Query 003672
Match_columns 804
No_of_seqs 666 out of 2906
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.8E-87 3.8E-92 750.3 44.9 436 352-803 222-660 (670)
2 KOG4280 Kinesin-like protein [ 100.0 2.4E-78 5.3E-83 650.0 23.7 329 441-790 5-343 (574)
3 KOG0243 Kinesin-like protein [ 100.0 2.5E-76 5.4E-81 660.1 25.3 343 439-795 47-402 (1041)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 4.1E-75 9E-80 604.4 22.5 332 440-791 6-339 (607)
5 cd01373 KISc_KLP2_like Kinesin 100.0 7.1E-73 1.5E-77 601.6 32.0 321 442-783 2-337 (337)
6 cd01370 KISc_KIP3_like Kinesin 100.0 6.1E-73 1.3E-77 602.3 30.7 323 442-783 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 9E-73 1.9E-77 637.1 31.9 326 440-792 97-443 (1320)
8 KOG0245 Kinesin-like protein [ 100.0 4.2E-74 9E-79 627.8 18.7 333 441-790 4-355 (1221)
9 cd01368 KISc_KIF23_like Kinesi 100.0 3.8E-71 8.2E-76 589.5 32.0 321 442-781 2-345 (345)
10 cd01367 KISc_KIF2_like Kinesin 100.0 3.4E-70 7.3E-75 578.1 30.5 315 442-781 2-322 (322)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 7E-70 1.5E-74 584.6 33.4 327 441-788 1-354 (356)
12 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.4E-69 3.1E-74 576.8 33.8 322 441-783 2-325 (325)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.1E-69 4.5E-74 581.4 34.0 332 441-791 2-351 (352)
14 cd01366 KISc_C_terminal Kinesi 100.0 2.9E-69 6.3E-74 576.1 34.1 328 440-786 1-329 (329)
15 KOG0242 Kinesin-like protein [ 100.0 2.2E-70 4.7E-75 616.1 24.7 333 441-794 6-342 (675)
16 cd01376 KISc_KID_like Kinesin 100.0 3.2E-69 6.9E-74 570.5 31.6 315 442-781 1-319 (319)
17 cd01371 KISc_KIF3 Kinesin moto 100.0 3.3E-69 7.1E-74 574.0 31.4 322 442-783 2-333 (333)
18 cd01375 KISc_KIF9_like Kinesin 100.0 3.1E-68 6.7E-73 566.0 32.0 323 443-781 2-334 (334)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-68 6.8E-73 564.8 31.7 315 442-783 1-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 6.8E-68 1.5E-72 568.4 32.5 323 442-784 2-341 (341)
21 KOG0241 Kinesin-like protein [ 100.0 2.7E-67 5.8E-72 563.5 20.9 332 441-788 4-356 (1714)
22 smart00129 KISc Kinesin motor, 100.0 9.2E-65 2E-69 543.9 31.7 327 442-790 1-335 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 2.4E-65 5.1E-70 549.5 23.7 324 448-783 1-335 (335)
24 KOG0246 Kinesin-like protein [ 100.0 9.8E-65 2.1E-69 524.4 25.8 330 441-789 208-547 (676)
25 cd00106 KISc Kinesin motor dom 100.0 9E-64 2E-68 535.6 33.1 318 442-781 1-328 (328)
26 KOG0247 Kinesin-like protein [ 100.0 2.1E-62 4.6E-67 522.3 20.3 336 438-789 28-442 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.7E-59 3.8E-64 516.3 5.5 319 449-791 1-325 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.9E-55 6.2E-60 491.2 24.7 287 486-791 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.1E-46 2.4E-51 366.9 17.7 176 504-762 8-186 (186)
30 TIGR02169 SMC_prok_A chromosom 99.7 1.1E-11 2.5E-16 156.9 54.3 63 373-435 953-1015(1164)
31 COG1196 Smc Chromosome segrega 99.6 2.5E-11 5.4E-16 150.4 53.3 185 250-434 812-1005(1163)
32 COG1196 Smc Chromosome segrega 99.6 1.9E-11 4E-16 151.5 49.1 409 69-482 132-562 (1163)
33 KOG0996 Structural maintenance 99.6 3.9E-11 8.3E-16 136.5 42.4 96 32-151 752-849 (1293)
34 TIGR02169 SMC_prok_A chromosom 99.6 6.3E-11 1.4E-15 150.2 47.9 107 309-415 386-492 (1164)
35 TIGR02168 SMC_prok_B chromosom 99.6 2.9E-10 6.2E-15 144.6 53.4 55 373-427 967-1021(1179)
36 TIGR02168 SMC_prok_B chromosom 99.5 3.9E-10 8.4E-15 143.4 51.5 57 380-440 967-1027(1179)
37 PRK02224 chromosome segregatio 99.5 3.4E-09 7.4E-14 129.6 49.3 10 634-643 829-838 (880)
38 PRK02224 chromosome segregatio 99.5 5.4E-09 1.2E-13 127.8 50.5 38 82-119 258-297 (880)
39 KOG0161 Myosin class II heavy 99.4 1E-08 2.2E-13 126.5 51.3 10 79-88 755-764 (1930)
40 KOG0161 Myosin class II heavy 99.4 1.3E-08 2.9E-13 125.5 51.5 28 420-447 1196-1223(1930)
41 PF07888 CALCOCO1: Calcium bin 99.4 4.5E-08 9.8E-13 106.4 46.9 21 100-120 142-162 (546)
42 KOG0971 Microtubule-associated 99.4 1.6E-07 3.4E-12 104.3 50.4 15 492-506 652-666 (1243)
43 PF07888 CALCOCO1: Calcium bin 99.4 1.7E-07 3.7E-12 102.0 48.6 15 106-120 141-155 (546)
44 KOG0996 Structural maintenance 99.4 4.5E-08 9.9E-13 112.1 44.8 107 308-414 479-585 (1293)
45 KOG0250 DNA repair protein RAD 99.3 2.5E-07 5.3E-12 106.5 49.5 16 629-644 1012-1027(1074)
46 KOG0933 Structural maintenance 99.3 9E-08 2E-12 107.9 43.8 122 242-363 819-940 (1174)
47 KOG0971 Microtubule-associated 99.2 1.8E-07 3.8E-12 103.9 39.2 168 278-446 373-544 (1243)
48 KOG0976 Rho/Rac1-interacting s 99.2 1.5E-06 3.3E-11 95.3 45.5 53 99-151 90-142 (1265)
49 TIGR00606 rad50 rad50. This fa 99.2 4.5E-07 9.7E-12 114.4 48.5 11 436-446 1139-1149(1311)
50 PRK03918 chromosome segregatio 99.2 1.9E-06 4.2E-11 105.7 51.7 20 99-118 198-217 (880)
51 KOG0018 Structural maintenance 99.2 1.7E-07 3.7E-12 106.8 38.1 250 63-329 637-898 (1141)
52 PF10174 Cast: RIM-binding pro 99.2 1.3E-06 2.7E-11 100.8 45.6 117 156-272 289-405 (775)
53 PF05701 WEMBL: Weak chloropla 99.2 4.5E-06 9.8E-11 94.3 49.2 23 200-222 169-191 (522)
54 KOG0250 DNA repair protein RAD 99.2 6.3E-06 1.4E-10 95.2 49.4 8 81-88 161-168 (1074)
55 KOG0976 Rho/Rac1-interacting s 99.2 4.1E-06 8.8E-11 92.0 45.3 79 312-390 327-405 (1265)
56 PF10174 Cast: RIM-binding pro 99.2 3.4E-06 7.5E-11 97.3 47.6 46 383-428 553-598 (775)
57 KOG0964 Structural maintenance 99.1 1.3E-06 2.8E-11 98.4 39.0 12 79-90 116-127 (1200)
58 KOG4643 Uncharacterized coiled 99.1 4.4E-06 9.5E-11 94.5 41.7 65 354-418 485-549 (1195)
59 KOG0964 Structural maintenance 99.1 8.5E-06 1.8E-10 92.0 43.2 10 6-15 18-27 (1200)
60 PF00261 Tropomyosin: Tropomyo 99.1 4.6E-07 1E-11 91.6 30.7 6 173-178 6-11 (237)
61 PF12128 DUF3584: Protein of u 99.0 1.9E-05 4.1E-10 98.7 50.6 14 752-765 1173-1186(1201)
62 KOG0933 Structural maintenance 99.0 8.8E-06 1.9E-10 92.4 41.5 19 59-77 654-672 (1174)
63 PF12128 DUF3584: Protein of u 99.0 3.7E-05 7.9E-10 96.2 51.7 12 79-90 223-234 (1201)
64 PRK01156 chromosome segregatio 99.0 2.3E-05 5E-10 96.1 49.0 23 753-784 861-883 (895)
65 PRK04778 septation ring format 99.0 4.3E-05 9.3E-10 87.8 47.7 50 374-423 451-500 (569)
66 KOG0977 Nuclear envelope prote 99.0 7.1E-06 1.5E-10 89.7 38.5 74 342-418 295-368 (546)
67 KOG4674 Uncharacterized conser 99.0 3.6E-05 7.9E-10 94.3 48.1 45 399-443 447-491 (1822)
68 KOG0612 Rho-associated, coiled 98.9 0.00013 2.9E-09 85.0 47.5 6 8-13 353-358 (1317)
69 KOG0977 Nuclear envelope prote 98.9 1.8E-05 3.8E-10 86.6 38.3 23 99-121 54-76 (546)
70 KOG0994 Extracellular matrix g 98.9 1.9E-05 4.1E-10 90.2 39.0 12 302-313 1620-1631(1758)
71 KOG1029 Endocytic adaptor prot 98.9 3.2E-05 6.9E-10 85.1 39.5 152 262-413 440-591 (1118)
72 PRK04863 mukB cell division pr 98.9 7.2E-05 1.6E-09 93.3 47.8 33 358-390 566-598 (1486)
73 PF00038 Filament: Intermediat 98.9 0.00011 2.5E-09 78.3 43.4 54 156-209 56-109 (312)
74 KOG4673 Transcription factor T 98.9 0.00027 5.8E-09 77.1 48.1 21 100-120 345-365 (961)
75 PRK04863 mukB cell division pr 98.9 0.00015 3.2E-09 90.6 48.0 9 435-443 653-661 (1486)
76 KOG0018 Structural maintenance 98.9 0.00016 3.4E-09 83.4 43.8 23 428-450 493-515 (1141)
77 PF06160 EzrA: Septation ring 98.8 0.00027 5.9E-09 80.9 45.8 79 99-177 99-177 (560)
78 PRK04778 septation ring format 98.8 0.00014 3E-09 83.7 43.2 55 100-154 104-158 (569)
79 PF01576 Myosin_tail_1: Myosin 98.8 7.3E-10 1.6E-14 131.7 0.0 58 94-151 173-230 (859)
80 PF09730 BicD: Microtubule-ass 98.8 0.00086 1.9E-08 76.7 48.8 24 99-122 32-55 (717)
81 KOG1029 Endocytic adaptor prot 98.8 0.00011 2.5E-09 80.9 37.8 22 684-705 957-978 (1118)
82 KOG0995 Centromere-associated 98.8 0.00062 1.3E-08 73.9 44.1 42 313-354 430-471 (581)
83 PF15070 GOLGA2L5: Putative go 98.8 0.00031 6.7E-09 80.0 42.6 9 683-691 542-550 (617)
84 PF06160 EzrA: Septation ring 98.7 0.00084 1.8E-08 76.9 45.7 78 97-174 104-181 (560)
85 PF01576 Myosin_tail_1: Myosin 98.7 2.4E-09 5.3E-14 127.3 0.0 9 435-443 526-534 (859)
86 PF15070 GOLGA2L5: Putative go 98.7 0.0015 3.3E-08 74.5 49.9 16 632-647 573-588 (617)
87 KOG0946 ER-Golgi vesicle-tethe 98.7 4.3E-05 9.3E-10 85.0 31.8 23 129-151 671-693 (970)
88 PF09726 Macoilin: Transmembra 98.7 8.1E-05 1.8E-09 85.9 35.5 89 103-195 420-515 (697)
89 PF09730 BicD: Microtubule-ass 98.6 0.0023 5E-08 73.3 48.8 49 103-151 29-77 (717)
90 PF09726 Macoilin: Transmembra 98.6 2.6E-05 5.7E-10 89.9 28.9 45 408-452 617-661 (697)
91 KOG0946 ER-Golgi vesicle-tethe 98.6 0.00016 3.5E-09 80.5 33.2 10 79-88 566-575 (970)
92 COG0419 SbcC ATPase involved i 98.6 0.0054 1.2E-07 75.2 50.8 21 429-449 728-748 (908)
93 COG1340 Uncharacterized archae 98.6 0.001 2.3E-08 67.0 38.0 65 325-389 175-239 (294)
94 PHA02562 46 endonuclease subun 98.6 7E-05 1.5E-09 87.1 32.5 7 552-558 513-519 (562)
95 KOG4673 Transcription factor T 98.6 0.0023 5E-08 70.1 46.4 47 370-416 710-756 (961)
96 PHA02562 46 endonuclease subun 98.6 0.00013 2.9E-09 84.8 33.7 10 486-495 497-506 (562)
97 PF14915 CCDC144C: CCDC144C pr 98.5 0.0014 3.1E-08 65.4 43.2 77 106-182 4-84 (305)
98 COG4372 Uncharacterized protei 98.5 0.00087 1.9E-08 68.5 33.5 21 518-541 391-411 (499)
99 PF05483 SCP-1: Synaptonemal c 98.5 0.0038 8.3E-08 68.9 49.1 13 13-25 28-40 (786)
100 PRK11637 AmiB activator; Provi 98.5 0.00034 7.3E-09 77.9 33.0 12 660-671 405-416 (428)
101 PRK11637 AmiB activator; Provi 98.5 0.0003 6.6E-09 78.2 32.5 79 99-181 45-123 (428)
102 KOG0978 E3 ubiquitin ligase in 98.4 0.0075 1.6E-07 68.3 45.9 78 371-448 545-622 (698)
103 KOG0999 Microtubule-associated 98.4 0.0025 5.4E-08 68.2 34.6 14 631-644 488-501 (772)
104 KOG0978 E3 ubiquitin ligase in 98.4 0.0087 1.9E-07 67.8 45.6 22 508-529 670-691 (698)
105 KOG0980 Actin-binding protein 98.4 0.0057 1.2E-07 69.5 38.5 12 772-783 881-892 (980)
106 COG5059 KIP1 Kinesin-like prot 98.3 3.1E-09 6.7E-14 120.5 -12.2 269 429-727 294-566 (568)
107 TIGR03185 DNA_S_dndD DNA sulfu 98.3 0.02 4.3E-07 67.5 43.3 10 582-591 617-626 (650)
108 PRK10929 putative mechanosensi 98.2 0.032 7E-07 67.8 43.6 45 753-798 992-1037(1109)
109 PRK11281 hypothetical protein; 98.2 0.034 7.3E-07 67.9 43.7 11 80-90 37-47 (1113)
110 PRK11281 hypothetical protein; 98.2 0.0076 1.7E-07 73.3 38.2 9 81-89 42-50 (1113)
111 COG4942 Membrane-bound metallo 98.2 0.007 1.5E-07 64.5 33.3 10 515-524 347-356 (420)
112 KOG0995 Centromere-associated 98.2 0.016 3.4E-07 63.3 46.8 60 159-218 264-323 (581)
113 COG5185 HEC1 Protein involved 98.2 0.012 2.7E-07 61.9 37.0 22 23-46 51-72 (622)
114 PF05667 DUF812: Protein of un 98.2 0.0057 1.2E-07 69.6 34.0 17 429-445 573-589 (594)
115 KOG0980 Actin-binding protein 98.2 0.026 5.5E-07 64.4 38.3 8 509-516 662-669 (980)
116 KOG0962 DNA repair protein RAD 98.2 0.041 8.8E-07 66.4 45.0 65 456-528 1140-1215(1294)
117 KOG0963 Transcription factor/C 98.1 0.025 5.3E-07 62.4 42.1 72 248-319 192-267 (629)
118 KOG0999 Microtubule-associated 98.1 0.026 5.6E-07 60.7 44.0 28 199-226 110-137 (772)
119 PF14915 CCDC144C: CCDC144C pr 98.1 0.016 3.5E-07 58.1 42.6 24 128-151 5-28 (305)
120 PRK10929 putative mechanosensi 98.1 0.068 1.5E-06 65.1 46.0 77 716-795 1005-1086(1109)
121 PRK09039 hypothetical protein; 97.9 0.0034 7.5E-08 67.0 23.9 8 523-530 265-272 (343)
122 COG4477 EzrA Negative regulato 97.9 0.059 1.3E-06 58.4 43.0 81 368-448 351-431 (570)
123 COG4477 EzrA Negative regulato 97.9 0.063 1.4E-06 58.2 43.5 14 44-57 58-71 (570)
124 KOG0963 Transcription factor/C 97.9 0.074 1.6E-06 58.8 41.2 11 79-89 12-22 (629)
125 PF05622 HOOK: HOOK protein; 97.8 3.6E-06 7.8E-11 99.5 0.0 40 81-120 245-286 (713)
126 PRK10246 exonuclease subunit S 97.8 0.22 4.8E-06 62.0 42.5 12 548-559 987-998 (1047)
127 COG5185 HEC1 Protein involved 97.8 0.076 1.7E-06 56.2 41.4 7 81-87 161-167 (622)
128 KOG0962 DNA repair protein RAD 97.8 0.21 4.5E-06 60.6 47.2 11 441-451 1143-1153(1294)
129 PF05557 MAD: Mitotic checkpoi 97.7 8.2E-06 1.8E-10 96.8 0.9 24 421-444 511-534 (722)
130 PF08317 Spc7: Spc7 kinetochor 97.7 0.066 1.4E-06 57.1 30.1 22 130-151 76-97 (325)
131 PF15619 Lebercilin: Ciliary p 97.7 0.055 1.2E-06 52.4 26.3 10 167-176 18-27 (194)
132 TIGR02680 conserved hypothetic 97.6 0.13 2.9E-06 65.4 36.1 13 660-672 1220-1232(1353)
133 PF07111 HCR: Alpha helical co 97.6 0.18 4E-06 56.6 51.3 99 310-408 473-572 (739)
134 PF08317 Spc7: Spc7 kinetochor 97.6 0.14 2.9E-06 54.7 31.1 21 101-121 75-95 (325)
135 PF05557 MAD: Mitotic checkpoi 97.6 1.2E-05 2.6E-10 95.4 0.0 9 742-750 669-677 (722)
136 PF09789 DUF2353: Uncharacteri 97.6 0.13 2.8E-06 53.4 31.3 43 297-339 136-178 (319)
137 PF13514 AAA_27: AAA domain 97.6 0.47 1E-05 59.8 44.7 18 498-515 1028-1046(1111)
138 PF06008 Laminin_I: Laminin Do 97.6 0.14 3E-06 53.1 32.0 13 401-413 222-234 (264)
139 TIGR02680 conserved hypothetic 97.5 0.23 5E-06 63.3 36.0 15 501-515 1187-1201(1353)
140 PF09755 DUF2046: Uncharacteri 97.5 0.14 3E-06 52.4 38.0 25 173-197 82-106 (310)
141 PF09787 Golgin_A5: Golgin sub 97.5 0.3 6.5E-06 55.6 37.7 22 99-120 114-135 (511)
142 PF09789 DUF2353: Uncharacteri 97.5 0.094 2E-06 54.3 25.9 20 399-418 196-215 (319)
143 smart00787 Spc7 Spc7 kinetocho 97.5 0.19 4.2E-06 52.7 29.9 22 130-151 71-92 (312)
144 PF13514 AAA_27: AAA domain 97.4 0.69 1.5E-05 58.3 46.1 12 484-495 1050-1061(1111)
145 KOG2129 Uncharacterized conser 97.4 0.21 4.6E-06 52.1 27.4 19 38-56 13-31 (552)
146 KOG0979 Structural maintenance 97.4 0.48 1E-05 55.5 35.1 12 486-497 527-538 (1072)
147 PF09755 DUF2046: Uncharacteri 97.4 0.23 5E-06 50.8 39.9 22 173-194 111-132 (310)
148 PF05911 DUF869: Plant protein 97.3 0.67 1.4E-05 54.4 36.1 14 308-321 190-203 (769)
149 KOG1937 Uncharacterized conser 97.2 0.38 8.3E-06 51.0 36.1 7 25-31 60-66 (521)
150 KOG4809 Rab6 GTPase-interactin 97.2 0.47 1E-05 51.6 37.5 11 3-13 9-19 (654)
151 PRK10246 exonuclease subunit S 97.2 1.1 2.5E-05 55.8 51.6 56 394-449 824-882 (1047)
152 smart00787 Spc7 Spc7 kinetocho 97.2 0.42 9.1E-06 50.2 30.6 21 101-121 70-90 (312)
153 TIGR01005 eps_transp_fam exopo 97.2 0.3 6.4E-06 59.0 29.9 33 505-537 530-564 (754)
154 TIGR00634 recN DNA repair prot 97.1 0.89 1.9E-05 52.7 31.6 31 486-518 463-493 (563)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.0 0.21 4.5E-06 45.5 19.9 25 263-287 102-126 (132)
156 PF10481 CENP-F_N: Cenp-F N-te 97.0 0.076 1.6E-06 52.3 17.5 24 417-440 166-189 (307)
157 KOG0249 LAR-interacting protei 96.9 0.12 2.7E-06 57.6 20.6 38 346-383 219-256 (916)
158 KOG0243 Kinesin-like protein [ 96.9 1.6 3.4E-05 52.2 41.7 19 102-120 405-423 (1041)
159 COG4717 Uncharacterized conser 96.9 1.4 3E-05 51.0 40.8 45 482-528 923-967 (984)
160 PF13870 DUF4201: Domain of un 96.9 0.47 1E-05 45.8 22.6 22 244-265 48-69 (177)
161 KOG4809 Rab6 GTPase-interactin 96.9 0.97 2.1E-05 49.2 36.9 52 200-251 335-386 (654)
162 TIGR03007 pepcterm_ChnLen poly 96.9 0.27 6E-06 56.2 24.8 27 203-229 161-187 (498)
163 KOG1853 LIS1-interacting prote 96.8 0.47 1E-05 46.2 21.5 24 394-417 135-158 (333)
164 TIGR01843 type_I_hlyD type I s 96.8 0.36 7.7E-06 54.0 25.1 21 400-420 247-267 (423)
165 KOG0979 Structural maintenance 96.8 1.6 3.5E-05 51.4 46.5 24 754-777 1038-1061(1072)
166 TIGR01843 type_I_hlyD type I s 96.8 0.33 7.1E-06 54.2 24.2 13 513-525 322-334 (423)
167 TIGR03007 pepcterm_ChnLen poly 96.8 0.29 6.2E-06 56.0 24.0 29 391-419 354-382 (498)
168 KOG0249 LAR-interacting protei 96.8 1.1 2.4E-05 50.4 26.5 7 552-558 524-530 (916)
169 PF10481 CENP-F_N: Cenp-F N-te 96.7 0.28 6.1E-06 48.5 19.2 15 130-144 19-33 (307)
170 KOG1850 Myosin-like coiled-coi 96.7 0.86 1.9E-05 46.1 43.1 63 320-382 220-282 (391)
171 TIGR00634 recN DNA repair prot 96.7 0.39 8.5E-06 55.6 24.3 17 547-563 473-489 (563)
172 PF06818 Fez1: Fez1; InterPro 96.7 0.67 1.4E-05 44.6 22.0 14 406-419 184-197 (202)
173 TIGR01005 eps_transp_fam exopo 96.6 0.25 5.4E-06 59.6 23.1 22 760-781 686-707 (754)
174 KOG1853 LIS1-interacting prote 96.6 0.81 1.8E-05 44.6 23.3 26 96-121 22-47 (333)
175 KOG1850 Myosin-like coiled-coi 96.5 1.1 2.4E-05 45.4 44.5 39 407-445 293-331 (391)
176 KOG1899 LAR transmembrane tyro 96.4 0.74 1.6E-05 50.8 21.6 14 549-562 487-500 (861)
177 PF07111 HCR: Alpha helical co 96.3 2.7 5.8E-05 47.7 52.8 105 140-245 310-415 (739)
178 PF09787 Golgin_A5: Golgin sub 96.3 2.9 6.2E-05 47.7 37.2 11 131-141 125-135 (511)
179 KOG1899 LAR transmembrane tyro 96.3 0.93 2E-05 50.1 21.9 40 201-240 109-148 (861)
180 KOG4677 Golgi integral membran 96.3 2 4.3E-05 45.7 33.7 20 49-68 108-130 (554)
181 PF13851 GAS: Growth-arrest sp 96.3 1.3 2.9E-05 43.4 29.2 46 128-177 26-71 (201)
182 PF10168 Nup88: Nuclear pore c 96.1 1 2.2E-05 53.1 23.2 16 403-418 689-704 (717)
183 COG4717 Uncharacterized conser 96.1 4.1 8.8E-05 47.4 35.7 60 359-418 776-837 (984)
184 PF08614 ATG16: Autophagy prot 96.0 0.098 2.1E-06 51.2 12.3 45 362-406 135-179 (194)
185 PF15254 CCDC14: Coiled-coil d 95.9 4.3 9.4E-05 46.6 27.6 44 683-726 807-850 (861)
186 PLN02939 transferase, transfer 95.9 5.7 0.00012 47.8 36.5 22 129-150 163-184 (977)
187 TIGR01000 bacteriocin_acc bact 95.9 2.9 6.4E-05 47.1 25.4 17 511-527 368-384 (457)
188 PF06818 Fez1: Fez1; InterPro 95.9 1.8 3.8E-05 41.8 23.0 17 306-322 136-152 (202)
189 PRK10869 recombination and rep 95.8 3.1 6.7E-05 47.9 25.0 19 546-564 462-480 (553)
190 TIGR03017 EpsF chain length de 95.8 2.6 5.7E-05 47.3 24.4 22 205-226 173-194 (444)
191 KOG1937 Uncharacterized conser 95.7 3.7 8E-05 43.9 36.9 22 393-414 496-517 (521)
192 PF13166 AAA_13: AAA domain 95.7 6.3 0.00014 47.3 28.6 11 79-89 66-76 (712)
193 TIGR01000 bacteriocin_acc bact 95.6 5.1 0.00011 45.1 26.5 29 156-184 92-120 (457)
194 PF04111 APG6: Autophagy prote 95.6 0.24 5.1E-06 52.3 14.0 7 533-539 217-223 (314)
195 PF13851 GAS: Growth-arrest sp 95.6 2.6 5.6E-05 41.4 28.2 45 130-178 35-79 (201)
196 PF12325 TMF_TATA_bd: TATA ele 95.5 0.85 1.8E-05 40.3 14.6 29 303-331 25-53 (120)
197 PF13166 AAA_13: AAA domain 95.4 8.4 0.00018 46.3 28.4 9 382-390 463-471 (712)
198 TIGR03017 EpsF chain length de 95.4 3.9 8.5E-05 45.9 24.0 22 310-331 344-365 (444)
199 PF12777 MT: Microtubule-bindi 95.4 3.9 8.4E-05 44.1 22.6 91 349-439 220-310 (344)
200 PF14073 Cep57_CLD: Centrosome 95.4 2.5 5.4E-05 39.8 22.0 28 284-311 61-88 (178)
201 KOG0982 Centrosomal protein Nu 95.3 4.9 0.00011 42.7 34.1 11 138-148 224-234 (502)
202 KOG1103 Predicted coiled-coil 95.2 4.4 9.5E-05 41.6 28.2 16 75-90 8-23 (561)
203 PRK10869 recombination and rep 95.1 8.3 0.00018 44.4 33.5 37 485-525 452-488 (553)
204 KOG4360 Uncharacterized coiled 95.1 6.2 0.00014 43.0 23.7 19 524-542 418-436 (596)
205 PF00769 ERM: Ezrin/radixin/mo 95.1 2.1 4.5E-05 43.6 18.3 16 375-390 186-201 (246)
206 TIGR00618 sbcc exonuclease Sbc 95.1 14 0.00029 46.6 51.6 6 720-725 968-973 (1042)
207 KOG2991 Splicing regulator [RN 95.1 3.8 8.3E-05 40.2 25.6 9 48-56 26-34 (330)
208 PF10498 IFT57: Intra-flagella 95.0 1.8 3.8E-05 46.5 18.2 6 26-31 39-44 (359)
209 PF13949 ALIX_LYPXL_bnd: ALIX 94.9 6.1 0.00013 41.6 28.3 50 400-449 242-291 (296)
210 KOG2129 Uncharacterized conser 94.8 6.3 0.00014 41.6 31.0 15 432-446 329-343 (552)
211 KOG2991 Splicing regulator [RN 94.7 4.8 0.0001 39.6 32.2 20 129-148 108-127 (330)
212 PF00308 Bac_DnaA: Bacterial d 94.7 0.017 3.6E-07 57.9 2.0 50 488-539 4-53 (219)
213 PF15450 DUF4631: Domain of un 94.7 8.5 0.00019 42.4 48.0 29 354-382 341-369 (531)
214 PRK06835 DNA replication prote 94.6 0.076 1.6E-06 56.5 6.9 35 504-539 168-202 (329)
215 PF04912 Dynamitin: Dynamitin 94.5 9.1 0.0002 42.0 23.6 7 430-436 378-384 (388)
216 COG0497 RecN ATPase involved i 94.5 11 0.00024 42.6 25.2 14 547-560 464-477 (557)
217 PF05384 DegS: Sensor protein 94.4 4.3 9.4E-05 37.9 22.8 31 308-338 91-121 (159)
218 KOG0804 Cytoplasmic Zn-finger 94.4 2.7 5.7E-05 45.0 17.1 10 408-417 437-446 (493)
219 PF06785 UPF0242: Uncharacteri 94.4 7 0.00015 40.1 21.1 57 303-359 101-157 (401)
220 PF10234 Cluap1: Clusterin-ass 94.4 5 0.00011 40.8 18.6 76 345-420 171-246 (267)
221 PF06785 UPF0242: Uncharacteri 94.1 8 0.00017 39.7 21.7 6 521-526 298-303 (401)
222 COG0556 UvrB Helicase subunit 94.0 0.1 2.2E-06 56.8 6.2 88 487-583 3-98 (663)
223 PF04582 Reo_sigmaC: Reovirus 93.8 0.12 2.6E-06 53.5 5.9 9 569-577 272-280 (326)
224 PF05276 SH3BP5: SH3 domain-bi 93.7 8.4 0.00018 38.7 30.7 42 299-340 182-223 (239)
225 COG2805 PilT Tfp pilus assembl 93.7 0.033 7.1E-07 56.5 1.7 28 510-537 115-142 (353)
226 PRK06620 hypothetical protein; 93.6 0.039 8.5E-07 55.0 2.2 51 485-538 9-62 (214)
227 PLN02939 transferase, transfer 93.6 22 0.00048 43.1 30.7 48 104-151 131-178 (977)
228 TIGR00618 sbcc exonuclease Sbc 93.6 27 0.00058 44.0 50.0 8 81-88 162-169 (1042)
229 KOG4302 Microtubule-associated 93.6 18 0.00038 41.8 33.1 25 127-151 59-83 (660)
230 PF04912 Dynamitin: Dynamitin 93.6 14 0.0003 40.6 24.2 22 127-148 92-113 (388)
231 PF04582 Reo_sigmaC: Reovirus 93.5 0.14 3.1E-06 52.8 6.0 13 407-419 141-153 (326)
232 KOG0239 Kinesin (KAR3 subfamil 93.5 9.8 0.00021 44.5 21.5 11 483-493 402-412 (670)
233 PRK03992 proteasome-activating 93.3 0.11 2.4E-06 56.9 5.4 18 520-537 165-182 (389)
234 KOG4302 Microtubule-associated 93.1 21 0.00045 41.3 33.7 8 487-494 446-453 (660)
235 KOG0992 Uncharacterized conser 93.0 16 0.00035 39.8 45.6 14 578-591 497-510 (613)
236 PF15450 DUF4631: Domain of un 93.0 17 0.00037 40.1 45.0 23 132-154 163-185 (531)
237 PRK06893 DNA replication initi 92.8 0.082 1.8E-06 53.4 3.1 50 485-539 9-58 (229)
238 COG3096 MukB Uncharacterized p 92.6 23 0.00049 40.6 40.4 47 310-356 1061-1107(1480)
239 PF14073 Cep57_CLD: Centrosome 92.6 9.5 0.00021 36.0 22.2 13 280-292 71-83 (178)
240 PF11932 DUF3450: Protein of u 92.5 8.6 0.00019 39.4 17.6 13 379-391 132-144 (251)
241 PF15290 Syntaphilin: Golgi-lo 92.5 8 0.00017 38.8 15.9 12 110-121 63-74 (305)
242 PRK10865 protein disaggregatio 92.5 0.89 1.9E-05 55.2 11.8 43 491-537 567-615 (857)
243 PRK08084 DNA replication initi 92.4 0.087 1.9E-06 53.5 2.7 49 485-538 15-63 (235)
244 PF15290 Syntaphilin: Golgi-lo 92.4 6.7 0.00014 39.4 15.2 9 499-507 228-236 (305)
245 COG2804 PulE Type II secretory 92.3 0.059 1.3E-06 59.0 1.4 32 508-539 246-277 (500)
246 KOG0288 WD40 repeat protein Ti 92.3 9.6 0.00021 40.5 17.0 23 514-536 213-235 (459)
247 COG2433 Uncharacterized conser 92.3 12 0.00026 42.1 18.6 16 77-92 273-288 (652)
248 COG2433 Uncharacterized conser 92.3 8.6 0.00019 43.1 17.5 25 359-383 483-507 (652)
249 PRK12377 putative replication 92.2 0.094 2E-06 53.3 2.6 49 490-539 72-120 (248)
250 PLN03188 kinesin-12 family pro 91.9 39 0.00086 41.7 39.2 11 513-523 1309-1319(1320)
251 PF10234 Cluap1: Clusterin-ass 91.6 17 0.00037 37.0 19.2 21 62-82 35-55 (267)
252 PTZ00454 26S protease regulato 91.6 0.67 1.4E-05 50.8 8.5 50 488-537 141-196 (398)
253 PRK14086 dnaA chromosomal repl 91.4 0.1 2.2E-06 59.5 1.9 51 486-538 282-332 (617)
254 PF10212 TTKRSYEDQ: Predicted 91.3 28 0.0006 38.8 22.9 58 309-366 421-478 (518)
255 COG5283 Phage-related tail pro 91.3 43 0.00094 41.0 35.2 11 740-750 715-725 (1213)
256 PF15294 Leu_zip: Leucine zipp 91.3 19 0.00041 36.8 27.1 9 111-119 11-19 (278)
257 cd09234 V_HD-PTP_like Protein- 91.2 24 0.00052 37.9 27.9 53 397-449 284-336 (337)
258 PRK08903 DnaA regulatory inact 91.2 0.15 3.4E-06 51.4 2.9 50 484-537 10-59 (227)
259 KOG4807 F-actin binding protei 91.1 22 0.00048 37.3 28.2 9 5-13 112-120 (593)
260 PRK07952 DNA replication prote 91.1 0.16 3.5E-06 51.5 2.8 49 489-538 69-117 (244)
261 TIGR03420 DnaA_homol_Hda DnaA 91.0 0.17 3.7E-06 51.0 3.0 48 485-537 8-55 (226)
262 cd08915 V_Alix_like Protein-in 91.0 26 0.00056 37.8 28.2 49 401-449 293-341 (342)
263 TIGR01242 26Sp45 26S proteasom 90.9 0.79 1.7E-05 50.0 8.3 18 520-537 156-173 (364)
264 PF03148 Tektin: Tektin family 90.9 28 0.00061 38.1 42.9 18 164-181 60-77 (384)
265 KOG4677 Golgi integral membran 90.8 26 0.00057 37.7 30.4 26 377-402 444-469 (554)
266 PRK08116 hypothetical protein; 90.7 0.15 3.2E-06 52.8 2.3 50 488-538 81-132 (268)
267 PF15358 TSKS: Testis-specific 90.5 26 0.00057 37.1 18.8 19 435-453 369-387 (558)
268 KOG2008 BTK-associated SH3-dom 90.4 22 0.00049 36.2 30.5 14 132-145 30-43 (426)
269 smart00053 DYNc Dynamin, GTPas 90.3 0.76 1.6E-05 46.5 6.8 53 631-696 86-138 (240)
270 PRK09087 hypothetical protein; 90.2 0.18 3.9E-06 50.8 2.3 50 484-538 13-62 (226)
271 PF09738 DUF2051: Double stran 90.1 26 0.00057 36.6 21.0 13 368-380 230-242 (302)
272 PRK05642 DNA replication initi 90.1 0.19 4.2E-06 50.9 2.5 51 486-538 13-63 (234)
273 PRK14088 dnaA chromosomal repl 89.7 0.19 4.1E-06 56.1 2.2 51 485-538 98-148 (440)
274 KOG2751 Beclin-like protein [S 89.7 17 0.00037 39.1 16.1 23 244-266 245-267 (447)
275 KOG4687 Uncharacterized coiled 89.7 23 0.00051 35.3 26.7 9 248-256 114-122 (389)
276 KOG4807 F-actin binding protei 89.6 30 0.00064 36.4 32.8 10 129-138 245-254 (593)
277 KOG2751 Beclin-like protein [S 89.4 26 0.00056 37.8 17.2 19 249-267 243-261 (447)
278 KOG0240 Kinesin (SMY1 subfamil 89.1 43 0.00093 37.5 23.0 12 36-47 93-104 (607)
279 KOG3091 Nuclear pore complex, 89.0 13 0.00027 40.8 14.9 14 289-302 378-391 (508)
280 KOG0992 Uncharacterized conser 88.9 40 0.00088 36.9 42.4 17 432-448 401-417 (613)
281 KOG0727 26S proteasome regulat 88.6 4 8.6E-05 40.5 9.9 87 477-563 140-246 (408)
282 PRK14087 dnaA chromosomal repl 88.3 0.27 5.9E-06 54.9 2.3 49 488-538 111-159 (450)
283 PRK08939 primosomal protein Dn 88.3 0.26 5.7E-06 51.9 2.0 51 489-539 124-175 (306)
284 PF13863 DUF4200: Domain of un 88.1 19 0.00041 32.3 16.6 57 164-220 42-98 (126)
285 PF05278 PEARLI-4: Arabidopsis 88.0 32 0.00069 35.0 16.1 10 236-245 240-249 (269)
286 PRK09841 cryptic autophosphory 87.8 18 0.00039 43.4 17.2 14 1-14 1-14 (726)
287 TIGR03345 VI_ClpV1 type VI sec 87.8 2.5 5.3E-05 51.4 10.0 38 500-537 570-613 (852)
288 COG5008 PilU Tfp pilus assembl 87.7 0.35 7.6E-06 48.2 2.3 34 504-537 109-144 (375)
289 TIGR00362 DnaA chromosomal rep 87.7 0.33 7.2E-06 53.8 2.4 52 485-538 103-154 (405)
290 PRK08181 transposase; Validate 87.6 0.28 6.1E-06 50.5 1.7 21 517-539 105-125 (269)
291 KOG2685 Cystoskeletal protein 87.5 45 0.00097 35.9 35.0 36 116-151 78-113 (421)
292 PRK00149 dnaA chromosomal repl 87.4 0.34 7.3E-06 54.5 2.3 53 484-538 114-166 (450)
293 KOG0972 Huntingtin interacting 87.4 34 0.00074 34.6 15.5 9 59-67 96-104 (384)
294 KOG0728 26S proteasome regulat 86.8 5 0.00011 39.8 9.5 19 519-537 180-198 (404)
295 PF13245 AAA_19: Part of AAA d 86.7 0.31 6.7E-06 39.5 1.1 25 512-537 3-27 (76)
296 KOG4787 Uncharacterized conser 86.5 60 0.0013 36.3 22.2 11 443-453 596-606 (852)
297 PRK09841 cryptic autophosphory 86.5 25 0.00055 42.2 17.5 33 760-792 671-703 (726)
298 PF10267 Tmemb_cc2: Predicted 86.4 54 0.0012 35.7 21.2 47 130-176 245-291 (395)
299 KOG0244 Kinesin-like protein [ 86.4 81 0.0018 37.7 26.5 16 129-144 330-345 (913)
300 TIGR02928 orc1/cdc6 family rep 86.4 0.51 1.1E-05 51.5 3.0 39 499-537 18-57 (365)
301 PRK11519 tyrosine kinase; Prov 86.0 42 0.00091 40.3 19.0 20 518-537 525-544 (719)
302 KOG4460 Nuclear pore complex, 85.9 63 0.0014 35.9 21.0 6 313-318 674-679 (741)
303 PF06548 Kinesin-related: Kine 85.7 58 0.0013 35.4 36.1 23 98-120 116-138 (488)
304 KOG4438 Centromere-associated 85.7 56 0.0012 35.2 43.2 9 167-175 179-187 (446)
305 PRK10436 hypothetical protein; 85.5 0.36 7.7E-06 53.9 1.2 30 509-538 207-236 (462)
306 PRK08727 hypothetical protein; 85.5 0.49 1.1E-05 48.0 2.1 18 521-538 42-59 (233)
307 COG0593 DnaA ATPase involved i 85.5 0.43 9.3E-06 51.7 1.7 52 485-538 80-131 (408)
308 COG1474 CDC6 Cdc6-related prot 85.4 0.6 1.3E-05 50.5 2.8 30 508-537 29-59 (366)
309 PRK00411 cdc6 cell division co 85.3 0.66 1.4E-05 51.3 3.2 37 501-537 35-72 (394)
310 TIGR01010 BexC_CtrB_KpsE polys 85.3 61 0.0013 35.2 18.6 29 394-422 273-301 (362)
311 KOG1103 Predicted coiled-coil 85.1 51 0.0011 34.2 23.7 31 309-339 260-290 (561)
312 cd09237 V_ScBro1_like Protein- 84.7 64 0.0014 35.0 27.6 52 397-448 303-354 (356)
313 PF06309 Torsin: Torsin; Inte 84.3 0.5 1.1E-05 42.1 1.3 44 493-537 26-70 (127)
314 PF03915 AIP3: Actin interacti 84.3 71 0.0015 35.2 19.4 10 103-112 94-103 (424)
315 PF07058 Myosin_HC-like: Myosi 84.2 53 0.0011 33.7 17.0 11 548-558 285-295 (351)
316 TIGR02538 type_IV_pilB type IV 84.1 0.43 9.3E-06 55.1 1.1 31 509-539 305-335 (564)
317 PRK11519 tyrosine kinase; Prov 84.0 54 0.0012 39.3 18.7 27 531-558 525-551 (719)
318 PLN03229 acetyl-coenzyme A car 84.0 94 0.002 36.4 25.0 15 127-141 434-448 (762)
319 smart00763 AAA_PrkA PrkA AAA d 83.8 2.3 4.9E-05 45.5 6.2 65 491-559 49-142 (361)
320 PF15035 Rootletin: Ciliary ro 83.7 43 0.00093 32.2 17.4 154 114-274 1-163 (182)
321 PRK06526 transposase; Provisio 83.6 0.5 1.1E-05 48.4 1.2 17 523-539 101-117 (254)
322 TIGR02533 type_II_gspE general 83.5 0.66 1.4E-05 52.3 2.2 31 508-538 230-260 (486)
323 cd00009 AAA The AAA+ (ATPases 83.5 0.75 1.6E-05 42.1 2.3 27 511-537 10-36 (151)
324 PF13191 AAA_16: AAA ATPase do 83.5 0.37 8E-06 46.7 0.1 33 505-537 9-41 (185)
325 COG1484 DnaC DNA replication p 83.3 0.97 2.1E-05 46.3 3.1 46 492-539 79-124 (254)
326 COG0497 RecN ATPase involved i 83.0 92 0.002 35.5 30.0 16 546-561 466-481 (557)
327 KOG2010 Double stranded RNA bi 82.9 25 0.00054 36.1 12.5 152 1-193 54-207 (405)
328 PF04851 ResIII: Type III rest 82.8 0.73 1.6E-05 44.3 2.0 28 511-538 15-43 (184)
329 PF01637 Arch_ATPase: Archaeal 82.7 0.54 1.2E-05 47.4 1.0 30 508-537 8-37 (234)
330 PF05673 DUF815: Protein of un 82.5 1.3 2.8E-05 44.3 3.6 132 488-667 23-156 (249)
331 cd01131 PilT Pilus retraction 82.4 0.47 1E-05 46.7 0.4 19 520-538 1-19 (198)
332 PTZ00112 origin recognition co 82.2 1.1 2.4E-05 52.7 3.4 36 502-537 761-798 (1164)
333 PRK12704 phosphodiesterase; Pr 82.2 99 0.0022 35.4 23.5 11 500-510 283-293 (520)
334 cd09235 V_Alix Middle V-domain 81.8 79 0.0017 34.0 26.3 49 400-448 289-337 (339)
335 PLN03229 acetyl-coenzyme A car 81.7 1.2E+02 0.0025 35.7 25.4 12 376-387 671-682 (762)
336 TIGR02524 dot_icm_DotB Dot/Icm 81.6 0.72 1.6E-05 49.8 1.5 24 515-538 129-152 (358)
337 PRK12402 replication factor C 81.6 0.74 1.6E-05 49.6 1.7 43 488-537 11-53 (337)
338 PF13401 AAA_22: AAA domain; P 81.6 0.45 9.7E-06 43.1 -0.0 18 520-537 4-21 (131)
339 TIGR01420 pilT_fam pilus retra 81.5 0.71 1.5E-05 49.8 1.5 29 510-538 112-140 (343)
340 KOG0972 Huntingtin interacting 81.4 66 0.0014 32.7 17.4 19 257-275 225-243 (384)
341 PRK10361 DNA recombination pro 81.3 97 0.0021 34.6 27.5 8 463-470 243-250 (475)
342 PRK15178 Vi polysaccharide exp 81.1 94 0.002 34.3 18.5 51 366-416 316-368 (434)
343 PF02994 Transposase_22: L1 tr 81.1 3.8 8.2E-05 44.5 6.8 52 344-395 145-196 (370)
344 PRK12422 chromosomal replicati 80.9 1 2.3E-05 50.1 2.5 52 485-538 104-159 (445)
345 PF15358 TSKS: Testis-specific 80.9 83 0.0018 33.6 21.0 16 500-515 430-445 (558)
346 TIGR02525 plasmid_TraJ plasmid 80.8 0.78 1.7E-05 49.6 1.5 26 511-537 141-166 (372)
347 PF06548 Kinesin-related: Kine 80.8 91 0.002 34.0 35.4 19 370-388 409-427 (488)
348 PRK06921 hypothetical protein; 80.8 1.3 2.7E-05 45.9 2.9 35 504-538 98-135 (266)
349 KOG2196 Nuclear porin [Nuclear 80.6 63 0.0014 32.1 21.2 57 205-261 80-136 (254)
350 TIGR02903 spore_lon_C ATP-depe 80.5 5.3 0.00012 46.7 8.2 42 489-537 151-192 (615)
351 KOG4687 Uncharacterized coiled 80.5 67 0.0014 32.2 27.6 19 263-281 101-119 (389)
352 cd01129 PulE-GspE PulE/GspE Th 80.5 1.1 2.3E-05 46.4 2.2 31 508-538 68-98 (264)
353 PF01695 IstB_IS21: IstB-like 80.5 1.1 2.5E-05 43.1 2.3 21 519-539 46-66 (178)
354 COG3206 GumC Uncharacterized p 80.4 1.1E+02 0.0023 34.6 27.3 13 401-413 375-387 (458)
355 TIGR02231 conserved hypothetic 80.4 22 0.00047 40.9 13.2 9 462-470 195-203 (525)
356 PF00270 DEAD: DEAD/DEAH box h 80.0 0.84 1.8E-05 43.3 1.3 26 511-538 7-32 (169)
357 TIGR03015 pepcterm_ATPase puta 79.5 1.4 2.9E-05 45.8 2.7 27 511-537 34-60 (269)
358 PRK13894 conjugal transfer ATP 79.5 1.1 2.3E-05 47.6 1.9 29 508-537 137-165 (319)
359 TIGR03794 NHPM_micro_HlyD NHPM 79.3 1.1E+02 0.0024 34.0 20.6 8 568-575 363-370 (421)
360 PF02994 Transposase_22: L1 tr 79.3 6 0.00013 43.0 7.6 7 443-449 232-238 (370)
361 TIGR03319 YmdA_YtgF conserved 79.3 1.2E+02 0.0027 34.6 23.8 21 760-780 468-489 (514)
362 KOG0926 DEAH-box RNA helicase 79.1 1.3 2.8E-05 50.9 2.5 31 519-550 270-308 (1172)
363 PF00448 SRP54: SRP54-type pro 79.1 0.67 1.4E-05 45.4 0.3 16 522-537 3-18 (196)
364 PF12252 SidE: Dot/Icm substra 79.1 1.6E+02 0.0035 35.8 30.9 23 429-451 1405-1427(1439)
365 TIGR03794 NHPM_micro_HlyD NHPM 78.8 1.1E+02 0.0025 33.9 20.5 15 394-408 236-250 (421)
366 PF03999 MAP65_ASE1: Microtubu 78.7 2.1 4.7E-05 50.0 4.3 312 127-448 82-405 (619)
367 PRK15455 PrkA family serine pr 78.6 3.4 7.5E-05 46.7 5.5 68 491-559 75-162 (644)
368 PF07058 Myosin_HC-like: Myosi 78.3 86 0.0019 32.2 17.2 156 233-388 2-160 (351)
369 PRK12704 phosphodiesterase; Pr 77.9 1.3E+02 0.0029 34.3 23.9 158 215-372 29-191 (520)
370 smart00382 AAA ATPases associa 77.9 0.82 1.8E-05 41.4 0.5 19 519-537 1-19 (148)
371 cd00046 DEXDc DEAD-like helica 77.7 0.8 1.7E-05 41.5 0.3 15 523-537 3-17 (144)
372 TIGR03752 conj_TIGR03752 integ 77.2 31 0.00066 38.0 12.0 81 212-292 61-142 (472)
373 PF13604 AAA_30: AAA domain; P 77.2 1.2 2.7E-05 43.6 1.5 29 509-537 7-35 (196)
374 cd09238 V_Alix_like_1 Protein- 77.1 1.1E+02 0.0024 32.9 27.4 244 205-450 74-339 (339)
375 PF06705 SF-assemblin: SF-asse 76.9 90 0.002 31.8 36.3 231 174-407 4-240 (247)
376 PF01920 Prefoldin_2: Prefoldi 76.8 47 0.001 28.5 11.7 87 304-390 1-102 (106)
377 TIGR02231 conserved hypothetic 76.6 28 0.0006 40.1 12.5 90 231-320 71-171 (525)
378 KOG2391 Vacuolar sorting prote 76.6 38 0.00083 35.3 11.7 125 324-448 220-345 (365)
379 PTZ00361 26 proteosome regulat 76.5 14 0.0003 41.1 9.5 145 389-537 55-234 (438)
380 PF00437 T2SE: Type II/IV secr 76.4 1.1 2.4E-05 46.5 1.0 30 508-537 112-144 (270)
381 PF13207 AAA_17: AAA domain; P 76.4 0.98 2.1E-05 40.2 0.5 15 522-536 1-15 (121)
382 TIGR02449 conserved hypothetic 76.1 35 0.00075 26.5 9.0 64 218-281 1-64 (65)
383 KOG2264 Exostosin EXT1L [Signa 75.7 22 0.00048 39.3 10.3 70 261-330 81-150 (907)
384 KOG0989 Replication factor C, 75.6 2.1 4.5E-05 44.0 2.6 42 495-536 30-73 (346)
385 cd00632 Prefoldin_beta Prefold 75.6 52 0.0011 28.4 12.1 83 219-301 1-105 (105)
386 PF03215 Rad17: Rad17 cell cyc 75.6 1.7 3.6E-05 49.3 2.2 32 506-537 29-62 (519)
387 PF12004 DUF3498: Domain of un 75.6 0.89 1.9E-05 50.4 0.0 120 127-246 374-494 (495)
388 COG1730 GIM5 Predicted prefold 75.4 67 0.0015 29.6 15.2 100 251-350 5-143 (145)
389 TIGR02782 TrbB_P P-type conjug 75.3 1.7 3.7E-05 45.7 2.0 31 506-537 119-149 (299)
390 TIGR02971 heterocyst_DevB ABC 75.2 1.2E+02 0.0026 32.3 20.0 142 258-402 54-203 (327)
391 cd00632 Prefoldin_beta Prefold 75.1 54 0.0012 28.3 12.8 87 304-390 2-103 (105)
392 smart00283 MA Methyl-accepting 75.1 99 0.0021 31.3 36.4 241 200-440 1-262 (262)
393 cd01130 VirB11-like_ATPase Typ 75.0 1.8 4E-05 42.0 2.1 31 506-537 12-42 (186)
394 PF08298 AAA_PrkA: PrkA AAA do 75.0 6 0.00013 42.0 5.8 64 491-558 59-141 (358)
395 KOG2264 Exostosin EXT1L [Signa 75.0 27 0.00059 38.7 10.7 72 301-372 79-150 (907)
396 PRK04406 hypothetical protein; 75.0 27 0.00058 28.1 8.2 56 363-418 3-58 (75)
397 COG4962 CpaF Flp pilus assembl 74.9 2.8 6.1E-05 44.0 3.4 81 450-537 110-190 (355)
398 PF11570 E2R135: Coiled-coil r 74.8 61 0.0013 28.7 13.8 114 310-423 3-136 (136)
399 KOG4005 Transcription factor X 74.8 90 0.002 30.7 13.7 122 58-192 23-149 (292)
400 TIGR03499 FlhF flagellar biosy 74.6 2.6 5.7E-05 44.0 3.2 39 499-537 164-211 (282)
401 PRK09343 prefoldin subunit bet 74.6 63 0.0014 28.8 13.7 97 318-414 3-114 (121)
402 COG1730 GIM5 Predicted prefold 74.6 71 0.0015 29.4 15.2 101 293-393 5-144 (145)
403 PF06120 Phage_HK97_TLTM: Tail 74.6 1.2E+02 0.0025 31.8 20.8 153 252-404 41-202 (301)
404 PRK12723 flagellar biosynthesi 74.6 2.7 5.8E-05 45.8 3.3 43 495-537 141-191 (388)
405 PF00004 AAA: ATPase family as 74.4 1 2.2E-05 40.6 0.1 15 523-537 1-15 (132)
406 KOG2077 JNK/SAPK-associated pr 74.3 97 0.0021 34.6 14.6 125 106-234 299-423 (832)
407 PF08826 DMPK_coil: DMPK coile 74.3 37 0.0008 26.0 9.8 61 256-316 1-61 (61)
408 PRK13900 type IV secretion sys 74.2 1.8 3.8E-05 46.3 1.8 31 506-537 147-177 (332)
409 PF02403 Seryl_tRNA_N: Seryl-t 74.1 51 0.0011 28.6 10.8 69 245-313 29-100 (108)
410 PF01935 DUF87: Domain of unkn 74.1 1.1 2.4E-05 45.2 0.2 15 523-537 26-40 (229)
411 PF09744 Jnk-SapK_ap_N: JNK_SA 74.0 79 0.0017 29.6 16.5 120 161-283 36-155 (158)
412 TIGR03319 YmdA_YtgF conserved 73.9 1.7E+02 0.0037 33.4 24.2 160 213-372 21-185 (514)
413 PF11180 DUF2968: Protein of u 73.8 87 0.0019 30.1 15.8 99 241-339 87-185 (192)
414 PRK10361 DNA recombination pro 73.7 1.6E+02 0.0034 33.0 27.2 169 221-390 26-194 (475)
415 PRK13851 type IV secretion sys 73.6 1.9 4.1E-05 46.2 1.9 31 506-537 149-179 (344)
416 PRK13833 conjugal transfer pro 73.6 1.9 4.2E-05 45.6 1.9 30 507-537 132-161 (323)
417 PF05266 DUF724: Protein of un 73.5 92 0.002 30.2 17.3 112 265-376 68-185 (190)
418 TIGR00635 ruvB Holliday juncti 73.1 2 4.2E-05 45.6 1.9 43 495-537 3-47 (305)
419 PF13479 AAA_24: AAA domain 73.1 1.5 3.1E-05 43.8 0.8 19 519-537 2-20 (213)
420 TIGR02971 heterocyst_DevB ABC 72.9 1.4E+02 0.0029 31.9 20.1 142 160-304 54-203 (327)
421 TIGR02338 gimC_beta prefoldin, 72.6 65 0.0014 28.1 13.2 82 218-299 4-107 (110)
422 PF04871 Uso1_p115_C: Uso1 / p 72.5 77 0.0017 28.9 15.6 107 270-376 2-110 (136)
423 PF02562 PhoH: PhoH-like prote 72.4 2.4 5.3E-05 41.6 2.2 25 509-535 10-34 (205)
424 PF02456 Adeno_IVa2: Adenoviru 72.4 1.4 3E-05 45.2 0.5 17 521-537 88-104 (369)
425 PF03999 MAP65_ASE1: Microtubu 72.3 19 0.00041 42.3 9.8 316 106-431 82-413 (619)
426 PF02050 FliJ: Flagellar FliJ 72.3 66 0.0014 28.0 16.4 109 304-412 1-114 (123)
427 PF05496 RuvB_N: Holliday junc 72.1 4.7 0.0001 40.0 4.0 41 495-535 23-65 (233)
428 PF04949 Transcrip_act: Transc 72.1 78 0.0017 28.8 18.1 128 251-381 30-158 (159)
429 PF08581 Tup_N: Tup N-terminal 71.9 53 0.0011 26.7 12.1 79 312-393 1-79 (79)
430 PF02403 Seryl_tRNA_N: Seryl-t 71.9 47 0.001 28.8 10.0 69 308-376 29-100 (108)
431 PF13555 AAA_29: P-loop contai 71.7 1.4 3.1E-05 33.9 0.3 16 522-537 25-40 (62)
432 KOG3859 Septins (P-loop GTPase 71.4 1.9 4.1E-05 43.3 1.1 33 505-537 25-59 (406)
433 PRK04406 hypothetical protein; 71.4 41 0.00089 27.1 8.5 56 265-320 3-58 (75)
434 COG3352 FlaC Putative archaeal 71.3 57 0.0012 29.8 10.1 145 310-454 4-149 (157)
435 PRK00409 recombination and DNA 71.1 1.7E+02 0.0037 35.5 17.5 116 120-245 504-625 (782)
436 PRK06547 hypothetical protein; 70.8 2.9 6.4E-05 40.0 2.3 29 508-536 3-31 (172)
437 PRK04195 replication factor C 70.7 3.1 6.7E-05 47.2 2.9 38 500-537 18-56 (482)
438 COG1219 ClpX ATP-dependent pro 70.6 1.8 4E-05 44.6 0.8 16 520-535 97-112 (408)
439 PF12846 AAA_10: AAA-like doma 70.5 1.5 3.3E-05 46.1 0.3 18 520-537 1-18 (304)
440 TIGR03752 conj_TIGR03752 integ 70.5 63 0.0014 35.7 12.3 81 191-271 61-142 (472)
441 KOG2010 Double stranded RNA bi 70.5 65 0.0014 33.2 11.5 97 237-333 110-207 (405)
442 TIGR01069 mutS2 MutS2 family p 70.4 1.3E+02 0.0028 36.3 16.4 108 138-245 499-607 (771)
443 TIGR01069 mutS2 MutS2 family p 70.1 1.3E+02 0.0029 36.3 16.3 109 120-238 499-607 (771)
444 PF07724 AAA_2: AAA domain (Cd 70.0 1.9 4E-05 41.3 0.7 16 521-536 4-19 (171)
445 PF08826 DMPK_coil: DMPK coile 69.8 48 0.001 25.4 10.1 61 158-218 1-61 (61)
446 PF06705 SF-assemblin: SF-asse 69.8 1.3E+02 0.0029 30.5 35.4 224 135-361 4-236 (247)
447 PF11180 DUF2968: Protein of u 69.7 1.1E+02 0.0023 29.4 15.7 100 185-284 87-186 (192)
448 PF10205 KLRAQ: Predicted coil 69.6 71 0.0015 27.3 11.5 74 305-378 2-75 (102)
449 KOG4403 Cell surface glycoprot 69.6 1.7E+02 0.0037 31.6 21.0 175 132-322 238-425 (575)
450 PF15294 Leu_zip: Leucine zipp 69.5 1.4E+02 0.0031 30.7 27.7 243 171-423 4-277 (278)
451 TIGR03346 chaperone_ClpB ATP-d 69.4 43 0.00093 41.1 12.3 221 307-536 383-611 (852)
452 PF10458 Val_tRNA-synt_C: Valy 69.3 36 0.00078 26.6 7.7 56 126-181 1-66 (66)
453 KOG3647 Predicted coiled-coil 69.3 1.3E+02 0.0028 30.2 18.6 173 279-451 48-220 (338)
454 PF13671 AAA_33: AAA domain; P 69.3 2.1 4.5E-05 39.4 0.9 14 522-535 1-14 (143)
455 PF00910 RNA_helicase: RNA hel 68.7 1.5 3.2E-05 38.3 -0.3 15 523-537 1-15 (107)
456 PF12761 End3: Actin cytoskele 68.6 60 0.0013 31.3 10.4 91 302-392 97-195 (195)
457 PF11570 E2R135: Coiled-coil r 68.5 86 0.0019 27.8 14.7 114 275-388 3-136 (136)
458 smart00283 MA Methyl-accepting 68.4 1.4E+02 0.003 30.2 37.4 241 133-377 1-262 (262)
459 KOG3809 Microtubule-binding pr 68.3 1E+02 0.0022 33.3 12.8 95 100-194 478-579 (583)
460 TIGR03495 phage_LysB phage lys 68.3 94 0.002 28.2 11.4 77 281-357 20-96 (135)
461 PF13086 AAA_11: AAA domain; P 68.3 2.2 4.7E-05 42.9 0.9 26 511-537 9-34 (236)
462 PRK02119 hypothetical protein; 68.3 41 0.0009 26.9 7.9 54 365-418 3-56 (73)
463 PF04949 Transcrip_act: Transc 68.1 96 0.0021 28.2 17.7 113 209-321 30-146 (159)
464 COG1419 FlhF Flagellar GTP-bin 67.9 4 8.7E-05 44.0 2.7 42 496-537 174-220 (407)
465 PF13863 DUF4200: Domain of un 67.9 90 0.002 27.8 18.3 111 135-245 6-116 (126)
