Query         003671
Match_columns 804
No_of_seqs    337 out of 1910
Neff          7.0 
Searched_HMMs 29240
Date          Tue Mar 26 17:41:03 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/003671.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1722-1726//hhsearch_pdb/003671hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3lpp_A Sucrase-isomaltase; gly   1.0       1       1 1394.0  69.3  690   34-804    52-786 (898)
  2 3l4y_A Maltase-glucoamylase, i   1.0       1       1 1392.9  70.7  690   35-804    24-757 (875)
  3 3top_A Maltase-glucoamylase, i   1.0       1       1 1383.0  68.1  692   34-804    24-788 (908)
  4 3nsx_A Alpha-glucosidase; stru   1.0       1       1 1254.6  51.7  555  215-804    40-638 (666)
  5 4ba0_A Alpha-glucosidase, puta   1.0       1       1 1253.2  67.0  647   59-804    39-694 (817)
  6 2g3m_A Maltase, alpha-glucosid   1.0       1       1 1193.2  51.3  535  215-786    51-613 (693)
  7 2f2h_A Putative family 31 gluc   1.0       1       1 1188.1  68.4  663   54-803    18-690 (773)
  8 2xvl_A Alpha-xylosidase, putat   1.0       1       1 1162.9  62.7  674   60-804    48-896 (1020)
  9 2x2h_A Alpha-1,4-glucan lyase    1.0       1       1 1157.4  54.6  675   85-804    64-898 (1027)
 10 1zy9_A Alpha-galactosidase; TM   1.0       1       1  223.9  11.8  214  279-520   117-345 (564)

No 1  
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*
Probab=1.00  E-value=1  Score=1394.02  Aligned_cols=690  Identities=29%  Similarity=0.529  Sum_probs=618.8

Q ss_pred             CCCCCCCHHHHHHCCCC-------CCCCEEEEEEEEECCCCCEEEEEECC--CCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf             65579821322201799-------99861763017983798299997038--9999998513999999997997999993
Q 003671           34 FRNCNQTPFCKRARSRN-------PFSCSLIANQVTISDDGDISAKLVPK--NHDDHHQINPLILSLSIYQDGIVRLKID  104 (804)
Q Consensus        34 fk~C~qs~FC~R~R~~~-------~~~y~~~~~sv~~~~~~~~~a~l~~~--~~~~~~~~~~l~l~i~~~~~~~iRv~I~  104 (804)
                      -..|.+.|+|.......       +..|.|.+.+++.+ ..+++|.|...  ++.+|.++..|.|+|++.+++++||||.
T Consensus        52 ~~~C~~rgCcw~~~~~~~vP~Cf~p~~~gy~~~~~~~~-~~g~~~~l~~~~~~~~~g~di~~l~l~v~~~~~~~l~v~i~  130 (898)
T 3lpp_A           52 EGICAQRGCCWRPWNDSLIPWCFFVDNHGYNVQDMTTT-SIGVEAKLNRIPSPTLFGNDINSVLFTTQNQTPNRFRFKIT  130 (898)
T ss_dssp             HHHHHHHTCEECCCSSSSSCSEECTTSSCEEEEEEEEC-SSSEEEEEEECCCCCSSSCBCSEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEECC-CCCEEEEEEECCCCCCCCCCCHHEEEEEEEECCCEEEEEEC
T ss_conf             88996688874268888997336767888588667516-88679999877888778776301499999964987999865


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCEEEEEEECCCEEEEEEECCCEEEEEECCC
Q ss_conf             29999999883113665467743332100124554347889870475078769999843729999995699189996458
Q 003671          105 EDPTLNPRKQRFQVPDVVLPQFESKKLYLQRYSKETIDGEGDASVVYLSDGYEAVLRHDPFEVYVRYKGGNSRVLSLNSN  184 (804)
Q Consensus       105 e~~~~~~~~~Ry~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~PF~i~v~~~~~g~~v~~~n~~  184 (804)
                      +     +.++||+||..++.. ...    ..               ..+..++++++.+||+|+|.|+++|++++.. +.
T Consensus       131 d-----~~~~r~~vp~~~~~~-~~~----~~---------------~~~~~~~~~~~~~pf~~~v~r~~~g~vlf~t-~~  184 (898)
T 3lpp_A          131 D-----PNNRRYEVPHQYVKE-FTG----PT---------------VSDTLYDVKVAQNPFSIQVIRKSNGKTLFDT-SI  184 (898)
T ss_dssp             C-----TTSCCCCCCCSSSCC-CCC----CC---------------CSSCSEEEEEEETTEEEEEEETTTTEEEEEG-GG
T ss_pred             C-----CCCCCEECCHHCCCC-CCC----CC---------------CCCCCEEEEEECCCEEEEEEECCCCCEEEEC-CC
T ss_conf             8-----888707887102688-988----87---------------6786079999679818999988899487833-67


Q ss_pred             CCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             8600002556720111012444789999831699998659984340798789-888889989997789731642044345
Q 003671          185 GLFDFEEKNEGEEWEERFRGHTDTRPYGPQSISFDVSFYDSDYVYGIPERAT-SFALKPTRGPNVEESEPYRLFNLDVFE  263 (804)
Q Consensus       185 ~~~~~e~~~~~~~~~~~f~~~~d~~p~gp~~v~~~~~~~~~~~~yGlgE~~~-~l~l~~t~~~~~~~~~~y~l~n~D~~~  263 (804)
                      +.|.|++         +|             +.+...++ ++++||||||++ +|.|. +      ++++|+|||+|++.
T Consensus       185 ~~l~f~d---------q~-------------~~~~~~lp-~~~~YGlGE~~~~~~~l~-~------~~~~~~l~n~D~~~  234 (898)
T 3lpp_A          185 GPLVYSD---------QY-------------LQISARLP-SDYIYGIGEQVHKRFRHD-L------SWKTWPIFTRDQLP  234 (898)
T ss_dssp             SCCEEET---------TE-------------EEEEEECS-SSCEEEEESSCCSSSSCC-C------SSEEEEESCCCCCC
T ss_pred             CCEEEEE---------EE-------------EEEEEECC-CCCEECCCCCCCCCCEEC-C------CCCEEEEEECCCCC
T ss_conf             7558850---------18-------------99974368-763770456678764224-7------99789888668888


Q ss_pred             CCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECC
Q ss_conf             479999888652538996378-9863899996487439996388877665645678676421499721472899999469
Q 003671          264 YLHDSPFGLYGSIPFMISHGK-SGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGP  342 (804)
Q Consensus       264 y~~~~~~~lYg~iPf~~s~~~-~~~~~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~  342 (804)
                        ..+.++|||+|||||+++. +++++||||+|+++++|++..                ...++|++++|.+|+|||.||
T Consensus       235 --~~~~~~lY~~iPf~~~~~~~~~~~~Gvf~~Ns~~~~v~~~~----------------~~~~~~~~~gg~lD~y~~~Gp  296 (898)
T 3lpp_A          235 --GDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAMEIFIQP----------------TPIVTYRVTGGILDFYILLGD  296 (898)
T ss_dssp             --CSSCCCCSCCEEEEEEECSTTCCEEEEEECCCSCEEEEEET----------------TTEEEEEESSSCEEEEEEEES
T ss_pred             --CCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCC----------------CCEEEEEECCCCEEEEEEECC
T ss_conf             --87777755640279998648995799999679972687148----------------980899987885789999188


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHH
Q ss_conf             97899999998039999995220133234468899889999999610089993499810223699731257799999958
Q 003671          343 GPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPE  422 (804)
Q Consensus       343 tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~  422 (804)
                      +|++|+++|++|||+|+|||+||||||||||+|.++++|++++++|++++||||++|+|++||+++++||||+++||||+
T Consensus       297 tp~~Vi~~Y~~LtG~p~lpP~WalG~~qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~~dFt~D~~~FPdp~  376 (898)
T 3lpp_A          297 TPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYKSLDVVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAFNGLP  376 (898)
T ss_dssp             SHHHHHHHHHHHHCCCCCCCGGGGSCEECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTTCTTCCCTTTTTTHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECHHHCCCHH
T ss_conf             89999999999858887686100273143144799999999999998719980014764530047785017843587989


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCC-----CHHHHHHHHHCCCEEECCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999999769939997457214699-----91556998886844776999-97033220897522458887689999741
Q 003671          423 EMQRKLATKGRHMVTIVDPHIKRDD-----SYWLHNEATEKGYYVKDATK-RDYDGWCWPGSSSYLDMLNPEIRTWWGTK  496 (804)
Q Consensus       423 ~m~~~L~~~g~k~v~iidP~i~~~~-----~y~~~~~~~~~~~~vk~~~g-~~~~g~~WpG~~~~~Df~np~a~~ww~~~  496 (804)
                      +|+++||++|+|+++|++|+|+.++     +|.+|+++.++|+|||+++| +++.|.||||.++++||+||++++||.++
T Consensus       377 ~mv~~Lh~~G~k~vl~idP~I~~~~~~~~~~Y~~y~eg~~~g~fvk~~~G~~~~~g~~WpG~~~~~Dftnp~a~~ww~~~  456 (898)
T 3lpp_A          377 QFVQDLHDHGQKYVIILDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANE  456 (898)
T ss_dssp             HHHHHHHHTTCEEEEEECSCEECSCCTTSCCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999997799899996786336774444450889999868957988999950477725997036089998999999999


Q ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCC-------------------------CCCCCCCCCCCCCCCCHHHCHHHHHHH
Q ss_conf             0233445887862486227988878899-------------------------854788776578632000000347899
Q 003671          497 FSYENYVGSTPSLYIWNDMNEPSVFNGP-------------------------EVTMPRDALHLDRVEHRELHNAYGYYF  551 (804)
Q Consensus       497 ~~~~~~~g~~~~~~~W~DmnEps~f~g~-------------------------e~t~~~d~~h~~~~~~~~~hN~Yg~~~  551 (804)
                      ++.  +....+++|+|+|||||++|+..                         +.|+++|+.|++| +|+++||+||+++
T Consensus       457 ~~~--~~~~~giDg~W~DmnEp~~F~~g~~~~~~~~~l~~p~y~p~~~~~~l~~~t~~~d~~~~~g-~~~~~HNlYg~~~  533 (898)
T 3lpp_A          457 CSI--FHQEVQYDGLWIDMNEVSSFIQGSTKGCNVNKLNYPPFTPDILDKLMYSKTICMDAVQNWG-KQYDVHSLYGYSM  533 (898)
T ss_dssp             HHH--HHHHSCCSEEEECSTTTCCSSSBCTTCCCCSTTTSCSSCCSCGGGCTTTTSBCTTCEETTE-EHHHHGGGHHHHH
T ss_pred             HHH--HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHCCCCHHHHH
T ss_conf             999--8850795389990897433568753457654446888654412232234633455311588-5000023005889


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99869999870089999848850244798764400169986724799988999999713599831246689999999879
Q 003671          552 HMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTEL  631 (804)
Q Consensus       552 ~~at~~~l~~~~~~~~RpfilsRs~faGsqry~~~WtGDn~s~W~~L~~si~~~L~~~l~G~p~~g~DigGF~g~~~~EL  631 (804)
                      ++|++++++++.++ +||||||||+|+|+|||+++|+|||.++|++|+.+|+++|++||+|+||||+|||||.|++++||
T Consensus       534 ~~at~e~l~~~~~~-~RpfilsRS~~aGsqRy~~~WsGDn~s~W~~L~~sI~~~L~~~lsG~p~~g~DIGGF~g~~~~EL  612 (898)
T 3lpp_A          534 AIATEQAVQKVFPN-KRSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEEL  612 (898)
T ss_dssp             HHHHHHHHHHHSTT-BCCCEEESCCCTTGGGTCEEECCSCBSSHHHHHHHHHHHHHHHHTTCCSEECEETCSBSCCCHHH
T ss_pred             HHHHHHHHHHHCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99999999974368-88617971333777765301688655789999998999998764099724687767789998899


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             999862153232222247899998874335704--799999999999963499999999999749963245555799997
Q 003671          632 LVRWYQLGAYYPFFRAHAHHDTKRREPWLFGER--NTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDE  709 (804)
Q Consensus       632 ~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~--~~~~~r~~i~lRy~LlPY~Yt~~~~a~~~G~Pi~RPl~~~fP~D~  709 (804)
                      |+||+|+|||+||||+|++.++++||||.|+++  +.+++|++|++||+||||+||++++||.+|.|||||||++||+|+
T Consensus       613 ~~RW~Q~GaF~P~~R~H~~~~~~~~EPw~f~~~~~~~~~~r~~i~lRY~LlPYlYtl~~~a~~~G~Pv~RPL~~efP~D~  692 (898)
T 3lpp_A          613 CRRWMQLGAFYPFSRNHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPVLHEFYEDT  692 (898)
T ss_dssp             HHHHHHHHTTSSSCEECCCTTSCCCSGGGGCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCSEECTHHHHTTSG
T ss_pred             HHHHHHHHCCCCCCHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCH
T ss_conf             99998875278605011699998989846698578999999999999999999999999999729853331003899986


Q ss_pred             CCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEE-CCEEEEEECCCCCCCEEECCCCEEEECCCCC
Q ss_conf             434569536424953597455368716999929999268898992995-9989999928998548971991752015888
Q 003671          710 STFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVK-GGVTHKLEVSEESVPAFQRPGTIIPRRDRFR  788 (804)
Q Consensus       710 ~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~Wyd~~t~~~~~-gg~~~~v~~pl~~iPvfvR~GsIip~~~~~~  788 (804)
                      +++++++|||+|++||||||+++|+++|+|||| +|.|||+||++.+. ||+++++++|+++||||||+|+|||+++. +
T Consensus       693 ~~~~i~dQfm~G~~LLVAPV~~~g~~~~~VYLP-~g~Wyd~~tg~~~~~gg~~i~~~apld~iPvfvR~GsIiP~~~~-~  770 (898)
T 3lpp_A          693 NSWIEDTEFLWGPALLITPVLKQGADTVSAYIP-DAIWYDYESGAKRPWRKQRVDMYLPADKIGLHLRGGYIIPIQEP-D  770 (898)
T ss_dssp             GGGGCCSSEEETTTEEEECCCSTTCSEEEEEEC-SSCEEETTTCCBCSCCSEEEEEECCTTCCEEEEETTEEEEEECC-C
T ss_pred             HHHCCCCEEEECCCCEEEEECCCCCCEEEEECC-CCEEEECCCCCEEEECCEEEEEECCCCCCEEEEECCCEEEECCC-C
T ss_conf             775478728965871893321489707999999-98489788995995099899997786324399758817440474-4


Q ss_pred             CCHHHHCCCCCEEEEC
Q ss_conf             8411113998399979
Q 003671          789 RSSTQMVNDPYTLVRS  804 (804)
Q Consensus       789 ~st~~~~~~p~~l~va  804 (804)
                      +++.+++.+|++|+||
T Consensus       771 ~~t~~~~~~~~~L~v~  786 (898)
T 3lpp_A          771 VTTTASRKNPLGLIVA  786 (898)
T ss_dssp             SSHHHHTTSCEEEEEE
T ss_pred             CCHHHHHCCCEEEEEE
T ss_conf             4245652162689998


