BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003672
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 312 bits (799), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 235/366 (64%), Gaps = 19/366 (5%)
Query: 423 IEGEKLRKKLHNTILELKGNIRVFCRVRPLLP--DDGVGADASIISYPTSLESQGRGIDL 480
++ E LR+ LHN + EL+GNIRV+CR+RP LP DD + I P ++ +G+ +
Sbjct: 10 VKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNI---EHIKVQPFDDDNGDQGMTI 66
Query: 481 IQ-NGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539
+ N Q PF FDK+F+ + + ++F E+ QL+QS+LDGY VCIFAYGQTGSGKTYTM+
Sbjct: 67 NRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLN 126
Query: 540 KPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599
+ G++P ++ IF L +GW +K+ +EIYNE I DLL R+G
Sbjct: 127 PGD-----GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLL---RSGAPSQ 178
Query: 600 TRTENGVPGKQYAIKHDAN-GNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEY 658
+ K + I+HD T+++++T + S + +L++A + RS T NE+
Sbjct: 179 ENNDRNADSK-HEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEH 237
Query: 659 SSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSS 718
SSRSH +F + + G NE T ++ QG+LNL+DLAGSERL+ S G+RL+ETQ+INKSLS
Sbjct: 238 SSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSC 297
Query: 719 LSDVIFALAKKED---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLR 775
L DVI AL + HIP+RNSKLTYLLQ L SKTLMFVNISP + + E++ SLR
Sbjct: 298 LGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLR 357
Query: 776 FAARVN 781
FA++VN
Sbjct: 358 FASKVN 363
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/371 (45%), Positives = 228/371 (61%), Gaps = 20/371 (5%)
Query: 423 IEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGID 479
I+ E +R+ LHN + EL+GNIRV+ R+RP L + +D S+I+ + + Q +
Sbjct: 41 IKEETVRRTLHNELQELRGNIRVYLRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVT 99
Query: 480 LIQN-GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538
IQN Q F FDK+F+ + + DVF E+ QLVQS+LDGY V IFAYGQTGSGKT+TM+
Sbjct: 100 KIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159
Query: 539 GKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSD 598
+ G+IP ++ IF L +GW +K+ A +EIYNE I DLL SD
Sbjct: 160 NPGD-----GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLR------SD 208
Query: 599 LTRTENGVPGKQYAIKHDANGNTHVSDLTI-VDVCSISEISSLLRQAAQSRSVGKTQMNE 657
E+ G ++ I+HD T V + S + +L++A + RS T NE
Sbjct: 209 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNE 268
Query: 658 YSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLS 717
+SSRSH +F + + G N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS
Sbjct: 269 HSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLS 328
Query: 718 SLSDVIFALAKKED---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSL 774
+L DVI AL + + HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SL
Sbjct: 329 ALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 388
Query: 775 RFAARVNACEI 785
RFA++VN+ +
Sbjct: 389 RFASKVNSTRL 399
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/367 (47%), Positives = 220/367 (59%), Gaps = 32/367 (8%)
Query: 439 LKGNIRVFCRVRPLLPDDGVGADASII---------SYPTSL------ESQGRGIDLIQN 483
LKGNIRVFCRVRP+LP + ++ PT L E +G
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 484 GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEA 543
+ F+FD+VF + Q +VF EI+ LVQSALDGY VCIFAYGQTGSGKT+TM G P
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 544 QEH-KGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRT 602
+GLIPR+L +F +Q L QGW + AS +EIYNET+RDLL+T G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQ----- 194
Query: 603 ENGVPGKQYAIKHDANGNTH--VSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSS 660
G + I+ G+ V++ V V E+ +LL A Q+R+V +T NE SS
Sbjct: 195 -----GGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249
Query: 661 RSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATG----DRLKETQAINKSL 716
RSH VF L+I G + + Q L+L+DLAGSERL A G +RL+ETQAIN SL
Sbjct: 250 RSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSL 309
Query: 717 SSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRF 776
S+L VI AL+ KE H+PYRNSKLTYLLQ LG +K LMFVNISP +V ESL SLRF
Sbjct: 310 STLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369
Query: 777 AARVNAC 783
A++VN C
Sbjct: 370 ASKVNQC 376
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 299 bits (765), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/368 (46%), Positives = 228/368 (61%), Gaps = 24/368 (6%)
Query: 428 LRKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGIDLIQN- 483
+R+ LHN + EL+GNIRV+CR+RP L + +D S+I+ + + Q + IQN
Sbjct: 1 MRRTLHNELQELRGNIRVYCRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVTKIQNT 59
Query: 484 GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEA 543
Q F FDK+F+ + + DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ +
Sbjct: 60 AQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD- 118
Query: 544 QEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTE 603
G+IP ++ IF L +GW +K+ +EIYNE I DLL SD E
Sbjct: 119 ----GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR------SDNNNKE 168
Query: 604 NGVPGKQYAIKHDANGNTHVSDLTIVDVCSISE---ISSLLRQAAQSRSVGKTQMNEYSS 660
+ G ++ I+HD T + +T V C + + +L++A + RS T NE+SS
Sbjct: 169 DTSIGLKHEIRHDQE--TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSS 226
Query: 661 RSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLS 720
RSH +F + + G N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS L
Sbjct: 227 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 286
Query: 721 DVIFALAKKED---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFA 777
DVI AL + + HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SLRFA
Sbjct: 287 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
Query: 778 ARVNACEI 785
++VN+ +
Sbjct: 347 SKVNSTRL 354
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 235/358 (65%), Gaps = 19/358 (5%)
Query: 437 LELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQG-RGIDLIQNGQK---FPFTFD 492
+ L+GNIRV+CRVRP L ++ D S I E++G + + + +N + + F FD
Sbjct: 1 MALRGNIRVYCRVRPPLLNEP--QDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFD 58
Query: 493 KVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPR 552
+F + +++F EI QLVQS+LDGY VCIFAYGQTGSGKTYTM+ + G+IP
Sbjct: 59 MIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD-----GMIPM 113
Query: 553 SLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYA 612
+L IF+ + L +GW ++M+ +EIYNETI DLL ++ + + + +++
Sbjct: 114 TLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN----IDEILDSQKHD 169
Query: 613 IKHDANG-NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF 671
I+HD T+++++T + + S S++ ++L++A++ RS T+ NE SSRSH VF + I
Sbjct: 170 IRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229
Query: 672 GVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED 731
G N T + QG LNL+DLAGSER++ S TG+RL+ETQ INKSLS L DVI+AL +
Sbjct: 230 GRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289
Query: 732 ---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIG 786
+IP+RNSKLTYLLQ L DSKTLMFVNI PD + E+L SLRFA++VN+ +I
Sbjct: 290 GKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 289 bits (739), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 230/366 (62%), Gaps = 37/366 (10%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDD-------GVGADASIISYPTSLESQGRGIDLI 481
RK+LHNT+++L+GNIRVFCR+RP L + D S + S+++Q +
Sbjct: 55 RKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL-QSIDAQAKS---- 109
Query: 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP 541
+ GQ+ F+FD+VF+ +SQ D+F +S L+QSALDGY +CIFAYGQTGSGKTYTM G P
Sbjct: 110 KMGQQI-FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP 168
Query: 542 EAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTR 601
E+ G+IPR+++ +F + + GW+++++A+ LEIYNE + DLLS +
Sbjct: 169 ES---VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-------- 217
Query: 602 TENGVPGKQYAIKHDANG--NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
K I+ N + +VS++T V + + L+ A +R+ T NE S
Sbjct: 218 -------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 270
Query: 660 SRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSL 719
SRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SLS L
Sbjct: 271 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 326
