BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003670
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/478 (24%), Positives = 183/478 (38%), Gaps = 113/478 (23%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGL 78
E LG TI SDKTGTLT N M +VA + + E + N+
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM-----TVAHMWFDNQIHEADTTENQS------------ 412
Query: 79 NTEEDLTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGK 138
G F + W R+ A+C+ A+ + ++
Sbjct: 413 --------------GAAFDK---TSATW---------SALSRIAALCNRAVFQAGQDNVP 446
Query: 139 VMYEAESPDEA-AFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNS 197
++ + + D + + ++ EL Q + + +P K VE + FNS
Sbjct: 447 ILKRSVAGDASESALLKCIELCCGSVQ------GMRDRNP---KIVE--------IPFNS 489
Query: 198 TRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRDFEVETRDHVNKYADAGL 251
T K I +E E + LL+ KGA + DR + NG + E D + +A L
Sbjct: 490 TNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAE-EPLKEDMKEAFQNAYL 548
Query: 252 RTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKL 311
L RVL + + +K++E AD DL +G A+ D
Sbjct: 549 ELGGLGERVLGFCHFALPEDKYNEGY-PFDADEPNFP-------TTDLCFVGLMAMIDPP 600
Query: 312 QNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEK 371
+ VPD + K AGIK+ ++TGD TA I ++ G + I E
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETI------------ED 648
Query: 372 TGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLEL 431
A+ I + Q+N + GS D K L+ + DDI + E
Sbjct: 649 IAARLNIP-------IGQVNPRDAKACVVHGS--------DLKDLSTEVLDDILHYHTE- 692
Query: 432 AIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGI--GISG 487
++ R+SP+QK ++ + G GDG ND L++ADIG+ GISG
Sbjct: 693 ------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPALKKADIGVAMGISG 743
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 111/479 (23%), Positives = 183/479 (38%), Gaps = 115/479 (24%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGL 78
E LG TI SDKTGTLT N M +VA + E
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM-----TVAHMWSDNQIHEA------------------- 375
Query: 79 NTEEDLTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGK 138
D TE++ G +F + W+ R+ +C+ A+ + ++
Sbjct: 376 ----DTTENQ---SGVSFDK---TSATWL---------ALSRIAGLCNRAVFQANQENLP 416
Query: 139 VMYEAESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNST 198
++ A + D + + + EL + K++ Y + + FNST
Sbjct: 417 ILKRAVAGDASESAL----------------LKCIELCCGSVKEMRERYTKIVEIPFNST 460
Query: 199 RKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRD--FEVETRDHVNKYADAG 250
K I ++ E + LL+ KGA + DR + +G++ + E +D + +A
Sbjct: 461 NKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKD---AFQNAY 517
Query: 251 LRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDK 310
L L RVL + +E+F E + D +D +L +G ++ D
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD--------NLCFVGLISMIDP 569
Query: 311 LQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALE 370
+ VPD + K AGIK+ ++TGD TA I ++ G + + E
Sbjct: 570 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETV------------E 617
Query: 371 KTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLE 430
A+ I + Q+N + GS D K +T DDI E
Sbjct: 618 DIAARLNIP-------VSQVNPRDAKACVVHGS--------DLKDMTSEQLDDILKYHTE 662
Query: 431 LAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGI--GISG 487
++ R+SP+QK ++ + G GDG ND ++ADIG+ GI+G
Sbjct: 663 -------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPASKKADIGVAMGIAG 713
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 131/314 (41%), Gaps = 57/314 (18%)
Query: 184 ERVYKLLNVLEFNSTRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRD--F 235
ER K++ + FNST K I ++ E + LL+ KGA + DR + +G++
Sbjct: 441 ERYTKIVEI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPL 499
Query: 236 EVETRDHVNKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETI 295
+ E +D + +A L L RVL + +E+F E + D +D
Sbjct: 500 DEELKD---AFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD------ 550