No 2  
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Probab=1.00  E-value=1  Score=1392.88  Aligned_cols=690  Identities=28%  Similarity=0.525  Sum_probs=616.3

Q ss_pred             CCCCCCHHHHHHCCCC-------CCCCEEEEEEE-EECCCCCEEEEEECC--CCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf             5579821322201799-------99861763017-983798299997038--9999998513999999997997999993
Q 003671           35 RNCNQTPFCKRARSRN-------PFSCSLIANQV-TISDDGDISAKLVPK--NHDDHHQINPLILSLSIYQDGIVRLKID  104 (804)
Q Consensus        35 k~C~qs~FC~R~R~~~-------~~~y~~~~~sv-~~~~~~~~~a~l~~~--~~~~~~~~~~l~l~i~~~~~~~iRv~I~  104 (804)
                      ..|.+.|+|.......       +..+.|.+.++ +.+ ..+++|+|...  ++.+|.++..|.|+|++.+++++||||.
T Consensus        24 ~~C~~rgCcw~~~~~~~vP~C~~p~~~gy~~~~~~~~~-~~g~~a~l~~~~~~~~~g~di~~l~l~v~~~~~~~l~~~i~  102 (875)
T 3l4y_A           24 ATCDQRGCCWNPQGAVSVPWCYYSKNHSYHVEGNLVNT-NAGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLT  102 (875)
T ss_dssp             HHHHHHTCEECTTSSTTCCSEECCTTSSEEEEEEEEEC-SSEEEEEEEECCCCCSSSCBCSEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECC-CCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEEC
T ss_conf             89966888821688889983347899996886635427-88689999767888777666310599999965976887865


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCEEEEEEECCCEEEEEEECCCEEEEEECCC
Q ss_conf             29999999883113665467743332100124554347889870475078769999843729999995699189996458
Q 003671          105 EDPTLNPRKQRFQVPDVVLPQFESKKLYLQRYSKETIDGEGDASVVYLSDGYEAVLRHDPFEVYVRYKGGNSRVLSLNSN  184 (804)
Q Consensus       105 e~~~~~~~~~Ry~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~PF~i~v~~~~~g~~v~~~n~~  184 (804)
                      |     ++++|||||..+++++...     .               ..+..+++.++.+||+|+|.|+++|++++.. +.
T Consensus       103 d-----~~~~r~~vp~~~~~~~~~~-----~---------------~~~~~~~~~~~~~pf~~~v~r~~~~~vlfdt-~~  156 (875)
T 3l4y_A          103 D-----QTNNRFEVPHEHVQSFSGN-----A---------------AASLTYQVEISRQPFSIKVTRRSNNRVLFDS-SI  156 (875)
T ss_dssp             E-----TTBCCCCCCCSSCCCCCSC-----C---------------CSSCSEEEEEEETTEEEEEEETTTCCEEEEG-GG
T ss_pred             C-----CCCCEEECCCCCCCCCCCC-----C---------------CCCCCEEEEEECCCEEEEEEECCCCEEEEEC-CC
T ss_conf             8-----8888078884357889888-----7---------------7787359999579837999987898187860-46


Q ss_pred             CCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             86000025567201110124447899998316999986599843407987898888899899977897316420443454
Q 003671          185 GLFDFEEKNEGEEWEERFRGHTDTRPYGPQSISFDVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEY  264 (804)
Q Consensus       185 ~~~~~e~~~~~~~~~~~f~~~~d~~p~gp~~v~~~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y  264 (804)
                      +.|.|++         +|             +.+...++ ++++||||||.+.+.++.++      +++++|||+|.+. 
T Consensus       157 ~~l~f~d---------q~-------------l~~~t~lp-~~~~yGlGE~~~~~~~~~~~------~~~~~~~n~D~~~-  206 (875)
T 3l4y_A          157 GPLLFAD---------QF-------------LQLSTRLP-STNVYGLGEHVHQQYRHDMN------WKTWPIFNRDTTP-  206 (875)
T ss_dssp             SCCEEET---------TE-------------EEEEEECS-CSCEEEEESSCCSSSSBCCS------SEEEEECCCCCCC-
T ss_pred             CCEEEEC---------CE-------------EEEEEECC-CCCEECCCCCCCCCCCCCCC------CCEEEEEECCCCC-
T ss_conf             7558862---------48-------------99999879-76434246666755401579------8588878547899-


Q ss_pred             CCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCC
Q ss_conf             79999888652538996378-98638999964874399963888776656456786764214997214728999994699
Q 003671          265 LHDSPFGLYGSIPFMISHGK-SGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPG  343 (804)
Q Consensus       265 ~~~~~~~lYg~iPf~~s~~~-~~~~~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~t  343 (804)
                       ..+.++|||+|||||+++. +++++||||+|+++++|++..                ...++|++++|.+|+|||.||+
T Consensus       207 -~~~~~~lY~~~Pf~~~~~~~~~~~~Gvf~~Ns~~~~v~~~~----------------~~~~~~~~~gg~lD~y~~~Gpt  269 (875)
T 3l4y_A          207 -NGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQP----------------APAITYRTIGGILDFYVFLGNT  269 (875)
T ss_dssp             -STTCCCCSCCEEEEEEECSTTCCEEEEEECCCSCEEEEEET----------------TTEEEEEESSSCEEEEEEEESS
T ss_pred             -CCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCC----------------CCEEEEEECCCCEEEEEEECCC
T ss_conf             -87777765511079998658996799999779863897368----------------9629999778848999980898


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHH
Q ss_conf             78999999980399999952201332344688998899999996100899934998102236997312577999999589
Q 003671          344 PKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEE  423 (804)
Q Consensus       344 p~~vi~~Y~~ltG~p~lpP~walG~~q~rw~y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~~  423 (804)
                      |++|+++|++|||+|+|||+||||||||||+|.++++|++++++|++++||||++|+||+||+++++||||+++||||++
T Consensus       270 p~~Vv~~Y~~ltG~p~lpP~WalG~~qsr~~Y~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~~~dFt~D~~~FPdp~~  349 (875)
T 3l4y_A          270 PEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSVDFKGFPE  349 (875)
T ss_dssp             HHHHHHHHHHHHCCCCCCCGGGGSEEECCSCCCSHHHHHHHHHHHHHTTCCCCEEEECGGGSBTTBTTCCCTTTTTTHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCCEEECHHHCCCHHH
T ss_conf             99999999998588887971012651333578999999999999886299986389766010577740038545889899


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCC----CHHHHHHHHHCCCEEECCCCCC-EEEEECCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             999999769939997457214699----9155699888684477699997-03322089752245888768999974102
Q 003671          424 MQRKLATKGRHMVTIVDPHIKRDD----SYWLHNEATEKGYYVKDATKRD-YDGWCWPGSSSYLDMLNPEIRTWWGTKFS  498 (804)
Q Consensus       424 m~~~L~~~g~k~v~iidP~i~~~~----~y~~~~~~~~~~~~vk~~~g~~-~~g~~WpG~~~~~Df~np~a~~ww~~~~~  498 (804)
                      |+++||++|+|+++|++|+|+.++    +|++|+++.++|+|||+++|.. +.|.||||.+++||||||+|++||.++++
T Consensus       350 mv~~Lh~~G~k~v~~idP~I~~~s~~~~~y~~y~eg~~~g~fvk~~dG~~~~~g~~WpG~~~~pDFtnP~a~~WW~~~~k  429 (875)
T 3l4y_A          350 FVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFE  429 (875)
T ss_dssp             HHHHHHHTTCEEEEEECSCEECCCCSSSCCHHHHHHHHHTCBCBCTTSSSBCCEEETTEEEECBCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999977998999967861457666656688999987992898889983248874589755729999899999999999


Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCC-------------------------CCCCCCCCCCCCCCCCHHHCHHHHHHHHH
Q ss_conf             33445887862486227988878899-------------------------85478877657863200000034789999
Q 003671          499 YENYVGSTPSLYIWNDMNEPSVFNGP-------------------------EVTMPRDALHLDRVEHRELHNAYGYYFHM  553 (804)
Q Consensus       499 ~~~~~g~~~~~~~W~DmnEps~f~g~-------------------------e~t~~~d~~h~~~~~~~~~hN~Yg~~~~~  553 (804)
                      .  +....+++|+|+|||||++|+..                         ..++++|+.|+.| +|+++||+||+++++
T Consensus       430 ~--~~~~~gidg~W~DmnEp~~f~~g~~~~c~~~~l~~ppy~p~~~d~~l~~~t~~~d~~~~~g-~h~~~HNlYg~~~~~  506 (875)
T 3l4y_A          430 L--FHNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWG-KQYDIHNLYGYSMAV  506 (875)
T ss_dssp             H--HHTTSCCSEEEECSTTTCCSSSBSTTCCCCSTTTSCSCCCSCGGGCTTTTSBCTTCEETTE-EHHHHGGGHHHHHHH
T ss_pred             H--HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC-CCHHHHHHHHHHHHH
T ss_conf             9--8740687689972898532577753457644345888654324442126754565011377-402344474899999


Q ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             86999987008999984885024479876440016998672479998899999971359983124668999999987999
Q 003671          554 ATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLV  633 (804)
Q Consensus       554 at~~~l~~~~~~~~RpfilsRs~faGsqry~~~WtGDn~s~W~~L~~si~~~L~~~l~G~p~~g~DigGF~g~~~~EL~~  633 (804)
                      |++++++++.+ ++||||||||+|+|+|||+++|+|||.++|++|+.+|+++|++||+|+||||+|||||+|++++|||+
T Consensus       507 at~e~l~~~~~-~kRpfilsRS~~aGsqry~~~WsGDn~s~W~~L~~sI~~~L~~~lsG~p~~g~DIGGF~g~~~~EL~~  585 (875)
T 3l4y_A          507 ATAEAAKTVFP-NKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCR  585 (875)
T ss_dssp             HHHHHHHHHST-TBCCCEEESSCCTTGGGTCEEECCSCBSSHHHHHHHHHHHHHHHHTTCCSEECEETCSBSCCCHHHHH
T ss_pred             HHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
T ss_conf             99999998447-98608995553377776564318850048889999899999988619884257747768999789999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             9862153232222247899998874335704--79999999999996349999999999974996324555579999743
Q 003671          634 RWYQLGAYYPFFRAHAHHDTKRREPWLFGER--NTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDEST  711 (804)
Q Consensus       634 RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~--~~~~~r~~i~lRy~LlPY~Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~  711 (804)
                      ||+|+|||+||||+|++.++++||||.|+++  +.+++|++|++||+||||+||++++||.+|.|||||||++||+|+++
T Consensus       586 RW~Q~GaF~P~~R~H~~~~~~~~EPw~fg~~~~v~~~~r~~i~lRY~LlPYlYtl~~~a~~~G~Pv~RPL~~efP~D~~~  665 (875)
T 3l4y_A          586 RWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYEDNST  665 (875)
T ss_dssp             HHHHHHTTSSSEEECCCTTSCCCSGGGGCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCSEECHHHHHTTCGGG
T ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHH
T ss_conf             99997405862661479998887970069856899999999999999899999999999974985244531589898667


Q ss_pred             CCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEE-CCEEEEEECCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             4569536424953597455368716999929999268898992995-998999992899854897199175201588884
Q 003671          712 FTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVK-GGVTHKLEVSEESVPAFQRPGTIIPRRDRFRRS  790 (804)
Q Consensus       712 ~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~Wyd~~t~~~~~-gg~~~~v~~pl~~iPvfvR~GsIip~~~~~~~s  790 (804)
                      +++++|||+|++||||||+++|+++|+|||| +|.|||+||++.+. +|+++++++||++||||||+|+|||++++ +++
T Consensus       666 ~~i~dQfm~G~~LLVAPV~~~g~~~~~vYLP-~g~Wyd~~tg~~~~~~g~~~~~~apld~iPvfvR~GsIiP~~~~-~~~  743 (875)
T 3l4y_A          666 WDVHQQFLWGPGLLITPVLDEGAEKVMAYVP-DAVWYDYETGSQVRWRKQKVEMELPGDKIGLHLRGGYIFPTQQP-NTT  743 (875)
T ss_dssp             TTCCSCEEETTTEEEECCCSTTCSEEEEEEC-SSCEEETTTCCBCSCCSEEEEEECCTTCCEEEEETTEEEEEECC-CSS
T ss_pred             HCCCCEEEECCCCEEEEECCCCCCEEEEECC-CCCEECCCCCEEEECCCEEEEEECCCCCCEEEEECCEEEECCCC-CCC
T ss_conf             4478608855870894311489715999939-98605789996996399899996367422189658847103675-542


Q ss_pred             HHHHCCCCCEEEEC
Q ss_conf             11113998399979
Q 003671          791 STQMVNDPYTLVRS  804 (804)
Q Consensus       791 t~~~~~~p~~l~va  804 (804)
                      +.+++.+|++|+||
T Consensus       744 t~~~~~~~~~l~v~  757 (875)
T 3l4y_A          744 TLASRKNPLGLIIA  757 (875)
T ss_dssp             HHHHTTSCEEEEEE
T ss_pred             HHHHHCCCEEEEEE
T ss_conf             24541262379999


No 3  
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*
Probab=1.00  E-value=1  Score=1383.04  Aligned_cols=692  Identities=27%  Similarity=0.510  Sum_probs=606.5

Q ss_pred             CCCCCCCHHHHHHCCCCCCCC------EEEEEEEEECCCCCEEEEEECC-----CCCCCCCCCEEEEEEEEEECCEEEEE
Q ss_conf             655798213222017999986------1763017983798299997038-----99999985139999999979979999
Q 003671           34 FRNCNQTPFCKRARSRNPFSC------SLIANQVTISDDGDISAKLVPK-----NHDDHHQINPLILSLSIYQDGIVRLK  102 (804)
Q Consensus        34 fk~C~qs~FC~R~R~~~~~~y------~~~~~sv~~~~~~~~~a~l~~~-----~~~~~~~~~~l~l~i~~~~~~~iRv~  102 (804)
                      =..|.|.|+|.........+|      .|.+.+++.+ ..+++|.|...     ++.++.++..|.|+|++.+++++|||
T Consensus        24 ~~~C~~rGCcw~~~~~~~~P~Cffp~~gY~~~~~~~~-~~g~~~~l~~~~~~~~~~~~~~di~~l~l~v~~~~~~~l~v~  102 (908)
T 3top_A           24 AENCTARGCIWEASNSSGVPFCYFVNDLYSVSDVQYN-SHGATADISLKSSVYANAFPSTPVNPLRLDVTYHKNEMLQFK  102 (908)
T ss_dssp             HHHHHTTTEEECCCSSTTCCSEEESSCSEEECCCEEC-SSEEEEEEEESCHHHHTTSSSCBCSSEEEEEEECSSSEEEEE
T ss_pred             HHHHHHCCCCCCCCCCCCCCEEECCCCCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCHHEEEEEEEECCCEEEEE
T ss_conf             8889668887116889999600526997377666534-775699811166655455789873006999999669879999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCEEEEEEECCCEEEEEEECCCEEEEEEC
Q ss_conf             93299999998831136654677433321001245543478898704750787699998437299999956991899964
Q 003671          103 IDEDPTLNPRKQRFQVPDVVLPQFESKKLYLQRYSKETIDGEGDASVVYLSDGYEAVLRHDPFEVYVRYKGGNSRVLSLN  182 (804)
Q Consensus       103 I~e~~~~~~~~~Ry~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~PF~i~v~~~~~g~~v~~~n  182 (804)
                      |.|     +.++|||||..+ ..+...     ..             ...+..+++.++.+||+|+|.|+++|++++.. 
T Consensus       103 i~d-----~~~~r~evp~~~-~~~~~~-----~~-------------~~~~~~~~~~~~~~pF~~~v~R~s~g~vlfdt-  157 (908)
T 3top_A          103 IYD-----PNKNRYEVPVPL-NIPSMP-----SS-------------TPEGQLYDVLIKKNPFGIEIRRKSTGTIIWDS-  157 (908)
T ss_dssp             EEC-----SSSCCCCCCCCC-CCCSSC-----CC-------------CTTTCCEEEEEETTTTEEEEEETTSCCEEEEC-
T ss_pred             EEC-----CCCCEEECCCCC-CCCCCC-----CC-------------CCCCCCEEEEEECCCCEEEEEECCCCCEEEEC-
T ss_conf             866-----888758888656-778888-----77-------------66786569999678848999988898388866-