Query: 720 SDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++VI AL +K+DHIPYRNSKLT+LL P LG +SKTLMF+N+SP ES+ SLRFAA
Sbjct: 327 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 386
Query: 780 VNACEI 785
VN+C++
Sbjct: 387 VNSCKM 392
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 288 bits (736), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 230/366 (62%), Gaps = 37/366 (10%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDD-------GVGADASIISYPTSLESQGRGIDLI 481
RK+LHNT+++L+GNIRVFCR+RP L + D S + S+++Q +
Sbjct: 41 RKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL-QSIDAQAKS---- 95
Query: 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP 541
+ GQ+ F+FD+VF+ +SQ D+F +S L+QSALDGY +CIFAYGQTGSGKTYTM G P
Sbjct: 96 KMGQQI-FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP 154
Query: 542 EAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTR 601
E+ G+IPR+++ +F + + GW+++++A+ LEIYNE + DLLS +
Sbjct: 155 ES---VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-------- 203
Query: 602 TENGVPGKQYAIKHDANG--NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
K I+ N + +VS++T V + + L+ A +R+ T NE S
Sbjct: 204 -------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 256
Query: 660 SRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSL 719
SRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SLS L
Sbjct: 257 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 312
Query: 720 SDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++VI AL +K+DHIPYRNSKLT+LL P LG +SKTLMF+N+SP ES+ SLRFAA
Sbjct: 313 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 372
Query: 780 VNACEI 785
VN+C++
Sbjct: 373 VNSCKM 378
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 221/359 (61%), Gaps = 29/359 (8%)
Query: 439 LKGNIRVFCRVRPLLPDDGVGADAS---IISY--PTSLESQGRGIDLI-----QNGQKFP 488
LKGNIRVFCR+R + + +S II Y P + + + +I N
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 489 FTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKG 548
F FDK+F E S VF E+SQL+Q +LDG VC+FAYGQTGSGKT+TM + G
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM-----SHPTNG 486
Query: 549 LIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPG 608
+IP SL++IF + L +GW + ++ +EIYNE I DLL+ P
Sbjct: 487 MIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKID------------PN 534
Query: 609 KQYAIKHD-ANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFT 667
+Y IKHD G T V++++ +D+ S + ++L QA + RS T+ N++SSRSH +F
Sbjct: 535 TKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFI 594
Query: 668 LRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA 727
+ + G N T++ G LNLIDLAGSERL+ S A GDRLKETQAINKSLS L DVI +L
Sbjct: 595 IDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLN 654
Query: 728 KKE-DHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
K+ H+PYRNSKLTYLL+ LG +SKTLMFVNISP + + E++ SLRFA +VN I
Sbjct: 655 LKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 286 bits (731), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 230/366 (62%), Gaps = 37/366 (10%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDD-------GVGADASIISYPTSLESQGRGIDLI 481
RK+LHNT+++L+GNIRVFCR+RP L + D S + S+++Q +
Sbjct: 44 RKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL-QSIDAQAKS---- 98
Query: 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP 541
+ GQ+ F+FD+VF+ +SQ D+F +S L+QSALDGY +CIFAYGQ+GSGKTYTM G P
Sbjct: 99 KMGQQI-FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVP 157
Query: 542 EAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTR 601
E+ G+IPR+++ +F + + GW+++++A+ LEIYNE + DLLS +
Sbjct: 158 ES---VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-------- 206
Query: 602 TENGVPGKQYAIKHDANG--NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
K I+ N + +VS++T V + + L+ A +R+ T NE S
Sbjct: 207 -------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 259
Query: 660 SRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSL 719
SRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SLS L
Sbjct: 260 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 315
Query: 720 SDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++VI AL +K+DHIPYRNSKLT+LL P LG +SKTLMF+N+SP ES+ SLRFAA
Sbjct: 316 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 375
Query: 780 VNACEI 785
VN+C++
Sbjct: 376 VNSCKM 381
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 229/366 (62%), Gaps = 37/366 (10%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDD-------GVGADASIISYPTSLESQGRGIDLI 481
RK+LHNT+++L+GNIRVFCR+RP L + D S + S+++Q +
Sbjct: 44 RKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL-QSIDAQAKS---- 98
Query: 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP 541
+ GQ+ F+FD+VF+ +SQ D+F +S L+QSALDGY +CIFAYGQTGSGKTYTM G P
Sbjct: 99 KMGQQI-FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP 157
Query: 542 EAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTR 601
E+ G+IPR+++ +F + + GW+++++A+ LEIYNE + DLLS +
Sbjct: 158 ES---VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-------- 206
Query: 602 TENGVPGKQYAIKHDANG--NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
K I+ N + +VS++T V + + L+ A +R+ T NE S
Sbjct: 207 -------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 259
Query: 660 SRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSL 719
SRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ I +SLS L
Sbjct: 260 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSEL 315
Query: 720 SDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++VI AL +K+DHIPYRNSKLT+LL P LG +SKTLMF+N+SP ES+ SLRFAA
Sbjct: 316 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 375
Query: 780 VNACEI 785
VN+C++
Sbjct: 376 VNSCKM 381
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 229/366 (62%), Gaps = 37/366 (10%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDD-------GVGADASIISYPTSLESQGRGIDLI 481
RK+LHNT+++L+ NIRVFCR+RP L + D S + S+++Q +
Sbjct: 47 RKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL-QSIDAQAKS---- 101
Query: 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP 541
+ GQ+ F+FD+VF+ +SQ D+F +S L+QSALDGY +CIFAYGQTGSGKTYTM G P
Sbjct: 102 KMGQQI-FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP 160
Query: 542 EAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTR 601
E+ G+IPR+++ +F + + GW+++++A+ LEIYNE + DLLS +
Sbjct: 161 ES---VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-------- 209
Query: 602 TENGVPGKQYAIKHDANG--NTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
K I+ N + +VS++T V + + L+ A +R+ T NE S
Sbjct: 210 -------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 262
Query: 660 SRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSL 719
SRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SLS L
Sbjct: 263 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 318
Query: 720 SDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++VI AL +K+DHIPYRNSKLT+LL P LG +SKTLMF+N+SP ES+ SLRFAA
Sbjct: 319 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 378
Query: 780 VNACEI 785
VN+C++
Sbjct: 379 VNSCKM 384
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 218/355 (61%), Gaps = 24/355 (6%)
Query: 441 GNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGIDLIQN-GQKFPFTFDKVFN 496
GNIRV+CR+RP L + +D S+I+ + + Q + IQN Q F FDK+F+
Sbjct: 2 GNIRVYCRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 60
Query: 497 HEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQ 556
+ + DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ + G+IP ++
Sbjct: 61 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----GIIPSTISH 115
Query: 557 IFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHD 616
IF L +GW +K+ +EIYNE I DLL SD E+ G ++ I+HD
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR------SDNNNKEDTSIGLKHEIRHD 169
Query: 617 ANGNTHVSDLTIVDVCSISE---ISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGV 673
T + +T V C + + +L++A + RS T NE+SSRSH +F + + G
Sbjct: 170 QE--TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 227
Query: 674 NEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED-- 731
N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS L DVI AL + +
Sbjct: 228 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 287
Query: 732 -HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SLRFA++VN+ +
Sbjct: 288 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 219/357 (61%), Gaps = 24/357 (6%)