466 TIGR03545 conserved hypothetic 67.9 1.6E+02 0.0034 34.0 15.6 202 301-505 164-373 (555)
467 PRK10536 hypothetical protein; 67.8 2.9 6.3E-05 42.4 1.6 39 488-535 51-89 (262)
468 PRK00409 recombination and DNA 67.6 2.2E+02 0.0048 34.5 17.6 115 138-252 504-625 (782)
469 PF10805 DUF2730: Protein of u 67.6 68 0.0015 27.8 9.9 66 321-386 34-101 (106)
470 KOG0447 Dynamin-like GTP bindi 67.6 5.7 0.00012 43.7 3.8 197 503-759 286-487 (980)
471 PRK02119 hypothetical protein; 67.6 50 0.0011 26.4 8.2 55 211-265 3-57 (73)
472 PLN00020 ribulose bisphosphate 67.5 4.7 0.0001 43.1 3.1 49 487-535 110-163 (413)
473 PF15035 Rootletin: Ciliary ro 67.4 1.2E+02 0.0026 29.2 21.5 160 225-390 3-178 (182)
474 PF15456 Uds1: Up-regulated Du 67.3 94 0.002 27.8 11.9 79 308-387 22-111 (124)
475 PF10805 DUF2730: Protein of u 67.3 62 0.0013 28.1 9.5 66 314-379 34-101 (106)
476 KOG4572 Predicted DNA-binding 67.0 2.6E+02 0.0057 32.9 36.5 320 94-436 880-1227(1424)
477 PF07693 KAP_NTPase: KAP famil 66.7 3.6 7.7E-05 44.0 2.2 35 503-537 2-37 (325)
478 PF08172 CASP_C: CASP C termin 66.7 51 0.0011 33.5 10.2 104 233-336 1-135 (248)
479 PRK10476 multidrug resistance 66.6 1.9E+02 0.0041 31.1 17.8 123 241-363 82-207 (346)
480 PF12775 AAA_7: P-loop contain 66.6 3.4 7.5E-05 42.8 1.9 42 491-537 9-50 (272)
481 cd00176 SPEC Spectrin repeats, 66.5 1.3E+02 0.0028 29.1 21.7 202 131-340 2-211 (213)
482 PRK09183 transposase/IS protei 66.4 3.2 6.9E-05 42.7 1.6 43 491-537 77-119 (259)
483 TIGR00763 lon ATP-dependent pr 66.3 35 0.00076 41.3 10.7 172 322-536 188-363 (775)
484 PF07728 AAA_5: AAA domain (dy 66.2 2 4.3E-05 39.3 0.1 15 523-537 2-16 (139)
485 PHA02544 44 clamp loader, smal 66.0 3.3 7.1E-05 44.1 1.7 41 495-537 20-60 (316)
486 PF07851 TMPIT: TMPIT-like pro 66.0 97 0.0021 32.8 12.3 90 333-422 1-91 (330)
487 PRK00440 rfc replication facto 65.9 3.1 6.8E-05 44.2 1.6 44 487-537 12-55 (319)
488 PHA00729 NTP-binding motif con 65.4 4.1 8.9E-05 40.6 2.1 25 511-535 8-32 (226)
489 PF00025 Arf: ADP-ribosylation 65.3 3.5 7.5E-05 39.6 1.6 30 508-537 1-31 (175)
490 TIGR00293 prefoldin, archaeal 65.0 65 0.0014 28.8 9.8 96 226-326 1-125 (126)
491 PF05377 FlaC_arch: Flagella a 64.9 48 0.001 24.8 6.9 45 144-192 1-45 (55)
492 PF04102 SlyX: SlyX; InterPro 64.8 46 0.00099 26.3 7.5 52 214-265 1-52 (69)
493 TIGR00998 8a0101 efflux pump m 64.7 2E+02 0.0043 30.7 17.0 129 283-411 76-205 (334)
494 PF15233 SYCE1: Synaptonemal c 64.7 1E+02 0.0022 27.4 13.3 99 264-362 4-108 (134)
495 KOG2391 Vacuolar sorting prote 64.7 1.9E+02 0.0041 30.4 19.3 218 1-245 141-359 (365)
496 cd09236 V_AnPalA_UmRIM20_like 64.6 2.1E+02 0.0046 30.9 28.8 259 191-450 73-353 (353)
497 PF06637 PV-1: PV-1 protein (P 64.6 2E+02 0.0043 30.6 40.0 326 142-474 57-417 (442)
498 PF04102 SlyX: SlyX; InterPro 64.5 44 0.00095 26.4 7.4 52 347-398 1-52 (69)
499 PF10205 KLRAQ: Predicted coil 64.4 91 0.002 26.6 11.8 73 207-279 2-74 (102)
500 KOG0998 Synaptic vesicle prote 64.3 15 0.00032 44.6 6.9 165 240-404 430-594 (847)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.8e-87 Score=750.34 Aligned_cols=436 Identities=51% Similarity=0.716 Sum_probs=377.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HH
Q 003672 352 LNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGE---KL 428 (804)
Q Consensus 352 l~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~---~~ 428 (804)
+..+...+..+........+++..++.++..++..+..+......+..+++.....+..+...+.+....+.+.. ..
T Consensus 222 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~ 301 (670)
T KOG0239|consen 222 YADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEE 301 (670)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555566666677777766666666666666666666666555555555555544444333 78
Q ss_pred HhhhhhhhhhhcccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHHH
Q 003672 429 RKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLEI 508 (804)
Q Consensus 429 ~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~ 508 (804)
+++|+++|.+|+++|+||||+||+.+.+.......++.+|...+.........+....+.|.||+||+|.++|++||.++
T Consensus 302 r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~ 381 (670)
T KOG0239|consen 302 RRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV 381 (670)
T ss_pred HHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH
Confidence 89999999999999999999999999888766666677776533322333333344555799999999999999999999
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhh
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDL 588 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DL 588 (804)
.|+|+++++|||+||||||||||||||||.|+ .++.+|||||++.+||..+..... +|.|.+.+||+|||||.|+||
T Consensus 382 ~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~Dl 458 (670)
T KOG0239|consen 382 SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDL 458 (670)
T ss_pred HHHHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHh
Confidence 99999999999999999999999999999996 346789999999999999987776 999999999999999999999
Q ss_pred cCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEE
Q 003672 589 LSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTL 668 (804)
Q Consensus 589 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l 668 (804)
|++.. .+..+.|+++++|.++|.+++.++|.+.+++..+++.|..+|++++|.+|.+|||||+||+|
T Consensus 459 L~~~~-------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v 525 (670)
T KOG0239|consen 459 LSDES-------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRV 525 (670)
T ss_pred ccccc-------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEE
Confidence 98753 24788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccccccccC
Q 003672 669 RIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCL 748 (804)
Q Consensus 669 ~i~~~~~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l 748 (804)
+|.+.+..++..+.|+|+|||||||||+++++++|+|++|++.||+||++|++||.||+.+..||||||||||+||+|||
T Consensus 526 ~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sL 605 (670)
T KOG0239|consen 526 RIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSL 605 (670)
T ss_pred EEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCccccccccccccccc
Q 003672 749 GRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLKAADSRLSY 803 (804)
Q Consensus 749 ~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~~~~~~~~~~~~~ 803 (804)
||+++|+|||+|||...++.||+++|+||.||+.|++|++++++......+..++
T Consensus 606 GG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~ 660 (670)
T KOG0239|consen 606 GGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRF 660 (670)
T ss_pred CCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999988777665554
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-78 Score=649.95 Aligned_cols=329 Identities=44% Similarity=0.642 Sum_probs=289.6
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeec-----CCceeeEeeccccCCCCChhHHHHH-HHHHHHH
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQ-----NGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQS 514 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~-----~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~ 514 (804)
..+.++.|+||+...+........+.++.. ...+.+.. .+..++|.||.||+++++|++||.. +.|+|++
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~s 80 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPA----HGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVES 80 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccc----cceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHH
Confidence 356789999998885544333333333322 11222222 3456789999999999999999998 5689999
Q ss_pred hhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCC
Q 003672 515 ALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRA 594 (804)
Q Consensus 515 ~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~ 594 (804)
|++|||+||||||||||||||||+|+. +...|||||++.+||..++...... .|.|+|||+|||||.|+|||++...
T Consensus 81 vl~GyNgtvFaYGQTGsGKTyTM~G~~--~~~~GiiPraf~~LF~~I~~~~~~~-~f~vrvS~lEiYnE~i~DLL~~~~~ 157 (574)
T KOG4280|consen 81 VLEGYNGTVFAYGQTGSGKTYTMIGPD--PELRGLIPRAFEHLFRHIDERKEKT-RFLVRVSYLEIYNESIRDLLSPVNP 157 (574)
T ss_pred HhcccCceEEEeccCCCCCceEeeCCC--hhhCCchhHHHHHHHHHHHhccccc-eEEEEeehHHHHhHHHHHHhCccCc
Confidence 999999999999999999999999993 6789999999999999998654433 8999999999999999999998642
Q ss_pred CCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe-e
Q 003672 595 GGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG-V 673 (804)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~-~ 673 (804)
+.+.+++++..+++|.|++.+.|.|++++..+|..|..+|++++|.||..|||||+||||+|+. .
T Consensus 158 --------------~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~ 223 (574)
T KOG4280|consen 158 --------------KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSE 223 (574)
T ss_pred --------------CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeec
Confidence 6789999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred e--ccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCC-CCCcCCCcccccccccCCC
Q 003672 674 N--EATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED-HIPYRNSKLTYLLQPCLGR 750 (804)
Q Consensus 674 ~--~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~-~vp~r~s~LT~lL~~~l~g 750 (804)
. ........|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|+.+.. |||||||+||+||||+|||
T Consensus 224 ~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGG 303 (574)
T KOG4280|consen 224 KSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGG 303 (574)
T ss_pred ccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCC
Confidence 2 134456789999999999999999999999999999999999999999999998877 9999999999999999999
Q ss_pred CceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCcc
Q 003672 751 DSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSR 790 (804)
Q Consensus 751 ~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~ 790 (804)
||+|+||+||+|.+.++.||++||+||+|++.|++.+.++
T Consensus 304 N~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~in 343 (574)
T KOG4280|consen 304 NSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVIN 343 (574)
T ss_pred CceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999986544
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-76 Score=660.09 Aligned_cols=343 Identities=38% Similarity=0.578 Sum_probs=295.6
Q ss_pred hcccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC--C--ceeeEeeccccCCCCChhHHHHH-HHHHHH
Q 003672 439 LKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN--G--QKFPFTFDKVFNHEASQQDVFLE-ISQLVQ 513 (804)
Q Consensus 439 Lk~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~--~--~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~ 513 (804)
-..+|.|++|+||....|.......+|.++.. ++-|.+.+. + -.+.|.||+||+|++.|.+||.. |+|+|.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~----~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~ 122 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGI----RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIK 122 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCC----cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHH
Confidence 34679999999999988877666677777664 222333332 2 36789999999999999999987 899999
Q ss_pred HhhcCCCeeEEeeccCCCCcceeeccCCC-----CccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhh
Q 003672 514 SALDGYKVCIFAYGQTGSGKTYTMMGKPE-----AQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDL 588 (804)
Q Consensus 514 ~~~~G~n~~v~~yG~t~sGKt~t~~G~~~-----~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DL 588 (804)
.|+.|||||||||||||+||||||+|+.. .+..+|||||++.+||..+. ..+..|.|+|||||+|||.|+||
T Consensus 123 eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le---~~~~EYsvKVSfLELYNEEl~DL 199 (1041)
T KOG0243|consen 123 EVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLE---AQGAEYSVKVSFLELYNEELTDL 199 (1041)
T ss_pred HHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHH---hcCCeEEEEEEehhhhhHHHHHh
Confidence 99999999999999999999999999532 34678999999999998864 45689999999999999999999
Q ss_pred cCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEE
Q 003672 589 LSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTL 668 (804)
Q Consensus 589 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l 668 (804)
|++.......+-... .+++. +..|++.|.|+.++.|.++.|++.+|..|...|.+++|.||.+|||||+||+|
T Consensus 200 La~~~~~~~~~~~k~----~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 200 LASEDTSDKKLRIKD----DSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cCCcccccccccccc----CCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 998754210000000 01111 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeec---cccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCccccccc
Q 003672 669 RIFGVNE---ATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQ 745 (804)
Q Consensus 669 ~i~~~~~---~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~ 745 (804)
.|.-.-. +.+-...|+|+||||||||..+++|+.+.|.+|+..||+||.+||+||.||..+..|||||+||||||||
T Consensus 273 tvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQ 352 (1041)
T KOG0243|consen 273 TVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQ 352 (1041)
T ss_pred EEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Confidence 8853322 2233457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCccccccc
Q 003672 746 PCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLK 795 (804)
Q Consensus 746 ~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~~~~~ 795 (804)
|+|||..+|+||+||||+..+++|||+||.||.|++.|+++|..+|..++
T Consensus 353 DSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K 402 (1041)
T KOG0243|consen 353 DSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMK 402 (1041)
T ss_pred HHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999998877664
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.1e-75 Score=604.43 Aligned_cols=332 Identities=38% Similarity=0.543 Sum_probs=303.4
Q ss_pred cccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcC
Q 003672 440 KGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDG 518 (804)
Q Consensus 440 k~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G 518 (804)
...|+|+||+||....+...+..- |.+|.+. -..+.+-...+..+|.||+||.|+++|.+||.. +.|+|+.|+.|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~-i~~~~~~---~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKF-IDCFENG---ENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcC-ccCCCCC---cceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 457999999999887776555443 4444443 224455556677999999999999999999998 67999999999
Q ss_pred CCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCC
Q 003672 519 YKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSD 598 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~ 598 (804)
||+||||||||||||||||.|...++...|||||++++||.++... ..+..|.|.|||+|||.|+|+|||++.
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~------ 154 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPE------ 154 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcC-cccceEEEEEEeehhhhhHHHHHhCcc------
Confidence 9999999999999999999999887788899999999999998753 446899999999999999999999975
Q ss_pred CccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecccc
Q 003672 599 LTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATE 678 (804)
Q Consensus 599 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~ 678 (804)
+..+.+.+|.+..+.|.|++...|.+++++.++|+.|..+|+++.|.||.+|||||.||+|+|.+.|..+.
T Consensus 155 ---------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~ 225 (607)
T KOG0240|consen 155 ---------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK 225 (607)
T ss_pred ---------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccC-CCCCCcCCCcccccccccCCCCceEEEE
Q 003672 679 QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKK-EDHIPYRNSKLTYLLQPCLGRDSKTLMF 757 (804)
Q Consensus 679 ~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~-~~~vp~r~s~LT~lL~~~l~g~s~t~~i 757 (804)
....|+|.||||||||+.+++|+.|.-+.|+.+||+||++|++||.||+.+ ..|||||||||||+|+|+|||||+|.+|
T Consensus 226 ~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlI 305 (607)
T KOG0240|consen 226 RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLI 305 (607)
T ss_pred hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEE
Confidence 999999999999999999999999999999999999999999999999988 7899999999999999999999999999
Q ss_pred EEeCCCCCChHHhHHHHHHHHHhhccccCCCccc
Q 003672 758 VNISPDSPSVGESLCSLRFAARVNACEIGVPSRQ 791 (804)
Q Consensus 758 ~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~ 791 (804)
+|++|+.-+..||.+||+|+.|++.|++.+..+-
T Consensus 306 i~csPss~n~~ET~STl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 306 ICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred EecCCccccccccccchhhccccccccchhhhhh
Confidence 9999999999999999999999999998776654
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=7.1e-73 Score=601.57 Aligned_cols=321 Identities=42% Similarity=0.603 Sum_probs=282.9
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHHH-HHHHHHhhcCCC
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLEI-SQLVQSALDGYK 520 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~-~~~v~~~~~G~n 520 (804)
.|++++|+||....|.......++....+. .+.+.. .....|.||+||+++++|++||+.+ .|+|+++++|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-----~~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSD-----TLVWHS-HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCC-----cEEeeC-CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 589999999999877755555555544331 222222 2368999999999999999999985 689999999999
Q ss_pred eeEEeeccCCCCcceeeccCCCCc-----cCCCchHHHHHHHHHhhhhhh---hcCcEEEEEEEEeeeechhhhhhcCCC
Q 003672 521 VCIFAYGQTGSGKTYTMMGKPEAQ-----EHKGLIPRSLEQIFQTSQFLL---VQGWKFKMQASMLEIYNETIRDLLSTS 592 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t~~G~~~~~-----~~~Gli~r~~~~lf~~~~~~~---~~~~~~~v~~S~~Ei~~e~v~DLL~~~ 592 (804)
+||||||||||||||||+|++..+ ..+|||||++++||..+.... ..+..|.|++||+|||||+|+|||++.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 999999999999999999987543 468999999999998876432 245789999999999999999999763
Q ss_pred CCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe
Q 003672 593 RAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG 672 (804)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~ 672 (804)
. ..+.+++++.+++++.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|+|..
T Consensus 156 ~---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~ 220 (337)
T cd01373 156 S---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIES 220 (337)
T ss_pred C---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEE
Confidence 2 4578999999999999999999999999999999999999999999999999999999999987
Q ss_pred eecccc--ceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhcc----CCCCCCcCCCcccccccc
Q 003672 673 VNEATE--QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK----KEDHIPYRNSKLTYLLQP 746 (804)
Q Consensus 673 ~~~~~~--~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~----~~~~vp~r~s~LT~lL~~ 746 (804)
.+.... ....|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+. +..|||||+||||+||+|
T Consensus 221 ~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~d 300 (337)
T cd01373 221 WEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRD 300 (337)
T ss_pred eecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHH
Confidence 654432 34579999999999999999999999999999999999999999999984 467999999999999999
Q ss_pred cCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 747 CLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 747 ~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
+|||||+|+||+||||+..+++||++||+||.|++.|
T Consensus 301 sLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 301 SLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred hcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999865
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.1e-73 Score=602.34 Aligned_cols=323 Identities=36% Similarity=0.534 Sum_probs=287.4
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccC---Ccc-----eeeecCCceeeEeeccccCCCCChhHHHHHH-HHHH
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQ---GRG-----IDLIQNGQKFPFTFDKVFNHEASQQDVFLEI-SQLV 512 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~---~~~-----i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~-~~~v 512 (804)
+|+|++|+||....|...+...++.++++.... ... -..........|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 478999999999887655666666666542100 000 0001234568999999999999999999985 5899
Q ss_pred HHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCC
Q 003672 513 QSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS 592 (804)
Q Consensus 513 ~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~ 592 (804)
+++++|+|+||||||||||||||||+|++ .++|||||++++||+.+.... .++.|.|++||+|||||+|+|||++.
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCC
Confidence 99999999999999999999999999987 467999999999999876543 47899999999999999999999864
Q ss_pred CCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe
Q 003672 593 RAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG 672 (804)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~ 672 (804)
.+.+.+++|+.+++++.|++++.|.|++++..+|+.|..+|.++.|.+|..|||||+||+|+|..
T Consensus 157 ---------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~ 221 (338)
T cd01370 157 ---------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQ 221 (338)
T ss_pred ---------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEE
Confidence 25688999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecc---ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC---CCCCcCCCcccccccc
Q 003672 673 VNEA---TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE---DHIPYRNSKLTYLLQP 746 (804)
Q Consensus 673 ~~~~---~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~---~~vp~r~s~LT~lL~~ 746 (804)
.+.. ......|+|+|||||||||..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+|+||+||+|
T Consensus 222 ~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d 301 (338)
T cd01370 222 KDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKD 301 (338)
T ss_pred EecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHH
Confidence 8765 556778999999999999999999999999999999999999999999999887 8999999999999999
Q ss_pred cCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 747 CLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 747 ~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
+|||||+|+||+||||...+++||++||+||.|++.|
T Consensus 302 ~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 302 SLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999865
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9e-73 Score=637.08 Aligned_cols=326 Identities=38% Similarity=0.606 Sum_probs=285.0
Q ss_pred cccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHHH-HHHHHHhhcC
Q 003672 440 KGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLEI-SQLVQSALDG 518 (804)
Q Consensus 440 k~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~-~~~v~~~~~G 518 (804)
...|+|++|+||....+. +.. .+....+ ..+.+ ..+.|.||+||+++++|.+||..+ .|+|+++++|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~~s~-----dsl~I----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdG 164 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQKMSN-----DSLTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAG 164 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEEcCC-----CeEEE----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 568999999999887642 222 2222221 12222 236899999999999999999985 6899999999
Q ss_pred CCeeEEeeccCCCCcceeeccCCC-------CccCCCchHHHHHHHHHhhhhh----hhcCcEEEEEEEEeeeechhhhh
Q 003672 519 YKVCIFAYGQTGSGKTYTMMGKPE-------AQEHKGLIPRSLEQIFQTSQFL----LVQGWKFKMQASMLEIYNETIRD 587 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~~G~~~-------~~~~~Gli~r~~~~lf~~~~~~----~~~~~~~~v~~S~~Ei~~e~v~D 587 (804)
||+||||||||||||||||+|+.. ....+|||||++.+||..+... ....+.|.|+|||+|||||+|||
T Consensus 165 yNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~D 244 (1320)
T PLN03188 165 FNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITD 244 (1320)
T ss_pred CcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCccee
Confidence 999999999999999999999753 2357899999999999987642 23467899999999999999999
Q ss_pred hcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEE
Q 003672 588 LLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFT 667 (804)
Q Consensus 588 LL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~ 667 (804)
||++.. +.+.|++|+.++++|.|++++.|.|.+++..+|..|..+|.++.|.+|..|||||+||+
T Consensus 245 LLsp~~---------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFt 309 (1320)
T PLN03188 245 LLDPSQ---------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFT 309 (1320)
T ss_pred cccccc---------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEE
Confidence 998642 45789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecc----ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhcc-----CCCCCCcCCC
Q 003672 668 LRIFGVNEA----TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-----KEDHIPYRNS 738 (804)
Q Consensus 668 l~i~~~~~~----~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~-----~~~~vp~r~s 738 (804)
|+|...... ......|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|+. +..|||||+|
T Consensus 310 I~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDS 389 (1320)
T PLN03188 310 CVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDS 389 (1320)
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcc
Confidence 999765432 2334579999999999999999999999999999999999999999999985 3569999999
Q ss_pred cccccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCcccc
Q 003672 739 KLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQL 792 (804)
Q Consensus 739 ~LT~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~~ 792 (804)
|||+||+|+|||||+|+|||||||...++.||++||+||.|++.|++.+..+..
T Consensus 390 KLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 390 RLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred hHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 999999999999999999999999999999999999999999999999887654
No 8
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-74 Score=627.80 Aligned_cols=333 Identities=36% Similarity=0.566 Sum_probs=295.3
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCC------C-CChhHHHHHHH-HHH
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNH------E-ASQQDVFLEIS-QLV 512 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~------~-~~q~~vf~~~~-~~v 512 (804)
..+.+.+||||+.+.|.......++.++.+... .|.-.++.....|.||..|.. . ++|..||..+. ++|
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~tt---ii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTT---IINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCcee---eecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 467899999999998887766666777766442 111112345566999999843 2 78999999986 799
Q ss_pred HHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCC
Q 003672 513 QSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS 592 (804)
Q Consensus 513 ~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~ 592 (804)
+.++.|||+||||||||||||||||||.+ .++++|||||.+++||..+.....++..|.|.|||+|||+|+|+|||+..
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~-~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ-EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC-CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 99999999999999999999999999987 45789999999999999999888889999999999999999999999842
Q ss_pred CCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe
Q 003672 593 RAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG 672 (804)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~ 672 (804)
. ++..+.+++.+--+++|.+|+.+.|+|..|+..+|..|.+.|++++|+||+.|||||+||+|.+.+
T Consensus 160 ~-------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQ 226 (1221)
T KOG0245|consen 160 K-------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQ 226 (1221)
T ss_pred C-------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEe
Confidence 2 346789999999999999999999999999999999999999999999999999999999999987
Q ss_pred eecc----ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC-------CCCCcCCCccc
Q 003672 673 VNEA----TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE-------DHIPYRNSKLT 741 (804)
Q Consensus 673 ~~~~----~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-------~~vp~r~s~LT 741 (804)
.... .+...+|+|+|||||||||.+.+|+.|+|++|+..|||||.+||.||.|||... .+||||||.||
T Consensus 227 k~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLT 306 (1221)
T KOG0245|consen 227 KKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLT 306 (1221)
T ss_pred eeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHH
Confidence 6543 235678999999999999999999999999999999999999999999998533 39999999999
Q ss_pred ccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCcc
Q 003672 742 YLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSR 790 (804)
Q Consensus 742 ~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~ 790 (804)
|||++.|||||||+||++|||.+.+|+|||+|||||.|++.|+.....+
T Consensus 307 WLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVN 355 (1221)
T KOG0245|consen 307 WLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVN 355 (1221)
T ss_pred HHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeC
Confidence 9999999999999999999999999999999999999999998876543
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.8e-71 Score=589.49 Aligned_cols=321 Identities=37% Similarity=0.557 Sum_probs=281.2
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccC---Ccceee-----ecCCceeeEeeccccCCCCChhHHHHH-HHHHH
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQ---GRGIDL-----IQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLV 512 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~---~~~i~l-----~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v 512 (804)
.|+|++|+||....|........+.++++.... +..... ........|.||+||+++++|++||+. +.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 589999999999887655555666665543210 000000 012356899999999999999999998 56899
Q ss_pred HHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCC
Q 003672 513 QSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS 592 (804)
Q Consensus 513 ~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~ 592 (804)
+++++|+|+||||||+|||||||||+|++ .++|||||++++||+.+.. |.|++||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCc
Confidence 99999999999999999999999999987 4789999999999988653 9999999999999999999876
Q ss_pred CCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe
Q 003672 593 RAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG 672 (804)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~ 672 (804)
... ....+.+.+++|..+++++.|++++.|.|++++..+|..|..+|.++.|.+|..|||||+||+|+|..
T Consensus 152 ~~~---------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~ 222 (345)
T cd01368 152 PSS---------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQ 222 (345)
T ss_pred ccc---------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEE
Confidence 431 12346789999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeccc--------cceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhcc------CCCCCCcCCC
Q 003672 673 VNEAT--------EQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK------KEDHIPYRNS 738 (804)
Q Consensus 673 ~~~~~--------~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~------~~~~vp~r~s 738 (804)
..... .....|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|+. +..|||||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~S 302 (345)
T cd01368 223 APGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDS 302 (345)
T ss_pred eccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCC
Confidence 65432 455689999999999999999999999999999999999999999999986 5689999999
Q ss_pred cccccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhh
Q 003672 739 KLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 739 ~LT~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~ 781 (804)
+||+||+|+|||||+|+||+||||+..+++||++||+||++++
T Consensus 303 kLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 303 KLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 10
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.4e-70 Score=578.06 Aligned_cols=315 Identities=34% Similarity=0.512 Sum_probs=278.5
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcc--c--CCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhh
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLE--S--QGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSAL 516 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~--~--~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~ 516 (804)
.|++++|+||..+.|...++...+.++.+.. . .+...+.........|.||+||+++++|++||+. +.|+|++++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~ 81 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVF 81 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999998876655555566655411 0 0111111112236899999999999999999998 678999999
Q ss_pred cCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCC
Q 003672 517 DGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGG 596 (804)
Q Consensus 517 ~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~ 596 (804)
+|+|+||||||+|||||||||+|++ .++|||||++++||+.+.... +.|.|++||+|||+|+|+|||++.
T Consensus 82 ~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~---- 151 (322)
T cd01367 82 EGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDR---- 151 (322)
T ss_pred CCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCc----
Confidence 9999999999999999999999987 467999999999998875432 789999999999999999999852
Q ss_pred CCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecc
Q 003672 597 SDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA 676 (804)
Q Consensus 597 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~ 676 (804)
+.+.+++++.+++++.|++++.|.|++++..+|+.|..+|.++.|.+|..|||||+||+|+|...+.
T Consensus 152 ------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~- 218 (322)
T cd01367 152 ------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL- 218 (322)
T ss_pred ------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-
Confidence 5688999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccceeeeeEEEEecCCCcccccCC-CCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccccccccCCCCceEE
Q 003672 677 TEQQVQGVLNLIDLAGSERLSRSG-ATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTL 755 (804)
Q Consensus 677 ~~~~~~~~l~~VDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l~g~s~t~ 755 (804)
....|+|+||||||||+....+ ..+.++.|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||||+|+
T Consensus 219 --~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~ 296 (322)
T cd01367 219 --NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTV 296 (322)
T ss_pred --CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEE
Confidence 5567999999999999998765 4678899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHhHHHHHHHHHhh
Q 003672 756 MFVNISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 756 ~i~~isp~~~~~~etl~tL~fa~r~~ 781 (804)
||+||||...++.||++||+||+|++
T Consensus 297 ~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 297 MIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=7e-70 Score=584.59 Aligned_cols=327 Identities=41% Similarity=0.605 Sum_probs=293.4
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC-------CceeeEeeccccCCC-------CChhHHHH
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN-------GQKFPFTFDKVFNHE-------ASQQDVFL 506 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~-------~~~~~~~fd~vf~~~-------~~q~~vf~ 506 (804)
.+|+|++|+||+...|...+....+.++.. .+.+... .....|.||+||++. ++|++||+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~------~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~ 74 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGK------VTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFE 74 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCC------EEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHH
Confidence 368999999999988776666666666652 2333332 356899999999998 99999999
Q ss_pred H-HHHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhh
Q 003672 507 E-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETI 585 (804)
Q Consensus 507 ~-~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v 585 (804)
. +.|+|+++++|+|+||||||+|||||||||+|++. .+|||||++++||+.+.......+.|.|++||+|||||+|
T Consensus 75 ~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v 151 (356)
T cd01365 75 DLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKV 151 (356)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCee
Confidence 8 56899999999999999999999999999999875 6799999999999988776666789999999999999999
Q ss_pred hhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeE
Q 003672 586 RDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFV 665 (804)
Q Consensus 586 ~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i 665 (804)
+|||++... ....+.+++++.+++++.|++++.|.|++++..+|+.|.++|..+.|.+|..|||||+|
T Consensus 152 ~DLL~~~~~------------~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 219 (356)
T cd01365 152 RDLLNPKKK------------NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAV 219 (356)
T ss_pred eeCCCCCcc------------CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEE
Confidence 999987541 23568899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeecc----ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccC--------CCCC
Q 003672 666 FTLRIFGVNEA----TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKK--------EDHI 733 (804)
Q Consensus 666 ~~l~i~~~~~~----~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~--------~~~v 733 (804)
|+|+|.+.... ......|+|+||||||||+..+.+..+.+++|+..||+||++|++||.+|+.+ ..||
T Consensus 220 ~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~i 299 (356)
T cd01365 220 FTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFI 299 (356)
T ss_pred EEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcC
Confidence 99999877644 44567899999999999999999999999999999999999999999999854 4799
Q ss_pred CcCCCcccccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCC
Q 003672 734 PYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVP 788 (804)
Q Consensus 734 p~r~s~LT~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~ 788 (804)
|||+|+||+||+|+|||+|+|+||+||||...+++||++||+||.|++.|+..+.
T Consensus 300 pyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 300 PYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred CCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 9999999999999999999999999999999999999999999999999998764
No 12
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.4e-69 Score=576.76 Aligned_cols=322 Identities=42% Similarity=0.647 Sum_probs=295.9
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCC
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGY 519 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~ 519 (804)
.+|++++|+||....+.......++.++.+ ..|.+........|.||+||+++++|++||+. +.|+|+++++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-----~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-----DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-----CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 368999999999887755555667777665 34556656778999999999999999999998 579999999999
Q ss_pred CeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCCC
Q 003672 520 KVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDL 599 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~ 599 (804)
|+||||||+|||||||||+|++.....+|||||++++||+.+... .....|.|++||+|||+|+|+|||++..
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 149 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSK------ 149 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCcc------
Confidence 999999999999999999999886678999999999999987654 4567899999999999999999998642
Q ss_pred ccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeeccccc
Q 003672 600 TRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQ 679 (804)
Q Consensus 600 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~~ 679 (804)
..+.++++..+++++.|++++.|.|++++..+|..|..+|..+.|.+|..|||||+||+|+|.+.+.....
