Query 003670
Match_columns 804
No_of_seqs 294 out of 2748
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:45:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003670.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1718-1721//hhsearch_pdb/003670hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 668.2 43.1 618 5-742 327-992 (995)
2 3ixz_A Potassium-transporting 1.0 1 1 660.8 52.1 613 4-744 360-1025(1034)
3 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 650.0 39.6 612 5-742 356-1017(1028)
4 1mhs_A Proton pump, plasma mem 1.0 1 1 559.1 20.6 521 5-743 353-882 (920)
5 3b8c_A ATPase 2, plasma membra 1.0 1 1 546.0 -8.4 532 4-744 303-846 (885)
6 3rfu_A Copper efflux ATPase; a 1.0 1 1 348.2 26.7 293 5-539 401-695 (736)
7 3j09_A COPA, copper-exporting 1.0 1 1 347.6 23.9 289 5-539 385-675 (723)
8 3j08_A COPA, copper-exporting 1.0 1 1 341.4 23.8 289 5-539 307-597 (645)
9 2yj3_A Copper-transporting ATP 1.0 1 1 211.4 0.0 138 297-524 123-262 (263)
10 3a1c_A Probable copper-exporti 1.0 1 1 181.0 21.9 274 4-523 12-287 (287)
No 1
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=668.17 Aligned_cols=618 Identities=21% Similarity=0.217 Sum_probs=447.8
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++++|+||++++||||||||||+|+|+|.++++.+..++......+ . .-.+...
T Consensus 327 ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~--~-~~~~~~~------------- 390 (995)
T 3ar4_A 327 MAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE--F-SITGSTY------------- 390 (995)
T ss_dssp HHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEEEE--E-EECCSSS-------------
T ss_pred HCCCCCEECCCHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCE--E-ECCCCCC-------------
T ss_conf 44178486134155550383399765888766585699999834755676554302--5-4047776-------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 46989877867670333166888999907899999998540621510038998168832792199999999985969996
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFYQ 164 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~ 164 (804)
+...+-...+........+.++.++.++++||++.++.++..+.+. ..++|+|.|++.++++.|+ + .
T Consensus 391 ----------~p~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~-~~g~p~E~Al~~~a~~~g~-~-~ 457 (995)
T 3ar4_A 391 ----------APEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYE-KVGEATETALTTLVEKMNV-F-N 457 (995)
T ss_dssp ----------SSCCCEEETTEECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEE-EESCHHHHHHHHHHHHHCT-T-C
T ss_pred ----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE-ECCCCCHHHHHHHHHHCCC-C-C
T ss_conf ----------8863101366434444558999999999874888056568898325-5479647999999998399-6-4
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-----EEEEEECCCHHHHHHHHHCC--------
Q ss_conf 42875799844887765301788895753698999538999982899-----09999828215757886206--------
Q 003670 165 RTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEG-----KILLLCKGADSVMFDRLAKN-------- 231 (804)
Q Consensus 165 r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~-----~~~l~~KGa~~~i~~~~~~~-------- 231 (804)
+....+...+.........+..|++++.+||+|+||||||+++.++| ++.+|+||||+.|+++|...
T Consensus 458 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~ 537 (995)
T 3ar4_A 458 TEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVP 537 (995)
T ss_dssp CCCTTSCTTTSTTHHHHHHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEETTEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCHHHCCCCCCC
T ss_conf 10001342010121015566417457774048888756999834898766644499975887999985405442897324
Q ss_pred -CCCCHHHHHHHHHHH--HHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf -964089999999999--85356588778870799899999999999731100238998999999641055476777420
Q 003670 232 -GRDFEVETRDHVNKY--ADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVE 308 (804)
Q Consensus 232 -~~~~~~~~~~~l~~~--~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~ 308 (804)
.++.++.+.++++++ +.+|+|||++|||+++..+. ...+ .+ ....+.+|+|++++|+++++
T Consensus 538 l~~~~~~~~~~~~~~~~~a~~GlRvLa~A~k~~~~~~~----------~~~~-~~-----~~~~~~~e~~l~~lG~~~i~ 601 (995)
T 3ar4_A 538 MTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVL-DD-----SSRFMEYETDLTFVGVVGML 601 (995)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCCEEEEEEEESSCCCGG----------GCCT-TC-----GGGHHHHTCSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC----------CCCC-CC-----CHHHHHHCCCCEEEEEEEEC
T ss_conf 99999999999999877630561488999983476511----------1222-34-----02445530694899998525
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 35568909999999964991999918877559999988594458971799905662456753110048998986666788
Q 003670 309 DKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLH 388 (804)
Q Consensus 309 D~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 388 (804)
|++|++++++|+.|+++||++||+|||+..||.++|+++|+...+...
T Consensus 602 D~lr~~~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia~~lgi~~~~~~i-------------------------------- 649 (995)
T 3ar4_A 602 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV-------------------------------- 649 (995)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTSSCTTCCC--------------------------------
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCC--------------------------------
T ss_conf 889666999999999869989998999789999999983967788753--------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 86210111224799998718999050246860477899999997217910998199454999999987248985999638
Q 003670 389 QINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGD 468 (804)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGD 468 (804)
...+++|..+..+.++.+.+. .. +..+|||++|+||..+|+.+++ .|+.|+|+||
T Consensus 650 ------------------~~~~~~g~~~~~l~~~~~~~~----~~--~~~v~~r~~P~~K~~~v~~l~~-~g~~v~~~GD 704 (995)
T 3ar4_A 650 ------------------ADRAYTGREFDDLPLAEQREA----CR--RACCFARVEPSHKSKIVEYLQS-YDEITAMTGD 704 (995)
T ss_dssp ------------------TTTEEEHHHHHTSCHHHHHHH----HH--HCCEEESCCSSHHHHHHHHHHT-TTCCEEEEEC
T ss_pred ------------------CCEEEECHHHHHCCHHHHHHH----HH--HCCEEEEECHHHHHHHHHHHHH-CCCEEEEECC
T ss_conf ------------------534898366462899999998----75--3738997089999999999997-7997999838
Q ss_pred CCCCHHHHHHCCCCEEECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96784554305824032486302341011011114--7557899987300001144577999988799999999999986
Q 003670 469 GANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLSVFLYEAY 546 (804)
Q Consensus 469 G~ND~~ml~~AdvGI~i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~~~~~~~~ 546 (804)
|.||++||++||+||+|+ +....|+++||+++.+ |..+.++ +.|||++|.|+++++.|.+++|+..+++.+++.++
T Consensus 705 G~ND~~alk~Advgiamg-~g~~~ak~aAd~vl~~~~~~~i~~~-i~~GR~~~~~i~k~i~~~l~~Ni~~~~~~~~~~~~ 782 (995)
T 3ar4_A 705 GVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAA-VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL 782 (995)
T ss_dssp SGGGHHHHHHSTEEEEET-TSCHHHHHTCSEEETTCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 814499998789679967-8899999738899777877899999-99989999999999999999999999999999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20777666137999999999756669877615667884653005310350012332318989999999999999999999
Q 003670 547 TTFSGQPAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLFSWRRIFGWMFNGLYSAIIIFFFC 626 (804)
Q Consensus 547 ~~~s~~~~~~~~~~~~~n~~~~~lp~~~l~~~~~d~~~~~~~~~P~ly~~~~~~~~~~~~~~~~~~~~~~~~s~~if~~~ 626 (804)
. ...++.++|++|+|++++.+|++++|++++ +++.+.++|+ .++..+++++.++.|+..|+++++++++.+
T Consensus 783 g---~~~pl~~~qil~~nl~~d~~p~l~l~~~~~--~~~~m~~~P~----~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 853 (995)
T 3ar4_A 783 G---LPEALIPVQLLWVNLVTDGLPATALGFNPP--DLDIMDRPPR----SPKEPLISGWLFFRYMAIGGYVGAATVGAA 853 (995)
T ss_dssp T---CCCSSCHHHHHHHHHTTTHHHHHHHTTCCC--CTTGGGSCCC----CTTCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4---762578999999999998877776306777--7568737999----976454489999999999999999999999
Q ss_pred HHHHC--CCC--CC-----------CCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH
Q ss_conf 97412--554--47-----------9996--------10235577799999999999999987421-------0168899
Q 003670 627 KKAME--HQA--FN-----------DDGK--------TVGRDIFGATMYTCIVWVVNLQLALAISY-------FTLIQHI 676 (804)
Q Consensus 627 ~~~~~--~~~--~~-----------~~g~--------~~~~~~~~t~~ft~~v~~vn~~~~l~~~~-------~~~~~~~ 676 (804)
.+.+. ... .. .++. .......+|+.|+++++...++... +++ ...+.|.
T Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~-~r~~~~~~~~~~~~~n~ 932 (995)
T 3ar4_A 854 AWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALN-SLSENQSLMRMPPWVNI 932 (995)
T ss_dssp HHHTSSCSSSCCCTTCCGGGCSSCSSCCSCCSCSCCCGGGCHHHHHHHHHHHHHHHHHHHHT-TSCSSCCTTTSCGGGCH
T ss_pred HHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHCCCCCCCH
T ss_conf 99998515665433000001122344433334332210010135659999999999999998-60255431005775479
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999851187787405899999970285888999999999889999999999863
Q 003670 677 FIWGSIALWYLFMLAYGAITPTHSTNAYKVFIEALAPAPLFWLVTLFVVISTLIPYFAYSAIQMRF 742 (804)
Q Consensus 677 ~i~~si~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~wl~~ll~~~~~ll~~~i~k~i~r~~ 742 (804)
.++.++++.++++++..++|. ++. +|...++++.+|+.+++++++.++.+++.|+++|.|
T Consensus 933 ~l~~~~~~~~~l~~~~~~~p~-~~~-----~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~~r~~ 992 (995)
T 3ar4_A 933 WLLGSICLSMSLHFLILYVDP-LPM-----IFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 992 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHSTH-HHH-----HTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH-----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999998887-777-----611578999999999999999999999999994117
No 2
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=660.80 Aligned_cols=613 Identities=18% Similarity=0.168 Sum_probs=463.6
Q ss_pred CCCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 78899914427982111039308870777513536079989999586418983278998542079986433468887544
Q 003670 4 EEADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEED 83 (804)
Q Consensus 4 ~~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (804)
+..++++++|+++++|+||++++||||||||||+|+|.+.++++++..|.....+.
T Consensus 360 rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~------------------------ 415 (1034)
T 3ixz_A 360 RLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTED------------------------ 415 (1034)
T ss_pred HHHHCCEEECCHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCC------------------------
T ss_conf 87338828647678886158729972897872368379999997795122567666------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC--CEEEECCCCCHHHHHHHHHHCCCE
Q ss_conf 446989877867670333166888999907899999998540621510038998--168832792199999999985969
Q 003670 84 LTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTG--KVMYEAESPDEAAFVIAARELGFE 161 (804)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~--~~~y~~~sp~e~Alv~~a~~~g~~ 161 (804)
..+. ..++..+..+.+++++++||++....+++.. .-....++|.|.|+++++...+..
T Consensus 416 -------~~~~------------~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~ 476 (1034)
T 3ixz_A 416 -------QSGQ------------TFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGN 476 (1034)
T ss_pred -------CCCC------------CCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCC
T ss_conf -------5665------------567677899999999887162665357677766574355492599999999985788
Q ss_pred EEEECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECC---CCEEEEEECCCHHHHHHHHHCC-------
Q ss_conf 996428757998448877653017888957536989995389999828---9909999828215757886206-------
Q 003670 162 FYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAKN------- 231 (804)
Q Consensus 162 ~~~r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~---~~~~~l~~KGa~~~i~~~~~~~------- 231 (804)
... .+..|+++..+||+|+||||+++++.+ ++++.+|+||||+.|+++|+..
T Consensus 477 ~~~------------------~~~~~~~~~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~~~~~~ 538 (1034)
T 3ixz_A 477 AMG------------------YRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQEL 538 (1034)
T ss_pred HHH------------------HHHHCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf 688------------------89748606995035777268999983378886089999688499999737755289640
Q ss_pred --CCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEEC
Q ss_conf --964089999999999853565887788707998999999999997311002389989999996410554767774203
Q 003670 232 --GRDFEVETRDHVNKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVED 309 (804)
Q Consensus 232 --~~~~~~~~~~~l~~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D 309 (804)
.++.++.+.+.+++++.+|+|+|++|+|.++++++..+... +. +..+.+|+|++|+|+++++|
T Consensus 539 ~l~~~~~~~~~~~~~~~a~~G~RvLa~A~~~l~~~~~~~~~~~----------~~-----~~~~~~e~~l~~lGlv~i~D 603 (1034)
T 3ixz_A 539 PLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAF----------DV-----EAMNFPTSGLSFAGLVSMID 603 (1034)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHCCCCCCC----------CH-----HHHHCCCCCCEEEEEEECCC
T ss_conf 1999999999999999871475823686785580004321124----------53-----44302224867988871368
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 55689099999999649919999188775599999885944589717999056624567531100489989866667888
Q 003670 310 KLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQ 389 (804)
Q Consensus 310 ~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 389 (804)
|+|++++++|+.|+++||++||+|||+..||.++|+++|+..++...+ .. .......
T Consensus 604 p~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia~~lgi~~~~~~~i---------~~-----------~~~~~~~--- 660 (1034)
T 3ixz_A 604 PPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETV---------ED-----------IAARLRV--- 660 (1034)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHH---------HH-----------HHHHHCC---
T ss_conf 870659999999998699699996997799999999869998872478---------88-----------8876176---
Q ss_pred HHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 62101112247999987189990502468604778999999972179109981994549999999872489859996389
Q 003670 390 INEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDG 469 (804)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG 469 (804)
.... .........+++|..+.....++ +.+....++.++|+|++|+||..+++.+++ .|..|+|+|||
T Consensus 661 ---~~~~----~~~~~~~~~~~~g~~l~~~~~~~----l~~~~~~~~~~v~ar~~P~~K~~iv~~lq~-~g~~V~a~GDG 728 (1034)
T 3ixz_A 661 ---PVDQ----VNRKDARACVINGMQLKDMDPSE----LVEALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTGDG 728 (1034)
T ss_pred ---CCHH----CCCCCCCEEEEECHHHHHCCHHH----HHHHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCC
T ss_conf ---5000----25445431677167666389999----999987378269996698999999999997-69999998795
Q ss_pred CCCHHHHHHCCCCEEECCCCHHHHHCCCCHHCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6784554305824032486302341011011114755--78999873000011445779999887999999999999862
Q 003670 470 ANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRY--LERLLLVHGHWCYRRISSMICYFFYKNITFGLSVFLYEAYT 547 (804)
Q Consensus 470 ~ND~~ml~~AdvGI~i~g~~~~~a~~asD~~i~~f~~--l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~~~~~~~~~ 547 (804)
.||++||++||+||+|+++....++++||+++.++++ +..+ +.|||++|.|+++++.|.+++|+..+++.+++.++.
T Consensus 729 ~ND~~mLk~A~vGIAMg~ng~d~aK~aAD~Vl~~~~~~gI~~a-i~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~~~ 807 (1034)
T 3ixz_A 729 VNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTG-VEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVS 807 (1034)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHCCEEECCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7769999978932980775679999854999666883399999-999889999999999999999999999999999982
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCC-CCCCCCHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 077766613799999999975666987761566788465300531035001-2332318989999-99999999999999
Q 003670 548 TFSGQPAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGV-QNVLFSWRRIFGW-MFNGLYSAIIIFFF 625 (804)
Q Consensus 548 ~~s~~~~~~~~~~~~~n~~~~~lp~~~l~~~~~d~~~~~~~~~P~ly~~~~-~~~~~~~~~~~~~-~~~~~~~s~~if~~ 625 (804)
...++.++|++|+|++++.+|+++++.++ +++++|.+.|+ .+ +..++++.+++.. +..|++++++.|+.
T Consensus 808 ---~~~pl~~~qiL~inl~~d~~palal~~e~--~~~~~m~~~Pr----~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 878 (1034)
T 3ixz_A 808 ---VPLPLGCITILFIELCTDIFPSVSLAYEK--AESDIMHLRPR----NPKRDRLVNEPLAAYSYFQIGAIQSFAGFTD 878 (1034)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---14668999999999998888888851688--97326647998----9753445578899999999999999999999
Q ss_pred HHHHHCCCCCCC---------------------CCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-----C--
Q ss_conf 997412554479---------------------9961-------0235577799999999999999987421-----0--
Q 003670 626 CKKAMEHQAFND---------------------DGKT-------VGRDIFGATMYTCIVWVVNLQLALAISY-----F-- 670 (804)
Q Consensus 626 ~~~~~~~~~~~~---------------------~g~~-------~~~~~~~t~~ft~~v~~vn~~~~l~~~~-----~-- 670 (804)
+++.+....+.. .|.. .......|++|+++++.+.+..+. +++ |
T Consensus 879 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~q~~~~~~-~r~~~~s~~~~ 957 (1034)
T 3ixz_A 879 YFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLI-RKTRRLSAFQQ 957 (1034)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCC
T ss_conf 99999636776200001112223344443101112111011100000257989999999999999983-12688765426
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 16889999999999999999985118778740589999997028588899999999988999999999986399
Q 003670 671 TLIQHIFIWGSIALWYLFMLAYGAITPTHSTNAYKVFIEALAPAPLFWLVTLFVVISTLIPYFAYSAIQMRFFP 744 (804)
Q Consensus 671 ~~~~~~~i~~si~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~wl~~ll~~~~~ll~~~i~k~i~r~~~P 744 (804)
.++.|..+|+++++.++++++..++|+ ++. +|...++++..|+.+++++++.++.+++.|++.|++-+
T Consensus 958 ~~~~N~~l~~~~~~~~~l~~~~~~~p~-~~~-----~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~ 1025 (1034)
T 3ixz_A 958 GFFRNRILVIAIVFQVCIGCFLCYCPG-MPN-----IFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPG 1025 (1034)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 775368999999999999999998266-777-----75678898999999999999999999999999974799
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=650.00 Aligned_cols=612 Identities=20% Similarity=0.210 Sum_probs=454.2
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++++|+||++++||||||||||+|+|++.++++.+..|.....+
T Consensus 356 mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~-------------------------- 409 (1028)
T 2zxe_A 356 MARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTE-------------------------- 409 (1028)
T ss_dssp HHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTEEEECCCCT--------------------------
T ss_pred HHHCCCEECCCHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCEEEECCCCC--------------------------
T ss_conf 855891644456766414762995168888887738999999898465136777--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC--CEEEECCCCCHHHHHHHHHHCCCEE
Q ss_conf 46989877867670333166888999907899999998540621510038998--1688327921999999999859699
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTG--KVMYEAESPDEAAFVIAARELGFEF 162 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~--~~~y~~~sp~e~Alv~~a~~~g~~~ 162 (804)
. ..+. ..+..++..+++++++++||++.++.+.+.. ...+..++|+|.|++++++..|...