Query: 439 LKGNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGIDLIQN-GQKFPFTFDKV 494
++GNIRV+CR+RP L + +D S+I+ + + Q + IQN Q F FDK+
Sbjct: 1 MRGNIRVYCRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKI 59
Query: 495 FNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSL 554
F+ + + DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ + G+IP ++
Sbjct: 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----GIIPSTI 114
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
IF L +GW +K+ +EIYNE I DLL SD E+ G ++ I+
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR------SDNNNKEDTSIGLKHEIR 168
Query: 615 HDANGNTHVSDLTIVDVCSISE---ISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF 671
HD T + +T V C + + +L++A + RS T NE+SSRSH +F + +
Sbjct: 169 HDQE--TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 672 GVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED 731
G N T G LNL+DLAGS R++ S GDRL+ETQ INKSLS L DVI AL + +
Sbjct: 227 GSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS 286
Query: 732 ---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SLRFA++VN+ +
Sbjct: 287 TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 219/357 (61%), Gaps = 24/357 (6%)
Query: 439 LKGNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGIDLIQN-GQKFPFTFDKV 494
++GNIRV+CR+RP L + +D S+I+ + + Q + IQN Q F FDK+
Sbjct: 1 MRGNIRVYCRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKI 59
Query: 495 FNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSL 554
F+ + + DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ + G+IP ++
Sbjct: 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----GIIPSTI 114
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
IF L +GW +K+ +EIYNE I DLL SD E+ G ++ I+
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR------SDNNNKEDTSIGLKHEIR 168
Query: 615 HDANGNTHVSDLTIVDVCSISE---ISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF 671
HD T + +T V C + + +L++A + RS T NE+SSRSH +F + +
Sbjct: 169 HDQE--TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 672 GVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED 731
G N T G LNL+DLAGSER++ S GDRL+ETQ I KSLS L DVI AL + +
Sbjct: 227 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDS 286
Query: 732 ---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SLRFA++VN+ +
Sbjct: 287 TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 219/357 (61%), Gaps = 24/357 (6%)
Query: 439 LKGNIRVFCRVRPLLPDDGVGADASIIS---YPTSLESQGRGIDLIQN-GQKFPFTFDKV 494
++GNIRV+CR+RP L + +D S+I+ + + Q + IQN Q F FDK+
Sbjct: 1 MRGNIRVYCRIRPALKNLE-NSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKI 59
Query: 495 FNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSL 554
F+ + + DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ + G+IP ++
Sbjct: 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----GIIPSTI 114
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
IF L +GW +K+ +EIYNE I DLL SD E+ G ++ I+
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR------SDNNNKEDTSIGLKHEIR 168
Query: 615 HDANGNTHVSDLTIVDVCSISE---ISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF 671
HD T + +T V C + + +L++A + RS T NE+SS SH +F + +
Sbjct: 169 HDQE--TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLS 226
Query: 672 GVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED 731
G N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS L DVI AL + +
Sbjct: 227 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS 286
Query: 732 ---HIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
HIP+RNSKLTYLLQ L DSKTLMFVNISP S + E+L SLRFA++VN+ +
Sbjct: 287 TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 272 bits (695), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 213/349 (61%), Gaps = 24/349 (6%)
Query: 440 KGNIRVFCRVRPLLPDDGVGADAS-IISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHE 498
KGNIRV RVRP+ +DG G +A+ +++ +S I L+ G+ F DKVF+ +
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI---IHLLHKGKPVSFELDKVFSPQ 59
Query: 499 ASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIF 558
ASQQDVF E+ LV S +DG+ VCIFAYGQTG+GKTYTM G E+ G+ R+L+ +F
Sbjct: 60 ASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEG---TAENPGINQRALQLLF 116
Query: 559 QTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK--HD 616
Q W++ + S EIYNE +RDLL P ++ I+ D
Sbjct: 117 SEVQ-EKASDWEYTITVSAAEIYNEVLRDLLGKE--------------PQEKLEIRLCPD 161
Query: 617 ANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA 676
+G +V LT V S+ +I+ + +R+ T +NE+SSRSH + + + GV+ +
Sbjct: 162 GSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS 221
Query: 677 TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYR 736
T + G LNL+DLAGSER+ +SGA G RL+E Q INKSLS+L DVI AL ++ H+P+R
Sbjct: 222 TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFR 281
Query: 737 NSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
NSKLTYLLQ L DSKTLM V +SP + E+L SL+FA RV + E+
Sbjct: 282 NSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 222/375 (59%), Gaps = 37/375 (9%)
Query: 429 RKKLHNTILELKGNIRVFCRVRPLLPDDG--------VGADASIISYPTSLESQGRGIDL 480
RK+ +NTI ++KG IRV+CR+RPL + D + +P + + + I
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHI-- 58
Query: 481 IQNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK 540
+D+VF+ ASQ D+F + LVQSA+DGY VCIFAYGQTGSGKT+T+ G
Sbjct: 59 ----------YDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGH 108
Query: 541 PEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLT 600
+ + GL PR+ +++F + + + F ++A M+E+Y +T+ DLL A L
Sbjct: 109 ---ESNPGLTPRATKELFNILK-RDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKL- 163
Query: 601 RTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSS 660
IK D+ G V ++T + + ++ E+ +L + ++ R V T MNE SS
Sbjct: 164 -----------EIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESS 212
Query: 661 RSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLS 720
RSH + ++ I ++ T+ +G L+ +DLAGSER+ +SG+ G++LKE Q+INKSLS+L
Sbjct: 213 RSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALG 272
Query: 721 DVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
DVI AL+ HIPYRN KLT L+ LG ++KTLMFVN+SP ++ E+ SL +A+RV
Sbjct: 273 DVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRV 332
Query: 781 NACEIGVPSRQLTLK 795
+ PS+ ++ K
Sbjct: 333 RTI-VNDPSKHISSK 346
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 222/369 (60%), Gaps = 43/369 (11%)
Query: 438 ELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGID------LIQNGQKFPFTF 491
++KG IRV+CR+RPL + + + + I R +D L ++ + +
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAI----------RSVDEFTVEHLWKDDKAKQHMY 51
Query: 492 DKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIP 551
D+VF+ A+Q DVF + LVQSA+DGY VCIFAYGQTGSGKT+T+ G A + GL P
Sbjct: 52 DRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG---ADSNPGLTP 108
Query: 552 RSLEQIFQ-----TSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGV 606
R++ ++F+ +++F F ++A M+E+Y +T+ DLL +A L
Sbjct: 109 RAMSELFRIMKKDSNKF------SFSLKAYMVELYQDTLVDLLLPKQAKRLKLD------ 156
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
IK D+ G V ++T+V + + E+ +++++ ++ R T MNE SSRSH +
Sbjct: 157 ------IKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIV 210
Query: 667 TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFAL 726
++ I N T+ +G L+ +DLAGSER+ +SG+ G++LKE Q+INKSLS+L DVI AL
Sbjct: 211 SVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL 270
Query: 727 AKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIG 786
+ HIPYRN KLT L+ LG ++KTLMFVNISP ++ E+ SL +A+RV + +
Sbjct: 271 SSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI-VN 329
Query: 787 VPSRQLTLK 795
PS+ ++ K
Sbjct: 330 DPSKNVSSK 338
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 178/297 (59%), Gaps = 23/297 (7%)
Query: 489 FTFDKVFNHEASQQDVFLE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHK 547
FTFD V++ A Q +++ E LV S L G+ IFAYGQTG+GKTYTM G E +
Sbjct: 70 FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR 129
Query: 548 GLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVP 607
G+IP S + IF + Q ++ ++AS LEIY E IRDLLS +
Sbjct: 130 GVIPNSFDHIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT------------- 174
Query: 608 GKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFT 667
K+ +K + +V DL+ S+ EI ++ Q+RSVG T MNE+SSRSH +F
