BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003674
(804 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rihA PE=3 SV=1
Length = 312
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 34/140 (24%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP S ++P + +TA +++ KI S+ P+T++ G TN+ + L +P L
Sbjct: 86 GLDGPVLPDPS--FAP-QAMTAVELMALKIKQSQAPVTLVPTGPLTNIALLLATHPELHS 142
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
NIE I MGG N T P AEFN+F DP A
Sbjct: 143 NIEQIVLMGGAAGVGNWT-----------------------------PAAEFNIFVDPEA 173
Query: 183 AYQVFHSGIPITLIPLDATN 202
A VF +GIPIT+ LD T+
Sbjct: 174 ADMVFKAGIPITMCGLDVTH 193
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 571 SKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFN 630
+ +TL+ GPLTN+A +L++ S I+++ ++GG G+ AEFN
Sbjct: 117 APVTLVPTGPLTNIALLLATHPELHSNIEQIVLMGGAAGVGN----------WTPAAEFN 166
Query: 631 MFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL-CLKNKTPEAQFAQHLLSRLS 689
+F+DP AA VF++ + IT+ L V + + + R+ ++N P AQ LL
Sbjct: 167 IFVDPEAADMVFKAGIPITMCGLDVTHQAQVMDEDIARIRAIEN--PIAQCVADLLD--- 221
Query: 690 HLQQTHYRYHHMEI---FLGEILGAVALAGDNSLLKP---TVQVKSIKVIAEGNEYKDGQ 743
+ +H + F G L LLKP T Q + + +G E+ G
Sbjct: 222 -----FFILYHRDPKWGFTGAPLHDPCTIA--WLLKPELFTAQQAWVGIETKG-EHTQGM 273
Query: 744 TVIDK-----NQGIFVRVIENLDPEAYYDLFANELNSKNQ 778
TV+D+ NQ V+ ++D + DL A L + ++
Sbjct: 274 TVVDRYGLTGNQA-NATVLFDIDRAGFIDLLAQSLETYSR 312
>sp|B2U249|RIHC_SHIB3 Non-specific ribonucleoside hydrolase RihC OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rihC PE=3
SV=1
Length = 304
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+AL L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAL-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7LVN6|RIHC_ESCF3 Non-specific ribonucleoside hydrolase RihC OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rihC PE=3 SV=1
Length = 304
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 551 LRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSH 610
L QP L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 99 LEQPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPHIRRLVIMGGSAGR 155
Query: 611 GDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRLC 670
G+ AEFN+ DP AA VF S + I + L V + P L L
Sbjct: 156 GN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLGTLP 205
Query: 671 LKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP---TVQ 726
N+T ++ H +HYR M+ L L A+A L++P T++
Sbjct: 206 ELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLFTLK 250
Query: 727 VKSIKVIAEGNEYKDGQTVID 747
+ V +G E+ G TV+D
Sbjct: 251 PCFVAVETQG-EFTSGTTVVD 270
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 32/143 (22%)
Query: 80 PLEQLTAQQVLTDKISEGP--ITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSK 137
PLEQ A + D + P +T++ IG TN+ + L + P K +I + MGG
Sbjct: 98 PLEQ-PAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPHIRRLVIMGGSAGRG 156
Query: 138 NPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIP 197
N T P AEFN+ DP AA VF SGI I +
Sbjct: 157 NCT-----------------------------PNAEFNIAADPEAAACVFRSGIEIVMCG 187
Query: 198 LDATNTILVTKNFYKMFEESQNT 220
LD TN ++T ++ E T
Sbjct: 188 LDVTNQAILTPDYLGTLPELNRT 210
>sp|B1LFW0|RIHC_ECOSM Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rihC PE=3 SV=1
Length = 304
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 112/265 (42%), Gaps = 40/265 (15%)
Query: 520 GLARDMPRSPRRYTAENSVKYGAPRD---TDHPELRQPLALEIWDSTTSTLEPGSKITLL 576
G A + R+PR + + A D + L +P L I D+ EP +TL+