T Consensus 410 --~---~~~~------------~~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~ 472 (1028)
T 2zxe_A 410 --N---QSGA------------AFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSV 472 (1028)
T ss_dssp --T---CCSC------------CCCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCH
T ss_pred --C---CCCC------------CCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCH
T ss_conf --7---6554------------4466778999999999865787650477777664530078940999999999958988
Q ss_pred EEECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECC---CCEEEEEECCCHHHHHHHHHCC--------
Q ss_conf 96428757998448877653017888957536989995389999828---9909999828215757886206--------
Q 003670 163 YQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAKN-------- 231 (804)
Q Consensus 163 ~~r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~---~~~~~l~~KGa~~~i~~~~~~~-------- 231 (804)
. ..+..|+++..+||+|+||||+++++.+ ++++.+|+||||+.|+++|...
T Consensus 473 ~------------------~~~~~~~~~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~ 534 (1028)
T 2zxe_A 473 Q------------------GMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEP 534 (1028)
T ss_dssp H------------------HHHHHSCEEEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECBTTBCCB
T ss_pred H------------------HHHHHCCEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 8------------------9887482678704476666479999405788871799993882899987456533897212
Q ss_pred -CCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf -9640899999999998535658877887079989999999999973110023899899999964105547677742035
Q 003670 232 -GRDFEVETRDHVNKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDK 310 (804)
Q Consensus 232 -~~~~~~~~~~~l~~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~ 310 (804)
+++.++.+.+++++++.+|+|||++|+|+++++++.++. . .+++ ..+.+|+|++|+|+++++||
T Consensus 535 l~~~~~~~~~~~~~~~a~~G~RvL~~A~~~l~~~~~~~~~--------~--~~~~-----~~~~~e~~l~~lG~i~i~Dp 599 (1028)
T 2zxe_A 535 LKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGY--------P--FDAD-----EPNFPTTDLCFVGLMAMIDP 599 (1028)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSTTSCTTC--------C--CCTT-----TTCSCCSSEEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC--------C--CCHH-----HHHHHHCCEEEEEEECCCCC
T ss_conf 8889999999999999855997999998746822134201--------2--4624-----55555438099865115789
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 56890999999996499199991887755999998859445897179990566245675311004899898666678886
Q 003670 311 LQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQI 390 (804)
Q Consensus 311 lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 390 (804)
+|++++++|+.|+++||++||+|||+..||.++|++|||...++..+ ... ....+.
T Consensus 600 lr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ia~~lgi~~~~~~~i---------~~~-----------~~~~~~---- 655 (1028)
T 2zxe_A 600 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETI---------EDI-----------AARLNI---- 655 (1028)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTSSCTTCCCH---------HHH-----------HHHTTC----
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHH---------HHH-----------HHHCCC----
T ss_conf 98448999999998699799988997799999999869887883367---------777-----------764186----
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 21011122479999871899905024686047789999999721791099819945499999998724898599963896
Q 003670 391 NEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGA 470 (804)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ 470 (804)
..... ........+++|..+..+.++. +.++...+..++|||++|+||..+|+.+++ .|..|+|+|||.
T Consensus 656 --~~~~~----~~~~~~~~vi~G~~l~~~~~~~----l~~~~~~~~~~v~ar~~P~~K~~iV~~lq~-~g~~V~~iGDG~ 724 (1028)
T 2zxe_A 656 --PIGQV----NPRDAKACVVHGSDLKDLSTEV----LDDILHYHTEIVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGV 724 (1028)
T ss_dssp --CGGGS----CGGGCCEEEEEHHHHTTCCHHH----HHHHHHHCSEEEEESCCHHHHHHHHHHHHH-TTCCEEEEECSG
T ss_pred --CHHHC----CCCCCCEEEEECHHHHHCCHHH----HHHHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCC
T ss_conf --32221----5556626998808856479999----999986279679998588899999999996-899899985885
Q ss_pred CCHHHHHHCCCCEEECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 784554305824032486302341011011114--755789998730000114457799998879999999999998620
Q 003670 471 NDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTT 548 (804)
Q Consensus 471 ND~~ml~~AdvGI~i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~~~~~~~~~~ 548 (804)
||++||++||+||+|+.+....|+.+||+++.+ |..+.++ +.|||++|.|+++++.|.+++|+..++..+++.++.
T Consensus 725 ND~paLk~AdvGIAmg~~gtd~ak~aAD~Vl~~~~~~~I~~~-i~~gR~i~~ni~k~i~~~l~~n~~~~~~~~~~~~~~- 802 (1028)
T 2zxe_A 725 NDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTG-VEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGN- 802 (1028)
T ss_dssp GGHHHHHHSSEEEEESSSCCHHHHHHCSEEETTCCTHHHHHH-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHCCCEEEECCCCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 339999868911996776588899854899557987799999-999999999999999999999999999999999976-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 77766613799999999975666987761566788465300531035001233231898999-99999999999999999
Q 003670 549 FSGQPAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLFSWRRIFG-WMFNGLYSAIIIFFFCK 627 (804)
Q Consensus 549 ~s~~~~~~~~~~~~~n~~~~~lp~~~l~~~~~d~~~~~~~~~P~ly~~~~~~~~~~~~~~~~-~~~~~~~~s~~if~~~~ 627 (804)
...++.+++++|+|++++.+|++++++++ +.++++.+.|+- ...+.+++++.++. |+..|+++++++|+.++
T Consensus 803 --~~~~l~~~qil~inl~~d~~pa~al~~e~--~~~~~m~~~Pr~---~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 875 (1028)
T 2zxe_A 803 --VPLPLGTVTILCIDLGTDMVPAISLAYEQ--AESDIMKRQPRN---PKTDKLVNERLISMAYGQIGMIQALGGFFSYF 875 (1028)
T ss_dssp --CCCSSCHHHHHHHHTTTTHHHHHHGGGCC--CSSCGGGSCCCC---TTTCCSSCHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --66445799999999999999999860286--614565159999---52134527999999999999999999999999
Q ss_pred HHHCCCCC-------------CC--------CCCCC-------HHHHHHHHHHHHHHHHHHHHHHHH-HHCCHH----HH
Q ss_conf 74125544-------------79--------99610-------235577799999999999999987-421016----88
Q 003670 628 KAMEHQAF-------------ND--------DGKTV-------GRDIFGATMYTCIVWVVNLQLALA-ISYFTL----IQ 674 (804)
Q Consensus 628 ~~~~~~~~-------------~~--------~g~~~-------~~~~~~t~~ft~~v~~vn~~~~l~-~~~~~~----~~ 674 (804)
+.+....+ .. .|... ......|++|+++++.+.+..... +...++ +.