Query: 296 EKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQ 355
+L +G ++ D + VPD + K AGIK+ ++TGD TA I ++ G +
Sbjct: 551 --NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 608
Query: 356 QIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKS 415
+ E A+ I + Q+N + GS D K
Sbjct: 609 TV------------EDIAARLNIP-------VSQVNPRDAKACVVHGS--------DLKD 641
Query: 416 LTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGM 475
+T DDI E ++ R+SP+QK ++ + G GDG ND
Sbjct: 642 MTSEQLDDILKYHTE-------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPA 693
Query: 476 LQEADIGI--GISG 487
++ADIG+ GI+G
Sbjct: 694 SKKADIGVAMGIAG 707
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 38/238 (15%)
Query: 299 LVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQII 358
L G ++ D + VPD + K AGI++ ++TGD TA I + ++ G + +
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETV- 651
Query: 359 INLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTY 418
E A+ + + Q+N +A A +I+G L
Sbjct: 652 -----------EDIAARLRVP-------VDQVNR-----------KDARACVINGMQL-- 680
Query: 419 ALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQE 478
+D ++ +E ++ R+SP+QK ++ + G GDG ND L++
Sbjct: 681 --KDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKK 737
Query: 479 ADIGIGISGVEGMQAVM-SSDIAIAQFRYLERLLLV-HGHWCYRRISSMICYFFYKNI 534
ADIG+ + G+ G A ++D+ + + + V G + + I Y KNI
Sbjct: 738 ADIGVAM-GIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 19 EELGQVDTILSDKTGTLTCNSM 40
E LG I SDKTGTLT N M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 190 LNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVNKYADA 249
++ L FN KR ++ D G + KGA + + LAK D + ++KYA+
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 250 GLRTLILAYRVLDEE 264
GLR+L +A +V+ E+
Sbjct: 454 GLRSLAVARQVVPEK 468
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAM-----NRKKGSPLID 73
EE+ +D + SDKTGTLT N + K V + +GV + + + +R + ID
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLV--EVFCKGVEKDQVLLFAAMASRVENQDAID 375
Query: 74 VVNGLNTEEDLTESRPSVK-----GFNFKDERIA------NGNW 106
+ D E+R ++ FN D+R A +GNW
Sbjct: 376 AAM-VGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNW 418
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 440 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSS 497
CC R P K+ + ++S + T GDG ND L++A+IGI + G A +S
Sbjct: 675 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 732
Query: 498 DIAIAQFRYLERLLLV-HGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQP-AY 555
++ +A + + V G Y + I Y N+ + +FL A G P A
Sbjct: 733 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL----GLPEAL 788
Query: 556 NDWFLSLYNVFFTSLPVIALGVFDQDV 582
L N+ LP ALG D+
Sbjct: 789 IPVQLLWVNLVTDGLPATALGFNPPDL 815
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 127/346 (36%), Gaps = 71/346 (20%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 77
E LG I SDKTGTLT N M K + ID V+G
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDKVDGD 376
Query: 78 ---LNTEEDLTESRPSVKGFNFK-DERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVD 133
LN E +T S + +G K D+ I +G + D + + + A+C+ + + +
Sbjct: 377 FCSLN-EFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATICALCNDSSLDFN 429
Query: 134 ENTGKVMYEAESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVL 193
E G E+ + A + + F R + + E + ++ K L
Sbjct: 430 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEFTL 486
Query: 194 EFNSTRKRMSVIIRDEEGKIL-----LLCKGADSVMFDRLAKNGRDFEVETRDHVNKYAD 248
EF+ RK MSV + + KGA + DR Y
Sbjct: 487 EFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC----------------NYVR 530
Query: 249 AGLRTLILAYRVLDE-----EEYKVFNEKFS----EAKNSVSADRETLIDEVTETI--EK 297
G + + V ++ +E+ + +++ E ++D+ + + E
Sbjct: 531 VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYET 590
Query: 298 DLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 343
DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 591 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 440 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSS 497