Sbjct: 175 -KRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFV 233
Query: 668 LRI----FGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVI 723
+ I G++ +V G LNL+DLAGSER +++GA G+RLKE IN SLS+L +VI
Sbjct: 234 ITIECSEVGLDGENHIRV-GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292
Query: 724 FALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
AL K HIPYR+SKLT LLQ LG ++KT+M N+ P S +V E+L +LR+A R
Sbjct: 293 SALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 349
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 188/339 (55%), Gaps = 26/339 (7%)
Query: 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQ 501
NI+V CR RPL + D I + +G D + K P+ FD+VF SQ
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF--------QGEDTVVIASK-PYAFDRVFQSSTSQ 58
Query: 502 QDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQT 560
+ V+ + ++ +V+ L+GY IFAYGQT SGKT+TM GK E G+IPR ++ IF
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 561 SQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGN 620
+ + + +F ++ S EIY + IRDLL S+ ++ D N
Sbjct: 119 I-YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT---------------NLSVHEDKNRV 162
Query: 621 THVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQ 680
+V T VCS E+ + + +R V T MNE+SSRSH +F + + N TEQ+
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 681 VQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKL 740
+ G L L+DLAGSE++S++GA G L E + INKSLS+L +VI ALA+ ++PYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 741 TYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
T +LQ LG + +T + + SP S + E+ +L F R
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 173/294 (58%), Gaps = 19/294 (6%)
Query: 489 FTFDKVFNHEASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP-EAQEH 546
FTFD+VF+ Q D+F I V L+GY +FAYGQTG+GK+YTMMG + +
Sbjct: 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 108
Query: 547 KGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGV 606
+G+IPR +EQIF TS ++ ++ S +EIY E IRDLL+ + +
Sbjct: 109 RGVIPRIVEQIF-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ----------NDNL 157
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
P + + N +V L + V S+ E+ ++R+ +R+V T MN+ SSRSH +F
Sbjct: 158 P-----VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIF 212
Query: 667 TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFAL 726
+ I N T G L L+DLAGSE++ ++GA+G L+E + INKSLS+L VI AL
Sbjct: 213 VITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272
Query: 727 A-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
K H+PYR+SKLT +LQ LG +S+T + +N SP S + E+L +LRF R
Sbjct: 273 TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMR 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 188/339 (55%), Gaps = 26/339 (7%)
Query: 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQ 501
NI+V CR RPL + D I + +G D + K P+ FD+VF SQ
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF--------QGEDTVVIASK-PYAFDRVFQSSTSQ 58
Query: 502 QDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQT 560
+ V+ + ++ +V+ L+GY IFAYGQT SGKT+TM GK E G+IPR ++ IF
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 561 SQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGN 620
+ + + +F ++ S EIY + IRDLL S+ ++ D N
Sbjct: 119 I-YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT---------------NLSVHEDKNRV 162
Query: 621 THVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQ 680
+V T VCS E+ + + +R V T MNE+SSRSH +F + + N TEQ+
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 681 VQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKL 740
+ G L L+DLAGSE++S++GA G L E + INKSLS+L +VI ALA+ ++PYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 741 TYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
T +LQ LG + +T + + SP S + E+ +L F R
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 187/339 (55%), Gaps = 26/339 (7%)
Query: 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQ 501
NI+V CR RPL + D + + +G D + K P+ FD+VF SQ
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKF--------QGEDTVMIASK-PYAFDRVFQSSTSQ 58
Query: 502 QDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQT 560
+ V+ + ++ +V+ L+GY IFAYGQT SGK +TM GK E G+IPR ++ IF
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 561 SQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGN 620
+ + + +F ++ S EIY + IRDLL S+ ++ D N
Sbjct: 119 I-YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT---------------NLSVHEDKNRV 162
Query: 621 THVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQ 680
+V T VCS E+ + + +R V T MNE+SSRSH +F + + N TEQ+
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 681 VQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKL 740
+ G L L+DLAGSE++S++GA G L E + INKSLS+L +VI ALA+ ++PYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 741 TYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
T +LQ LG + +T + + SP S + E+ +L F R
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 484 GQKFPFTFDKVF-------NHEASQQDVFLEI--SQLVQSALDGYKVCIFAYGQTGSGKT 534
GQ F +D F + + QD+ + ++Q+A DGY CIFAYGQTGSGK+
Sbjct: 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKS 107
Query: 535 YTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRA 594
YTMMG + GLIPR +F+ +Q + FK++ S +EIYNE +RDLL +
Sbjct: 108 YTMMG---TADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD-PKG 163
Query: 595 GGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQ 654
L E+ V G +V L+ + V S +I SL+ + +SR+V T
Sbjct: 164 SRQTLKVREHSVLGP------------YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATN 211
Query: 655 MNEYSSRSHFVF----TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQ 710
MNE SSRSH VF T ++ V T + G L+L+DLAGSER +++GA GDRLKE
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGS 271
Query: 711 AINKSLSSLSDVIFALA------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDS 764
INKSL++L VI ALA K +PYR+S LT+LL+ LG +SKT M +SP +
Sbjct: 272 NINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAA 331
Query: 765 PSVGESLCSLRFAAR 779
+ E+L +LR+A R
Sbjct: 332 DNYDETLSTLRYADR 346
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 193/372 (51%), Gaps = 56/372 (15%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFP------FTFDKVFN 496
++V R RPL + I++ L G ++N + P FTFD V++
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKL-----GQVTLRNPRAAPGELPKTFTFDAVYD 77
Query: 497 HEASQQDVFLE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLE 555
+ Q D++ E + L+ S L G+ +FAYGQTG+GKTYTM G E +G+IP + E
Sbjct: 78 ASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFE 137
Query: 556 QIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKH 615
IF + Q ++ ++AS LEIY E IRDLLS PGK+ +K
Sbjct: 138 HIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKE--------------PGKRLELKE 181
Query: 616 DANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNE 675
+ ++ DL+ ++ EI ++ Q+R+VG T MNE SSRSH +F + +
Sbjct: 182 NPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSER 241
Query: 676 ATEQQVQ---GVLNLIDLAGSERLSRSG---ATG---------------------DRLKE 708
++ Q G LNL+DLAGSER +++G A G +R KE
Sbjct: 242 GSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKE 301
Query: 709 TQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSV 767
IN SLS+L +VI ALA + HIPYR+SKLT LLQ LG ++KT+M + P S S
Sbjct: 302 ASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSY 361
Query: 768 GESLCSLRFAAR 779
ESL +LRFA R
Sbjct: 362 DESLSTLRFANR 373
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 190/359 (52%), Gaps = 53/359 (14%)
Query: 442 NIRVFCRVRPL----LPDDGVG------ADASIISYPTSLESQGRGIDLIQNGQKFP--F 489
NI+V R RPL ++ + A A +I P E +K P F
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSA------TQAKKVPRTF 58
Query: 490 TFDKVFNHEASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKG 548
TFD V++ + +F L+ + L+G+ IFAYGQTG+GKT+TM G +E G
Sbjct: 59 TFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN---KEEPG 115
Query: 549 LIPRSLEQIF------QTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRT 602
IP S + +F ++Q LV G S LE+YNE IRDL+ +
Sbjct: 116 AIPNSFKHLFDAINSSSSNQNFLVIG-------SYLELYNEEIRDLIKNN---------- 158
Query: 603 ENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRS 662
+ +K D +V L++ V + +E+S+L+ + +R V TQMN+ SSRS
Sbjct: 159 ------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRS 212