T Consensus 876 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~ 955 (1028)
T 2zxe_A 876 VILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMK 955 (1028)
T ss_dssp HHHHHTTCCHHHHTTCHHHHSCTTCCCEECTTSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCHHHHCSC
T ss_pred HHHHCCCCCCCHHHCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCC
T ss_conf 98740676620131022001035654211345532223444456667889999999999999999874687511015776
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999851187787405899999970285888999999999889999999999863
Q 003670 675 HIFIWGSIALWYLFMLAYGAITPTHSTNAYKVFIEALAPAPLFWLVTLFVVISTLIPYFAYSAIQMRF 742 (804)
Q Consensus 675 ~~~i~~si~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~wl~~ll~~~~~ll~~~i~k~i~r~~ 742 (804)
|..+|.++++.++++++..++|+ ++. +|...++++..|+.++.+++..++...+.|++.|++
T Consensus 956 n~~l~~~~~~~~~l~~~~~~~p~-~~~-----~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~~r~~ 1017 (1028)
T 2zxe_A 956 NKILIFGLFEETALAAFLSYCPG-TDV-----ALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRS 1017 (1028)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSTT-HHH-----HTCCCCCCGGGGGTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999999998656-776-----421888999999999999999999999999998706
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=559.06 Aligned_cols=521 Identities=17% Similarity=0.181 Sum_probs=372.2
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++.+|+||++++||||||||||+|+|.+.+++..+. +
T Consensus 353 mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g-~-------------------------------- 399 (920)
T 1mhs_A 353 LAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAG-V-------------------------------- 399 (920)
T ss_dssp HHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSC-C--------------------------------
T ss_pred HHHCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCC-C--------------------------------
T ss_conf 9868838705713555436768997788875555316999850699-8--------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 46989877867670333166888999907899999998540621510038998168832792199999999985969996
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFYQ 164 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~ 164 (804)
++ .+++++.++|+... . . +.||.|.|++++++..+..
T Consensus 400 ------------------------~~-----~~ll~~a~l~~~~~----~-~------~~~P~e~Al~~~~~~~~~~--- 436 (920)
T 1mhs_A 400 ------------------------DP-----EDLMLTACLAASRK----K-K------GIDAIDKAFLKSLKYYPRA--- 436 (920)
T ss_dssp ------------------------CC-----THHHHHHHHSCCCS----S-C------SCCSHHHHHHHHHHHSSSC---
T ss_pred ------------------------CH-----HHHHHHHHHHCCCC----C-C------CCCHHHHHHHHHHHHCCCC---
T ss_conf ------------------------98-----99999999854776----6-6------8985899999999964631---
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCC---CCCCHHHHHH
Q ss_conf 4287579984488776530178889575369899953899998289909999828215757886206---9640899999
Q 003670 165 RTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKN---GRDFEVETRD 241 (804)
Q Consensus 165 r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~---~~~~~~~~~~ 241 (804)
.+ ....|++++.+||+|.||||+++++.++|+..+++||||+.|+++|... +++.++.+.+
T Consensus 437 ----------~~------~~~~~~~~~~~pF~s~~k~ms~iv~~~~g~~~~~~KGape~il~~c~~~~~~~~~~~~~~~~ 500 (920)
T 1mhs_A 437 ----------KS------VLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKN 500 (920)
T ss_dssp ----------CG------GGSCCCEEEEEEEETTTTEEEEEECCSSSSCEEEEEECHHHHHHHCCCSSCCCHHHHHHHHH
T ss_pred ----------HH------HCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf ----------01------01355335786116778859999996799189999087999998613567898788998999
Q ss_pred HHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 99999853565887788707998999999999997311002389989999996410554767774203556890999999
Q 003670 242 HVNKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDK 321 (804)
Q Consensus 242 ~l~~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~ 321 (804)
++++++.+|+|+|++|+|.. |.+++++|+++++||+|++++++|+.
T Consensus 501 ~~~~~a~~G~RvL~vA~~~~----------------------------------e~~l~~lGli~i~Dp~R~ea~~aI~~ 546 (920)
T 1mhs_A 501 KVAEFATRGFRSLGVARKRG----------------------------------EGSWEILGIMPCMDPPRHDTYKTVCE 546 (920)
T ss_dssp HHHHHHTSSCCCCEECCCSS----------------------------------SCSCCCCBBCCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEEECC----------------------------------CCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 99999867997999998326----------------------------------65307889999734321017999999
Q ss_pred HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99649919999188775599999885944589717999056624567531100489989866667888621011122479
Q 003670 322 LAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASG 401 (804)
Q Consensus 322 L~~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (804)
|+++||++||+|||+..||.+||+++||..... +.+.. .+..
T Consensus 547 l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~~-----~~~~~-------------------------------~~~g-- 588 (920)
T 1mhs_A 547 AKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-----NAERL-------------------------------GLGG-- 588 (920)
T ss_dssp HHHHTCEEEEEESSCHHHHHHHHHHHTSSCSCC-----CSSSS-------------------------------SSCB--
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC-----CCCCE-------------------------------EECC--
T ss_conf 862574499983897899999999849996546-----75412-------------------------------4227--
Q ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCC
Q ss_conf 99987189990502468604778999999972179109981994549999999872489859996389678455430582
Q 003670 402 GSSEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADI 481 (804)
Q Consensus 402 ~~~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~Adv 481 (804)
. . .+++..+... ..+..+|+|++|+||..+|+.+|+ .|+.|+|+|||.||+|||++||+
T Consensus 589 ~--~----~~~~~el~~~--------------~~~~~V~arv~P~~K~~iV~~Lq~-~g~~Vam~GDGvNDapaLk~Adv 647 (920)
T 1mhs_A 589 G--G----DMPGSEVYDF--------------VEAADGFAEVFPQHKYNVVEILQQ-RGYLVAMTGDGVNDAPSLKKADT 647 (920)
T ss_dssp C--C----CGGGGGGGTT--------------TTTTSCEESCCSTHHHHHHHHHHT-TTCCCEECCCCGGGHHHHHHSSE
T ss_pred C--C----CCCHHHHHHH--------------HHHCEEEEEECHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHCCC
T ss_conf 6--5----5898999987--------------751819998379999999999996-79969998288100999985786
Q ss_pred CEEECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 4032486302341011011114--75578999873000011445779999887999999999999862077766613799
Q 003670 482 GIGISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQPAYNDWF 559 (804)
Q Consensus 482 GI~i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~~~~~~~~~~~s~~~~~~~~~ 559 (804)
||+|+ +....|+++||+++.+ |..+..+ +.+||++|+|+++++.|.++.|+.+....+++..+. +.+ ++..+
T Consensus 648 GIAmg-~gtd~ak~aADiVl~~~~~~~I~~a-i~~gR~~~~ni~k~i~~~l~~n~~~~~~~~~~~~~~---~~~-l~~~~ 721 (920)
T 1mhs_A 648 GIAVE-GSSDAARSAADIVFLAPGLGAIIDA-LKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAIL---NRS-LNIEL 721 (920)
T ss_dssp EEEET-TSCHHHHHSSSEEESSCCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---SCC-CCHHH
T ss_pred CCCCC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC-CCHHH
T ss_conf 74056-4339999846807767977789999-999999999999987889799999999999999999---616-87999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999997566698776156678846530053103500123323189899999999999999999999741255447999
Q 003670 560 LSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLFSWRRIFGWMFNGLYSAIIIFFFCKKAMEHQAFNDDG 639 (804)
Q Consensus 560 ~~~~n~~~~~lp~~~l~~~~~d~~~~~~~~~P~ly~~~~~~~~~~~~~~~~~~~~~~~~s~~if~~~~~~~~~~~~~~~g 639 (804)
++|.|++.+. |++++++++.+.+ +.|+-.. . ...+...+..|++.++..++.+.+.+... ...+
T Consensus 722 il~~~l~~d~-~~lal~~e~~~~~-----~~P~~~~----~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~ 785 (920)
T 1mhs_A 722 VVFIAIFADV-ATLAIAYDNAPYS-----QTPVKWN----L----PKLWGMSVLLGVVLAVGTWITVTTMYAQG--ENGG 785 (920)
T ss_dssp HHHHHHHHTT-HHHHCCCCCSGGG-----GSCCCCC----S----SSCSSCHHHHHHHHHHHHHHHHHHHTTTT--TTCC
T ss_pred HHHHHHHHHH-HHHHHCCCCCCCC-----CCCCCCH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 9999999877-7665135676434-----5887840----8----98999999999999999999999999835--4565
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCH
Q ss_conf 610235577799999999999999987421----0168899999999999999999851187787405899999970285
Q 003670 640 KTVGRDIFGATMYTCIVWVVNLQLALAISY----FTLIQHIFIWGSIALWYLFMLAYGAITPTHSTNAYKVFIEALAPAP 715 (804)
Q Consensus 640 ~~~~~~~~~t~~ft~~v~~vn~~~~l~~~~----~~~~~~~~i~~si~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 715 (804)
...+.....|++|+++++...+.++. +++ |....+..+++++++..++.+.+.+++ . |...++++
T Consensus 786 ~~~~~~~~~T~~f~~lv~~~~~~~~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------f~~~~l~~ 854 (920)
T 1mhs_A 786 IVQNFGNMDEVLFLQISLTENWLIFI-TRANGPFWSSIPSWQLSGAIFLVDILATCFTIWG-W---------FEHSDTSI 854 (920)
T ss_dssp SSSSSSSHHHHHHHHHHHHHHHHTTS-SSCSSSCSCCSCTHHHHHHHHHHHHHHHHHHSSS-S---------TTSCSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-H---------HCCCCCCH
T ss_conf 33206678999999999999999998-5036054037559999999999999999999765-6---------31678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8889999999998899999999998639
Q 003670 716 LFWLVTLFVVISTLIPYFAYSAIQMRFF 743 (804)
Q Consensus 716 ~~wl~~ll~~~~~ll~~~i~k~i~r~~~ 743 (804)
..|+.++++.++.++...+.|++.++..