Q ss_pred             CCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             58860000255672011101244478999983169999865998434079878988888998999778973164204434
Q 003671          183 SNGLFDFEEKNEGEEWEERFRGHTDTRPYGPQSISFDVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVF  262 (804)
Q Consensus       183 ~~~~~~~e~~~~~~~~~~~f~~~~d~~p~gp~~v~~~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~  262 (804)
                      +.+.|.|+         ++|             +.+...++ ++++||||||.+.+.+++.      .+.+|+|||+|..
T Consensus       158 ~~~~l~f~---------dq~-------------l~~st~lp-~~~~YGlGE~~~~~~r~~~------~~~~~~~~~~D~~  208 (908)
T 3top_A          158 QLLGFTFS---------DMF-------------IRISTRLP-SKYLYGFGETEHRSYRRDL------EWHTWGMFSRDQP  208 (908)
T ss_dssp             CSSCCEEE---------TTE-------------EEEEEECS-SSCEECCSSSCCSSSBCCC------SSEEEEESCCCCC
T ss_pred             CCCCEEEC---------CCE-------------EEEEEECC-CCCEECCCCCCCCCCCCCC------CCCEEEEEECCCC
T ss_conf             88880783---------767-------------99999768-4334504676774322446------7724520303789


Q ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECC
Q ss_conf             54799998886525389963789863899996487439996388877665645678676421499721472899999469
Q 003671          263 EYLHDSPFGLYGSIPFMISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGP  342 (804)
Q Consensus       263 ~y~~~~~~~lYg~iPf~~s~~~~~~~~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~  342 (804)
                      .   ....+|||+|||||+++.+++++||||+|+++++|++..                ...++|++++|+||+|||.||
T Consensus       209 ~---~~~~nlYgs~Pfyl~~~~~~~~~Gvf~~Ns~~~dv~~~~----------------~~~~~~~~~gG~lD~y~~~Gp  269 (908)
T 3top_A          209 P---GYKKNSYGVHPYYMGLEEDGSAHGVLLLNSNAMDVTFQP----------------LPALTYRTTGGVLDFYVFLGP  269 (908)
T ss_dssp             S---CTTCCCSCCCCEEEEECSSSCEEEEEECCCSSEEEEEET----------------TTEEEEEESSSCEEEEEECCS
T ss_pred             C---CCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEECC----------------CCEEEEEECCCCEEEEEECCC
T ss_conf             8---777776432326999847980899999769987677348----------------982999986895889996699


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHH
Q ss_conf             97899999998039999995220133234468899889999999610089993499810223699731257799999958
Q 003671          343 GPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPE  422 (804)
Q Consensus       343 tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~  422 (804)
                      +|++|++||++|||+|+|||+||||||||||+|.++++|++|+++|++++||||+||+||+||+++++||||+ +||||+
T Consensus       270 tp~~Vi~qYt~LtG~p~mpP~WalGy~qsR~~Y~~~~ev~~vv~~~r~~~IPlDvi~~Didym~~~~~FT~d~-~FPdp~  348 (908)
T 3top_A          270 TPELVTQQYTELIGRPVMVPYWSLGFQLCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTLSP-KFAGFP  348 (908)
T ss_dssp             SHHHHHHHHHHHHCCCCCCCGGGGSCEECCTTCCSHHHHHHHHHHHHHHTCCCCEEEECGGGSSTTCTTCCCG-GGTTHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC-CCCCHH
T ss_conf             9999999999976899889723222030255689999999999988873998215886052005644064587-889989


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCC--CHHHHHHHHHCCCEEECCC-CCCEEEEECCC---------------------C
Q ss_conf             9999999769939997457214699--9155699888684477699-99703322089---------------------7
Q 003671          423 EMQRKLATKGRHMVTIVDPHIKRDD--SYWLHNEATEKGYYVKDAT-KRDYDGWCWPG---------------------S  478 (804)
Q Consensus       423 ~m~~~L~~~g~k~v~iidP~i~~~~--~y~~~~~~~~~~~~vk~~~-g~~~~g~~WpG---------------------~  478 (804)
                      +|+++||++|+|+|+||||+|+.++  .|++|+++.++|+|||+++ |+++.|.||||                     .
T Consensus       349 ~mv~~Lh~~G~k~v~iidP~I~~~~~~~Y~~y~eg~~~g~fvk~~~gg~~~~g~vWpG~~~v~~d~~~~~~~~~~~~~~~  428 (908)
T 3top_A          349 ALINRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIKYPNDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAY  428 (908)
T ss_dssp             HHHHHHHHHTCEEEEEECSCEECCCCSCCHHHHHHHHHTCBCBCSSSCCBCEEEEEEECSSCCCCTTSCHHHHHHHTEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999997798799996776257877788889988768968973898951267526897554533322222222235576


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCC-----CCCCCCCCEEEECCCCCCCCCCCCC---------------------------
Q ss_conf             52245888768999974102334-----4588786248622798887889985---------------------------
Q 003671          479 SSYLDMLNPEIRTWWGTKFSYEN-----YVGSTPSLYIWNDMNEPSVFNGPEV---------------------------  526 (804)
Q Consensus       479 ~~~~Df~np~a~~ww~~~~~~~~-----~~g~~~~~~~W~DmnEps~f~g~e~---------------------------  526 (804)
                      ++||||+||+|++||.++++...     ..+..+++++|+|||||++|+.++.                           
T Consensus       429 ~~fpDftnp~ar~WW~~~~~~~~~~~~~~~~~~gvdg~W~DmnEPs~F~~g~~~~~~~~~~l~~ppy~p~~~~~~~~l~~  508 (908)
T 3top_A          429 VAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSS  508 (908)
T ss_dssp             EECBCTTSHHHHHHHHHHHHHHHSCSSCGGGCCCCSEEEECSTTTCCSSSSSSSSCCCCTTTSSCSSCCSCTTGGGTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             24646899899999999999987522343446786589980688654556532346764334588643333345666433


Q ss_pred             -CCCCCCCCC--C--CCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             -478877657--8--63200000034789999869999870089999848850244798764400169986724799988
Q 003671          527 -TMPRDALHL--D--RVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVS  601 (804)
Q Consensus       527 -t~~~d~~h~--~--~~~~~~~hN~Yg~~~~~at~~~l~~~~~~~~RpfilsRs~faGsqry~~~WtGDn~s~W~~L~~s  601 (804)
                       |+++++.|+  +  +++|+++||+||+++++|+++|++++. + +||||||||+|+|+|||+++|+|||.++|++|+.+
T Consensus       509 ~t~~~~~~~~~~dG~~~~h~~vHNlYg~~~~~atye~l~~~~-~-~RpfilsRS~~aGsqry~~~WtGDn~s~W~~L~~s  586 (908)
T 3top_A          509 KTLCMESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAVQEVT-G-QRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLKKS  586 (908)
T ss_dssp             TSCCTTCEEECSSSCEEEHHHHGGGHHHHHHHHHHHHHHHHH-S-SCCCEEESSCCTTGGGTCEEECCCCBSSTHHHHHH
T ss_pred             CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-C-CCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHH
T ss_conf             643455415415887420333331258999999999999612-8-98528984222677775660597524208999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999971359983124668999999987999986215323222224789999887433570479999999999996349
Q 003671          602 VPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLP  681 (804)
Q Consensus       602 i~~~L~~~l~G~p~~g~DigGF~g~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~i~lRy~LlP  681 (804)
                      |+++|++||+|+||||+|||||+|++++|||+||+|+|||+||||+|++.++++||||.|++++.+++|+++++||+|||
T Consensus       587 i~~~L~~~lsG~p~~g~DIgGF~g~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~i~lRy~LlP  666 (908)
T 3top_A          587 IIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFVNISRTVLQTRYTLLP  666 (908)
T ss_dssp             HHHHHHHHHHTCCSEECBTTCSBSCCCHHHHHHHHHHHTTSSSCEECCCSSSCCCSGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999886209862357637648999889999998872277003614799987768724798999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEEC-CE
Q ss_conf             99999999997499632455557999974345695364249535974553687169999299992688989929959-98
Q 003671          682 YFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKG-GV  760 (804)
Q Consensus       682 Y~Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~Wyd~~t~~~~~g-g~  760 (804)
                      |+||++++||.+|.|||||||++||+|++++++++|||+|++||||||+++|+++|+|||| +|.|||+||++.+.| |+
T Consensus       667 YlYtl~~~a~~~G~Pv~RPL~~efP~D~~~~~i~~Qfm~G~~lLVaPV~~~g~~~~~vYLP-~g~Wyd~~tg~~~~g~g~  745 (908)
T 3top_A          667 YLYTLMHKAHTEGVTVVRPLLHEFVSDQVTWDIDSQFLLGPAFLVSPVLERNARNVTAYFP-RARWYDYYTGVDINARGE  745 (908)
T ss_dssp             HHHHHHHHHHHHCCCSEECGGGTCTTCTTTTTCCSSEEETTTEEEECCCSSSCCEEEEEEC-SSCEEETTTCCBCCCSSE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEECCCEEEEEECCCCCEEEEEECC-CCEEEECCCCCEEECCCE
T ss_conf             9999999999639873045204688986785478637855871895312489607999869-973476699858965997


Q ss_pred             EEEEECCCCCCCEEECCCCEEEECCCCCCCHHHHCCCCCEEEEC
Q ss_conf             99999289985489719917520158888411113998399979
Q 003671          761 THKLEVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVRS  804 (804)
Q Consensus       761 ~~~v~~pl~~iPvfvR~GsIip~~~~~~~st~~~~~~p~~l~va  804 (804)
                      ++++++||++||||+|+|+|||++++ +++|.+++.+|++|+||
T Consensus       746 ~~~~~apl~~iPvfvR~GsIiP~~~~-~~~t~~~~~~~~~l~v~  788 (908)
T 3top_A          746 WKTLPAPLDHINLHVRGGYILPWQEP-ALNTHLSRQKFMGFKIA  788 (908)
T ss_dssp             EEEEECCTTCCEEEEETEEEEEEECC-CSSHHHHTTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCEEEEECCC-CCCHHHHCCCCEEEEEE
T ss_conf             99995586413699989868200474-44313315897799999


No 4  
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=1.00  E-value=1  Score=1254.62  Aligned_cols=555  Identities=28%  Similarity=0.557  Sum_probs=513.3

Q ss_pred             CEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             16999986599843407987898888899899977897316420443454799998886525389963789863899996
Q 003671          215 SISFDVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYGSIPFMISHGKSGRTSGFFWL  294 (804)
Q Consensus       215 ~v~~~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y~~~~~~~lYg~iPf~~s~~~~~~~~Gvf~~  294 (804)
                      .+.++++++++|++||||||++.|+++         +++|+|||+|.+++. .+.++|||+||||++++  ++++||||+
T Consensus        40 ~~~~~~~l~~~e~~YGlGE~~~~l~~~---------g~~~~l~n~D~~~~~-~~~~~lY~~~Pf~~~~~--~~~~Gvf~~  107 (666)
T 3nsx_A           40 GFAFTYIMDEDDIVYGLGESNRGINKR---------GYCYISNCTDDPIHT-EDKRSLYGAHNFIIVSG--KTTFGLFFD  107 (666)
T ss_dssp             SEEEEEECCTTCEEEECSSCSSCSSCT---------TEEEEECCCCCSSCC-TTCCCCSEECCEEEEES--SSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEECCCCCCCCCCC---------CCEEEECCCCCCCCC-CCCHHHHHCCEEEEEEC--CCCEEEEEE
T ss_conf             637996248666575046455564456---------517864168998765-65021010020799976--733468982


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             48743999638887766564567867642149972147289999946997899999998039999995220133234468
Q 003671          295 NAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWN  374 (804)
Q Consensus       295 ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~  374 (804)
                      |+++++||++.+              ....++|++++|.+|+|||.||+|++|+++|++|||+|+|||+||||||||||+
T Consensus       108 n~~~~~~d~~~~--------------~~~~~~~~~~~g~lD~y~~~G~~p~~v~~~Y~~ltG~~~lpP~walG~~qsr~~  173 (666)
T 3nsx_A          108 YPSKLTFDIGYT--------------RMDTLKVSCENADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWG  173 (666)
T ss_dssp             CCSCEEEEESSS--------------STTEEEEEESSCCEEEEEEECSSHHHHHHHHHHHHCCCCCCCGGGGSEEEEETT
T ss_pred             CCCCEEEEECCC--------------CCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             687579970355--------------466489998358668999818998999999998607554796010245635346


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf             89988999999961008999349981022369973125779999995899999997699399974572146999155699
Q 003671          375 YRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYWLHNE  454 (804)
Q Consensus       375 y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~~m~~~L~~~g~k~v~iidP~i~~~~~y~~~~~  454 (804)
                      |.++++|++++++|++++||||+||+||+||+++++||||+++||||++|+++||++|+|+++|+||+|+.+.+|++|++
T Consensus       174 Y~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~~~~~ft~d~~~FPdp~~mv~~Lh~~G~k~v~~idP~i~~~~~~~~y~e  253 (666)
T 3nsx_A          174 YTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEE  253 (666)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCCCEEEECGGGSSTTCTTCCCTTTCTTHHHHHHHHHTTTCEEEEEEESCEECCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHH
T ss_conf             68989999999878862997316998307777514651072008778999999987691597663155344247117764