Query: 663 HFVFTLRI--FGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLS 720
H +F +RI V E E G LNL+DLAGSER S++GATG+ L E IN SLS+L
Sbjct: 213 HSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALG 272
Query: 721 DVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
VI L + HIPYR+SKLT LLQ LG +SKTLM NISP S + E++ +LR+A R
Sbjct: 273 LVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADR 331
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 189/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V RVRP L + A + + S P E R L + +TFD VF
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 138 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 195 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 240 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 184/339 (54%), Gaps = 24/339 (7%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQ 502
I+V CR RPL + ++ +P ++E + I K + FDKVF ASQ+
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEE-----NCISIAGKV-YLFDKVFKPNASQE 66
Query: 503 DVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTS 561
V+ E ++ +V L GY IFAYGQT SGKT+TM G +G+IPR + IF
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHI 126
Query: 562 QFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNT 621
+ V +F ++ S EIY + IRDLL S+ ++ D N
Sbjct: 127 YAMEVN-LEFHIKVSYYEIYMDKIRDLLDVSKV---------------NLSVHEDKNRVP 170
Query: 622 HVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQV 681
+V T V S ++ ++ + +R + T MNE+SSRSH VF + + N ++++
Sbjct: 171 YVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKL 230
Query: 682 QGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKL 740
G L L+DLAGSE++S++GA G L E + INKSLS+L +VI ALA + HIPYR+SKL
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKL 290
Query: 741 TYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
T +LQ LG +++T + + SP S + E+ +L F R
Sbjct: 291 TRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRR 329
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 138 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 195 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 240 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 138 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 195 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 240 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 138 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 195 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 240 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 137 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 194 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 238
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 239 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 297
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 298 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 354
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 129 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 186 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 230
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 231 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 289
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 290 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 346
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 138 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 195 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 240 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 140 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 197 ---------------IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 241
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 242 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 300
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 301 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 357
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 442 NIRVFCRVRPL-LPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEAS 500
NI+V R RP L + A + + P E R L + +TFD VF
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 501 QQDVFLEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH--------KGLIP 551
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ E G+IP
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 552 RSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS-----RAGGSDLTRTENGV 606
R+L QIF+ L G +F ++ S+LEIYNE + DLL+ S R D R + GV
Sbjct: 123 RTLHQIFEK---LTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
+ L + V + E+ +L + A R+ T MN YSSRSH VF
Sbjct: 180 I---------------IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 224
Query: 667 TLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDV 722
++ I + E T E+ V+ G LNL+DLAGSE + RSGA R +E IN+SL +L V
Sbjct: 225 SVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 283
Query: 723 IFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
I AL ++ H+PYR SKLT +LQ LG ++T + ISP S ++ E+L +L +A R
Sbjct: 284 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 340
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 181/319 (56%), Gaps = 46/319 (14%)
Query: 489 FTFD-KVFNHE-------ASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMG 539
F+FD ++H ASQ+ V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMG
Sbjct: 66 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 125
Query: 540 KPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599
K E ++ +G+IP+ E +F + ++ S +EIY E +RDLL+ G +L
Sbjct: 126 KQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG--NL 182
Query: 600 TRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
E+ + G +V DL+ + V S ++I L+ ++R+V T MNE S
Sbjct: 183 RVREHPLLGP------------YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 230
Query: 660 SRSHFVFTLRIFG-------VNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
SRSH VF + IF N TE+ + ++L+DLAGSER +GA G RLKE I
Sbjct: 231 SRSHAVFNI-IFTQKRHDAETNITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANI 287
Query: 713 NKSLSSLSDVIFALAKKE------------DHIPYRNSKLTYLLQPCLGRDSKTLMFVNI 760
NKSL++L VI ALA+ + D IPYR+S LT+LL+ LG +S+T M +
Sbjct: 288 NKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 347
Query: 761 SPDSPSVGESLCSLRFAAR 779
SP + E+L +LR+A R
Sbjct: 348 SPADINYDETLSTLRYADR 366
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 181/319 (56%), Gaps = 46/319 (14%)
Query: 489 FTFD-KVFNHE-------ASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMG 539
F+FD ++H ASQ+ V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMG
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 540 KPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599
K E ++ +G+IP+ E +F + ++ S +EIY E +RDLL+ G +L
Sbjct: 110 KQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG--NL 166
Query: 600 TRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
E+ + G +V DL+ + V S ++I L+ ++R+V T MNE S
Sbjct: 167 RVREHPLLGP------------YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 214
Query: 660 SRSHFVFTLRIFG-------VNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
SRSH VF + IF N TE+ + ++L+DLAGSER +GA G RLKE I
Sbjct: 215 SRSHAVFNI-IFTQKRHDAETNITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANI 271
Query: 713 NKSLSSLSDVIFALAKKE------------DHIPYRNSKLTYLLQPCLGRDSKTLMFVNI 760
NKSL++L VI ALA+ + D IPYR+S LT+LL+ LG +S+T M +
Sbjct: 272 NKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 331
Query: 761 SPDSPSVGESLCSLRFAAR 779
SP + E+L +LR+A R
Sbjct: 332 SPADINYDETLSTLRYADR 350
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 181/319 (56%), Gaps = 46/319 (14%)
Query: 489 FTFD-KVFNHE-------ASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMG 539
F+FD ++H ASQ+ V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMG
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 540 KPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599
K E ++ +G+IP+ E +F + ++ S +EIY E +RDLL+ G +L
Sbjct: 110 KQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG--NL 166
Query: 600 TRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
E+ + G +V DL+ + V S ++I L+ ++R+V T MNE S
Sbjct: 167 RVREHPLLGP------------YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 214
Query: 660 SRSHFVFTLRIFG-------VNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
SRSH VF + IF N TE+ + ++L+DLAGSER +GA G RLKE I