CC R P K+ + ++S + T GDG ND L++A+IGI + G A +S
Sbjct: 674 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 731
Query: 498 DIAIAQFRYLERLLLV-HGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQP-AY 555
++ +A + + V G Y + I Y N+ + +FL A G P A
Sbjct: 732 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL----GLPEAL 787
Query: 556 NDWFLSLYNVFFTSLPVIALGVFDQDV 582
L N+ LP ALG D+
Sbjct: 788 IPVQLLWVNLVTDGLPATALGFNPPDL 814
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 127/346 (36%), Gaps = 71/346 (20%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 77
E LG I SDKTGTLT N M K + ID V+G
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDKVDGD 375
Query: 78 ---LNTEEDLTESRPSVKGFNFK-DERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVD 133
LN E +T S + +G K D+ I +G + D + + + A+C+ + + +
Sbjct: 376 FCSLN-EFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATICALCNDSSLDFN 428
Query: 134 ENTGKVMYEAESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVL 193
E G E+ + A + + F R + + E + ++ K L
Sbjct: 429 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEFTL 485
Query: 194 EFNSTRKRMSVIIRDEEGKIL-----LLCKGADSVMFDRLAKNGRDFEVETRDHVNKYAD 248
EF+ RK MSV + + KGA + DR Y
Sbjct: 486 EFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC----------------NYVR 529
Query: 249 AGLRTLILAYRVLDE-----EEYKVFNEKFS----EAKNSVSADRETLIDEVTETI--EK 297
G + + V ++ +E+ + +++ E ++D+ + + E
Sbjct: 530 VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYET 589
Query: 298 DLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 343
DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 590 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 440 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSS 497
CC R P K+ + ++S + T GDG ND L++A+IGI + G A +S
Sbjct: 674 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 731
Query: 498 DIAIAQFRYLERLLLV-HGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQP-AY 555
++ +A + + V G Y + I Y N+ + +FL A G P A
Sbjct: 732 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL----GLPEAL 787
Query: 556 NDWFLSLYNVFFTSLPVIALGVFDQDV 582
L N+ LP ALG D+
Sbjct: 788 IPVQLLWVNLVTDGLPATALGFNPPDL 814
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 126/346 (36%), Gaps = 71/346 (20%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 77
E LG I S KTGTLT N M K + ID V+G
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCKMFI------------------------IDKVDGD 375
Query: 78 ---LNTEEDLTESRPSVKGFNFK-DERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVD 133
LN E +T S + +G K D+ I +G + D + + + A+C+ + + +
Sbjct: 376 FCSLN-EFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATICALCNDSSLDFN 428
Query: 134 ENTGKVMYEAESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVL 193
E G E+ + A + + F R + + E + ++ K L
Sbjct: 429 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEFTL 485
Query: 194 EFNSTRKRMSVIIRDEEGKIL-----LLCKGADSVMFDRLAKNGRDFEVETRDHVNKYAD 248
EF+ RK MSV + + KGA + DR Y
Sbjct: 486 EFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC----------------NYVR 529
Query: 249 AGLRTLILAYRVLDE-----EEYKVFNEKFS----EAKNSVSADRETLIDEVTETI--EK 297
G + + V ++ +E+ + +++ E ++D+ + + E
Sbjct: 530 VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYET 589
Query: 298 DLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 343
DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 590 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 440 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSS 497
CC R P K+ + ++S + T GDG ND L++A+IGI + G A +S
Sbjct: 673 CCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 730
Query: 498 DIAIAQFRYLERLLLV-HGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQP-AY 555
++ +A + + V G Y + I Y N+ + +FL A G P A
Sbjct: 731 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL----GLPEAL 786
Query: 556 NDWFLSLYNVFFTSLPVIALGVFDQDV 582
L N+ LP ALG D+
Sbjct: 787 IPVQLLWVNLVTDGLPATALGFNPPDL 813