T Consensus 150 ---------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~ 220 (325)
T cd01369 150 ---------DNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGS 220 (325)
T ss_pred ---------CCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred eeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC-CCCCcCCCcccccccccCCCCceEEEEE
Q 003672 680 QVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE-DHIPYRNSKLTYLLQPCLGRDSKTLMFV 758 (804)
Q Consensus 680 ~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-~~vp~r~s~LT~lL~~~l~g~s~t~~i~ 758 (804)
...|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+|+||+||+|+|||+|+|+||+
T Consensus 221 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~ 300 (325)
T cd01369 221 KKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLII 300 (325)
T ss_pred EEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEE
Confidence 889999999999999999999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred EeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 759 NISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 759 ~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
||||...+++||++||+||+|++.|
T Consensus 301 ~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 301 CCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999865
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.1e-69 Score=581.42 Aligned_cols=332 Identities=39% Similarity=0.559 Sum_probs=296.3
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC----CceeeEeeccccCCCCChhHHHHH-HHHHHHHh
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN----GQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSA 515 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~----~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~ 515 (804)
.+|.+++|+||....|.......++.++.+ +..|.+... .....|.||+||+++++|++||.. +.|+|+++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~----~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~ 77 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGS----SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEV 77 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCC----CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999887766556667777665 223444432 257899999999999999999998 67999999
Q ss_pred hcCCCeeEEeeccCCCCcceeeccCCCC--------ccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhh
Q 003672 516 LDGYKVCIFAYGQTGSGKTYTMMGKPEA--------QEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRD 587 (804)
Q Consensus 516 ~~G~n~~v~~yG~t~sGKt~t~~G~~~~--------~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~D 587 (804)
++|+|+||||||+|||||||||+|+... +..+|||||++.+||+.+... ...|.|++||+|||+|+|+|
T Consensus 78 ~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 78 LMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred hCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeee
Confidence 9999999999999999999999998754 456899999999999887543 67899999999999999999
Q ss_pred hcCCCCCCCCCCccccCCCCCCcceEEeC--CCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeE
Q 003672 588 LLSTSRAGGSDLTRTENGVPGKQYAIKHD--ANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFV 665 (804)
Q Consensus 588 LL~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i 665 (804)
||++... ..+++.+.++ ..+++++.|++++.|.|++++..+|..|..+|.++.|.+|..|||||+|
T Consensus 155 LL~~~~~------------~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 155 LLSSESD------------LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred CCCCccc------------cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 9987531 2467889999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeecc---ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccc
Q 003672 666 FTLRIFGVNEA---TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTY 742 (804)
Q Consensus 666 ~~l~i~~~~~~---~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~ 742 (804)
|+|+|...... ......|+|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|+.+..|||||+|+||+
T Consensus 223 ~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~ 302 (352)
T cd01364 223 FSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTR 302 (352)
T ss_pred EEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHH
Confidence 99999876543 233457999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCccc
Q 003672 743 LLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQ 791 (804)
Q Consensus 743 lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~ 791 (804)
||+|+|||||+|+||+||||+..++.||++||+||+|++.|++.|..+|
T Consensus 303 lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 303 LLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999999999887665
No 14
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.9e-69 Score=576.06 Aligned_cols=328 Identities=63% Similarity=0.965 Sum_probs=301.8
Q ss_pred cccccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC-CceeeEeeccccCCCCChhHHHHHHHHHHHHhhcC
Q 003672 440 KGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN-GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDG 518 (804)
Q Consensus 440 k~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~-~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G 518 (804)
++.|++++|+||....+. +.....+.+|... +..|.+... .....|.||+||+++++|++||..+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~---~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDED---GGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCC---ceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 478999999999887765 3344566666653 345566654 77899999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCC
Q 003672 519 YKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSD 598 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~ 598 (804)
+|+|||+||+|||||||||+|++ ..+|||||++++||..+.....+++.|.|++||+|||+|+|+|||++...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~---- 149 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA---- 149 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC----
Confidence 99999999999999999999987 46799999999999988877666899999999999999999999987531
Q ss_pred CccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecccc
Q 003672 599 LTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATE 678 (804)
Q Consensus 599 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~ 678 (804)
..+.+.+++++.+++++.|++++.|.|++++..+|..|..+|..+.|.+|..|||||+||+|+|.+.+....
T Consensus 150 --------~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~ 221 (329)
T cd01366 150 --------PKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTG 221 (329)
T ss_pred --------CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCC
Confidence 247789999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccccccccCCCCceEEEEE
Q 003672 679 QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFV 758 (804)
Q Consensus 679 ~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l~g~s~t~~i~ 758 (804)
....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||+++|+||+
T Consensus 222 ~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~ 301 (329)
T cd01366 222 EQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFV 301 (329)
T ss_pred cEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHhHHHHHHHHHhhccccC
Q 003672 759 NISPDSPSVGESLCSLRFAARVNACEIG 786 (804)
Q Consensus 759 ~isp~~~~~~etl~tL~fa~r~~~~~~~ 786 (804)
||||...+++||++||+||+|++.|++|
T Consensus 302 ~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 302 NISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999875
No 15
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-70 Score=616.07 Aligned_cols=333 Identities=38% Similarity=0.554 Sum_probs=287.8
Q ss_pred ccccccccccCCCCCCCCCCCcc-eEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcC
Q 003672 441 GNIRVFCRVRPLLPDDGVGADAS-IISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDG 518 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~-~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G 518 (804)
..|.+.+|+||..+.+...+... +....+..-.......+........|.||+||+++.+|.+||+. +.|+|.+++.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 47889999999887633323222 22221111100000000011115889999999999999999987 88999999999
Q ss_pred CCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCC
Q 003672 519 YKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSD 598 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~ 598 (804)
+|++|||||+|||||||||+|.+. +|||||+++.+||+.+.... ++.|.|.|||+|||||.|+|||+++.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~---~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~----- 155 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSED---DPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDG----- 155 (675)
T ss_pred cccceeeecCCCCCCceEEeccCC---CCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCC-----
Confidence 999999999999999999999875 57999999999999987544 88999999999999999999999753
Q ss_pred CccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecccc
Q 003672 599 LTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATE 678 (804)
Q Consensus 599 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~ 678 (804)
..+.+++|+.+++.|.||++..|.|.+++..+|..|..+|+++.|.+|..|||||+||+|.|........
T Consensus 156 ----------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~ 225 (675)
T KOG0242|consen 156 ----------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS 225 (675)
T ss_pred ----------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc
Confidence 4489999999999999999999999999999999999999999999999999999999999987765443
Q ss_pred ceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccC--CCCCCcCCCcccccccccCCCCceEEE
Q 003672 679 QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKK--EDHIPYRNSKLTYLLQPCLGRDSKTLM 756 (804)
Q Consensus 679 ~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~--~~~vp~r~s~LT~lL~~~l~g~s~t~~ 756 (804)
. ..++|+|||||||||...++..|.|++|+.+||+||.+|++||.+|+.+ ..|||||||||||||||+||||++|+|
T Consensus 226 ~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~ 304 (675)
T KOG0242|consen 226 S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAI 304 (675)
T ss_pred c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEE
Confidence 2 7789999999999999999999999999999999999999999999977 469999999999999999999999999
Q ss_pred EEEeCCCCCChHHhHHHHHHHHHhhccccCCCcccccc
Q 003672 757 FVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTL 794 (804)
Q Consensus 757 i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~~~~ 794 (804)
||||+|...+++||.+||.||+|++.|++....++...
T Consensus 305 I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~ 342 (675)
T KOG0242|consen 305 IATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILS 342 (675)
T ss_pred EEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecc
Confidence 99999999999999999999999999999887776543
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.2e-69 Score=570.54 Aligned_cols=315 Identities=39% Similarity=0.615 Sum_probs=281.3
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC---CceeeEeeccccCCCCChhHHHHH-HHHHHHHhhc
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN---GQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALD 517 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~---~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~ 517 (804)
+|++++|+||....+.. ...++...+........+.+... .....|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 47899999999877632 23344443333333445555543 356899999999999999999998 7899999999
Q ss_pred CCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCC
Q 003672 518 GYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGS 597 (804)
Q Consensus 518 G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~ 597 (804)
|+|+||||||+|||||||||+|++. ++|||||++++||+.+.. ..+.|.|++||+|||+|+|+|||++.
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~---~~Glipr~~~~Lf~~~~~---~~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPN---EPGLIPRTLSDLLRMGRK---QAWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcC---ccchHHHHHHHHHHHHhh---ccccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999999875 679999999999987643 34889999999999999999999864
Q ss_pred CCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeeccc
Q 003672 598 DLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT 677 (804)
Q Consensus 598 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~ 677 (804)
...+.+++++.|++++.|++++.|.|++++..+|..|..+|..+.|.+|..|||||+||+|+|.+.+..
T Consensus 148 ----------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~- 216 (319)
T cd01376 148 ----------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN- 216 (319)
T ss_pred ----------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-
Confidence 245779999999999999999999999999999999999999999999999999999999999877543
Q ss_pred cceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccccccccCCCCceEEEE
Q 003672 678 EQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMF 757 (804)
Q Consensus 678 ~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l~g~s~t~~i 757 (804)
....|+|+||||||||+....+..+.+++|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||+|+|+||
T Consensus 217 -~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i 295 (319)
T cd01376 217 -IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMV 295 (319)
T ss_pred -ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChHHhHHHHHHHHHhh
Q 003672 758 VNISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 758 ~~isp~~~~~~etl~tL~fa~r~~ 781 (804)
+||||...++.||++||+||+|++
T Consensus 296 ~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 296 ANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999975
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.3e-69 Score=574.00 Aligned_cols=322 Identities=43% Similarity=0.637 Sum_probs=286.0
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeec-----CCceeeEeeccccCCCCChhHHHHH-HHHHHHHh
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQ-----NGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSA 515 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~-----~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~ 515 (804)
.|++++|+||..+.+...+....+..+... ..|.+.. ....+.|.||+||+++++|.+||+. +.|+|+++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~ 77 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENR----GQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSV 77 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCC----CEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHH
Confidence 688999999998877654444444443221 2223322 2467899999999999999999998 67999999
Q ss_pred hcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCC
Q 003672 516 LDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAG 595 (804)
Q Consensus 516 ~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~ 595 (804)
++|+|+||||||+|||||||||+|++..+..+|||||++++||..+... ....|.|++||+|||+|+|+|||++..
T Consensus 78 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~-- 153 (333)
T cd01371 78 LEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA--ENVQFLVRVSYLEIYNEEVRDLLGKDQ-- 153 (333)
T ss_pred hCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc--cCccEEEEEEEEEeeCCeeeeCCCCCC--
Confidence 9999999999999999999999999877778999999999999887643 347899999999999999999998643
Q ss_pred CCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeec
Q 003672 596 GSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNE 675 (804)
Q Consensus 596 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~ 675 (804)
.+.+.+++++.++++|.|++++.|.|++++..+|..|.++|..+.|.+|..|||||+||+|+|...+.
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 25678999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c---ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCC-CCCcCCCcccccccccCCCC
Q 003672 676 A---TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED-HIPYRNSKLTYLLQPCLGRD 751 (804)
Q Consensus 676 ~---~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~-~vp~r~s~LT~lL~~~l~g~ 751 (804)
. ......|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|+.+.. |||||+|+||+||+++|||+
T Consensus 222 ~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~ 301 (333)
T cd01371 222 GEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGN 301 (333)
T ss_pred cCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCC
Confidence 3 3445579999999999999999999999999999999999999999999998876 99999999999999999999
Q ss_pred ceEEEEEEeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 752 SKTLMFVNISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 752 s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
|+|+||+||+|...++.||++||+||+|++.|
T Consensus 302 s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 302 SKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999865
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.1e-68 Score=566.02 Aligned_cols=323 Identities=42% Similarity=0.614 Sum_probs=280.4
Q ss_pred ccccccccCCCCCCCCCCCcceEecCCCcc------cCCcceeeecCCceeeEeeccccCCCCChhHHHHHH-HHHHHHh
Q 003672 443 IRVFCRVRPLLPDDGVGADASIISYPTSLE------SQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLEI-SQLVQSA 515 (804)
Q Consensus 443 i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~------~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~-~~~v~~~ 515 (804)
|++++|+||....+.. .....|+... ..+....+.+......|.||+||++ ++|++||+.+ .|+|+++
T Consensus 2 i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 2 IQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred eEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 7899999998863321 1122222100 0111122334456789999999999 9999999985 6899999
Q ss_pred hcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCC
Q 003672 516 LDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAG 595 (804)
Q Consensus 516 ~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~ 595 (804)
++|+|+||||||+|||||||||+|++....++|||||++.+||..+.. ..+..|.|++||+|||+|+|+|||++.+..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM--RATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHh--ccCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999887667899999999999988754 346789999999999999999999976431
Q ss_pred CCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEee--
Q 003672 596 GSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGV-- 673 (804)
Q Consensus 596 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~-- 673 (804)
....+.+.+++++.++++|.|++++.|.|++++..+|..|..+|.++.|.+|..|||||+||+|+|...
T Consensus 155 ---------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~ 225 (334)
T cd01375 155 ---------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSR 225 (334)
T ss_pred ---------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEec
Confidence 112367889999999999999999999999999999999999999999999999999999999999987
Q ss_pred eccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC-CCCCcCCCcccccccccCCCCc
Q 003672 674 NEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE-DHIPYRNSKLTYLLQPCLGRDS 752 (804)
Q Consensus 674 ~~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-~~vp~r~s~LT~lL~~~l~g~s 752 (804)
.........|+|+||||||||+..+.+..+..++|+..||+||.+|++||.+|+.+. .|||||+|+||+||+|+|||+|
T Consensus 226 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~ 305 (334)
T cd01375 226 EAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNC 305 (334)
T ss_pred CCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCc
Confidence 444556678999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred eEEEEEEeCCCCCChHHhHHHHHHHHHhh
Q 003672 753 KTLMFVNISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 753 ~t~~i~~isp~~~~~~etl~tL~fa~r~~ 781 (804)
+|+||+||||...++.||++||+||.|++
T Consensus 306 ~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 306 KTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999984
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.1e-68 Score=564.83 Aligned_cols=315 Identities=43% Similarity=0.622 Sum_probs=284.4
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCCC
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGYK 520 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~n 520 (804)
+|++++|+||....+.. ++...+.++.+ ..|.+..+.....|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-----~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-----NTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-----CEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 47899999998887663 34445555443 34445455678999999999999999999998 6789999999999
Q ss_pred eeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCCCc
Q 003672 521 VCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLT 600 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~ 600 (804)
+|||+||+|||||||||+|++ ..+|||||++++||..+... .+..|.|++||+|||||+|+|||++..
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~------- 142 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDT--PDREFLLRVSYLEIYNEKIKDLLSPSP------- 142 (321)
T ss_pred eeEEeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhcc--cCceEEEEEEEEEEEcCEeEEccCCCC-------
Confidence 999999999999999999986 46799999999999887543 367899999999999999999998752
Q ss_pred cccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeeccc---
Q 003672 601 RTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT--- 677 (804)
Q Consensus 601 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~--- 677 (804)
..+.+.+++.+++++.|++++.|.|++++..+|..|.++|..+.|.+|..|||||+||+|+|...+...
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~ 214 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSES 214 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCC
Confidence 568899999999999999999999999999999999999999999999999999999999999887655
Q ss_pred cceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC--CCCCcCCCcccccccccCCCCceEE
Q 003672 678 EQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE--DHIPYRNSKLTYLLQPCLGRDSKTL 755 (804)
Q Consensus 678 ~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~--~~vp~r~s~LT~lL~~~l~g~s~t~ 755 (804)
.....|+|+||||||+|+..+.+ .+.+++|+..||+||++|++||.+|+.++ .|||||+|+||+||+|+|||+|+|+
T Consensus 215 ~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~ 293 (321)
T cd01374 215 GTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293 (321)
T ss_pred CcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 56678999999999999999988 89999999999999999999999999886 8999999999999999999999999
Q ss_pred EEEEeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 756 MFVNISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 756 ~i~~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
||+||||...+++||++||+||+|++.|
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 294 IICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.8e-68 Score=568.38 Aligned_cols=323 Identities=41% Similarity=0.629 Sum_probs=286.1
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCCC
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGYK 520 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~n 520 (804)
.|++++|+||....+........+.+.... ..+.+ +..+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~----~~v~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGE----PQVTV---GTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCC----CEEEe---cCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 478999999998877655544444443321 12222 226789999999999999999998 5699999999999
Q ss_pred eeEEeeccCCCCcceeeccCCCC---ccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCC
Q 003672 521 VCIFAYGQTGSGKTYTMMGKPEA---QEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGS 597 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t~~G~~~~---~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~ 597 (804)
+||||||+|||||||||+|+... ...+|||||++++||..+.... ....|.|++||+|||||+|+|||++...
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~--- 150 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTS--- 150 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCccc---
Confidence 99999999999999999998642 5679999999999999876532 3578999999999999999999987541
Q ss_pred CCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecc-
Q 003672 598 DLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA- 676 (804)
Q Consensus 598 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~- 676 (804)
....+.+++++.+++++.|++++.|.|++++..+|..|..+|..+.|.+|..|||||+||+|+|.+.+..
T Consensus 151 ---------~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~ 221 (341)
T cd01372 151 ---------EKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNG 221 (341)
T ss_pred ---------CCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCC
Confidence 2357889999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ---------ccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC---CCCCcCCCcccccc
Q 003672 677 ---------TEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE---DHIPYRNSKLTYLL 744 (804)
Q Consensus 677 ---------~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~---~~vp~r~s~LT~lL 744 (804)
......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.++ .|||||+|+||+||
T Consensus 222 ~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL 301 (341)
T cd01372 222 PIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLL 301 (341)
T ss_pred ccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHH
Confidence 345678999999999999999999999999999999999999999999999876 69999999999999
Q ss_pred cccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccc
Q 003672 745 QPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACE 784 (804)
Q Consensus 745 ~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~ 784 (804)
+|+|||+|+|+||+||||...++.||++||+||+|++.|+
T Consensus 302 ~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 302 QDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999875
No 21
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-67 Score=563.46 Aligned_cols=332 Identities=37% Similarity=0.563 Sum_probs=289.8
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCccc---CCcceeeecCCceeeEeeccccCCC-------CChhHHHHHHHH
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSLES---QGRGIDLIQNGQKFPFTFDKVFNHE-------ASQQDVFLEISQ 510 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~---~~~~i~l~~~~~~~~~~fd~vf~~~-------~~q~~vf~~~~~ 510 (804)
.++++++||||+...|.......++.+...-.. .+..-.+...+.+++|.||+||.+. ++|+.||..+.+
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 578999999998887654443333333222110 0001112334778999999999664 679999999886
Q ss_pred -HHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhc
Q 003672 511 -LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLL 589 (804)
Q Consensus 511 -~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL 589 (804)
+|+++|+|||+||||||||||||||||+|.++ ++|||||.+..||..++....+...|.|.|||+|||||++||||
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~---QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLL 160 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAE---QPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLL 160 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCC---CCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhh
Confidence 99999999999999999999999999999874 78999999999999999888889999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEE
Q 003672 590 STSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLR 669 (804)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~ 669 (804)
+|... ...+.++++.--+.+|.||+.+.|.|.+++..+|..|.++|++..|+||..|||||+||.|.
T Consensus 161 dPk~s-------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslv 227 (1714)
T KOG0241|consen 161 DPKGS-------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLV 227 (1714)
T ss_pred CCCCC-------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEE
Confidence 98754 27788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeec----cccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccC------CCCCCcCCCc
Q 003672 670 IFGVNE----ATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKK------EDHIPYRNSK 739 (804)
Q Consensus 670 i~~~~~----~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~------~~~vp~r~s~ 739 (804)
|.+.-. .......|+|.||||||+||.++.++.+.|++|+.+||+||++|+.||.+|+.+ .++||||||.
T Consensus 228 vtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSV 307 (1714)
T KOG0241|consen 228 VTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSV 307 (1714)
T ss_pred EeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHH
Confidence 877633 334445789999999999999999999999999999999999999999999842 4599999999
Q ss_pred ccccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCC
Q 003672 740 LTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVP 788 (804)
Q Consensus 740 LT~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~ 788 (804)
||+||+|.|||||+|+||+||||.+++|+|||+|||||.|+++|++.-.
T Consensus 308 LTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~av 356 (1714)
T KOG0241|consen 308 LTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAV 356 (1714)
T ss_pred HHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999987654
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=9.2e-65 Score=543.90 Aligned_cols=327 Identities=49% Similarity=0.747 Sum_probs=294.5
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeec---CCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhc
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQ---NGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALD 517 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~---~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~ 517 (804)
.|++++|+||....+........+.++.. .+..|.+.. .+....|.||+||+++++|++||+. +.|+|+.+++
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~ 77 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDK---DGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLE 77 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCC---CCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhc
Confidence 47899999998887766555566666655 223444433 3677899999999999999999998 5689999999
Q ss_pred CCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCC
Q 003672 518 GYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGS 597 (804)
Q Consensus 518 G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~ 597 (804)
|+|+|||+||+|||||||||+|++. .+||||+++++||..+... ..+..|.|++||+|||+|+|+|||++.
T Consensus 78 G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~-~~~~~~~v~~S~~ei~~e~v~DLL~~~----- 148 (335)
T smart00129 78 GYNATIFAYGQTGSGKTYTMSGTPD---SPGIIPRALKDLFEKIDKL-EEGWQFQVKVSYLEIYNEKIRDLLNPS----- 148 (335)
T ss_pred CCceeEEEeCCCCCCCceEecCCCC---CCCHHHHHHHHHHHHhhhc-ccCceEEEEEEEEEEECCEEEECcCCC-----
Confidence 9999999999999999999999764 5799999999999887543 236789999999999999999999864
Q ss_pred CCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEee--ec
Q 003672 598 DLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGV--NE 675 (804)
Q Consensus 598 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~--~~ 675 (804)
.+.+.+.+++.+++++.|++++.|.|++++..+|..|..+|....|.+|..|||||+||+|+|.+. +.
T Consensus 149 ----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~ 218 (335)
T smart00129 149 ----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS 218 (335)
T ss_pred ----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC
Confidence 256889999999999999999999999999999999999999999999999999999999999966 66
Q ss_pred cccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhcc--CCCCCCcCCCcccccccccCCCCce
Q 003672 676 ATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK--KEDHIPYRNSKLTYLLQPCLGRDSK 753 (804)
Q Consensus 676 ~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~--~~~~vp~r~s~LT~lL~~~l~g~s~ 753 (804)
.......|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+. +..|||||+|+||+||+++|||+++
T Consensus 219 ~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~ 298 (335)
T smart00129 219 SSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSK 298 (335)
T ss_pred CCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCe
Confidence 67778899999999999999999999999999999999999999999999998 5679999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCcc
Q 003672 754 TLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSR 790 (804)
Q Consensus 754 t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~ 790 (804)
|+||+||||...+++||++||+||++++.|++.|+.+
T Consensus 299 ~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 299 TLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999999999999999999999999999999988653
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.4e-65 Score=549.51 Aligned_cols=324 Identities=43% Similarity=0.668 Sum_probs=278.5
Q ss_pred cccCCCCCCCCCCCcceEecCCCc-ccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCCCeeEEe
Q 003672 448 RVRPLLPDDGVGADASIISYPTSL-ESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGYKVCIFA 525 (804)
Q Consensus 448 r~r~~~~~e~~~~~~~~~~~p~~~-~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~n~~v~~ 525 (804)
|+||+...+........+.++... .................|.||+||+++++|++||.. +.|+|+++++|+|+|||+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 678887766655554444443211 111112223345678999999999999999999998 689999999999999999
Q ss_pred eccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhc-CcEEEEEEEEeeeechhhhhhcCCCCCCCCCCccccC
Q 003672 526 YGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQ-GWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTEN 604 (804)
Q Consensus 526 yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~-~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~~~~~ 604 (804)
||+|||||||||+|+ .....+|||||++.+||..+...... ++.|.|++||+|||+|+|+|||++...
T Consensus 81 yG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~---------- 149 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS---------- 149 (335)
T ss_dssp EESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS----------
T ss_pred ecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc----------
Confidence 999999999999998 22457899999999999988765443 589999999999999999999998631
Q ss_pred CCCCCcceEEeCCCCC-eEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeeccccc----
Q 003672 605 GVPGKQYAIKHDANGN-THVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQ---- 679 (804)
Q Consensus 605 ~~~~~~~~i~~~~~~~-~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~~---- 679 (804)
.....+.+++++..+ +++.|++++.|.|.+++..+|..|.++|....+.+|..|||||+||+|+|.+.+.....
T Consensus 150 -~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~ 228 (335)
T PF00225_consen 150 -KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEES 228 (335)
T ss_dssp -STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEE
T ss_pred -ccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccc
Confidence 123578999999864 99999999999999999999999999999999999999999999999999998876554
Q ss_pred eeeeeEEEEecCCCcccccCCCC-ccchHHhHHHHHhHHHHHHHHHHhccC--CCCCCcCCCcccccccccCCCCceEEE
Q 003672 680 QVQGVLNLIDLAGSERLSRSGAT-GDRLKETQAINKSLSSLSDVIFALAKK--EDHIPYRNSKLTYLLQPCLGRDSKTLM 756 (804)
Q Consensus 680 ~~~~~l~~VDLagse~~~~~~~~-~~~~~e~~~in~sl~~L~~vi~~l~~~--~~~vp~r~s~LT~lL~~~l~g~s~t~~ 756 (804)
...|+|+||||||+|+..+.+.. +.+.+|+..||+||.+|++||.+|+.+ ..|||||+|+||+||+|+|||+|+|+|
T Consensus 229 ~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~ 308 (335)
T PF00225_consen 229 VKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTIL 308 (335)
T ss_dssp EEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEE
T ss_pred eeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceeccccccccccee
Confidence 47899999999999999988864 778999999999999999999999998 899999999999999999999999999
Q ss_pred EEEeCCCCCChHHhHHHHHHHHHhhcc
Q 003672 757 FVNISPDSPSVGESLCSLRFAARVNAC 783 (804)
Q Consensus 757 i~~isp~~~~~~etl~tL~fa~r~~~~ 783 (804)
|+||||...++++|++||+||.+++.|
T Consensus 309 I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 309 IVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999865
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-65 Score=524.36 Aligned_cols=330 Identities=32% Similarity=0.462 Sum_probs=297.8
Q ss_pred ccccccccccCCCCCCCCCCCcceEecCCCc----ccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHh
Q 003672 441 GNIRVFCRVRPLLPDDGVGADASIISYPTSL----ESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSA 515 (804)
Q Consensus 441 ~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~----~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~ 515 (804)
.+|-+++|.||+...|....+-.+|++|... +.....++|+..-+.+.|.||.+||+.++++.||.. +.|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 4688999999999999888888899999863 445677888888889999999999999999999986 78999999
Q ss_pred hcCCCeeEEeeccCCCCcceeeccCCCC---ccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCC
Q 003672 516 LDGYKVCIFAYGQTGSGKTYTMMGKPEA---QEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTS 592 (804)
Q Consensus 516 ~~G~n~~v~~yG~t~sGKt~t~~G~~~~---~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~ 592 (804)
|+|--+|+||||||||||||||.|.... ....||...+..++|..+....-....+.|++||+|||+.+|||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 9999999999999999999999876442 235699999999999887655555678999999999999999999985
Q ss_pred CCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEe
Q 003672 593 RAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG 672 (804)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~ 672 (804)
.+.+.+++|.++.++|.||++..|.+.+++..+|+.|...|++|.|..|+.|||||+||.|-+..
T Consensus 367 ---------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~ 431 (676)
T KOG0246|consen 367 ---------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRK 431 (676)
T ss_pred ---------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeec
Confidence 37799999999999999999999999999999999999999999999999999999999998864
Q ss_pred eeccccceeeeeEEEEecCCCcccccCCCCc-cchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcccccccccCCC-
Q 003672 673 VNEATEQQVQGVLNLIDLAGSERLSRSGATG-DRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGR- 750 (804)
Q Consensus 673 ~~~~~~~~~~~~l~~VDLagse~~~~~~~~~-~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l~g- 750 (804)
.- ....+|++.||||||+||.......+ ++-.|+..|||||.||..||.||..++.|+|||.||||.+|+|+|=|
T Consensus 432 ~~---~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 432 HG---EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred CC---cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCC
Confidence 32 24678999999999999988765543 45579999999999999999999999999999999999999999988
Q ss_pred CceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCc
Q 003672 751 DSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPS 789 (804)
Q Consensus 751 ~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~ 789 (804)
||+|+||+||||...+.++||+|||||+||+.......+
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~ 547 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGP 547 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCc
Confidence 999999999999999999999999999999988776654
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9e-64 Score=535.62 Aligned_cols=318 Identities=47% Similarity=0.701 Sum_probs=285.3
Q ss_pred cccccccccCCCCCCCCCCCcceEecCCCcccCCcceeeecC-----CceeeEeeccccCCCCChhHHHHH-HHHHHHHh
Q 003672 442 NIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDLIQN-----GQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSA 515 (804)
Q Consensus 442 ~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~-----~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~ 515 (804)
.|++++|+||....+.. .....+.++.. +.|.+... .....|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~ 74 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDN-----KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESV 74 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCC-----CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHH
Confidence 47899999998876532 22345555553 33444432 457999999999999999999998 55899999
Q ss_pred hcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCC
Q 003672 516 LDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAG 595 (804)
Q Consensus 516 ~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~ 595 (804)
++|+|+|||+||+|||||||||+|++ ..+||||+++++||..+.........|.|++||+|||+|+|+|||++..
T Consensus 75 ~~G~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~-- 149 (328)
T cd00106 75 LEGYNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP-- 149 (328)
T ss_pred hCCCceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--
Confidence 99999999999999999999999987 4679999999999998776554467899999999999999999998752
Q ss_pred CCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeec
Q 003672 596 GSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNE 675 (804)
Q Consensus 596 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~ 675 (804)
....+.+++++.+++++.|++++.|.|++++..+|..|..+|..+.|.+|..|||||+||+|+|...+.
T Consensus 150 -----------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 218 (328)
T cd00106 150 -----------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNT 218 (328)
T ss_pred -----------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEec
Confidence 236788999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccc--eeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCC--CCCCcCCCcccccccccCCCC
Q 003672 676 ATEQ--QVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKE--DHIPYRNSKLTYLLQPCLGRD 751 (804)
Q Consensus 676 ~~~~--~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~--~~vp~r~s~LT~lL~~~l~g~ 751 (804)
.... ...|+|+||||||+|+....+..+.++.|+..||+||.+|++||.+|+.+. .|||||+|+||+||+|+|||+
T Consensus 219 ~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~ 298 (328)
T cd00106 219 TNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGN 298 (328)
T ss_pred CCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCC
Confidence 6654 788999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred ceEEEEEEeCCCCCChHHhHHHHHHHHHhh
Q 003672 752 SKTLMFVNISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 752 s~t~~i~~isp~~~~~~etl~tL~fa~r~~ 781 (804)
++|+||+||||...++.||++||+||+|++
T Consensus 299 ~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 299 SKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999975
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-62 Score=522.27 Aligned_cols=336 Identities=36% Similarity=0.529 Sum_probs=283.3
Q ss_pred hhcccccccccccCCCC-CCCCCCCcceEecCCCccc---CCccee----eecCCceeeEeeccccCCCCChhHHHHH-H
Q 003672 438 ELKGNIRVFCRVRPLLP-DDGVGADASIISYPTSLES---QGRGID----LIQNGQKFPFTFDKVFNHEASQQDVFLE-I 508 (804)
Q Consensus 438 ~Lk~~i~~~~r~r~~~~-~e~~~~~~~~~~~p~~~~~---~~~~i~----l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~ 508 (804)
+....+.++||++|... .+.. .++.+-.+.+. .+..+. ....-....|.|.+||+|+++|.+||.. +
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~----g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDE----GCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred hhhcchheeEeecCCCCCcccc----ceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 45667889999999773 2222 11222211110 000000 1112355789999999999999999998 6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhh------------------------
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFL------------------------ 564 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~------------------------ 564 (804)
.|+|.+++.|.|..+|+||.|||||||||+|++. .+||+||+|.-||..++..
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~---~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~al 180 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPD---RPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDAL 180 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCC---CCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHH
Confidence 6899999999999999999999999999999875 5699999999999754310
Q ss_pred ---------------------------------------hhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCCCccccCC
Q 003672 565 ---------------------------------------LVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENG 605 (804)
Q Consensus 565 ---------------------------------------~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~~~~~~ 605 (804)
.+.+..|.|+|||+||||+-|||||.+.... +
T Consensus 181 L~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q---------~ 251 (809)
T KOG0247|consen 181 LQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ---------G 251 (809)
T ss_pred HhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc---------c
Confidence 0124579999999999999999999876432 2
Q ss_pred CCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeecc--ccceeee
Q 003672 606 VPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEA--TEQQVQG 683 (804)
Q Consensus 606 ~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~--~~~~~~~ 683 (804)
...+...+++|.+|..+|.|++||.|+|.+|+..||..|.++|++++|..|..|||||+||+|.|.+.... ......|
T Consensus 252 ~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vS 331 (809)
T KOG0247|consen 252 KLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVS 331 (809)
T ss_pred hhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEE
Confidence 23344668899999999999999999999999999999999999999999999999999999999988776 5667789
Q ss_pred eEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccC-----CCCCCcCCCcccccccccCCCCceEEEEE
Q 003672 684 VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKK-----EDHIPYRNSKLTYLLQPCLGRDSKTLMFV 758 (804)
Q Consensus 684 ~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~-----~~~vp~r~s~LT~lL~~~l~g~s~t~~i~ 758 (804)
.|.|||||||||..+++..|.|++|+.+||+||++|+.||.+|..+ +.+||||+||||++++.+|.|..+++||+
T Consensus 332 qlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV 411 (809)
T KOG0247|consen 332 QLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIV 411 (809)
T ss_pred eeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999854 46999999999999999999999999999
Q ss_pred EeCCCCCChHHhHHHHHHHHHhhccccCCCc
Q 003672 759 NISPDSPSVGESLCSLRFAARVNACEIGVPS 789 (804)
Q Consensus 759 ~isp~~~~~~etl~tL~fa~r~~~~~~~~~~ 789 (804)
||+|.+.+|+|+++.|+||+-...+.+..|.
T Consensus 412 ~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 412 CVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred ecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 9999999999999999999999988877664
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-59 Score=516.28 Aligned_cols=319 Identities=36% Similarity=0.528 Sum_probs=277.4
Q ss_pred ccCCCCCCCCCCCcceEe-cCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCCCeeEEee
Q 003672 449 VRPLLPDDGVGADASIIS-YPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGYKVCIFAY 526 (804)
Q Consensus 449 ~r~~~~~e~~~~~~~~~~-~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~n~~v~~y 526 (804)
+||+...+...+-.-++. +|... .| ..|...+|.||+||+...+|.++|+. |.|+++.+++|||++|+||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~p-----qv---~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTP-----QV---AIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCC-----ce---eecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 467776666545444444 33321 12 23567899999999999999999987 8899999999999999999
Q ss_pred ccCCCCcceeeccCCCCccC-CCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCCCccccCC
Q 003672 527 GQTGSGKTYTMMGKPEAQEH-KGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENG 605 (804)
Q Consensus 527 G~t~sGKt~t~~G~~~~~~~-~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~~~~~~ 605 (804)
|||||||||||.+....... .|+|||++..+|..+..... ..|.|.|||+|||++.|+|||.|.+.
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~--~~f~i~vs~vely~e~v~dl~~~~~~----------- 139 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES--FVFRITVSFVELYNEEVLDLLKPSRL----------- 139 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc--cceeeeeeeeeccchhhhhhcChhhh-----------
Confidence 99999999999887433333 59999999999998865433 78999999999999999999996543
Q ss_pred CCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEee-eccccceeeee
Q 003672 606 VPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGV-NEATEQQVQGV 684 (804)
Q Consensus 606 ~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~-~~~~~~~~~~~ 684 (804)
...+.+.+ +.|.+.+.+++.+.|.+..++...|..|.-.|++++|.||++|||||+|||+.+.+. .........++
T Consensus 140 --~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sK 216 (913)
T KOG0244|consen 140 --KANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSK 216 (913)
T ss_pred --hhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhh
Confidence 12344555 788999999999999999999999999999999999999999999999999999764 33344467799
Q ss_pred EEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCC--CCCcCCCcccccccccCCCCceEEEEEEeCC
Q 003672 685 LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKED--HIPYRNSKLTYLLQPCLGRDSKTLMFVNISP 762 (804)
Q Consensus 685 l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~--~vp~r~s~LT~lL~~~l~g~s~t~~i~~isp 762 (804)
|+|||||||||..++++.|+|++|+.+||.+|++|++||.||..... |||||+|+||+||||+||||+.|+||+||||
T Consensus 217 lhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSp 296 (913)
T KOG0244|consen 217 LHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISP 296 (913)
T ss_pred hheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecCh
Confidence 99999999999999999999999999999999999999999987655 9999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHHHhhccccCCCccc
Q 003672 763 DSPSVGESLCSLRFAARVNACEIGVPSRQ 791 (804)
Q Consensus 763 ~~~~~~etl~tL~fa~r~~~~~~~~~~~~ 791 (804)
...++.||++||+||.|++.|++.|..++
T Consensus 297 adsn~~EtlnTl~ya~Rak~iknk~vvN~ 325 (913)
T KOG0244|consen 297 ADSNAQETLNTLRYADRAKQIKNKPVVNQ 325 (913)
T ss_pred hhhhhhhHHHHHHHhhHHHHhcccccccc
Confidence 99999999999999999999999998776
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-55 Score=491.22 Aligned_cols=287 Identities=44% Similarity=0.645 Sum_probs=269.9
Q ss_pred eeeEeeccccCCCCChhHHHHH-HHHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhh
Q 003672 486 KFPFTFDKVFNHEASQQDVFLE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFL 564 (804)
Q Consensus 486 ~~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~ 564 (804)
...|.||+||++.++|++||.. +.|++++++.||||||||||||||||||||.|.. ..+||||+++..||+.+...
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~---~~~Gii~~~l~~lf~~l~~~ 131 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE---EEPGIIPLSLKELFSKLEDL 131 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc---cccchHHHHHHHHHHHHHhc
Confidence 6779999999999999999988 7789999999999999999999999999999987 46899999999999987655
Q ss_pred hhcCcEEEEEEEEeeeechhhhhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHH
Q 003672 565 LVQGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQA 644 (804)
Q Consensus 565 ~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~ 644 (804)
.. +..|.|.+||+|||||+++|||.+... .+.+..+..+++.+.+++.+.|.+.+++..+|..+
T Consensus 132 ~~-~~~~~v~is~lEiYnEk~~DLl~~~~~---------------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~ 195 (568)
T COG5059 132 SM-TKDFAVSISYLEIYNEKIYDLLSPNEE---------------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKG 195 (568)
T ss_pred cc-CcceeeEeehhHHHhhHHHhhccCccc---------------cccccccCCCceEeecceEEecCChHHHHHHHHHh
Confidence 44 678999999999999999999997542 16788999999999999999999999999999999
Q ss_pred HhccccccccCcccCCCceeEEEEEEEeeeccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHH
Q 003672 645 AQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIF 724 (804)
Q Consensus 645 ~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~ 724 (804)
..+|.++.|.+|+.|||||+||++.+...+...+....++|.||||||||+....+..+.+++|+..||+||.+|++||.
T Consensus 196 ~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~ 275 (568)
T COG5059 196 EKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVIN 275 (568)
T ss_pred hhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHH
Confidence 99999999999999999999999999999888877777899999999999999999999999999999999999999999
Q ss_pred Hhcc--CCCCCCcCCCcccccccccCCCCceEEEEEEeCCCCCChHHhHHHHHHHHHhhccccCCCccc
Q 003672 725 ALAK--KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQ 791 (804)
Q Consensus 725 ~l~~--~~~~vp~r~s~LT~lL~~~l~g~s~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~ 791 (804)
+|.. +..|||||+|+|||+|+++|||+++|+|||||+|...++++|.+||+||.|.+.|++.+....
T Consensus 276 ~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 276 ALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9996 788999999999999999999999999999999999999999999999999999999887765
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.1e-46 Score=366.90 Aligned_cols=176 Identities=57% Similarity=0.860 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeech
Q 003672 504 VFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNE 583 (804)
Q Consensus 504 vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e 583 (804)
||..+.|+|+.+++|+|+|||+||+|||||||||+|++ .+.||||+++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~--------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD--------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH---------------------------
Confidence 99997799999999999999999999999999999987 467999999887
Q ss_pred hhhhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCce
Q 003672 584 TIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSH 663 (804)
Q Consensus 584 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH 663 (804)
+..++..|..+|.++.|.+|..|||||
T Consensus 58 -----------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH 84 (186)
T cd01363 58 -----------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSH 84 (186)
T ss_pred -----------------------------------------------------HHHHHhhccccccccccCCCCccCccc
Confidence 566777888999999999999999999
Q ss_pred eEEEEEEEeeeccc---cceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCCCcc
Q 003672 664 FVFTLRIFGVNEAT---EQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKL 740 (804)
Q Consensus 664 ~i~~l~i~~~~~~~---~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~s~L 740 (804)
+||+|+|...+... .....++|+||||||||+..+.+..+.+++|+..||+||++|++||.+|+.++.|||||+|+|
T Consensus 85 ~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkL 164 (186)
T cd01363 85 SVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKL 164 (186)
T ss_pred EEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHH
Confidence 99999999887655 566789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceEEEEEEeCC
Q 003672 741 TYLLQPCLGRDSKTLMFVNISP 762 (804)
Q Consensus 741 T~lL~~~l~g~s~t~~i~~isp 762 (804)
|+||+|+|||||+|+||+||||
T Consensus 165 T~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 165 TRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999
No 30
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.66 E-value=1.1e-11 Score=156.91 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhh
Q 003672 373 IRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNT 435 (804)
Q Consensus 373 l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~ 435 (804)
+..+..++..+..++..+......+..+|+.+..++.++..++.++......+...+..+...
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1015 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888877777777778888888888888887777777666666655555443
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.64 E-value=2.5e-11 Score=150.41 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 250 LQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVA 329 (804)
Q Consensus 250 l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~ 329 (804)
+..++..+......+..++..+..++..+..++..+...+..+...+..+..++..+..++..+...+...+.+...+..
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~ 891 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333334444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhhHHHHHH
Q 003672 330 QVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIR---------IMEIQLAAANEKLKMADLSSMETRAE 400 (804)
Q Consensus 330 ~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~---------~l~~~l~~l~~~l~~~~~~~~~~~~e 400 (804)
++..+...+..+...+..+...+..+......+...+......+. .++..+..++.++..++..+..+.++
T Consensus 892 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee 971 (1163)
T COG1196 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEE 971 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 444444444444444444444444443333333333333333321 57788888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 003672 401 FEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHN 434 (804)
Q Consensus 401 ~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 434 (804)
|+.+..++.++..++.++......+...+..+.+
T Consensus 972 ~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 972 YEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888776666555555443
No 32
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.62 E-value=1.9e-11 Score=151.53 Aligned_cols=409 Identities=17% Similarity=0.226 Sum_probs=168.5
Q ss_pred CCCCCcccccccHHHHHHHhccccC---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003672 69 TEGSDCGTIEFTKEEVEALLNEKPK---------TKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALE 139 (804)
Q Consensus 69 g~~~~~~~~~~~~eev~~ll~e~~~---------~~k~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~ 139 (804)
|.+..+..+ +..++|..+.+.++. .....|+.+.++....+.+....+..+......+...++.|+.+.+
T Consensus 132 gi~~~~~~i-V~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~ 210 (1163)
T COG1196 132 GIGKESYSI-VSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAE 210 (1163)
T ss_pred CCCCCCCce-eecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443433 556666666554443 1222345555555555555555555444444444455555554444
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 140 STEKKLSDTEMEMKN--------RESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQ 211 (804)
Q Consensus 140 ~l~~~~~ele~~l~~--------~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~e 211 (804)
... ++..+..++.. ++..+..++..+...+..++..+..+..........+...+..+..+......++..
T Consensus 211 ~a~-~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~ 289 (1163)
T COG1196 211 KAE-RYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289 (1163)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222222111 333334444444444444444444444443333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003672 212 LEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLAL 291 (804)
Q Consensus 212 l~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~ 291 (804)
+..+...+..++.++..+......+......+......+...+......+...+.....+......+......++..+.
T Consensus 290 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~- 368 (1163)
T COG1196 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS- 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333333333333333333333333333333333333333333333333221111222222222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 003672 292 SRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQRE 371 (804)
Q Consensus 292 ~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~ 371 (804)
............+..++..+..++.....++..+..++..++..+..+...+..+..++..+..++..+...+.....
T Consensus 369 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (1163)
T COG1196 369 --ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNE 446 (1163)
T ss_pred --HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 011122222233333333333333333333334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHhhhhhhhhhhccccccccc
Q 003672 372 QIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIE---GEKLRKKLHNTILELKGNIRVFCR 448 (804)
Q Consensus 372 ~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~---~~~~~~~l~~~i~~Lk~~i~~~~r 448 (804)
++..++..+..+...+..++..+..+...+..+...+..+..++..+...... ...........+..+.+.+..+++
T Consensus 447 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~ 526 (1163)
T COG1196 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIK 526 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcC
Confidence 44444444444444444444444444444444444444444444443322211 111222233336778888999988
Q ss_pred ccC--CCCCCCCCCCcceEecCCCcccCCcceeeec
Q 003672 449 VRP--LLPDDGVGADASIISYPTSLESQGRGIDLIQ 482 (804)
Q Consensus 449 ~r~--~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~ 482 (804)
+.+ ..+.+.+.+.++...++.+...+..+|.+..
T Consensus 527 v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk 562 (1163)
T COG1196 527 VKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLK 562 (1163)
T ss_pred cChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHh
Confidence 866 3344555555555555555555555666654
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.9e-11 Score=136.53 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=55.6
Q ss_pred ccCcccCcccCCCCCCCccceeccCcccccccccCCCCCCCCcccccccHHHHHHHhccccC--cchhhHHHHHHHHHHH
Q 003672 32 GAGRTTGATSTGTGRPRQAFAVVNNRQDVSAASDMASTEGSDCGTIEFTKEEVEALLNEKPK--TKKFDLKAKIEQMTEH 109 (804)
Q Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~eev~~ll~e~~~--~~k~~~k~k~e~l~~~ 109 (804)
||| ||||+.+..|+|..+-. + ...++++++.+.....+ ........+...+.+.
T Consensus 752 Gtm-tGGG~~v~~g~mg~~~~-------------~----------t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~ 807 (1293)
T KOG0996|consen 752 GTM-TGGGKKVKGGRMGTSIR-------------V----------TGVSKESVEKLERALSKMSDKARQHQEQLHELEER 807 (1293)
T ss_pred ccc-cCCCCcCCCCCCCCccc-------------c----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 89999998886533210 1 23578888888766544 2222334444455555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 110 NKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 110 l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
+..++..+..++.....+..+...+...++.++.++.+++..
T Consensus 808 ~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 808 VRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444455555555555555555555555
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.57 E-value=6.3e-11 Score=150.19 Aligned_cols=107 Identities=17% Similarity=0.279 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 309 EVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLK 388 (804)
Q Consensus 309 el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~ 388 (804)
++..++.++..+..++..+..++..+..++..+...+..+...+..+..++..++..+..+...+..++.++..+...+.
