAPSVV 514 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~----~~g------------~~~~~l~~lf~~a~~~~p~Il 514 (804)
+.|+||||+|||+|+-.++... +...++++..+..+. ..| ..+..+..+...++...++++
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lI 137 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDII 137 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEE
Confidence 8899999999999987765533 455666665443321 001 011112222233445678899
Q ss_pred ehhHHHHhhhhcCCCCCCCcc---hhHHHHHHHHHhhhcccCCCceEEEeecC
Q 003669 515 FIDELDAVGRERGLIKGSGGQ---ERDATLNQLLVCLDGFEGRGNVITIASTN 564 (804)
Q Consensus 515 ~IDEId~l~~~r~~~~~sgge---~~~~~l~~LL~~ld~~~~~~~viVIatTN 564 (804)
+||-+-.+.+........++. .....+..++..|.......++.+|.+..
T Consensus 138 VIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 138 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999998876532211111111 12234455566566555567777777743
No 435
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.0003 Score=72.56 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.1
Q ss_pred cccccccCcccCCc-EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g-vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.+..| ++|+||||+|||||+++|++.+.+.-+++..
T Consensus 13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 34667777877766 7799999999999999999987766666544
No 436
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.00029 Score=74.36 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=37.8
Q ss_pred ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 439 ~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
....+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 344678888888877 8899999999999999999987766666544
No 437
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0002 Score=77.13 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=34.0
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
..+++.++.++.| +.++|.+|.|||||+|++-+--.+..+.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 4667889999988 88999999999999999987554544443
No 438
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.13 E-value=0.0019 Score=73.07 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=37.0
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhcc-ceeeeccchhhhhhhccchhhHHHHHHHHHhcCCceeehhHHHHh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~-~~~~i~~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~IDEId~l 522 (804)
.+++++||+|||||+++.+|+...-. .-+.++...++..... ..+.. -..+++++|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCC
Confidence 34899999999999999998776211 1133444333322110 11111 234679999998664
No 439
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.035 Score=62.37 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=26.2
Q ss_pred cEEEECCCCCChhHHHHHHhhhh---ccceeeeccch
Q 003669 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ 486 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~ 486 (804)
-++|+||+|+||||++..||..+ +..+..+++..
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 38999999999999999998755 44455555544
No 440
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.13 E-value=0.00029 Score=73.09 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.1
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4677888888877 8899999999999999999988776666644
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.13 E-value=0.00077 Score=74.08 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=45.7
Q ss_pred CcEEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhh----------h-----ccchhhHHHHHHHHHhcCCceeeh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY----------V-----GVGASRVRSLYQEAKDNAPSVVFI 516 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~----------~-----g~~~~~l~~lf~~a~~~~p~Il~I 516 (804)
..++++||+|+|||||+++|++.+......+...+..+.. . +...-.+..++..+.+..|+++++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 4599999999999999999998775433322222211110 0 011123456777778889999999
Q ss_pred hHHH
Q 003669 517 DELD 520 (804)
Q Consensus 517 DEId 520 (804)
||+.
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9985
No 442
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.12 E-value=0.0003 Score=72.55 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4677888888877 8899999999999999999987766666543
No 443
>PRK07261 topology modulation protein; Provisional
Probab=97.12 E-value=0.00064 Score=68.23 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.6
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++++|+||+|||||++.|+..++.+.+.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999998888776654
No 444
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.12 E-value=9.7e-05 Score=79.69 Aligned_cols=42 Identities=36% Similarity=0.482 Sum_probs=35.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~ 478 (804)
+.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+.
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 44445778888888887 8899999999999999999987554
No 445
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.12 E-value=0.00033 Score=71.63 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=37.9
Q ss_pred cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 438 ~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.....+.++++.+..| ++|+||||+|||||++.|+|...+.-+.+..
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 3445678888888887 8899999999999999999987666555543
No 446
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00032 Score=75.48 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|.+.+.-+++..
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 33345678888888887 8899999999999999999988766665543
No 447
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.10 E-value=0.00034 Score=73.65 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=38.6
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.+...+.++++.+..| +.|+||||+|||||+++|+|...+.-+++..