Sbjct: 65 GAAVPLVRAPRNAASVHGESGMAGYDFVEHNRSPLDKPAFLAIRDALMRAPEP---VTLV 121
Query: 577 TNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPL 636
GPLTN+A +LS I+ + I+GG G+ AEFN+ DP
Sbjct: 122 AIGPLTNIALLLSQCPECKQYIRRLVIMGGSAGRGN----------CTPNAEFNIAADPE 171
Query: 637 AAKTVFESPLNITLIPLGVQRKVSSFPKILRRLCLKNKTPEAQFAQHLLSRLSHLQQTHY 696
AA VF S + I + L V + P L L N+T ++ H +HY
Sbjct: 172 AAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRT----------GKMLHALFSHY 221
Query: 697 RYHHMEIFLG-EILGAVALAGDNSLLKP---TVQVKSIKVIAEGNEYKDGQTVIDKNQGI 752
R M+ L L A+A L++P T++ + V +G E+ G TV+D + +
Sbjct: 222 RSGSMQSGLRMHDLCAIAW-----LVRPDLFTLKPCFVAVETQG-EFTSGTTVVDIDGCL 275
Query: 753 F----VRVIENLDPEAYYDLFANEL 773
V+V +LD + + A L
Sbjct: 276 SKPANVQVALDLDVKGFQQWVAEVL 300
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K+ I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKQYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q8Z9M9|RIHC_SALTI Non-specific ribonucleoside hydrolase RihC OS=Salmonella typhi
GN=rihC PE=3 SV=1
Length = 306
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|B5RG86|RIHC_SALG2 Non-specific ribonucleoside hydrolase RihC OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=rihC PE=3 SV=1
Length = 306
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|B5R1P1|RIHC_SALEP Non-specific ribonucleoside hydrolase RihC OS=Salmonella
enteritidis PT4 (strain P125109) GN=rihC PE=3 SV=1
Length = 306
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|C0Q4J2|RIHC_SALPC Non-specific ribonucleoside hydrolase RihC OS=Salmonella paratyphi
C (strain RKS4594) GN=rihC PE=3 SV=1
Length = 306
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|Q57TL0|RIHC_SALCH Non-specific ribonucleoside hydrolase RihC OS=Salmonella
choleraesuis (strain SC-B67) GN=rihC PE=3 SV=1
Length = 306
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|Q1RGH2|RIHC_ECOUT Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain UTI89 / UPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|A1A778|RIHC_ECOK1 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O1:K1 / APEC GN=rihC PE=3 SV=1
Length = 304
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7MNN5|RIHC_ECO81 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli O81
(strain ED1a) GN=rihC PE=3 SV=1
Length = 304
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7MAF0|RIHC_ECO45 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q8EIM7|RIHA_SHEON Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
oneidensis (strain MR-1) GN=rihA PE=3 SV=1
Length = 318
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 44/168 (26%)
Query: 47 RQAIPV--GHAGRLEKDTNL--------GIRKEFLPQGSRRYSPLEQLTAQQVLTDKI-- 94
R IPV G A L +D + G+ LP S +SP + +TA +++ +I
Sbjct: 58 RSDIPVAGGAAKPLARDLIIADNVHGETGLDGPALPNPS--FSP-QAITAVELMAQQIRK 114
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S P+T+I G TN+ + L + L IE I MGG N T
Sbjct: 115 SHQPVTLIPTGPLTNIALLLASHSELHDKIERIVLMGGAAGVGNWT-------------- 160
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATN 202
P AEFN+F DP AA VF SGIPIT+ LD T+
Sbjct: 161 ---------------PAAEFNIFVDPEAADIVFKSGIPITMCGLDVTH 193
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
+TL+ GPLTN+A +L+S I+ + ++GG G+ AEFN+F
Sbjct: 119 VTLIPTGPLTNIALLLASHSELHDKIERIVLMGGAAGVGN----------WTPAAEFNIF 168
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
+DP AA VF+S + IT+ L V + + + R+
Sbjct: 169 VDPEAADIVFKSGIPITMCGLDVTHQAQIMDEDIERI 205
>sp|P0C0W2|RIHC_ECOL6 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rihC PE=3
