BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003674
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S+G IT++ +G +N+ + + P + I I MGG + N
Sbjct: 115 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGN---------------- 158
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
FT P AEFN+F DP AA VF SG+P+ ++ LD TN + T +
Sbjct: 159 --------FT-----PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 205
Query: 215 EES 217
E +
Sbjct: 206 ERA 208
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
ITL+ GPL+N+A + + I+E+ ++GG ++G TGN FT AEFN+F
Sbjct: 119 ITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG--AYG---TGN-FT----PSAEFNIF 168
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
DP AA+ VF S + + ++ L + + P ++ R+
Sbjct: 169 ADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 205
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S+G IT++ +G +N+ + + P + I I MGG + N
Sbjct: 118 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGN---------------- 161
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
FT P AEFN+F DP AA VF SG+P+ ++ LD TN + T +
Sbjct: 162 --------FT-----PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 208
Query: 215 EES 217
E +
Sbjct: 209 ERA 211
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
ITL+ GPL+N+A + + I+E+ ++GG ++G TGN FT AEFN+F
Sbjct: 122 ITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG--AYG---TGN-FT----PSAEFNIF 171
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
DP AA+ VF S + + ++ L + + P ++ R+
Sbjct: 172 ADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 208
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S+G IT++ +G +N+ + + P + I I MGG + N
Sbjct: 135 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGN---------------- 178
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
FT P AEFN+F DP AA VF SG+P+ ++ LD TN + T +
Sbjct: 179 --------FT-----PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 225
Query: 215 EES 217
E +
Sbjct: 226 ERA 228
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
ITL+ GPL+N+A + + I+E+ ++GG ++G TGN FT AEFN+F
Sbjct: 139 ITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG--AYG---TGN-FT----PSAEFNIF 188
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
DP AA+ VF S + + ++ L + + P ++ R+
Sbjct: 189 ADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARM 225
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 34/140 (24%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKISEG--PITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP+ + ++P + TA +++ + E P+T++ G TN+ + L +P L
Sbjct: 87 GLDGPALPEPT--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHS 143
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
I I MGG + N T P AEFN++ DP A
Sbjct: 144 KIARIVIMGGAMGLGNWT-----------------------------PAAEFNIYVDPEA 174
Query: 183 AYQVFHSGIPITLIPLDATN 202
A VF SGIP+ + LD T+
Sbjct: 175 AEIVFQSGIPVVMAGLDVTH 194
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 417 PVVFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATIDVIYDLLHMMGRDDV 476
P++ D D D +A+ L +P +++KAI S T+ + +L ++ R D+
Sbjct: 5 PILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 62
Query: 477 QVGLGDLFATNQSDPIDPSVGDCKYVKSIPHGCGGFLDSDTLYGLARDMPRSPRRYTAEN 536
V G + P + + ++ HG G D P P A
Sbjct: 63 PVAGG---------AVKPLMRELIIADNV-HGESGL-----------DGPALPEPTFAPQ 101
Query: 537 SVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATS 596
+ A+E+ T E +T+++ GP TN+A +L+S S
Sbjct: 102 NCT----------------AVELMAKTLR--ESAEPVTIVSTGPQTNVALLLNSHPELHS 143
Query: 597 LIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQ 656
I + I+GG + G+ AEFN+++DP AA+ VF+S + + + L V
Sbjct: 144 KIARIVIMGGAMGLGN----------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVT 193
Query: 657 RK 658
K
Sbjct: 194 HK 195
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 34/140 (24%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKISEG--PITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP+ + ++P + TA +++ + E P+T++ G TN+ + L +P L
Sbjct: 97 GLDGPALPEPT--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHS 153
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
I I MGG + N T P AEFN++ DP A
Sbjct: 154 KIARIVIMGGAMGLGNWT-----------------------------PAAEFNIYVDPEA 184
Query: 183 AYQVFHSGIPITLIPLDATN 202
A VF SGIP+ + LD T+