T Consensus 855 ~~~~~~~~~~~~~~~~~e~~k~~~~~~~ 882 (920)
T 1mhs_A 855 VAVVRIWIFSFGIFCIMGGVYYILQDSV 882 (920)
T ss_dssp HTHHHHHHHTTHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999986048
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=545.97 Aligned_cols=532 Identities=17% Similarity=0.197 Sum_probs=360.0
Q ss_pred CCCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 78899914427982111039308870777513536079989999586418983278998542079986433468887544
Q 003670 4 EEADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEED 83 (804)
Q Consensus 4 ~~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (804)
+.+++++++|+++.+|+||++++||||||||||+|+|++.++.+. .++.+
T Consensus 303 r~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~--~~~~~---------------------------- 352 (885)
T 3b8c_A 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVE--VFCKG---------------------------- 352 (885)
T ss_dssp HHTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCCC--SSCSS----------------------------
T ss_pred HHHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEE--CCCCC----------------------------
T ss_conf 997198696895188897679989987998761685279987775--15899----------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 44698987786767033316688899990789999999854062151003899816883279219999999998596999
Q 003670 84 LTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFY 163 (804)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~ 163 (804)
....+++.+.++|+... .+||.|.|++.++.+..
T Consensus 353 -----------------------------~~~~~ll~~aa~~~~~~-------------~~~p~~~Al~~~~~~~~---- 386 (885)
T 3b8c_A 353 -----------------------------VEKDQVLLFAAMASRVE-------------NQDAIDAAMVGMLADPK---- 386 (885)
T ss_dssp -----------------------------TTHHHHHHHHHHHCCSS-------------SCCSHHHHHHHTTCCTT----
T ss_pred -----------------------------CCHHHHHHHHHHHHCCC-------------CCCCHHHHHHHHHHCHH----
T ss_conf -----------------------------99999999999972788-------------99915899999864636----
Q ss_pred EECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 64287579984488776530178889575369899953899998289909999828215757886206964089999999
Q 003670 164 QRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHV 243 (804)
Q Consensus 164 ~r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l 243 (804)
. .+..|+++..+||+|.||||+++++..+|+..+++||||+.|+++|+.. .+.++.+.+++
T Consensus 387 ------------~------~~~~~~~~~~~pF~s~~k~~sv~~~~~~g~~~~~~KGa~e~il~~c~~~-~~~~~~~~~~~ 447 (885)
T 3b8c_A 387 ------------E------ARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKAS-NDLSKKVLSII 447 (885)
T ss_dssp ------------C------CCCSSCCBCCCCCCTTTCCCCCBBCSSSSCBCBCCCCSGGGTSSSSCCC-STTTTTHHHHH
T ss_pred ------------H------HHHCCCEEECCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf ------------5------7624832201357852256899998048968999948899999764586-44579999999
Q ss_pred HHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99985356588778870799899999999999731100238998999999641055476777420355689099999999
Q 003670 244 NKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLA 323 (804)
Q Consensus 244 ~~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~L~ 323 (804)
++++.+|+|++++|+|++++++ .+..|+|++++|+++++||+|++++++|+.|+
T Consensus 448 ~~~a~~G~rvl~vA~~~~~~~~--------------------------~~~~e~~l~~lGli~i~Dp~R~~a~~aI~~l~ 501 (885)
T 3b8c_A 448 DKYAERGLRSLAVARQVVPEKT--------------------------KESPGAPWEFVGLLPLFDPPRHDSAETIRRAL 501 (885)
T ss_dssp HHHTTTTCEEEEECCBCCCSSS--------------------------SSCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEEEECCCCCC--------------------------CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 9998579869999994466433--------------------------11135675799999960666120899999999
Q ss_pred HCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64991999918877559999988594458971799905662456753110048998986666788862101112247999
Q 003670 324 QAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGS 403 (804)
Q Consensus 324 ~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (804)
++||++||+|||+..||.++|+++|+..+.. +..
T Consensus 502 ~aGI~v~MiTGD~~~tA~~iA~~lGi~~~~~-----~~~----------------------------------------- 535 (885)
T 3b8c_A 502 NLGVNVKMITGDQLAIGKETGRRLGMGTNMY-----PSS----------------------------------------- 535 (885)
T ss_dssp HTTCCCEEEESSCHHHHTHHHHTTTCTTCCS-----TTS-----------------------------------------
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHCCCCCCC-----CCC-----------------------------------------
T ss_conf 7699689993998699999999809764667-----751-----------------------------------------
Q ss_pred CCCEEEEEECHHHHHHHHH-HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCC
Q ss_conf 9871899905024686047-789999999721791099819945499999998724898599963896784554305824
Q 003670 404 SEAFALIIDGKSLTYALED-DIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIG 482 (804)
Q Consensus 404 ~~~~~lii~G~~l~~~l~~-~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~AdvG 482 (804)
++.|..++..+.+ .+. ++.. +..+|+|++|+||..+|+.+|+ .|+.|+|+|||.||+|||++||+|
T Consensus 536 ------~l~g~~~~~~~~~~~l~----~~~~--~~~v~arv~P~~K~~iV~~lq~-~g~~Vam~GDGvNDapaLk~AdvG 602 (885)
T 3b8c_A 536 ------ALLGTHKDANLASIPVE----ELIE--KADGFAGVFPEHKYEIVKKLQE-RKHIVGMTGDGVNDAPALKKADIG 602 (885)
T ss_dssp ------SCCBGGGGTTSCCSCHH----HHHH--TSCCEECCCHHHHHHHHHHHHH-TTCCCCBCCCSSTTHHHHHHSSSC
T ss_pred ------EEECCCCCCCCCHHHHH----HHHH--HCCEEEEECHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCEE
T ss_conf ------44555312224635799----9986--3868988789999999999997-799699975981229999869975
Q ss_pred EEECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 032486302341011011114--755789998730000114457799998879999999999998620777666137999
Q 003670 483 IGISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLSVFLYEAYTTFSGQPAYNDWFL 560 (804)
Q Consensus 483 I~i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~~~~~~~~~~~s~~~~~~~~~~ 560 (804)
|+|+ +....|+++||+++.+ |..+..+ +.+||.+|+|+++.+.|.+..|+...+..++..+ ++. .+++++++
T Consensus 603 IAmg-~gtd~ak~aADivl~~~~~~~I~~a-i~~gR~~~~ni~~~i~~~l~~n~~~~~~~~~~~~--~~~--~~l~p~~i 676 (885)
T 3b8c_A 603 IAVA-DATDAARGASDIVLTEPGLSVIISA-VLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIAL--IWE--FDFSAFMV 676 (885)
T ss_dssp CCCS-SSHHHHGGGCSSCCSSCSHHHHTHH-HHTHHHHHHHHHHHHHHHHHHTTTTTSTTHHHHS--SCS--SCSCHHHH
T ss_pred EEEC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC--CCCCHHHH
T ss_conf 9957-7129999843401335766689999-9999999999999999999999999999999997--038--67588999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 99999975666987761566788465300531035001233231898999999999999999999997412554479-99
Q 003670 561 SLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLFSWRRIFGWMFNGLYSAIIIFFFCKKAMEHQAFND-DG 639 (804)
Q Consensus 561 ~~~n~~~~~lp~~~l~~~~~d~~~~~~~~~P~ly~~~~~~~~~~~~~~~~~~~~~~~~s~~if~~~~~~~~~~~~~~-~g 639 (804)
+|+|++.+..+ ++++....++ |+ .++...+ ...+..++..|++++++.++++++.+....+.. .|
T Consensus 677 l~i~l~~d~~~-l~l~~~~~~~--------~~----~p~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (885)
T 3b8c_A 677 LIIAILNDGTI-MTISKDRVKP--------SP----TPDSWKL-KEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFG 742 (885)
T ss_dssp HHHHHHHHTTT-CCCCCCCCCC--------SS----CCCSTTT-TTTTTTHHHHHSSTHHHHTTSSSCTTTTTTTTCCCC
T ss_pred HHHHHHHHHHH-HHHCCCCCCC--------CC----CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999987778-7404654675--------45----8730358-999999999999999999999999997376522357
Q ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 6---10235577799999999999999987421--01688999---9999999999999985118778740589999997
Q 003670 640 K---TVGRDIFGATMYTCIVWVVNLQLALAISY--FTLIQHIF---IWGSIALWYLFMLAYGAITPTHSTNAYKVFIEAL 711 (804)
Q Consensus 640 ~---~~~~~~~~t~~ft~~v~~vn~~~~l~~~~--~~~~~~~~---i~~si~~~~i~~~i~~~i~~~~~~~~~~~~~~~~ 711 (804)
. ........+++|...++...+ ..+.+++ |.|+.+.. ++..++...+.+++..+.+ . .++...
