Query 003676
Match_columns 804
No_of_seqs 244 out of 1031
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:39:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003676.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1727-1731//hhsearch_pdb/003676hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1288.0 74.0 719 85-804 40-759 (759)
2 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1196.0 64.6 692 104-804 1-760 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 671.3 34.7 358 446-804 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 601.5 38.3 372 85-462 13-397 (410)
5 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 567.6 39.0 351 96-446 2-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 548.4 29.8 347 96-445 5-364 (364)
7 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 520.3 28.3 341 102-446 13-381 (391)
8 2do7_A Cullin-4B, CUL-4B; heli 1.0 1 1 199.1 8.1 93 712-804 3-95 (101)
9 1iuy_A Cullin-3 homologue; win 1.0 1 1 185.5 4.0 86 719-804 5-92 (92)
10 3o2p_E Cell division control p 1.0 1 1 179.4 8.2 81 723-804 6-88 (88)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1288.02 Aligned_cols=719 Identities=59% Similarity=0.960 Sum_probs=694.0
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86226605999999997318988999999999998329997638999999975323684269999999999999999997
Q 003676 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIR 164 (804)
Q Consensus 85 ~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~L~~~i~~~l~~~~~ 164 (804)
++|++|||||+.|.+|++|++++|..|++||++|+++++++.+||+||+.||++|++++|++||++|++.|++|+...+.
T Consensus 40 ~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~ 119 (759)
T 2hye_C 40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQIL 119 (759)
T ss_dssp -CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66543158887889996218889999999999998379988879999999999994377999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 55318995899999999999999999999999641303414313356454889999999997424600389999999999
Q 003676 165 SLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRM 244 (804)
Q Consensus 165 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~i~~~~~i~~~l~~~ll~l 244 (804)
.+.....+.+.||+.|..+|++|+.+|.+|++||+||||+|+.++++.++||++|+.+||++|+..+.+.++++++++.+
T Consensus 120 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l 199 (759)
T 2hye_C 120 PFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL 199 (759)
T ss_dssp HHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 98755688799999999999999999999999998737087627999886999999999999715776899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99881699479698999999985410446741786998889999999988621589135999999999999999732059
Q 003676 245 IERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 324 (804)
Q Consensus 245 I~~eR~g~~id~~lik~ii~ml~~L~iY~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yl~ 324 (804)
|+++|.|+.+|+.+++++++||++|++|.+.||++||++|.+||+.++++|++++++++|+++|+.+|++|.+||..||+
T Consensus 200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~ 279 (759)
T 2hye_C 200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279 (759)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99986689774899999999830152778998999999999999999999988499999999999999999999998538
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 67568999999999999999999997899823249978899999974002-40799999999999998424201831017
Q 003676 325 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDK 403 (804)
Q Consensus 325 ~~t~~~l~~~l~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yi~~~g~~iv~~~~~~~ 403 (804)
++|.++|.++|+++||.+|.+.|+++|+..||++++.++|++||+|++++ ++++.|+.+|++||++.|.+++.+.+++.
T Consensus 280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~ 359 (759)
T 2hye_C 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDK 359 (759)
T ss_dssp TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 63699999999999899999999996499998238799999999987527363899999999999997087753720278
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEE
Q ss_conf 89999999999899999984179688699999999998315898605799999989986289999978898200022012
Q 003676 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVL 483 (804)
Q Consensus 404 ~~V~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~iN~~~~k~~e~La~y~D~~lk~~~k~~~~~e~e~~l~~i~~l 483 (804)
.||+.|++++++++.++.+||++|+.|..++++||+.|+|.+.++++|+||+|||.+||+|.|+.+++|++..+++++.|
T Consensus 360 ~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~l 439 (759)
T 2hye_C 360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMIL 439 (759)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999986689889999999999999778997308999999999853678889888999999876446
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 44025836899999999997863999999599999999999871983268799999989998999999999764204999
Q 003676 484 FRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 563 (804)
Q Consensus 484 f~~i~~KD~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kle~M~~D~~~S~~l~~~f~~~~~~~~~~~ 563 (804)
|+|+++||+|+.+|+++||+|||.+++++.|+|+.||++||.+||.+||++|++||+|+..|++++..|+++..+ .+.+
T Consensus 440 f~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~ 518 (759)
T 2hye_C 440 FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDS 518 (759)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 530187999999999999998477999985999999999998847588999999998799989999999999853-4677
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHH
Q ss_conf 99527899851598899999886588678999999999997008970258405776479999965951899875989999
Q 003676 564 SGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVV 643 (804)
Q Consensus 564 ~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~lg~~~i~~~~~~~~~~l~vs~~Qa~I 643 (804)
.+++|+|.|||+++||.++..++.+|++|..+++.|++||..+|+||+|+|++++|+|+|+++|++|+++++||++||+|
T Consensus 519 ~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i 598 (759)
T 2hye_C 519 GPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV 598 (759)
T ss_dssp CCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCEEEEEECHHHHHH
T ss_conf 77744798847999999998888698999999999999998607997887015667589999967934999972999999
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCC
Q ss_conf 99670899877999999829999999999768311894004408999988999948980689998301760334543110
Q 003676 644 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETV 723 (804)
Q Consensus 644 Ll~Fn~~~~ls~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~~~~~d~f~~N~~F~~~~~kiki~~i~~ket~ 723 (804)
||+||+.+.+|+++|++.||+++++|+++|++|+|+|.+||.+.|+|+++.++|+|.+|.+|+++..||+||+++.+++.