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33445678888888877 8899999999999999999987766666544
No 448
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.10 E-value=0.0072 Score=65.02 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=57.4
Q ss_pred EEEECCCCCChhHHHHHHhhhhccceeeeccchhhhhhhcc------------chhhHHHHHHHHHhcCCceeehhHHHH
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV------------GASRVRSLYQEAKDNAPSVVFIDELDA 521 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~~~~~g~------------~~~~l~~lf~~a~~~~p~Il~IDEId~ 521 (804)
+-|+|++||||++.++.||+.+-..- -.|.++..|++. ..+-...+-+.+....-+++++||.|+
T Consensus 113 LSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DK 189 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDK 189 (344)
T ss_pred EEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhh
Confidence 66999999999999999998762211 122333333221 111113344555566677999999999
Q ss_pred hhhhcCCCCCCCcchhHHHHHHHHHhhhcc-----cCCCceEEEeecCCC
Q 003669 522 VGRERGLIKGSGGQERDATLNQLLVCLDGF-----EGRGNVITIASTNRP 566 (804)
Q Consensus 522 l~~~r~~~~~sgge~~~~~l~~LL~~ld~~-----~~~~~viVIatTN~~ 566 (804)
+.+. .+..+--.+|.. .+..+.++|.-+|.-
T Consensus 190 mp~g--------------Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 190 LPPG--------------LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred cCHh--------------HHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 8664 444444444421 233456777666654
No 449
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00034 Score=73.43 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.4
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 68 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4678888888887 8899999999999999999988776666654
No 450
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.09 E-value=0.00011 Score=78.24 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=38.9
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.+...++++++.+..| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 44445778888888877 8899999999999999999987766665543
No 451
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00036 Score=73.65 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=37.0
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
...+.++++.+..| +.|+||||+|||||+++|+|...+.-+++..
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34678888888877 8899999999999999999987766665543
No 452
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.08 E-value=0.0013 Score=68.68 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCcEEEECCCCCChhHHHHHHhhhhccceeeeccchhh-h--h---h----hccchhhHHHHHHHHH--hcCCceeehhH
Q 003669 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-E--I---Y----VGVGASRVRSLYQEAK--DNAPSVVFIDE 518 (804)
Q Consensus 451 ~~gvLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s~~~-~--~---~----~g~~~~~l~~lf~~a~--~~~p~Il~IDE 518 (804)
|.-++|+|+||+||||+++.+++. .-++..+.+... . . . .......+.+.+..+. ...+..|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 444999999999999999999752 222222222100 0 0 0 0001112223333332 24478999999
Q ss_pred HHHhhh
Q 003669 519 LDAVGR 524 (804)
Q Consensus 519 Id~l~~ 524 (804)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998744
No 453
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00015 Score=76.34 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=38.4
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.....+.++++.+..| ++|+||||+|||||+++|++...+.-+.+..
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 33445678888888877 8899999999999999999987666665543
No 454
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00014 Score=77.36 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=39.0
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.|.+...++++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 344455778888888877 8899999999999999999987666555543
No 455
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00036 Score=74.56 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.....++++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 33445678888888887 8899999999999999999987666665544
No 456
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.07 E-value=0.00037 Score=72.73 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=36.6
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 678888888877 9999999999999999999987766666543
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.00054 Score=71.79 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=24.3
Q ss_pred ccccCcccCCc--EEEECCCCCChhHHHHHHhh
Q 003669 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 443 ~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~ 473 (804)
..++.+.+..| ++|.||||+||||+++.+++
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455554443 88999999999999999988
No 458
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00015 Score=77.69 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 431 ~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+++...+.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 69 (265)
T PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 (265)
T ss_pred eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence 34444444445778888998887 889999999999999999998766555554
No 459
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.06 E-value=0.0008 Score=80.33 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=40.4
Q ss_pred HHHHHhccc-cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 431 EEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 431 ~~lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
+++...|.+ ...++++++.+++| ++++|++|+|||||++.|+|...+.-+.+
T Consensus 338 ~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 338 DDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred EEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 344334432 34688899999888 99999999999999999999887665544
No 460
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.05 E-value=0.0017 Score=68.31 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=24.7
Q ss_pred cCCc--EEEECCCCCChhHHH-HHHhhhh--ccceeeeccc
Q 003669 450 IPGG--ILLCGPPGVGKTLLA-KAVAGEA--GVNFFSISAS 485 (804)
Q Consensus 450 i~~g--vLL~Gp~GtGKTtLa-kaLA~el--~~~~~~i~~s 485 (804)
+|.| +++.|+||||||||+ +.+++.+ +...++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4544 899999999999996 5555443 4455555543
No 461
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.05 E-value=0.00016 Score=75.27 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=37.9
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+.....+.++++.+..| ++|.||||+|||||+++|+|.+.+.-+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33345677888888777 8899999999999999999987666665543
No 462
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.05 E-value=0.001 Score=78.28 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..++++++.+++| ++++||+|+|||||++.|+|...+.-+.+.