T Consensus 743 ~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~Rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~ 813 (885)
T 3b8c_A 743 VRSIRDNNHELMGAVYLQVSIISQA-LIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYAN----W----EFAKIR 813 (885)
T ss_dssp SSCCGGGTHHHHTTTTTTTSSTTGG-GTTCSSSCTTTSTTSTTTTTSGGGSSTTTTTTSSSSSCC----C----CSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC----C----CCCCCC
T ss_conf 5411022999999999999999999-999764588870118649999999999999999998602----2----103137
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 028588899999999988999999999986399
Q 003670 712 APAPLFWLVTLFVVISTLIPYFAYSAIQMRFFP 744 (804)
Q Consensus 712 ~~~~~~wl~~ll~~~~~ll~~~i~k~i~r~~~P 744 (804)
+.++..|+.+++..++.+++..+.|++.|+...
T Consensus 814 ~l~~~~~~~~~~~~~~~~~~~e~~k~~~~~~~~ 846 (885)
T 3b8c_A 814 GIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILS 846 (885)
T ss_dssp CCTTTTHHHHHHHTGGGTHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 760999999999999999999999999997620
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=348.22 Aligned_cols=293 Identities=23% Similarity=0.294 Sum_probs=235.4
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++.+|+||+|++||||||||||+|+|++.++...+.. +
T Consensus 401 ~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~------~-------------------------- 448 (736)
T 3rfu_A 401 GAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFV------E-------------------------- 448 (736)
T ss_dssp HHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEEESSSC------H--------------------------
T ss_pred HHHCCEEECHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCC------H--------------------------
T ss_conf 75151332337899986279999981898875895279999834887------7--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 46989877867670333166888999907899999998540621510038998168832792199999999985969996
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFYQ 164 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~ 164 (804)
.+++...+.+ ++.++||.+.|+++++++.|+.+.
T Consensus 449 -------------------------------~~~l~~aa~l--------------e~~s~hPla~Aiv~~a~~~~~~~~- 482 (736)
T 3rfu_A 449 -------------------------------DNALALAAAL--------------EHQSEHPLANAIVHAAKEKGLSLG- 482 (736)
T ss_dssp -------------------------------HHHHHHHHHH--------------HHSSCCHHHHHHHHHHHTTCCCCC-
T ss_pred -------------------------------HHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHCCCCCC-
T ss_conf -------------------------------8999999998--------------622899289999999996599866-
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42875799844887765301788895753698999538999982899099998282157578862069640899999999
Q 003670 165 RTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVN 244 (804)
Q Consensus 165 r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~ 244 (804)
...+|++.+++.. ... .+|+ .+.+|+++.+.+... ..+...+.++
T Consensus 483 --------------------------~~~~f~~~~g~gv-~~~-~~g~--~~~~G~~~~~~~~~~-----~~~~~~~~~~ 527 (736)
T 3rfu_A 483 --------------------------SVEAFEAPTGKGV-VGQ-VDGH--HVAIGNARLMQEHGG-----DNAPLFEKAD 527 (736)
T ss_dssp --------------------------CCSCCCCCTTTEE-EEC-SSSS--CEEEESHHHHHHHCC-----CCHHHHHHHH
T ss_pred --------------------------CCCCCCCCCCCEE-EEE-ECCE--EEEECCHHHHHHCCC-----CHHHHHHHHH
T ss_conf --------------------------7543202488658-999-9998--999738999987399-----7167899999
Q ss_pred HHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99853565887788707998999999999997311002389989999996410554767774203556890999999996
Q 003670 245 KYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLAQ 324 (804)
Q Consensus 245 ~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~L~~ 324 (804)
+++.+|+|++.+|+ |.+++|+++++|++|++++++|+.|++
T Consensus 528 ~~~~~G~~vl~va~---------------------------------------d~~~~G~i~i~D~i~~~~~~aI~~L~~ 568 (736)
T 3rfu_A 528 ELRGKGASVMFMAV---------------------------------------DGKTVALLVVEDPIKSSTPETILELQQ 568 (736)
T ss_dssp HHHHTTCEEEEEEE---------------------------------------TTEEEEEEEEECCBCSSHHHHHHHHHH
T ss_pred HHHHCCCEEEEEEE---------------------------------------CCEEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99856986999987---------------------------------------998999998503220309999999998
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 49919999188775599999885944589717999056624567531100489989866667888621011122479999
Q 003670 325 AGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSS 404 (804)
Q Consensus 325 aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (804)
+||+++|+|||+..+|..+++++|+..
T Consensus 569 ~Gi~v~mlTGd~~~~a~~ia~~lgi~~----------------------------------------------------- 595 (736)
T 3rfu_A 569 SGIEIVMLTGDSKRTAEAVAGTLGIKK----------------------------------------------------- 595 (736)
T ss_dssp HTCEEEEECSSCHHHHHHHHHHHTCCC-----------------------------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCE-----------------------------------------------------
T ss_conf 799499987989899999999859987-----------------------------------------------------
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCEE
Q ss_conf 87189990502468604778999999972179109981994549999999872489859996389678455430582403
Q 003670 405 EAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIG 484 (804)
Q Consensus 405 ~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~AdvGI~ 484 (804)
++++++|++|..+++.+++ .++.|+|+|||.||++||++||+||+
T Consensus 596 ----------------------------------v~a~~~P~~K~~~v~~l~~-~g~~V~~vGDG~ND~paL~~AdvGIA 640 (736)
T 3rfu_A 596 ----------------------------------VVAEIMPEDKSRIVSELKD-KGLIVAMAGDGVNDAPALAKADIGIA 640 (736)
T ss_dssp ----------------------------------EECSCCHHHHHHHHHHHHH-HSCCEEEEECSSTTHHHHHHSSEEEE
T ss_pred ----------------------------------EEEECCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCEEEE
T ss_conf ----------------------------------9970699999999999996-69989999898576999986997799
Q ss_pred ECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2486302341011011114--755789998730000114457799998879999999
Q 003670 485 ISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLS 539 (804)
Q Consensus 485 i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~ 539 (804)
|+ +....++.+||+++.+ +..+.+. +..||..++++++.+.|.|..|+..+.+
T Consensus 641 mg-~g~d~a~~~AD~vl~~~~~~~i~~a-i~~sr~t~~~i~qnl~~a~~yN~~~ipl 695 (736)
T 3rfu_A 641 MG-TGTDVAIESAGVTLLHGDLRGIAKA-RRLSESTMSNIRQNLFFAFIYNVLGVPL 695 (736)
T ss_dssp ES-SSCSHHHHHCSEEECSCCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47-8659999769999926987899999-9999999999999999999999999999
No 7
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=347.61 Aligned_cols=289 Identities=24% Similarity=0.279 Sum_probs=231.5
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++.+|+||++++||||||||||+|+|++.++...+..
T Consensus 385 ~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~--------------------------------- 431 (723)
T 3j09_A 385 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD--------------------------------- 431 (723)
T ss_dssp HHTTTCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESSSC---------------------------------
T ss_pred HHHCCEEEECHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCC---------------------------------
T ss_conf 99889389482899876249899984777552696279999807999---------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 46989877867670333166888999907899999998540621510038998168832792199999999985969996
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFYQ 164 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~ 164 (804)
..+++...+.+.. .++||++.|+++++++.|+.+..