T Consensus 386 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 465 (1164)
T TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333344444444444433333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003672 389 MADLSSMETRAEFEEKQRVAQELQERL 415 (804)
Q Consensus 389 ~~~~~~~~~~~e~~~l~~~l~~l~~~~ 415 (804)
.+...+..+..++..+...+..+..++
T Consensus 466 ~~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333333
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.56 E-value=2.9e-10 Score=144.58 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003672 373 IRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEK 427 (804)
Q Consensus 373 l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~ 427 (804)
+..++.++..+...+..++.....+..+|+.+..++.++.....++...+.++..
T Consensus 967 ~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333344444444444444444444444443333
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.54 E-value=3.9e-10 Score=143.42 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhc
Q 003672 380 LAAANEKLKMADLSSMETRAEFEEKQ----RVAQELQERLAEAEHQLIEGEKLRKKLHNTILELK 440 (804)
Q Consensus 380 l~~l~~~l~~~~~~~~~~~~e~~~l~----~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk 440 (804)
+..++..+..++. ..++|+.+. +++.++..++.++...+..+...+..+...+..+.
T Consensus 967 ~~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 967 EEEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 333444444 66777777777777666666666666666555554
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=99.46 E-value=3.4e-09 Score=129.58 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 003672 634 ISEISSLLRQ 643 (804)
Q Consensus 634 ~~e~~~ll~~ 643 (804)
...+..+|..
T Consensus 829 ~~~~~~~l~~ 838 (880)
T PRK02224 829 VSQLVDLVES 838 (880)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 38
>PRK02224 chromosome segregation protein; Provisional
Probab=99.46 E-value=5.4e-09 Score=127.83 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=16.1
Q ss_pred HHHHHHhccccC--cchhhHHHHHHHHHHHHHHHHHHHHH
Q 003672 82 EEVEALLNEKPK--TKKFDLKAKIEQMTEHNKRFKLCIKW 119 (804)
Q Consensus 82 eev~~ll~e~~~--~~k~~~k~k~e~l~~~l~~l~~~i~~ 119 (804)
+++..+...... ...-.+..++..+...+.++...+..
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544433322 22233444445544444444443333
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.45 E-value=1e-08 Score=126.51 Aligned_cols=10 Identities=50% Similarity=0.411 Sum_probs=4.9
Q ss_pred ccHHHHHHHh
Q 003672 79 FTKEEVEALL 88 (804)
Q Consensus 79 ~~~eev~~ll 88 (804)
|-+-.|.+.+
T Consensus 755 FfkaGvla~L 764 (1930)
T KOG0161|consen 755 FFKAGVLAHL 764 (1930)
T ss_pred eehHHHHHHH
Confidence 5555554443
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.44 E-value=1.3e-08 Score=125.52 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=11.8
Q ss_pred HhhHHHHHHHhhhhhhhhhhcccccccc
Q 003672 420 HQLIEGEKLRKKLHNTILELKGNIRVFC 447 (804)
Q Consensus 420 ~~l~~~~~~~~~l~~~i~~Lk~~i~~~~ 447 (804)
.++.++......+...-..+...+..++
T Consensus 1196 ~qle~l~~~k~~lekek~~lq~e~~~l~ 1223 (1930)
T KOG0161|consen 1196 EQLEQLQKDKAKLEKEKSDLQREIADLA 1223 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.40 E-value=4.5e-08 Score=106.41 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 100 KAKIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 100 k~k~e~l~~~l~~l~~~i~~l 120 (804)
..+++.+..+..+|......+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~L 162 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQL 162 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.39 E-value=1.6e-07 Score=104.27 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=7.7
Q ss_pred ccccCCCCChhHHHH
Q 003672 492 DKVFNHEASQQDVFL 506 (804)
Q Consensus 492 d~vf~~~~~q~~vf~ 506 (804)
+.||-.-+.++-.|.
T Consensus 652 eavt~ghageqyaf~ 666 (1243)
T KOG0971|consen 652 EAVTRGHAGEQYAFA 666 (1243)
T ss_pred hhccccchhHHHHHH
Confidence 555555555555553
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.37 E-value=1.7e-07 Score=101.96 Aligned_cols=15 Identities=0% Similarity=-0.088 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003672 106 MTEHNKRFKLCIKWF 120 (804)
Q Consensus 106 l~~~l~~l~~~i~~l 120 (804)
++..+..+......+
T Consensus 141 lQ~qlE~~qkE~eeL 155 (546)
T PF07888_consen 141 LQNQLEECQKEKEEL 155 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=4.5e-08 Score=112.13 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 308 NEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKL 387 (804)
Q Consensus 308 ~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l 387 (804)
.++..++.++..+..+......+++-.+.++..+..........++.+...+.............+..+...+..++.++
T Consensus 479 ~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 479 EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444433333444444444444444444
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003672 388 KMADLSSMETRAEFEEKQRVAQELQER 414 (804)
Q Consensus 388 ~~~~~~~~~~~~e~~~l~~~l~~l~~~ 414 (804)
......+..+..+...+...+..+..+
T Consensus 559 ~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 559 KEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444433433333333333333333333
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.33 E-value=2.5e-07 Score=106.49 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=8.0
Q ss_pred EEcCCHHHHHHHHHHH
Q 003672 629 VDVCSISEISSLLRQA 644 (804)
Q Consensus 629 ~~v~s~~e~~~ll~~~ 644 (804)
.++.-++||.-+++..
T Consensus 1012 ~Pfr~LDEFDVFMD~v 1027 (1074)
T KOG0250|consen 1012 CPFRALDEFDVFMDMV 1027 (1074)
T ss_pred CchhhhhHHHHHHHHH
Confidence 3444555555555444
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=9e-08 Score=107.88 Aligned_cols=122 Identities=14% Similarity=0.253 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 242 SLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVR 321 (804)
Q Consensus 242 ~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~ 321 (804)
.++.+.+.++.++...+..+..++..+..+..++..+...+...+.....+...+............++..+-...+...
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~ 898 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCL 898 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333433333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 003672 322 DDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLE 363 (804)
Q Consensus 322 ~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le 363 (804)
.+.....-.+..+..++..+..+......+++.+..+...+.
T Consensus 899 ~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 899 SEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 444444444444444444444444445555555555544444
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.23 E-value=1.8e-07 Score=103.90 Aligned_cols=168 Identities=21% Similarity=0.337 Sum_probs=77.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHH
Q 003672 278 LRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKS---LMELNS 354 (804)
Q Consensus 278 l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l---~~el~~ 354 (804)
++.+...|++.+-.+++-..........+.++++....++..++...+.+..++..++..+..++++++.. +.-.+.
T Consensus 373 lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~q 452 (1243)
T KOG0971|consen 373 LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQ 452 (1243)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 33334444444444444444444444445555555555555555555555555555555555555554431 223333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 003672 355 LTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLS-SMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLH 433 (804)
Q Consensus 355 l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~-~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 433 (804)
|..+.-++++.+..+++.+.+++. ++++.+++...+.+ ...++++++.+.--+.++..+..+..+.+.+....+.+..
T Consensus 453 LtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfR 531 (1243)
T KOG0971|consen 453 LTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFR 531 (1243)
T ss_pred HHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333444444444444433332 12222222222111 2345555555555555555555555554544444444444
Q ss_pred hhhhhhccccccc
Q 003672 434 NTILELKGNIRVF 446 (804)
Q Consensus 434 ~~i~~Lk~~i~~~ 446 (804)
..+..|...+..+
T Consensus 532 elva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 532 ELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 48
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.22 E-value=1.5e-06 Score=95.31 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
|.+-.-.+++.++.++.+++.++.....++.++..|+..+..++.++.+.+.+
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~ete 142 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIE 142 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666667777777666665555555555555555555555444444
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=4.5e-07 Score=114.40 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=4.3
Q ss_pred hhhhccccccc
Q 003672 436 ILELKGNIRVF 446 (804)
Q Consensus 436 i~~Lk~~i~~~ 446 (804)
|.++..-|..+
T Consensus 1139 ~~~~n~~~~~~ 1149 (1311)
T TIGR00606 1139 MEEINKIIRDL 1149 (1311)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=99.20 E-value=1.9e-06 Score=105.72 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIK 118 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~ 118 (804)
++..+..+...+..+...+.
T Consensus 198 l~~~~~~l~~ei~~l~~e~~ 217 (880)
T PRK03918 198 KEKELEEVLREINEISSELP 217 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 51
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.7e-07 Score=106.76 Aligned_cols=250 Identities=15% Similarity=0.196 Sum_probs=121.2
Q ss_pred cccCCCCCCCCcccccccHHHHHHHhccccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003672 63 ASDMASTEGSDCGTIEFTKEEVEALLNEKPK-TKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALEST 141 (804)
Q Consensus 63 ~~~~~~g~~~~~~~~~~~~eev~~ll~e~~~-~~k~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l 141 (804)
+|.||||++. +. |+.++++.|...+.. .....--.. -..+....+.++..++........+++.++..+...
T Consensus 637 sGlmsGG~s~---~~-wdek~~~~L~~~k~rl~eel~ei~~---~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~ 709 (1141)
T KOG0018|consen 637 SGLMSGGSSG---AK-WDEKEVDQLKEKKERLLEELKEIQK---RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQN 709 (1141)
T ss_pred cceecCCccC---CC-cCHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998763 44 999999999855533 111110000 011334444455545444444445555555555555
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 142 EKKLSDTEMEMKN---RESELNGTILDLRQENAHLREKVAKEESEKLDA--------IENHRIEKEARVAAEKLQASLSE 210 (804)
Q Consensus 142 ~~~~~ele~~l~~---~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~--------~~~~~~~~~~~~~~~~~~~~l~~ 210 (804)
+.++...+..+.. ++.++...+...+..+..|+.+..+++...-.- ...|+.... .........+++.
T Consensus 710 ~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~ 788 (1141)
T KOG0018|consen 710 ELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFEN 788 (1141)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHH
Confidence 5555555555222 233444444444444444444444444331110 222333222 2234444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003672 211 QLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLA 290 (804)
Q Consensus 211 el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~ 290 (804)
++..+..+++...+ .+....+...+...+.++.+++.++.+...+...+... .+++. .. +......+.++.
T Consensus 789 q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-----k~-k~~~~~~~~e~~ 859 (1141)
T KOG0018|consen 789 QKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-----KN-KSKFEKKEDEIN 859 (1141)
T ss_pred HHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-----HH-HHHHHHHHHHHH
Confidence 66666555554433 44444555555555555555555554444444444333 22211 00 333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 291 LSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVA 329 (804)
Q Consensus 291 ~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~ 329 (804)
..+.....+..++..+..++..+...+++...++..+..
T Consensus 860 e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 860 EVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554433
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.19 E-value=1.3e-06 Score=100.84 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 156 ESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKR 235 (804)
Q Consensus 156 ~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~ 235 (804)
+..+..++..-..++..+..++..+.....+...-+...+..+...+.....|+.+++.++.+++.....+......+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444455555555555554444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 236 LQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIV 272 (804)
Q Consensus 236 l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~ 272 (804)
+++....+..++..+...++.....+..+...++.+.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433333
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.18 E-value=4.5e-06 Score=94.34 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 200 AAEKLQASLSEQLEKAHQDIAAA 222 (804)
Q Consensus 200 ~~~~~~~~l~~el~~l~~el~~~ 222 (804)
........|..++..++..+...
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554443
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.17 E-value=6.3e-06 Score=95.23 Aligned_cols=8 Identities=25% Similarity=0.758 Sum_probs=5.7
Q ss_pred HHHHHHHh
Q 003672 81 KEEVEALL 88 (804)
Q Consensus 81 ~eev~~ll 88 (804)
++|++.+.
T Consensus 161 k~dl~~vv 168 (1074)
T KOG0250|consen 161 KEDLDTVV 168 (1074)
T ss_pred HHHHHHHH
Confidence 77887764
No 55
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-06 Score=92.05 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003672 312 CLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMA 390 (804)
Q Consensus 312 ~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~ 390 (804)
.+..++..++..+.+.+...+.+...+.+++.+...+......+...+...+..+..+.....+++++++.++..+-.+
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444444444555555555555555555555555555555555555555555666666665555444
No 56
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.16 E-value=3.4e-06 Score=97.30 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003672 383 ANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKL 428 (804)
Q Consensus 383 l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~ 428 (804)
+..............+.+++.+...+..+.....+...++..+...
T Consensus 553 Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 553 LEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444333
No 57
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.3e-06 Score=98.39 Aligned_cols=12 Identities=50% Similarity=0.526 Sum_probs=9.2
Q ss_pred ccHHHHHHHhcc
Q 003672 79 FTKEEVEALLNE 90 (804)
Q Consensus 79 ~~~eev~~ll~e 90 (804)
.++.||-.|+..
T Consensus 116 Vtk~evvnLLES 127 (1200)
T KOG0964|consen 116 VTKGEVVNLLES 127 (1200)
T ss_pred ccHHHHHHHHHh
Confidence 678888888844
No 58
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=99.07 E-value=4.4e-06 Score=94.54 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 354 SLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 354 ~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
.+..+++.+...+......+..+......+++++......+......++.+...+-.++.+...+
T Consensus 485 el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 485 ELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444444444444433333
No 59
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.5e-06 Score=92.04 Aligned_cols=10 Identities=30% Similarity=0.232 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 003672 6 QNRPPRSPSI 15 (804)
Q Consensus 6 ~~~~~~~~~~ 15 (804)
..-||+||++
T Consensus 18 tvv~~fSph~ 27 (1200)
T KOG0964|consen 18 TVVDPFSPHH 27 (1200)
T ss_pred cccCCCCCCc
Confidence 3456777743
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.05 E-value=4.6e-07 Score=91.63 Aligned_cols=6 Identities=17% Similarity=0.673 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003672 173 LREKVA 178 (804)
Q Consensus 173 l~~~l~ 178 (804)
++.+++
T Consensus 6 l~~eld 11 (237)
T PF00261_consen 6 LKDELD 11 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.04 E-value=1.9e-05 Score=98.75 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=7.7
Q ss_pred ceEEEEEEeCCCCC
Q 003672 752 SKTLMFVNISPDSP 765 (804)
Q Consensus 752 s~t~~i~~isp~~~ 765 (804)
++=+.|++.+|+++
T Consensus 1173 ~nnI~li~A~P~~~ 1186 (1201)
T PF12128_consen 1173 SNNISLISAFPNPD 1186 (1201)
T ss_pred hCCceEEEeCCCCC
Confidence 34455556667554
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=8.8e-06 Score=92.37 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=12.6
Q ss_pred cccccccCCCCCCCCcccc
Q 003672 59 DVSAASDMASTEGSDCGTI 77 (804)
Q Consensus 59 ~~~~~~~~~~g~~~~~~~~ 77 (804)
..-|+|.+|||..+.++.+
T Consensus 654 V~dP~GtlTGGs~~~~a~~ 672 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGADL 672 (1174)
T ss_pred eeCCCCcccCCCCCCcccH
Confidence 4558899999876544433
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.01 E-value=3.7e-05 Score=96.22 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=6.4
Q ss_pred ccHHHHHHHhcc
Q 003672 79 FTKEEVEALLNE 90 (804)
Q Consensus 79 ~~~eev~~ll~e 90 (804)
....+|+..+.+
T Consensus 223 ~~~~~i~~W~~~ 234 (1201)
T PF12128_consen 223 LKKNDIDDWLRD 234 (1201)
T ss_pred cchhhHHHHHHH
Confidence 345566665544
No 64
>PRK01156 chromosome segregation protein; Provisional
Probab=99.01 E-value=2.3e-05 Score=96.08 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=13.6
Q ss_pred eEEEEEEeCCCCCChHHhHHHHHHHHHhhccc
Q 003672 753 KTLMFVNISPDSPSVGESLCSLRFAARVNACE 784 (804)
Q Consensus 753 ~t~~i~~isp~~~~~~etl~tL~fa~r~~~~~ 784 (804)
.+++|++-.+ ..+.+|.++-.+.
T Consensus 861 ~~ii~ish~~---------~~~~~~d~ii~~~ 883 (895)
T PRK01156 861 PQVIMISHHR---------ELLSVADVAYEVK 883 (895)
T ss_pred CeEEEEECch---------HHHHhcCeEEEEE
Confidence 4666666554 1235787776665
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.00 E-value=4.3e-05 Score=87.84 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003672 374 RIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLI 423 (804)
Q Consensus 374 ~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~ 423 (804)
..+..++..+..++..-.........+++....++..+..+..++.....
T Consensus 451 ~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~ 500 (569)
T PRK04778 451 FEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENAT 500 (569)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555552222333333666666666666666666554433
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.99 E-value=7.1e-06 Score=89.65 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 342 QESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 342 ~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
.+++..+...+..|..++.+++..-..+.++|..|+-++..-.. ..+..+.....++..++++...+-.++..+
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r---~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR---SFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555555555544433222 122233333444444444444444443333
No 67
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.99 E-value=3.6e-05 Score=94.28 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccc
Q 003672 399 AEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNI 443 (804)
Q Consensus 399 ~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i 443 (804)
.+++.....+..++..+..+...+.......+.+...+.+|...+
T Consensus 447 ~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv 491 (1822)
T KOG4674|consen 447 EELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQV 491 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444444444433
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.93 E-value=0.00013 Score=84.97 Aligned_cols=6 Identities=50% Similarity=0.988 Sum_probs=2.9
Q ss_pred CCCCCC
Q 003672 8 RPPRSP 13 (804)
Q Consensus 8 ~~~~~~ 13 (804)
.||..|
T Consensus 353 ~pP~vP 358 (1317)
T KOG0612|consen 353 VPPVVP 358 (1317)
T ss_pred CCCCCC
Confidence 355545
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.93 E-value=1.8e-05 Score=86.63 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWFQ 121 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l~ 121 (804)
|-.++..|+.+-..|...+.-++
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.92 E-value=1.9e-05 Score=90.22 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003672 302 QKDSLVNEVRCL 313 (804)
Q Consensus 302 ~~~~l~~el~~l 313 (804)
++.+|...++.|
T Consensus 1620 ~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1620 QLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=3.2e-05 Score=85.15 Aligned_cols=152 Identities=14% Similarity=0.258 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 262 KRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKY 341 (804)
Q Consensus 262 ~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l 341 (804)
..++.++..|..++..|..++...+-.+...+..+......++....++..++.++.+.+..+..+.-+.+.+...+...
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 33333444444444444444444444444444555555555555555555555555555555555555555555555444
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003672 342 QESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQE 413 (804)
Q Consensus 342 ~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~ 413 (804)
+............|......-+.-+..++.++.++..+.+.-..+++-.+.++.++++.+....-..++++.
T Consensus 520 q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 520 QSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333344444444444445556666677777777766677777777777777777666666665555
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.91 E-value=7.2e-05 Score=93.26 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003672 358 KSKSLEETCSSQREQIRIMEIQLAAANEKLKMA 390 (804)
Q Consensus 358 ~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~ 390 (804)
.+..+.+......+....++.+++.+..++..+
T Consensus 566 ~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l 598 (1486)
T PRK04863 566 RLESLSESVSEARERRMALRQQLEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444443
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.90 E-value=0.00011 Score=78.28 Aligned_cols=54 Identities=28% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 156 ESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLS 209 (804)
Q Consensus 156 ~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (804)
+..+...+..+..+...+.-++..+..+..++...+.........++.++..+.
T Consensus 56 l~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444444444444444444444444444444333333333333333
No 74
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.89 E-value=0.00027 Score=77.11 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 100 KAKIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 100 k~k~e~l~~~l~~l~~~i~~l 120 (804)
...++.+...|+.|...+...
T Consensus 345 q~eLdK~~~~i~~Ln~~leaR 365 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNALEAR 365 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566665555533
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.86 E-value=0.00015 Score=90.63 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=3.3
Q ss_pred hhhhhcccc
Q 003672 435 TILELKGNI 443 (804)
Q Consensus 435 ~i~~Lk~~i 443 (804)
.+..|...|
T Consensus 653 ~~~~L~~~i 661 (1486)
T PRK04863 653 RKQALDEEI 661 (1486)
T ss_pred HHHHHHHHH
Confidence 333333333
No 76
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=0.00016 Score=83.39 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHhhhhhhhhhhccccccccccc
Q 003672 428 LRKKLHNTILELKGNIRVFCRVR 450 (804)
Q Consensus 428 ~~~~l~~~i~~Lk~~i~~~~r~r 450 (804)
.+..++.-.....+.+-++|.+.
T Consensus 493 ave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 493 AVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHHHhCCCccchhhhccccc
Confidence 34445555666778888888874
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.83 E-value=0.00027 Score=80.89 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKV 177 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l 177 (804)
.+..+..+.+.+..++..+..+......+...-++-+.++..+...+..+...+...--..-..+..++..+..++..+
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444444444444445555555555555555543322223333333334444444333
No 78
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.81 E-value=0.00014 Score=83.70 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 100 KAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKN 154 (804)
Q Consensus 100 k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~ 154 (804)
+..+..+.+.+...+..+..+......+...-++-+.++..++..+.++...+-.
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~ 158 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA 158 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444444444445555555555555555555433
No 79
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.81 E-value=7.3e-10 Score=131.70 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 94 TKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 94 ~~k~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
+.+.+.......+...+.+++..+.........+.....++..++..+...+.+.+..
T Consensus 173 k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~ 230 (859)
T PF01576_consen 173 KAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQ 230 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555544455455555555555555555555544
No 80
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.79 E-value=0.00086 Score=76.67 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWFQQ 122 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l~~ 122 (804)
|..++..++.+++.++..+.....
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~ 55 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQA 55 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00011 Score=80.94 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.9
Q ss_pred eEEEEecCCCcccccCCCCccc
Q 003672 684 VLNLIDLAGSERLSRSGATGDR 705 (804)
Q Consensus 684 ~l~~VDLagse~~~~~~~~~~~ 705 (804)
..-.+|-+|+-...+++..+.+
T Consensus 957 y~r~~~q~gs~Tp~k~g~~~kk 978 (1118)
T KOG1029|consen 957 YVRPKDQEGSGTPPKQGPTPKK 978 (1118)
T ss_pred eeeehhccCCCCCCCCCCCCCC
Confidence 3556788888888777777655
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=0.00062 Score=73.87 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003672 313 LRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNS 354 (804)
Q Consensus 313 l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~ 354 (804)
...++.+...+...++..+..+...+++..+.+..++.++..
T Consensus 430 i~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~ 471 (581)
T KOG0995|consen 430 ISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKK 471 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444333
No 83
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.75 E-value=0.00031 Score=79.95 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=5.7
Q ss_pred eeEEEEecC
Q 003672 683 GVLNLIDLA 691 (804)
Q Consensus 683 ~~l~~VDLa 691 (804)
+.+..|.|+
T Consensus 542 gdl~EvsL~ 550 (617)
T PF15070_consen 542 GDLEEVSLA 550 (617)
T ss_pred ccccccccc
Confidence 456667666
No 84
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.73 E-value=0.00084 Score=76.92 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 97 FDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLR 174 (804)
Q Consensus 97 ~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~ 174 (804)
.+....+..+.+.+..+...+..+...+.....++..++.....+++.+..........+..++..+..++.......
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777776665555544445555555555555444443
No 85
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.71 E-value=2.4e-09 Score=127.26 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhhhcccc
Q 003672 435 TILELKGNI 443 (804)
Q Consensus 435 ~i~~Lk~~i 443 (804)
.|..|...+
T Consensus 526 ~l~~le~~L 534 (859)
T PF01576_consen 526 QLESLEAEL 534 (859)
T ss_dssp ---------
T ss_pred HHHHHHhHH
Confidence 333333333
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.71 E-value=0.0015 Score=74.50 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhc
Q 003672 632 CSISEISSLLRQAAQS 647 (804)
Q Consensus 632 ~s~~e~~~ll~~~~~~ 647 (804)
.|+..+..||......
T Consensus 573 pTAqqImqLL~eiQnp 588 (617)
T PF15070_consen 573 PTAQQIMQLLQEIQNP 588 (617)
T ss_pred chHHHHHHHhHhcCCc
Confidence 4677888888665433
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.3e-05 Score=84.97 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 129 LEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 129 ~e~~~l~~el~~l~~~~~ele~~ 151 (804)
.+++.++....+++.+.++++.+
T Consensus 671 ~~~e~lkQ~~~~l~~e~eeL~~~ 693 (970)
T KOG0946|consen 671 YQIENLKQMEKELQVENEELEEE 693 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.68 E-value=8.1e-05 Score=85.95 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 103 IEQMTEHNKRFKLCIKWFQQVDENHVLEKQ-------KIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLRE 175 (804)
Q Consensus 103 ~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~-------~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~ 175 (804)
+..++.++++|+..+...+..+.++...+. .++.+|..++.+.+.++.+ +..+......-+..+..++.
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~K----l~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNK----LQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 345666666676666666655555544432 2344444444444444444 44444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003672 176 KVAKEESEKLDAIENHRIEK 195 (804)
Q Consensus 176 ~l~~~~~e~~~~~~~~~~~~ 195 (804)
+|......+..+..++.+++
T Consensus 496 rL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444433
No 89
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.64 E-value=0.0023 Score=73.25 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 103 IEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 103 ~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
-..+...|.+++..++..+........+.+.|......+......++.+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~ 77 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELE 77 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555554444444444
No 90
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.61 E-value=2.6e-05 Score=89.93 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccccCC
Q 003672 408 AQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRVRPL 452 (804)
Q Consensus 408 l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r~~ 452 (804)
-.+|..-+-+...+++..+..+.+-+.+|.+|+.+|..+.-|-|-
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345556666666667777777777888999999999999998774
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00016 Score=80.55 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.0
Q ss_pred ccHHHHHHHh
Q 003672 79 FTKEEVEALL 88 (804)
Q Consensus 79 ~~~eev~~ll 88 (804)
+.++++..+.
T Consensus 566 ~~r~~~~~lI 575 (970)
T KOG0946|consen 566 VSRSDVYQLI 575 (970)
T ss_pred ccHHHHHHHH
Confidence 5566666654
No 92
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.60 E-value=0.0054 Score=75.19 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=9.0
Q ss_pred Hhhhhhhhhhhcccccccccc
Q 003672 429 RKKLHNTILELKGNIRVFCRV 449 (804)
Q Consensus 429 ~~~l~~~i~~Lk~~i~~~~r~ 449 (804)
...+..++..+...+..+..+
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~l 748 (908)
T COG0419 728 LEELKKELEKLEKALELLEEL 748 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 93
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.60 E-value=0.001 Score=66.98 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 325 DRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKM 389 (804)
Q Consensus 325 ~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~ 389 (804)
..+...+..+..+...+...+..+-.+.+.++.....+...+......+..+...+..+..++..
T Consensus 175 ~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 175 REIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.59 E-value=7e-05 Score=87.13 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003672 552 RSLEQIF 558 (804)
Q Consensus 552 r~~~~lf 558 (804)
.....++
T Consensus 513 ~~~~~~~ 519 (562)
T PHA02562 513 EGTKALL 519 (562)
T ss_pred hHHHHHH
Confidence 3333333
No 95
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.58 E-value=0.0023 Score=70.11 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003672 370 REQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLA 416 (804)
Q Consensus 370 ~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~ 416 (804)
+.+-..+.+.+.....+....+..+..++.+++.++.++..+.....
T Consensus 710 raE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r 756 (961)
T KOG4673|consen 710 RAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIR 756 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445444444444455555555555555555555444433
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.56 E-value=0.00013 Score=84.77 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.6
Q ss_pred eeeEeecccc
Q 003672 486 KFPFTFDKVF 495 (804)
Q Consensus 486 ~~~~~fd~vf 495 (804)
+..+-||..|
T Consensus 497 ~~~lilDEp~ 506 (562)
T PHA02562 497 TNLLILDEVF 506 (562)
T ss_pred cCeEEEeccc
Confidence 4455566665
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.54 E-value=0.0014 Score=65.43 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 106 MTEHNKRFKLCIKWFQQV----DENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEE 181 (804)
Q Consensus 106 l~~~l~~l~~~i~~l~~~----~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~ 181 (804)
++++|..|+..+..++.. +..+..+++-++...+.++..+.--+..+...+-+...++..+..+..-|..+|+..+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EK 83 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEK 83 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhH
Confidence 455566666665555332 2234455555555555555444433333333344444444444444444444444333
Q ss_pred H
Q 003672 182 S 182 (804)
Q Consensus 182 ~ 182 (804)
.
T Consensus 84 q 84 (305)
T PF14915_consen 84 Q 84 (305)
T ss_pred H
Confidence 3
No 98
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.53 E-value=0.00087 Score=68.48 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=13.9
Q ss_pred CCCeeEEeeccCCCCcceeeccCC
Q 003672 518 GYKVCIFAYGQTGSGKTYTMMGKP 541 (804)
Q Consensus 518 G~n~~v~~yG~t~sGKt~t~~G~~ 541 (804)
-.|.|||+-| .|-+++-.|+.
T Consensus 391 a~nr~vf~~~---e~~at~~~~ps 411 (499)
T COG4372 391 ATNRCVFATG---EGRATPRCGPS 411 (499)
T ss_pred ccceeeeccc---cccccCccCCC
Confidence 4688999744 56666666654
No 99
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.51 E-value=0.0038 Score=68.87 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=7.1
Q ss_pred CCCCccCCCCCch
Q 003672 13 PSIKKEGTDDVPF 25 (804)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (804)
||..-+|.+..|.
T Consensus 28 ~s~~~e~~d~~~~ 40 (786)
T PF05483_consen 28 LSKNGENIDSDPA 40 (786)
T ss_pred cccccccCCccHH
Confidence 4555566654443
No 100
>PRK11637 AmiB activator; Provisional
Probab=98.49 E-value=0.00034 Score=77.89 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.4
Q ss_pred CCceeEEEEEEE
Q 003672 660 SRSHFVFTLRIF 671 (804)
Q Consensus 660 srsH~i~~l~i~ 671 (804)
...|+.|.|+..
T Consensus 405 ~~~~l~fei~~~ 416 (428)
T PRK11637 405 GRPSLYFEIRRQ 416 (428)
T ss_pred CCCeEEEEEEEC
Confidence 345777766653
No 101
>PRK11637 AmiB activator; Provisional
Probab=98.48 E-value=0.0003 Score=78.24 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVA 178 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~ 178 (804)
.+.+++++...++.+...+..++........++..+..+|..+..++..++.+ +..++.++..++.++..++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~----i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNT----LNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444444444444444444444444 44444444444444444444444
Q ss_pred HHH
Q 003672 179 KEE 181 (804)
Q Consensus 179 ~~~ 181 (804)
..+
T Consensus 121 ~~~ 123 (428)
T PRK11637 121 AQE 123 (428)
T ss_pred HHH
Confidence 333
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0075 Score=68.35 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhccccccccc
Q 003672 371 EQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCR 448 (804)
Q Consensus 371 ~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r 448 (804)
.++..+...+.........+...+..++.+++.....+.+++..+.+....+.........++.++..|+..+...-+
T Consensus 545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333444444444444444444444555555555555555555555555555555555566666666655544433
No 103
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0025 Score=68.16 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHHHH
Q 003672 631 VCSISEISSLLRQA 644 (804)
Q Consensus 631 v~s~~e~~~ll~~~ 644 (804)
|...+++..++..+
T Consensus 488 v~~SdeLaqlyh~v 501 (772)
T KOG0999|consen 488 VTFSDELAQLYHHV 501 (772)
T ss_pred hhhhHHHHHHHHHH
Confidence 33444444444444
No 104
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.0087 Score=67.83 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCCCeeEEeeccC
Q 003672 508 ISQLVQSALDGYKVCIFAYGQT 529 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t 529 (804)
|.+.+..=-.-+..|=-+||+.
T Consensus 670 vq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 670 VQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHHHhcCCCCCCCCCCCcc
Confidence 3444444445666666666654
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.39 E-value=0.0057 Score=69.46 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHHhhcc
Q 003672 772 CSLRFAARVNAC 783 (804)
Q Consensus 772 ~tL~fa~r~~~~ 783 (804)
.-|=-|+||++=
T Consensus 881 aQLVaASrVKA~ 892 (980)
T KOG0980|consen 881 AQLVAASRVKAD 892 (980)
T ss_pred HHHHHHHHhhcc
Confidence 334445555443
No 106
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.33 E-value=3.1e-09 Score=120.49 Aligned_cols=269 Identities=31% Similarity=0.346 Sum_probs=177.7
Q ss_pred HhhhhhhhhhhcccccccccccCCCCCCCCCCCcceEecCCCcccCCcceee----ecCCceeeEeeccccCCCCChhHH
Q 003672 429 RKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGIDL----IQNGQKFPFTFDKVFNHEASQQDV 504 (804)
Q Consensus 429 ~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l----~~~~~~~~~~fd~vf~~~~~q~~v 504 (804)
-+.|+..+.... ++.++|+++|......+-. ....|+.........+.. ........|.||.+|........+
T Consensus 294 TRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~--~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 370 (568)
T COG5059 294 TRLLQDSLGGNC-NTRVICTISPSSNSFEETI--NTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILV 370 (568)
T ss_pred HHHHHHhcCCCc-cEEEEEEEcCCCCchHHHH--HHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHH
Confidence 344566666666 9999999999775421101 111111111111111111 113455789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeeEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEEeeeechh
Q 003672 505 FLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASMLEIYNET 584 (804)
Q Consensus 505 f~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~Ei~~e~ 584 (804)
|.....+++..++| +++||++++|++++|.- ...++.+-.+..+|.........+|.+...+-++++|-..
T Consensus 371 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 371 FREQSQLSQSSLSG----IFAYMQSLKKETETLKS-----RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred HHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc-----hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999943 2346666666888988888888889988888888887333
Q ss_pred hhhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcccCCCcee
Q 003672 585 IRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHF 664 (804)
Q Consensus 585 v~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~ 664 (804)
..++......... ........++++. ...++. ......+..... .+...+....+..|..++++|.
T Consensus 442 ~~~~~~e~~~~~~-------~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~ 507 (568)
T COG5059 442 LLLLREEELSKKK-------TKIHKLNKLRHDL-----SSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRSSRSHS 507 (568)
T ss_pred HHHHHHHhcCChH-------HHHHHHHHHHHHH-----HHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhhcccch
Confidence 3333332111000 0000000000000 000110 011111111122 4667788888999999999999
Q ss_pred EEEEEEEeeeccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhc
Q 003672 665 VFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA 727 (804)
Q Consensus 665 i~~l~i~~~~~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~ 727 (804)
+|..+....+......+ ++.|||||+|+. .+...+.++++...+|++|..+++++.++.
T Consensus 508 ~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 508 KFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99988877766555444 899999999999 999999999999999999999999998764
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.30 E-value=0.02 Score=67.51 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=5.5
Q ss_pred chhhhhhcCC
Q 003672 582 NETIRDLLST 591 (804)
Q Consensus 582 ~e~v~DLL~~ 591 (804)
.+.+++.|.|
T Consensus 617 ~~~~~~~l~~ 626 (650)
T TIGR03185 617 DEKHYNLLKP 626 (650)
T ss_pred CHHHHHHHHH
Confidence 3345666654
No 108
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.24 E-value=0.032 Score=67.84 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=19.6
Q ss_pred eEEEEEEeCCCCCChHHhHHHH-HHHHHhhccccCCCcccccccccc
Q 003672 753 KTLMFVNISPDSPSVGESLCSL-RFAARVNACEIGVPSRQLTLKAAD 798 (804)
Q Consensus 753 ~t~~i~~isp~~~~~~etl~tL-~fa~r~~~~~~~~~~~~~~~~~~~ 798 (804)
+..+.+.|+.+. +.+.-...| +.|.....|-..|++.+......+
T Consensus 992 Rv~i~VgV~Y~s-Die~v~~iL~eaa~~~~~VL~~P~P~V~~~~fgd 1037 (1109)
T PRK10929 992 RVVLTIPAPADA-NSEEVTEILLTAARRCSLVLDNPAPEVFLVDLQQ 1037 (1109)
T ss_pred EEEEEEEeCCCC-CHHHHHHHHHHHHHhCccccCCCCCEEEEEecCC
Confidence 444555555543 344444433 344444444444444433333333
No 109
>PRK11281 hypothetical protein; Provisional
Probab=98.24 E-value=0.034 Score=67.92 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=5.1
Q ss_pred cHHHHHHHhcc
Q 003672 80 TKEEVEALLNE 90 (804)
Q Consensus 80 ~~eev~~ll~e 90 (804)
+++++.+-++.
T Consensus 37 ~~~~iq~~l~~ 47 (1113)
T PRK11281 37 TEADVQAQLDA 47 (1113)
T ss_pred CHHHHHHHHHH
Confidence 44455544433
No 110
>PRK11281 hypothetical protein; Provisional
Probab=98.23 E-value=0.0076 Score=73.34 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q 003672 81 KEEVEALLN 89 (804)
Q Consensus 81 ~eev~~ll~ 89 (804)
+...+++..
T Consensus 42 q~~l~~~~~ 50 (1113)
T PRK11281 42 QAQLDALNK 50 (1113)
T ss_pred HHHHHHhhc
Confidence 355555543
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.23 E-value=0.007 Score=64.45 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=5.4
Q ss_pred hhcCCCeeEE
Q 003672 515 ALDGYKVCIF 524 (804)
Q Consensus 515 ~~~G~n~~v~ 524 (804)
.|.||--.|+
T Consensus 347 ~l~GYG~vvI 356 (420)
T COG4942 347 WLRGYGLVVI 356 (420)
T ss_pred hhccCceEEE
Confidence 4566655443
No 112
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.016 Score=63.33 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 159 LNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQD 218 (804)
Q Consensus 159 l~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~e 218 (804)
+...+..++..+..++.-+..++.........+.....++...+.++..++.+...|+..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333344444444444444333
No 113
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.22 E-value=0.012 Score=61.94 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=10.6
Q ss_pred CchhhhhccccCcccCcccCCCCC
Q 003672 23 VPFDKRRRIGAGRTTGATSTGTGR 46 (804)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~ 46 (804)
.|-+-|.+|.|+ |-|++.+.-+
T Consensus 51 ~P~g~~s~V~tp--t~g~~lApn~ 72 (622)
T COG5185 51 SPTGTRSTVATP--TNGTALAPND 72 (622)
T ss_pred CCCccccccccC--CCCcccCCCC
Confidence 355566666333 2344444444
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.19 E-value=0.0057 Score=69.57 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=10.1
Q ss_pred Hhhhhhhhhhhcccccc
Q 003672 429 RKKLHNTILELKGNIRV 445 (804)
Q Consensus 429 ~~~l~~~i~~Lk~~i~~ 445 (804)
-..+..+|.+|..+|..
T Consensus 573 tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 573 TGTISREIRDLEEQIDT 589 (594)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34456666677666653
No 115
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.19 E-value=0.026 Score=64.42 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 003672 509 SQLVQSAL 516 (804)
Q Consensus 509 ~~~v~~~~ 516 (804)
+.++...+
T Consensus 662 s~~~~~~~ 669 (980)
T KOG0980|consen 662 SHLISTTI 669 (980)
T ss_pred HHHHHHHH
Confidence 34444444
No 116
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.18 E-value=0.041 Score=66.38 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHH-------HHHH-HHHHhh---cCCCeeEE
Q 003672 456 DGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFL-------EISQ-LVQSAL---DGYKVCIF 524 (804)
Q Consensus 456 e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~-------~~~~-~v~~~~---~G~n~~v~ 524 (804)
..-|.+-..|.+-.+..+ .....++|.+--|+--+.+--+.-. .++. +|--++ -|.||.|+
T Consensus 1140 tYrG~Did~IrIrsD~~~--------s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsliIRLALAEtf~snCgvL 1211 (1294)
T KOG0962|consen 1140 TYRGTDIDYIKIRSDSVS--------SSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIRLALAETFGSNCGVL 1211 (1294)
T ss_pred ccCCCCcceEEEeecccc--------ccccccccceeEEEEechHHHHhccCccchHHHHHHHHHHHHHHHHHhhccccc
Confidence 334455555555444222 1223467777778766544333221 1111 222222 48899998
Q ss_pred eecc
Q 003672 525 AYGQ 528 (804)
Q Consensus 525 ~yG~ 528 (804)
|.-.
T Consensus 1212 ALDE 1215 (1294)
T KOG0962|consen 1212 ALDE 1215 (1294)
T ss_pred cccC
Confidence 8653
No 117
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.14 E-value=0.025 Score=62.44 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 248 AKLQSDLETANEVNKRVEKEKLTIVENLSTLRGH----NNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQ 319 (804)
Q Consensus 248 ~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~----~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~ 319 (804)
..++.++..++..+..++..+.....++..++.. ......++.-+...+...+..+..++.+++.++.++..
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444433333333333333322 23333334444444444444444444444444444433
No 118
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.026 Score=60.71 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 199 VAAEKLQASLSEQLEKAHQDIAAANQRA 226 (804)
Q Consensus 199 ~~~~~~~~~l~~el~~l~~el~~~~~~~ 226 (804)
.+++.++.++...+...+.+.+.+....
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl~~~~ 137 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERLEKVH 137 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 119
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.08 E-value=0.016 Score=58.09 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 128 VLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 128 ~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
..+|..|+-+|+.++.+-.+-+..
T Consensus 5 q~eia~LrlEidtik~q~qekE~k 28 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKEKK 28 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345555666666555554444444
No 120
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.07 E-value=0.068 Score=65.11 Aligned_cols=77 Identities=8% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCCCCCCcCCCcccccccccCCCCceEE-EEEEeCCCCCChHHhHHHHHH----HHHhhccccCCCcc
Q 003672 716 LSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTL-MFVNISPDSPSVGESLCSLRF----AARVNACEIGVPSR 790 (804)
Q Consensus 716 l~~L~~vi~~l~~~~~~vp~r~s~LT~lL~~~l~g~s~t~-~i~~isp~~~~~~etl~tL~f----a~r~~~~~~~~~~~ 790 (804)
+.....++...+.....|- +.+-..++-..||.++-.+ +-+.|. +..++..+.+-|.+ +-+-.+|++--|.+
T Consensus 1005 ie~v~~iL~eaa~~~~~VL--~~P~P~V~~~~fgdssi~~elr~wv~-~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~ 1081 (1109)
T PRK10929 1005 SEEVTEILLTAARRCSLVL--DNPAPEVFLVDLQQGIQIFELRIYAA-EMGHRMPLRHEIHQLILAGFREHGIDMPFPPF 1081 (1109)
T ss_pred HHHHHHHHHHHHHhCcccc--CCCCCEEEEEecCCCceEEEEEEEEc-ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCe
Confidence 3444455544444333321 1122234444566544332 334443 33455555555543 33456777777766
Q ss_pred ccccc
Q 003672 791 QLTLK 795 (804)
Q Consensus 791 ~~~~~ 795 (804)
.+.++
T Consensus 1082 ~v~i~ 1086 (1109)
T PRK10929 1082 QMRLE 1086 (1109)
T ss_pred EEEee
Confidence 66544
No 121
>PRK09039 hypothetical protein; Validated
Probab=97.91 E-value=0.0034 Score=66.97 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=3.1
Q ss_pred EEeeccCC
Q 003672 523 IFAYGQTG 530 (804)
Q Consensus 523 v~~yG~t~ 530 (804)
|..-|.|.
T Consensus 265 I~I~GHTD 272 (343)
T PRK09039 265 LRVDGHTD 272 (343)
T ss_pred EEEEEecC
Confidence 33334443
No 122
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.059 Score=58.43 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccc
Q 003672 368 SQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFC 447 (804)
Q Consensus 368 ~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~ 447 (804)
....++.++...+..+...+..-...++.++..++.+...+.............+..+++.-......+..++..+...-
T Consensus 351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eik 430 (570)
T COG4477 351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666555555555554444444444444445555544444
Q ss_pred c
Q 003672 448 R 448 (804)
Q Consensus 448 r 448 (804)
|
T Consensus 431 R 431 (570)
T COG4477 431 R 431 (570)
T ss_pred H
Confidence 3
No 123
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.063 Score=58.24 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=10.6
Q ss_pred CCCCCccceeccCc
Q 003672 44 TGRPRQAFAVVNNR 57 (804)
Q Consensus 44 ~g~~~~~~~~~~~~ 57 (804)
+|-+...|..||+.
T Consensus 58 ~GQTe~~Fe~Wrq~ 71 (570)
T COG4477 58 TGQTETKFEEWRQK 71 (570)
T ss_pred cCccHHHHHHHHHH
Confidence 46677888888884
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.87 E-value=0.074 Score=58.81 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.7
Q ss_pred ccHHHHHHHhc
Q 003672 79 FTKEEVEALLN 89 (804)
Q Consensus 79 ~~~eev~~ll~ 89 (804)
|...+++.|..
T Consensus 12 Wk~~dle~LQr 22 (629)
T KOG0963|consen 12 WKRFDLERLQR 22 (629)
T ss_pred HHhccHHHHHH
Confidence 55555555543
No 125
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.84 E-value=3.6e-06 Score=99.52 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHhccccC--cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003672 81 KEEVEALLNEKPK--TKKFDLKAKIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 81 ~eev~~ll~e~~~--~~k~~~k~k~e~l~~~l~~l~~~i~~l 120 (804)
+..++.|..+..+ ....+++.+++.+...+.+++.....+
T Consensus 245 ~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL 286 (713)
T PF05622_consen 245 RAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEEL 286 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 334445555555555555555555444
No 126
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.80 E-value=0.22 Score=61.98 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.7
Q ss_pred CchHHHHHHHHH
Q 003672 548 GLIPRSLEQIFQ 559 (804)
Q Consensus 548 Gli~r~~~~lf~ 559 (804)
||=|..+..++.
T Consensus 987 ~lD~~~~~~~~~ 998 (1047)
T PRK10246 987 TLDSETLDTALD 998 (1047)
T ss_pred cCCHHHHHHHHH
Confidence 333334444333
No 127
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.78 E-value=0.076 Score=56.20 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 003672 81 KEEVEAL 87 (804)
Q Consensus 81 ~eev~~l 87 (804)
++||-..
T Consensus 161 E~eV~~~ 167 (622)
T COG5185 161 ENEVYQI 167 (622)
T ss_pred HHHHHHH
Confidence 3444444
No 128
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.76 E-value=0.21 Score=60.57 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=5.4
Q ss_pred ccccccccccC
Q 003672 441 GNIRVFCRVRP 451 (804)
Q Consensus 441 ~~i~~~~r~r~ 451 (804)
|.=-.++|||-
T Consensus 1143 G~Did~IrIrs 1153 (1294)
T KOG0962|consen 1143 GTDIDYIKIRS 1153 (1294)
T ss_pred CCCcceEEEee
Confidence 33335555554
No 129
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.74 E-value=8.2e-06 Score=96.79 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=10.4
Q ss_pred hhHHHHHHHhhhhhhhhhhccccc
Q 003672 421 QLIEGEKLRKKLHNTILELKGNIR 444 (804)
Q Consensus 421 ~l~~~~~~~~~l~~~i~~Lk~~i~ 444 (804)
.+..++.....+..++..|...|.
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 130
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.72 E-value=0.066 Score=57.10 Aligned_cols=22 Identities=9% Similarity=0.210 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 130 EKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 130 e~~~l~~el~~l~~~~~ele~~ 151 (804)
-...|...|.+.+.-+.+++.+
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~ 97 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEE 97 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.70 E-value=0.055 Score=52.41 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 003672 167 RQENAHLREK 176 (804)
Q Consensus 167 ~~~~~~l~~~ 176 (804)
+.++..++..