Sbjct: 215 SRSHAVFNI-IFTQKRHDAETNITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANI 271
Query: 713 NKSLSSLSDVIFALAKKE------------DHIPYRNSKLTYLLQPCLGRDSKTLMFVNI 760
NKSL++L VI ALA+ + D IPYR+S LT+LL+ LG +S+T M +
Sbjct: 272 NKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 331
Query: 761 SPDSPSVGESLCSLRFAAR 779
SP + E+L +LR+A R
Sbjct: 332 SPADINYDETLSTLRYADR 350
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 180/319 (56%), Gaps = 46/319 (14%)
Query: 489 FTFD-KVFNHE-------ASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMG 539
F+FD ++H ASQ+ V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMG
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 540 KPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599
K E ++ +G+IP+ E +F + ++ S +EIY E +RDLL+ G +L
Sbjct: 110 KQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG--NL 166
Query: 600 TRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYS 659
E+ + G +V DL+ + V S ++I L+ + R+V T MNE S
Sbjct: 167 RVREHPLLGP------------YVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETS 214
Query: 660 SRSHFVFTLRIFG-------VNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
SRSH VF + IF N TE+ + ++L+DLAGSER +GA G RLKE I
Sbjct: 215 SRSHAVFNI-IFTQKRHDAETNITTEKVSK--ISLVDLAGSERADSTGAKGTRLKEGANI 271
Query: 713 NKSLSSLSDVIFALAKKE------------DHIPYRNSKLTYLLQPCLGRDSKTLMFVNI 760
NKSL++L VI ALA+ + D IPYR+S LT+LL+ LG +S+T M +
Sbjct: 272 NKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 331
Query: 761 SPDSPSVGESLCSLRFAAR 779
SP + E+L +LR+A R
Sbjct: 332 SPADINYDETLSTLRYADR 350
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/354 (36%), Positives = 189/354 (53%), Gaps = 36/354 (10%)
Query: 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQ 501
NI+V+ RVRPL + A ++ E R + + FTFD+ F E+ Q
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTR--HTLDSKLTKKFTFDRSFGPESKQ 81
Query: 502 QDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQ--------EHKGLIPR 552
DV+ + +S L++ L+GY +FAYGQTG+GKT+TM+G A+ G+IPR
Sbjct: 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPR 141
Query: 553 SLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYA 612
+L +F + + V+ + M+ S LE+YNE + DLLST D T+
Sbjct: 142 ALSHLFDELRMMEVE---YTMRISYLELYNEELCDLLSTD-----DTTKIR--------- 184
Query: 613 IKHDAN--GNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRI 670
I D+ G+ + L + V S ++ LL + + R T MN SSRSH VF++ +
Sbjct: 185 IFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVV 244
Query: 671 F----GVNEATEQQVQGVLNLIDLAGSERLSRSG-ATGDRLKETQAINKSLSSLSDVIFA 725
G+ E + G LNL+DLAGSE +S++G G R++ET IN+SL +L VI A
Sbjct: 245 HIRENGI-EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITA 303
Query: 726 LAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
L + H+PYR SKLT LLQ LG +KT + ISP + E+L +L +A R
Sbjct: 304 LVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHR 357
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 169/330 (51%), Gaps = 61/330 (18%)
Query: 489 FTFDKVF-------NHEASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGK 540
FTFDK F H A+Q+ V+ + + + +GY CIFAYGQTGSGK+YTMMG
Sbjct: 98 FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157
Query: 541 PEAQEHKGLIPRSLEQIFQ--TSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSD 598
P + GLIPR+ E +FQ S + ++ S E+YNE +RDLL+
Sbjct: 158 P---DQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPV------ 208
Query: 599 LTRTENGVPGKQ---YAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQM 655
VP K ++ +V DLT V V + EI +R SR+V T+M
Sbjct: 209 -------VPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKM 261
Query: 656 NEYSSRSHFVFTLRI------FGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKET 709
N+ SSRSH VFT+ + ++ TE+ + + L+DLAGSER + ATG RL+E
Sbjct: 262 NDTSSRSHAVFTIMLKQIHHDLETDDTTERSSR--IRLVDLAGSERAKSTEATGQRLREG 319
Query: 710 QAINKSLSSLSDVIFALAKKEDH----------------------IPYRNSKLTYLLQPC 747
INKSL++L VI ALA + +PYR+S LT+LL+
Sbjct: 320 SNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDS 379
Query: 748 LGRDSKTLMFVNISPDSPSVGESLCSLRFA 777
LG +SKT M ISP E+L +LR+A
Sbjct: 380 LGGNSKTAMIACISPT--DYDETLSTLRYA 407
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 196/348 (56%), Gaps = 36/348 (10%)
Query: 440 KGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEA 499
+G + V RVRPL + + + + + T + +G K F FD+VF+
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTD-----NNVIYQVDGSK-SFNFDRVFHGNE 56
Query: 500 SQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIF 558
+ ++V+ EI+ ++ SA+ GY IFAYGQT SGKTYTMMG +++H G+IPR++ IF
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG---SEDHLGVIPRAIHDIF 113
Query: 559 QTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDAN 618
Q + + +F ++ S +EIYNETI DLL ++ K I+ D N
Sbjct: 114 QKIKKFPDR--EFLLRVSYMEIYNETITDLLCGTQ-------------KMKPLIIREDVN 158
Query: 619 GNTHVSDLTIVDVCSISEIS-SLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT 677
N +V+DLT +V SE++ + + +SR G+T+MN+ SSRSH +F + + +
Sbjct: 159 RNVYVADLT-EEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGE 217
Query: 678 EQQVQGV-----LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE-- 730
+G LNL+DLAGSER +++GA G RLKE IN+SL L VI L+ +
Sbjct: 218 PSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG 277
Query: 731 DHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAA 778
I YR+SKLT +LQ LG ++KT + I+P S E+L +L+FA+
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFAS 323
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 176/310 (56%), Gaps = 20/310 (6%)
Query: 476 RGIDLIQNGQK-FPFTFDKVFNHEASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGK 533
RG+ + N Q + F D V H+ASQ V+ +++ +V ALDGY I YGQTG+GK
Sbjct: 62 RGV--VNNQQTDWSFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGK 118
Query: 534 TYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSR 593
TYTMMG E +H+G++PR+L+Q+F+ + ++ S LEIYNE++ DLLST
Sbjct: 119 TYTMMGATENYKHRGILPRALQQVFRMIEERPTHA--ITVRVSYLEIYNESLFDLLSTLP 176
Query: 594 AGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKT 653
G +T I + G + L++ + SLL + +R +
Sbjct: 177 YVGPSVT---------PMTIVENPQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASH 226
Query: 654 QMNEYSSRSHFVFTLRIFGVNE--ATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA 711
MN+ SSRSH +FT+ + + + E+ + +NL+DLAGSERL +SG+ G LKE
Sbjct: 227 TMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATY 286
Query: 712 INKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGES 770
INKSLS L I AL +K DHIP+R KLT+ L+ LG + ++ NI ++ + E+
Sbjct: 287 INKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEET 346
Query: 771 LCSLRFAARV 780
L SLRFA+R+
Sbjct: 347 LSSLRFASRM 356
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 187/354 (52%), Gaps = 41/354 (11%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQ 502
+RV RVRPLLP + + S + L GR + G+ F F V +A Q+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL---GR----VTLGRDRHFGFHVVLAEDAGQE 65
Query: 503 DVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEA---QEHKGLIPRSLEQIF 558
V+ Q L+++ +G+ +FAYGQTGSGKTYTM A ++ +G++PR++ + F
Sbjct: 66 AVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAF 125
Query: 559 QTSQFLLVQG--WKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHD 616
+ L+ + + S LE+Y E RDLL E G + ++ D
Sbjct: 126 K----LIDENDLLDCLVHVSYLEVYKEEFRDLL-------------EVGTASRDIQLRED 168
Query: 617 ANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA 676
GN + + VDV + E+ SLL +R G T +N SSRSH VFT+ + A
Sbjct: 169 ERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRA 228
Query: 677 TE--------QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA- 727
Q + + +DLAGSER+ ++G+TG+RLKE+ IN SL +L +VI AL
Sbjct: 229 PSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGD 288
Query: 728 --KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++ HIPYR+SK+T +L+ LG ++KT+M +SP S E+L +L +A+R
Sbjct: 289 PQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 184/342 (53%), Gaps = 26/342 (7%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQK-FPFTFDKVFNHEASQ 501
+RV R+RP + DG A AS ++S I +N Q+ + FD + ++Q
Sbjct: 23 VRVAVRLRPFV--DGT-AGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQ 79
Query: 502 QDVFL-EISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQT 560
QD++ + +++ L+G + AYG TG+GKT+TM+G PE G+IPR+L + Q
Sbjct: 80 QDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE---QPGVIPRALMDLLQL 136