Sbjct: 185 AEIVFQSGIPVVMAGLDVTH 204
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 417 PVVFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATIDVIYDLLHMMGRDDV 476
P++ D D D +A+ L +P +++KAI S T+ + +L ++ R D+
Sbjct: 15 PILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 72
Query: 477 QVGLGDLFATNQSDPIDPSVGDCKYVKSIPHGCGGFLDSDTLYGLARDMPRSPRRYTAEN 536
V G + P + + ++ HG G D P P A
Sbjct: 73 PVAGG---------AVKPLMRELIIADNV-HGESGL-----------DGPALPEPTFAPQ 111
Query: 537 SVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATS 596
+ A+E+ T E +T+++ GP TN+A +L+S S
Sbjct: 112 NCT----------------AVELMAKTLR--ESAEPVTIVSTGPQTNVALLLNSHPELHS 153
Query: 597 LIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQ 656
I + I+GG + G+ AEFN+++DP AA+ VF+S + + + L V
Sbjct: 154 KIARIVIMGGAMGLGN----------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVT 203
Query: 657 RK 658
K
Sbjct: 204 HK 205
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 547 DHPELRQPLALEIWDSTTS--------------TLEPGSKITLLTNGPLTNLAKILSS-K 591
D P L P +E+WD + + K+T+ GPL+N+A +
Sbjct: 103 DMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYG 162
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESP 645
+ TS ++E I+GG + GNVF + AE+N++ DP +AKTVF P
Sbjct: 163 EKFTSKVEECVIMGGAVDV----RGNVFLPSTDGTAEWNIYWDPASAKTVFGCP 212
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMK-NPHLKKNIEHIYAMGGGVRSKN 138
E+ QQ+L D + SE +T+ + G +N+ + K +E MGG V +
Sbjct: 124 EKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVR- 182
Query: 139 PTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHS-GIPITLIP 197
GN+F +T+ AE+N++ DP +A VF G+ +
Sbjct: 183 ---------------------GNVFLP-STDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 220
Query: 198 LDATNTILVTKNFYKMFEESQNTYEAQYCFKSLKMARDTWL---NDQFYASYFMWDSFTS 254
LD+TNT+ V + + F E N + M L D +YA WD+ T+
Sbjct: 221 LDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCELLRDGDGYYA----WDALTA 276
Query: 255 G 255
Sbjct: 277 A 277
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 547 DHPELRQPLALEIWDSTTS--------------TLEPGSKITLLTNGPLTNLAKILSS-K 591
D P L P +E+WD + + K+T+ GPL+N+A +
Sbjct: 104 DMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYG 163
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESP 645
+ TS ++E I+GG + GNVF + AE+N++ DP +AKTVF P
Sbjct: 164 EKFTSKVEECVIMGGAVDV----RGNVFLPSTDGTAEWNIYWDPASAKTVFGCP 213
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMK-NPHLKKNIEHIYAMGGGVRSKN 138
E+ QQ+L D + SE +T+ + G +N+ + K +E MGG V +
Sbjct: 125 EKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVR- 183
Query: 139 PTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHS-GIPITLIP 197
GN+F +T+ AE+N++ DP +A VF G+ +
Sbjct: 184 ---------------------GNVFLP-STDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 221
Query: 198 LDATNTILVTKNFYKMFEESQN 219
LD+TNT+ V + + F E N
Sbjct: 222 LDSTNTVPVRSPYVQRFGEQTN 243
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 547 DHPELRQPLALEIWDSTTS--------------TLEPGSKITLLTNGPLTNLAKILSS-K 591
D P L P +E+WD + + K+T+ GPL+N+A +
Sbjct: 104 DMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYG 163
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESP 645
+ TS ++E I+GG + GNVF + AE+N++ DP +AKTVF P
Sbjct: 164 EKFTSKVEECVIMGGAVDV----RGNVFLPSTDGTAEWNIYWDPASAKTVFGCP 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMK-NPHLKKNIEHIYAMGGGVRSKN 138
E+ QQ+L D + SE +T+ + G +N+ + K +E MGG V +
Sbjct: 125 EKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVR- 183
Query: 139 PTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHS-GIPITLIP 197
GN+F +T+ AE+N++ DP +A VF G+ +
Sbjct: 184 ---------------------GNVFLP-STDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 221
Query: 198 LDATNTILVTKNFYKMFEESQNTYEAQYCFKSLKMARDTWL---NDQFYASYFMWDSFTS 254
LD+TNT+ V + + F E N + M L D +YA WD+ T+
Sbjct: 222 LDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCELLRDGDGYYA----WDALTA 277
Query: 255 G 255
Sbjct: 278 A 278
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 547 DHPELRQPLALEIWDSTTS--------------TLEPGSKITLLTNGPLTNLAKILSS-K 591
D P L P +E+WD + + K+T+ GPL+N+A +
Sbjct: 103 DMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYG 162
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESP 645
+ TS ++E I+GG + GNVF + AE+N++ DP +AKTVF P