T Consensus 432 ------------------------------~~~~l~~aa~~e~--------------~s~hP~~~Ai~~~a~~~~~~~~~ 467 (723)
T 3j09_A 432 ------------------------------ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGE 467 (723)
T ss_dssp ------------------------------HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCS
T ss_pred ------------------------------HHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHCCCCCCC
T ss_conf ------------------------------8999999999850--------------49995428999999854998578
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42875799844887765301788895753698999538999982899099998282157578862069640899999999
Q 003670 165 RTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVN 244 (804)
Q Consensus 165 r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~ 244 (804)
. ..++ +...+ .+.. ..+.+|+++.+.+ .+....+....+++
T Consensus 468 ~-------------------~~~~--------~~~g~-g~~~-------~~~~~g~~~~~~~----~~~~~~~~~~~~~~ 508 (723)
T 3j09_A 468 P-------------------EKVE--------VIAGE-GVVA-------DGILVGNKRLMED----FGVAVSNEVELALE 508 (723)
T ss_dssp C-------------------CCCE--------EETTT-EEEE-------TTEEEECHHHHHH----TTCCCCHHHHHHHH
T ss_pred C-------------------CCEE--------EECCC-CEEE-------EEEEECCHHHHHH----CCCCCCHHHHHHHH
T ss_conf 6-------------------4459--------96698-1699-------9999778999975----49986089999999
Q ss_pred HHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99853565887788707998999999999997311002389989999996410554767774203556890999999996
Q 003670 245 KYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLAQ 324 (804)
Q Consensus 245 ~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~L~~ 324 (804)
+++.+|+|++++|+ |++++|+++++|++|++++++|+.|++
T Consensus 509 ~~~~~g~~~~~va~---------------------------------------~~~~~G~i~i~D~~~~~~~~~i~~l~~ 549 (723)
T 3j09_A 509 KLEREAKTAVIVAR---------------------------------------NGRVEGIIAVSDTLKESAKPAVQELKR 549 (723)
T ss_dssp HHHTTTCEEEEEEE---------------------------------------TTEEEEEEEEECCSCTTHHHHHHHHHH
T ss_pred HHHHCCCEEEEEEE---------------------------------------CCEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99855982899978---------------------------------------999999996068752569999999997
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 49919999188775599999885944589717999056624567531100489989866667888621011122479999
Q 003670 325 AGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSS 404 (804)
Q Consensus 325 aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (804)
+||++||+|||+..+|..+++++|+.
T Consensus 550 ~Gi~v~~~TGd~~~~a~~ia~~lgi~------------------------------------------------------ 575 (723)
T 3j09_A 550 MGIKVGMITGDNWRSAEAISRELNLD------------------------------------------------------ 575 (723)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHTCS------------------------------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCC------------------------------------------------------
T ss_conf 79979999998989999999985993------------------------------------------------------
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCEE
Q ss_conf 87189990502468604778999999972179109981994549999999872489859996389678455430582403
Q 003670 405 EAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIG 484 (804)
Q Consensus 405 ~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~AdvGI~ 484 (804)
.++++++|+||..+++.+++ . +.|+|+|||.||++||+.||+||+
T Consensus 576 ---------------------------------~~~~~~~P~~K~~~v~~l~~-~-~~v~~vGDg~ND~~al~~A~vgia 620 (723)
T 3j09_A 576 ---------------------------------LVIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGIA 620 (723)
T ss_dssp ---------------------------------EEECSCCTTCHHHHHHHHTT-T-CCEEEEECSSTTHHHHHHSSEEEE
T ss_pred ---------------------------------EEECCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCEEEE
T ss_conf ---------------------------------89926899999999999834-9-939999898230999954998799
Q ss_pred ECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2486302341011011114--755789998730000114457799998879999999
Q 003670 485 ISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLS 539 (804)
Q Consensus 485 i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~ 539 (804)
|+ +....++.+||+++.+ ++.+..+ +.+||+.++++++.+.|.++.|+..+..
T Consensus 621 mg-~g~~~a~~~AD~vl~~~~~~~i~~~-i~~~r~~~~~i~~nl~~a~~~n~~~i~~ 675 (723)
T 3j09_A 621 VG-SGSDVAVESGDIVLIRDDLRDVVAA-IQLSRKTMSKIKQNIFWALIYNVILIPA 675 (723)
T ss_dssp CC-CCSCCSSCCSSEECSSCCTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EC-CCCHHHHHHCCEEEECCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67-8759999869999967998899999-9999999999999999999999999999
No 8
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=341.44 Aligned_cols=289 Identities=24% Similarity=0.279 Sum_probs=231.7
Q ss_pred CCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999144279821110393088707775135360799899995864189832789985420799864334688875444
Q 003670 5 EADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEEDL 84 (804)
Q Consensus 5 ~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (804)
..++++++|+++.+|+||++++||||||||||+|+|++.++...+..
T Consensus 307 ~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~--------------------------------- 353 (645)
T 3j08_A 307 GAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD--------------------------------- 353 (645)
T ss_dssp HHTTCCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESSSC---------------------------------
T ss_pred HHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCC---------------------------------
T ss_conf 99779376681699986279999986866655897079999817999---------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 46989877867670333166888999907899999998540621510038998168832792199999999985969996
Q 003670 85 TESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFYQ 164 (804)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~ 164 (804)
..++++..+.|+. .++||++.|+++++++.|+....
T Consensus 354 ------------------------------~~~~l~~aa~~e~--------------~s~hPla~Aiv~~a~~~g~~~~~ 389 (645)
T 3j08_A 354 ------------------------------ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGE 389 (645)
T ss_dssp ------------------------------HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCS
T ss_pred ------------------------------HHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ------------------------------7999999999751--------------58874679999999965998678
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42875799844887765301788895753698999538999982899099998282157578862069640899999999
Q 003670 165 RTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVN 244 (804)
Q Consensus 165 r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~ 244 (804)
. ..++ +...+. +.. . .+.+|+++.+.+ .+....+....+++
T Consensus 390 ~-------------------~~~~--------~~~g~g-~~~----~---~v~~g~~~~~~~----~~~~~~~~~~~~~~ 430 (645)
T 3j08_A 390 P-------------------EKVE--------VIAGEG-VVA----D---GILVGNKRLMED----FGVAVSNEVELALE 430 (645)
T ss_dssp C-------------------CCCE--------EETTTE-EEE----T---TEEEECHHHHHH----TTCCCCHHHHHHHH
T ss_pred C-------------------CCEE--------EECCCC-EEE----E---EEEECCHHHHHH----CCCCCCHHHHHHHH
T ss_conf 6-------------------5359--------965884-699----9---999887999975----49875188999999
Q ss_pred HHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99853565887788707998999999999997311002389989999996410554767774203556890999999996
Q 003670 245 KYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLAQ 324 (804)
Q Consensus 245 ~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~L~~ 324 (804)
+++.+|+|++++|+ |++++|+++++|++|++++++|+.|++
T Consensus 431 ~~~~~g~~~l~va~---------------------------------------~~~~~G~i~~~D~l~~~~~~~i~~L~~ 471 (645)
T 3j08_A 431 KLEREAKTAVIVAR---------------------------------------NGRVEGIIAVSDTLKESAKPAVQELKR 471 (645)
T ss_dssp HHHTTTCCCEEEEE---------------------------------------TTEEEEEEEEECCCTTTHHHHHHHHHH
T ss_pred HHHHCCCEEEEEEE---------------------------------------CCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99855983899988---------------------------------------999999999348765679999999997
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 49919999188775599999885944589717999056624567531100489989866667888621011122479999
Q 003670 325 AGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSS 404 (804)
Q Consensus 325 aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (804)
+|+++||+|||+..+|..+++++|+.
T Consensus 472 ~Gi~v~~~TGd~~~~a~~ia~~lgi~------------------------------------------------------ 497 (645)
T 3j08_A 472 MGIKVGMITGDNWRSAEAISRELNLD------------------------------------------------------ 497 (645)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHTCS------------------------------------------------------
T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCC------------------------------------------------------
T ss_conf 79979999088879999999983997------------------------------------------------------
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCEE
Q ss_conf 87189990502468604778999999972179109981994549999999872489859996389678455430582403
Q 003670 405 EAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIG 484 (804)
Q Consensus 405 ~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~AdvGI~ 484 (804)
.++++++|++|..+++.+++ . +.|+|+|||.||++|++.||+||+
T Consensus 498 ---------------------------------~~~~~~~P~~K~~~v~~l~~-~-~~v~~vGDg~ND~~al~~A~vgia 542 (645)
T 3j08_A 498 ---------------------------------LVIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGIA 542 (645)
T ss_dssp ---------------------------------EEECSCCTTCHHHHHHHHTT-T-CCEEEEECSSSCHHHHHHSSEEEE
T ss_pred ---------------------------------EEEEECCHHHHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHCCEEEE
T ss_conf ---------------------------------89983787768999999860-9-959999697768999975998899
Q ss_pred ECCCCHHHHHCCCCHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2486302341011011114--755789998730000114457799998879999999
Q 003670 485 ISGVEGMQAVMSSDIAIAQ--FRYLERLLLVHGHWCYRRISSMICYFFYKNITFGLS 539 (804)
Q Consensus 485 i~g~~~~~a~~asD~~i~~--f~~l~~lll~~Gr~~~~~i~~~i~~~~~~ni~~~~~ 539 (804)
|+ +....++++||+++.+ ++.+..+ +.+||+.++++++.+.|.+..|+..+..