Query: 561 SQFLLVQG--WKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDAN 618
++ +G W + S LEIY E + DLL + DL I+ D
Sbjct: 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG---DLV------------IREDCR 181
Query: 619 GNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNE-AT 677
GN + L+ + S ++ A+++R+VG T++N+ SSRSH V +++ A
Sbjct: 182 GNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP 241
Query: 678 EQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRN 737
+Q +G L LIDLAGSE R+G G RLKE+ AIN SL L V+ AL + +PYR+
Sbjct: 242 FRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRD 301
Query: 738 SKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
SKLT LLQ LG + +++ NI+P+ +++ +L FAAR
Sbjct: 302 SKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 185/354 (52%), Gaps = 41/354 (11%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQ 502
+RV RVRPLLP + + S + L GR + G+ F F V +A Q+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL---GR----VTLGRDRHFGFHVVLAEDAGQE 65
Query: 503 DVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEA---QEHKGLIPRSLEQIF 558
V+ Q L+++ +G+ +FAYGQTGSGKTYTM A ++ +G++PR++ + F
Sbjct: 66 AVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAF 125
Query: 559 QTSQFLLVQG--WKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHD 616
+ L+ + + S LE+Y E RDLL E G + ++ D
Sbjct: 126 K----LIDENDLLDCLVHVSYLEVYKEEFRDLL-------------EVGTASRDIQLRED 168
Query: 617 ANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA 676
GN + + VDV + E+ SLL +R G T +N SSRSH VFT+ + A
Sbjct: 169 ERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRA 228
Query: 677 TE--------QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA- 727
Q + + +DLAGSER+ ++G+TG+ KE+ IN SL +L +VI AL
Sbjct: 229 PSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGD 288
Query: 728 --KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
++ +IPYR+SK+T +L+ LG ++KT+M +SP S E+L +L +A+R
Sbjct: 289 PQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 162/299 (54%), Gaps = 29/299 (9%)
Query: 489 FTFDKVFNHEASQQDVFLEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHK 547
F FD VF+ ++Q +VF ++ +++S L+GY + AYG TG+GKT+TM+G + +
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG---SADEP 130
Query: 548 GLIPRSLEQIFQTSQFLLVQGWKFKMQA-SMLEIYNETIRDLLSTSRAGGSDLTRTENGV 606
G++ ++ +++ ++ K A S LE+YNE IRDLL V
Sbjct: 131 GVMYLTMLHLYKCMD--EIKEEKICSTAVSYLEVYNEQIRDLL----------------V 172
Query: 607 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF 666
A++ D V LT+ S EI LL ++R+ T MN SSRSH VF
Sbjct: 173 NSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVF 232
Query: 667 --TLRIFGVNEATEQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVI 723
LR + Q V+ ++LIDLAGSER S SGA G R E IN+SL +L +VI
Sbjct: 233 QIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVI 292
Query: 724 FALA---KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 779
ALA +K HIPYRNSKLT LL+ LG + +T+M +SP S ++ +L++A R
Sbjct: 293 NALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 25/256 (9%)
Query: 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQ 501
+I+V CR RPL + + D I + +G + + GQ P+ FD+V +Q
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKF--------KGEETVVIGQGKPYVFDRVLPPNTTQ 58
Query: 502 QDVFLEIS-QLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQT 560
+ V+ + Q+V+ L+GY IFAYGQT SGKT+TM GK + G+IPR IF
Sbjct: 59 EQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFD- 117
Query: 561 SQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGN 620
+ + + +F ++ S EIY + IRDLL S+ A+ D N
Sbjct: 118 HIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT---------------NLAVHEDKNRV 162
Query: 621 THVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQ 680
+V T V S E+ ++ + +R V T MNE+SSRSH +F + I N TE++
Sbjct: 163 PYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKK 222
Query: 681 VQGVLNLIDLAGSERL 696
+ G L L+DLAGSE++
Sbjct: 223 LSGKLYLVDLAGSEKV 238
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 163/349 (46%), Gaps = 33/349 (9%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTS----LESQGRGIDLIQNGQKFPFTFDKVFNHE 498
I V R RPL + + +IS P+ + +DL + + F FD F+
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 499 ASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH---KGLIPRSL 554
AS + V+ LVQ+ +G K FAYGQTGSGKT+TM G + KG+ +
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
+F + ++ + EIYN + DLL+ + +
Sbjct: 193 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK----------------AKLRVL 236
Query: 615 HDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVN 674
D+ V L V ++ ++ + R+ G+T N SSRSH F + +
Sbjct: 237 EDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL---- 292
Query: 675 EATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA--INKSLSSLSDVIFALAKKEDH 732
T+ ++ G +L+DLAG+ER + + ++ DR + INKSL +L + I AL + + H
Sbjct: 293 -RTKGRLHGKFSLVDLAGNERGADT-SSADRQTRMEGAEINKSLLALKECIRALGQNKAH 350
Query: 733 IPYRNSKLTYLLQ-PCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
P+R SKLT +L+ +G +S+T M ISP S +L +LR+A RV
Sbjct: 351 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 155/335 (46%), Gaps = 48/335 (14%)
Query: 461 DASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGY 519
+ S++ +P S G+ + + QN F FD F SQ +++ I LV L+G+
Sbjct: 41 EPSVVQFPP--WSDGKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 520 KVCIFAYGQTGSGKTYTMMGKPEAQ---EHKGLIPRSLEQIFQTSQFLLVQGWK------ 570
+ AYGQTG+GK+Y+M P + EH G++PR+L IF+ V +
Sbjct: 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFER-----VTARQENNKDA 149
Query: 571 FKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVD 630
++ AS +EIYNE DLL ++ H T +
Sbjct: 150 IQVYASFIEIYNEKPFDLLGST---------------------PHMPMVAARCQRCTCLP 188
Query: 631 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDL 690
+ S +++ +L ++R V T MN SSRSH + T+ + + +N++DL
Sbjct: 189 LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV------KSKTHHSRMNIVDL 242
Query: 691 AGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGR 750
AGSE + R+G G +E IN L S++ V+ ++A IPYR+S LT +LQ L
Sbjct: 243 AGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA 302
Query: 751 DSKTLMFVNISPDSPSVGESLCSLRFAARVNACEI 785
S ISP + E+L +LRF A +
Sbjct: 303 QSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 153/327 (46%), Gaps = 48/327 (14%)
Query: 461 DASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGY 519
+ S++ +P S G+ + + QN F FD F SQ +++ I LV L+G+
Sbjct: 41 EPSVVQFPP--WSDGKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 520 KVCIFAYGQTGSGKTYTMMGKPEAQ---EHKGLIPRSLEQIFQTSQFLLVQGWK------ 570
+ AYGQTG+GK+Y+M P + EH G++PR+L IF+ V +
Sbjct: 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFER-----VTARQENNKDA 149
Query: 571 FKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVD 630
++ AS +EIYNE DLL ++ H T +
Sbjct: 150 IQVYASFIEIYNEKPFDLLGST---------------------PHMPMVAARCQRCTCLP 188
Query: 631 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDL 690
+ S +++ +L ++R V T MN SSRSH + T+ + + +N++DL
Sbjct: 189 LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV------KSKTHHSRMNIVDL 242
Query: 691 AGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGR 750
AGSE + R+G G +E IN L S++ V+ ++A IPYR+S LT +LQ L
Sbjct: 243 AGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA 302
Query: 751 DSKTLMFVNISPDSPSVGESLCSLRFA 777
S ISP + E+L +LRF
Sbjct: 303 QSYLTFLACISPHQCDLSETLSTLRFG 329
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 163/349 (46%), Gaps = 33/349 (9%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTS----LESQGRGIDLIQNGQKFPFTFDKVFNHE 498
I V R RPL + + +IS P+ + +DL + + F FD F+
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 499 ASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH---KGLIPRSL 554
AS + V+ LVQ+ +G K FAYGQTGSGKT+TM G + KG+ +
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
+F + ++ + EIYN + DLL+ + +
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK----------------AKLRVL 164
Query: 615 HDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVN 674
D+ V L V ++ ++ + R+ G+T N SSRSH F + +
Sbjct: 165 EDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL---- 220
Query: 675 EATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA--INKSLSSLSDVIFALAKKEDH 732
T+ ++ G +L+DLAG+ER + + ++ DR + INKSL +L + I AL + + H
Sbjct: 221 -RTKGRLHGKFSLVDLAGNERGADT-SSADRQTRMEGAEINKSLLALKECIRALGQNKAH 278
Query: 733 IPYRNSKLTYLLQ-PCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