Q ss_pred             HHHCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-------
Q ss_conf             8886844776999970332208975224588876899997410233445887862486227988878899854-------
Q 003671          455 ATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGPEVT-------  527 (804)
Q Consensus       455 ~~~~~~~vk~~~g~~~~g~~WpG~~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g~e~t-------  527 (804)
                      +.++|+|||+++|+++.+.||||.+++||||||+|++||.++++..  . ..+++++|+|||||++|++++..       
T Consensus       254 ~~~~g~fvk~~~G~~~~g~~WpG~~~~pDftnp~a~~ww~~~~~~~--~-~~Gidg~W~DmnEp~~f~~~~~~~~~~~~~  330 (666)
T 3nsx_A          254 GVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFL--I-DQGIEGFWNDMNEPAIFYSSEGLAEAKEFA  330 (666)
T ss_dssp             HHHTTCBCBCTTSCBCCEEETTEEEECBCTTSHHHHHHHHHTTHHH--H-TTTCCEEEEESTTTCCSEEHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH--H-HCCCHHHHHCCCCCCEEECHHHHHHHHHHH
T ss_conf             0103821147789822688457756784326978999865554687--8-546233210468862475587899999998


Q ss_pred             --CC--------------------------CCCCCC---CCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             --78--------------------------877657---86320000003478999986999987008999984885024
Q 003671          528 --MP--------------------------RDALHL---DRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAF  576 (804)
Q Consensus       528 --~~--------------------------~d~~h~---~~~~~~~~hN~Yg~~~~~at~~~l~~~~~~~~RpfilsRs~  576 (804)
                        ++                          .+..|.   ++++|+++||+||+++++|++++++++.+ ++||||||||+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~h~~~g~~~~~~~~hNlYg~~~~~at~e~l~~~~~-~~RpfilsRS~  409 (666)
T 3nsx_A          331 GEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDP-EKRFLMFSRSS  409 (666)
T ss_dssp             HHHHHCCSSCSCHHHHHHHHHHTTTCHHHHTSCEEEETTEEEEGGGGGGGHHHHHHHHHHHHHHHHCT-TCCCEEEESSE
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHCC-CCEEEEEECCC
T ss_conf             76442566611234577887652288578787760158828751131222020001778899986198-74399986100


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             47987644001699867247999889999997135998312466899999998799998621532322222478999988
Q 003671          577 FAGSQRYGAVWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRR  656 (804)
Q Consensus       577 faGsqry~~~WtGDn~s~W~~L~~si~~~L~~~l~G~p~~g~DigGF~g~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~  656 (804)
                      |+|+|||+++|+|||.|+|++|+.+|+++|++||+|+||||+|||||.|++++|||+||+|+|||+||||+|++.++++|
T Consensus       410 ~aGsqry~~~W~GDn~s~W~~L~~sI~~~L~~~l~G~p~~g~DIGGF~g~~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~  489 (666)
T 3nsx_A          410 YIGMHRYGGIWMGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQ  489 (666)
T ss_dssp             ETTGGGTCEEEECCSSCCTHHHHHHHHHHHHHHHTTCCSEEECCCCCBTCSCHHHHHHHHHHHTTSSSEEEEECSSBCCC
T ss_pred             EECEEECCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
T ss_conf             11100037563178713899998764425644300046655655767877348999999987337665504544574301


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEE
Q ss_conf             74335704799999999999963499999999999749963245555799997434569536424953597455368716
Q 003671          657 EPWLFGERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKH  736 (804)
Q Consensus       657 ePw~~~~~~~~~~r~~i~lRy~LlPY~Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~  736 (804)
                      |||.|+  +.+++|++|++||+||||+||++++||.+|.|||||||++||+|++++++++|||+|++||||||+++|+++
T Consensus       490 ePw~~~--~~~~~r~~i~lRy~LlPYlYtl~~~a~~~G~Pv~RPL~~efP~D~~~~~i~dQfm~G~~LLVaPV~~~g~~~  567 (666)
T 3nsx_A          490 ECYQFE--NIEDFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARG  567 (666)
T ss_dssp             CGGGST--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEECHHHHCTTCTTGGGCCSCEEETTTEEECCCCSTTCSE
T ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHEECCCEEEEEEEEECCCC
T ss_conf             131147--889987776555456788899999987348805511103578737877644552126624772133205661


Q ss_pred             EEEEECCCCCEEEC------CCCCEEECCEEEEEECCCCCCCEEECCCCEEEECCCCCCCHHHHCCCCCEEEEC
Q ss_conf             99992999926889------899299599899999289985489719917520158888411113998399979
Q 003671          737 ISVYLPGKESWYDI------RTGARVKGGVTHKLEVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVRS  804 (804)
Q Consensus       737 ~~vylP~~g~Wyd~------~t~~~~~gg~~~~v~~pl~~iPvfvR~GsIip~~~~~~~st~~~~~~p~~l~va  804 (804)
                      |+|||| +|.|||+      +|++.+.||+ +.+++||++||||||+|+|||++++ .++|.+++.+|++|+|+
T Consensus       568 ~~vYLP-~g~W~d~~~~~~~~t~~~~~gG~-~~v~apl~~iPvfvR~GsIiP~~~~-~~~t~~~~~~~~~l~v~  638 (666)
T 3nsx_A          568 RYVYLP-EEMKFIKFMPDGSISEEVLEKGV-HYVDVALNEVPLFIRSGKCIPVAEA-AECVKDIDTENMQLIGY  638 (666)
T ss_dssp             EEEEES-SCEEEEEECTTSCEEEEEECSEE-EEEECCTTCEEEEEETTCEEEECCC-CSSGGGCCCSSCEEEEC
T ss_pred             EEEECC-HHEEEEEEECCCCEEEEEECCCC-EEEEEECCEEEEEEECCCEEEECCC-HHHHHHCCHHHEEEEEC
T ss_conf             389763-05079997048831478705873-1588532104699875836664550-22032258737079840


No 5  
>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*
Probab=1.00  E-value=1  Score=1253.23  Aligned_cols=647  Identities=22%  Similarity=0.425  Sum_probs=567.3

Q ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf             01798379829999703899999985139999999979979999932999999988311366546774333210012455
Q 003671           59 NQVTISDDGDISAKLVPKNHDDHHQINPLILSLSIYQDGIVRLKIDEDPTLNPRKQRFQVPDVVLPQFESKKLYLQRYSK  138 (804)
Q Consensus        59 ~sv~~~~~~~~~a~l~~~~~~~~~~~~~l~l~i~~~~~~~iRv~I~e~~~~~~~~~Ry~vp~~l~~~~~~~~~~~~~~~~  138 (804)
                      .+.+.+ ++.+.....           .-.++|+++++++|||++...+.   ..+.|    +++.++....+.+.+.  
T Consensus        39 ~~~~~~-~~~~~~~~~-----------~~~~~i~~~~~~iiRv~~~~~~~---~~~s~----av~~~~~~~~~~v~~~--   97 (817)
T 4ba0_A           39 KEHKLR-NDGLVITTN-----------QGNIRLQFKSEAAIEVLYRADSK---QLPSF----ALAQPESAIKAQLTET--   97 (817)
T ss_dssp             EEEECC-SSSEEEEET-----------TEEEEEEEEETTEEEEEESTTSC---CCCCS----SCSSTTCCCCCEEEEC--
T ss_pred             EEEEEC-CCEEEEEEC-----------CEEEEEEEECCCEEEEEEECCCC---CCCCE----EEECCCCCCCEEEEEC--
T ss_conf             689992-999999989-----------95899999889989999977998---89990----7757898884599974--


Q ss_pred             CCCCCCCCCEEEEECCCEEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEEE
Q ss_conf             43478898704750787699998437299999956991899964588600002556720111012444789999831699
Q 003671          139 ETIDGEGDASVVYLSDGYEAVLRHDPFEVYVRYKGGNSRVLSLNSNGLFDFEEKNEGEEWEERFRGHTDTRPYGPQSISF  218 (804)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~v~i~~~PF~i~v~~~~~g~~v~~~n~~~~~~~e~~~~~~~~~~~f~~~~d~~p~gp~~v~~  218 (804)
                             +..+.+.+.+++++|+++||+|++++  +|++++.. ..++ .++                      ...+.+
T Consensus        98 -------~~~~~i~t~~l~v~i~~~p~~i~~~~--~g~~l~~~-~~~~-~~~----------------------~~~~~~  144 (817)
T 4ba0_A           98 -------ENHLQFSGGTLTARIQKRPFAISYYR--DSELLLAE-ESGF-QVN----------------------TDKINF  144 (817)
T ss_dssp             -------SSEEEEECSSEEEEEETTTTEEEEEE--TTEEEEEE-EEEE-ECC------------------------CEEE
T ss_pred             -------CCEEEEEECCEEEEEECCCEEEEEEE--CCEEEEEE-CCCC-EEE----------------------CCCEEE
T ss_conf             -------99999996999999986886999997--99499982-5773-550----------------------771599


Q ss_pred             EEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf             99865998434079878988888998999778973164204434547999988865253899637898638999964874
Q 003671          219 DVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYGSIPFMISHGKSGRTSGFFWLNAAE  298 (804)
Q Consensus       219 ~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y~~~~~~~lYg~iPf~~s~~~~~~~~Gvf~~ns~~  298 (804)
                      .+.+..+|++||||||+..++++         |++++|||+|.++|..++. .+|++||||++++    ++||||+|++.
T Consensus       145 ~~~l~~~e~~yGlGe~~~~l~~~---------G~~~~l~n~d~~~~~~~~~-~~y~~iPf~~s~~----~yGvf~dn~~~  210 (817)
T 4ba0_A          145 RFYLSPGEKILGGGQRILGMDRR---------GQRFPLYNRAHYGYSDHSG-QMYFGLPAIMSSK----QYILVFDNSAS  210 (817)
T ss_dssp             EEECCTTCCEEEEESCBSCSCCT---------TEEEEECCCCCTTCCSCBS-SCSCEEEEEEETT----SEEEEECCCSS
T ss_pred             EEECCCCCEEECCCCCCCCCCCC---------CCEEEEEECCCCCCCCCCC-CCCCCCCEEEECC----CEEEEEECCCC
T ss_conf             99869985288576457873459---------9799877658777677886-5333543899667----48999987886


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             39996388877665645678676421499721472899999469978999999980399999952201332344688998
Q 003671          299 MQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDE  378 (804)
Q Consensus       299 ~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~y~~~  378 (804)
                      +++|+..+              ....+.|.+++|.+|+|||.||+|++|+++|++|||+|+|||+||||||||||+|.++
T Consensus       211 ~~~d~~~~--------------~~~~~~~~~~gg~ld~y~~~G~~p~~v~~~Y~~ltG~~~lpP~WalG~~~sr~~Y~s~  276 (817)
T 4ba0_A          211 GAMDIGKT--------------ESDILQLEAKSGRSAYILVAGNSYPSLIENFTQVTGRQPLPPRWALGSFASRFGYRSE  276 (817)
T ss_dssp             EEEEESSS--------------STTEEEEEESSSCCEEEEEECSSHHHHHHHHHHHHCCCCCCCGGGGSBEECCBCCCSH
T ss_pred             EEEEEEEC--------------CCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf             69999707--------------9987999982783799995699999999999986099877983113760542558999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCC-----CCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf             899999996100899934998102236-----997312577999999589999999769939997457214699915569
Q 003671          379 EDVEQVDSKFDEHDIPYDVLWLDIEHT-----DGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYWLHN  453 (804)
Q Consensus       379 ~~v~~v~~~~~~~~iP~D~iwlDi~~~-----~~~~~ft~d~~~FPdp~~m~~~L~~~g~k~v~iidP~i~~~~~y~~~~  453 (804)
                      ++|++++++|++++||||++|+|++|+     +..++||||+++||||++|+++||++|+|+++|++|+|+.++  +.|+
T Consensus       277 ~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~~~~~gdftwd~~~FPdp~~mv~~Lh~~G~k~vl~i~P~I~~~s--~~y~  354 (817)
T 4ba0_A          277 AETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWDKENFPTPLDMMADFKQQGVKTVLITEPFVLTSS--KRWD  354 (817)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEECGGGSCSSSSSCTTCCSCCTTTCSCHHHHHHHHHHTTCEEEEEECSEEETTS--TTHH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--HHHH
T ss_conf             99999999988737997489983652377563543762026100889899999999779989999677746886--7789


Q ss_pred             HHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             98886844776999970332208975224588876899997410233445887862486227988878899854788776
Q 003671          454 EATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGPEVTMPRDAL  533 (804)
Q Consensus       454 ~~~~~~~~vk~~~g~~~~g~~WpG~~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g~e~t~~~d~~  533 (804)
                      ++.++|+|+|+++|+++.+.||||.+++||||||+|++||.++++...   ..+++++|+|||||+++       |.|+.
T Consensus       355 e~~~~g~~vk~~~G~~~~~~~w~G~~~~~DftnP~ar~ww~~~~~~l~---~~GvDg~W~DmnEp~~~-------p~d~~  424 (817)
T 4ba0_A          355 DAVKAKALAKDPQGQPKAFELYFGNGGIIDVFSKEGSRWFSSIYKDLS---KQGVAGWWGDLGEPEMH-------PEDTQ  424 (817)
T ss_dssp             HHHHTTCBCBCTTSSBCCEEETTEEEEEBCTTSHHHHHHHHHHHHHHH---HHTCCEEEECCTTTSSC-------CTTCE
T ss_pred             HHHHCCEEEECCCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCCCCC-------CCCCC
T ss_conf             887599899989998578886589851166899899999999999997---57974899568887768-------85422


Q ss_pred             CCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             5786320000003478999986999987008999984885024479876440-016998672479998899999971359
Q 003671          534 HLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGA-VWTGDNTAEWEQLRVSVPMILTLGLTG  612 (804)
Q Consensus       534 h~~~~~~~~~hN~Yg~~~~~at~~~l~~~~~~~~RpfilsRs~faGsqry~~-~WtGDn~s~W~~L~~si~~~L~~~l~G  612 (804)
                      |++| +|+++||+||++|+++++++++++.+ ++|||+||||+|+|+|||++ +|+|||.++|++|+.+|+++|++|++|
T Consensus       425 ~~~g-~~~~~hN~Y~~~~~~a~~e~~~~~~~-~~RpfilsRs~~aGsqry~~~~WsGDn~s~W~~L~~~i~~~L~~~lsG  502 (817)
T 4ba0_A          425 HAIG-DADTVHNAYGHRWAEMLYQQQLDQFP-ELRPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQVELALQMSLLG  502 (817)
T ss_dssp             ETTE-EHHHHGGGHHHHHHHHHHHHHHHHCT-TSCCCEEESCCCTTGGGGTEEEBCCSCBSSHHHHHTHHHHHHHHHHTT
T ss_pred             CCCC-CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             1699-77886558899999999999997368-986489988505754557766748863377789999899998775308