SV=1
Length = 304
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q0TLW1|RIHC_ECOL5 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RQPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B5BLL5|RIHC_SALPK Non-specific ribonucleoside hydrolase RihC OS=Salmonella paratyphi
A (strain AKU_12601) GN=rihC PE=3 SV=1
Length = 304
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFISIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S + I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SGI I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDF 202
>sp|Q5PKI2|RIHC_SALPA Non-specific ribonucleoside hydrolase RihC OS=Salmonella paratyphi
A (strain ATCC 9150 / SARB42) GN=rihC PE=3 SV=1
Length = 304
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFISIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S + I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G EY G TV+D
Sbjct: 250 TLQSCFVAVETQG-EYTAGTTVVD 272
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SGI I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDF 202
>sp|B4TIF1|RIHC_SALHS Non-specific ribonucleoside hydrolase RihC OS=Salmonella heidelberg
(strain SL476) GN=rihC PE=3 SV=1
Length = 306
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|Q32K67|RIHC_SHIDS Non-specific ribonucleoside hydrolase RihC OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMCAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|P22564|RIHC_ECOLI Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain K12) GN=rihC PE=1 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B1XBF5|RIHC_ECODH Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain K12 / DH10B) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|C4ZPV6|RIHC_ECOBW Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7L4F2|RIHC_ECO55 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain 55989 / EAEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B6HYX8|RIHC_ECOSE Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
(strain SE11) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 554 PLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDR 613
P L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG G+
Sbjct: 102 PALLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGN- 157
Query: 614 DTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRLCLKN 673
AEFN+ DP AA VF S + I + L V + P L L N
Sbjct: 158 ---------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQLN 208
Query: 674 KTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP---TVQVKS 729
+T ++ H +HYR M+ L L A+A L++P T++
Sbjct: 209 RT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLFTLKPCF 253
Query: 730 IKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
+ V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 254 VAVETQG-EFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q83MH0|RIHC_SHIFL Non-specific ribonucleoside hydrolase RihC OS=Shigella flexneri
GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L++ P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLLQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +L I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLLQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
>sp|Q0T8G4|RIHC_SHIF8 Non-specific ribonucleoside hydrolase RihC OS=Shigella flexneri
serotype 5b (strain 8401) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L++ P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLLQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +L I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLLQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