T Consensus 18 ~n~l~elq~~ 27 (194)
T PF15619_consen 18 QNELAELQRK 27 (194)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 132
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.65 E-value=0.13 Score=65.43 Aligned_cols=13 Identities=23% Similarity=0.094 Sum_probs=8.4
Q ss_pred CCceeEEEEEEEe
Q 003672 660 SRSHFVFTLRIFG 672 (804)
Q Consensus 660 srsH~i~~l~i~~ 672 (804)
-|.|+-|.+.+..
T Consensus 1220 yR~w~~F~~~~~~ 1232 (1353)
T TIGR02680 1220 YRRWHRFTVYYER 1232 (1353)
T ss_pred hhhheEEEEEEEe
Confidence 4667777775554
No 133
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.64 E-value=0.18 Score=56.61 Aligned_cols=99 Identities=29% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQVQTLTAEI-VKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLK 388 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~~~l~~el-~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~ 388 (804)
...+..++..++.+++.+..++.-.-.-| .+.....+....++..+......++..+....+.+..+..++..+...+.
T Consensus 473 ~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lq 552 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQ 552 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34566777777777777766665322222 11122334455566666666677777777777777777766666666666
Q ss_pred HhhhhhHHHHHHHHHHHHHH
Q 003672 389 MADLSSMETRAEFEEKQRVA 408 (804)
Q Consensus 389 ~~~~~~~~~~~e~~~l~~~l 408 (804)
........++.++...+..+
T Consensus 553 es~eea~~lR~EL~~QQ~~y 572 (739)
T PF07111_consen 553 ESTEEAAELRRELTQQQEVY 572 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65555555555554444333
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.63 E-value=0.14 Score=54.72 Aligned_cols=21 Identities=0% Similarity=-0.095 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 101 AKIEQMTEHNKRFKLCIKWFQ 121 (804)
Q Consensus 101 ~k~e~l~~~l~~l~~~i~~l~ 121 (804)
--+.++..+|.+-+..++.++
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556665555555544
No 135
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.62 E-value=1.2e-05 Score=95.36 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=2.4
Q ss_pred ccccccCCC
Q 003672 742 YLLQPCLGR 750 (804)
Q Consensus 742 ~lL~~~l~g 750 (804)
+|+.+.=+|
T Consensus 669 ~l~f~~~~~ 677 (722)
T PF05557_consen 669 YLIFDLESG 677 (722)
T ss_dssp -EEEEEE--
T ss_pred eEEEeecCC
Confidence 344433333
No 136
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.59 E-value=0.13 Score=53.38 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 297 DEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIV 339 (804)
Q Consensus 297 ~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~ 339 (804)
..+..+...++.++..+-.+.+++..+++.++.....|..++.
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555544
No 137
>PF13514 AAA_27: AAA domain
Probab=97.58 E-value=0.47 Score=59.79 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=10.5
Q ss_pred CCChhHHHHHHH-HHHHHh
Q 003672 498 EASQQDVFLEIS-QLVQSA 515 (804)
Q Consensus 498 ~~~q~~vf~~~~-~~v~~~ 515 (804)
.-+.+.+|-.+. .++..+
T Consensus 1028 ~GT~dQLYLALRLA~~e~~ 1046 (1111)
T PF13514_consen 1028 RGTRDQLYLALRLALAELL 1046 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455666776654 355554
No 138
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.56 E-value=0.14 Score=53.05 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003672 401 FEEKQRVAQELQE 413 (804)
Q Consensus 401 ~~~l~~~l~~l~~ 413 (804)
+..+..+...+..
T Consensus 222 l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 222 LEDLEKKKQELSE 234 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 139
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.54 E-value=0.23 Score=63.30 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHh
Q 003672 501 QQDVFLEISQLVQSA 515 (804)
Q Consensus 501 q~~vf~~~~~~v~~~ 515 (804)
.+.+|.-+...|..+
T Consensus 1187 ~~~~~~~~~~~i~~~ 1201 (1353)
T TIGR02680 1187 REAVGEFLQQRIERA 1201 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444665565555554
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.53 E-value=0.14 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 173 LREKVAKEESEKLDAIENHRIEKEA 197 (804)
Q Consensus 173 l~~~l~~~~~e~~~~~~~~~~~~~~ 197 (804)
|-.+|..++.++..+...++...+-
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555443
No 141
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.51 E-value=0.3 Score=55.60 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 99 LKAKIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 99 ~k~k~e~l~~~l~~l~~~i~~l 120 (804)
++-++..+..++..++..+..+
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666655
No 142
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.49 E-value=0.094 Score=54.34 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003672 399 AEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 399 ~e~~~l~~~l~~l~~~~~~l 418 (804)
.+-.-+++++..++.+..-+
T Consensus 196 ~ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELL 215 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 143
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.47 E-value=0.19 Score=52.66 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 130 EKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 130 e~~~l~~el~~l~~~~~ele~~ 151 (804)
--.+|+..|.+-+.-+.+++.+
T Consensus 71 sC~EL~~~I~egr~~~~~~E~e 92 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEE 92 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655
No 144
>PF13514 AAA_27: AAA domain
Probab=97.45 E-value=0.69 Score=58.32 Aligned_cols=12 Identities=42% Similarity=1.137 Sum_probs=6.0
Q ss_pred CceeeEeecccc
Q 003672 484 GQKFPFTFDKVF 495 (804)
Q Consensus 484 ~~~~~~~fd~vf 495 (804)
+.+.+|-+|.+|
T Consensus 1050 ~~~lP~IlDD~f 1061 (1111)
T PF13514_consen 1050 GEPLPFILDDIF 1061 (1111)
T ss_pred CCCCcEEeeCCc
Confidence 344455555555
No 145
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.43 E-value=0.21 Score=52.11 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=13.2
Q ss_pred CcccCCCCCCCccceeccC
Q 003672 38 GATSTGTGRPRQAFAVVNN 56 (804)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~ 56 (804)
||...+.|+|..++|+-..
T Consensus 13 ~~~~~as~~meSscss~ss 31 (552)
T KOG2129|consen 13 ALHIDASGRMESSCSSHSS 31 (552)
T ss_pred cccccccccccCCcccccC
Confidence 5556677899888776544
No 146
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.48 Score=55.51 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=7.6
Q ss_pred eeeEeeccccCC
Q 003672 486 KFPFTFDKVFNH 497 (804)
Q Consensus 486 ~~~~~fd~vf~~ 497 (804)
-..|.||++|..
T Consensus 527 l~~lGF~gyls~ 538 (1072)
T KOG0979|consen 527 LKRLGFEGYLSN 538 (1072)
T ss_pred HHhcChHHHhhh
Confidence 346777777643
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.35 E-value=0.23 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 173 LREKVAKEESEKLDAIENHRIE 194 (804)
Q Consensus 173 l~~~l~~~~~e~~~~~~~~~~~ 194 (804)
|..++.++..++.++...++..
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~E 132 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQE 132 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444433
No 148
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.27 E-value=0.67 Score=54.44 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 003672 308 NEVRCLRGELQQVR 321 (804)
Q Consensus 308 ~el~~l~~el~~~~ 321 (804)
+.+..|+.+..+++
T Consensus 190 kkiakLEaEC~rLr 203 (769)
T PF05911_consen 190 KKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 149
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.38 Score=51.01 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=4.5
Q ss_pred hhhhhcc
Q 003672 25 FDKRRRI 31 (804)
Q Consensus 25 ~~~~~~~ 31 (804)
+..|||+
T Consensus 60 m~~Rfrl 66 (521)
T KOG1937|consen 60 MTTRFRL 66 (521)
T ss_pred HHHHHHH
Confidence 3567777
No 150
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.47 Score=51.56 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=6.0
Q ss_pred CCCCCCCCCCC
Q 003672 3 SRNQNRPPRSP 13 (804)
Q Consensus 3 ~~~~~~~~~~~ 13 (804)
.|++.+||.+|
T Consensus 9 ~r~P~sp~~gh 19 (654)
T KOG4809|consen 9 LRLPESPSFGH 19 (654)
T ss_pred ccccCCCCCCc
Confidence 35666666544
No 151
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.20 E-value=1.1 Score=55.78 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHhhhhhhhhhhcccccccccc
Q 003672 394 SMETRAEFEEKQRVAQELQERLAEAEHQLIEGEK---LRKKLHNTILELKGNIRVFCRV 449 (804)
Q Consensus 394 ~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~---~~~~l~~~i~~Lk~~i~~~~r~ 449 (804)
...+...+..+...+..+...+..+...+..... ....+...+..+......+..+
T Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 882 (1047)
T PRK10246 824 VEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWGYL 882 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444433333222 3333444455555444444444
No 152
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.17 E-value=0.42 Score=50.20 Aligned_cols=21 Identities=5% Similarity=-0.095 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 101 AKIEQMTEHNKRFKLCIKWFQ 121 (804)
Q Consensus 101 ~k~e~l~~~l~~l~~~i~~l~ 121 (804)
--+.++..+|.+-+..++.++
T Consensus 70 ~sC~EL~~~I~egr~~~~~~E 90 (312)
T smart00787 70 FSCKELKKYISEGRDLFKEIE 90 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555555544
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.17 E-value=0.3 Score=59.01 Aligned_cols=33 Identities=15% Similarity=-0.048 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhc--CCCeeEEeeccCCCCcceee
Q 003672 505 FLEISQLVQSALD--GYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 505 f~~~~~~v~~~~~--G~n~~v~~yG~t~sGKt~t~ 537 (804)
|..+.-.|..... +.++..|+-+..|.|||++-
T Consensus 530 ~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a 564 (754)
T TIGR01005 530 LRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIE 564 (754)
T ss_pred HHHHHHHHhhhccCCCceEEEeecCCCCCChhHHH
Confidence 3333334444444 34556666678889998875
No 154
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.09 E-value=0.89 Score=52.68 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=15.0
Q ss_pred eeeEeeccccCCCCChhHHHHHHHHHHHHhhcC
Q 003672 486 KFPFTFDKVFNHEASQQDVFLEISQLVQSALDG 518 (804)
Q Consensus 486 ~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G 518 (804)
+..+-||.++..=+... -..+..++..+..|
T Consensus 463 ~~~lilDEp~~gld~~~--~~~~~~~l~~l~~~ 493 (563)
T TIGR00634 463 VTTLIFDEVDVGVSGET--AQAIAKKLAQLSER 493 (563)
T ss_pred CCEEEEECCCCCCCHHH--HHHHHHHHHHHhcC
Confidence 46777787764432221 11244455554444
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.97 E-value=0.21 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 003672 263 RVEKEKLTIVENLSTLRGHNNSLQE 287 (804)
Q Consensus 263 ~le~e~~~l~~~l~~l~~~~~~l~~ 287 (804)
.++.++..+...+.+|..+..-|..
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333333
No 156
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.96 E-value=0.076 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=10.3
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhc
Q 003672 417 EAEHQLIEGEKLRKKLHNTILELK 440 (804)
Q Consensus 417 ~l~~~l~~~~~~~~~l~~~i~~Lk 440 (804)
++..++......++.|+.++..|.
T Consensus 166 ~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 166 ELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 333333333334444555444444
No 157
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.90 E-value=0.12 Score=57.59 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 346 GKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAA 383 (804)
Q Consensus 346 ~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l 383 (804)
+.+..+++.+..++.++....+.+...++.|..++..+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33334444444444443333333333333333333333
No 158
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.90 E-value=1.6 Score=52.17 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003672 102 KIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 102 k~e~l~~~l~~l~~~i~~l 120 (804)
-+..+..+|.+|+..+...
T Consensus 405 llKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444433
No 159
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=1.4 Score=51.03 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=31.6
Q ss_pred cCCceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeecc
Q 003672 482 QNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQ 528 (804)
Q Consensus 482 ~~~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~ 528 (804)
+...+-+|.||.+|.+=++ .=...+..++.+...|+-+..|+|-+
T Consensus 923 ~~~~~LP~i~DD~fVhFD~--~R~~r~~e~l~dls~~~QviYFTCHe 967 (984)
T COG4717 923 RTREPLPFIADDIFVHFDD--ERAKRMLELLADLSEGNQVIYFTCHE 967 (984)
T ss_pred ccCCCCCeeeccchhccCH--HHHHHHHHHHHHhccCCeEEEEEech
Confidence 4567778999999954221 12233556888888899999998775
No 160
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.87 E-value=0.47 Score=45.76 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 244 QLYNAKLQSDLETANEVNKRVE 265 (804)
Q Consensus 244 ~~~~~~l~~~l~~~~~~l~~le 265 (804)
+.++..+...+++-..++..+.
T Consensus 48 kien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334343333333333333
No 161
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.97 Score=49.23 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 200 AAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQ 251 (804)
Q Consensus 200 ~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 251 (804)
..+.+...|.+.+..++.++......+..+++....+.......+.++..+.
T Consensus 335 ~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~le 386 (654)
T KOG4809|consen 335 SFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLE 386 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 3344444444444444444444444444444433333333333333333333
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.86 E-value=0.27 Score=56.16 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 203 KLQASLSEQLEKAHQDIAAANQRAVSL 229 (804)
Q Consensus 203 ~~~~~l~~el~~l~~el~~~~~~~~~l 229 (804)
....-++.++..++.++...+.++...
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444
No 163
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.84 E-value=0.47 Score=46.20 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 394 SMETRAEFEEKQRVAQELQERLAE 417 (804)
Q Consensus 394 ~~~~~~e~~~l~~~l~~l~~~~~~ 417 (804)
+......++...++...|+.++.+
T Consensus 135 leDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333334444444444444444433
No 164
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.84 E-value=0.36 Score=53.96 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 400 EFEEKQRVAQELQERLAEAEH 420 (804)
Q Consensus 400 e~~~l~~~l~~l~~~~~~l~~ 420 (804)
++......+..+...+..+..
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=1.6 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=12.4
Q ss_pred EEEEEEeCCCCCChHHhHHHHHHH
Q 003672 754 TLMFVNISPDSPSVGESLCSLRFA 777 (804)
Q Consensus 754 t~~i~~isp~~~~~~etl~tL~fa 777 (804)
.+++++-+|.-.+-.+|-..-.|-
T Consensus 1038 ~Il~v~ng~~~~~p~~~~~~~~f~ 1061 (1072)
T KOG0979|consen 1038 KILCVMNGPWIAEPSHTWTSAKFD 1061 (1072)
T ss_pred eEEEEecCCcCCCCccCchHHHHH
Confidence 444455555555555555555555
No 166
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.78 E-value=0.33 Score=54.25 Aligned_cols=13 Identities=15% Similarity=-0.220 Sum_probs=7.2
Q ss_pred HHhhcCCCeeEEe
Q 003672 513 QSALDGYKVCIFA 525 (804)
Q Consensus 513 ~~~~~G~n~~v~~ 525 (804)
..+-.|..+.|..
T Consensus 322 ~~i~~G~~v~v~~ 334 (423)
T TIGR01843 322 GFVHVGQPAEIKF 334 (423)
T ss_pred hhhCCCCceEEEE
Confidence 3334677776643
No 167
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.78 E-value=0.29 Score=56.00 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 391 DLSSMETRAEFEEKQRVAQELQERLAEAE 419 (804)
Q Consensus 391 ~~~~~~~~~e~~~l~~~l~~l~~~~~~l~ 419 (804)
...+..++.+++..+..+..+..++.+..
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665544
No 168
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.77 E-value=1.1 Score=50.44 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 003672 552 RSLEQIF 558 (804)
Q Consensus 552 r~~~~lf 558 (804)
.++..+|
T Consensus 524 ssi~r~f 530 (916)
T KOG0249|consen 524 SSIGRLF 530 (916)
T ss_pred hHHHHHH
Confidence 3344444
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.70 E-value=0.28 Score=48.49 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003672 130 EKQKIQSALESTEKK 144 (804)
Q Consensus 130 e~~~l~~el~~l~~~ 144 (804)
.|..|..+++.+.++
T Consensus 19 KIqelE~QldkLkKE 33 (307)
T PF10481_consen 19 KIQELEQQLDKLKKE 33 (307)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 170
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.69 E-value=0.86 Score=46.13 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 320 VRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAA 382 (804)
Q Consensus 320 ~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~ 382 (804)
+..++.........++.-+....+-......+++.+...+..++.+.-.++...+.....+-.
T Consensus 220 lK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~ 282 (391)
T KOG1850|consen 220 LKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQ 282 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333333444444444444444444455555555555555555555555555555444444433
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.68 E-value=0.39 Score=55.58 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=10.3
Q ss_pred CCchHHHHHHHHHhhhh
Q 003672 547 KGLIPRSLEQIFQTSQF 563 (804)
Q Consensus 547 ~Gli~r~~~~lf~~~~~ 563 (804)
.|+=+.....+...+..
T Consensus 473 ~gld~~~~~~~~~~l~~ 489 (563)
T TIGR00634 473 VGVSGETAQAIAKKLAQ 489 (563)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46666666666655543
No 172
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.67 E-value=0.67 Score=44.59 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 003672 406 RVAQELQERLAEAE 419 (804)
Q Consensus 406 ~~l~~l~~~~~~l~ 419 (804)
..|-.++.+...++
T Consensus 184 ~nYvqMy~rn~~LE 197 (202)
T PF06818_consen 184 QNYVQMYQRNQALE 197 (202)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 173
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.63 E-value=0.25 Score=59.65 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=14.0
Q ss_pred eCCCCCChHHhHHHHHHHHHhh
Q 003672 760 ISPDSPSVGESLCSLRFAARVN 781 (804)
Q Consensus 760 isp~~~~~~etl~tL~fa~r~~ 781 (804)
+.++.........+++....++
T Consensus 686 ~~~~~~~~~~~~~~~~~l~~~~ 707 (754)
T TIGR01005 686 TAYDRVVVECGRADAQGISRLN 707 (754)
T ss_pred EEeCceeHHHHHHHHHHHHhcC
Confidence 4566666777767666666544
No 174
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.59 E-value=0.81 Score=44.61 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 96 KFDLKAKIEQMTEHNKRFKLCIKWFQ 121 (804)
Q Consensus 96 k~~~k~k~e~l~~~l~~l~~~i~~l~ 121 (804)
..+|+....++.+++.+++.--++++
T Consensus 22 ~~~ykq~f~~~reEl~EFQegSrE~E 47 (333)
T KOG1853|consen 22 HHEYKQHFLQMREELNEFQEGSREIE 47 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44567777777777777766555443
No 175
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.53 E-value=1.1 Score=45.42 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccc
Q 003672 407 VAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRV 445 (804)
Q Consensus 407 ~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~ 445 (804)
.+..++..+..++.-...++..+..+...+..+..++..
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 333333444444433344444445555555555555544
No 176
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.36 E-value=0.74 Score=50.82 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.7
Q ss_pred chHHHHHHHHHhhh
Q 003672 549 LIPRSLEQIFQTSQ 562 (804)
Q Consensus 549 li~r~~~~lf~~~~ 562 (804)
=-++-+..||..+.
T Consensus 487 r~~rglrnifgKlr 500 (861)
T KOG1899|consen 487 RTRRGLRNIFGKLR 500 (861)
T ss_pred cchhHHHHHHHHhh
Confidence 35677888886654
No 177
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.33 E-value=2.7 Score=47.71 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003672 140 STEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKL-QASLSEQLEKAHQD 218 (804)
Q Consensus 140 ~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~l~~el~~l~~e 218 (804)
-.+.++-.+.-+|+.+.-+....+..+..++..|+.++.....+..-+...+.+...++ +++.. ...|+.++......
T Consensus 310 ~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AEl-evERv~sktLQ~ELsrAqea 388 (739)
T PF07111_consen 310 RWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAEL-EVERVGSKTLQAELSRAQEA 388 (739)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444445555666777777777777777766666555555553332222 22222 22355555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 219 IAAANQRAVSLDDMYKRLQEYNQSLQL 245 (804)
Q Consensus 219 l~~~~~~~~~l~~~~~~l~~~~~~l~~ 245 (804)
...+..+....+..++.+.+.....+.
T Consensus 389 ~~~lqqq~~~aee~Lk~v~eav~S~q~ 415 (739)
T PF07111_consen 389 RRRLQQQTASAEEQLKLVSEAVSSSQQ 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544443
No 178
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.30 E-value=2.9 Score=47.73 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 003672 131 KQKIQSALEST 141 (804)
Q Consensus 131 ~~~l~~el~~l 141 (804)
+..++.+++.+
T Consensus 125 l~~l~~~l~~l 135 (511)
T PF09787_consen 125 LRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 179
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.28 E-value=0.93 Score=50.09 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 201 AEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYN 240 (804)
Q Consensus 201 ~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~ 240 (804)
+++.+..|+...+.+.-++.-+..++....+.+..++--+
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~ci 148 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCI 148 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444444444444444444444444444444333333
No 180
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.28 E-value=2 Score=45.71 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=8.9
Q ss_pred cccee---ccCcccccccccCCC
Q 003672 49 QAFAV---VNNRQDVSAASDMAS 68 (804)
Q Consensus 49 ~~~~~---~~~~~~~~~~~~~~~ 68 (804)
.+|+. -|+..|.++++.-+|
T Consensus 108 nsf~Seaa~n~~Pd~t~t~~~s~ 130 (554)
T KOG4677|consen 108 NSFSSEAAYNQLPDPTSTYSLSS 130 (554)
T ss_pred hccccHhhhccCCCCCCCccccc
Confidence 45554 455444444444333
No 181
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.25 E-value=1.3 Score=43.40 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 128 VLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKV 177 (804)
Q Consensus 128 ~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l 177 (804)
..-|..|+.++..++......+.. +.++..+...+..-+..+..+.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~----m~ei~~eN~~L~epL~~a~~e~ 71 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKL----MAEISQENKRLSEPLKKAEEEV 71 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHH
Confidence 344555666666655555544444 4343333333333333333333
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.11 E-value=1 Score=53.06 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003672 403 EKQRVAQELQERLAEA 418 (804)
Q Consensus 403 ~l~~~l~~l~~~~~~l 418 (804)
.+++-+.+....+.++
T Consensus 689 ~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 689 TIKEILKQQGEEIDEL 704 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 183
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=4.1 Score=47.42 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 359 SKSLEETCSSQREQIRIMEIQLAAANEKLKMAD--LSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 359 ~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~--~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
...+++.++.+.+++.++..++..+..++..++ .....++.+...++..+.+.......+
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl 837 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASL 837 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555543 234445555555555555444443333
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.01 E-value=0.098 Score=51.24 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 003672 362 LEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQR 406 (804)
Q Consensus 362 le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~ 406 (804)
++..+......+..++.++..+.-++..++.++..++.+-..+-+
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444433333333333333333333333
No 185
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.94 E-value=4.3 Score=46.55 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=26.0
Q ss_pred eeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHh
Q 003672 683 GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFAL 726 (804)
Q Consensus 683 ~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l 726 (804)
|.+++=++.+...++-+.....+.+.-+.....|.+|-.=|..|
T Consensus 807 Sf~~~d~~s~~s~wS~ss~stfts~de~~f~~glaalda~iarl 850 (861)
T PF15254_consen 807 SFSNSDLMSGKSDWSISSFSTFTSRDEQDFRNGLAALDANIARL 850 (861)
T ss_pred cccccchhccccccccccccccccccHHHHHhhHHHhhhhHHHH
Confidence 44555555555555555444444556666777788776666554
No 186
>PLN02939 transferase, transferring glycosyl groups
Probab=95.93 E-value=5.7 Score=47.84 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 129 LEKQKIQSALESTEKKLSDTEM 150 (804)
Q Consensus 129 ~e~~~l~~el~~l~~~~~ele~ 150 (804)
.+.+.|+.++.-++-++.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (977)
T PLN02939 163 TEKEALQGKINILEMRLSETDA 184 (977)
T ss_pred HHHHHHHhhHHHHHHHhhhhhh
Confidence 4444455555555444444333
No 187
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.92 E-value=2.9 Score=47.07 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=9.7
Q ss_pred HHHHhhcCCCeeEEeec
Q 003672 511 LVQSALDGYKVCIFAYG 527 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG 527 (804)
-+..+-.|..+.|...+
T Consensus 368 di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 368 DISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHhhcCCCCeEEEEEec
Confidence 34445567777665443
No 188
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.91 E-value=1.8 Score=41.77 Aligned_cols=17 Identities=53% Similarity=0.632 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003672 306 LVNEVRCLRGELQQVRD 322 (804)
Q Consensus 306 l~~el~~l~~el~~~~~ 322 (804)
+..+++.++.+|...+.
T Consensus 136 l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 136 LRREVERLRAELQRERQ 152 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=95.78 E-value=3.1 Score=47.94 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=11.3
Q ss_pred CCCchHHHHHHHHHhhhhh
Q 003672 546 HKGLIPRSLEQIFQTSQFL 564 (804)
Q Consensus 546 ~~Gli~r~~~~lf~~~~~~ 564 (804)
..||=+.+...++..+...
T Consensus 462 d~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 462 DVGISGPTAAVVGKLLRQL 480 (553)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3566666666666655433
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.77 E-value=2.6 Score=47.33 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 205 QASLSEQLEKAHQDIAAANQRA 226 (804)
Q Consensus 205 ~~~l~~el~~l~~el~~~~~~~ 226 (804)
..-+..++..++.++...+.++
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l 194 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKL 194 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 191
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=3.7 Score=43.91 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 003672 393 SSMETRAEFEEKQRVAQELQER 414 (804)
Q Consensus 393 ~~~~~~~e~~~l~~~l~~l~~~ 414 (804)
.+..+...|..+++....|..+
T Consensus 496 slEkl~~Dyqairqen~~L~~~ 517 (521)
T KOG1937|consen 496 SLEKLHQDYQAIRQENDQLFSE 517 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444
No 192
>PF13166 AAA_13: AAA domain
Probab=95.69 E-value=6.3 Score=47.34 Aligned_cols=11 Identities=36% Similarity=0.437 Sum_probs=6.9
Q ss_pred ccHHHHHHHhc
Q 003672 79 FTKEEVEALLN 89 (804)
Q Consensus 79 ~~~eev~~ll~ 89 (804)
|+.+=|..-+.
T Consensus 66 Fn~dfv~~nl~ 76 (712)
T PF13166_consen 66 FNSDFVEDNLR 76 (712)
T ss_pred eChHHHHHhcC
Confidence 66666666554
No 193
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.63 E-value=5.1 Score=45.13 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 156 ESELNGTILDLRQENAHLREKVAKEESEK 184 (804)
Q Consensus 156 ~~el~~~l~~l~~~~~~l~~~l~~~~~e~ 184 (804)
-..+...+..++.++..+..++..+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 92 NGNEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555443
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.62 E-value=0.24 Score=52.32 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.2
Q ss_pred cceeecc
Q 003672 533 KTYTMMG 539 (804)
Q Consensus 533 Kt~t~~G 539 (804)
.+|.+||
T Consensus 217 ~~~~ly~ 223 (314)
T PF04111_consen 217 TTYPLYS 223 (314)
T ss_dssp EEEESS-
T ss_pred eEEeccc
Confidence 3333333
No 195
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.59 E-value=2.6 Score=41.37 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 130 EKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVA 178 (804)
Q Consensus 130 e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~ 178 (804)
++..++......++.+.++..+ ...+..-+..++.+...|+..+.
T Consensus 35 ei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444433 33334444444444444444443
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.46 E-value=0.85 Score=40.33 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 303 KDSLVNEVRCLRGELQQVRDDRDRQVAQV 331 (804)
Q Consensus 303 ~~~l~~el~~l~~el~~~~~~~~~l~~~~ 331 (804)
+..++.++..++.++..+...++.+..++
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 197
>PF13166 AAA_13: AAA domain
Probab=95.44 E-value=8.4 Score=46.31 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 003672 382 AANEKLKMA 390 (804)
Q Consensus 382 ~l~~~l~~~ 390 (804)
.+...+..+
T Consensus 463 ~iN~~L~~~ 471 (712)
T PF13166_consen 463 RINEELKRL 471 (712)
T ss_pred HHHHHHHHh
Confidence 333333333
No 198
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.39 E-value=3.9 Score=45.93 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQV 331 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~ 331 (804)
+..|+.+++..+..+..+..+.
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333
No 199
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.36 E-value=3.9 Score=44.08 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003672 349 LMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKL 428 (804)
Q Consensus 349 ~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~ 428 (804)
...+..+...+...+..+...+..+..++..+..++.++.........++.+++....++......+..+..+.......
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~ 299 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQ 299 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHH
Confidence 33444444444444444444444444444444444444444444444455555555555554444444443333333333
Q ss_pred Hhhhhhhhhhh
Q 003672 429 RKKLHNTILEL 439 (804)
Q Consensus 429 ~~~l~~~i~~L 439 (804)
...+...+..+
T Consensus 300 ~~~l~~~~~~l 310 (344)
T PF12777_consen 300 IEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 33333333333
No 200
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.36 E-value=2.5 Score=39.76 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 284 SLQEQLALSRASQDEATKQKDSLVNEVR 311 (804)
Q Consensus 284 ~l~~~l~~~~~~~~~l~~~~~~l~~el~ 311 (804)
.+..++..+.....-++++++-+..-+.
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333
No 201
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.27 E-value=4.9 Score=42.67 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003672 138 LESTEKKLSDT 148 (804)
Q Consensus 138 l~~l~~~~~el 148 (804)
+.-++++..++
T Consensus 224 v~flerkv~el 234 (502)
T KOG0982|consen 224 VRFLERKVQEL 234 (502)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 202
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.18 E-value=4.4 Score=41.56 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=11.1
Q ss_pred ccccccHHHHHHHhcc
Q 003672 75 GTIEFTKEEVEALLNE 90 (804)
Q Consensus 75 ~~~~~~~eev~~ll~e 90 (804)
|.-+|++++...|++-
T Consensus 8 gvnd~Sk~ELl~LfS~ 23 (561)
T KOG1103|consen 8 GVNDFSKDELLKLFSF 23 (561)
T ss_pred cccccchHHHHHHHHH
Confidence 4455888888887743
No 203
>PRK10869 recombination and repair protein; Provisional
Probab=95.13 E-value=8.3 Score=44.45 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=18.3
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEe
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFA 525 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~ 525 (804)
.+..+-||.++..=+. ..-..+..++..+-.+ ++||+
T Consensus 452 ~~~~li~DEpd~gld~--~~~~~v~~~l~~l~~~--~qvi~ 488 (553)
T PRK10869 452 ETPALIFDEVDVGISG--PTAAVVGKLLRQLGES--TQVMC 488 (553)
T ss_pred CCCEEEEECCCCCCCH--HHHHHHHHHHHHHhcC--CEEEE
Confidence 3467778877644322 1112255555555444 44443
No 204
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.12 E-value=6.2 Score=42.97 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=9.0
Q ss_pred EeeccCCCCcceeeccCCC
Q 003672 524 FAYGQTGSGKTYTMMGKPE 542 (804)
Q Consensus 524 ~~yG~t~sGKt~t~~G~~~ 542 (804)
+.++-.+|-|---|-|.|+
T Consensus 418 ls~~~aessk~i~~~~~p~ 436 (596)
T KOG4360|consen 418 LSKQLAESSKKIGMPGQPG 436 (596)
T ss_pred hcccccccccccCCCCCCC
Confidence 4445445555444444443
No 205
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.09 E-value=2.1 Score=43.58 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 003672 375 IMEIQLAAANEKLKMA 390 (804)
Q Consensus 375 ~l~~~l~~l~~~l~~~ 390 (804)
.++.+|..+..+|..+
T Consensus 186 ~lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 186 RLQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 206
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.07 E-value=14 Score=46.59 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=2.7
Q ss_pred HHHHHH
Q 003672 720 SDVIFA 725 (804)
Q Consensus 720 ~~vi~~ 725 (804)
+++|..
T Consensus 968 s~~~~~ 973 (1042)
T TIGR00618 968 ADLLST 973 (1042)
T ss_pred HHHHhh
Confidence 444443
No 207
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.06 E-value=3.8 Score=40.24 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=3.6
Q ss_pred CccceeccC
Q 003672 48 RQAFAVVNN 56 (804)
Q Consensus 48 ~~~~~~~~~ 56 (804)
|.+|..+-+
T Consensus 26 ~~s~~dl~d 34 (330)
T KOG2991|consen 26 RRSFGDLED 34 (330)
T ss_pred hhhccCccc
Confidence 334444433
No 208
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.98 E-value=1.8 Score=46.49 Aligned_cols=6 Identities=0% Similarity=-0.158 Sum_probs=2.8
Q ss_pred hhhhcc
Q 003672 26 DKRRRI 31 (804)
Q Consensus 26 ~~~~~~ 31 (804)
+.+|-+
T Consensus 39 ~eQF~~ 44 (359)
T PF10498_consen 39 GEQFYY 44 (359)
T ss_pred hHHHHH
Confidence 445444
No 209
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=94.86 E-value=6.1 Score=41.59 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccc
Q 003672 400 EFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRV 449 (804)
Q Consensus 400 e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~ 449 (804)
+.+.+-..+...+..+.++...+.+...=...+...+..+...+..||..
T Consensus 242 ~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~ 291 (296)
T PF13949_consen 242 ERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNA 291 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555556666666666665543
No 210
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.83 E-value=6.3 Score=41.60 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=6.0
Q ss_pred hhhhhhhhccccccc
Q 003672 432 LHNTILELKGNIRVF 446 (804)
Q Consensus 432 l~~~i~~Lk~~i~~~ 446 (804)
+.++...--+.+.+.
T Consensus 329 y~Ne~~~~g~s~~Va 343 (552)
T KOG2129|consen 329 YLNEFVDFGDSVEVA 343 (552)
T ss_pred HHhhhhccCCceeee
Confidence 334444444433333
No 211
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.71 E-value=4.8 Score=39.61 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003672 129 LEKQKIQSALESTEKKLSDT 148 (804)
Q Consensus 129 ~e~~~l~~el~~l~~~~~el 148 (804)
..+..|+..-..+..++.+.
T Consensus 108 d~i~nLk~se~~lkqQ~~~a 127 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQEA 127 (330)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.68 E-value=0.017 Score=57.92 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=32.5
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
.|+||.-+ .+.++...|..+..+...--..+| .++-||++|+||||.|.+
T Consensus 4 ~~tFdnfv-~g~~N~~a~~~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFV-VGESNELAYAAAKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS---TTTTHHHHHHHHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCccccCC-cCCcHHHHHHHHHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 58888865 355677777666665555222234 478899999999998843
No 213
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.67 E-value=8.5 Score=42.35 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 354 SLTTKSKSLEETCSSQREQIRIMEIQLAA 382 (804)
Q Consensus 354 ~l~~~~~~le~~~~~~~~~l~~l~~~l~~ 382 (804)
.++.....++..+..+...+.+|...+..
T Consensus 341 ~LqEksqile~sv~~l~~~lkDLd~~~~a 369 (531)
T PF15450_consen 341 LLQEKSQILEDSVAELMRQLKDLDDHILA 369 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444443333
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.64 E-value=0.076 Score=56.46 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 504 VFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 504 vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
++.....+|+.+-.+. -.|+.||++|+||||.+.+
T Consensus 168 ~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 168 ILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 4444445777776555 6699999999999998843
No 215
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.53 E-value=9.1 Score=42.05 Aligned_cols=7 Identities=57% Similarity=0.738 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 003672 430 KKLHNTI 436 (804)
Q Consensus 430 ~~l~~~i 436 (804)
+.++..|
T Consensus 378 ~~le~Ri 384 (388)
T PF04912_consen 378 KKLEERI 384 (388)
T ss_pred HHHHHHH
Confidence 3333333
No 216
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.45 E-value=11 Score=42.62 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.0
Q ss_pred CCchHHHHHHHHHh
Q 003672 547 KGLIPRSLEQIFQT 560 (804)
Q Consensus 547 ~Gli~r~~~~lf~~ 560 (804)
.||=.++...|=+.
T Consensus 464 ~GIsG~~A~aVg~~ 477 (557)
T COG0497 464 TGISGRVAQAVGKK 477 (557)
T ss_pred CCCChHHHHHHHHH
Confidence 34444444444333
No 217
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.42 E-value=4.3 Score=37.87 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 308 NEVRCLRGELQQVRDDRDRQVAQVQTLTAEI 338 (804)
Q Consensus 308 ~el~~l~~el~~~~~~~~~l~~~~~~l~~el 338 (804)
-++.-++.+-..++..++.++..+..+..-+
T Consensus 91 ~~L~~~re~E~qLr~rRD~LErrl~~l~~ti 121 (159)
T PF05384_consen 91 VRLAMLREREKQLRERRDELERRLRNLEETI 121 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333333
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.39 E-value=2.7 Score=45.03 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003672 408 AQELQERLAE 417 (804)
Q Consensus 408 l~~l~~~~~~ 417 (804)
+.+|++++.+
T Consensus 437 I~dLqEQlrD 446 (493)
T KOG0804|consen 437 ITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 219
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.37 E-value=7 Score=40.11 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003672 303 KDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKS 359 (804)
Q Consensus 303 ~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~ 359 (804)
.++++..-+.+.+++-..+.-......+.+.++.-+..++++...++-.++.+..+.
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333444444444444443334444444444444444443333333333333333
No 220
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=94.36 E-value=5 Score=40.79 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=50.3
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 345 TGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEH 420 (804)
Q Consensus 345 ~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~ 420 (804)
+.....++..+...+..+..+...+..+|+....+++..+..+..+........++++.++.+++.++..+-.--.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555556666666666666677777777777778888888888888888877655433
No 221
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.11 E-value=8 Score=39.73 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.4
Q ss_pred eeEEee
Q 003672 521 VCIFAY 526 (804)
Q Consensus 521 ~~v~~y 526 (804)
+.||.|
T Consensus 298 gmlfVY 303 (401)
T PF06785_consen 298 GMLFVY 303 (401)
T ss_pred ceEEEe
Confidence 334443
No 222
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.1 Score=56.82 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=55.7
Q ss_pred eeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec------cCCCC--ccCCCchHHHHHHHH
Q 003672 487 FPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM------GKPEA--QEHKGLIPRSLEQIF 558 (804)
Q Consensus 487 ~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~------G~~~~--~~~~Gli~r~~~~lf 558 (804)
..|....-|.|.-.|.. .|..+|..+-+|...-++ .|.|||||||||- +.|.- ..++-| ..+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTL----AaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTL----AAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhH----HHHHH
Confidence 35677777888777753 466688888888777665 6999999999993 22210 012222 33444
Q ss_pred HhhhhhhhcCcEEEEEEEEeeeech
Q 003672 559 QTSQFLLVQGWKFKMQASMLEIYNE 583 (804)
Q Consensus 559 ~~~~~~~~~~~~~~v~~S~~Ei~~e 583 (804)
..... -.+...+...|||+..|.-
T Consensus 75 ~Efk~-fFP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 75 SEFKE-FFPENAVEYFVSYYDYYQP 98 (663)
T ss_pred HHHHH-hCcCcceEEEeeeccccCc
Confidence 43322 2345567778899988853
No 223
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.77 E-value=0.12 Score=53.45 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.7
Q ss_pred cEEEEEEEE
Q 003672 569 WKFKMQASM 577 (804)
Q Consensus 569 ~~~~v~~S~ 577 (804)
..|.|.|||
T Consensus 272 asFpvdvsf 280 (326)
T PF04582_consen 272 ASFPVDVSF 280 (326)
T ss_dssp S-EEEEEEE
T ss_pred cCCceEEEE
Confidence 356666655
No 224
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=93.74 E-value=8.4 Score=38.69 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 299 ATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVK 340 (804)
Q Consensus 299 l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~ 340 (804)
....+......+..++..+...+..+...-..++.+..+|..
T Consensus 182 ~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 182 FNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555443
No 225
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.72 E-value=0.033 Score=56.50 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=26.4
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 510 QLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 510 ~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+++..+++-.++.|+.-||||||||+||
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 5888899999999999999999999998
No 226
>PRK06620 hypothetical protein; Validated
Probab=93.63 E-value=0.039 Score=54.99 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=35.8
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCC---eeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYK---VCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n---~~v~~yG~t~sGKt~t~~ 538 (804)
....|+||.-+ ...++...|..+..+.... |+| -.++-||++||||||.+.
T Consensus 9 ~~~~~tfd~Fv-vg~~N~~a~~~~~~~~~~~--~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 9 TSSKYHPDEFI-VSSSNDQAYNIIKNWQCGF--GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCchhhE-ecccHHHHHHHHHHHHHcc--ccCCCcceEEEECCCCCCHHHHHH
Confidence 34568889866 4555566777766655421 333 458999999999999985
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=93.62 E-value=22 Score=43.12 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 104 EQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 104 e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
+.+...|...+..|--+.........+++++-.+.+.++.++.-++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMR 178 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333444333333333333333455566666666666666666666
No 228
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=27 Score=43.98 Aligned_cols=8 Identities=38% Similarity=0.518 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 003672 81 KEEVEALL 88 (804)
Q Consensus 81 ~eev~~ll 88 (804)
+.+...++
T Consensus 162 ~~eR~~il 169 (1042)
T TIGR00618 162 SKEKKELL 169 (1042)
T ss_pred HHHHHHHH
Confidence 44444444
No 229
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.55 E-value=18 Score=41.84 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 127 HVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 127 ~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
.......|..+|..++.++..+-..
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~ 83 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSA 83 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.55 E-value=14 Score=40.61 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003672 127 HVLEKQKIQSALESTEKKLSDT 148 (804)
Q Consensus 127 ~~~e~~~l~~el~~l~~~~~el 148 (804)
....+..|+.+++++..++...
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 231
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.55 E-value=0.14 Score=52.85 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 003672 407 VAQELQERLAEAE 419 (804)
Q Consensus 407 ~l~~l~~~~~~l~ 419 (804)
.+.+|+.++..++
T Consensus 141 ~ItdLe~RV~~LE 153 (326)
T PF04582_consen 141 NITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHh
Confidence 3444444444444
No 232
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.53 E-value=9.8 Score=44.54 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.2
Q ss_pred CCceeeEeecc
Q 003672 483 NGQKFPFTFDK 493 (804)
Q Consensus 483 ~~~~~~~~fd~ 493 (804)
.|...+|+...
T Consensus 402 TGSGKTyTM~G 412 (670)
T KOG0239|consen 402 TGSGKTYTMSG 412 (670)
T ss_pred cCCCccccccC
Confidence 34444555444
No 233
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.33 E-value=0.11 Score=56.95 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.3
Q ss_pred CeeEEeeccCCCCcceee
Q 003672 520 KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~ 537 (804)
...|+.||++|+|||++.
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 446899999999999875
No 234
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.06 E-value=21 Score=41.26 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=4.2
Q ss_pred eeEeeccc
Q 003672 487 FPFTFDKV 494 (804)
Q Consensus 487 ~~~~fd~v 494 (804)
..|-||+|
T Consensus 446 ~~FL~~g~ 453 (660)
T KOG4302|consen 446 RPFLVDGV 453 (660)
T ss_pred CceeecCc
Confidence 45555554
No 235
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=16 Score=39.84 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=9.8
Q ss_pred eeeechhhhhhcCC
Q 003672 578 LEIYNETIRDLLST 591 (804)
Q Consensus 578 ~Ei~~e~v~DLL~~ 591 (804)
+|..+++++||+..
T Consensus 497 iefLe~h~~qlvee 510 (613)
T KOG0992|consen 497 IEFLEQHLIQLVEE 510 (613)
T ss_pred hHHHHHHHHHHHHH
Confidence 45567888888753
No 236
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.99 E-value=17 Score=40.09 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 132 QKIQSALESTEKKLSDTEMEMKN 154 (804)
Q Consensus 132 ~~l~~el~~l~~~~~ele~~l~~ 154 (804)
.++..+...+..++..+-.++.-
T Consensus 163 ~k~d~E~arm~aqi~~l~eEmS~ 185 (531)
T PF15450_consen 163 QKVDNEVARMQAQITKLGEEMSL 185 (531)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=92.83 E-value=0.082 Score=53.44 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
....+.||..++.+ +..- +..+...+-.+++.+++-||++|+||||.+.+
T Consensus 9 ~~~~~~fd~f~~~~-~~~~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 9 QIDDETLDNFYADN-NLLL----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCCcccccccccCC-hHHH----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 34568899988654 2221 11233333457788899999999999999843
No 238
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.62 E-value=23 Score=40.56 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLT 356 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~ 356 (804)
-+++...+...+..+..++.++.-.+.+...+...+.+++.....++
T Consensus 1061 RDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~R 1107 (1480)
T COG3096 1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMR 1107 (1480)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444444444444444444444444444444333
No 239
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.56 E-value=9.5 Score=36.02 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHHH
Q 003672 280 GHNNSLQEQLALS 292 (804)
Q Consensus 280 ~~~~~l~~~l~~~ 292 (804)
.+..-++.+++-.
T Consensus 71 tRCslLEKQLeyM 83 (178)
T PF14073_consen 71 TRCSLLEKQLEYM 83 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 240
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.55 E-value=8.6 Score=39.36 Aligned_cols=13 Identities=38% Similarity=0.350 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q 003672 379 QLAAANEKLKMAD 391 (804)
Q Consensus 379 ~l~~l~~~l~~~~ 391 (804)
++..++..+...+
T Consensus 132 Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 132 RLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHhhhccC
Confidence 3444444444433
No 241
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.50 E-value=8 Score=38.83 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 003672 110 NKRFKLCIKWFQ 121 (804)
Q Consensus 110 l~~l~~~i~~l~ 121 (804)
+..-+.+|+.++
T Consensus 63 LQQKEV~iRHLk 74 (305)
T PF15290_consen 63 LQQKEVCIRHLK 74 (305)
T ss_pred HHHHHHHHHHHH
Confidence 334444555443
No 242
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.48 E-value=0.89 Score=55.23 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=27.4
Q ss_pred eccccCCCCChhHHHHHHHHHHHHhhcCCC------eeEEeeccCCCCcceee
Q 003672 491 FDKVFNHEASQQDVFLEISQLVQSALDGYK------VCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 491 fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n------~~v~~yG~t~sGKt~t~ 537 (804)
+.+|++ |...-..|...|..+..|.. ++++-+|++|+|||++.
T Consensus 567 ~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 455664 44444555554444443322 57888899999999976
No 243
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.41 E-value=0.087 Score=53.50 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=34.0
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
....|.||.-+. . .+...+..+..++. ......++-||++|+||||.+.
T Consensus 15 ~~~~~~fd~f~~-~-~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYP-G-DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCcccccc-C-ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 445577886554 3 66667766666543 2233478999999999999984
No 244
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.35 E-value=6.7 Score=39.37 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=4.9
Q ss_pred CChhHHHHH
Q 003672 499 ASQQDVFLE 507 (804)
Q Consensus 499 ~~q~~vf~~ 507 (804)
++-.++|.+
T Consensus 228 ~~~~Dll~e 236 (305)
T PF15290_consen 228 ASRTDLLEE 236 (305)
T ss_pred ccchhHHHH
Confidence 455556555
No 245
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.33 E-value=0.059 Score=59.01 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
-...+..++..-++.|+.-||||||||+||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 33467788899999999999999999999974
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.28 E-value=9.6 Score=40.51 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=11.4
Q ss_pred HhhcCCCeeEEeeccCCCCccee
Q 003672 514 SALDGYKVCIFAYGQTGSGKTYT 536 (804)
Q Consensus 514 ~~~~G~n~~v~~yG~t~sGKt~t 536 (804)
+.|.|.++.|...--...||...