Q ss_pred             CCCCCCCCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98312466899999--9987999986215323222224789999887433570479999999999996349999999999
Q 003671          613 MSFSGADVGGFFGN--PDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPYFYTLFREA  690 (804)
Q Consensus       613 ~p~~g~DigGF~g~--~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~i~lRy~LlPY~Yt~~~~a  690 (804)
                      +||||+|||||+|+  +++|||+||+|+|||+|+||+|++ +..++|||.|++++.+++|+++++||+||||+||+++++
T Consensus       503 ~p~~g~DIGGF~g~~~~~~EL~~RW~Q~gaF~P~~R~H~~-~~~~~epw~~~~~~~~~~r~~i~lRy~LlPYlYtl~~~a  581 (817)
T 4ba0_A          503 FGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHGQ-DHIPSEPVFQDEETKAILRPLVKLRYRMLPYIYTAAYQN  581 (817)
T ss_dssp             CTTCBCCBTCCBCCSSCCHHHHHHHHHHHHTSSCBCBCCB-TTSCCSGGGSCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9723567277789998998999999886417721570378-888999853680799999999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEE-CCEEEEEECCCC
Q ss_conf             9749963245555799997434569536424953597455368716999929999268898992995-998999992899
Q 003671          691 NTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVK-GGVTHKLEVSEE  769 (804)
Q Consensus       691 ~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~Wyd~~t~~~~~-gg~~~~v~~pl~  769 (804)
                      |.+|.|||||||++||+|++++++++|||+|++||||||+++|+++|+|||| +|.|||+||++.++ ||+++++++|++
T Consensus       582 ~~~G~Pv~RPL~~efP~D~~~~~i~~Qfm~G~~lLVaPV~~~g~~~~~vYLP-~g~Wyd~~tg~~~~~Gg~~~~~~apl~  660 (817)
T 4ba0_A          582 TLTGMPLMRPLFFSDEKNPALIDNKTSYFWGDSLLVTPITQAGVESVSIPAP-KGVWFDFWKDTRYQTDGAPLTLPTDLH  660 (817)
T ss_dssp             HHHCCCSEEEGGGGCTTCGGGGGCCSCEEETTTEEECCCCSTTCCEEEECCC-SEEEEETTTCCEEEESSSCEEEECCSS
T ss_pred             HHHCCCCCCCCCCCCCCCHHHHCCCCEEEECCCEEEEECCCCCCCEEEEECC-CCEEEECCCCCEEEECCEEEEEECCCC
T ss_conf             9619875355444699976784449885438857998612589647999908-823898689959964998999973764


Q ss_pred             CCCEEECCCCEEEECCCCCCCHHHHCCCCCEEEEC
Q ss_conf             85489719917520158888411113998399979
Q 003671          770 SVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVRS  804 (804)
Q Consensus       770 ~iPvfvR~GsIip~~~~~~~st~~~~~~p~~l~va  804 (804)
                      +||||+|+|+|||++++. +++.+.+.++++|.|+
T Consensus       661 ~iPvfvR~GsIiP~~~~~-~~~~~~~~~~l~l~v~  694 (817)
T 4ba0_A          661 TIPVLVKAGAFMPYVPAV-STTEDYRSDSLEIHYY  694 (817)
T ss_dssp             CCCEEEETTCEEEECCCC-SSGGGCCCSEEEEEEE
T ss_pred             CCEEEEECCEEEEECCCC-CCCCCCCCCCEEEEEE
T ss_conf             330599678174406766-6654358762599999


No 6  
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=1.00  E-value=1  Score=1193.18  Aligned_cols=535  Identities=31%  Similarity=0.613  Sum_probs=500.9

Q ss_pred             CEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             16999986599843407987898888899899977897316420443454799998886525389963789863899996
Q 003671          215 SISFDVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYGSIPFMISHGKSGRTSGFFWL  294 (804)
Q Consensus       215 ~v~~~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y~~~~~~~lYg~iPf~~s~~~~~~~~Gvf~~  294 (804)
                      .+.+.+.++.+|++||||||+..|+++         +++++|||+|+++|..+ .+++|++|||+++++ +++++||||+
T Consensus        51 ~~~~~~~~~~~e~~yGlGE~~~~l~~~---------g~~~~l~n~D~~~~~~~-~~~lY~~iPf~~~~~-~~~~~Gvf~~  119 (693)
T 2g3m_A           51 KVIVEKSLDLKEHIIGLGEKAFELDRK---------RKRYVMYNVDAGAYKKY-QDPLYVSIPLFISVK-DGVATGYFFN  119 (693)
T ss_dssp             EEEEEEECCTTCEEEECSSCSSCSSCC---------SEEEEECCCCCCSCCTT-CCCCSEECCEEEEEE-TTEEEEEEEC
T ss_pred             EEEEEEECCCCCCEEECCCCCCCCCCC---------CCEEEEEECCCCCCCCC-CCCCCCCEEEEEEEC-CCCEEEEEEE
T ss_conf             799999848998589378879886879---------97888686477766878-766545142799971-6998999995


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             48743999638887766564567867642149972147289999946997899999998039999995220133234468
Q 003671          295 NAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWN  374 (804)
Q Consensus       295 ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~  374 (804)
                      |++.++||++.+              ....++|.+++|.+|+|||.||+|++|+++|++|||+|+|||+||||||||||+
T Consensus       120 n~~~~~~d~~~~--------------~~~~~~~~~~~g~lD~y~~~G~~~~~v~~~Y~~ltG~p~~pP~WalG~~qsr~~  185 (693)
T 2g3m_A          120 SASKVIFDVGLE--------------EYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTELTGKPFLPPMWAFGYMISRYS  185 (693)
T ss_dssp             CCSCEEEEESSS--------------STTEEEEEESSSCEEEEEEECSSHHHHHHHHHHHHCCCCCCCGGGGSEEEEETT
T ss_pred             CCCCEEEEEECC--------------CCCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             798439997023--------------586699998799779999968999999999999769998996020375435876


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf             89988999999961008999349981022369973125779999995899999997699399974572146999155699
Q 003671          375 YRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYWLHNE  454 (804)
Q Consensus       375 y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~~m~~~L~~~g~k~v~iidP~i~~~~~y~~~~~  454 (804)
                      |.++++|+++++++++++||||+||+|++||+++++||||+++||||++|+++||++|+|+++|++|+|+.+++|.+|++
T Consensus       186 y~~~~ev~~v~~~~~~~~IP~dvi~lD~~y~~~~~dft~d~~~FPdp~~mv~~Lh~~G~k~~l~i~P~I~~~~~y~~y~e  265 (693)
T 2g3m_A          186 YYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFPEPKKLIDELHKRNVKLITIVDHGIRVDQNYSPFLS  265 (693)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEECGGGSBTTBTTCCCTTTCSCHHHHHHHHHHTTCEEEEEECSCEECCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCCEECHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH
T ss_conf             88999999999999972998546998466006886303774458998999999997898899995676467887399999


Q ss_pred             HHHCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCC--C-------
Q ss_conf             8886844776999970332208975224588876899997410233445887862486227988878899--8-------
Q 003671          455 ATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGP--E-------  525 (804)
Q Consensus       455 ~~~~~~~vk~~~g~~~~g~~WpG~~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g~--e-------  525 (804)
                      +.+  +|||+++|+.+.+.||||.++++||+||+|++||.++++.  +. ..+++++|+|||||++|+.+  +       
T Consensus       266 ~~~--~fvk~~~G~~~~g~~W~g~~~~~Dftnp~a~~ww~~~~~~--l~-~~GiDg~w~DmnEp~~f~~~~~~~~~~~~~  340 (693)
T 2g3m_A          266 GMG--KFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLISE--WL-SQGVDGIWLDMNEPTDFSRAIEIRDVLSSL  340 (693)
T ss_dssp             HTT--SBCEETTSSBCEEEETTEEEECBCTTSHHHHHHHHHHHHH--HH-TTTCCEEEECSTTTCCCHHHHHHHHHHTTS
T ss_pred             HHH--HEEECCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHH--HH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             875--5189899998787747997450289998999999999999--87-369748997168754346654433333577


Q ss_pred             ----------CCCCCCCCCCC-C--CCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             ----------54788776578-6--3200000034789999869999870089999848850244798764400169986
Q 003671          526 ----------VTMPRDALHLD-R--VEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNT  592 (804)
Q Consensus       526 ----------~t~~~d~~h~~-~--~~~~~~hN~Yg~~~~~at~~~l~~~~~~~~RpfilsRs~faGsqry~~~WtGDn~  592 (804)
                                .++|.|++|+. |  ..|+++||+||+++++|++++++++. + +|||+||||+|+|+|||+++|+|||.
T Consensus       341 p~~~~~~~~~~t~p~d~~~~~~g~~~~~~~~hN~Y~~~~~~a~~e~l~~~~-~-~RpfilsRS~~aGsqry~~~W~GD~~  418 (693)
T 2g3m_A          341 PVQFRDDRLVTTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSH-R-NEIFILSRAGYAGIQRYAFIWTGDNT  418 (693)
T ss_dssp             CSCBCCCGGGGSCCTTEEEEETTEEEEHHHHGGGHHHHHHHHHHHHHHHTT-C-CSCCEEESCEETTGGGTCEEECCSCC
T ss_pred             CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-C-CCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             533356533355675304636787465888621356899999999999617-8-87479982545888887423599853


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             7247999889999997135998312466899999------9987999986215323222224789999887433570479
Q 003671          593 AEWEQLRVSVPMILTLGLTGMSFSGADVGGFFGN------PDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNT  666 (804)
Q Consensus       593 s~W~~L~~si~~~L~~~l~G~p~~g~DigGF~g~------~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~  666 (804)
                      ++|++|+.+|+++|++|++|+||||+|||||.|+      +++|||+||+|+|||+|+||+|++.++.+||||.|++++.
T Consensus       419 s~W~~L~~~i~~~L~~~l~G~p~~g~DIGGF~g~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~ePw~~~~~~~  498 (693)
T 2g3m_A          419 PSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDGIDTEPVFLPDYYK  498 (693)
T ss_dssp             CSHHHHHHHHHHHHHHHTTTCCSEECEETCSCCSSSSCCCCCHHHHHHHHHHTTTCSCEEECCCTTSCCCCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCEECCHHHH
T ss_conf             57999999999999998629983567778887877667899989999999873465221503599998876745285899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf             99999999999634999999999997499632455557999974345695364249535974553687169999299992
Q 003671          667 QLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKES  746 (804)
Q Consensus       667 ~~~r~~i~lRy~LlPY~Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~  746 (804)
                      +++|+++++||+||||+||++++||.+|.|||||||++||+|++++++++|||+|++||||||+++| ++|+|||| +|.
T Consensus       499 ~~~r~~i~lRy~LlPYlYtl~~~a~~~G~Pi~RPL~~~fP~D~~~~~i~~Qfm~G~~lLVaPV~~~g-~~r~vYLP-~g~  576 (693)
T 2g3m_A          499 EKVKEIVELRYKFLPYIYSLALEASEKGHPVIRPLFYEFQDDDDMYRIEDEYMVGKYLLYAPIVSKE-ESRLVTLP-RGK  576 (693)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSEECHHHHCTTCGGGGGCCSCEEETTTEEECCCCSSS-SSCEEEEC-SSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCHHHHCCCCEEECCCCEEEEEEECCC-CEEEEECC-CCE
T ss_conf             9999999999987999999999998769963201103479986784569717607974998640179-67999979-972


Q ss_pred             EEECCCCCEEECCEEEEEECCCCCCCEEECCCCEEEECCC
Q ss_conf             6889899299599899999289985489719917520158
Q 003671          747 WYDIRTGARVKGGVTHKLEVSEESVPAFQRPGTIIPRRDR  786 (804)
Q Consensus       747 Wyd~~t~~~~~gg~~~~v~~pl~~iPvfvR~GsIip~~~~  786 (804)
                      |||+||++.++||+++++++   +||||+|+|+|||+++.
T Consensus       577 W~d~~tg~~~~Gg~~i~~~a---~iPvfvR~GsIiP~~~~  613 (693)
T 2g3m_A          577 WYNYWNGEIINGKSVVKSTH---ELPIYLREGSIIPLEGD  613 (693)
T ss_dssp             EEETTTCCEEESSEEEECCS---SSCEEEESSEEEEEGGG
T ss_pred             EEECCCCCEEECCEEEEEEE---EEEEEEECCEEEECCCC
T ss_conf             89888998997999999986---88799989979453789


No 7  
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*
Probab=1.00  E-value=1  Score=1188.13  Aligned_cols=663  Identities=22%  Similarity=0.391  Sum_probs=570.2

Q ss_pred             CEEEEEEEEECCCCCEEEEEE-CCCCC--CCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             617630179837982999970-38999--999851399999999799799999329999999883113665467743332
Q 003671           54 CSLIANQVTISDDGDISAKLV-PKNHD--DHHQINPLILSLSIYQDGIVRLKIDEDPTLNPRKQRFQVPDVVLPQFESKK  130 (804)
Q Consensus        54 y~~~~~sv~~~~~~~~~a~l~-~~~~~--~~~~~~~l~l~i~~~~~~~iRv~I~e~~~~~~~~~Ry~vp~~l~~~~~~~~  130 (804)
                      |...+.++++. ++.+++.+. .....  ...+...+.++|+.+.++++||++++........++|+++..  ..   ..
T Consensus        18 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~iiRv~~~~~~~~~~~~~~~~~~~~--~~---~~   91 (773)
T 2f2h_A           18 HPLQVFEVEQQ-DNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNIL--QD---VK   91 (773)
T ss_dssp             CCCEEEEEEEE-TTEEEEEEESSCCSSGGGSSSSCCEEEEEECSSTTEEEEEEESCTTSCCCCCCCCCCCC--SC---CC
T ss_pred             CCCEEEEEEEE-CCEEEEEEEEEEEECCCEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEECCC--CC---CC
T ss_conf             75205899995-99999999646730573131467489999996699799999758887777896352477--78---86


Q ss_pred             CEECCCCCCCCCCCCCCEEEEECCCEEEEEEE-CCCEEEEEEECCCEEEEEECCCCCEEEECCCCCCCHHHHHCCCCCCC
Q ss_conf             10012455434788987047507876999984-37299999956991899964588600002556720111012444789
Q 003671          131 LYLQRYSKETIDGEGDASVVYLSDGYEAVLRH-DPFEVYVRYKGGNSRVLSLNSNGLFDFEEKNEGEEWEERFRGHTDTR  209 (804)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~-~PF~i~v~~~~~g~~v~~~n~~~~~~~e~~~~~~~~~~~f~~~~d~~  209 (804)
                      ..+.+         ++..+.+.+.+++++|++ +||+|+|++  +|++++..+.+++..++..                 
T Consensus        92 ~~~~~---------~~~~~~i~t~~l~v~i~~~~p~~i~~~~--~g~~l~~~~~~~~~~~~~~-----------------  143 (773)
T 2f2h_A           92 VTIEN---------TERYAEFKSGNLSARVSKGEFWSLDFLR--NGERITGSQVKNNGYVQDT-----------------  143 (773)
T ss_dssp             EEEEE---------CSSEEEEEETTEEEEEECSSSCEEEEEE--TTEEEEEEETTSEEEEEET-----------------
T ss_pred             EEEEE---------CCCEEEEEECCEEEEEECCCCEEEEEEE--CCEEEEEECCCCCCEEECC-----------------
T ss_conf             18996---------4998999979999999848982899998--9979997158663215716-----------------