T Consensus 543 mg-~g~~~a~~~AD~vl~~~~~~~i~~~-i~~~r~~~~~i~~nl~~a~~~N~~~i~l 597 (645)
T 3j08_A 543 VG-SGSDVAVESGDIVLIRDDLRDVVAA-IQLSRKTMSKIKQNIFWALIYNVILIPA 597 (645)
T ss_dssp EC-CCSCCSSCCSSSEESSCCTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EC-CCCHHHHHHCCEEEECCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48-8759999869999936998899999-9999999999999999999999999999
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=211.39 Aligned_cols=138 Identities=23% Similarity=0.323 Sum_probs=115.0
Q ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHH
Q ss_conf 05547677742035568909999999964991999918877559999988594458971799905662456753110048
Q 003670 297 KDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKS 376 (804)
Q Consensus 297 ~dl~~lG~~~i~D~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~ 376 (804)
.+..+.|.+.+.|+++|++.++++.|++.|++++|+|||+..++..++..+|+..
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~------------------------- 177 (263)
T 2yj3_A 123 INGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQE------------------------- 177 (263)
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 99898666678886210111224799998718999050246860477899999997217910998199454999999987
Q 003670 377 EITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVK 456 (804)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk 456 (804)
+|..+.|+.|..+++.++
T Consensus 178 --------------------------------------------------------------~f~~~~p~~k~~~~~~l~ 195 (263)
T 2yj3_A 178 --------------------------------------------------------------YYSNLSPEDKVRIIEKLK 195 (263)
Q ss_pred CCCCCEEEEECCCCCCHHHHHHCCCCEEECCCCHHHHHCCCCHHC--CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 248985999638967845543058240324863023410110111--14755789998730000114457
Q 003670 457 SGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAI--AQFRYLERLLLVHGHWCYRRISS 524 (804)
Q Consensus 457 ~~~~~~vlaiGDG~ND~~ml~~AdvGI~i~g~~~~~a~~asD~~i--~~f~~l~~lll~~Gr~~~~~i~~ 524 (804)
. .+..++|||||.||++|++.|++||++. .....+...+|+++ .++..+..+ +..+|...++++.
T Consensus 196 ~-~~~~~~~VGD~~~D~~aa~~Agv~va~g-~~~~~~~~~ad~v~~~~~l~~l~~~-l~~~r~~~~~i~~ 262 (263)
T 2yj3_A 196 Q-NGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGL-IKNRKRLSNAIPS 262 (263)
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=1.00 E-value=1 Score=180.96 Aligned_cols=274 Identities=25% Similarity=0.310 Sum_probs=197.8
Q ss_pred CCCCCCCEECCCCCHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 78899914427982111039308870777513536079989999586418983278998542079986433468887544
Q 003670 4 EEADTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGLNTEED 83 (804)
Q Consensus 4 ~~~~~~~~~r~~~~~E~Lg~v~~i~sDKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (804)
...++++++|+++.+|.++++++|+||||||||.+.+.+..+...+. ++
T Consensus 12 ~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~------~~------------------------- 60 (287)
T 3a1c_A 12 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG------DE------------------------- 60 (287)
T ss_dssp --CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS------CH-------------------------
T ss_pred HHHHCCEEEECCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC------CH-------------------------
T ss_conf 99879979968089988536999999689988289779999981799------99-------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 44698987786767033316688899990789999999854062151003899816883279219999999998596999
Q 003670 84 LTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGKVMYEAESPDEAAFVIAARELGFEFY 163 (804)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~C~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~ 163 (804)
.+++..++. + +. .+.+|...|+..+++..|+...
T Consensus 61 --------------------------------~~~l~~~~~---~--e~---------~s~hp~~~a~~~~~~~~g~~~~ 94 (287)
T 3a1c_A 61 --------------------------------RELLRLAAI---A--ER---------RSEHPIAEAIVKKALEHGIELG 94 (287)
T ss_dssp --------------------------------HHHHHHHHH---H--TT---------TCCSHHHHHHHHHHHHTTCCCC
T ss_pred --------------------------------HHHHHHHHH---H--HH---------CCCCHHHHHHHHHHHHCCCCCC
T ss_conf --------------------------------999999999---7--52---------1799799999999986599855
Q ss_pred EECCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 64287579984488776530178889575369899953899998289909999828215757886206964089999999
Q 003670 164 QRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHV 243 (804)
Q Consensus 164 ~r~~~~i~~~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~~~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l 243 (804)
.. ..+.. +. .+ ++. . . .+.+|.++.+.+ .+....+......
T Consensus 95 ~~-------------------~~~~~---~~----G~--~~~--~--~---~~~~g~~~~~~~----~~~~~~~~~~~~~ 135 (287)
T 3a1c_A 95 EP-------------------EKVEV---IA----GE--GVV--A--D---GILVGNKRLMED----FGVAVSNEVELAL 135 (287)
T ss_dssp CC-------------------SCEEE---ET----TT--EEE--E--T---TEEEECHHHHHH----TTCCCCHHHHHHH
T ss_pred CC-------------------CCCEE---EC----CC--CEE--E--E---EEEECCHHHHHH----CCCCCCHHHHHHH
T ss_conf 55-------------------44146---24----88--728--8--9---999889999986----5997507789999
Q ss_pred HHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99985356588778870799899999999999731100238998999999641055476777420355689099999999
Q 003670 244 NKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDKLQNGVPDCIDKLA 323 (804)
Q Consensus 244 ~~~~~~Glr~l~~a~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~l~~~~~~ie~dl~~lG~~~i~D~lr~~v~~~I~~L~ 323 (804)
+.+...|.+++.+++ |..+++.+..+++++|++.++++.|+
T Consensus 136 ~~~~~~g~~~i~~~~---------------------------------------d~~~~~~~~~~~~~~~g~~~~l~~L~ 176 (287)
T 3a1c_A 136 EKLEREAKTAVIVAR---------------------------------------NGRVEGIIAVSDTLKESAKPAVQELK 176 (287)
T ss_dssp HHHHHTTCEEEEEEE---------------------------------------TTEEEEEEEEECCBCTTHHHHHHHHH
T ss_pred HHHHHCCCEEEEEEE---------------------------------------CCEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 998747975999999---------------------------------------99899999954536141899999999
Q ss_pred HCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 64991999918877559999988594458971799905662456753110048998986666788862101112247999
Q 003670 324 QAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGS 403 (804)
Q Consensus 324 ~aGIkv~ilTGD~~~ta~~ia~~~gl~~~~~~~i~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (804)
++|+++.++||+....+..+...+|+..
T Consensus 177 ~~g~~~~i~T~~~~~~~~~~l~~~gl~~---------------------------------------------------- 204 (287)
T 3a1c_A 177 RMGIKVGMITGDNWRSAEAISRELNLDL---------------------------------------------------- 204 (287)
T ss_dssp HTTCEEEEECSSCHHHHHHHHHHHTCSE----------------------------------------------------
T ss_pred HCCCEEEEEECCCHHHHHHHHHHHCCCE----------------------------------------------------
T ss_conf 7798599990989899999999809813----------------------------------------------------
Q ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCE
Q ss_conf 98718999050246860477899999997217910998199454999999987248985999638967845543058240
Q 003670 404 SEAFALIIDGKSLTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGI 483 (804)
Q Consensus 404 ~~~~~lii~G~~l~~~l~~~~~~~~~~l~~~~~~vi~~r~sp~qK~~iv~~lk~~~~~~vlaiGDG~ND~~ml~~AdvGI 483 (804)
.|..+.|..|...++.+.. . ..+++|||+.||+.|.+.|+++|
T Consensus 205 -----------------------------------~f~~i~~~~K~~~~~~l~~-~-~~~~~vGDs~~Di~~a~~ag~~v 247 (287)
T 3a1c_A 205 -----------------------------------VIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGI 247 (287)
T ss_dssp -----------------------------------EECSCCTTCHHHHHHHHTT-T-CCEEEEECTTTCHHHHHHSSEEE
T ss_pred -----------------------------------EEEECCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCEEE
T ss_conf -----------------------------------1100581779999999825-8-83999979777899999789529
Q ss_pred EECCCCHHHHHCCCCHHC--CHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 324863023410110111--1475578999873000011445
Q 003670 484 GISGVEGMQAVMSSDIAI--AQFRYLERLLLVHGHWCYRRIS 523 (804)
Q Consensus 484 ~i~g~~~~~a~~asD~~i--~~f~~l~~lll~~Gr~~~~~i~ 523 (804)
++... .......+|+++ .++..+..+ +..+|..+++++
T Consensus 248 ~~~~~-~~~~~~~ad~v~~~~~~~~l~~~-l~~~~~~~~~i~ 287 (287)
T 3a1c_A 248 AVGSG-SDVAVESGDIVLIRDDLRDVVAA-IQLSRKTMSKIK 287 (287)
T ss_dssp EECCC-SCCSSCCSSEEESSSCTHHHHHH-HHTTC-------
T ss_pred EECCC-CHHHHHHCCEEEECCCHHHHHHH-HHHHHHHHHHHC
T ss_conf 96788-77889629999947998999999-999999998509
Done!