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 128/345 (37%), Gaps = 70/345 (20%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 77
E LG I SDKTGTLT N M K + ID ++G
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDRIDGD 375
Query: 78 --LNTEEDLTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDEN 135
L E +T S + +G E + N V D + + + A+C+ + +D N
Sbjct: 376 LCLLNEFSVTGSTYAPEG-----EVLKNDKPVRSGQYDGLVELATICALCNDS--SLDFN 428
Query: 136 TGKVMYE--AESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVL 193
K +YE E+ + A + + F R + + E + ++ K L
Sbjct: 429 ETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEFTL 485
Query: 194 EFNSTRKRMSVIIRDEEGKIL----LLCKGADSVMFDRLAKNGRDFEVETRDHVNKYADA 249
EF+ RK MSV + + + KGA + DR Y
Sbjct: 486 EFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRC----------------NYVRV 529
Query: 250 GLRTLILAYRVLDE-----EEYKVFNEKFS----EAKNSVSADRETLIDEVTETI--EKD 298
G + + V ++ +E+ + +++ E ++D+ T+ + E D
Sbjct: 530 GTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETD 589
Query: 299 LVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 343
L +G + D + V I AGI++ ++TGD TAI I
Sbjct: 590 LTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 307 VEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETA 340
VED +++ P+ I +L Q+GI+I +LTGD TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 463 TLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHG 515
T+A+GDGAND+ ML A +GI + ++ V + ++ YL+ +L + G
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLS---HPYLDTVLFLLG 391
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 13 RTSNLNEELGQVDTILSDKTGTLT 36
+ SN+ E++ ++DTI+ DKTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 36/130 (27%)
Query: 227 RLAKNGRDFEVETRDHVNKYADAGLRT-------LIL--AYRVLDEEEYKVFNEKFSEAK 277
+L +D E+E DH +A LRT L+L A +VL+E ++ + AK
Sbjct: 1052 QLGDIDQDVEIEKTDH---FAVVNLRTAAPTVCLLVLSQAEKVLEEVDWLI-------AK 1101
Query: 278 NSVSADRETLIDEVTET------------IEKDLVLLGATAV---EDKLQNGVP--DCID 320
SA++ETL D+VT IEK +V+ T V + +Q +P C+D
Sbjct: 1102 IKGSANQETLSDKVTPEDASSQAVPPTLLIEKAIVMQLGTLVTFFHELVQTALPSGSCVD 1161
Query: 321 KLAQAGIKIW 330
L + KI+
Sbjct: 1162 TLLKGLSKIY 1171
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 317 DCIDKLA-QAGIKIWV--LTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTG 373
+ ID++A +AG++ V +T + ME +N +++ + L+ I +EK
Sbjct: 20 ETIDEIAREAGVEEEVKKITKEAMEGKLN-------FEQSLRKRVSLLKDLPIEKVEKAI 72
Query: 374 AKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAI 433
+ T+ ++E++ N G SGG A I + L YA + + K +L
Sbjct: 73 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTG 132
Query: 434 GCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIG 484
+ ++ + ++ + T+A+GDGAND+ M ++A + I
Sbjct: 133 DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIA 183
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 317 DCIDKLA-QAGIKIWV--LTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTG 373
+ ID++A +AG++ V +T + ME +N +++ + L+ I +EK
Sbjct: 20 ETIDEIAREAGVEEEVKKITKEAMEGKLN-------FEQSLRKRVSLLKDLPIEKVEKAI 72
Query: 374 AKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAI 433
+ T+ ++E++ N G SGG A I + L YA + + K +L
Sbjct: 73 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTG 132
Query: 434 GCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIG 484
+ ++ + ++ + T+A+GDGAND+ M ++A + I
Sbjct: 133 DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIA 183
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 303 GATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLE 362
G AV D L+ + +L + GIK+ ++TGD +A I +++ ++L
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS----------RELNLDLV 499
Query: 363 TPEILALEKTGAKSEITKASKESVLHQINEGKNQLSA 399
E+L +K+ E+ K + V+ + +G N A
Sbjct: 500 IAEVLPHQKS---EEVKKLQAKEVVAFVGDGINDAPA 533
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 445 PRQKALVTRLVKSGTGKTTLA-IGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAI 501
P QK + VK K +A +GDG ND L +AD+GI + G AV S DI +