Q ss_pred             CCC-CCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCE
Q ss_conf             999-8316999986599843407987898888899899977897316420443454799998886525389963789863
Q 003671          210 PYG-PQSISFDVSFYDSDYVYGIPERATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYGSIPFMISHGKSGRT  288 (804)
Q Consensus       210 p~g-p~~v~~~~~~~~~~~~yGlgE~~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y~~~~~~~lYg~iPf~~s~~~~~~~  288 (804)
                       .| .+.+...+.+..+|++||||||+++|+++         |++++|||.|..    .+..++|++||||++++    +
T Consensus       144 -~~~~~~~~~~~~l~~~e~~YGlGE~~~~~~~~---------g~~~~l~n~d~~----~~~~~lY~~iPf~~s~~----g  205 (773)
T 2f2h_A          144 -NNQRNYMFERLDLGVGETVYGLGERFTALVRN---------GQTVETWNRDGG----TSTEQAYKNIPFYMTNR----G  205 (773)
T ss_dssp             -TTTEEEEEEEEECCTTCCEEEEEECCSCSSCT---------TEEEECCCCCCT----TSBSCCSEEEEEEEETT----S
T ss_pred             -CCCEEEEEEEEECCCCCEEEECCCCCCCCCCC---------CCEEEEEECCCC----CCCCCCCCEEEEEEECC----E
T ss_conf             -88705999999738997289788777860339---------968887866888----88766732389999797----8


Q ss_pred             EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             89999648743999638887766564567867642149972147289999946997899999998039999995220133
Q 003671          289 SGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAY  368 (804)
Q Consensus       289 ~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~G~tp~~vi~~Y~~ltG~p~lpP~walG~  368 (804)
                      +||||+|++.+.||++.+              ....+.|.+++|.+|+|||.||+|++|+++|++|||+|+|||+|||||
T Consensus       206 ~Gvf~~n~~~~~~d~~~~--------------~~~~~~~~~~~~~ldyy~~~G~~p~~v~~~Y~~LtG~p~lpP~walG~  271 (773)
T 2f2h_A          206 YGVLVNHPQCVSFEVGSE--------------KVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGL  271 (773)
T ss_dssp             EEEEECCSSCCEEEESSS--------------BTTEEEEEEESSEEEEEEEECSSHHHHHHHHHHHHCCCCCCCGGGGSE
T ss_pred             EEEEEECCCCEEEEEEEC--------------CCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999995798549998412--------------575499998268689999959999999999998732445687333586


Q ss_pred             CCCCC---CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--CEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             23446---889988999999961008999349981022369973--1257799999958999999976993999745721
Q 003671          369 HQCRW---NYRDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKK--YFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHI  443 (804)
Q Consensus       369 ~q~rw---~y~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~--~ft~d~~~FPdp~~m~~~L~~~g~k~v~iidP~i  443 (804)
                      ||||.   +| ++++|++++++|++++||+|++|+|++||++.+  +||||+++||||++|+++||++|+|+++|++|+|
T Consensus       272 w~s~~y~~~y-~e~~v~~v~~~~r~~~IP~dvi~lD~~w~~~~~w~dft~d~~~FPdp~~mv~~Lh~~G~k~~l~i~P~I  350 (773)
T 2f2h_A          272 WLTTSFTTNY-DEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKICVWINPYI  350 (773)
T ss_dssp             EEECCSSSCC-CHHHHHHHHHHHHHTTCCCCEEEECGGGBCTTCCSSCCBCTTTCSCHHHHHHHHHHTTCEEEEEECSEE
T ss_pred             EEECCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECHHHCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             8730234789-999999999999873998469997765346666664147732289989999999978998999846870


Q ss_pred             CCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             46999155699888684477699997033220897522458887689999741023344588786248622798887889
Q 003671          444 KRDDSYWLHNEATEKGYYVKDATKRDYDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNG  523 (804)
Q Consensus       444 ~~~~~y~~~~~~~~~~~~vk~~~g~~~~g~~WpG~~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g  523 (804)
                      +.++  ++|+++.++|+|||+++|+++.+.||||.++++|||||+|++||.++++...   ..+++++|+||||+     
T Consensus       351 ~~~s--~~y~e~~~~g~~vk~~~G~~~~~~~w~g~~~~~DftnP~a~~ww~~~~~~l~---d~Gvd~~w~D~~e~-----  420 (773)
T 2f2h_A          351 GQKS--PVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLV---AMGVDCFKTDFGER-----  420 (773)
T ss_dssp             CTTS--TTHHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHHHHHH---HTTCCEEEECCCCC-----
T ss_pred             CCCC--HHHHHHHHCCCEEECCCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHH---HCCCCEEECCCCCC-----
T ss_conf             7887--8999998789266889998304111079845668989899999999999998---65998897567898-----


Q ss_pred             CCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98547887765786320000003478999986999987008999984885024479876440016998672479998899
Q 003671          524 PEVTMPRDALHLDRVEHRELHNAYGYYFHMATSDGLLKRENGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWEQLRVSVP  603 (804)
Q Consensus       524 ~e~t~~~d~~h~~~~~~~~~hN~Yg~~~~~at~~~l~~~~~~~~RpfilsRs~faGsqry~~~WtGDn~s~W~~L~~si~  603 (804)
                          +|.|..|++|..|+++||+|+++++++++++++++. +++|||+||||+|+|+|||+++|+|||.++|++|+.+|+
T Consensus       421 ----~p~d~~~~~g~~~~~~hN~y~~~~~~a~~e~l~~~~-~~~rp~ilsRS~~aGsqRy~~~WsGDn~s~W~~L~~si~  495 (773)
T 2f2h_A          421 ----IPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTV-GEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLR  495 (773)
T ss_dssp             ----CCSSSBCTTCCCHHHHHHHHHHHHHHHHHHHHHTTT-CGGGCCEEESCBCTTGGGSCCEECCCCCSSHHHHHHHHH
T ss_pred             ----CCCCEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf             ----875514448998788423667999999999999962-898835886144676678860759977545999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997135998312466899999998799998621532322222478999988743357047999999999999634999
Q 003671          604 MILTLGLTGMSFSGADVGGFFGNPDTELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGERNTQLIREAIHVRYMFLPYF  683 (804)
Q Consensus       604 ~~L~~~l~G~p~~g~DigGF~g~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~i~lRy~LlPY~  683 (804)
                      ++|++|++|+||||+|||||.|++++|||+||+|+|+|+|+||+|++.  ..||||.|++++.+++|+++++||+||||+
T Consensus       496 ~~L~~~lsG~p~~g~DIGGF~g~~~~EL~~RW~Q~gaF~P~~R~H~~~--~~~ePw~~~~~~~~~~r~~i~lRy~LlPYl  573 (773)
T 2f2h_A          496 GGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSK--SYRVPWAYDDESCDVVRFFTQLKCRMMPYL  573 (773)
T ss_dssp             HHHHHHTTTCCCEEEETTCSSSCCCHHHHHHHHHHHHTSSEEEECCSS--SCCCGGGTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998633138862468768868989989999888764077756335698--885870415899999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEECCEEEE
Q ss_conf             99999999749963245555799997434569536424953597455368716999929999268898992995998999
Q 003671          684 YTLFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKESWYDIRTGARVKGGVTHK  763 (804)
Q Consensus       684 Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~Wyd~~t~~~~~gg~~~~  763 (804)
                      ||++++||.+|.|||||||++||+|++++++++|||+|++||||||++++. +|+|||| +|.|||+||++.++||++++
T Consensus       574 Ytl~~~a~~~G~Pi~RPL~~~fP~D~~~~~i~~Qfm~G~~lLVaPV~~~~~-~~~vYLP-~g~W~d~~tg~~~~Gg~~i~  651 (773)
T 2f2h_A          574 YREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAG-DVQFYLP-EGRWTHLWHNDELDGSRWHK  651 (773)
T ss_dssp             HHHHHHHHHHCCCSEECHHHHSTTCGGGTTCCSCEEETTTEEECCCCSSSC-EEEEEEC-SSEEEETTTCCEEECSEEEE
T ss_pred             HHHHHHHHHHCCCEECHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC-EEEEECC-CCEEEECCCCCEEECCEEEE
T ss_conf             999999986599503131035789867845498430077669941014685-5999989-98489889997997998999


Q ss_pred             EECCCCCCCEEECCCCEEEECCCCCCCHHHHCCCCCEEEE
Q ss_conf             9928998548971991752015888841111399839997
Q 003671          764 LEVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVR  803 (804)
Q Consensus       764 v~~pl~~iPvfvR~GsIip~~~~~~~st~~~~~~p~~l~v  803 (804)
                      +++||++||||+|+|+|||++++.. .+.....++++|.|
T Consensus       652 ~~~pl~~iPvfvR~GsIiP~~~~~~-~~~~~~~~~l~l~v  690 (773)
T 2f2h_A          652 QQHGFLSLPVYVRDNTLLALGNNDQ-RPDYVWHEGTAFHL  690 (773)
T ss_dssp             EECCTTCCCEEECSSEEEEECSCSS-CSCSCTTBSCEEEE
T ss_pred             EECCCCCCCEEEECCCEEEECCCCC-CCCCCCCCCEEEEE
T ss_conf             9788533767998892876356123-66656888669999


No 8  
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Probab=1.00  E-value=1  Score=1162.90  Aligned_cols=674  Identities=23%  Similarity=0.379  Sum_probs=544.5

Q ss_pred             EEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCC
Q ss_conf             17983798299997038999999851399999999799799999329999999883113665467743-33210012455
Q 003671           60 QVTISDDGDISAKLVPKNHDDHHQINPLILSLSIYQDGIVRLKIDEDPTLNPRKQRFQVPDVVLPQFE-SKKLYLQRYSK  138 (804)
Q Consensus        60 sv~~~~~~~~~a~l~~~~~~~~~~~~~l~l~i~~~~~~~iRv~I~e~~~~~~~~~Ry~vp~~l~~~~~-~~~~~~~~~~~  138 (804)
                      +.+.+ ++++...+..        .....++|+++.+++|||+..........++.+    ++++.+. .....+++.  
T Consensus        48 ~~~~~-~~~~~~~~~~--------~~~~~~~i~~~~~~~iRv~~~~~~~~~~~~~sl----~~~~~~~~~~~~~v~~~--  112 (1020)
T 2xvl_A           48 QVERT-AEGVVLTLPE--------GTVKKLRLQVMGERIIRVTALPGTDFGIVPESI----QVVAKPATNVPFSVDQA--  112 (1020)
T ss_dssp             EEEEC-SSEEEEECSS--------SSCCEEEEEEEETTEEEEEEESSSCGGGSCCCS----SCCCCCCSSCCCEEEEE--
T ss_pred             EEEEE-CCEEEEEECC--------CCCEEEEEEEECCCEEEEEEECCCCCCCCCCCE----EEECCCCCCCCEEEEEC--
T ss_conf             89990-9999999678--------786399999978997999984688677788650----56347667885089974--


Q ss_pred             CCCCCCCCCEEEEECCCEEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCCCC--CCE
Q ss_conf             434788987047507876999984372999999569918999645886000025567201110124447899998--316
Q 003671          139 ETIDGEGDASVVYLSDGYEAVLRHDPFEVYVRYKGGNSRVLSLNSNGLFDFEEKNEGEEWEERFRGHTDTRPYGP--QSI  216 (804)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~v~i~~~PF~i~v~~~~~g~~v~~~n~~~~~~~e~~~~~~~~~~~f~~~~d~~p~gp--~~v  216 (804)
                             +..+.+.+.+++++|++++++|.|++. +|++++.-...+  .|...            ..+.+|.|.  -++
T Consensus       113 -------~~~~~~~t~~l~~~v~~~~~~i~f~d~-~g~~ll~e~~~~--~~~~~------------~~~~r~~~~~~~~~  170 (1020)
T 2xvl_A          113 -------GEKLVLKTSQVSAEVSLLDGTVSFRDA-KGNVLLQEENRG--TFSPV------------IHDPDPVDADSYAL  170 (1020)
T ss_dssp             -------TTEEEEECSSEEEEEETTTCCEEEEET-TSCEEEEBSSSC--EEECC------------CSCSSCCCTTCEEE
T ss_pred             -------CCEEEEEECCEEEEEECCCCEEEEEEC-CCCEEEEECCCC--CCCCC------------CCCCCCCCCCCEEE
T ss_conf             -------998999949899999888867999908-998966504567--65522------------12232368873499


Q ss_pred             EEEEEECCCCCEEECCCC-CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             999986599843407987-8988888998999778973164204434547999988865253899637898638999964
Q 003671          217 SFDVSFYDSDYVYGIPER-ATSFALKPTRGPNVEESEPYRLFNLDVFEYLHDSPFGLYGSIPFMISHGKSGRTSGFFWLN  295 (804)
Q Consensus       217 ~~~~~~~~~~~~yGlgE~-~~~l~l~~t~~~~~~~~~~y~l~n~D~~~y~~~~~~~lYg~iPf~~s~~~~~~~~Gvf~~n  295 (804)
                      ...|..+.+|++|||||| ...|++|         |+.+.|||.|           +|.+|||++|++    +|||||+|
T Consensus       171 ~~~f~~~~dE~~yGlGq~q~g~ln~r---------G~~~~l~~~n-----------~~~siPf~~s~~----~YGilwdn  226 (1020)
T 2xvl_A          171 RQEFNRGSDEGFFGLGQHQNGQVNYA---------GENVELTTYN-----------LVISIPFLVSSR----NYGLLWDN  226 (1020)
T ss_dssp             EEEECTTCCCCEEEEEECSSCCSSCT---------TSCEEECCBT-----------TBEEEEEEEESS----SEEEEECC
T ss_pred             EEEEECCCCCCEECCCCCCCCCCCCC---------CCEEEEEECC-----------CCCCEEEEECCC----CEEEEEEC
T ss_conf             99980799981687876877756558---------9888868668-----------775161899278----58999958


Q ss_pred             CCCEEEEE--CCC------------CCCC---------------------------------------CCC---------
Q ss_conf             87439996--388------------8776---------------------------------------656---------
Q 003671          296 AAEMQIDV--LGD------------GWNA---------------------------------------ESG---------  313 (804)
Q Consensus       296 s~~~~vdi--~~~------------~~~~---------------------------------------~~~---------  313 (804)
                      ++.+.|..  ...            |...                                       ..+         
T Consensus       227 ~~~~~f~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~  306 (1020)
T 2xvl_A          227 NSITRFGDPREAQPLNQSLKLYDAEGKEGGLTVRYFVGDELKLTRVEADFNHQFYKQGNELENPFPEEVAGAYKNNTLRI  306 (1020)
T ss_dssp             CSCEEESCCSCCEETTSSEEEECTTSCBTSEEEEEEETTEEEEEEEESSCEECCEEETTEESSCCCTTTHHHHHTTCEEE
T ss_pred             CCCEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             97459835743102221001014578746236788517860478501123333432032225764444566665654048


Q ss_pred             ------------------------------------------------------------------------C--CCC-C
Q ss_conf             ------------------------------------------------------------------------4--567-8
Q 003671          314 ------------------------------------------------------------------------I--LLP-S  318 (804)
Q Consensus       314 ------------------------------------------------------------------------~--~~~-~  318 (804)
                                                                                              +  ..| .
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~~~~p~~  386 (1020)
T 2xvl_A          307 ELEGSIEAQATGKHQFKMYNSGYAQLSLDGEVVLDRWRMNWNPWYHNFYRELNAGDKHKLKVSWKPDGGFFHLRHLDPLP  386 (1020)
T ss_dssp             EEEEEEEESSCEEEEEEEEESEEEEEEETTEEEEEEEECTTSCEEEEEEEEECTTCEEEEEEEEECTTCCEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEEECCCEEEEEECCEEHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCC
T ss_conf             99999732788608999713660499888876123343127998630211011375378999971587535553157666