Sbjct: 163 EKFTSKVEECVIMGGAVDV----RGNVFLPSTDGTAEWNIYWDPASAKTVFGCP 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMK-NPHLKKNIEHIYAMGGGVRSKN 138
E+ QQ+L D + SE +T+ + G +N+ + K +E MGG V +
Sbjct: 124 EKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVR- 182
Query: 139 PTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHS-GIPITLIP 197
GN+F +T+ AE+N++ DP +A VF G+ +
Sbjct: 183 ---------------------GNVFLP-STDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 220
Query: 198 LDATNTILVTKNFYKMFEESQN 219
LD+TNT+ V + + F E N
Sbjct: 221 LDSTNTVPVRSPYVQRFGEQTN 242
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 547 DHPELRQPLALEIWDSTTS--------------TLEPGSKITLLTNGPLTNLAKILSS-K 591
D P L P +E+WD + + K+T+ GPL+N+A +
Sbjct: 104 DMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYG 163
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESP 645
+ TS ++E I+GG + GNVF + AE+N++ DP +AKTVF P
Sbjct: 164 EKFTSKVEECVIMGGAVDV----RGNVFLPSTDGTAEWNIYWDPASAKTVFGCP 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMK-NPHLKKNIEHIYAMGGGVRSKN 138
E+ QQ+L D + SE +T+ + G +N+ + K +E MGG V +
Sbjct: 125 EKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVR- 183
Query: 139 PTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHS-GIPITLIP 197
GN+F +T+ AE+N++ DP +A VF G+ +
Sbjct: 184 ---------------------GNVFLP-STDGTAEWNIYWDPASAKTVFGCPGLRRIMFS 221
Query: 198 LDATNTILVTKNFYKMFEESQNTYEAQYCFKSLKMARDTWL---NDQFYASYFMWDSFTS 254
LD+TNT+ V + + F E N + M L D +YA WD+ T+
Sbjct: 222 LDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAMCTHCELLRDGDGYYA----WDALTA 277
Query: 255 G 255
Sbjct: 278 A 278
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 549 PELRQPL----ALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIV 604
PE + L A+++ + EP + ITL+ G LTN+A + + ++EV ++
Sbjct: 94 PEFKTKLDGRHAVQLIIDLIMSHEPKT-ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLM 152
Query: 605 GGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPK 664
GG TGN V AEFN+F+DP AA VF N+T++ L + + P
Sbjct: 153 GGGYH-----TGNASPV-----AEFNVFIDPEAAHIVFNESWNVTMVGLDLTHLALATPA 202
Query: 665 ILRRLCLKNKTPEA 678
+ +R+ P A
Sbjct: 203 VQKRVREVGTKPAA 216
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 41/197 (20%)
Query: 23 ILADVGGYLPIIEQGTTTTGYCRYRQAIPVGHAGRLEKDTNLGIRKEFLPQGSRRYSPLE 82
++ADV G + G C V +A + +T +G + P+ + L+
Sbjct: 51 LVADVAGIV-----GVPVAAGCTKPLVRGVRNASHIHGETGMG-NVSYPPEFKTK---LD 101
Query: 83 QLTAQQVLTDKI-SEGPITVILI--GAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNP 139
A Q++ D I S P T+ L+ G TN+ + + P + ++ + MGGG + N
Sbjct: 102 GRHAVQLIIDLIMSHEPKTITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHTGN- 160
Query: 140 TGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLD 199
+P AEFN+F DP AA+ VF+ +T++ LD
Sbjct: 161 ----------------------------ASPVAEFNVFIDPEAAHIVFNESWNVTMVGLD 192
Query: 200 ATNTILVTKNFYKMFEE 216
T+ L T K E
Sbjct: 193 LTHLALATPAVQKRVRE 209
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 66/244 (27%)
Query: 419 VFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATI---DVIYDLLHMMGRDD 475
+ D D + D L+L+ LLK ++V+ A TI ++ Y+ +
Sbjct: 5 IIDCDTAEDDVLSLYLLLKNNIDVV--------------AVTIVEGNISYE-------QE 43
Query: 476 VQVGLGDLFATNQSDPIDPSVGDCKYVKSIP----HGCGGFLDSDTLYGLARDMPRSPRR 531
V+ L L N+ P+ P I HG GG D+ P+R
Sbjct: 44 VKNALWALEQVNREIPVYPGANKPLLKNYITVEKVHGKGGI----------GDVTVEPKR 93
Query: 532 YTAENSVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSK 591
A+ + AL I D E ++ L PLTNLA
Sbjct: 94 LKAQ----------------EKHAALAIIDLAN---EYAGELEFLAISPLTNLALAYLLD 134
Query: 592 KNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLI 651
+ I++V+++GG + GN+ V AEFN+++DP AAK VF + +IT+I
Sbjct: 135 NSIVKKIKKVWVMGGAVF----GIGNITPV-----AEFNIWVDPDAAKIVFNAGFDITMI 185
Query: 652 PLGV 655
P V
Sbjct: 186 PWDV 189
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 28/104 (26%)
Query: 97 GPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQC 156
G + + I TN+ + + + + K I+ ++ MGG V
Sbjct: 114 GELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFG-------------------- 153
Query: 157 GDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDA 200
GN+ P AEFN++ DP AA VF++G IT+IP D
Sbjct: 154 --IGNI------TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDV 189
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 568 EPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYA 627