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred hhhhccCCCcceeeecCCCceEE
Confidence 34555555555544444454333
No 247
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=12 Score=42.09 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.8
Q ss_pred ccccHHHHHHHhcccc
Q 003672 77 IEFTKEEVEALLNEKP 92 (804)
Q Consensus 77 ~~~~~eev~~ll~e~~ 92 (804)
..|+..||-.+..+.-
T Consensus 273 r~~~~~eVve~I~~lG 288 (652)
T COG2433 273 RGIDRSEVVEFISELG 288 (652)
T ss_pred ccCCHHHHHHHHHHcC
Confidence 3388999988886643
No 248
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=8.6 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 359 SKSLEETCSSQREQIRIMEIQLAAA 383 (804)
Q Consensus 359 ~~~le~~~~~~~~~l~~l~~~l~~l 383 (804)
+..|+.++.+....++.|+.++..+
T Consensus 483 I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 483 IERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 249
>PRK12377 putative replication protein; Provisional
Probab=92.21 E-value=0.094 Score=53.32 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=35.7
Q ss_pred eeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 490 TFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 490 ~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
.||.-...+..+..++..+..++..+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 355544445566667777777888877654 4678899999999999843
No 250
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.91 E-value=39 Score=41.72 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=7.6
Q ss_pred HHhhcCCCeeE
Q 003672 513 QSALDGYKVCI 523 (804)
Q Consensus 513 ~~~~~G~n~~v 523 (804)
.+.|.||+-|-
T Consensus 1309 ~~wf~gyd~cn 1319 (1320)
T PLN03188 1309 SSWFSGYDRCN 1319 (1320)
T ss_pred chhhccCcccC
Confidence 35678888773
No 251
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.63 E-value=17 Score=37.02 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=8.9
Q ss_pred ccccCCCCCCCCcccccccHH
Q 003672 62 AASDMASTEGSDCGTIEFTKE 82 (804)
Q Consensus 62 ~~~~~~~g~~~~~~~~~~~~e 82 (804)
|+..++++...+...|.|-+.
T Consensus 35 P~~~i~~~i~tE~dRV~Fik~ 55 (267)
T PF10234_consen 35 PDADIPGDIDTEQDRVFFIKS 55 (267)
T ss_pred CCCCCCCcCCcHHHHHHHHHH
Confidence 444454444433333434333
No 252
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.62 E-value=0.67 Score=50.82 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=28.0
Q ss_pred eEeeccccCCCCChhHHHHHHH-HHHH-Hhhc--C--CCeeEEeeccCCCCcceee
Q 003672 488 PFTFDKVFNHEASQQDVFLEIS-QLVQ-SALD--G--YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~-~~v~-~~~~--G--~n~~v~~yG~t~sGKt~t~ 537 (804)
.+.|+.|.+.+..-..+-..+. |+.. ..+. | ....|+.||++|+|||++.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3455555554444444433332 2221 1222 2 3456888999999999986
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.36 E-value=0.1 Score=59.50 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=35.1
Q ss_pred eeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 486 KFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 486 ~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
...|.||.-+. ..++...|.....++...-.++|. ||-||++|+||||.+.
T Consensus 282 ~~~~TFDnFvv-G~sN~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVI-GASNRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcC-CCccHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 35688888553 334555665555565544445675 8899999999999984
No 254
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.33 E-value=28 Score=38.79 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003672 309 EVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETC 366 (804)
Q Consensus 309 el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~ 366 (804)
++..|-.++............+...+...+...+.....+..++..+..++..+++++
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333444444444444444444444444444444444444444433
No 255
>COG5283 Phage-related tail protein [Function unknown]
Probab=91.31 E-value=43 Score=41.02 Aligned_cols=11 Identities=36% Similarity=0.301 Sum_probs=5.1
Q ss_pred ccccccccCCC
Q 003672 740 LTYLLQPCLGR 750 (804)
Q Consensus 740 LT~lL~~~l~g 750 (804)
+|+.++..||+
T Consensus 715 ~~~~I~~~~g~ 725 (1213)
T COG5283 715 FTDDIQFKLGK 725 (1213)
T ss_pred HHhHhhhhhcc
Confidence 34444555543
No 256
>PF15294 Leu_zip: Leucine zipper
Probab=91.27 E-value=19 Score=36.80 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003672 111 KRFKLCIKW 119 (804)
Q Consensus 111 ~~l~~~i~~ 119 (804)
+....|+..
T Consensus 11 k~Vds~F~D 19 (278)
T PF15294_consen 11 KEVDSCFQD 19 (278)
T ss_pred HHHHHhhhH
Confidence 333333443
No 257
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=91.22 E-value=24 Score=37.89 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccc
Q 003672 397 TRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRV 449 (804)
Q Consensus 397 ~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~ 449 (804)
...+.+..-+.+...+..+.++...+.+...=...|...+..+...+..||.+
T Consensus 284 ~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~~~f~~~ 336 (337)
T cd09234 284 TKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRIKSVCKV 336 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555666666666776666666666666777777777777777754
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.17 E-value=0.15 Score=51.41 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=33.5
Q ss_pred CceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 484 GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 484 ~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.....|.||..++. .+..++..+..++.. .+....|+-||++||||||.+
T Consensus 10 ~~~~~~~~d~f~~~--~~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 10 GPPPPPTFDNFVAG--ENAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCChhhhcccccC--CcHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 34466889998832 233445555554442 244568999999999999997
No 259
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.13 E-value=22 Score=37.32 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 003672 5 NQNRPPRSP 13 (804)
Q Consensus 5 ~~~~~~~~~ 13 (804)
-..+|..+|
T Consensus 112 kT~~Pt~a~ 120 (593)
T KOG4807|consen 112 KTVRPTSAP 120 (593)
T ss_pred hccCCCccH
Confidence 334444444
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.05 E-value=0.16 Score=51.53 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=33.8
Q ss_pred EeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 489 FTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 489 ~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
+.||.-......+..++..+..++..+..|. ..++.||++|+||||.+.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 3455543334556667777777777765543 378899999999999984
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.98 E-value=0.17 Score=51.04 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=34.8
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
....|+||.... ..+..++..+..++. .+....|+.||++|+||||..
T Consensus 8 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 8 LPDDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 445678888773 255666666665543 466778999999999999997
No 262
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=90.97 E-value=26 Score=37.78 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccc
Q 003672 401 FEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRV 449 (804)
Q Consensus 401 ~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~ 449 (804)
.+..-+.+...+..+.++...+.+...=...|...+..+...+..||.-
T Consensus 293 r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~f~~~ 341 (342)
T cd08915 293 REEALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLEECEDFVNA 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555555665555555555556666666677777776653
No 263
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.91 E-value=0.79 Score=49.98 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCcceee
Q 003672 520 KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~ 537 (804)
...|+.||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345889999999999887
No 264
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.87 E-value=28 Score=38.08 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003672 164 LDLRQENAHLREKVAKEE 181 (804)
Q Consensus 164 ~~l~~~~~~l~~~l~~~~ 181 (804)
.++...+..+..++..+.
T Consensus 60 ~eL~~~l~~~~~Ei~~L~ 77 (384)
T PF03148_consen 60 NELERELEELDEEIDLLE 77 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 265
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=90.84 E-value=26 Score=37.68 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003672 377 EIQLAAANEKLKMADLSSMETRAEFE 402 (804)
Q Consensus 377 ~~~l~~l~~~l~~~~~~~~~~~~e~~ 402 (804)
+..++.+-.....+...++.+++..+
T Consensus 444 q~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 444 QIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 33333444444444444444444333
No 266
>PRK08116 hypothetical protein; Validated
Probab=90.69 E-value=0.15 Score=52.78 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=35.9
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhc--CCCeeEEeeccCCCCcceeec
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALD--GYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~--G~n~~v~~yG~t~sGKt~t~~ 538 (804)
.++||.-. .+..+...|..+..+++.+.. +.+..++-||++|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 35566533 455566677777778887754 345679999999999999984
No 267
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=90.46 E-value=26 Score=37.08 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=10.2
Q ss_pred hhhhhcccccccccccCCC
Q 003672 435 TILELKGNIRVFCRVRPLL 453 (804)
Q Consensus 435 ~i~~Lk~~i~~~~r~r~~~ 453 (804)
.+..|+..+.-+..++|++
T Consensus 369 s~asLrseLeglgpvKPil 387 (558)
T PF15358_consen 369 SVASLRSELEGLGPVKPIL 387 (558)
T ss_pred HHHHHHHHhhcccCcchHH
Confidence 3444555555555566644
No 268
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=90.43 E-value=22 Score=36.19 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 003672 132 QKIQSALESTEKKL 145 (804)
Q Consensus 132 ~~l~~el~~l~~~~ 145 (804)
.....+++..+++.
T Consensus 30 N~~E~~Le~ar~~F 43 (426)
T KOG2008|consen 30 NRRETELEDARQKF 43 (426)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 269
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=90.26 E-value=0.76 Score=46.47 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHhccccccccCcccCCCceeEEEEEEEeeeccccceeeeeEEEEecCCCccc
Q 003672 631 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERL 696 (804)
Q Consensus 631 v~s~~e~~~ll~~~~~~R~~~~t~~n~~ssrsH~i~~l~i~~~~~~~~~~~~~~l~~VDLagse~~ 696 (804)
+.+.+++...+..+... ..+. ...-|.-++.|+|++.+. -.++||||+|-...
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 46788888888876542 1111 123466688888876543 35999999998543
No 270
>PRK09087 hypothetical protein; Validated
Probab=90.25 E-value=0.18 Score=50.77 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=32.5
Q ss_pred CceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 484 GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 484 ~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
.....|.||.-+. ..++..+|..+..+ ..-.+..++-||++||||||.+.
T Consensus 13 ~~~~~~~~~~Fi~-~~~N~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 13 SHDPAYGRDDLLV-TESNRAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCChhceee-cCchHHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 3445678888773 33444466644332 22235568999999999999984
No 271
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.15 E-value=26 Score=36.58 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003672 368 SQREQIRIMEIQL 380 (804)
Q Consensus 368 ~~~~~l~~l~~~l 380 (804)
.+..++..++.++
T Consensus 230 ~L~~qv~klk~qL 242 (302)
T PF09738_consen 230 ELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 272
>PRK05642 DNA replication initiation factor; Validated
Probab=90.10 E-value=0.19 Score=50.91 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=29.6
Q ss_pred eeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 486 KFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 486 ~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
...|+||.=+... +...+..+..+....-......++-||++|+||||.+.
T Consensus 13 ~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 13 RDDATFANYYPGA--NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCcccccccCcCC--hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3457888866332 23333333333222111223568899999999999984
No 273
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.72 E-value=0.19 Score=56.08 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=35.3
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
-...|+||.-+. +.++...|..+..++..- ..+|. +|-||++|+||||.+.
T Consensus 98 l~~~~tFdnFv~-g~~n~~a~~~~~~~~~~~-~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 98 LNPDYTFENFVV-GPGNSFAYHAALEVAKNP-GRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCCccccccc-CCchHHHHHHHHHHHhCc-CCCCe-EEEEcCCCCcHHHHHH
Confidence 446688998664 455666666655555431 12564 9999999999999984
No 274
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=89.67 E-value=17 Score=39.10 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003672 244 QLYNAKLQSDLETANEVNKRVEK 266 (804)
Q Consensus 244 ~~~~~~l~~~l~~~~~~l~~le~ 266 (804)
+.++..++.++.-....++.+.+
T Consensus 245 ~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 245 QDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444433
No 275
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.66 E-value=23 Score=35.27 Aligned_cols=9 Identities=44% Similarity=0.519 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003672 248 AKLQSDLET 256 (804)
Q Consensus 248 ~~l~~~l~~ 256 (804)
..|..+++.
T Consensus 114 adLhgD~el 122 (389)
T KOG4687|consen 114 ADLHGDCEL 122 (389)
T ss_pred HHHhchHHH
Confidence 333333333
No 276
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.64 E-value=30 Score=36.43 Aligned_cols=10 Identities=0% Similarity=0.288 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 003672 129 LEKQKIQSAL 138 (804)
Q Consensus 129 ~e~~~l~~el 138 (804)
+++..|..++
T Consensus 245 dq~~~LsE~~ 254 (593)
T KOG4807|consen 245 DQQNRLSEEI 254 (593)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 277
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=89.43 E-value=26 Score=37.76 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003672 249 KLQSDLETANEVNKRVEKE 267 (804)
Q Consensus 249 ~l~~~l~~~~~~l~~le~e 267 (804)
..+.++..++.++.-.+..
T Consensus 243 ~~~del~Sle~q~~~s~~q 261 (447)
T KOG2751|consen 243 EHQDELDSLEAQIEYSQAQ 261 (447)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 278
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=89.11 E-value=43 Score=37.54 Aligned_cols=12 Identities=33% Similarity=0.243 Sum_probs=6.7
Q ss_pred ccCcccCCCCCC
Q 003672 36 TTGATSTGTGRP 47 (804)
Q Consensus 36 ~~~~~~~~~g~~ 47 (804)
+.|-||+.-|..
T Consensus 93 ~sGKTytm~G~~ 104 (607)
T KOG0240|consen 93 GSGKTYTMEGIG 104 (607)
T ss_pred CCCcceeecccC
Confidence 455566666553
No 279
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=13 Score=40.77 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 003672 289 LALSRASQDEATKQ 302 (804)
Q Consensus 289 l~~~~~~~~~l~~~ 302 (804)
|..++.+..++..+
T Consensus 378 I~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 378 IEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 280
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=40 Score=36.92 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=7.1
Q ss_pred hhhhhhhhccccccccc
Q 003672 432 LHNTILELKGNIRVFCR 448 (804)
Q Consensus 432 l~~~i~~Lk~~i~~~~r 448 (804)
....|.+|...+..+.|
T Consensus 401 ~a~tikeL~~El~~yrr 417 (613)
T KOG0992|consen 401 HAETIKELEIELEEYRR 417 (613)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 281
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=4 Score=40.52 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=58.1
Q ss_pred ceeeecCCceeeEeeccccCCCCChhHHHHHHH-HHHHHhh---cCCC--eeEEeeccCCCCcceeec------------
Q 003672 477 GIDLIQNGQKFPFTFDKVFNHEASQQDVFLEIS-QLVQSAL---DGYK--VCIFAYGQTGSGKTYTMM------------ 538 (804)
Q Consensus 477 ~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~~-~~v~~~~---~G~n--~~v~~yG~t~sGKt~t~~------------ 538 (804)
.|..+..++.-...+..|=+-+...++|-+.+. |+.+.-+ -|.+ -.|+.|||.|+|||...-
T Consensus 140 si~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 140 SISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred cccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee
Confidence 456666666666667777777777777877654 6665544 2333 258999999999985442
Q ss_pred --cCCCCccCCCchHHHHHHHHHhhhh
Q 003672 539 --GKPEAQEHKGLIPRSLEQIFQTSQF 563 (804)
Q Consensus 539 --G~~~~~~~~Gli~r~~~~lf~~~~~ 563 (804)
|+.......|==||.++++|.....
T Consensus 220 vvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 3222233456779999999976543
No 282
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.33 E-value=0.27 Score=54.90 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=31.9
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
.|+||.-+. +.++...|..+..++..-=..+| .+|-||++|+||||.|.
T Consensus 111 ~~tFdnFv~-g~~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVI-GSSNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccC-CCcHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 589998553 34556566555555432111233 47889999999999984
No 283
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.29 E-value=0.26 Score=51.95 Aligned_cols=51 Identities=16% Similarity=0.353 Sum_probs=33.9
Q ss_pred EeeccccCCCCChhHHHHHHHHHHHHhhcC-CCeeEEeeccCCCCcceeecc
Q 003672 489 FTFDKVFNHEASQQDVFLEISQLVQSALDG-YKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 489 ~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G-~n~~v~~yG~t~sGKt~t~~G 539 (804)
..||.+-..+.....++..+..++.....| ..-.++.||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456655433335555666555677666544 334699999999999999853
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.10 E-value=19 Score=32.26 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 164 LDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIA 220 (804)
Q Consensus 164 ~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~ 220 (804)
..+...+.....-+.........+................++..+..++..++..+.
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444444444443333333
No 285
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.95 E-value=32 Score=34.96 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003672 236 LQEYNQSLQL 245 (804)
Q Consensus 236 l~~~~~~l~~ 245 (804)
++.....+..
T Consensus 240 l~~~~~~l~k 249 (269)
T PF05278_consen 240 LEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 286
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.78 E-value=18 Score=43.42 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q 003672 1 MASRNQNRPPRSPS 14 (804)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (804)
|.++|-|.||.+++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (726)
T PRK09841 1 MTTKNMNTPPGSTQ 14 (726)
T ss_pred CCccccCCCCCCCC
Confidence 77889999998643
No 287
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.77 E-value=2.5 Score=51.37 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHHhhcCCC------eeEEeeccCCCCcceee
Q 003672 500 SQQDVFLEISQLVQSALDGYK------VCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 500 ~q~~vf~~~~~~v~~~~~G~n------~~v~~yG~t~sGKt~t~ 537 (804)
.|+..-..|...|..+..|.+ ++++-+||||+|||++.
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 344444455555555544443 46889999999999986
No 288
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.74 E-value=0.35 Score=48.18 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=28.8
Q ss_pred HHHHH--HHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 504 VFLEI--SQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 504 vf~~~--~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
-|+++ -++++.+.--.-+.|+..|+|||||++||
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 45663 35888888888999999999999999998
No 289
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.67 E-value=0.33 Score=53.80 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=33.5
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
-...|.||.-+. +..+...|..+..+...--..+| .++-||++|+||||.+.
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 345688888332 34555566665555554211233 47789999999999983
No 290
>PRK08181 transposase; Validated
Probab=87.62 E-value=0.28 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=17.2
Q ss_pred cCCCeeEEeeccCCCCcceeecc
Q 003672 517 DGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 517 ~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 88899999999999854
No 291
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=87.50 E-value=45 Score=35.86 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 116 CIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEME 151 (804)
Q Consensus 116 ~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~ 151 (804)
.+..+..+...+..+++.+..++..+......++..
T Consensus 78 R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~ 113 (421)
T KOG2685|consen 78 RLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERA 113 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555555555555444444444
No 292
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.38 E-value=0.34 Score=54.51 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=34.7
Q ss_pred CceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 484 GQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 484 ~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
+-...|.||.-.. +.++...|..+..+....-..+| .++-||++|+||||.+.
T Consensus 114 ~l~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 114 PLNPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 3446788888332 34565566666555554322344 47889999999999984
No 293
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=87.37 E-value=34 Score=34.64 Aligned_cols=9 Identities=22% Similarity=0.180 Sum_probs=5.2
Q ss_pred cccccccCC
Q 003672 59 DVSAASDMA 67 (804)
Q Consensus 59 ~~~~~~~~~ 67 (804)
|++|+-..+
T Consensus 96 DF~p~KLks 104 (384)
T KOG0972|consen 96 DFTPAKLKS 104 (384)
T ss_pred CCCHHHhhc
Confidence 666665553
No 294
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=5 Score=39.79 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCeeEEeeccCCCCcceee
Q 003672 519 YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~ 537 (804)
.--.|+.|||.|+|||...
T Consensus 180 QPKGvlLygppgtGktLla 198 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLA 198 (404)
T ss_pred CCcceEEecCCCCchhHHH
Confidence 4446899999999998543
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=86.72 E-value=0.31 Score=39.47 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCcceee
Q 003672 512 VQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 512 v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
|..++. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 454555 3444556899999999998
No 296
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=60 Score=36.29 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=6.0
Q ss_pred ccccccccCCC
Q 003672 443 IRVFCRVRPLL 453 (804)
Q Consensus 443 i~~~~r~r~~~ 453 (804)
+...-+++||.
T Consensus 596 l~~~q~~~p~~ 606 (852)
T KOG4787|consen 596 LDKIKNVTPNT 606 (852)
T ss_pred hccccccCccc
Confidence 44455566665
No 297
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.52 E-value=25 Score=42.19 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=17.8
Q ss_pred eCCCCCChHHhHHHHHHHHHhhccccCCCcccc
Q 003672 760 ISPDSPSVGESLCSLRFAARVNACEIGVPSRQL 792 (804)
Q Consensus 760 isp~~~~~~etl~tL~fa~r~~~~~~~~~~~~~ 792 (804)
+.++.....+...+++...+...-.+|..-+..
T Consensus 671 vr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~ 703 (726)
T PRK09841 671 ARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703 (726)
T ss_pred EeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCc
Confidence 455556666666666665554433344444443
No 298
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.43 E-value=54 Score=35.69 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 130 EKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREK 176 (804)
Q Consensus 130 e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~ 176 (804)
+...+...+.+.+-+++.++.++..-.+-...++..++.++..++++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555555555555553333333333444444444444333
No 299
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.42 E-value=81 Score=37.72 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003672 129 LEKQKIQSALESTEKK 144 (804)
Q Consensus 129 ~e~~~l~~el~~l~~~ 144 (804)
.++..++.+++.++..
T Consensus 330 ~~~~~lK~ql~~l~~e 345 (913)
T KOG0244|consen 330 FEMLKLKAQLEPLQVE 345 (913)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 300
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.41 E-value=0.51 Score=51.50 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=27.3
Q ss_pred CChhHHHHHHHHHHHHhhcC-CCeeEEeeccCCCCcceee
Q 003672 499 ASQQDVFLEISQLVQSALDG-YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 499 ~~q~~vf~~~~~~v~~~~~G-~n~~v~~yG~t~sGKt~t~ 537 (804)
...+.-+..+...+..++.| ...+++.||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33444455555556665554 5568999999999999987
No 301
>PRK11519 tyrosine kinase; Provisional
Probab=85.98 E-value=42 Score=40.30 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.9
Q ss_pred CCCeeEEeeccCCCCcceee
Q 003672 518 GYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 518 G~n~~v~~yG~t~sGKt~t~ 537 (804)
+.++.+++-...|.|||++-
T Consensus 525 ~~kvi~vts~~~geGKTt~a 544 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVC 544 (719)
T ss_pred CceEEEEECCCCCCCHHHHH
Confidence 34455555557799999876
No 302
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.88 E-value=63 Score=35.91 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003672 313 LRGELQ 318 (804)
Q Consensus 313 l~~el~ 318 (804)
+..-++
T Consensus 674 L~~~iE 679 (741)
T KOG4460|consen 674 LGNAIE 679 (741)
T ss_pred HHHHHH
Confidence 333333
No 303
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=85.70 E-value=58 Score=35.38 Aligned_cols=23 Identities=4% Similarity=0.190 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003672 98 DLKAKIEQMTEHNKRFKLCIKWF 120 (804)
Q Consensus 98 ~~k~k~e~l~~~l~~l~~~i~~l 120 (804)
++..-+.+...+|..|..-+..+
T Consensus 116 eLEe~C~eQAakIeQLNrLVqQy 138 (488)
T PF06548_consen 116 ELEEVCAEQAAKIEQLNRLVQQY 138 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 304
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.68 E-value=56 Score=35.22 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003672 167 RQENAHLRE 175 (804)
Q Consensus 167 ~~~~~~l~~ 175 (804)
+..+++|..
T Consensus 179 Ee~ieeL~q 187 (446)
T KOG4438|consen 179 EENIEELNQ 187 (446)
T ss_pred HHHHHHHHH
Confidence 333333333
No 305
>PRK10436 hypothetical protein; Provisional
Probab=85.53 E-value=0.36 Score=53.85 Aligned_cols=30 Identities=37% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
...+..++..-++.|+..|+||||||+||+
T Consensus 207 ~~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 207 LAQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 345666777889999999999999999995
No 306
>PRK08727 hypothetical protein; Validated
Probab=85.52 E-value=0.49 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCcceeec
Q 003672 521 VCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t~~ 538 (804)
-.|+-||++||||||.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999984
No 307
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.46 E-value=0.43 Score=51.72 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=32.6
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
-...|+||.-. .+.++.-.|.....+-+ .-.+..--||-||++|+||||.|.
T Consensus 80 l~~~ytFdnFv-~g~~N~~A~aa~~~va~-~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 80 LNPKYTFDNFV-VGPSNRLAYAAAKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCCchhhee-eCCchHHHHHHHHHHHh-ccCCcCCcEEEECCCCCCHHHHHH
Confidence 44568898844 55555555543322222 222334457789999999999994
No 308
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.6 Score=50.52 Aligned_cols=30 Identities=40% Similarity=0.692 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCCee-EEeeccCCCCcceee
Q 003672 508 ISQLVQSALDGYKVC-IFAYGQTGSGKTYTM 537 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~-v~~yG~t~sGKt~t~ 537 (804)
+..++..++.|.-.. ++.||+||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334556666554444 999999999999987
No 309
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.35 E-value=0.66 Score=51.27 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhhc-CCCeeEEeeccCCCCcceee
Q 003672 501 QQDVFLEISQLVQSALD-GYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 501 q~~vf~~~~~~v~~~~~-G~n~~v~~yG~t~sGKt~t~ 537 (804)
-++-+..+...+..++. +...+++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444555566666664 44567899999999999987
No 310
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.29 E-value=61 Score=35.23 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003672 394 SMETRAEFEEKQRVAQELQERLAEAEHQL 422 (804)
Q Consensus 394 ~~~~~~e~~~l~~~l~~l~~~~~~l~~~l 422 (804)
+.....+++.++.+.+..+..+..+...+
T Consensus 273 l~~~~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 273 LNEQTADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444433
No 311
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.11 E-value=51 Score=34.17 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 309 EVRCLRGELQQVRDDRDRQVAQVQTLTAEIV 339 (804)
Q Consensus 309 el~~l~~el~~~~~~~~~l~~~~~~l~~el~ 339 (804)
+++.......-+..+...+.+-+..++....
T Consensus 260 el~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 260 ELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3333333333333333334444444444433
No 312
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=84.71 E-value=64 Score=34.98 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhccccccccc
Q 003672 397 TRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCR 448 (804)
Q Consensus 397 ~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r 448 (804)
...+.+..-+.+...+..+.++...+.+...=...|...+..++..+..|+.
T Consensus 303 ~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~ 354 (356)
T cd09237 303 KQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVN 354 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555566666666665555555666666666666666654
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=84.33 E-value=0.5 Score=42.06 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=23.7
Q ss_pred cccCCCCChhHHHHHHHHHHHHhhcCCCeeE-EeeccCCCCcceee
Q 003672 493 KVFNHEASQQDVFLEISQLVQSALDGYKVCI-FAYGQTGSGKTYTM 537 (804)
Q Consensus 493 ~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v-~~yG~t~sGKt~t~ 537 (804)
++|+..--.+.|...|...+.+- ......| --.|+||+||||+-
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-~p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-NPRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-CCCCCEEEEeecCCCCcHHHHH
Confidence 34544444444444444333222 2333344 46799999999985
No 314
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=84.28 E-value=71 Score=35.20 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 003672 103 IEQMTEHNKR 112 (804)
Q Consensus 103 ~e~l~~~l~~ 112 (804)
++.+...+..
T Consensus 94 i~~lk~~l~~ 103 (424)
T PF03915_consen 94 IEELKQELDE 103 (424)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 315
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=84.21 E-value=53 Score=33.66 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=4.9
Q ss_pred CchHHHHHHHH
Q 003672 548 GLIPRSLEQIF 558 (804)
Q Consensus 548 Gli~r~~~~lf 558 (804)
..++-+|.|++
T Consensus 285 D~VsG~LYD~L 295 (351)
T PF07058_consen 285 DSVSGFLYDML 295 (351)
T ss_pred CcchHHHHHHH
Confidence 34444444444
No 316
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.13 E-value=0.43 Score=55.07 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
...+..++...++.|+..|+||||||+||+.
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 3456677788889999999999999999853
No 317
>PRK11519 tyrosine kinase; Provisional
Probab=84.02 E-value=54 Score=39.34 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=13.3
Q ss_pred CCcceeeccCCCCccCCCchHHHHHHHH
Q 003672 531 SGKTYTMMGKPEAQEHKGLIPRSLEQIF 558 (804)
Q Consensus 531 sGKt~t~~G~~~~~~~~Gli~r~~~~lf 558 (804)
.+|+.++.+..+. ..+.-+...+...|
T Consensus 525 ~~kvi~vts~~~g-eGKTt~a~nLA~~l 551 (719)
T PRK11519 525 QNNVLMMTGVSPS-IGKTFVCANLAAVI 551 (719)
T ss_pred CceEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 4577776664332 22334445555545
No 318
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=84.02 E-value=94 Score=36.41 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHH
Q 003672 127 HVLEKQKIQSALEST 141 (804)
Q Consensus 127 ~~~e~~~l~~el~~l 141 (804)
++.++++|+.++-..
T Consensus 434 Le~elekLk~eilKA 448 (762)
T PLN03229 434 LEGEVEKLKEQILKA 448 (762)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555555443
No 319
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=83.85 E-value=2.3 Score=45.50 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=41.8
Q ss_pred ec-cccCCCCChhHHHHHHHHHHHHhhcC---CCeeEEeeccCCCCccee---------------------ecc----CC
Q 003672 491 FD-KVFNHEASQQDVFLEISQLVQSALDG---YKVCIFAYGQTGSGKTYT---------------------MMG----KP 541 (804)
Q Consensus 491 fd-~vf~~~~~q~~vf~~~~~~v~~~~~G---~n~~v~~yG~t~sGKt~t---------------------~~G----~~ 541 (804)
|| .||+.+ +....+...+..+..| .+-.++-.||.|||||+. +-| +|
T Consensus 49 F~~~~~G~~----~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 49 FDHDFFGME----EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred cchhccCcH----HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 45 677644 3344433444444443 456789999999999854 334 44
Q ss_pred CCccCCCchHHHHHHHHH
Q 003672 542 EAQEHKGLIPRSLEQIFQ 559 (804)
Q Consensus 542 ~~~~~~Gli~r~~~~lf~ 559 (804)
-...-.||+|...+..|.
T Consensus 125 ~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 125 MHEDPLHLFPDELREDLE 142 (361)
T ss_pred CccCCcccCCHHHHHHHH
Confidence 445567889998888884
No 320
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.74 E-value=43 Score=32.25 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 114 KLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESEL---------NGTILDLRQENAHLREKVAKEESEK 184 (804)
Q Consensus 114 ~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el---------~~~l~~l~~~~~~l~~~l~~~~~e~ 184 (804)
+..+..+.+.......-+.+|+..+..++..+.+++.+ +..- ...-......+..+-..|++.+...
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~----l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~ 76 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQ----LSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRS 76 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccCcCcccccccccccCcccHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 185 LDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRV 264 (804)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~l 264 (804)
..+......+++++.........|..++..+..+...+..++..-+ .........+..++..-...+-.+-.++..+
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke---~~~~~ee~~~~~y~~~eh~rll~LWr~v~~l 153 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE---AEWREEEENFNQYLSSEHSRLLSLWREVVAL 153 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 003672 265 EKEKLTIVEN 274 (804)
Q Consensus 265 e~e~~~l~~~ 274 (804)
.....++...
T Consensus 154 Rr~f~elr~~ 163 (182)
T PF15035_consen 154 RRQFAELRTA 163 (182)
T ss_pred HHHHHHHHHH
No 321
>PRK06526 transposase; Provisional
Probab=83.59 E-value=0.5 Score=48.43 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=15.2
Q ss_pred EEeeccCCCCcceeecc
Q 003672 523 IFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 523 v~~yG~t~sGKt~t~~G 539 (804)
|+.||++|+||||++.+
T Consensus 101 lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred EEEEeCCCCchHHHHHH
Confidence 78899999999999853
No 322
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.54 E-value=0.66 Score=52.30 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
....+..++....+.|+..|+||||||+||.
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3445666777888899999999999999995
No 323
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.47 E-value=0.75 Score=42.11 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434557889999999999876
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=83.47 E-value=0.37 Score=46.66 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 505 FLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 505 f~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
++.+..++.....|...+++.+|++|+|||+.+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 334445555334677788999999999999986
No 325
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.27 E-value=0.97 Score=46.34 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.8
Q ss_pred ccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceeecc
Q 003672 492 DKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 492 d~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~G 539 (804)
..+-..+..+..+|..+..++..+-.|.| ++-||++|+||||...+
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 33333455777888888888877774444 55589999999999843
No 326
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.96 E-value=92 Score=35.48 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=9.1
Q ss_pred CCCchHHHHHHHHHhh
Q 003672 546 HKGLIPRSLEQIFQTS 561 (804)
Q Consensus 546 ~~Gli~r~~~~lf~~~ 561 (804)
-.|=+..++-+....+
T Consensus 466 IsG~~A~aVg~~L~~L 481 (557)
T COG0497 466 ISGRVAQAVGKKLRRL 481 (557)
T ss_pred CChHHHHHHHHHHHHH
Confidence 3455566666665554
No 327
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=82.90 E-value=25 Score=36.10 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCchhhhhcc-ccCcccCcccCCCCCCCccceeccCcccccccccCCCCCCCCcccccc
Q 003672 1 MASRNQNRPPRSPSIKKEGTDDVPFDKRRRI-GAGRTTGATSTGTGRPRQAFAVVNNRQDVSAASDMASTEGSDCGTIEF 79 (804)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (804)
|+|....||-.---+-|-.+.-.+-+.-+++ .+.+|-||++++.|.+-.+|++...
T Consensus 54 ypssgRrrpi~~e~~Ek~~~eK~SR~~~~~sa~~~~~l~g~ssRrgsgdts~~iD~E----------------------- 110 (405)
T KOG2010|consen 54 YPSSGRRRPILDEKSEKQYAEKYSRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPE----------------------- 110 (405)
T ss_pred CCCCCCCCcccccchHHHHHHhccCccchhhhhhcccccccccccccCCcccccChH-----------------------
Q ss_pred cHHHHHHHhccccCcchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 80 TKEEVEALLNEKPKTKKFDLKA-KIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESE 158 (804)
Q Consensus 80 ~~eev~~ll~e~~~~~k~~~k~-k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~e 158 (804)
....+.+. ++.++++..+..-.....+......+.-+..-|+..+.+++.++.+-..+ ..+
T Consensus 111 --------------As~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re----~ee 172 (405)
T KOG2010|consen 111 --------------ASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRE----NEE 172 (405)
T ss_pred --------------HHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 159 LNGTILDLRQENAHLREKVAKEESEKLDAIENHRI 193 (804)
Q Consensus 159 l~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~ 193 (804)
+..+++.++..+..|+.+.++++..+..-.+-+++
T Consensus 173 k~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 173 KSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 328
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=82.80 E-value=0.73 Score=44.34 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHHhhcC-CCeeEEeeccCCCCcceeec
Q 003672 511 LVQSALDG-YKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 511 ~v~~~~~G-~n~~v~~yG~t~sGKt~t~~ 538 (804)
++..+-.+ ...-++..++||||||++|.
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 44444444 46667778899999999995
No 329
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.74 E-value=0.54 Score=47.37 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=22.2
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+..+...+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 444555445677889999999999999987
No 330
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=82.52 E-value=1.3 Score=44.35 Aligned_cols=132 Identities=19% Similarity=0.314 Sum_probs=71.2
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhcCCCe-eEEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhh
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALDGYKV-CIFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLV 566 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~-~v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~ 566 (804)
...+|...+-+.....+... ...++.|..+ .|+.||..|+|||.++-+ +-.-| ..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~N----t~~Fl~G~pannvLL~G~rGtGKSSlVka--------------ll~~y------~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIEN----TEQFLQGLPANNVLLWGARGTGKSSLVKA--------------LLNEY------AD 78 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHH----HHHHHcCCCCcceEEecCCCCCHHHHHHH--------------HHHHH------hh
Confidence 34456666555444444443 4566777766 477799999999988722 22212 22
Q ss_pred cCcEEEEEEEEeeeechhhhhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEE-cCCHHHHHHHHHHHH
Q 003672 567 QGWKFKMQASMLEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVD-VCSISEISSLLRQAA 645 (804)
Q Consensus 567 ~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-v~s~~e~~~ll~~~~ 645 (804)
.+ +.++||..+.+.||-.--.. -.. .+.++.+..|. |+.-. =.+...+..+|+.+.
T Consensus 79 ~G------LRlIev~k~~L~~l~~l~~~--------l~~-~~~kFIlf~DD--------LsFe~~d~~yk~LKs~LeGgl 135 (249)
T PF05673_consen 79 QG------LRLIEVSKEDLGDLPELLDL--------LRD-RPYKFILFCDD--------LSFEEGDTEYKALKSVLEGGL 135 (249)
T ss_pred cC------ceEEEECHHHhccHHHHHHH--------Hhc-CCCCEEEEecC--------CCCCCCcHHHHHHHHHhcCcc
Confidence 23 67899998777666321000 000 11344444443 22100 123455666676665
Q ss_pred hccccccccCcccCCCceeEEE
Q 003672 646 QSRSVGKTQMNEYSSRSHFVFT 667 (804)
Q Consensus 646 ~~R~~~~t~~n~~ssrsH~i~~ 667 (804)
..| .......++|.|=|+|=.
T Consensus 136 e~~-P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 136 EAR-PDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ccC-CCcEEEEEecchhhccch
Confidence 444 344455667777777653
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.38 E-value=0.47 Score=46.73 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.5
Q ss_pred CeeEEeeccCCCCcceeec
Q 003672 520 KVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~~ 538 (804)
++.|+-.|+||||||+++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578999999999999983
No 332
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.24 E-value=1.1 Score=52.72 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhhcC--CCeeEEeeccCCCCcceee
Q 003672 502 QDVFLEISQLVQSALDG--YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 502 ~~vf~~~~~~v~~~~~G--~n~~v~~yG~t~sGKt~t~ 537 (804)
++=+..|..++..++.| -+.+++.||++|+|||.|+
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33444566677777754 4457889999999999997
No 333
>PRK12704 phosphodiesterase; Provisional
Probab=82.22 E-value=99 Score=35.35 Aligned_cols=11 Identities=0% Similarity=0.090 Sum_probs=5.5
Q ss_pred ChhHHHHHHHH
Q 003672 500 SQQDVFLEISQ 510 (804)
Q Consensus 500 ~q~~vf~~~~~ 510 (804)
.-++++..+..
T Consensus 283 ~iee~~~~~~~ 293 (520)
T PRK12704 283 RIEEMVEKARK 293 (520)
T ss_pred CHHHHHHHHHH
Confidence 44555554443
No 334
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=81.82 E-value=79 Score=33.96 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhccccccccc
Q 003672 400 EFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCR 448 (804)
Q Consensus 400 e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r 448 (804)
+.+..-+.+...+..+.++...+.+...=...|...+..++..+..||.
T Consensus 289 ~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 289 EREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666666666666555556666666666666666664
No 335
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.70 E-value=1.2e+02 Score=35.74 Aligned_cols=12 Identities=0% Similarity=0.144 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 003672 376 MEIQLAAANEKL 387 (804)
Q Consensus 376 l~~~l~~l~~~l 387 (804)
|+..++.++.++
T Consensus 671 LK~k~E~Lk~Ev 682 (762)
T PLN03229 671 LKSKIELLKLEV 682 (762)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 336
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.61 E-value=0.72 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.7
Q ss_pred hhcCCCeeEEeeccCCCCcceeec
Q 003672 515 ALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 515 ~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
++.-....|+..|+||||||+||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 334457899999999999999983
No 337
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.61 E-value=0.74 Score=49.58 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=28.2
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+-.||.+++ +..+...+..++. .|....++-||++|+|||+++
T Consensus 11 P~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 11 PALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHH
Confidence 445777764 4445554444433 344345888999999999987
No 338
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.60 E-value=0.45 Score=43.06 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.2
Q ss_pred CeeEEeeccCCCCcceee
Q 003672 520 KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~ 537 (804)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 468899999999999987
No 339
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.50 E-value=0.71 Score=49.76 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 510 QLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 510 ~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
+.+..++.-....|+..|+||||||+||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 34445554446789999999999999994
No 340
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=81.36 E-value=66 Score=32.70 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003672 257 ANEVNKRVEKEKLTIVENL 275 (804)
Q Consensus 257 ~~~~l~~le~e~~~l~~~l 275 (804)
++--+.++..-...+....
T Consensus 225 WR~H~~QM~s~~~nIe~~~ 243 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKV 243 (384)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333
No 341
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.30 E-value=97 Score=34.62 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=4.2
Q ss_pred ceEecCCC
Q 003672 463 SIISYPTS 470 (804)
Q Consensus 463 ~~~~~p~~ 470 (804)
.+|..|.+
T Consensus 243 viV~LP~~ 250 (475)
T PRK10361 243 VIVRLPQG 250 (475)
T ss_pred EEEECCCC
Confidence 35555654
No 342
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=81.08 E-value=94 Score=34.34 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003672 366 CSSQREQIRIMEIQLAAANEKLKMAD--LSSMETRAEFEEKQRVAQELQERLA 416 (804)
Q Consensus 366 ~~~~~~~l~~l~~~l~~l~~~l~~~~--~~~~~~~~e~~~l~~~l~~l~~~~~ 416 (804)
+..++.++..+++++...+.++..-. ..+.....+|+.+.-+....+..+.
T Consensus 316 V~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~ 368 (434)
T PRK15178 316 IPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWE 368 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444443211 1234455556666655555554443
No 343
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=81.07 E-value=3.8 Score=44.50 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 003672 344 STGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSM 395 (804)
Q Consensus 344 ~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~ 395 (804)
.+..++..+..+...+..+...+.....++..+...+.+++......+..+-
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEE
Confidence 3334444444444444444444444455555566666666666555554443
No 344
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.86 E-value=1 Score=50.15 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=35.0
Q ss_pred ceeeEeeccccCCCCChhHHHHHHHHHHHHh--hcC--CCeeEEeeccCCCCcceeec
Q 003672 485 QKFPFTFDKVFNHEASQQDVFLEISQLVQSA--LDG--YKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 485 ~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~--~~G--~n~~v~~yG~t~sGKt~t~~ 538 (804)
-...|+||.-+. +.++...|..+..+.... ..| +| .++-||++|+||||.+.
T Consensus 104 l~~~~tFdnFv~-g~~N~~a~~~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLV-TPENDLPHRILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceee-CCcHHHHHHHHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 446688998553 446666666666665543 223 34 46779999999999984
No 345
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=80.85 E-value=83 Score=33.56 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHHh
Q 003672 500 SQQDVFLEISQLVQSA 515 (804)
Q Consensus 500 ~q~~vf~~~~~~v~~~ 515 (804)
-|+-+-..+.|+|+.+
T Consensus 430 LqqllerAltplvdev 445 (558)
T PF15358_consen 430 LQQLLERALTPLVDEV 445 (558)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3443444577777765
No 346
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=80.85 E-value=0.78 Score=49.65 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+++.++. .++.|+..|+||||||+||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 4444443 4567888999999999998
No 347
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=80.82 E-value=91 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003672 370 REQIRIMEIQLAAANEKLK 388 (804)
Q Consensus 370 ~~~l~~l~~~l~~l~~~l~ 388 (804)
+.+...|+.+|.+.-+.++
T Consensus 409 ~~eNk~L~~QLrDTAEAVq 427 (488)
T PF06548_consen 409 KDENKGLQIQLRDTAEAVQ 427 (488)
T ss_pred HHHhHHHHHHHHhHHHHHH
Confidence 3334444444444443333
No 348
>PRK06921 hypothetical protein; Provisional
Probab=80.80 E-value=1.3 Score=45.89 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhc---CCCeeEEeeccCCCCcceeec
Q 003672 504 VFLEISQLVQSALD---GYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 504 vf~~~~~~v~~~~~---G~n~~v~~yG~t~sGKt~t~~ 538 (804)
++.....++..+-. +..-.|+.||++|+||||.+.
T Consensus 98 ~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 34334456666542 335578899999999999984
No 349
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=80.64 E-value=63 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.020 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 205 QASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVN 261 (804)
Q Consensus 205 ~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l 261 (804)
+.....+++...+-....-.++......+-...+.+..|-.+...++.....+...+
T Consensus 80 iNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L 136 (254)
T KOG2196|consen 80 INKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQEL 136 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333334444444444444444444444444433333333333
No 350
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.55 E-value=5.3 Score=46.69 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=28.5
Q ss_pred EeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 489 FTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 489 ~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
..||.+++.+. ... .++..+..++...|+-||++|+|||+..
T Consensus 151 ~~~~~iiGqs~----~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQER----AIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCcH----HHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 44677775432 222 2344455677778889999999999876
No 351
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.49 E-value=67 Score=32.23 Aligned_cols=19 Identities=11% Similarity=0.471 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003672 263 RVEKEKLTIVENLSTLRGH 281 (804)
Q Consensus 263 ~le~e~~~l~~~l~~l~~~ 281 (804)
.+..+.+.+..+..++...
T Consensus 101 kLrTd~eaL~dq~adLhgD 119 (389)
T KOG4687|consen 101 KLRTDREALLDQKADLHGD 119 (389)
T ss_pred hhhHHHHHHHHHHHHHhch
Confidence 3333333333333333333
No 352
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.48 E-value=1.1 Score=46.41 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
....+..++......|+-.|+||||||++|.
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3345666676667788899999999999984
No 353
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.47 E-value=1.1 Score=43.07 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=16.1
Q ss_pred CCeeEEeeccCCCCcceeecc
Q 003672 519 YKVCIFAYGQTGSGKTYTMMG 539 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~~G 539 (804)
..-.++.||++|+||||...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH
Confidence 344688999999999999743
No 354
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=80.39 E-value=1.1e+02 Score=34.56 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 003672 401 FEEKQRVAQELQE 413 (804)
Q Consensus 401 ~~~l~~~l~~l~~ 413 (804)
+.+++.+++....
T Consensus 375 l~~L~Re~~~~r~ 387 (458)
T COG3206 375 LRELEREAEAARS 387 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 355
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.38 E-value=22 Score=40.92 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=4.7
Q ss_pred cceEecCCC
Q 003672 462 ASIISYPTS 470 (804)
Q Consensus 462 ~~~~~~p~~ 470 (804)
...++|...
T Consensus 195 ~l~lsY~v~ 203 (525)
T TIGR02231 195 ELNLTYQVG 203 (525)
T ss_pred EEEEEEEeC
Confidence 355555544
No 356
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.04 E-value=0.84 Score=43.32 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=21.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcceeec
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTYTMM 538 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~t~~ 538 (804)
++..++.|.+ ++..|+||||||+.+.
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 5666667777 7789999999999874
No 357
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.52 E-value=1.4 Score=45.79 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.+...+......++.+|++|+|||+++
T Consensus 34 ~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 34 YLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 333334444567888999999999887
No 358
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=79.47 E-value=1.1 Score=47.63 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
...++..++.+. ..|+-.|+||||||++|
T Consensus 137 ~~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 137 QREAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 345667677664 45566699999999887
No 359
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.30 E-value=1.1e+02 Score=34.02 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=4.6
Q ss_pred CcEEEEEE
Q 003672 568 GWKFKMQA 575 (804)
Q Consensus 568 ~~~~~v~~ 575 (804)
+.-|.|.+
T Consensus 363 g~~~~v~v 370 (421)
T TIGR03794 363 GPPIEVFV 370 (421)
T ss_pred CCcEEEEE
Confidence 55566655
No 360
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.29 E-value=6 Score=42.98 Aligned_cols=7 Identities=29% Similarity=0.121 Sum_probs=2.8
Q ss_pred ccccccc
Q 003672 443 IRVFCRV 449 (804)
Q Consensus 443 i~~~~r~ 449 (804)
|.-+-|.