Q ss_pred             CCCCCCEEEEEE-CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf             676421499721-4728999994699789999999803999999522013323446889988999999961008999349
Q 003671          319 KQKRIDTFWMSE-AGIVDTFFFVGPGPKDVVRQYTSVTGMPSMPPLFSIAYHQCRWNYRDEEDVEQVDSKFDEHDIPYDV  397 (804)
Q Consensus       319 ~~~~~~~~~~s~-~G~lD~yif~G~tp~~vi~~Y~~ltG~p~lpP~walG~~q~rw~y~~~~~v~~v~~~~~~~~iP~D~  397 (804)
                      ......++|.++ +|.||+|||.||+|++|+++|++|||+|+|||+||||||||||+|.++++|++++++|++++||||+
T Consensus       387 ~~~~~~~~~~s~~gg~lDyy~~~G~tp~~Vv~~Yt~LTGrp~mpP~WalG~wqsr~~Y~sq~ev~~va~~~re~gIPlDv  466 (1020)
T 2xvl_A          387 ANEQHELSLASETGKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYRDRKIPIDN  466 (1020)
T ss_dssp             GGGSSSEEEEEEEESSEEEEEEECSSHHHHHHHHHHHHCCCCCCCGGGGSEEECCTTCCSHHHHHHHHHHHHHTTCCCCE
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf             66786189999169977999996999999999999986888899864414155317789999999999999980998446


Q ss_pred             EEEECCCCC--CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEEC
Q ss_conf             981022369--973125779999995899999997699399974572146999155699888684477699997033220
Q 003671          398 LWLDIEHTD--GKKYFTWDRLSFPHPEEMQRKLATKGRHMVTIVDPHIKRDDSYWLHNEATEKGYYVKDATKRDYDGWCW  475 (804)
Q Consensus       398 iwlDi~~~~--~~~~ft~d~~~FPdp~~m~~~L~~~g~k~v~iidP~i~~~~~y~~~~~~~~~~~~vk~~~g~~~~g~~W  475 (804)
                      ||+|++||.  ++++||||+++||||++|+++||++|+|+++|++|+|..++  +.|+++.++|++++...+..+.+|||
T Consensus       467 i~lD~~y~~~~~~~dFtwD~~rFPdp~~mv~~Lh~~G~k~vl~V~P~I~~~s--~~Y~e~~~~G~~v~~~~~~~~~~w~w  544 (1020)
T 2xvl_A          467 IVLDWSYWPEDAWGSHDFDKQFFPDPKALVDKVHAMNAQIMISVWPKFYPTT--DNYKELNAKGFMFNRNLDEKNLDWIG  544 (1020)
T ss_dssp             EEECSCCSCTTCTTSCCCCTTTCSCHHHHHHHHHHTTCEEEEEECSEECTTS--HHHHHHHHTTCEETHHHHTTCCCSST
T ss_pred             EEEECCCCCCCCCCCEEECHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--HHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf             9995520265766644878556789899999999889989999798548996--66899986897997477874454437


Q ss_pred             CCC-CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHCHHHHHHHH
Q ss_conf             897-52245888768999974102334458878624862279888788998547--887765786320000003478999
Q 003671          476 PGS-SSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGPEVTM--PRDALHLDRVEHRELHNAYGYYFH  552 (804)
Q Consensus       476 pG~-~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g~e~t~--~~d~~h~~~~~~~~~hN~Yg~~~~  552 (804)
                      ||. .+++|||||++++||.+.+.....  ..+++++|+|||||++|.+.+...  +.+...+.| .|+++||+||++++
T Consensus       545 pG~~~~v~DftNPear~~ww~~l~~~l~--~~GiDg~W~DmnEps~~~~~d~~~~~~l~~~~~~G-~~~~vhNlY~~~~~  621 (1020)
T 2xvl_A          545 KGYLNAFYDPFSPEATAIFWKQIRDKIN--VHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARG-NGAEIFNAYAVPHA  621 (1020)
T ss_dssp             TCCCCEEECTTSHHHHHHHHHHHHHHTG--GGTCCEEEECCTTTCSSTTBCHHHHHHTTCSBTTB-CGGGGTTCTHHHHH
T ss_pred             CCCCCEEECCCCHHHHHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHCCHHHHHHH
T ss_conf             9987415089994999999999988763--26885899558886556777854442456755678-56663323567889


Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------
Q ss_conf             986999987008999984885024479876440-016998672479998899999971359983124668999-------
Q 003671          553 MATSDGLLKRENGKDRPFVLARAFFAGSQRYGA-VWTGDNTAEWEQLRVSVPMILTLGLTGMSFSGADVGGFF-------  624 (804)
Q Consensus       553 ~at~~~l~~~~~~~~RpfilsRs~faGsqry~~-~WtGDn~s~W~~L~~si~~~L~~~l~G~p~~g~DigGF~-------  624 (804)
                      +|++++++++.+ ++|||+||||+|+|+|||++ +|+|||.++|++|+.+|+++|++||+|+||||+|||||+       
T Consensus       622 ~atye~l~~~~~-~kRpfilsRS~~aGsQRy~~~~WsGDn~ssW~~L~~sI~~~L~~glsGip~~g~DIGGF~~~~~y~~  700 (1020)
T 2xvl_A          622 EGVYQGELATDG-DKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRH  700 (1020)
T ss_dssp             HHHHHHHHHHCT-TSCCCEEESCCCTTGGGGTEEEECCSCBSSHHHHHHHHHHHHHHHHTTCCCEECCBTCSBCCHHHHE
T ss_pred             HHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
T ss_conf             999999997457-9853899916668777676016578667529999999999998753088623046587754334443


Q ss_pred             ------------CCCC----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------------9999----879999862153232222247899998874335704---799999999999963499999
Q 003671          625 ------------GNPD----TELLVRWYQLGAYYPFFRAHAHHDTKRREPWLFGER---NTQLIREAIHVRYMFLPYFYT  685 (804)
Q Consensus       625 ------------g~~~----~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~---~~~~~r~~i~lRy~LlPY~Yt  685 (804)
                                  |+++    +|||+||+|+|||+|+||+|++.  .+||||.|+++   +.+++|+++++||+||||+||
T Consensus       701 ~~~~~~~~~~g~g~~d~~~~~EL~~RW~Q~GaF~P~~R~H~~~--~~~EPW~f~~eg~~~~~~~r~~i~lRY~LlPYlYt  778 (1020)
T 2xvl_A          701 GKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRSHGQN--PYREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYT  778 (1020)
T ss_dssp             ETTEECSSGGGSCGGGHHHHHHHHHHHHHHHTTSSSEEECCSS--SCCSHHHHSCTTSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC--CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3333333334567777888989999998874278877542588--87531330676578999999999999988999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCC-EEECCCCCEEECCEEEEE
Q ss_conf             9999997499632455557999974345695364249535974553687169999299992-688989929959989999
Q 003671          686 LFREANTTGIPVVRPLWMEFPSDESTFTNDEAFMVGNALLVQGVYEERAKHISVYLPGKES-WYDIRTGARVKGGVTHKL  764 (804)
Q Consensus       686 ~~~~a~~~G~Pi~RPl~~~fP~D~~~~~~~~qfm~G~~lLVaPV~~~g~~~~~vylP~~g~-Wyd~~t~~~~~gg~~~~v  764 (804)
                      +++++|.+|.|||||||++||+|++++++++|||+|++||||||+++|+++|+|||| +|. |||+||++.++||+++++
T Consensus       779 l~~~a~~~G~Pi~RPL~~efP~D~~~~~i~dQfm~G~~LLVAPV~e~g~~~r~VYLP-~G~~WyD~~Tg~~~~GG~~i~v  857 (1020)
T 2xvl_A          779 LGGDTYHKDGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLP-AGSDWYNFYTGEKLAGGQTITA  857 (1020)
T ss_dssp             HHHHHHHTCCCSEECHHHHCTTCHHHHHCCSCEEETTTEEECCCCSTTCSEEEEEEC-TTSCEEETTTCCEECSSEEEEE
T ss_pred             HHHHHHHHCCCCEEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECC-CCCCEEECCCCCEEECCEEEEE
T ss_conf             999999759972102111378986784458720058986999882379856999907-9985077689949879989999


Q ss_pred             ECCCCCCCEEECCCCEEEECCCCCCCHHHHCCCCCEEEEC
Q ss_conf             9289985489719917520158888411113998399979
Q 003671          765 EVSEESVPAFQRPGTIIPRRDRFRRSSTQMVNDPYTLVRS  804 (804)
Q Consensus       765 ~~pl~~iPvfvR~GsIip~~~~~~~st~~~~~~p~~l~va  804 (804)
                      ++||++||||+|+|+|||+++.. +++.+++.+|++|+|+
T Consensus       858 ~apLd~iPvfvR~GsIIP~~~~~-~~t~~~~~~~l~l~V~  896 (1020)
T 2xvl_A          858 DAPLARVPLFVKAGAIVPTGPLI-QHVDEGLNSPLLITVY  896 (1020)
T ss_dssp             ECCTTCCCEEEETTCEEEECCCC-SSGGGGTTCCEEEEEE
T ss_pred             ECCCCCCCEEEECCCEEEECCCC-CCCCCCCCCCEEEEEE
T ss_conf             77855474486578474316876-6553357875499997


No 9  
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A*
Probab=1.00  E-value=1  Score=1157.44  Aligned_cols=675  Identities=21%  Similarity=0.409  Sum_probs=533.1

Q ss_pred             CEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCC--------CCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCE
Q ss_conf             139999999979979999932999999988311366--------546774333210012455434788987047507876
Q 003671           85 NPLILSLSIYQDGIVRLKIDEDPTLNPRKQRFQVPD--------VVLPQFESKKLYLQRYSKETIDGEGDASVVYLSDGY  156 (804)
Q Consensus        85 ~~l~l~i~~~~~~~iRv~I~e~~~~~~~~~Ry~vp~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (804)
                      ..+.++|+++.++++||++++.++..+  ..+. |.        +.++........+..        +++..+.+.+.++
T Consensus        64 ~~~~~~i~~~~~~i~Rv~~~~~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~t~~l  132 (1027)
T 2x2h_A           64 HPVQVQVTSYNNNSYRVRFNPDGPIRD--VTRG-PILKQQLDWIRTQELSEGCDPGMTF--------TSEGFLTFETKDL  132 (1027)
T ss_dssp             EEEEEEEEETTTTEEEEEECTTSSCCC--CSSS-SSCHHHHHHHHHHHHHTTCCCCCEE--------CTTSCEEEECSSE
T ss_pred             CCEEEEEEEECCCEEEEEEECCCCCCC--CCCC-CCCCCCCCCEEEECCCCCCCCEEEE--------CCCCEEEEEECCE
T ss_conf             971899999659969999846987566--4335-3334565511330455567731674--------3798699992879


Q ss_pred             EEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEC-CCCCCCHHHHHCCCCCCCCCCCCCEE-----EEEEECCCCCEEE
Q ss_conf             99998437299999956991899964588600002-55672011101244478999983169-----9998659984340
Q 003671          157 EAVLRHDPFEVYVRYKGGNSRVLSLNSNGLFDFEE-KNEGEEWEERFRGHTDTRPYGPQSIS-----FDVSFYDSDYVYG  230 (804)
Q Consensus       157 ~v~i~~~PF~i~v~~~~~g~~v~~~n~~~~~~~e~-~~~~~~~~~~f~~~~d~~p~gp~~v~-----~~~~~~~~~~~yG  230 (804)
                      +|+|. +||+|+|+++++|++++. +....+.++. +..+..+.+++.        | ..+.     +.+.+..+|++||
T Consensus       133 ~v~i~-~~~~i~v~~~~~g~~l~~-d~~~~~~~~~~~~~~~~~~d~~~--------~-~~~~~~~~~~~~~~~~~E~~yG  201 (1027)
T 2x2h_A          133 SVIIY-GNFKTRVTRKSDGKVIME-NDEVGTASSGNKCRGLMFVDRLY--------G-NAIASVNKNFRNDAVKQEGFYG  201 (1027)
T ss_dssp             EEEEC-TTCCEEEEETTTCCEEEE-BCEECCSSSCCEEEEEEEECTTT--------C-CCEEEEEECCTTCTTTCCEEEE
T ss_pred             EEEEE-CCCEEEEEECCCCEEEEE-ECCCCCCCCCCCCCCCCCCCCCC--------C-CCCCCCCEEEEEECCCCCCEEC
T ss_conf             99994-683899998899859876-05555453444455421133223--------4-3223221369983489983787


Q ss_pred             CCCCCCC------CCCCCCCCCCCCCCCCEEEEECCCCCCCC--------CC---C---CCCCCCEEEEEEECC----CC
Q ss_conf             7987898------88889989997789731642044345479--------99---9---888652538996378----98
Q 003671          231 IPERATS------FALKPTRGPNVEESEPYRLFNLDVFEYLH--------DS---P---FGLYGSIPFMISHGK----SG  286 (804)
Q Consensus       231 lgE~~~~------l~l~~t~~~~~~~~~~y~l~n~D~~~y~~--------~~---~---~~lYg~iPf~~s~~~----~~  286 (804)
                      |||+.+.      |++         +|+.+.+||.|.+.|..        ++   +   .+||++||||++++.    ++
T Consensus       202 lGE~~g~f~~~~~L~~---------rG~~~~~wN~D~~~y~~~~~~~~g~~s~~dp~~~~~lY~siPf~is~~~~g~~~~  272 (1027)
T 2x2h_A          202 AGEVNCKYQDTYILER---------TGIAMTNYNYDNLNYNQWDLRPPHHDGALNPDYYIPMYYAAPWLIVNGCAGTSEQ  272 (1027)
T ss_dssp             CTTCCEEETTEEESCC---------CSCEEEECCCCCGGGCCGGGCCTTCCSCCCCCTTSCCSEECCEEEEEESTTSTTC
T ss_pred             CCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             7654676666654145---------7867211460565445544456677654574334343453066998435667778


Q ss_pred             CEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEE--CCCHHHHHHHHHHHCCC-------
Q ss_conf             638999964874399963888776656456786764214997214728999994--69978999999980399-------
Q 003671          287 RTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAGIVDTFFFV--GPGPKDVVRQYTSVTGM-------  357 (804)
Q Consensus       287 ~~~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~lD~yif~--G~tp~~vi~~Y~~ltG~-------  357 (804)
                      .++|||++|++.+.+|++.+.++..         ......+.+++|.+|+|||.  ||+|++|+++|++|||+       
T Consensus       273 ~~yGvf~dn~~~~~fD~g~~~~~~~---------~~~~~~~~~~~g~lD~y~~~g~G~tp~~Vv~~Yt~LTGkp~~~~~l  343 (1027)
T 2x2h_A          273 YSYGWFMDNVSQSYMNTGDTTWNSG---------QEDLAYMGAQYGPFDQHFVYGAGGGMECVVTAFSLLQGKEFENQVL  343 (1027)
T ss_dssp             EEEEEEECCCSSEEEESSCCGGGCC---------CTTEEEEEESSCCEEEEEECCSSSSHHHHHHHHHHHTCCGGGTCSS
T ss_pred             CEEEEEEECCCCEEEECCCCCCCCC---------CCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             5699999179733897655544567---------5525999972687568999937999999999999973886522323