>sp|Q8ZRY7|RIHC_SALTY Non-specific ribonucleoside hydrolase RihC OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rihC PE=3 SV=1
Length = 306
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|B4T6H8|RIHC_SALNS Non-specific ribonucleoside hydrolase RihC OS=Salmonella newport
(strain SL254) GN=rihC PE=3 SV=1
Length = 306
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|B5FHE5|RIHC_SALDC Non-specific ribonucleoside hydrolase RihC OS=Salmonella dublin
(strain CT_02021853) GN=rihC PE=3 SV=1
Length = 306
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|A7ZVX8|RIHC_ECOHS Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O9:H4 (strain HS) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7M0C6|RIHC_ECO8A Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli O8
(strain IAI1) GN=rihC PE=3 SV=1
Length = 304
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B5XWV7|RIHA_KLEP3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Klebsiella
pneumoniae (strain 342) GN=rihA PE=3 SV=1
Length = 311
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 568 EPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYA 627
E +TL+ GP TN+A +L+S + I + I+GG + G+ A
Sbjct: 114 ESQEPVTLVATGPQTNVALLLASHPELHAKIARIVIMGGAMGLGN----------WQPAA 163
Query: 628 EFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRLCLKNKTPEAQFAQHLLSR 687
EFN+F+DP AA+ VF+S + + + L V K P + R Q + +
Sbjct: 164 EFNIFVDPQAAEMVFQSGIPVVMAGLDVTHKAQILPADIERF--------RQIGNPVSTI 215
Query: 688 LSHLQQTHYRYHHMEI--FLGEILGAVALAGDNSLLKP---TVQVKSIKVIAEGNEYKDG 742
++ L YH E F G L LLKP T + + V EG +Y G
Sbjct: 216 VAELLDFFMAYHKDEKWGFDGAPLHDPCTIA--WLLKPEIFTTIERWVGVETEG-KYTQG 272
Query: 743 QTVIDKNQGIFVR----VIENLDPEAYYDLFANEL 773
TV+D R ++ ++D EA+ DL A L
Sbjct: 273 MTVVDYYHLTGNRPNTTLMLDVDREAFVDLLAQRL 307
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 29/125 (23%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S+ P+T++ G TN+ + L +P L I I MGG + N
Sbjct: 115 SQEPVTLVATGPQTNVALLLASHPELHAKIARIVIMGGAMGLGN---------------- 158
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
P AEFN+F DP AA VF SGIP+ + LD T+ + + F
Sbjct: 159 -------------WQPAAEFNIFVDPQAAEMVFQSGIPVVMAGLDVTHKAQILPADIERF 205
Query: 215 EESQN 219
+ N
Sbjct: 206 RQIGN 210
>sp|A3D0C6|RIHA_SHEB5 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) GN=rihA PE=3 SV=1
Length = 318
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 34/140 (24%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP+ S +SP + +TA +++ +I S P+T++ G TN+ + L + L
Sbjct: 86 GLDGPALPEPS--FSP-QAITAVELMAQQIRQSTQPVTLVPTGPLTNIALLLASHSELHP 142
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
IE I MGG N T P AEFN+F DP A
Sbjct: 143 KIERIVLMGGAAGVGNWT-----------------------------PAAEFNIFVDPEA 173
Query: 183 AYQVFHSGIPITLIPLDATN 202
A VF SGIPIT+ LD T+
Sbjct: 174 ADIVFKSGIPITMCGLDVTH 193
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
+TL+ GPLTN+A +L+S I+ + ++GG G+ AEFN+F
Sbjct: 119 VTLVPTGPLTNIALLLASHSELHPKIERIVLMGGAAGVGN----------WTPAAEFNIF 168
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL-CLKNKTPEAQFAQHLL 685
+DP AA VF+S + IT+ L V + + + R+ + N P AQ LL
Sbjct: 169 VDPEAADIVFKSGIPITMCGLDVTHQAQIMDEDIERIRAIPN--PIAQCVAELL 220
>sp|A6WSI3|RIHA_SHEB8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
baltica (strain OS185) GN=rihA PE=3 SV=1
Length = 318
