BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003673
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 336 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRRKIMEYLRDAWASDRRAEWSIWMVYS 395
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 164 GLPPPLEYADLAAVGTIADVAPLWGWNRALV--KEGLARIPASSWVGLRLLAEAVGYTGK 221
Query: 396 KVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRINNR 455
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 222 AVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTLEEA 277
Query: 456 SLQDMYIFGDPSSIPIVIVD 475
L+ + DP + IV++D
Sbjct: 278 MLRKLLPQADPEAKAIVLLD 297
>pdb|2ZXO|A Chain A, Crystal Structure Of Recj From Thermus Thermophilus Hb8
pdb|2ZXP|A Chain A, Crystal Structure Of Recj In Complex With Mn2+ From
Thermus Thermophilus Hb8
pdb|2ZXR|A Chain A, Crystal Structure Of Recj In Complex With Mg2+ From
Thermus Thermophilus Hb8
Length = 666
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 336 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRRKIMEYLRDAWASDRRAEWSIWMVYS 395
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 203 GLPPPLEYADLAAVGTIADVAPLWGWNRALV--KEGLARIPASSWVGLRLLAEAVGYTGK 260
Query: 396 KVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRINNR 455
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 261 AVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTLEEA 316
Query: 456 SLQDMYIFGDPSSIPIVIVD 475
L+ + DP + IV++D
Sbjct: 317 MLRKLLPQADPEAKAIVLLD 336
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 559 LMSEVNEDKTYGDFREMGQRLAEEVISFVKRKMDKA---SRSGNLRDIMLSFVGHSIGNI 615
L EV + +F + ++ + +S + R++ KA + SG++ D + F SI N+
Sbjct: 114 LNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNV 173
Query: 616 II--RAALAESMMEP----YLRFLYTYVSISGPHLGYLYSSNSLFNSGLW 659
I R + E ++ P ++ +Y S P L LF + W
Sbjct: 174 IFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTW 223
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 559 LMSEVNEDKTYGDFREMGQRLAEEVISFVKRKMDKA---SRSGNLRDIMLSFVGHSIGNI 615
L EV + +F + ++ + +S + R++ KA + SG++ D + F SI N+
Sbjct: 111 LNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNV 170
Query: 616 II--RAALAESMMEP----YLRFLYTYVSISGPHLGYLYSSNSLFNSGLW 659
I R + E ++ P ++ +Y S P L LF + W
Sbjct: 171 IFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTW 220
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 555 KIEFLMSEVNEDKTYGDFR-EMGQRLAEEVISFVKRKMDKAS----RSGNLRDIMLSFVG 609
K E + E+NE T FR E G A + M+KA+ +S L +F G
Sbjct: 1747 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1806
Query: 610 HSIGNIIIRAALAESM 625
HS+G A+LA+ M
Sbjct: 1807 HSLGEYAALASLADVM 1822
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 555 KIEFLMSEVNEDKTYGDFR-EMGQRLAEEVISFVKRKMDKAS----RSGNLRDIMLSFVG 609
K E + E+NE T FR E G A + M+KA+ +S L +F G
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 610 HSIGNIIIRAALAESM 625
HS+G A+LA+ M
Sbjct: 1762 HSLGEYAALASLADVM 1777
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,305,032
Number of Sequences: 62578
Number of extensions: 876386
Number of successful extensions: 1706
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 13
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)