T Consensus 232 IerahR~ 238 (370)
T PF02994_consen 232 IERAHRS 238 (370)
T ss_dssp EEEEEEE
T ss_pred hhhhhcc
Confidence 4444443
No 361
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.27 E-value=1.2e+02 Score=34.56 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=10.2
Q ss_pred eCCC-CCChHHhHHHHHHHHHh
Q 003672 760 ISPD-SPSVGESLCSLRFAARV 780 (804)
Q Consensus 760 isp~-~~~~~etl~tL~fa~r~ 780 (804)
|.|+ .++..-..=+-..|.++
T Consensus 468 v~~~~v~d~~~~~la~~i~~~i 489 (514)
T TIGR03319 468 VKPEKISDDQAVVLARDIAKKI 489 (514)
T ss_pred ecCCcCChHHHHHHHHHHHHHH
Confidence 3465 33444444444555555
No 362
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=79.15 E-value=1.3 Score=50.90 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCeeEEeeccCCCCcceee--------ccCCCCccCCCch
Q 003672 519 YKVCIFAYGQTGSGKTYTM--------MGKPEAQEHKGLI 550 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~--------~G~~~~~~~~Gli 550 (804)
.|-.|+.+|+||||||+-+ ||.+..+ .+|+|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~-~~gmI 308 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSS-SPGMI 308 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCC-CCCee
Confidence 4667788899999999988 5655433 36775
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.13 E-value=0.67 Score=45.45 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcceee
Q 003672 522 CIFAYGQTGSGKTYTM 537 (804)
Q Consensus 522 ~v~~yG~t~sGKt~t~ 537 (804)
.|+..||||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 5788999999999998
No 364
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=79.10 E-value=1.6e+02 Score=35.78 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=13.1
Q ss_pred HhhhhhhhhhhcccccccccccC
Q 003672 429 RKKLHNTILELKGNIRVFCRVRP 451 (804)
Q Consensus 429 ~~~l~~~i~~Lk~~i~~~~r~r~ 451 (804)
...|.++-.+++.-|..+.+..|
T Consensus 1405 k~~Lnndk~di~qLi~~La~KsP 1427 (1439)
T PF12252_consen 1405 KTDLNNDKYDIDQLISKLAKKSP 1427 (1439)
T ss_pred HHhhccCcccHHHHHHHHHhCCh
Confidence 34455555555555666666666
No 365
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=78.79 E-value=1.1e+02 Score=33.91 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHH
Q 003672 394 SMETRAEFEEKQRVA 408 (804)
Q Consensus 394 ~~~~~~e~~~l~~~l 408 (804)
+..++.++...+..+
T Consensus 236 l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 236 IKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 366
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=78.71 E-value=2.1 Score=50.05 Aligned_cols=312 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 003672 127 HVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAI--ENHRIEKEARVAAEKL 204 (804)
Q Consensus 127 ~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~--~~~~~~~~~~~~~~~~ 204 (804)
+...+..|...++.+..+..+-..+ +..+..++..+..++......+.........+- ..+......+..++.+
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~----~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e 157 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQE----FKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEE 157 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003672 205 QASLSEQLEKAHQDIAAANQRAVSLD--DMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHN 282 (804)
Q Consensus 205 ~~~l~~el~~l~~el~~~~~~~~~l~--~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~ 282 (804)
...-...+..+...+..+...+..-- ......-.....-.....--...++.+...+..++.++......+..+...+
T Consensus 158 ~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i 237 (619)
T PF03999_consen 158 KERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKI 237 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 003672 283 NSLQEQLALSRASQDEA-TKQKDSLVNEVRCLRGELQQVRDDRDRQVAQV-QTLTAEIVKYQESTGKSLMELNSLTTKSK 360 (804)
Q Consensus 283 ~~l~~~l~~~~~~~~~l-~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~-~~l~~el~~l~~~~~~l~~el~~l~~~~~ 360 (804)
..|-..|..-....... ...-.--...+..++.++..+..-....-..+ .....+|.++-...--...+......-..
T Consensus 238 ~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~ 317 (619)
T PF03999_consen 238 EELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI 317 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHhhhhh
Q 003672 361 SLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAE------HQLIEGEKLRKKLHN 434 (804)
Q Consensus 361 ~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~------~~l~~~~~~~~~l~~ 434 (804)
..-. +.-+...+.++..++..... ...+-++..++..+-.+..++.....|-. ..+-..++.++.+.+
T Consensus 318 d~~~-----E~lL~~hE~Ei~~Lk~~~~~-~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~k 391 (619)
T PF03999_consen 318 DSYT-----EELLELHEEEIERLKEEYES-RKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQK 391 (619)
T ss_dssp ----------------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHHH
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHHH
Q ss_pred hhhhhccccccccc
Q 003672 435 TILELKGNIRVFCR 448 (804)
Q Consensus 435 ~i~~Lk~~i~~~~r 448 (804)
.+-.+...|...+.
T Consensus 392 ~lPkle~~L~~~l~ 405 (619)
T PF03999_consen 392 KLPKLEEELKKKLE 405 (619)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
No 367
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=78.63 E-value=3.4 Score=46.74 Aligned_cols=68 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred eccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcc---------------eeecc----CCCCccCCCch-
Q 003672 491 FDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKT---------------YTMMG----KPEAQEHKGLI- 550 (804)
Q Consensus 491 fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt---------------~t~~G----~~~~~~~~Gli- 550 (804)
|+.+|+.+..-..|..-+...+... ....-.++-.||+|+||| |++-| +|-..+-.|||
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p 153 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGL-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFD 153 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhc-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCC
Q ss_pred HHHHHHHHH
Q 003672 551 PRSLEQIFQ 559 (804)
Q Consensus 551 ~r~~~~lf~ 559 (804)
|.-...+|.
T Consensus 154 ~~~~~~~le 162 (644)
T PRK15455 154 PDEDGPILE 162 (644)
T ss_pred hhhhHHHHH
No 368
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=78.26 E-value=86 Score=32.21 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 233 YKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNN---SLQEQLALSRASQDEATKQKDSLVNE 309 (804)
Q Consensus 233 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~---~l~~~l~~~~~~~~~l~~~~~~l~~e 309 (804)
.+.++....+|..+++-.+++-.-+.....+--.+++.|...+.+|+..+- .....+...+.++.++..+...|+.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLK 388 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~ 388 (804)
+...+--......-...--..-..----+...-++..=++.++..|..++.-.+.....--+--+.++-++..+++.+.
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 369
>PRK12704 phosphodiesterase; Provisional
Probab=77.93 E-value=1.3e+02 Score=34.30 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003672 215 AHQDIAAANQRAVSLDDMYKR-LQEYNQSLQLYN-AKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALS 292 (804)
Q Consensus 215 l~~el~~~~~~~~~l~~~~~~-l~~~~~~l~~~~-~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~ 292 (804)
.+..+...+.+.+.+..+... .++.......+. .++......++.++...+.++...+..+..-...++.-...++..
T Consensus 29 a~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekk 108 (520)
T PRK12704 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 003672 293 RASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVK---YQESTGKSLMELNSLTTKSKSLEETCSSQ 369 (804)
Q Consensus 293 ~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~---l~~~~~~l~~el~~l~~~~~~le~~~~~~ 369 (804)
+..+...+..+.....+++..+.++..+..+......++..+..+-.. +..--.++..+...+-.++..--..-...
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 003672 370 REQ 372 (804)
Q Consensus 370 ~~~ 372 (804)
..+
T Consensus 189 ~a~ 191 (520)
T PRK12704 189 KAK 191 (520)
T ss_pred HHH
No 370
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.91 E-value=0.82 Score=41.42 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCeeEEeeccCCCCcceee
Q 003672 519 YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~ 537 (804)
....++-+|++|||||+++
T Consensus 1 ~~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCCEEEEECCCCCcHHHHH
No 371
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.75 E-value=0.8 Score=41.45 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003672 523 IFAYGQTGSGKTYTM 537 (804)
Q Consensus 523 v~~yG~t~sGKt~t~ 537 (804)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
No 372
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.25 E-value=31 Score=38.04 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003672 212 LEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLET-ANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLA 290 (804)
Q Consensus 212 l~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~-~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~ 290 (804)
+..+-.++.+++.++..+..+.+.+..+++.|+++...+...+.. +.....++..+...+..++..+...+..++.++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 003672 291 LS 292 (804)
Q Consensus 291 ~~ 292 (804)
..
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 373
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.16 E-value=1.2 Score=43.64 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
...|..++...+-.++..|+.||||||+|
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHH
No 374
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=77.07 E-value=1.1e+02 Score=32.85 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003672 205 QASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNS 284 (804)
Q Consensus 205 ~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~ 284 (804)
+..+...+..+..-.......+.+....+..-...-..++..... .=....-...-..+..++..+..-+......-..
T Consensus 74 ~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~ 152 (339)
T cd09238 74 LAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AWTRPPSATLTKNLWERLNRFRVNLEQAGDSDES 152 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 003672 285 LQEQLALSRASQDEATKQ-------------------KDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAE---IVKYQ 342 (804)
Q Consensus 285 l~~~l~~~~~~~~~l~~~-------------------~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~e---l~~l~ 342 (804)
+...+...+..+..+... ....-..+..+-.++..+..++..+...+...... ...+-
T Consensus 153 v~~k~~~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll 232 (339)
T cd09238 153 LRRRIEDAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVM 232 (339)
T ss_pred HHHHHHHHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHH
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003672 343 ESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQL 422 (804)
Q Consensus 343 ~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l 422 (804)
.........+..--.+...+...+......-..+-.++......+.. .........+-+..-..+...+..+.++...+
T Consensus 233 ~~~~~~e~lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~-~~~~~~~~~~re~~l~~L~~ay~~y~el~~~l 311 (339)
T cd09238 233 ATTGSYDALFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQ-IFDVEGWRAATESHATQIRAAVAKYRELREGM 311 (339)
T ss_pred HhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHHHHHHHHHHHch
Q ss_pred HHHHHHHhhhhhhhhhhccccccccccc
Q 003672 423 IEGEKLRKKLHNTILELKGNIRVFCRVR 450 (804)
Q Consensus 423 ~~~~~~~~~l~~~i~~Lk~~i~~~~r~r 450 (804)
.+...=...+...+..+...+..||.-|
T Consensus 312 ~eG~kFY~dL~~~~~~l~~~~~~fv~~R 339 (339)
T cd09238 312 EEGLRFYSGFQEAVRRLKQECEDFVMTR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 375
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.94 E-value=90 Score=31.78 Aligned_cols=231 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003672 174 REKVAKEESEKLDAIENHRIEKEARV-AAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKR-LQEYNQSLQLYNAKLQ 251 (804)
Q Consensus 174 ~~~l~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~-l~~~~~~l~~~~~~l~ 251 (804)
..+|..+......+...++.....+. .-+..+..+...+..+...+..-..+..+....+.. +...+..+...+...-
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 252 SDLET-ANEVNKRVEKEKLTIVENLSTLRGHNNS-LQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVA 329 (804)
Q Consensus 252 ~~l~~-~~~~l~~le~e~~~l~~~l~~l~~~~~~-l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~ 329 (804)
..... +...+..+...+..+...+......... +......+...+..+...++ .+...-...-..+...+.....
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~---~Er~~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFE---NERNEREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 003672 330 QVQT-LTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSS-QREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRV 407 (804)
Q Consensus 330 ~~~~-l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~-~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~ 407 (804)
.+.. +..+...-...+..+...++.+......-.+.... ...++..+...|..........+..+-.+...|-..-+.
T Consensus 161 ~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~ 240 (247)
T PF06705_consen 161 RLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQD 240 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 376
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.82 E-value=47 Score=28.47 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHhHHHHHHHHH
Q 003672 304 DSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQES---------------TGKSLMELNSLTTKSKSLEETCSS 368 (804)
Q Consensus 304 ~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~---------------~~~l~~el~~l~~~~~~le~~~~~ 368 (804)
.....++..+..++..+...+..+..++..+..-+.++..- ......-+..+...+..++..+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003672 369 QREQIRIMEIQLAAANEKLKMA 390 (804)
Q Consensus 369 ~~~~l~~l~~~l~~l~~~l~~~ 390 (804)
+...+..+..++..++..+...
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 377
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.63 E-value=28 Score=40.08 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003672 231 DMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTI-----------VENLSTLRGHNNSLQEQLALSRASQDEA 299 (804)
Q Consensus 231 ~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l-----------~~~l~~l~~~~~~l~~~l~~~~~~~~~l 299 (804)
..+..++.++..++.++..++.++..++..+.-++.-.... ...+..+..-...+..++..+...+.++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003672 300 TKQKDSLVNEVRCLRGELQQV 320 (804)
Q Consensus 300 ~~~~~~l~~el~~l~~el~~~ 320 (804)
..++..++.++..++.++..+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 378
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.61 E-value=38 Score=35.29 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHH
Q 003672 324 RDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLS-SMETRAEFE 402 (804)
Q Consensus 324 ~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~-~~~~~~e~~ 402 (804)
+...++++..+..+.+.++..-+++..-..+|...++.|+.+...++..++-|....++...+...++.- ..+......
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~ 299 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTA 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccc
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhccccccccc
Q 003672 403 EKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCR 448 (804)
Q Consensus 403 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r 448 (804)
-+-+.+-+.+..-...+..+..+.+..+.=.-.+...-..++.+.|
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHH
No 379
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=76.55 E-value=14 Score=41.10 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHhhhh----------------hhhhhhccccccccccc
Q 003672 389 MADLSSMETRAEFEEKQRVAQELQERLA--EAEHQLIEGEKLRKKLH----------------NTILELKGNIRVFCRVR 450 (804)
Q Consensus 389 ~~~~~~~~~~~e~~~l~~~l~~l~~~~~--~l~~~l~~~~~~~~~l~----------------~~i~~Lk~~i~~~~r~r 450 (804)
.+..++..++..++-+..+...+..+.. .+..++......++.+. .-|-.....-..++++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 134 (438)
T PTZ00361 55 KCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNIL 134 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEecc
Q ss_pred CCCCCCCCCCCcceEecCCCcccCCcc-------eeeecCCceeeEeeccccCCCCChhHHHHHHHHHHHHhhcC-----
Q 003672 451 PLLPDDGVGADASIISYPTSLESQGRG-------IDLIQNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDG----- 518 (804)
Q Consensus 451 ~~~~~e~~~~~~~~~~~p~~~~~~~~~-------i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G----- 518 (804)
+.+..+...+...+.....+...-+.. +..........-.|+.| ...+....++...|...+.-
T Consensus 135 ~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DI----gGl~~qi~~l~e~v~lpl~~p~~~~ 210 (438)
T PTZ00361 135 SFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADI----GGLEQQIQEIKEAVELPLTHPELYD 210 (438)
T ss_pred CcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHh----cCHHHHHHHHHHHHHhhhhCHHHHH
Q ss_pred -----CCeeEEeeccCCCCcceee
Q 003672 519 -----YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 519 -----~n~~v~~yG~t~sGKt~t~ 537 (804)
....|+.||++|+|||++.
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHH
No 380
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=76.42 E-value=1.1 Score=46.51 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCC---CeeEEeeccCCCCcceee
Q 003672 508 ISQLVQSALDGY---KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 508 ~~~~v~~~~~G~---n~~v~~yG~t~sGKt~t~ 537 (804)
+.+.+..++... .+.|+..|+||||||++|
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHH
No 381
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=76.42 E-value=0.98 Score=40.19 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=0.0
Q ss_pred eEEeeccCCCCccee
Q 003672 522 CIFAYGQTGSGKTYT 536 (804)
Q Consensus 522 ~v~~yG~t~sGKt~t 536 (804)
+|+-.|++|||||+.
T Consensus 1 vI~I~G~~gsGKST~ 15 (121)
T PF13207_consen 1 VIIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEECCCCCCHHHH
No 382
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.10 E-value=35 Score=26.54 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003672 218 DIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGH 281 (804)
Q Consensus 218 el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~ 281 (804)
++..+..++..+-....++...+..+..+...+..+-..+.+........++.+-..+..++..
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQH 64 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
No 383
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=75.74 E-value=22 Score=39.29 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 261 NKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQ 330 (804)
Q Consensus 261 l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~ 330 (804)
+.+...-+.....++.+++.+..+++.+++++...++++++.+...+.++..++.++++.+....++.+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 384
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.64 E-value=2.1 Score=44.01 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHH-HHHHHHHhhcC-CCeeEEeeccCCCCccee
Q 003672 495 FNHEASQQDVFLE-ISQLVQSALDG-YKVCIFAYGQTGSGKTYT 536 (804)
Q Consensus 495 f~~~~~q~~vf~~-~~~~v~~~~~G-~n~~v~~yG~t~sGKt~t 536 (804)
|-|-.-.+.++.+ +-.++...+.+ ----.+-|||.|+|||.|
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSt 73 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTST 73 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHH
No 385
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.61 E-value=52 Score=28.39 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 003672 219 IAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLET----------------------ANEVNKRVEKEKLTIVENLS 276 (804)
Q Consensus 219 l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~----------------------~~~~l~~le~e~~~l~~~l~ 276 (804)
+.....++..++..+..+...+..+...+.+...-+.. ..+....++..+..+...+.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 003672 277 TLRGHNNSLQEQLALSRASQDEATK 301 (804)
Q Consensus 277 ~l~~~~~~l~~~l~~~~~~~~~l~~ 301 (804)
.+...+..+..++..++..+.++.+
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 386
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=75.61 E-value=1.7 Score=49.33 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCC--eeEEeeccCCCCcceee
Q 003672 506 LEISQLVQSALDGYK--VCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 506 ~~~~~~v~~~~~G~n--~~v~~yG~t~sGKt~t~ 537 (804)
.+|...++..+.|.. -.++.+||+|||||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
No 387
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=75.60 E-value=0.89 Score=50.37 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 003672 127 HVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV-AAEKLQ 205 (804)
Q Consensus 127 ~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~-~~~~~~ 205 (804)
|+.||..|++.|....+++++.|.+|..+.++....+.+.+..+++-++.|...+.++..-...+....-.++ ++..+.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~ 453 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREH 453 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 206 ASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLY 246 (804)
Q Consensus 206 ~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~ 246 (804)
.+++.-++.-+.-|+.-+.+|..+.....+|...+..|++.
T Consensus 454 ~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 454 AEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp -----------------------------------------
T ss_pred HHHhcccccchHHHHHhhhhccccccccccccccccccccC
No 388
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=75.44 E-value=67 Score=29.55 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---------------------------------
Q 003672 251 QSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQD--------------------------------- 297 (804)
Q Consensus 251 ~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~--------------------------------- 297 (804)
..+++.+...+..++.+++.+..++..+...+.+++.-++.++.-..
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003672 298 ------EATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLM 350 (804)
Q Consensus 298 ------~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~ 350 (804)
.....++.++++++.+...+..+...+..+...+..+...+..+.........
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=75.32 E-value=1.7 Score=45.73 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 506 LEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 506 ~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.....++..++. ....|+-.|+||||||++|
T Consensus 119 ~~~~~~L~~~v~-~~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 119 AAQRDVLREAVL-ARKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHHHH-cCCeEEEECCCCCCHHHHH
No 390
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=75.16 E-value=1.2e+02 Score=32.30 Aligned_cols=142 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 003672 258 NEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQT---L 334 (804)
Q Consensus 258 ~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~---l 334 (804)
...+...+..+.....++..+.......+-........+..+..++..+...+...+..+...+.+++..+.-.+. -
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhHHHHHHHH
Q 003672 335 TAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEI-----QLAAANEKLKMADLSSMETRAEFE 402 (804)
Q Consensus 335 ~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~-----~l~~l~~~l~~~~~~~~~~~~e~~ 402 (804)
..++...+..+...+.++..+...+. ..+...+..+..+.. ++...+.++..+...+..++..+.
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 391
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.14 E-value=54 Score=28.31 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHhHHHHHHHHH
Q 003672 304 DSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQES---------------TGKSLMELNSLTTKSKSLEETCSS 368 (804)
Q Consensus 304 ~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~---------------~~~l~~el~~l~~~~~~le~~~~~ 368 (804)
..+...+..++.++..+...+..+..++.+...-+.++..- ......-...+..++..++..+..
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003672 369 QREQIRIMEIQLAAANEKLKMA 390 (804)
Q Consensus 369 ~~~~l~~l~~~l~~l~~~l~~~ 390 (804)
+..++..++.++..++.++..+
T Consensus 82 l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 392
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=75.14 E-value=99 Score=31.33 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 200 AAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLR 279 (804)
Q Consensus 200 ~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~ 279 (804)
.+......+......+...+..+....................+...............................+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 280 GHNNSLQEQLALSRASQDEATKQKDSLV---------------------NEVRCLRGELQQVRDDRDRQVAQVQTLTAEI 338 (804)
Q Consensus 280 ~~~~~l~~~l~~~~~~~~~l~~~~~~l~---------------------~el~~l~~el~~~~~~~~~l~~~~~~l~~el 338 (804)
..+..+...+.........+...-.... .-....+.-..+......+....+.......
T Consensus 81 ~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~~~~~ 160 (262)
T smart00283 81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 339 VKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 339 ~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
......+......+.............+......+..+...+..+..................+.+.....+......+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 240 (262)
T smart00283 161 NEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHhhhhhhhhhhc
Q 003672 419 EHQLIEGEKLRKKLHNTILELK 440 (804)
Q Consensus 419 ~~~l~~~~~~~~~l~~~i~~Lk 440 (804)
......+......|...+..++
T Consensus 241 ~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 241 SAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
No 393
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=75.03 E-value=1.8 Score=42.02 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 506 LEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 506 ~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.++.+++..++.. ...++-.|++|||||++|
T Consensus 12 ~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 12 PLQAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCCCCHHHHH
No 394
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=74.98 E-value=6 Score=42.00 Aligned_cols=64 Identities=27% Similarity=0.556 Sum_probs=0.0
Q ss_pred ec-cccCCCCChhHHHHHHHHHHHHhhcCCCe---eEEeeccCCCCcc---------------eeeccCCCCccCCCchH
Q 003672 491 FD-KVFNHEASQQDVFLEISQLVQSALDGYKV---CIFAYGQTGSGKT---------------YTMMGKPEAQEHKGLIP 551 (804)
Q Consensus 491 fd-~vf~~~~~q~~vf~~~~~~v~~~~~G~n~---~v~~yG~t~sGKt---------------~t~~G~~~~~~~~Gli~ 551 (804)
|+ .+|+ .++.-..+-..+.++-.|... .++-.||.|+||| ||+.|.|-..+-.+|||
T Consensus 59 f~~~~~G----~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 59 FEDEFYG----MEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred ccccccC----cHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCC
Q ss_pred HHHHHHH
Q 003672 552 RSLEQIF 558 (804)
Q Consensus 552 r~~~~lf 558 (804)
.-+.+.|
T Consensus 135 ~~~r~~~ 141 (358)
T PF08298_consen 135 KELRREF 141 (358)
T ss_pred HhHHHHH
No 395
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.96 E-value=27 Score=38.66 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003672 301 KQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQ 372 (804)
Q Consensus 301 ~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~ 372 (804)
+-+.++..-.+....++.+++..++++..+++++...+++++..+...+.++..|+..+.+.+...+++.++
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 396
>PRK04406 hypothetical protein; Provisional
Probab=74.96 E-value=27 Score=28.14 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 363 EETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 363 e~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
+..+..+..++..|+.++.-.+.-+..++..+.+...+++.+...+..+..++.++
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 397
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=74.89 E-value=2.8 Score=44.02 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCcceEecCCCcccCCcceeeecCCceeeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccC
Q 003672 450 RPLLPDDGVGADASIISYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQT 529 (804)
Q Consensus 450 r~~~~~e~~~~~~~~~~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t 529 (804)
+|+..-.-..+.+.....|.-... +..+.+-+..+ ..+..+......+=..+....+..+|... +.|+-.|.|
T Consensus 110 ~P~~darLpdGsRvna~~pPva~d-Gp~lsIRKf~k-~~ltl~dli~~gt~~~~~a~~L~~av~~r-----~NILisGGT 182 (355)
T COG4962 110 QPIVDARLPDGSRLNANSPPVAID-GPTLSIRKFPK-IKLTLLDLIIFGTMIRRAAKFLRRAVGIR-----CNILISGGT 182 (355)
T ss_pred CceeeeeCCCCceEEeecCccccC-CCccccccccc-ccccHHHHHHcCCcCHHHHHHHHHHHhhc-----eeEEEeCCC
Q ss_pred CCCcceee
Q 003672 530 GSGKTYTM 537 (804)
Q Consensus 530 ~sGKt~t~ 537 (804)
|||||+++
T Consensus 183 GSGKTTlL 190 (355)
T COG4962 183 GSGKTTLL 190 (355)
T ss_pred CCCHHHHH
No 398
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=74.76 E-value=61 Score=28.71 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH--------------------HHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEE--------------------TCSSQ 369 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~--------------------~~~~~ 369 (804)
++-++..+...+.++.....++..+...+.....-+.....+++.....+.+.+. ++..+
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a 82 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRA 82 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003672 370 REQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLI 423 (804)
Q Consensus 370 ~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~ 423 (804)
...+..-+.++...+.++..+...+...+.-+.....+...-.....+.+.++.
T Consensus 83 ~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 83 QKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 399
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=74.75 E-value=90 Score=30.69 Aligned_cols=122 Identities=8% Similarity=0.101 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCcccccccHHHHHHHhccccC--cchhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHH
Q 003672 58 QDVSAASDMASTEGSDCGTIEFTKEEVEALLNEKPK--TKKFDLKAKIEQMTEHNKRFKLCIKWF---QQVDENHVLEKQ 132 (804)
Q Consensus 58 ~~~~~~~~~~~g~~~~~~~~~~~~eev~~ll~e~~~--~~k~~~k~k~e~l~~~l~~l~~~i~~l---~~~~~~~~~e~~ 132 (804)
+..+|+|+++|.+++-..+. -+..-.. ......++++..+.-+-+-.+..++.. +...+...+..+
T Consensus 23 q~at~~g~p~g~s~~~~~~~---------~~~~~~~aas~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~ 93 (292)
T KOG4005|consen 23 QSATPSGSPTGSSSGYASSS---------NMDDDNMAASQPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARME 93 (292)
T ss_pred CCCcccCCCCCCCccccCcc---------ccCCCcccccchHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 133 KIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHR 192 (804)
Q Consensus 133 ~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~ 192 (804)
++..++..|..+-+.+..+ .+.|...-..+-.+..++...++.+..++..+.....
T Consensus 94 eme~~i~dL~een~~L~~e----n~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNE----NDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=74.64 E-value=2.6 Score=43.98 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHhhcCCCe---------eEEeeccCCCCcceee
Q 003672 499 ASQQDVFLEISQLVQSALDGYKV---------CIFAYGQTGSGKTYTM 537 (804)
Q Consensus 499 ~~q~~vf~~~~~~v~~~~~G~n~---------~v~~yG~t~sGKt~t~ 537 (804)
.+..++...+...+...+..... .|+-.|+||+|||+|+
T Consensus 164 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 164 ADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHH
No 401
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.63 E-value=63 Score=28.81 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 003672 318 QQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEE---------------TCSSQREQIRIMEIQLAA 382 (804)
Q Consensus 318 ~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~---------------~~~~~~~~l~~l~~~l~~ 382 (804)
..+..++...-.+++.++.++..+......+..++.....-+.++.. -.....+-...+..+++.
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ 82 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKEL 82 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003672 383 ANEKLKMADLSSMETRAEFEEKQRVAQELQER 414 (804)
Q Consensus 383 l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~ 414 (804)
+..++..++.....++..+.+++..+.++...
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 402
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=71 Score=29.42 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 003672 293 RASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIV--------------------------------- 339 (804)
Q Consensus 293 ~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~--------------------------------- 339 (804)
..++.++..++..++.+++.++.++..+...+.++..-++.++.--.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ------HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003672 340 ------KYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLS 393 (804)
Q Consensus 340 ------~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~ 393 (804)
.+.+.++-+...++.+...+..++..+..+...+..+...+..+..+.......
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~~ 144 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQKK 144 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 403
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.58 E-value=1.2e+02 Score=31.84 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 003672 252 SDLETANEVNKRVEKEKLTIVENLS-----TLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDR-- 324 (804)
Q Consensus 252 ~~l~~~~~~l~~le~e~~~l~~~l~-----~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~-- 324 (804)
+..+..+++-..+-..++++...+. ++...+..+...|...+..+.++..+++.++..+..+...+..-....
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~ 120 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENG 120 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcch
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003672 325 --DRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFE 402 (804)
Q Consensus 325 --~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~ 402 (804)
...-..+......+..+..++...+..++....+.......+..+..+.-.+-..........-..-........+|.
T Consensus 121 ~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~~g~~~ef~ 200 (301)
T PF06120_consen 121 YIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGMNGAHAEFN 200 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q ss_pred HH
Q 003672 403 EK 404 (804)
Q Consensus 403 ~l 404 (804)
.+
T Consensus 201 ~l 202 (301)
T PF06120_consen 201 RL 202 (301)
T ss_pred HH
No 404
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.57 E-value=2.7 Score=45.83 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHHHhh--------cCCCeeEEeeccCCCCcceee
Q 003672 495 FNHEASQQDVFLEISQLVQSAL--------DGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 495 f~~~~~q~~vf~~~~~~v~~~~--------~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.+.......++..+...+...+ ......|+.+|+||+|||+|+
T Consensus 141 ~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 141 LSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTI 191 (388)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHH
No 405
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=74.39 E-value=1 Score=40.57 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003672 523 IFAYGQTGSGKTYTM 537 (804)
Q Consensus 523 v~~yG~t~sGKt~t~ 537 (804)
|+-||+.|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
No 406
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.30 E-value=97 Score=34.63 Aligned_cols=125 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 106 MTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKL 185 (804)
Q Consensus 106 l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~ 185 (804)
|-.++..|-..-.++-+....+.--...|-.++++|..+..-|..+ +...+.....++.++.+++++|.+++++..
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgE----lea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGE----LEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 186 DAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYK 234 (804)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~ 234 (804)
.+..++......-.-......--..++.++--+..+++.++-++++.+.
T Consensus 375 ~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 375 DARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 407
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.28 E-value=37 Score=26.03 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 256 TANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGE 316 (804)
Q Consensus 256 ~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~e 316 (804)
.+...++.--.-...+.+++...+...-.+...|........++..++..+..+++.++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 408
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=74.19 E-value=1.8 Score=46.33 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 506 LEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 506 ~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
..+..++..++.+. ..|+..|+||||||++|
T Consensus 147 ~~~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 147 KKIKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHHHcC-CcEEEECCCCCCHHHHH
No 409
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.15 E-value=51 Score=28.59 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 245 LYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRG---HNNSLQEQLALSRASQDEATKQKDSLVNEVRCL 313 (804)
Q Consensus 245 ~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~---~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l 313 (804)
.++-.+-.+...+..+++.+..+...+..++..+.. ....+..+...++.++..++.++..+..++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.06 E-value=1.1 Score=45.23 Aligned_cols=15 Identities=53% Similarity=0.842 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003672 523 IFAYGQTGSGKTYTM 537 (804)
Q Consensus 523 v~~yG~t~sGKt~t~ 537 (804)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
No 411
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.97 E-value=79 Score=29.65 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 161 GTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYN 240 (804)
Q Consensus 161 ~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~ 240 (804)
..++.+-........++..++.+...+..++...+......+..+..+. +.++.+...+..++..++...+.+....
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003672 241 QSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNN 283 (804)
Q Consensus 241 ~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~ 283 (804)
..+......+...-..+......+.....++...+.+.-.+..
T Consensus 113 ~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 113 KNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.87 E-value=1.7e+02 Score=33.45 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003672 213 EKAHQDIAAANQRAVSLDDMYKR-LQEYNQSLQLYN-AKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLA 290 (804)
Q Consensus 213 ~~l~~el~~~~~~~~~l~~~~~~-l~~~~~~l~~~~-~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~ 290 (804)
...+..+...+.+.+.+..+... .++.......+. .++......++.++...+.++...+..+..-...++.-...+.
T Consensus 21 ~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Le 100 (514)
T TIGR03319 21 RIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLD 100 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003672 291 LSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVK---YQESTGKSLMELNSLTTKSKSLEETCS 367 (804)
Q Consensus 291 ~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~---l~~~~~~l~~el~~l~~~~~~le~~~~ 367 (804)
..+..+...+..+.....+++.+..++..+..+......++..+..+-.. +..-..++..+...+-.++..--..-.
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 180 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEA 180 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 003672 368 SQREQ 372 (804)
Q Consensus 368 ~~~~~ 372 (804)
....+
T Consensus 181 ~~~a~ 185 (514)
T TIGR03319 181 DKKAK 185 (514)
T ss_pred HHHHH
No 413
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.84 E-value=87 Score=30.07 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 241 QSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQV 320 (804)
Q Consensus 241 ~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~ 320 (804)
+.+=.....-...+...+-....++.++..+...|..-+.+...|+.++.-.+.+.......-.....+...|..+....
T Consensus 87 E~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003672 321 RDDRDRQVAQVQTLTAEIV 339 (804)
Q Consensus 321 ~~~~~~l~~~~~~l~~el~ 339 (804)
+.++..+..++..|+...+
T Consensus 167 qaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHhc
No 414
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.75 E-value=1.6e+02 Score=33.02 Aligned_cols=169 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003672 221 AANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEAT 300 (804)
Q Consensus 221 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 300 (804)
....+..........+...+......+..+............++.............+......++.+-......+..++
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~ 105 (475)
T PRK10361 26 QHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMI 105 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003672 301 KQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQL 380 (804)
Q Consensus 301 ~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l 380 (804)
...+.+..+.+.+-.++-+-+.+.-. ......+..-+.-+++.+...+..+++....-..-...+...-..+.++..++
T Consensus 106 ~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 106 NSEQRLSEQFENLANRIFEHSNRRVD-EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 003672 381 AAANEKLKMA 390 (804)
Q Consensus 381 ~~l~~~l~~~ 390 (804)
..--..+..+
T Consensus 185 ~~ea~nLt~A 194 (475)
T PRK10361 185 AQEAINLTRA 194 (475)
T ss_pred HHHHHHHHHH
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=73.64 E-value=1.9 Score=46.22 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 506 LEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 506 ~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
..+..++..++. ....|+..|+||||||++|
T Consensus 149 ~~~~~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 149 GDLEAFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHHHH-cCCeEEEECCCCccHHHHH
No 416
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=73.61 E-value=1.9 Score=45.65 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 507 EISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 507 ~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
+...++..++.+.. .|+-.|+||||||++|
T Consensus 132 ~~~~~L~~~v~~~~-nilI~G~tGSGKTTll 161 (323)
T PRK13833 132 AQASVIRSAIDSRL-NIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHHHcCC-eEEEECCCCCCHHHHH
No 417
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.50 E-value=92 Score=30.23 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 265 EKEKLTIVENLSTLR------GHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEI 338 (804)
Q Consensus 265 e~e~~~l~~~l~~l~------~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el 338 (804)
......+...+..++ .-+..--.++-.++.....+......+..++.....+...+...+..++..+..++...
T Consensus 68 ~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 68 RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003672 339 VKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIM 376 (804)
Q Consensus 339 ~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l 376 (804)
..+.........++..+......+.+.+...+-+....
T Consensus 148 ~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 148 AKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=73.12 E-value=2 Score=45.59 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcCCCee--EEeeccCCCCcceee
Q 003672 495 FNHEASQQDVFLEISQLVQSALDGYKVC--IFAYGQTGSGKTYTM 537 (804)
Q Consensus 495 f~~~~~q~~vf~~~~~~v~~~~~G~n~~--v~~yG~t~sGKt~t~ 537 (804)
|+.=..|+++...+..++.....+.... ++-||+.|+|||+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 419
>PF13479 AAA_24: AAA domain
Probab=73.11 E-value=1.5 Score=43.81 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCeeEEeeccCCCCcceee
Q 003672 519 YKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 519 ~n~~v~~yG~t~sGKt~t~ 537 (804)
.+..++.||++|+|||++.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a 20 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLA 20 (213)
T ss_pred CceEEEEECCCCCCHHHHH
No 420
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=72.86 E-value=1.4e+02 Score=31.88 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 003672 160 NGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKR---L 236 (804)
Q Consensus 160 ~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~---l 236 (804)
...+...+..+.....++..+.................+..+..++..+...+...+..+...+..+...+..++. -
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 003672 237 QEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRG-----HNNSLQEQLALSRASQDEATKQKD 304 (804)
Q Consensus 237 ~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~-----~~~~l~~~l~~~~~~~~~l~~~~~ 304 (804)
.......+..+..++.++..+...+. ..+......+..+.. ++...+.++...+..+......+.
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 421
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.58 E-value=65 Score=28.10 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Q 003672 218 DIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLET----------------------ANEVNKRVEKEKLTIVENL 275 (804)
Q Consensus 218 el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~----------------------~~~~l~~le~e~~~l~~~l 275 (804)
++...-..+..++.++..+...+..++..+.+...-++. ..+.+..+...++.+...+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 003672 276 STLRGHNNSLQEQLALSRASQDEA 299 (804)
Q Consensus 276 ~~l~~~~~~l~~~l~~~~~~~~~l 299 (804)
..+..+...++.++..++..+.++
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 422
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.48 E-value=77 Score=28.90 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 003672 270 TIVENLSTLRGHNNS-LQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQEST-GK 347 (804)
Q Consensus 270 ~l~~~l~~l~~~~~~-l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~-~~ 347 (804)
.+..++......... ...+..........+......+..+...+.................+..++.....+..+. ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003672 348 SLMELNSLTTKSKSLEETCSSQREQIRIM 376 (804)
Q Consensus 348 l~~el~~l~~~~~~le~~~~~~~~~l~~l 376 (804)
.+.+++.|..=+..+...+..++.++..+
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 423
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=72.39 E-value=2.4 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcce
Q 003672 509 SQLVQSALDGYKVCIFAYGQTGSGKTY 535 (804)
Q Consensus 509 ~~~v~~~~~G~n~~v~~yG~t~sGKt~ 535 (804)
..+++.++ .+-.|++.|+.|||||+
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~ 34 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTF 34 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTH
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHH
No 424
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=72.36 E-value=1.4 Score=45.17 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=0.0
Q ss_pred eeEEeeccCCCCcceee
Q 003672 521 VCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t~ 537 (804)
+....||||||||++.+
T Consensus 88 ~I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLL 104 (369)
T ss_pred eEEEEECCCCCCHHHHH
No 425
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=72.30 E-value=19 Score=42.29 Aligned_cols=316 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 003672 106 MTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLR--QENAHLREKVAKEESE 183 (804)
Q Consensus 106 l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~--~~~~~l~~~l~~~~~e 183 (804)
+.+.+..+...+..+.........++..+..++..+-.++...... +......-..+- ..+..+...+..++.+
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~----~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e 157 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLC----LNPFDIDESDLPSLEELEELRQHLQRLQEE 157 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC----CccccCCCCCCCcHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 184 KLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAA----------ANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSD 253 (804)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~----------~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 253 (804)
+..-...+......+..+-..+..--. .......+.. ....+..+...+..+..........+..+...
T Consensus 158 ~~~R~~~v~~l~~~I~~l~~~L~~~~~-~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~ 236 (619)
T PF03999_consen 158 KERRLEEVRELREEIISLMEELGIDPE-RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREK 236 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc-cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 254 LETANEVNKRVEKEKLTIVENLSTLR-GHNNSLQEQLALSRA-SQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQV 331 (804)
Q Consensus 254 l~~~~~~l~~le~e~~~l~~~l~~l~-~~~~~l~~~l~~~~~-~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~ 331 (804)
+..+-..+..-..+.......-..+. ..+..++.++..+.. ..+.+..-+.....+|..+-..+.-...++.....-.
T Consensus 237 i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~ 316 (619)
T PF03999_consen 237 IEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFY 316 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 003672 332 QTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIM--EIQLAAANEKLKMADLSSMETRAEFEEKQRVAQ 409 (804)
Q Consensus 332 ~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l--~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~ 409 (804)
..... +.-+...+.++..|+........-+.....-..-. ...++.....-.++..+-..+-.+-..-+.-..
T Consensus 317 ~d~~~-----E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~k 391 (619)
T PF03999_consen 317 IDSYT-----EELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQK 391 (619)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHHH
T ss_pred cccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHhh
Q 003672 410 ELQERLAEAEHQLIEGEKLRKK 431 (804)
Q Consensus 410 ~l~~~~~~l~~~l~~~~~~~~~ 431 (804)
.+=....++...+...+.....
T Consensus 392 ~lPkle~~L~~~l~~wE~e~g~ 413 (619)
T PF03999_consen 392 KLPKLEEELKKKLEEWEEEHGK 413 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HhhHHHHHHHHHHHHHHHHcCC
No 426
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=72.27 E-value=66 Score=28.04 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003672 304 DSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQ-----ESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEI 378 (804)
Q Consensus 304 ~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~-----~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~ 378 (804)
+.....+......+......+..+......+...+.... ..+.....-+..+...+..+...+..+...+.....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 003672 379 QLAAANEKLKMADLSSMETRAEFEEKQRVAQELQ 412 (804)
Q Consensus 379 ~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~ 412 (804)
.+.....+...++.-.......+.....+.+...
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~ 114 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQKE 114 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=72.13 E-value=4.7 Score=39.96 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHHHhhc--CCCeeEEeeccCCCCcce
Q 003672 495 FNHEASQQDVFLEISQLVQSALD--GYKVCIFAYGQTGSGKTY 535 (804)
Q Consensus 495 f~~~~~q~~vf~~~~~~v~~~~~--G~n~~v~~yG~t~sGKt~ 535 (804)
|++=..|+.+-.....++..+.. ..=..++-|||.|.|||+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhH
No 428
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.10 E-value=78 Score=28.78 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 251 QSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQ 330 (804)
Q Consensus 251 ~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~ 330 (804)
...+......-..++....+..+.+......+.+....|..++..+..+..-.. ++++.++..++....++..+...
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~R---kEv~~vRkkID~vNreLkpl~~~ 106 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMR---KEVEMVRKKIDSVNRELKPLGQS 106 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHH
Q 003672 331 VQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQ-IRIMEIQLA 381 (804)
Q Consensus 331 ~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~-l~~l~~~l~ 381 (804)
+...+.++.......++...+...|-..+..|-.+-..++-. +++|...+.
T Consensus 107 cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ie 158 (159)
T PF04949_consen 107 CQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIE 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 429
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.94 E-value=53 Score=26.75 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003672 312 CLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMAD 391 (804)
Q Consensus 312 ~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~ 391 (804)
.+..-++.++.+.+.+..+.......-.+++..+.....++..++..+-.|+.....++... ++++..++.++...+
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Q ss_pred hh
Q 003672 392 LS 393 (804)
Q Consensus 392 ~~ 393 (804)
..
T Consensus 78 ~~ 79 (79)
T PF08581_consen 78 RQ 79 (79)
T ss_dssp T-
T ss_pred CC
No 430
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.92 E-value=47 Score=28.78 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003672 308 NEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQE---STGKSLMELNSLTTKSKSLEETCSSQREQIRIM 376 (804)
Q Consensus 308 ~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~---~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l 376 (804)
.++-.+..+...+..+++.++.+...+..++..... ....+..+...+..++..++.++..+..++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=71.68 E-value=1.4 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred eEEeeccCCCCcceee
Q 003672 522 CIFAYGQTGSGKTYTM 537 (804)
Q Consensus 522 ~v~~yG~t~sGKt~t~ 537 (804)
..+-+|++|||||+.|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
No 432
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.37 E-value=1.9 Score=43.30 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHhh-cCCCeeEEeeccCCCCcceee
Q 003672 505 FLEISQ-LVQSAL-DGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 505 f~~~~~-~v~~~~-~G~n~~v~~yG~t~sGKt~t~ 537 (804)
|+.+.+ +|...+ +|+..-|+|.|.||.|||+.|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHH
No 433
>PRK04406 hypothetical protein; Provisional
Probab=71.35 E-value=41 Score=27.06 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 265 EKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQV 320 (804)
Q Consensus 265 e~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~ 320 (804)
++.+..+...+..|+.++.-.+.-++.+...+...+.++..+..++..+...+...
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 434
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=71.26 E-value=57 Score=29.79 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 310 VRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKM 389 (804)
Q Consensus 310 l~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~ 389 (804)
+..+..-........-.........+.+-....-........++.........+..+-.....+....+.+..+.+++.+
T Consensus 4 l~~l~~~vkk~a~~~p~~ess~ee~~ve~~~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eeler 83 (157)
T COG3352 4 LDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELER 83 (157)
T ss_pred hHHHHHHHHHHHHhcchhhhhhhhHhHHHhhcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhhhhhhhhhhcccccccccccCCCC
Q 003672 390 ADLSSMETRAEFEEKQRVAQELQERLAEAEHQ-LIEGEKLRKKLHNTILELKGNIRVFCRVRPLLP 454 (804)
Q Consensus 390 ~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~-l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r~~~~ 454 (804)
++..+..+...++.+.+.+.-+..++.....- +.++...+..+...+......++.+.-..|..+
T Consensus 84 Le~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~~d~d~ 149 (157)
T COG3352 84 LEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGVPDIDQ 149 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCcHHH
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.07 E-value=1.7e+02 Score=35.51 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 120 FQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV 199 (804)
Q Consensus 120 l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~ 199 (804)
+......+..+-..+..-++.++.+..+++.+ ..+++....+++.....++.+.++++.++.....+..+.
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~----~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~----- 574 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQK----AEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE----- 574 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 200 AAEKLQASLSEQLEKAHQDIAA------ANQRAVSLDDMYKRLQEYNQSLQL 245 (804)
Q Consensus 200 ~~~~~~~~l~~el~~l~~el~~------~~~~~~~l~~~~~~l~~~~~~l~~ 245 (804)
+++.+.....+.+.+-.++.. .........+....+......+..
T Consensus 575 -a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 575 -AQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 436
>PRK06547 hypothetical protein; Provisional
Probab=70.80 E-value=2.9 Score=39.97 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCeeEEeeccCCCCccee
Q 003672 508 ISQLVQSALDGYKVCIFAYGQTGSGKTYT 536 (804)
Q Consensus 508 ~~~~v~~~~~G~n~~v~~yG~t~sGKt~t 536 (804)
++.++..+..+.-.-|+.+|++|||||+.
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~ 31 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTL 31 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHH
No 437
>PRK04195 replication factor C large subunit; Provisional
Probab=70.66 E-value=3.1 Score=47.23 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHhhcCC-CeeEEeeccCCCCcceee
Q 003672 500 SQQDVFLEISQLVQSALDGY-KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 500 ~q~~vf~~~~~~v~~~~~G~-n~~v~~yG~t~sGKt~t~ 537 (804)
.+..+-..+..++.....|. .-.++.||+.|+|||++.
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 438
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=1.8 Score=44.55 Aligned_cols=16 Identities=56% Similarity=0.719 Sum_probs=0.0
Q ss_pred CeeEEeeccCCCCcce
Q 003672 520 KVCIFAYGQTGSGKTY 535 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~ 535 (804)
.+-|+..||||||||+
T Consensus 97 KSNILLiGPTGsGKTl 112 (408)
T COG1219 97 KSNILLIGPTGSGKTL 112 (408)
T ss_pred eccEEEECCCCCcHHH
No 439
>PF12846 AAA_10: AAA-like domain
Probab=70.53 E-value=1.5 Score=46.14 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=0.0
Q ss_pred CeeEEeeccCCCCcceee
Q 003672 520 KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 520 n~~v~~yG~t~sGKt~t~ 537 (804)
|..++.+|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
No 440
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.48 E-value=63 Score=35.73 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 191 HRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKR-LQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKL 269 (804)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~-l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~ 269 (804)
+..+..+..+++.++..+..+-+.++.+.+.+.++...+..++.. +.....++..+...++.++..+...+..+..++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 003672 270 TI 271 (804)
Q Consensus 270 ~l 271 (804)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 441
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=70.46 E-value=65 Score=33.22 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 237 QEYNQSLQL-YNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRG 315 (804)
Q Consensus 237 ~~~~~~l~~-~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~ 315 (804)
+..+.++.. .+.+++......--...++..+...+.-+...|+..+.++..+|.....+..++.++++.+..-+..|+.