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 34/140 (24%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP+ S +SP + +TA +++ +I S P+T++ G TN+ + L + L
Sbjct: 86 GLDGPALPEPS--FSP-QAITAVELMAQQIRQSTQPVTLVPTGPLTNIALLLASHSELHP 142
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
IE I MGG N T P AEFN+F DP A
Sbjct: 143 KIERIVLMGGAAGVGNWT-----------------------------PAAEFNIFVDPEA 173
Query: 183 AYQVFHSGIPITLIPLDATN 202
A VF SGIPIT+ LD T+
Sbjct: 174 ADIVFKSGIPITMCGLDVTH 193
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
+TL+ GPLTN+A +L+S I+ + ++GG G+ AEFN+F
Sbjct: 119 VTLVPTGPLTNIALLLASHSELHPKIERIVLMGGAAGVGN----------WTPAAEFNIF 168
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL-CLKNKTPEAQFAQHLL 685
+DP AA VF+S + IT+ L V + + + R+ + N P AQ LL
Sbjct: 169 VDPEAADIVFKSGIPITMCGLDVTHQAQIMDEDIERIRAIPN--PIAQCVAELL 220
>sp|B7NHD4|RIHC_ECO7I Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ +DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAVDPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAVDPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|A7ZHB9|RIHC_ECO24 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|A9MYH1|RIHC_SALPB Non-specific ribonucleoside hydrolase RihC OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=rihC PE=3 SV=1
Length = 306
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIHRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S L I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLN 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIHRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SG+ I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDF 202
>sp|B5YYC2|RIHC_ECO5E Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q8XA41|RIHC_ECO57 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O157:H7 GN=rihC PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLS 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPQLNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ +
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q3Z5Y0|RIHC_SHISS Non-specific ribonucleoside hydrolase RihC OS=Shigella sonnei
(strain Ss046) GN=rihC PE=3 SV=1
Length = 304
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 554 PLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDR 613
P L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG G+
Sbjct: 102 PAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSSGRGN- 157
Query: 614 DTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRLCLKN 673
AEFN+ DP AA VF S + I + L V + P L L N
Sbjct: 158 ---------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELN 208
Query: 674 KTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP---TVQVKS 729
+T ++ H +HYR M+ L L A+A L++P T++
Sbjct: 209 RT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLFTLKPCF 253
Query: 730 IKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
+ V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 254 VAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSSGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|A6T9S2|RIHA_KLEP7 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rihA PE=3 SV=1
Length = 311
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 143/369 (38%), Gaps = 71/369 (19%)
Query: 414 LGKPVVFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATIDVIYDLLHMMGR 473
+ P++ D D D +AL L +P + +KA+ S T+ + +L ++ R
Sbjct: 1 MALPIMIDCDPGHDDAIALVLALASPE--LEVKAVTASAGNQTPEKTLRNVLRMLTLLNR 58
Query: 474 DDVQVGLGDLFATNQSDPIDPSVGDCKYVKSIPHGCGGFLDSDTLYGLARDMPRSPRRYT 533