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4688899999988 999999999999999999998876665553
No 463
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.04 E-value=0.00037 Score=72.37 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=34.2
Q ss_pred cccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeee
Q 003669 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (804)
Q Consensus 442 ~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i 482 (804)
.++++++.++.| +.|+||||+|||||++.|++...+..+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 356778888877 88999999999999999999876665555
No 464
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0019 Score=67.04 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=33.2
Q ss_pred cccc-ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 437 FTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 437 l~~~-~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
+.+. +.++.+++.+..| -.|.||||+|||||+.+|+|.-
T Consensus 13 v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 13 VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred ecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3443 6788899999988 7799999999999999999865
No 465
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.03 E-value=0.0018 Score=67.60 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=58.1
Q ss_pred EEEECCCCCChhHHHHHHhhhh---ccceeeeccchhhhh----hhcc---------------chhhHHHHHHHHH---h
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGV---------------GASRVRSLYQEAK---D 508 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el---~~~~~~i~~s~~~~~----~~g~---------------~~~~l~~lf~~a~---~ 508 (804)
++|+|+||+|||+|+..++... +...++++...+... ..+. .......+++.+. .
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 105 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLAK 105 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999998643 556667766521110 0000 0001111122211 1
Q ss_pred cCCceeehhHHHHhhhhcCCCCCCCcchhHHHHHHHHHhhhcccCCCceEEEeecC
Q 003669 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (804)
Q Consensus 509 ~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVIatTN 564 (804)
..+++++||-+..+...... ...........+..++..|-.+....++.+|.+..
T Consensus 106 ~~~~lvVIDsi~al~~~~~~-~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELE-DEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred hcccEEEEeCcHHHhHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 57889999999887543110 11112222333444444444333445667776654
No 466
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00015 Score=87.36 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=42.4
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+...|.....+.++++.+..| ++|+||||+|||||+++|+|...+..|.|..
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 334456666889999999988 9999999999999999999987766666543
No 467
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00017 Score=76.50 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=34.5
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhcc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~ 477 (804)
|.....++++++.+.+| ++|+||||+|||||+++|+|...+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 43445678888998887 889999999999999999998754
No 468
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.03 E-value=0.00069 Score=68.76 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=18.1
Q ss_pred EEEECCCCCChhHHHHHHh
Q 003669 454 ILLCGPPGVGKTLLAKAVA 472 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA 472 (804)
++|+||||+||||++|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00041 Score=72.38 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=36.5
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|++...+.-+.+..
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 3677888888888 8899999999999999999987666555543
No 470
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.0002 Score=76.06 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
|.+...+.++++.+..| ++|+||||+|||||+++|+|..+
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33344678888888887 88999999999999999999753
No 471
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.0023 Score=66.29 Aligned_cols=68 Identities=25% Similarity=0.413 Sum_probs=43.5
Q ss_pred EEEECCCCCChhHHHHHHhhhh--------ccceeeeccch-hhhhhhcc-------------chhhHHHHHHHHHhcCC
Q 003669 454 ILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQ-FVEIYVGV-------------GASRVRSLYQEAKDNAP 511 (804)
Q Consensus 454 vLL~Gp~GtGKTtLakaLA~el--------~~~~~~i~~s~-~~~~~~g~-------------~~~~l~~lf~~a~~~~p 511 (804)
.++.||||||||||++-||.-+ +..++-++-+. ......|. ..-.-.-++..++.+.|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 7899999999999999999854 23344444222 11111110 01111346677889999
Q ss_pred ceeehhHHHH
Q 003669 512 SVVFIDELDA 521 (804)
Q Consensus 512 ~Il~IDEId~ 521 (804)
.|+++|||..