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCC-----------HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCC-----
Q ss_conf             ---99995220133234468899-----------88999999961008999349981022369973125779999-----
Q 003671          358 ---PSMPPLFSIAYHQCRWNYRD-----------EEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSF-----  418 (804)
Q Consensus       358 ---p~lpP~walG~~q~rw~y~~-----------~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~F-----  418 (804)
                         |+|||+||||||||||+|.+           +++|++|+++|++++||||+||+||+||+++++||||+++|     
T Consensus       344 tGrp~lpP~WalGy~qsR~gY~s~~~~~y~~~~~~~~v~~vv~~~r~~~IPlDvi~lDidymd~~r~FT~D~~~~~~~~~  423 (1027)
T 2x2h_A          344 NKRSVMPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEGYQNNNFPFEGLAVDVDMQDNLRVFTTKGEFWTANRV  423 (1027)
T ss_dssp             CSSSCCCCGGGGSCEEEEECCCBSSGGGCCCCTTCCBHHHHHHHHHHTTCCCCEEEECGGGSSTTCTTCCCGGGBTTSSC
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHC
T ss_conf             46778797777410124324454433233444218999999998987299975259733344687763145343750002


Q ss_pred             -----CCHHHHHHHHHHCCCEEEEEECCCCCCC---CCHHHHHHHHHCCCEEECCC-----------C--CCEEEEECCC
Q ss_conf             -----9958999999976993999745721469---99155699888684477699-----------9--9703322089
Q 003671          419 -----PHPEEMQRKLATKGRHMVTIVDPHIKRD---DSYWLHNEATEKGYYVKDAT-----------K--RDYDGWCWPG  477 (804)
Q Consensus       419 -----Pdp~~m~~~L~~~g~k~v~iidP~i~~~---~~y~~~~~~~~~~~~vk~~~-----------g--~~~~g~~WpG  477 (804)
                           |||++|+++||++|+|+++|++|+|+.+   ..|.+|+++.++|+|||+.+           |  +.|.|.||||
T Consensus       424 ~~~~fPdp~~mv~~Lh~~G~k~v~iidP~i~~~~~~~~y~~~~e~~~~g~fvk~~~~~~~~~~~~~dG~~~~y~g~vWpg  503 (1027)
T 2x2h_A          424 GTGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTDFGMTDDGPSDAYIGHLDYG  503 (1027)
T ss_dssp             CCSCCTTSCBHHHHHHHTTCEEEEEECSCEECCCTTCCCHHHHHHHHTTCBCBSCCSSCCCCCCCTTCCTTBCCEEEECS
T ss_pred             CCCCCCCHHHHHHHHHHCCEEEEEEECCEECCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             44568999999999986880899973644524876556677887876884886475676552225789875025543258


Q ss_pred             -----CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCC---C------CCC--------------
Q ss_conf             -----752245888768999974102334458878624862279888788998---5------478--------------
Q 003671          478 -----SSSYLDMLNPEIRTWWGTKFSYENYVGSTPSLYIWNDMNEPSVFNGPE---V------TMP--------------  529 (804)
Q Consensus       478 -----~~~~~Df~np~a~~ww~~~~~~~~~~g~~~~~~~W~DmnEps~f~g~e---~------t~~--------------  529 (804)
                           .+++||||||++++||.++++.  +. ..+++++|+|||||++|+...   .      ..+              
T Consensus       504 ~~~~g~~~~pDFtnp~a~~WW~~~~k~--l~-~~GvDg~W~DmnEPs~f~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~  580 (1027)
T 2x2h_A          504 GGVECDALFPDWGRPDVAEWWGNNYKK--LF-SIGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKT  580 (1027)
T ss_dssp             TTCEEEEECBCTTSTTHHHHHHHTTHH--HH-TTTCCEEEECSTTTCCCCCBTTSCTTCCCCTTCSBTTBCCTTCBCTTS
T ss_pred             CCCCCCEECCCCCCHHHHHHHHHHHHH--HH-HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             886474246588987899999999999--85-279878997089975344445654455555565455566555434433


Q ss_pred             -------CCCC--CCCCCCCHHHCHHHHHHHHHHH-HHHHHHHC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             -------8776--5786320000003478999986-99998700---899998488502447987644001699867247
Q 003671          530 -------RDAL--HLDRVEHRELHNAYGYYFHMAT-SDGLLKRE---NGKDRPFVLARAFFAGSQRYGAVWTGDNTAEWE  596 (804)
Q Consensus       530 -------~d~~--h~~~~~~~~~hN~Yg~~~~~at-~~~l~~~~---~~~~RpfilsRs~faGsqry~~~WtGDn~s~W~  596 (804)
                             .+..  +++...+.+.||+|++.+.+++ ++|+.++.   ...+||||||||+|+|+|||+++|+|||.++|+
T Consensus       581 y~p~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~at~~eg~~~~~~~l~~~kRpfilsRs~~aGsqRy~~~WsGDn~s~W~  660 (1027)
T 2x2h_A          581 YHPQVLVTDMRYENHGREPMVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSN  660 (1027)
T ss_dssp             SCTTCEEECSSSTTSCEEEGGGTGGGHHHHHHHHHHHHTTTTTGGGCCSCSCCCEEESCEETTGGGTCEEECCSCCSSHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             34443345531124676420226677899999999988766434312667631799623247667766544886456455


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------CCCHHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCC
Q ss_conf             99988999999713599831246689999--------9998799998621532322222478-------99998874335
Q 003671          597 QLRVSVPMILTLGLTGMSFSGADVGGFFG--------NPDTELLVRWYQLGAYYPFFRAHAH-------HDTKRREPWLF  661 (804)
Q Consensus       597 ~L~~si~~~L~~~l~G~p~~g~DigGF~g--------~~~~EL~~RW~Q~gaf~P~~R~H~~-------~~~~~~ePw~~  661 (804)
                      +|+.+|+++|++||+|+||||+|||||+|        ++++|||+||+|+|||+|+||+|++       .++..||||.|
T Consensus       661 ~L~~si~~~L~~~lsG~p~~g~DIgGF~g~~~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~~~~~~~~ePw~~  740 (1027)
T 2x2h_A          661 YIQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDHGKDYQELYMY  740 (1027)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEECCTTCSSCCCSSCTTCCCCHHHHHHHHHHHTTSSSCEEEEEBCBTTBCCSBSCCCGGGC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             68999999998875098702577476677776545689998999999886357710572367655455678876665025


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCEEEECC----CEEEEEEECCCCEE
Q ss_conf             7047999999999999634999999999997499632455557999974345-695364249----53597455368716
Q 003671          662 GERNTQLIREAIHVRYMFLPYFYTLFREANTTGIPVVRPLWMEFPSDESTFT-NDEAFMVGN----ALLVQGVYEERAKH  736 (804)
Q Consensus       662 ~~~~~~~~r~~i~lRy~LlPY~Yt~~~~a~~~G~Pi~RPl~~~fP~D~~~~~-~~~qfm~G~----~lLVaPV~~~g~~~  736 (804)
                      +++ .+++|+++++||+||||+||++++||.+|.|||||||+ ||+|++++. +++|||+|+    +||||||+++|+++
T Consensus       741 ~~~-~~~~r~~i~lRy~LlPYlYtl~~~a~~~G~Pi~RPl~~-fp~D~~~~~~~~~qfm~G~~~G~~lLVaPV~~~g~~~  818 (1027)
T 2x2h_A          741 PNE-MDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASM-YNNDSNVRRAQNDHFLLGGHDGYRILCAPVVWENSTE  818 (1027)
T ss_dssp             TTT-HHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCSSEEGGG-SSSCSSHHHHTTTCEEECTTTSCSEEECCCCSTTCCE
T ss_pred             CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC-CCCCHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCE
T ss_conf             738-99999999999987999999999998649962533234-7898778521585699747777887999540379806


Q ss_pred             EEEEECCCCCEEECC---C-C---CEEECCEEE-EEECCCCCCCEEECCCCEEEECCCCCCC----HHHHCCCCCEEEEC
Q ss_conf             999929999268898---9-9---299599899-9992899854897199175201588884----11113998399979
Q 003671          737 ISVYLPGKESWYDIR---T-G---ARVKGGVTH-KLEVSEESVPAFQRPGTIIPRRDRFRRS----STQMVNDPYTLVRS  804 (804)
Q Consensus       737 ~~vylP~~g~Wyd~~---t-~---~~~~gg~~~-~v~~pl~~iPvfvR~GsIip~~~~~~~s----t~~~~~~p~~l~va  804 (804)
                      |+||||++|.|||+|   + +   +.++||+++ ++++||++||||+|+|+|||++.+.+++    +..++.+|++|.|+
T Consensus       819 ~~vYLP~~g~W~d~~~~~~~~~~~~~~~gG~~i~~~~apl~~iPvfvR~GsIiP~~~~~~~~~~~~~~~~~~~~~~l~v~  898 (1027)
T 2x2h_A          819 RELYLPVLTQWYKFGPDFDTKPLEGAMNGGDRIYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVF  898 (1027)
T ss_dssp             EEEECCSSSEEEECSGGGGGSCCCCCEETTCEEEEEECCTTCCCEEEETTBEEEEECCTTSCCCCGGGCCTTSCEEEEEC
T ss_pred             EEEEECCCCCEEECCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             89997989856861445668720259749839999965765664598678175423544555544332235774599999


No 10 
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=1.00  E-value=1  Score=223.86  Aligned_cols=214  Identities=17%  Similarity=0.221  Sum_probs=172.4

Q ss_pred             EEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-------EEEE-EEEECCCHHHHHHH
Q ss_conf             996378986389999648743999638887766564567867642149972147-------2899-99946997899999
Q 003671          279 MISHGKSGRTSGFFWLNAAEMQIDVLGDGWNAESGILLPSKQKRIDTFWMSEAG-------IVDT-FFFVGPGPKDVVRQ  350 (804)
Q Consensus       279 ~~s~~~~~~~~Gvf~~ns~~~~vdi~~~~~~~~~~~~~~~~~~~~~~~~~s~~G-------~lD~-yif~G~tp~~vi~~  350 (804)
                      +++..  +..+|++.++.....|++...               .. ..+....|       .++. .++.|++|.+++++
T Consensus       117 ~~~~~--~~~~G~~~~~~~~~~f~~~~~---------------~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~v~~~  178 (564)
T 1zy9_A          117 FVAEE--GKVYGFLSSKIAHPFFAVEDG---------------EL-VAYLEYFDVEFDDFVPLEPLVVLEDPNTPLLLEK  178 (564)
T ss_dssp             EEEET--TEEEEESCCSSSEEEEEEETT---------------EE-EEEEECTTCCEEEEEECCCEEEEECSCHHHHHHH
T ss_pred             EECCC--CEEEEEEECCCCCCEEEEECC---------------CE-EEEEECCCCCCCCEEECCEEEEEECCCHHHHHHH
T ss_conf             33478--627999863776635897358---------------37-9999627965354143130999958999999999


Q ss_pred             HHHHCCCCCCCCCCCCC--CCCCCCCC----CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHHH
Q ss_conf             99803999999522013--32344688----9988999999961008999349981022369973125779999995899
Q 003671          351 YTSVTGMPSMPPLFSIA--YHQCRWNY----RDEEDVEQVDSKFDEHDIPYDVLWLDIEHTDGKKYFTWDRLSFPHPEEM  424 (804)
Q Consensus       351 Y~~ltG~p~lpP~walG--~~q~rw~y----~~~~~v~~v~~~~~~~~iP~D~iwlDi~~~~~~~~ft~d~~~FPdp~~m  424 (804)
                      |+++||+++ ||.|+.+  +..|+|++    .++++|+++++.++  ++|++.+++|++|+.+.++|++|+++||+++.|
T Consensus       179 y~~l~g~~~-~p~w~~~~P~gwnsW~~~~~~~te~~v~~~ad~~~--~~G~~~~~IDdgW~~~~Gdw~~d~~kFP~lk~l  255 (564)
T 1zy9_A          179 YAELVGMEN-NARVPKHTPTGWCSWYHYFLDLTWEETLKNLKLAK--NFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEM  255 (564)
T ss_dssp             HHHHHHHHT-TCCCCSSCCEEEESHHHHGGGCCHHHHHHHHHHGG--GTTCSEEEECTTSEEETTEEEEECTTCCCHHHH
T ss_pred             HHHHHCCCC-CCCCCCCCCEEECCHHCCCCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             999866268-98545688357715204275799999999999998--459829998865122258855385458998999


Q ss_pred             HHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCCC-EEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             999997699399974572146999155699888684477699997-0332208975224588876899997410233445
Q 003671          425 QRKLATKGRHMVTIVDPHIKRDDSYWLHNEATEKGYYVKDATKRD-YDGWCWPGSSSYLDMLNPEIRTWWGTKFSYENYV  503 (804)
Q Consensus       425 ~~~L~~~g~k~v~iidP~i~~~~~y~~~~~~~~~~~~vk~~~g~~-~~g~~WpG~~~~~Df~np~a~~ww~~~~~~~~~~  503 (804)
                      ++++|++|+|+.+|++|++.... ..+|++  ..++++++ +|.. ..+..|+|...++|++||++++||.+.++.  + 
T Consensus       256 vd~lh~~Glk~Giw~~P~~v~~~-S~ly~~--~pdw~v~~-~G~~~~~~~~W~~~~~~lD~t~P~a~~~~~~~~~~--~-  328 (564)
T 1zy9_A          256 AKVIAENGFIPGIWTAPFSVSET-SDVFNE--HPDWVVKE-NGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSS--L-  328 (564)
T ss_dssp             HHHHHHTTCEEEEEECTTEEETT-CHHHHH--CGGGBCEE-TTEECEEEEETTEEEEEBCTTCHHHHHHHHHHHHH--H-
T ss_pred             HHHHHHCCCEEEEEECCCCCCCC-CHHHHH--CCCEEEEC-CCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHH--H-
T ss_conf             99999879989999677756889-866886--88869965-99522200125786341289987799999999999--9-


Q ss_pred             CCCCCCEEEECCCCCCC
Q ss_conf             88786248622798887
Q 003671          504 GSTPSLYIWNDMNEPSV  520 (804)
Q Consensus       504 g~~~~~~~W~DmnEps~  520 (804)
                      ...+++++|.||+++..
T Consensus       329 ~~~GVD~iK~D~~~~~~  345 (564)
T 1zy9_A          329 RKMGYRYFKIDFLFAGA  345 (564)
T ss_dssp             HHTTCCEEEECCGGGGG
T ss_pred             HHCCCCEEEECCCCCCC
T ss_conf             86499889984788766


Done!