D+ V G P + D ++ HG G D P P
Sbjct: 59 PDIPVAGGAW---------KPLMRDLIIADNV-HGESGL-----------DGPSLPE--- 94
Query: 534 AENSVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKN 593
AP++ EL + E +S +TL+ GP TN+A +L+S
Sbjct: 95 -----PAFAPQNCTAVELMASVLRESQES----------VTLVATGPQTNVALLLASHPE 139
Query: 594 ATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPL 653
+ I + I+GG + G+ AEFN+++DP AA+ VF+S + + + L
Sbjct: 140 LHAKIARIVIMGGAMGLGNWQPA----------AEFNIYVDPQAAEMVFQSGIPVVMAGL 189
Query: 654 GVQRKVSSFPKILRRLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEI--FLGEILGA 711
V + P + R Q + + ++ L YH E F G L
Sbjct: 190 DVTHRAQILPADIERF--------RQIGNPVSTIVAELLDFFMAYHKDEKWGFDGAPLHD 241
Query: 712 VALAGDNSLLKP---TVQVKSIKVIAEGNEYKDGQTVIDKNQGIFVR----VIENLDPEA 764
LLKP T + + V EG +Y G TV+D R ++ ++D EA
Sbjct: 242 PCTIA--WLLKPEIFTTIERWVGVETEG-KYTQGMTVVDYYHLTGNRPNTTLMLDVDREA 298
Query: 765 YYDLFANEL 773
+ DL A L
Sbjct: 299 FVDLLAQRL 307
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 29/125 (23%)
Query: 95 SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQ 154
S+ +T++ G TN+ + L +P L I I MGG + N
Sbjct: 115 SQESVTLVATGPQTNVALLLASHPELHAKIARIVIMGGAMGLGN---------------- 158
Query: 155 QCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMF 214
P AEFN++ DP AA VF SGIP+ + LD T+ + + F
Sbjct: 159 -------------WQPAAEFNIYVDPQAAEMVFQSGIPVVMAGLDVTHRAQILPADIERF 205
Query: 215 EESQN 219
+ N
Sbjct: 206 RQIGN 210
>sp|B7UI75|RIHC_ECO27 Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAASCVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAASCVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|B7N7Q4|RIHC_ECOLU Non-specific ribonucleoside hydrolase RihC OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rihC PE=3 SV=1
Length = 304
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPDLF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T++ + V +G E+ G TV+D
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVD 270
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|Q326J3|RIHC_SHIBS Non-specific ribonucleoside hydrolase RihC OS=Shigella boydii
serotype 4 (strain Sb227) GN=rihC PE=3 SV=1
Length = 304
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
R+PL L I D+ EP +TL+ GPLTN+A +LS I+ + I+GG
Sbjct: 96 RKPLGIPAFLAIRDALMRAPEP---VTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGS 152
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ DP AA VF S + I + L V + P L
Sbjct: 153 AGRGN----------CTPNAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLA 202
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L N+T ++ H +HYR M+ L L A+A L++P
Sbjct: 203 TLPELNRT----------GKMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 247
Query: 724 TVQVKSIKVIAEGNEYKDGQTVIDKNQGIF----VRVIENLDPEAYYDLFANEL 773
T++ + V +G E+ G TV+D + + V+V +LD + + A L
Sbjct: 248 TLKPCFVAVETQG-EFTSGTTVVDIDGCLGKPANVKVALDLDVKGFQQWVAEVL 300
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + L + P K I + MGG N T
Sbjct: 117 PVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCT----------------- 159
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNFYKMFEES 217
P AEFN+ DP AA VF SGI I + LD TN ++T ++ E
Sbjct: 160 ------------PNAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLATLPEL 207
Query: 218 QNT 220
T
Sbjct: 208 NRT 210
>sp|A0L0Y0|RIHA_SHESA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp.
(strain ANA-3) GN=rihA PE=3 SV=1
Length = 318
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 31/123 (25%)