Sbjct: 505 PHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGDIVL 558
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 303 GATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLE 362
G AV D L+ + +L + GIK+ ++TGD +A I +++ ++L
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS----------RELNLDLV 577
Query: 363 TPEILALEKTGAKSEITKASKESVLHQINEGKNQLSA 399
E+L +K+ E+ K + V+ + +G N A
Sbjct: 578 IAEVLPHQKS---EEVKKLQAKEVVAFVGDGINDAPA 611
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 445 PRQKALVTRLVKSGTGKTTLA-IGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAI 501
P QK + VK K +A +GDG ND L +AD+GI + G AV S DI +
Sbjct: 583 PHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGDIVL 636
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 290 EVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSL 349
EV E + V+ T KL+ + +L + GIK+ +TGD +A I
Sbjct: 4 EVAEKVTA--VIFDKTGTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAIS----- 56
Query: 350 LRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFAL 409
+++ ++L E+L +K+ E+ K + V+ + +G N A + A+
Sbjct: 57 -----RELNLDLVIAEVLPHQKS---EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV 108
Query: 410 IIDGKSLTYALEDDIKN 426
G + DD+++
Sbjct: 109 ---GSGDIVLIRDDLRD 122
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 445 PRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQ 503
P +KA + V+ T +GDG ND L +AD+GI I G AV ++DI + +
Sbjct: 192 PHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI-GAGTDVAVETADIVLVR 247
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 463 TLAIGDGANDVGMLQEADIGIGI 485
T++ GDG ND+ ML+ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM 228
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 428 FLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISG 487
F+E A G A V P+ K V +++ G GDG ND L++AD GI + G
Sbjct: 600 FVEAADGFAEVF-----PQHKYNVVEILQQ-RGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 13 RTSNLNEELGQVDTILSDKTGTLT 36
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLT 40
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 463 TLAIGDGANDVGMLQEADIGIGI 485
T++ GDG ND+ ML+ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM 228
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 13 RTSNLNEELGQVDTILSDKTGTLT 36
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLT 40
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 445 PRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQ 503
P +KA + V+ T +GDG ND L +AD+GI I G AV ++DI + +
Sbjct: 192 PHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI-GAGTDVAVETADIVLVR 247
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 457 SGTGKTTLAIGDGANDVGMLQEADIGIGISGV 488
SG TTL +GDG ND +L+ D + + G+
Sbjct: 205 SGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGL 236
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 442 RSSPRQKALVTRLVKSGTGKTTLA------------IGDGANDVGMLQEADIGIGI 485
+S+P ++ + V GTG +LA IGD ND+ M++ A +G+ +
Sbjct: 184 KSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAV 239
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 445 PRQKALVTRLVKSGTGKTTLA-IGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAI 501
P QK + VK K +A +GDG ND L +AD+GI + G AV S DI +
Sbjct: 191 PHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV-GSGSDVAVESGDIVL 244
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 464 LAIGDGANDVGMLQEADIGIGISGV-EGMQAV 494
+A GDG ND+ ML+ A IG+ + E +Q+V
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAMGNASEKVQSV 245
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 463 TLAIGDGANDVGMLQEADIGIG 484
T+A+GDGAND+ M+ A +G+
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVA 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,186,983
Number of Sequences: 62578
Number of extensions: 964517
Number of successful extensions: 2139
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 90
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)