T Consensus 220 EViIvDEIGt 229 (308)
T COG3854 220 EVIIVDEIGT 229 (308)
T ss_pred cEEEEecccc
Confidence 9999999854
No 472
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.001 Score=69.26 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.7
Q ss_pred CcEEEECCCCCChhHHHHHHhh
Q 003669 452 GGILLCGPPGVGKTLLAKAVAG 473 (804)
Q Consensus 452 ~gvLL~Gp~GtGKTtLakaLA~ 473 (804)
+.++|+||||+|||||+|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4489999999999999999984
No 473
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00045 Score=74.08 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=39.1
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
|.+...++++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 44445678888998888 8999999999999999999988766665543
No 474
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00021 Score=75.70 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=33.9
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
+.+...++++++.++.| ++|+||||+|||||+++|+|...
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44445678888898887 88999999999999999999865
No 475
>PRK13409 putative ATPase RIL; Provisional
Probab=97.00 E-value=0.00051 Score=81.94 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHhccc-cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 433 IVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 433 lv~~l~~-~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
+...|+. ...+.++. .+..| +.|+||||+|||||++.|+|.+.+..+.+.
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 4445653 23566666 55566 789999999999999999999887777764
No 476
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00046 Score=78.41 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 429 ~l~~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
...++.+.+.....+.++++.++.| ++|+||||+|||||+++|++...+..+.|.
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~ 86 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence 3455666666666788899999988 889999999999999999998876666543
No 477
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.99 E-value=0.00083 Score=66.63 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred cEEEECCCCCChhHHHHHHhhh
Q 003669 453 GILLCGPPGVGKTLLAKAVAGE 474 (804)
Q Consensus 453 gvLL~Gp~GtGKTtLakaLA~e 474 (804)
..+++||||+|||+++++++-.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998653
No 478
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.99 E-value=0.00051 Score=72.71 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=33.6
Q ss_pred cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccc
Q 003669 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (804)
Q Consensus 440 ~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~ 478 (804)
...++++++.++.| +.|+||||+|||||+++|+|...+.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 34678888898888 8899999999999999999987654
No 479
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.99 E-value=0.0017 Score=77.38 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHHHHHHhccc--cccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 429 ~l~~lv~~l~~--~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
.++++...|.+ ...++++++.+++| ++|+||+|+|||||++.|++...+..+.+...
T Consensus 340 ~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 340 TLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred EEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 34444444533 34688899999988 99999999999999999999887766665443
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.98 E-value=0.00022 Score=85.91 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
++...|.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 8 ~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 8 GAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred eEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 3444455556788999999988 8999999999999999999987766666543
No 481
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.97 E-value=0.00051 Score=70.52 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=37.6
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|.||||+|||||++.|++...+..+.+..
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~ 64 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV 64 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEE
Confidence 4678888999888 8999999999999999999988776666654
No 482
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.97 E-value=0.0005 Score=72.12 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=33.0
Q ss_pred cccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 444 ~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3456677766 8999999999999999999988766665543
No 483
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00013 Score=77.83 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=36.0
Q ss_pred HHHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 432 ~lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
++...|.....+.++++.++.| +.|+||||+|||||++.|+|...
T Consensus 17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3333344445678888998887 88999999999999999999765
No 484
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00058 Score=71.65 Aligned_cols=47 Identities=28% Similarity=0.249 Sum_probs=38.5
Q ss_pred cccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 438 ~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
.+...++++++.+..| ++|+||||+|||||+++|++...+.-+.+..
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3345778888888887 9999999999999999999988766665543
No 485
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.96 E-value=0.00049 Score=71.38 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=36.2
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| +.|+||||+|||||+++|++...+.-+++..
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 3677888888877 8899999999999999999987665555543
No 486
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.96 E-value=0.0012 Score=78.56 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=36.7
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
..++++++.+++| ++++||+|+|||||++.|+|...+.-+.+.
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 4678888999888 999999999999999999998877655543
No 487
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00023 Score=75.43 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=33.6
Q ss_pred ccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 437 l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
+.+...+.++++.+..| +.|+||||+|||||+++|+|...