Query: 82 EQLTAQQVLTDKI--SEGPITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNP 139
+ + A +++ +KI S+ P+T++ G TN+ + L + L IE I MGG N
Sbjct: 100 QAVNAVELMAEKIRQSDKPVTLVPTGPLTNIALLLASHAELHAKIERIVLMGGAAGVGNW 159
Query: 140 TGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLD 199
T P AEFN+F DP AA VF SGIPIT+ LD
Sbjct: 160 T-----------------------------PAAEFNIFVDPEAADIVFKSGIPITMCGLD 190
Query: 200 ATN 202
T+
Sbjct: 191 VTH 193
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 573 ITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMF 632
+TL+ GPLTN+A +L+S + I+ + ++GG G+ AEFN+F
Sbjct: 119 VTLVPTGPLTNIALLLASHAELHAKIERIVLMGGAAGVGN----------WTPAAEFNIF 168
Query: 633 LDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILRRL 669
+DP AA VF+S + IT+ L V + + + R+
Sbjct: 169 VDPEAADIVFKSGIPITMCGLDVTHQAQIMDEDIERI 205
>sp|A8AJF8|RIHA_CITK8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rihA PE=3 SV=1
Length = 312
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 34/157 (21%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKISEGP--ITVILIGAHTNMGIFLMKNPHLKK 122
G+ LP+ S ++P + TA +++ + E P +T++ G TN+ + L +P L +
Sbjct: 86 GLDGPALPEPS--FAP-QTCTAVELMAKTLRESPEPVTIVATGPQTNVALLLNSHPELHR 142
Query: 123 NIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFA 182
I I MGG + N T P AEFN++ DP A
Sbjct: 143 KIARIVIMGGAMGLGNWT-----------------------------PAAEFNIYVDPEA 173
Query: 183 AYQVFHSGIPITLIPLDATNTILVTKNFYKMFEESQN 219
A VF SGIP+ + LD T+ + + F + N
Sbjct: 174 AEIVFQSGIPVVMAGLDVTHKAQIHAEDTERFRATGN 210
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 140/369 (37%), Gaps = 71/369 (19%)
Query: 414 LGKPVVFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATIDVIYDLLHMMGR 473
+ PV+FD D D +A+ L +P +++KAI S T+ + +L ++GR
Sbjct: 1 MALPVLFDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPDKTLRNVLRMLTLLGR 58
Query: 474 DDVQVGLGDLFATNQSDPIDPSVGDCKYVKSIPHGCGGFLDSDTLYGLARDMPRSPRRYT 533
+D+ V G I P + D ++ HG G D P P
Sbjct: 59 NDIPVAGG---------AIKPLMRDLIIADNV-HGESGL-----------DGPALPEPSF 97
Query: 534 AENSVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKN 593
A + A+E+ T E +T++ GP TN+A +L+S
Sbjct: 98 APQTCT----------------AVELMAKTLR--ESPEPVTIVATGPQTNVALLLNSHPE 139
Query: 594 ATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPL 653
I + I+GG + G+ AEFN+++DP AA+ VF+S + + + L
Sbjct: 140 LHRKIARIVIMGGAMGLGN----------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 654 GVQRKVSSFPKILRRLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEI--FLGEILGA 711
V K + R P + LL YH E F G L
Sbjct: 190 DVTHKAQIHAEDTERF-RATGNPVSTIVAELLDFF-------LEYHKDEKWGFTGAPLHD 241
Query: 712 VALAGDNSLLKP---TVQVKSIKVIAEGNEYKDGQTVID----KNQGIFVRVIENLDPEA 764
LLKP T + + V +G +Y G TV+D V+ ++D +
Sbjct: 242 PCTIA--WLLKPELFTTVERWVGVETQG-KYTQGMTVVDYYFLTGNKPNATVMVDIDRQG 298
Query: 765 YYDLFANEL 773
+ DL A L
Sbjct: 299 FVDLLAERL 307
>sp|B5F731|RIHC_SALA4 Non-specific ribonucleoside hydrolase RihC OS=Salmonella agona
(strain SL483) GN=rihC PE=3 SV=1
Length = 306
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I+ + ++GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ FT AEFN+ +DP AA VF S + I + L V + P L
Sbjct: 155 AGRGN------FT----PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDFLS 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
+L N+T ++ H HYR M + L A+A L++P
Sbjct: 205 KLPALNRT----------GKMLHSLFNHYRSGSMRTGVRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SGI I + LD TN +++ +F
Sbjct: 162 ------------PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAMLSPDF 202