P+R SKLT +L+ +G +S+T M ISP S +L +LR+A RV
Sbjct: 279 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 164/348 (47%), Gaps = 31/348 (8%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTS----LESQGRGIDLIQNGQKFPFTFDKVFNHE 498
I V R RPL + D +I+ P+ + + +DL + + F FD F+
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDS 150
Query: 499 ASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH---KGLIPRSL 554
A + V+ LV++ + FAYGQTGSGKT+TM G + KG+ +
Sbjct: 151 APNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAA 210
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
+F + + + ++ A+ EIY+ + DLL+ + +
Sbjct: 211 RDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRK----------------TKLRVL 254
Query: 615 HDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVN 674
D V L +V + ++ L+ R+ G+T N +SSRSH VF + +
Sbjct: 255 EDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL---- 310
Query: 675 EATEQQVQGVLNLIDLAGSERLSRSGATGDRLK-ETQAINKSLSSLSDVIFALAKKEDHI 733
+ ++ G +LIDLAG+ER + + + + + E INKSL +L + I AL + + H
Sbjct: 311 -RRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHT 369
Query: 734 PYRNSKLTYLLQPC-LGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
P+R SKLT +L+ +G +S+T M ISP S +L +LR+A RV
Sbjct: 370 PFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 162/349 (46%), Gaps = 33/349 (9%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTS----LESQGRGIDLIQNGQKFPFTFDKVFNHE 498
I V R RPL + + +IS P+ + +DL + + F FD F+
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 499 ASQQDVF-LEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEH---KGLIPRSL 554
AS + V+ LVQ+ +G K FAYGQTGSGKT+TM G + KG+ +
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
+F + ++ + EIYN + DLL+ + +
Sbjct: 173 RDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK----------------AKLRVL 216
Query: 615 HDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVN 674
D V L V S ++ ++ + R+ G+T N SSRSH F + +
Sbjct: 217 EDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL---- 272
Query: 675 EATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA--INKSLSSLSDVIFALAKKEDH 732
+ ++ G +L+DLAG+ER + + ++ DR + INKSL +L + I AL + + H
Sbjct: 273 -RAKGRMHGKFSLVDLAGNERGADT-SSADRQTRMEGAEINKSLLALKECIRALGQNKAH 330
Query: 733 IPYRNSKLTYLLQ-PCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
P+R SKLT +L+ +G +S+T M ISP S +L +LR+A RV
Sbjct: 331 TPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 170/351 (48%), Gaps = 37/351 (10%)
Query: 443 IRVFCRVRPLLPDDGVGADASIISYPTS----LESQGRGIDLIQNGQKFPFTFDKVFNHE 498
I+V R RPL + D+ II+ + ++ +D+ + ++ F DKVF+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 499 ASQQDVFLE-ISQLVQSALDGYKVC-IFAYGQTGSGKTYTMMG-KPEAQ-EHKGLIPRSL 554
V+ I L+ + VC FAYGQTGSGKTYTM+G +P Q + G+ +
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 555 EQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIK 614
IF K + S EIY + DLL + + ENG K+ +K
Sbjct: 122 GDIFTFLNIYDKDNTK-GIFISFYEIYCGKLYDLLQKRKM----VAALENG--KKEVVVK 174
Query: 615 HDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVN 674
DL I+ V + E+ + R +G N+ SSRSH + + + +N
Sbjct: 175 ----------DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN 224
Query: 675 EATEQQVQGVLNLIDLAGSERLSRSGA-TGDRLKETQA----INKSLSSLSDVIFALAKK 729
+ T G + IDLAGSER GA T + K+TQ IN+SL +L + I A+
Sbjct: 225 KNTSL---GKIAFIDLAGSER----GADTVSQNKQTQTDGANINRSLLALKECIRAMDSD 277
Query: 730 EDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 780
++HIP+R+S+LT +L+ SK++M NISP ++L +LR+++RV
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 713 NKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESL 771
NKSLS+L +VI ALA+ + H+PYR+SK+T +LQ LG + +T + + SP + E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 772 CSLRFAAR 779
+L F R
Sbjct: 61 STLMFGQR 68
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 712 INKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGES 770
INKSLS+L +VI ALA+ + H+PYR+SK+T +LQ L + +T + + SP + E+
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 771 LCSLRFAAR 779
+L F R
Sbjct: 64 KSTLMFGQR 72
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)
Query: 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQ 567
I+ LV++ DG + G TG+GKT TM EA L+ ++ L Q
Sbjct: 17 IAGLVEALRDGERFVTLL-GATGTGKTVTMAKVIEALGRPALV-------LAPNKILAAQ 68
Query: 568 GWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHV---- 623
+ A E++ E + + D + E VPGK I+ DA+ N +
Sbjct: 69 -----LAAEFRELFPENAVEYFISY----YDYYQPEAYVPGKDLYIEKDASINPEIERLR 119
Query: 624 -----SDLTIVDVCSISEISSL 640
S LT DV ++ +S++
Sbjct: 120 HSTTRSLLTRRDVIVVASVSAI 141
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)
Query: 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQ 567
I+ LV++ DG + G TG+GKT TM EA L+ ++ L Q
Sbjct: 18 IAGLVEALRDGERFVTLL-GATGTGKTVTMAKVIEALGRPALV-------LAPNKILAAQ 69
Query: 568 GWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHV---- 623
+ A E++ E + + D + E VPGK I+ DA+ N +
Sbjct: 70 -----LAAEFRELFPENAVEYFISY----YDYYQPEAYVPGKDLYIEKDASINPEIERLR 120
Query: 624 -----SDLTIVDVCSISEISSL 640
S LT DV ++ +S++
Sbjct: 121 HSTTRSLLTRRDVIVVASVSAI 142
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 194 EKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSD 253
E+++R EK++ L + H+ IA + + ++ +L + + LQ A+L+ +
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIA---ELQAQIAELKAQLAKKEEELQAALARLEDE 1107
Query: 254 LETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCL 313
N K++ + L H + LQE L +A++++A KQK L E+ L
Sbjct: 1108 TSQKNNALKKIRE-----------LESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 314 RGELQQVRD 322
+ EL+ D
Sbjct: 1157 KTELEDTLD 1165
>pdb|1U2W|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
pdb|1U2W|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Length = 122
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 667 TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
T IFG +E ++QG L +D++G ++ ++ A +R K T A+
Sbjct: 6 TCEIFGYDEEKVNRIQGDLQTVDISGVSQILKAIADENRAKITYAL 51
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 82 EEVEALLNEKPKTKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQK 133
+E +++E K+KK D K KI+++ E K F IK ++VD + VL++ K
Sbjct: 196 KETRKIVSEYIKSKKLD-KDKIKEVVELRKEFLKKIKKMEEVDADRVLKEFK 246
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 229 LDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRG--HNNSLQ 286
+ D + E+ S L A + +DLETA + EKL +V+N L G ++
Sbjct: 147 ISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 206
Query: 287 EQLALSRASQDE 298
+ + A++DE
Sbjct: 207 KVIEFPHAAKDE 218
>pdb|3F72|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|E Chain E, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|F Chain F, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
Length = 122
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 667 TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAI 712
T IFG +E ++QG L +D++G ++ ++ A +R K T A+
Sbjct: 6 TCEIFGYDEEKVNRIQGDLQTVDISGVSQILKAIADENRAKITYAL 51
>pdb|3Q0X|A Chain A, N-Terminal Coiled-Coil Dimer Domain Of C. Reinhardtii
Sas-6 Homolog Bld12p
pdb|3Q0X|B Chain B, N-Terminal Coiled-Coil Dimer Domain Of C. Reinhardtii
Sas-6 Homolog Bld12p
Length = 228
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 278 LRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAE 337
R N+S+ +Q R S+ + T L +L + RDDRD VAQ+ +
Sbjct: 157 FRPGNDSVVKQFLAFRLSEVKGTCHD---------LSDDLSRTRDDRDSMVAQLAQCRQQ 207
Query: 338 IVKYQESTGKSLMELNS 354
+ + +E K L+E+ +
Sbjct: 208 LAQLREQYDKHLLEVQA 224
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 82 EEVEALLNEKPKTKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQK 133
+E +++E K+KK D K KI+++ E K F IK ++VD + VL++ K
Sbjct: 203 KETRKIVSEYIKSKKLD-KDKIKEVVELRKEFLKKIKKXEEVDADRVLKEFK 253
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 173 LREKVAKEESEKLDAIENHRIEKEARVAAEKLQA 206
++E A E+ E+L + EN +I+KEA+ A EKLQ+
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 173 LREKVAKEESEKLDAIENHRIEKEARVAAEKLQA 206
++E A E+ E+L + EN +I+KEA+ A EKLQ+
Sbjct: 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,294,369
Number of Sequences: 62578
Number of extensions: 706277
Number of successful extensions: 2654
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 2259
Number of HSP's gapped (non-prelim): 256
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)