T Consensus 13 ~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 33445678888888887 88999999999999999999765
No 488
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00053 Score=71.80 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=36.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 4567788888877 8899999999999999999988766565543
No 489
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00097 Score=77.27 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHHHhcccc-ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeeccc
Q 003669 430 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (804)
Q Consensus 430 l~~lv~~l~~~-~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~s 485 (804)
++++...+.+. ....++++.+++| +.|+|++|+|||||+..|+|.+.+.-+++...
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vn 381 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEEC
Confidence 45666666554 6778899999988 99999999999999999999987776666554
No 490
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.95 E-value=0.00054 Score=71.77 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.8
Q ss_pred ccccCcccCCc--EEEECCCCCChhHHHHHHhhhhcc----ceeeec
Q 003669 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV----NFFSIS 483 (804)
Q Consensus 443 ~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~----~~~~i~ 483 (804)
++++++.+..| ++|+||||+|||||+++|+|...+ ..+.+.
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~ 48 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL 48 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE
Confidence 35667777776 889999999999999999998765 455543
No 491
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.95 E-value=0.00057 Score=73.25 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=37.4
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4678888998888 8899999999999999999988776666544
No 492
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.95 E-value=0.0016 Score=77.35 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=43.8
Q ss_pred HHHHHHHhcc-ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 429 ELEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 429 ~l~~lv~~l~-~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
+++++...|. +...++++++.+++| +.++||+|+||||+++.|.+...+..|.|-.
T Consensus 330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 330 EFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 3444445555 467889999999988 8899999999999999999988775555443
No 493
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00026 Score=76.25 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=34.4
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~ 476 (804)
.|.+...+.++++.+..| ++|+|+||+|||||+++|+|.+.
T Consensus 33 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 33 WYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344445678888998887 89999999999999999999765
No 494
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.94 E-value=0.00054 Score=71.10 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=36.3
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 63 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI 63 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 3577888888887 8899999999999999999987666555543
No 495
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00022 Score=76.50 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=35.0
Q ss_pred hccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhcc
Q 003669 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (804)
Q Consensus 436 ~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~ 477 (804)
.|.+...+.++++.+..| ++|+||||+|||||+++|+|...+
T Consensus 28 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 28 FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred EECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 344445678889999887 889999999999999999998753
No 496
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.94 E-value=0.0025 Score=70.98 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=40.3
Q ss_pred cCccCchhHHHHHHHHHHhcc------ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhh
Q 003669 418 SDVAGLGKIRLELEEIVKFFT------HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (804)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~l~------~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el 475 (804)
-+..++.+... ++...|. ....++++++.+..| +.++|++|+||||+++.|+|..
T Consensus 371 ld~~~lp~e~~---~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 371 LDIKGLPNEFQ---DILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eecccCChHHH---HHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34556655553 3444432 345778899988887 8899999999999999999854
No 497
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.94 E-value=0.00057 Score=73.42 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=37.0
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..+.++++.+..| +.|+||||+|||||+++|++.+.+..++|..
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 72 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 72 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3677888888877 8899999999999999999988776666544
No 498
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00028 Score=75.07 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=36.0
Q ss_pred HHHhccccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhcc
Q 003669 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (804)
Q Consensus 433 lv~~l~~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~ 477 (804)
+...|.+...++++++.+..| +.|+||||+|||||+++|++...+
T Consensus 13 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 13 LNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 333344445678888998888 889999999999999999997754
No 499
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.94 E-value=0.00057 Score=70.90 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=36.4
Q ss_pred ccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeecc
Q 003669 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (804)
Q Consensus 441 ~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~~ 484 (804)
..++++++.++.| ++|+||||+|||||+++|++...+..+++..
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 4677888888877 8899999999999999999987665555543
No 500
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.94 E-value=0.0013 Score=80.07 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=42.1
Q ss_pred HHHHHHHhcc--ccccccccCcccCCc--EEEECCCCCChhHHHHHHhhhhccceeeec
Q 003669 429 ELEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (804)
Q Consensus 429 ~l~~lv~~l~--~~~~~~~~gl~i~~g--vLL~Gp~GtGKTtLakaLA~el~~~~~~i~ 483 (804)
.++++...|. ++..++++++.+++| +.++|++|+|||||++.|+|...+.-+.|.
T Consensus 457 ~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 457 TFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3344444453 234688899999888 999999999999999999998877666553
Done!