>sp|B4TWP3|RIHC_SALSV Non-specific ribonucleoside hydrolase RihC OS=Salmonella
schwarzengrund (strain CVM19633) GN=rihC PE=3 SV=1
Length = 306
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 552 RQPLA----LEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKNATSLIQEVYIVGGH 607
RQPLA + I D + EP +TL+ GPLTN+A +L I + I+GG
Sbjct: 98 RQPLAKPAFIAIRDVLMNAPEP---MTLVAIGPLTNIALLLMHYPECRFNIHRLVIMGGS 154
Query: 608 LSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPLGVQRKVSSFPKILR 667
G+ AEFN+ +DP AA VF S + I + L V + P+ L
Sbjct: 155 AGRGN----------FTPNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAVLTPEYLA 204
Query: 668 RLCLKNKTPEAQFAQHLLSRLSHLQQTHYRYHHMEIFLG-EILGAVALAGDNSLLKP--- 723
L NKT + H +HYR M+ L L A+A L++P
Sbjct: 205 TLPALNKT----------GGMLHALFSHYRSGSMQSGLRMHDLCAIAW-----LVRPELF 249
Query: 724 TVQVKSIKVIAEGNEYKDGQTVID 747
T+Q + V +G +Y G TV+D
Sbjct: 250 TLQSCFVAVETQG-QYTAGTTVVD 272
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 98 PITVILIGAHTNMGIFLMKNPHLKKNIEHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCG 157
P+T++ IG TN+ + LM P + NI + MGG N T
Sbjct: 119 PMTLVAIGPLTNIALLLMHYPECRFNIHRLVIMGGSAGRGNFT----------------- 161
Query: 158 DPGNLFTDYTTNPYAEFNMFGDPFAAYQVFHSGIPITLIPLDATNTILVTKNF 210
P AEFN+ DP AA VF SGI I + LD TN ++T +
Sbjct: 162 ------------PNAEFNIAVDPEAAAHVFRSGIEIVMCGLDVTNQAVLTPEY 202
>sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Photobacterium
profundum GN=rihA PE=3 SV=1
Length = 310
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 109/272 (40%), Gaps = 52/272 (19%)
Query: 414 LGKPVVFDMDMSVGDFLALFYLLKAPVEVINLKAILVSPTGWANAATIDVIYDLLHMMGR 473
+ +P++ D D D +AL +P +++KA+ S T+ +L ++GR
Sbjct: 1 MSRPIIIDCDPGHDDAIALILACASPE--LDIKAVTTSAGNQTPEKTLHNALRILTLVGR 58
Query: 474 DDVQVGLGDLFATNQSDPIDPSVGDCKYVKSIPHGCGGFLDSDTLYGLARDMPRSPRRYT 533
D+ V G L ++ I +V HG G D P P
Sbjct: 59 TDIPVAGGALQPLSRELIIADNV----------HGETGL-----------DGPVLPE--- 94
Query: 534 AENSVKYGAPRDTDHPELRQPLALEIWDSTTSTLEPGSKITLLTNGPLTNLAKILSSKKN 593
P+ EL + T EP +TL+ GPLTN+A +L++ +
Sbjct: 95 -----PAFEPQPCHAVELMAKI-------LTEATEP---VTLVPTGPLTNIALLLATHRE 139
Query: 594 ATSLIQEVYIVGGHLSHGDRDTGNVFTVPLNKYAEFNMFLDPLAAKTVFESPLNITLIPL 653
S I + ++GG G+ AEFN+++DP AA VF+S + IT+ L
Sbjct: 140 LHSQIDSIVLMGGSAEAGN----------WTPAAEFNIYVDPEAADIVFKSGIPITMCGL 189
Query: 654 GVQRKVSSFPKILRRLCLKNKTPEAQFAQHLL 685
V + + + ++ K P AQ LL
Sbjct: 190 DVTHRAQIMDEDIEKI-RKINNPVAQVTAELL 220
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 65 GIRKEFLPQGSRRYSPLEQLTAQQVLTDKISEGPITVILIGAHTNMGIFLMKNPHLKKNI 124
G+ LP+ + P + + + +E P+T++ G TN+ + L + L I
Sbjct: 86 GLDGPVLPEPAFEPQPCHAVELMAKILTEATE-PVTLVPTGPLTNIALLLATHRELHSQI 144
Query: 125 EHIYAMGGGVRSKNPTGCCPKNSSSSCRPQQCGDPGNLFTDYTTNPYAEFNMFGDPFAAY 184
+ I MGG + N T P AEFN++ DP AA
Sbjct: 145 DSIVLMGGSAEAGNWT-----------------------------PAAEFNIYVDPEAAD 175
Query: 185 QVFHSGIPITLIPLDATN 202
VF SGIPIT+ LD T+
Sbjct: 176 IVFKSGIPITMCGLDVTH 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,258,445
Number of Sequences: 539616
Number of extensions: 14494947
Number of successful extensions: 31195
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 30659
Number of HSP's gapped (non-prelim): 409
length of query: 804
length of database: 191,569,459
effective HSP length: 126
effective length of query: 678
effective length of database: 123,577,843
effective search space: 83785777554
effective search space used: 83785777554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)