E ++ +L PLTN+A + +++++I+GG S G+ T P+ A
Sbjct: 111 EHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAFSKGN-------TTPI---A 160
Query: 628 EFNMFLDPLAAKTVFESPLNITLIPLGV 655
EFN ++DP AAK V ++ +IT++P V
Sbjct: 161 EFNFWVDPEAAKIVLDAGFDITIVPWEV 188
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 29/106 (27%)
Query: 96 EGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQ 155
EG + ++ I TN+ + +K+P + K ++ I+ MGG
Sbjct: 113 EGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGA---------------------- 150
Query: 156 CGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDAT 201
F+ T P AEFN + DP AA V +G IT++P +
Sbjct: 151 -------FSKGNTTPIAEFNFWVDPEAAKIVLDAGFDITIVPWEVA 189
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 568 EPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYA 627
EP + ITL+ G LTN+A + ++EV ++GG G+ A
Sbjct: 116 EPKT-ITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNA----------TSVA 164
Query: 628 EFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
EFN+ +DP AA VF +T++ L + + + P IL+R+
Sbjct: 165 EFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRV 206
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 99 ITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGD 158
IT++ G TN+ + P + ++ + MGGG N T
Sbjct: 120 ITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGNATSV---------------- 163
Query: 159 PGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEESQ 218
AEFN+ DP AA+ VF+ +T++ LD T+ L T + +E
Sbjct: 164 -------------AEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEV- 209
Query: 219 NTYEAQYCFKSLKMARDTWLNDQFYASYFMWD 250
+T A++ + + + ++++ A+ + D
Sbjct: 210 DTNPARFMLEIMDYYTKIYQSNRYMAAAAVHD 241
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 565 STLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLN 624
+ L+ K TLL GPLT+LA+ L + I+ + +GG R GNV +
Sbjct: 112 TLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTF----RTAGNVHEPEHD 167
Query: 625 KYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKV 659
AE+N F DP A V+E+ + I LI L +V
Sbjct: 168 GTAEWNSFWDPEAVARVWEANIEIDLITLESTNQV 202
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 53/208 (25%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
+E T++ G T++ L + P ++ I+ + MGG R+ + + P+
Sbjct: 116 TEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRT----------AGNVHEPE 165
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
G AE+N F DP A +V+ + I I LI L++TN + +T + + +
Sbjct: 166 HDGT-------------AEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQW 212
Query: 215 EESQNTYEAQY---CFKS----LKMARDTWLNDQFYASYFMWDSFTSGVAMSIMQHSHNH 267
+ + + C+ + A+++ +Y++WD T+
Sbjct: 213 AKERKYIGIDFLGQCYAIVPPLVHFAKNS--------TYYLWDVLTAAFV---------- 254
Query: 268 NGENEFAEMEYMNITVVTSNKPYGISDG 295
G+ + A+++ +N V T YG S G
Sbjct: 255 -GKADLAKVQTINSIVHT----YGPSQG 277
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 559 IWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRD 614
+WD ++PG LLT GP T + + NA S ++ + G + RD
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 559 IWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRD 614
+WD ++PG LLT GP T + + NA S ++ + G + RD
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420
>pdb|4F52|E Chain E, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|F Chain F, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 596
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 695 HYRYHHMEIFLGEILGAVALAG------------DNSLLKPTVQVKSIKVIAEG----NE 738
+ H+E+FL +V G DNSLL +++KS + +G
Sbjct: 316 QFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMT 375
Query: 739 YKDGQTVIDKNQGIFVRVIENLDPEAYYDLFANELNSKNQSAV 781
+T+ K+ + I LD + Y LF LN+ N S V
Sbjct: 376 LCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLNTSNHSGV 418
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 45 RYRQAIPVGHAGRLEKDTNLGIRKEFLPQGSRRYSPL 81
R+ IP+G A R++KDT R FLP+G+ Y L
Sbjct: 339 RFGDVIPMGLARRVKKDTKF--RDFFLPKGTEVYPML 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,666,031
Number of Sequences: 62578
Number of extensions: 1088740
Number of successful extensions: 2240
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2178
Number of HSP's gapped (non-prelim): 44
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)