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003672 316 ELQQVRDDRDRQVAQVQT 333 (804)
Q Consensus 316 el~~~~~~~~~l~~~~~~ 333 (804)
...+++..+.+-.+-++.
T Consensus 190 ~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.40 E-value=1.3e+02 Score=36.32 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003672 138 LESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV-AAEKLQASLSEQLEKAH 216 (804)
Q Consensus 138 l~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~l~~el~~l~ 216 (804)
++..+.-+.+...++..-++.++....+++.....++....+++..+..+....+..+++.. .+++...+.+..+...+
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 217 QDIAAANQRAVSLDDMYKRLQEYNQSLQL 245 (804)
Q Consensus 217 ~el~~~~~~~~~l~~~~~~l~~~~~~l~~ 245 (804)
.+.+.+-.++...........+....+..
T Consensus 579 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 579 KEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
No 443
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.10 E-value=1.3e+02 Score=36.28 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 120 FQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV 199 (804)
Q Consensus 120 l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~ 199 (804)
++.....+......+..-|+.++.+..+++.+ ..++.....+++.....++.+.++++.++.....+..+.
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~----~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~e----- 569 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQK----NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKE----- 569 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 200 AAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQE 238 (804)
Q Consensus 200 ~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~ 238 (804)
+++.+.....+.+.+-.++..............+.+..
T Consensus 570 -a~~~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 570 -AQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
No 444
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=69.96 E-value=1.9 Score=41.30 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=0.0
Q ss_pred eeEEeeccCCCCccee
Q 003672 521 VCIFAYGQTGSGKTYT 536 (804)
Q Consensus 521 ~~v~~yG~t~sGKt~t 536 (804)
+.++-+||||+|||++
T Consensus 4 ~~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
No 445
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.80 E-value=48 Score=25.43 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 158 ELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQD 218 (804)
Q Consensus 158 el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~e 218 (804)
+++..++.--.....+.++|.+.+.....+...+.........+..++..|..+++.++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 446
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.79 E-value=1.3e+02 Score=30.54 Aligned_cols=224 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 003672 135 QSALESTEKKLSDTEMEMKN----RESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV--AAEKLQASL 208 (804)
Q Consensus 135 ~~el~~l~~~~~ele~~l~~----~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~l 208 (804)
+..|..+..++..+...|.. ....-...+..+...+..|+..+........+....+...-+... -...-...+
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 003672 209 SEQLEKAHQDIAAANQRAVSLDDMYKR-LQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLS-TLRGHNNSLQ 286 (804)
Q Consensus 209 ~~el~~l~~el~~~~~~~~~l~~~~~~-l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~-~l~~~~~~l~ 286 (804)
......+...+..+..++..+...+.. ........+.....+..++..+...+..-.....+....+- .+......+.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~ 163 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 003672 287 EQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDR-QVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKS 361 (804)
Q Consensus 287 ~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~-l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~ 361 (804)
..+. .....-+..+..+...++.+......-...... ...++..+...+..-.........++-+.-..+..
T Consensus 164 ~~i~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~ 236 (247)
T PF06705_consen 164 EKIE---KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTK 236 (247)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
No 447
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.73 E-value=1.1e+02 Score=29.45 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 185 LDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRV 264 (804)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~l 264 (804)
+.+-..+......+...+-....|+.+...+...+...+.+...++..+.............-.....+...+..+....
T Consensus 87 E~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 003672 265 EKEKLTIVENLSTLRGHNNS 284 (804)
Q Consensus 265 e~e~~~l~~~l~~l~~~~~~ 284 (804)
+..+..++..+..|+.+.+.
T Consensus 167 qaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHhcC
No 448
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.63 E-value=71 Score=27.29 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003672 305 SLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEI 378 (804)
Q Consensus 305 ~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~ 378 (804)
.+-.+...++.+..-++...-+-+.....+...+......+..+..+++.|.-....|...+..++.++.....
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 449
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.57 E-value=1.7e+02 Score=31.63 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003672 132 QKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHR---IEKEARVAAEKLQASL 208 (804)
Q Consensus 132 ~~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~l 208 (804)
...++.+..+-+.++.+... ++.+.++++.+...+.+-....-++..+...+. .+.+-...++.+...
T Consensus 238 k~akehv~km~kdle~Lq~a--------Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r- 308 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRA--------EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR- 308 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 209 SEQLEKAHQDIAAANQRAVS---------LDDMYKR-LQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTL 278 (804)
Q Consensus 209 ~~el~~l~~el~~~~~~~~~---------l~~~~~~-l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l 278 (804)
.+++.++.+++.++.+++. ++.=+.. .+-+.+-++.+....+.++..+.+..+.+++....+-..+.-.
T Consensus 309 -kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~va 387 (575)
T KOG4403|consen 309 -KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVA 387 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeec
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 279 RGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRD 322 (804)
Q Consensus 279 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~ 322 (804)
...- ++.....+-++...+.++...+.+-.....+++.
T Consensus 388 hgss------lDdVD~kIleak~al~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 388 HGSS------LDDVDHKILEAKSALSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred cccc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF15294 Leu_zip: Leucine zipper
Probab=69.46 E-value=1.4e+02 Score=30.69 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 171 AHLREKVAKEESEKLD-AIENHRIEKEARVAAEKLQASLSEQLEK-----AHQDIAAANQRAVSLDDMYKRLQEYNQSLQ 244 (804)
Q Consensus 171 ~~l~~~l~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~l~~el~~-----l~~el~~~~~~~~~l~~~~~~l~~~~~~l~ 244 (804)
......+..+.....+ -...+.+..-...++.+-+..+..-+.. +..... ...--+...+...+...-.++
T Consensus 4 ~kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~h---tn~lllrql~~qAek~~lkl~ 80 (278)
T PF15294_consen 4 SKREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSH---TNVLLLRQLFSQAEKWYLKLQ 80 (278)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH----------HHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 245 LYNAKLQSD-LETANEVNKRVEKEKLT----------IVENLST-----LRGHNNSLQEQLALSRASQDEATKQKDSLVN 308 (804)
Q Consensus 245 ~~~~~l~~~-l~~~~~~l~~le~e~~~----------l~~~l~~-----l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ 308 (804)
..+..++.. +-..-.+.+..+-.... +.-.... +..++..++.+...++..+..++.+....-.
T Consensus 81 ~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~ 160 (278)
T PF15294_consen 81 TDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALD 160 (278)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003672 309 EVRCLRGELQQVRDDRDRQVA---------QVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQ 379 (804)
Q Consensus 309 el~~l~~el~~~~~~~~~l~~---------~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~ 379 (804)
+-..++..+..++........ ++..++..+..++.++... +.+.......++..+......+-..+..
T Consensus 161 Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 161 EKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchh
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003672 380 LAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLI 423 (804)
Q Consensus 380 l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~ 423 (804)
+.....++.. .-.-...|..++..+..-..++.++...+.
T Consensus 238 L~~aekeLek----KfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 238 LSLAEKELEK----KFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred hhcchhhHHH----HhCccHHHHHhHHHHHhccHHHHHHHHHhc
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=69.40 E-value=43 Score=41.07 Aligned_cols=221 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 307 VNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLME-LNSLTTKSKSLEETCSSQREQIRIMEIQLAAANE 385 (804)
Q Consensus 307 ~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e-l~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~ 385 (804)
.+-++-+.......+-.....-..+..++.++..++.+...+..+ -.........++.++..++.++..+.........
T Consensus 383 dkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (852)
T TIGR03346 383 DKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKA 462 (852)
T ss_pred hHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccccCCCCCCCCCCCcceE
Q 003672 386 KLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASII 465 (804)
Q Consensus 386 ~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~~~~~~~ 465 (804)
.+.....-...+ ...............................+.+...-......-.......+..+.+...--..+.
T Consensus 463 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~t 541 (852)
T TIGR03346 463 AIQGIQQIKEEI-EQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWT 541 (852)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhc
Q ss_pred ecCCCcccCCcceeeecCCceeeEeeccccCCC-CChhHHHHHHHHHHHHhhcCCC------eeEEeeccCCCCccee
Q 003672 466 SYPTSLESQGRGIDLIQNGQKFPFTFDKVFNHE-ASQQDVFLEISQLVQSALDGYK------VCIFAYGQTGSGKTYT 536 (804)
Q Consensus 466 ~~p~~~~~~~~~i~l~~~~~~~~~~fd~vf~~~-~~q~~vf~~~~~~v~~~~~G~n------~~v~~yG~t~sGKt~t 536 (804)
-+|.. .+.......--.+..-+... ..|...-..|...|..+..|.+ ++++-+|++|+|||++
T Consensus 542 gip~~--------~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 542 GIPVS--------KMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred CCCcc--------cccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHH
No 452
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=69.29 E-value=36 Score=26.56 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 126 NHVLEKQKIQSALESTEKKLSDTEMEMKN----------RESELNGTILDLRQENAHLREKVAKEE 181 (804)
Q Consensus 126 ~~~~e~~~l~~el~~l~~~~~ele~~l~~----------~~~el~~~l~~l~~~~~~l~~~l~~~~ 181 (804)
+...++.+|..++..++..+..+...|.+ -++.-...+..+..++..+...+..+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 453
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.28 E-value=1.3e+02 Score=30.24 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003672 279 RGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTK 358 (804)
Q Consensus 279 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~ 358 (804)
..++..+-...-.--....++...+.+--.-+-++-..-.-....+...-..--.+-..-.-++..++....+++....+
T Consensus 48 ~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~ 127 (338)
T KOG3647|consen 48 RDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQ 127 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh
Q 003672 359 SKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILE 438 (804)
Q Consensus 359 ~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~ 438 (804)
+.........+..+|+.-..+++..+..+..+.........+|+...++++.++..+..--..+.-+..........-..
T Consensus 128 Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~ 207 (338)
T KOG3647|consen 128 LNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPI 207 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q ss_pred hcccccccccccC
Q 003672 439 LKGNIRVFCRVRP 451 (804)
Q Consensus 439 Lk~~i~~~~r~r~ 451 (804)
.........+.-|
T Consensus 208 rqeeaensm~~i~ 220 (338)
T KOG3647|consen 208 RQEEAENSMPFIP 220 (338)
T ss_pred HHHHHHhcchhhH
No 454
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=69.27 E-value=2.1 Score=39.36 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=0.0
Q ss_pred eEEeeccCCCCcce
Q 003672 522 CIFAYGQTGSGKTY 535 (804)
Q Consensus 522 ~v~~yG~t~sGKt~ 535 (804)
.|+.+|+.|||||+
T Consensus 1 lii~~G~pgsGKSt 14 (143)
T PF13671_consen 1 LIILCGPPGSGKST 14 (143)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
No 455
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=68.73 E-value=1.5 Score=38.29 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003672 523 IFAYGQTGSGKTYTM 537 (804)
Q Consensus 523 v~~yG~t~sGKt~t~ 537 (804)
|+.||++|+|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
No 456
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=68.59 E-value=60 Score=31.32 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHhHHHHHHHHHHHHHH
Q 003672 302 QKDSLVNEVRCLRGELQQVRDDRDR----QVAQVQTLTAEIVKYQESTGKSLMELN----SLTTKSKSLEETCSSQREQI 373 (804)
Q Consensus 302 ~~~~l~~el~~l~~el~~~~~~~~~----l~~~~~~l~~el~~l~~~~~~l~~el~----~l~~~~~~le~~~~~~~~~l 373 (804)
+.-.|+.++..|...+..++..... -.....-.+.+++.+-.-....-.++. .-...+..+.+.+..+++++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003672 374 RIMEIQLAAANEKLKMADL 392 (804)
Q Consensus 374 ~~l~~~l~~l~~~l~~~~~ 392 (804)
..|+.-|..-+.++..++.
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 457
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=68.47 E-value=86 Score=27.81 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHH
Q 003672 275 LSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDR--------------------QVAQVQTL 334 (804)
Q Consensus 275 l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~--------------------l~~~~~~l 334 (804)
.+.++..+...+.+|.....++..++..+.....-+..-+.++......+.+ ...++..+
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a 82 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRA 82 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 335 TAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLK 388 (804)
Q Consensus 335 ~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~ 388 (804)
...+..-+..+...+.++..+...+.....-+....++...-+......+.++.
T Consensus 83 ~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 83 QKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 458
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=68.43 E-value=1.4e+02 Score=30.21 Aligned_cols=241 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 133 KIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQL 212 (804)
Q Consensus 133 ~l~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el 212 (804)
.+......+......+... ..++.....+..............+...............................+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEE----LEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVV 76 (262)
T ss_pred ChhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 213 EKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLY---------------------NAKLQSDLETANEVNKRVEKEKLTI 271 (804)
Q Consensus 213 ~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~---------------------~~~l~~~l~~~~~~l~~le~e~~~l 271 (804)
..+...+..+......+......+...-.....- ......-.........+....+..+
T Consensus 77 ~~~~~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~ 156 (262)
T smart00283 77 EEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEI 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003672 272 VENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLME 351 (804)
Q Consensus 272 ~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e 351 (804)
.................+.............+......+..+...+..+.................+.............
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 236 (262)
T smart00283 157 QEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAM 236 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003672 352 LNSLTTKSKSLEETCSSQREQIRIME 377 (804)
Q Consensus 352 l~~l~~~~~~le~~~~~~~~~l~~l~ 377 (804)
..........+......+...+..++
T Consensus 237 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 237 SEEISAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
No 459
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=68.31 E-value=1e+02 Score=33.26 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 003672 100 KAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKN-------RESELNGTILDLRQENAH 172 (804)
Q Consensus 100 k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~-------~~~el~~~l~~l~~~~~~ 172 (804)
+.++.++.+.+..|...+--|-.+.+-....++.++.+|+-+.........++.. ..+-|...+.+++..+..
T Consensus 478 ~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d 557 (583)
T KOG3809|consen 478 REKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEIND 557 (583)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003672 173 LREKVAKEESEKLDAIENHRIE 194 (804)
Q Consensus 173 l~~~l~~~~~e~~~~~~~~~~~ 194 (804)
.++.+.+.+..+......+...
T Consensus 558 ~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 558 TKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
No 460
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=68.28 E-value=94 Score=28.21 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003672 281 HNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTT 357 (804)
Q Consensus 281 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~ 357 (804)
+...+...++.....+......+......+..+.............+..........+..-+..+..+..+.+.++.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 461
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.27 E-value=2.2 Score=42.86 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=0.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
.|..++.... ..+..||.|||||+|+
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHH
No 462
>PRK02119 hypothetical protein; Provisional
Probab=68.27 E-value=41 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 365 TCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQELQERLAEA 418 (804)
Q Consensus 365 ~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l 418 (804)
.+..+..++..|+.++.-.+.-+..++..+.+...+++.+...+..+..++.++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 463
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=68.11 E-value=96 Score=28.23 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003672 209 SEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLET----ANEVNKRVEKEKLTIVENLSTLRGHNNS 284 (804)
Q Consensus 209 ~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~----~~~~l~~le~e~~~l~~~l~~l~~~~~~ 284 (804)
...+..++..-+.++..-.+..+.+........+....+..+..+++. ...++..+.+.++....++..+......
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 285 LQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVR 321 (804)
Q Consensus 285 l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~ 321 (804)
.+.++..+.....+..++...|-..+-.|-.+-+.++
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=67.92 E-value=4 Score=44.01 Aligned_cols=42 Identities=29% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHHHHHHhhcCC-----CeeEEeeccCCCCcceee
Q 003672 496 NHEASQQDVFLEISQLVQSALDGY-----KVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 496 ~~~~~q~~vf~~~~~~v~~~~~G~-----n~~v~~yG~t~sGKt~t~ 537 (804)
+........|.+....+..++--- ...|.-.||||.|||+|+
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 174 DESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred ccccchhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
No 465
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.89 E-value=90 Score=27.83 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 135 QSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEK 214 (804)
Q Consensus 135 ~~el~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~ 214 (804)
+.++...+..+.....++......+......+...-..+...+.....-+.+..............-.........++..
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 215 AHQDIAAANQRAVSLDDMYKRLQEYNQSLQL 245 (804)
Q Consensus 215 l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~ 245 (804)
+..++..+...+..+...+..+..+..=|..
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~ 116 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEEYKKYEEFLEK 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.89 E-value=1.6e+02 Score=33.99 Aligned_cols=202 Identities=8% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003672 301 KQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQL 380 (804)
Q Consensus 301 ~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l 380 (804)
...+.++..++..++.......++- -..++...+..++.++..-=+.-.++.....++..+..++......+..+..++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccccCCCCCCCCC
Q 003672 381 AAANEKLKMADLSSMET-RAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDDGVG 459 (804)
Q Consensus 381 ~~l~~~l~~~~~~~~~~-~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~ 459 (804)
......+...-..+..+ +..+..+...+.--..-...+...+-.. .+.............+.-++.--.-.+.+...
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~~~~~~~~L~g~--~i~~~~~~~~~~y~~~~p~i~~~~~~~~~e~~ 320 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGP--EIRKYLQKFLKYYDQAEPLLNKSKKEPKEEAV 320 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcccHHHHHHHHhhH--HHHHHHHHHHHHHHHHhHhhccchhccchhhh
Q ss_pred CC---cceEecCCCcccCCcceeeec-CCcee---eEeeccccCCCCChhHHH
Q 003672 460 AD---ASIISYPTSLESQGRGIDLIQ-NGQKF---PFTFDKVFNHEASQQDVF 505 (804)
Q Consensus 460 ~~---~~~~~~p~~~~~~~~~i~l~~-~~~~~---~~~fd~vf~~~~~q~~vf 505 (804)
.. ...|.|........-.|.-.. ++... .+.|+..+..=+++.+++
T Consensus 321 ~~~~~G~~i~F~~~~~~P~~lIk~~~vs~~~~~~~~~~~~~~~~niT~~~~~~ 373 (555)
T TIGR03545 321 ETLANGEDYDFKDDNPYPDFLIKKADVSGKMPDGDVGEIKGEVSNITNDHDLL 373 (555)
T ss_pred ccccCCceEEccCCCCCCcEEEEeeeEeeeecCCCcceEEEEEEecCCChhhh
No 467
>PRK10536 hypothetical protein; Provisional
Probab=67.78 E-value=2.9 Score=42.42 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=0.0
Q ss_pred eEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcce
Q 003672 488 PFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTY 535 (804)
Q Consensus 488 ~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~ 535 (804)
.|.|..|-+-+..|......+.. +.-|+..|+.||||||
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~ 89 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIES---------KQLIFATGEAGCGKTW 89 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhc---------CCeEEEECCCCCCHHH
No 468
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.64 E-value=2.2e+02 Score=34.50 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003672 138 LESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARV-AAEKLQASLSEQLEKAH 216 (804)
Q Consensus 138 l~~l~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~l~~el~~l~ 216 (804)
++..+.-+.+-..++..-++.++.+..+++.....++..+.+++..+.++....+...++.. ..++...+.+.-+...+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 217 QDIAAANQRAVS------LDDMYKRLQEYNQSLQLYNAKLQS 252 (804)
Q Consensus 217 ~el~~~~~~~~~------l~~~~~~l~~~~~~l~~~~~~l~~ 252 (804)
.+.+.+-.++.+ .....+...+....+......+..
T Consensus 584 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 584 KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 469
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.63 E-value=68 Score=27.80 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 321 RDDRDRQVAQVQTLTAEIVKYQESTGKS--LMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEK 386 (804)
Q Consensus 321 ~~~~~~l~~~~~~l~~el~~l~~~~~~l--~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~ 386 (804)
+.++..+...+......+..++.+++.+ ..++..|...+.+++.++..+..+++.+.....-+-+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 470
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=67.61 E-value=5.7 Score=43.72 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCee-----EEeeccCCCCcceeeccCCCCccCCCchHHHHHHHHHhhhhhhhcCcEEEEEEEE
Q 003672 503 DVFLEISQLVQSALDGYKVC-----IFAYGQTGSGKTYTMMGKPEAQEHKGLIPRSLEQIFQTSQFLLVQGWKFKMQASM 577 (804)
Q Consensus 503 ~vf~~~~~~v~~~~~G~n~~-----v~~yG~t~sGKt~t~~G~~~~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~ 577 (804)
+.|.+|.+++...=.|||.. |+..|.-.+|||..+ .--.+.-|+||---++...
T Consensus 286 DMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVL----EmiAqARIFPRGSGEMMTR----------------- 344 (980)
T KOG0447|consen 286 DMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVL----EMIAQARIFPRGSGEMMTR----------------- 344 (980)
T ss_pred HHHHHHHHHHhcccccccccccCceEEEEcCccccchHHH----HHHHHhccCcCCCcceecc-----------------
Q ss_pred eeeechhhhhhcCCCCCCCCCCccccCCCCCCcceEEeCCCCCeEecccEEEEcCCHHHHHHHHHHHHhccccccccCcc
Q 003672 578 LEIYNETIRDLLSTSRAGGSDLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNE 657 (804)
Q Consensus 578 ~Ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~v~s~~e~~~ll~~~~~~R~~~~t~~n~ 657 (804)
.+..+.+-+.|..-..+++...-.=-+-++=.+-|..-...|...+...+-
T Consensus 345 -----------------------------aPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~Gk 395 (980)
T KOG0447|consen 345 -----------------------------SPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGC 395 (980)
T ss_pred -----------------------------CCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCc
Q ss_pred cCCCceeEEEEEEEeeeccccceeeeeEEEEecCCCcccccCCCCccchHHhHHHHHhHHHHHHHHHHhccCCCCCCcCC
Q 003672 658 YSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRN 737 (804)
Q Consensus 658 ~ssrsH~i~~l~i~~~~~~~~~~~~~~l~~VDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~vp~r~ 737 (804)
.-|.-++.+.|.+.+.. ++.+|||+|--..-.++...+.-...-.+.+..+.=-+.|. |.=....|..-.
T Consensus 396 --TVSnEvIsltVKGPgLq-------RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAII-LCIQDGSVDAER 465 (980)
T KOG0447|consen 396 --TVSPETISLNVKGPGLQ-------RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAII-LCIQDGSVDAER 465 (980)
T ss_pred --ccccceEEEeecCCCcc-------eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEE-EEeccCCcchhh
Q ss_pred CcccccccccCCCCceEEEEEE
Q 003672 738 SKLTYLLQPCLGRDSKTLMFVN 759 (804)
Q Consensus 738 s~LT~lL~~~l~g~s~t~~i~~ 759 (804)
|..|-|...|=-..-+|+++.+
T Consensus 466 SnVTDLVsq~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRRTIFVLT 487 (980)
T ss_pred hhHHHHHHhcCCCCCeeEEEEe
No 471
>PRK02119 hypothetical protein; Provisional
Probab=67.60 E-value=50 Score=26.44 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 211 QLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVE 265 (804)
Q Consensus 211 el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le 265 (804)
++..+...+..++.++.-.+..+..+...+...+..+..++..+..+...+..+.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 472
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=67.49 E-value=4.7 Score=43.08 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred eeEeeccccCCCCChhHHHHH-HHHHHHHhhc----CCCeeEEeeccCCCCcce
Q 003672 487 FPFTFDKVFNHEASQQDVFLE-ISQLVQSALD----GYKVCIFAYGQTGSGKTY 535 (804)
Q Consensus 487 ~~~~fd~vf~~~~~q~~vf~~-~~~~v~~~~~----G~n~~v~~yG~t~sGKt~ 535 (804)
..+.||.+.+.=.-...+++. +.+++.+++. ..---++.|||.|+|||+
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTl 163 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSF 163 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHH
No 473
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.37 E-value=1.2e+02 Score=29.17 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhHHHHHH
Q 003672 225 RAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRV----------------EKEKLTIVENLSTLRGHNNSLQEQ 288 (804)
Q Consensus 225 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~l----------------e~e~~~l~~~l~~l~~~~~~l~~~ 288 (804)
++....+........+..|+..+......+..++..+..- ...+..+...+.+-+.....|...
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 003672 289 LALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSS 368 (804)
Q Consensus 289 l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~ 368 (804)
..-++.+++.....-+.|..++..+..++..+..++..-+.....-+..+.. .+..-...+-.|..++..+...+.+
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~---y~~~eh~rll~LWr~v~~lRr~f~e 159 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ---YLSSEHSRLLSLWREVVALRRQFAE 159 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003672 369 QREQIRIMEIQLAAANEKLKMA 390 (804)
Q Consensus 369 ~~~~l~~l~~~l~~l~~~l~~~ 390 (804)
++..-+ ..|..++.++...
T Consensus 160 lr~~Te---rdL~~~r~e~~r~ 178 (182)
T PF15035_consen 160 LRTATE---RDLSDMRAEFART 178 (182)
T ss_pred HHHHHH---hhHHHHHHHHHHH
No 474
>PF15456 Uds1: Up-regulated During Septation
Probab=67.34 E-value=94 Score=27.82 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003672 308 NEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKS-----------LMELNSLTTKSKSLEETCSSQREQIRIM 376 (804)
Q Consensus 308 ~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l-----------~~el~~l~~~~~~le~~~~~~~~~l~~l 376 (804)
.+++.++.++..+...++.++..+. ++..+.+.-..+..+ ......-...+......|+++..++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 003672 377 EIQLAAANEKL 387 (804)
Q Consensus 377 ~~~l~~l~~~l 387 (804)
+..+..+...+
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 475
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.29 E-value=62 Score=28.05 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003672 314 RGELQQVRDDRDRQVAQVQTLTAEIVKY--QESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQ 379 (804)
Q Consensus 314 ~~el~~~~~~~~~l~~~~~~l~~el~~l--~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~ 379 (804)
+.++..+.........++..++.++..+ ...+..++-.+.+++.++..+...++.+.....-|-+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=66.98 E-value=2.6e+02 Score=32.87 Aligned_cols=320 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Q 003672 94 TKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKN--------------RESEL 159 (804)
Q Consensus 94 ~~k~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~--------------~~~el 159 (804)
+.+..-..++....-++..++...+...........+.+.....+++..+++.+++..|.. ..+.+
T Consensus 880 eakeaeenkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~ 959 (1424)
T KOG4572|consen 880 EAKEAEENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDK 959 (1424)
T ss_pred HHHHHHhhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 003672 160 NGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKR-LQE 238 (804)
Q Consensus 160 ~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~-l~~ 238 (804)
..-..+...+++..-.++..+.....+..+..... .....++.....+..+++..+.+++.+..+++++...+.+ -+.
T Consensus 960 kkLhaE~daeLe~~~ael~eleqk~le~~eDea~a-Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~ 1038 (1424)
T KOG4572|consen 960 KKLHAEIDAELEKEFAELIELEQKALECKEDEAFA-RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEG 1038 (1424)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 239 YNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQ 318 (804)
Q Consensus 239 ~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~ 318 (804)
++...+-....+..--..++.++...+.+.++...-...-+.+......-+ ...+++.+..+++.+...+.
T Consensus 1039 el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L---------~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1039 ELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKIL---------KEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred hHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 003672 319 QVRDDRDRQVAQVQT---------LTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEI----QLAAANE 385 (804)
Q Consensus 319 ~~~~~~~~l~~~~~~---------l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~----~l~~l~~ 385 (804)
.-....+-....... ...-+.++...-.-+......+..-....-+-...++.++-.+.. .+..+..
T Consensus 1110 dnne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknlkeQaielank~dpeLraiea 1189 (1424)
T KOG4572|consen 1110 DNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEA 1189 (1424)
T ss_pred cCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHh
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhh
Q 003672 386 KLKMADLSSMETRAEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTI 436 (804)
Q Consensus 386 ~l~~~~~~~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i 436 (804)
.+.. +.-++-.+....++.+...+......+++...++
T Consensus 1190 d~de-------------eitQkdee~eaiIa~ld~d~dh~~de~ekdreqL 1227 (1424)
T KOG4572|consen 1190 DIDE-------------EITQKDEETEAIIAMLDIDIDHDRDEIEKDREQL 1227 (1424)
T ss_pred hhhH-------------HHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 477
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=66.75 E-value=3.6 Score=44.00 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 503 DVFLE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 503 ~vf~~-~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
..|.. +..+|...=..-..+|.-+|+.|||||+.|
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
No 478
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.74 E-value=51 Score=33.52 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHhh
Q 003672 233 YKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLS-------------------------------TLRGH 281 (804)
Q Consensus 233 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~-------------------------------~l~~~ 281 (804)
++.++..+..+..++.+.+.-+.+++.++..++........... .-..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 282 NNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTA 336 (804)
Q Consensus 282 ~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~ 336 (804)
+.-+..|-+.++....+++.++.....++..++.+++.++.+-..+-+++.=++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.63 E-value=1.9e+02 Score=31.10 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 003672 241 QSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDS---LVNEVRCLRGEL 317 (804)
Q Consensus 241 ~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~---l~~el~~l~~el 317 (804)
..++..+..++.++...+..+...+..+......+...+.++...+.++...+........-.+. .+.+++..+..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 003672 318 QQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLE 363 (804)
Q Consensus 318 ~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le 363 (804)
...+.++...+.++......+..+......+......+......+.
T Consensus 162 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 162 RDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 480
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.58 E-value=3.4 Score=42.80 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred eccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 491 FDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 491 fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
|..+|-|.........-+..++. .+--|+.+|++|||||.++
T Consensus 9 ~~~~~VpT~dt~r~~~ll~~l~~-----~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 9 FNEILVPTVDTVRYSYLLDLLLS-----NGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp ----T---HHHHHHHHHHHHHHH-----CTEEEEEESSTTSSHHHHH
T ss_pred cceEEeCcHHHHHHHHHHHHHHH-----cCCcEEEECCCCCchhHHH
No 481
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=66.48 E-value=1.3e+02 Score=29.09 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 131 KQKIQSALESTEKKLSDTEMEMKN--------RESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAE 202 (804)
Q Consensus 131 ~~~l~~el~~l~~~~~ele~~l~~--------~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~ 202 (804)
...+...+..+..=+.+.+..+.. .++.....+..+..++......+..+......+..... .....+.
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~---~~~~~i~ 78 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH---PDAEEIQ 78 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---CChHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003672 203 KLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHN 282 (804)
Q Consensus 203 ~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~ 282 (804)
..+..+...-..+..........+...-........... +..-+......+....... --..+......+..+...+
T Consensus 79 ~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~~~~~ 155 (213)
T cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGK--DLESVEELLKKHKELEEEL 155 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 283 NSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVK 340 (804)
Q Consensus 283 ~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~ 340 (804)
......+..+......+......... ..+...+..+......+...+......+..
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 156 EAHEPRLKSLNELAEELLEEGHPDAD--EEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HhchHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PRK09183 transposase/IS protein; Provisional
Probab=66.42 E-value=3.2 Score=42.74 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=0.0
Q ss_pred eccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 491 FDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 491 fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
||-=|.+..+. ..+..+-...+-...-.|+.+|++|+||||.+
T Consensus 77 fd~~~~~~~~~----~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 77 YDFTFATGAPQ----KQLQSLRSLSFIERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred cccccCCCCCH----HHHHHHhcCCchhcCCeEEEEeCCCCCHHHHH
No 483
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=66.30 E-value=35 Score=41.32 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHH
Q 003672 322 DDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRI---MEIQLAAANEKLKMADLSSMETR 398 (804)
Q Consensus 322 ~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~---l~~~l~~l~~~l~~~~~~~~~~~ 398 (804)
.++-+.-..+-..+-++.+++.++...-++--+-.++---|.+++..+++++.+ -+.+++.+++++..+. --.+..
T Consensus 188 ~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~-~~~~~~ 266 (775)
T TIGR00763 188 EKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELK-LPEEVK 266 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcC-CCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhcccccccccccCCCCCCCCCCCcceEecCCCcccCCcce
Q 003672 399 AEFEEKQRVAQELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQGRGI 478 (804)
Q Consensus 399 ~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~~~~i 478 (804)
+.+..--.++..+.....+..--..-++....-=......-.-.+..+-+.-.
T Consensus 267 ~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~--------------------------- 319 (775)
T TIGR00763 267 KVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILD--------------------------- 319 (775)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhh---------------------------
Q ss_pred eeecCCceeeEeeccccCCCCChhHHHHHHH-HHHHHhhcCCCeeEEeeccCCCCccee
Q 003672 479 DLIQNGQKFPFTFDKVFNHEASQQDVFLEIS-QLVQSALDGYKVCIFAYGQTGSGKTYT 536 (804)
Q Consensus 479 ~l~~~~~~~~~~fd~vf~~~~~q~~vf~~~~-~~v~~~~~G~n~~v~~yG~t~sGKt~t 536 (804)
+.+|+.+.-...|..-+. +.+..-..|. .++-|||+|+|||++
T Consensus 320 -------------~~~~G~~~~k~~i~~~~~~~~~~~~~~~~--~lll~GppG~GKT~l 363 (775)
T TIGR00763 320 -------------EDHYGLKKVKERILEYLAVQKLRGKMKGP--ILCLVGPPGVGKTSL 363 (775)
T ss_pred -------------hhcCChHHHHHHHHHHHHHHHhhcCCCCc--eEEEECCCCCCHHHH
No 484
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.24 E-value=2 Score=39.34 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=0.0
Q ss_pred EEeeccCCCCcceee
Q 003672 523 IFAYGQTGSGKTYTM 537 (804)
Q Consensus 523 v~~yG~t~sGKt~t~ 537 (804)
|+.+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 485
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=66.05 E-value=3.3 Score=44.13 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 495 FNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 495 f~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
|+.=..|.++...+...+.. ......++-||++|+|||+.+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~--~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 20 IDECILPAADKETFKSIVKK--GRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhc--CCCCeEEEeeCcCCCCHHHHH
No 486
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.04 E-value=97 Score=32.80 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH
Q 003672 333 TLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADL-SSMETRAEFEEKQRVAQEL 411 (804)
Q Consensus 333 ~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~-~~~~~~~e~~~l~~~l~~l 411 (804)
+..++.++++++.+++++.-.....+++++.+-.......+..-..++..+...+..... ...+..+.+++++..+.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh
Q 003672 412 QERLAEAEHQL 422 (804)
Q Consensus 412 ~~~~~~l~~~l 422 (804)
...+.+.+.-+
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 487
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=65.85 E-value=3.1 Score=44.25 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred eeEeeccccCCCCChhHHHHHHHHHHHHhhcCCCeeEEeeccCCCCcceee
Q 003672 487 FPFTFDKVFNHEASQQDVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 487 ~~~~fd~vf~~~~~q~~vf~~~~~~v~~~~~G~n~~v~~yG~t~sGKt~t~ 537 (804)
++-.|+.++ .+.++-..+...+.. |....++-||+.|+|||+++
T Consensus 12 rP~~~~~~~----g~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 12 RPRTLDEIV----GQEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCcHHHhc----CcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHH
No 488
>PHA00729 NTP-binding motif containing protein
Probab=65.36 E-value=4.1 Score=40.58 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcce
Q 003672 511 LVQSALDGYKVCIFAYGQTGSGKTY 535 (804)
Q Consensus 511 ~v~~~~~G~n~~v~~yG~t~sGKt~ 535 (804)
++..+..|.-..|+.+|++|+||||
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~ 32 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTT 32 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHH
No 489
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=65.35 E-value=3.5 Score=39.61 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHhhc-CCCeeEEeeccCCCCcceee
Q 003672 508 ISQLVQSALD-GYKVCIFAYGQTGSGKTYTM 537 (804)
Q Consensus 508 ~~~~v~~~~~-G~n~~v~~yG~t~sGKt~t~ 537 (804)
++.++..+.. .....|+..|+.|||||..+
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHH
No 490
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=64.97 E-value=65 Score=28.80 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------
Q 003672 226 AVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHN----------------------- 282 (804)
Q Consensus 226 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~----------------------- 282 (804)
+..+...+..+++++..++..+..+...+..+...+..+ ..+... .....-+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L----~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG 75 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETL----EDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIG 75 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 283 ------NSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDR 326 (804)
Q Consensus 283 ------~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~ 326 (804)
..+.+.+.-+...+..+...++.+...+..+..++..+...++.
T Consensus 76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.90 E-value=48 Score=24.76 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 144 KLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHR 192 (804)
Q Consensus 144 ~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~ 192 (804)
++.+++.+ +..+...+..++.+++.+...++.++....++..-|+
T Consensus 1 Ri~elEn~----~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 1 RIDELENE----LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.77 E-value=46 Score=26.28 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 214 KAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVE 265 (804)
Q Consensus 214 ~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le 265 (804)
.+...+..++.++.-.+..+..+...+...+..+..++..+..+...+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=64.74 E-value=2e+02 Score=30.65 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 003672 283 NSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSL 362 (804)
Q Consensus 283 ~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~l 362 (804)
..+..++...+..+..+..++..++..+..+..++...+..+...+.++...+.+++.++.-.+.---.-.++......+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003672 363 EETCSSQREQIR-IMEIQLAAANEKLKMADLSSMETRAEFEEKQRVAQEL 411 (804)
Q Consensus 363 e~~~~~~~~~l~-~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l~~l 411 (804)
......+..... .+.................+..++.+++..+..+...
T Consensus 156 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 156 LSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 494
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=64.73 E-value=1e+02 Score=27.38 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 264 VEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIVKYQE 343 (804)
Q Consensus 264 le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~~l~~ 343 (804)
++-.++.+...|.++........+++...+.-...+..+++.+..+...++.-+...+..+.-++-..+..+.+......
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~ 83 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQT 83 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred H------HHhHHHHHHHHHHHhHHH
Q 003672 344 S------TGKSLMELNSLTTKSKSL 362 (804)
Q Consensus 344 ~------~~~l~~el~~l~~~~~~l 362 (804)
. .-.....++++..+.+.+
T Consensus 84 ~~~eck~R~~fe~qLE~lm~qHKdL 108 (134)
T PF15233_consen 84 LLQECKLRLDFEEQLEDLMGQHKDL 108 (134)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.71 E-value=1.9e+02 Score=30.41 Aligned_cols=218 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCchhhhhccccCcccCcccCCCCCCCccceeccCcccccccccCCCCCCCCccccccc
Q 003672 1 MASRNQNRPPRSPSIKKEGTDDVPFDKRRRIGAGRTTGATSTGTGRPRQAFAVVNNRQDVSAASDMASTEGSDCGTIEFT 80 (804)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (804)
|.||...+||++-|+.--+.+ +.+++|..+...=++=....+.+ ...-|++.....+..--..
T Consensus 141 ~ys~~~~~~p~p~p~~~~~~~-----------p~~p~~~~~~~p~p~p~~~~gas------~~~~~~~d~~~~yp~n~~~ 203 (365)
T KOG2391|consen 141 VYSRSLPSPPPPYPQTEYNTP-----------PLKPKGSAYKPPLPPPPPPGGAS------ALPYMTDDNAEPYPPNASG 203 (365)
T ss_pred cccCCCCCCCCCCCcccCCCC-----------CCCCCCcCcCCCCCCCCCCCccc------cCcccCCCCCCcCCCCccc
Q ss_pred HHHHHHHhccccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 81 KEEVEALLNEKPK-TKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESEL 159 (804)
Q Consensus 81 ~eev~~ll~e~~~-~~k~~~k~k~e~l~~~l~~l~~~i~~l~~~~~~~~~e~~~l~~el~~l~~~~~ele~~l~~~~~el 159 (804)
+--+.+....... +-....+++++.+..+...++..-+.+..-...+..+++.|+.++..+++.++-+... .++.
T Consensus 204 ~~~irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k----~~ea 279 (365)
T KOG2391|consen 204 KLVIRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK----VREA 279 (365)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 160 NGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEY 239 (804)
Q Consensus 160 ~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~ 239 (804)
....+. .+.-...+.+. ...-+.+++-..-..-..++.-+-.|.+.+..-.-.+...-..+..+..+.=-++..
T Consensus 280 l~~~~n--~~~~~~D~~~~----~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat 353 (365)
T KOG2391|consen 280 LEKAEN--LEALDIDEAIE----CTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRAT 353 (365)
T ss_pred Hhhhcc--CcCCCchhhhh----ccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 003672 240 NQSLQL 245 (804)
Q Consensus 240 ~~~l~~ 245 (804)
.+..++
T Consensus 354 ~qk~r~ 359 (365)
T KOG2391|consen 354 MQKCRQ 359 (365)
T ss_pred HHHHHH
No 496
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=64.62 E-value=2.1e+02 Score=30.92 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 191 HRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYK-------RLQEYNQSLQLYNAKLQSDLETANEVNKR 263 (804)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~-------~l~~~~~~l~~~~~~l~~~l~~~~~~l~~ 263 (804)
+......+..+..........+......+..-...-+.+...+. ........+...+.++..-++.+...=..
T Consensus 73 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~ 152 (353)
T cd09236 73 LERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDEL 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 264 VEKEKLTIVENLSTLRGHNNSLQEQLALSRA-----SQDEATKQKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEI 338 (804)
Q Consensus 264 le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~-----~~~~l~~~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el 338 (804)
+...+......+.-|..-...+...+-.... .....-..+..+-.++..++.+-..+..++......-.-...-+
T Consensus 153 v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~DDI~~~ll 232 (353)
T cd09236 153 VRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKARADDIRPEIL 232 (353)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q ss_pred HHHHHHHHh----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003672 339 VKYQESTGK----------SLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRAEFEEKQRVA 408 (804)
Q Consensus 339 ~~l~~~~~~----------l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~e~~~l~~~l 408 (804)
..+...-.. .+.-...--.+...+...+......-..+-.++......+.. .........+.+..-+.+
T Consensus 233 ~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~-~~~~~~~~~~re~~lq~L 311 (353)
T cd09236 233 REAARLEREYPATEVAPAHFEDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQ-SRKGDPATKERERALQSL 311 (353)
T ss_pred HHHHhhhcccccccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccChhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhccccccccccc
Q 003672 409 QELQERLAEAEHQLIEGEKLRKKLHNTILELKGNIRVFCRVR 450 (804)
Q Consensus 409 ~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~Lk~~i~~~~r~r 450 (804)
...+..+.++...+.+...=...|...+..++..+..||.-|
T Consensus 312 ~~ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~~R 353 (353)
T cd09236 312 DLAYFKYKEIVSNLDEGRKFYNDLAKILSQFRDACKAWVYER 353 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 497
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.57 E-value=2e+02 Score=30.65 Aligned_cols=326 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 142 EKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAA 221 (804)
Q Consensus 142 ~~~~~ele~~l~~~~~el~~~l~~l~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~l~~el~~ 221 (804)
+..+++++.. ...+..+...+......|..+|.--..++..+...+...+..+..+.....+.+...-........
T Consensus 57 e~~lq~~e~r----a~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~d~i~y~n~~Ry 132 (442)
T PF06637_consen 57 ESRLQATEQR----ADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQADRIQYTNNQRY 132 (442)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003672 222 ANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATK 301 (804)
Q Consensus 222 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 301 (804)
.-.-+...+.-...+.+........+-.|......+ .-++..+..-....-..+-......+.++............
T Consensus 133 ~aAIi~sekqc~eqLke~Nksc~al~~~L~~k~Ktl---e~E~~kek~vctkdKE~ll~~kr~~e~Q~~~C~k~re~q~q 209 (442)
T PF06637_consen 133 MAAIILSEKQCQEQLKEINKSCNALLLMLNQKAKTL---EVELAKEKAVCTKDKEGLLLSKRQVEEQLEECGKAREQQQQ 209 (442)
T ss_pred HHHHHHhHhhhhHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHh
Q 003672 302 QKDSLVNEVRCLRGELQQVRDDRDRQVAQVQTLTAEIV----------------------------------KYQESTGK 347 (804)
Q Consensus 302 ~~~~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~el~----------------------------------~l~~~~~~ 347 (804)
+..-.+..+...+.-.-.+..+.-...-..---..-+. ..++-...
T Consensus 210 e~QLae~~lq~vq~~C~pLDkdk~~~~l~~lWRDSii~R~Ld~~~y~ly~~l~~el~siRr~Cd~lP~~m~tKveelar~ 289 (442)
T PF06637_consen 210 ERQLAEEQLQKVQALCLPLDKDKFETDLRNLWRDSIIPRSLDNLGYSLYHPLGPELESIRRTCDHLPKIMTTKVEELARS 289 (442)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCcchHHHHHHHHhhchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003672 348 SLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLS-SMETRAEFEEKQRVAQELQERLAEAEHQLIEGE 426 (804)
Q Consensus 348 l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~-~~~~~~e~~~l~~~l~~l~~~~~~l~~~l~~~~ 426 (804)
+...++....+-..|+.+....+..+..-++.-+....+-..-..+ ..+.-.+-.-..++-..+..+...+..++++..
T Consensus 290 Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekk 369 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKK 369 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhcccccccccccCCCCCCCCCCCcceEecCCCcccC
Q 003672 427 KLRKKLHNTILELKGNIRVFCRVRPLLPDDGVGADASIISYPTSLESQ 474 (804)
Q Consensus 427 ~~~~~l~~~i~~Lk~~i~~~~r~r~~~~~e~~~~~~~~~~~p~~~~~~ 474 (804)
.....+.-++.--...+..+++.+.....-...+....-.+|..+..+
T Consensus 370 releql~~q~~v~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp~~ 417 (442)
T PF06637_consen 370 RELEQLKMQLAVKTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDPAS 417 (442)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCChHH
No 498
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.51 E-value=44 Score=26.39 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 003672 347 KSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETR 398 (804)
Q Consensus 347 ~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~ 398 (804)
.++..+..|+.++.-.+..+..+...+...+.++..++..+..+..++..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.39 E-value=91 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 207 SLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLR 279 (804)
Q Consensus 207 ~l~~el~~l~~el~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~ 279 (804)
.+-.+...++.+...+..-+-+.+.....+.+.+...+..+..++.+++.+.=.-..+.+.+..++.++....
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.27 E-value=15 Score=44.55 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003672 240 NQSLQLYNAKLQSDLETANEVNKRVEKEKLTIVENLSTLRGHNNSLQEQLALSRASQDEATKQKDSLVNEVRCLRGELQQ 319 (804)
Q Consensus 240 ~~~l~~~~~~l~~~l~~~~~~l~~le~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~el~~l~~el~~ 319 (804)
...+...+..+......+............++...+...+......+.+....-..+..+...+..+...+.....++..
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~ 509 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISS 509 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 003672 320 VRDDRDRQVAQVQTLTAEIVKYQESTGKSLMELNSLTTKSKSLEETCSSQREQIRIMEIQLAAANEKLKMADLSSMETRA 399 (804)
Q Consensus 320 ~~~~~~~l~~~~~~l~~el~~l~~~~~~l~~el~~l~~~~~~le~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~~~~~~~ 399 (804)
+..++..+..+...+...+...+.+++.+..++..+..++.........+...+.......+.+................
T Consensus 510 ~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~ 589 (847)
T KOG0998|consen 510 LEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSST 589 (847)
T ss_pred HHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchh
Q ss_pred HHHHH
Q 003672 400 EFEEK 404 (804)
Q Consensus 400 e~~~l 404 (804)
++..+
T Consensus 590 ~l~~~ 594 (847)
T KOG0998|consen 590 ELAGY 594 (847)
T ss_pred hhhhh
Done!