T Consensus 599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCC
T ss_conf 99855899837999999979099999999999980577635117888879999989962256687647875662455541
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEC
Q ss_conf 01234347589856999999999983118889968899999986499999687999999976308324359999833617
Q 003676 724 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 803 (804)
Q Consensus 724 ~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~~~~Li~ev~~~lkF~~~~~~iKk~Ie~LIereyi~Rd~~d~~~y~Yi 803 (804)
+|++++.++|.+||++.||||||||||+||+|+|++|+.||++|++|+|++.+||+|||+|||||||+||++|+++|+|+
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~Yl 758 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYV 758 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEC
T ss_conf 23342687788889999999979998405777799999999998078999899999999874156565179998715744
Q ss_pred C
Q ss_conf 9
Q 003676 804 A 804 (804)
Q Consensus 804 a 804 (804)
|
T Consensus 759 A 759 (759)
T 2hye_C 759 A 759 (759)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1196.02 Aligned_cols=692 Identities=33% Similarity=0.558 Sum_probs=654.7
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCC---------------------------CHHHHHHHHHHHH
Q ss_conf 89889999999999983299-9763899999997532368---------------------------4269999999999
Q 003676 104 EEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLHK---------------------------MGGNLYQRIEKEC 155 (804)
Q Consensus 104 ~e~~W~~L~~aI~~I~~~~~-~~~s~e~LY~~Vy~lC~~k---------------------------~~e~LY~~L~~~i 155 (804)
+|++|..|++||++|+++++ +..+||+||++||++|+++ +|++||+++++.+
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 95059999999999986699987899999999999966875467876543221223555345674111899999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC-----CCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999975531899589999999999999999999999964130341431335-----64548899999999974246
Q 003676 156 EEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWDMGLQLFRKYLSSY 230 (804)
Q Consensus 156 ~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~-----~~~sI~~lgl~lFr~~i~~~ 230 (804)
++|+...+..+....+ +.||+.|..+|.+|+.++.+|++||+||||+||.++. ++++||++|+.+||++||.
T Consensus 81 ~~~l~~~~~~~~~~~~--e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~- 157 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMD--ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR- 157 (760)
T ss_dssp HHHHHHHHHTTCSCTT--TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT-
T ss_pred HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-
T ss_conf 9999999998751475--8999999999999999999988999886789873355346887661999999999999999-
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--------------HCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 003899999999999988169947969899999998541--------------044674178699888999999998862
Q 003676 231 SEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------------GIYSESFEKPFLECTSEFYAAEGMKYM 296 (804)
Q Consensus 231 ~~i~~~l~~~ll~lI~~eR~g~~id~~lik~ii~ml~~L--------------~iY~~~FE~~fL~~t~~yY~~~~~~~i 296 (804)
.+.++++++++.+|+++|.|+.||+.+|+++++||++| ++|.+.||++||++|.+||+.++++|+
T Consensus 158 -~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l 236 (760)
T 1ldj_A 158 -PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFL 236 (760)
T ss_dssp -TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999868998778999999999998376644321234442443898899999999999999999998
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-C
Q ss_conf 158913599999999999999973205967568999999999999999999997899823249978899999974002-4
Q 003676 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-N 375 (804)
Q Consensus 297 ~~~~~~eYL~~ve~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~L~~~~-~ 375 (804)
+++++++||++|+.+|++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||++++.+||++||+||+|+ +
T Consensus 237 ~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~-~~~~~ll~~~~~~dL~~my~L~~rv~~ 315 (760)
T 1ldj_A 237 QQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH-TEFQNLLDADKNEDLGRMYNLVSRIQD 315 (760)
T ss_dssp HHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH-HHHHHHHHSCCTTHHHHHHHHHHHSTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 7098999999999999999999998568736999999999999999999999-989999973888899999998674754
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-----
Q ss_conf 079999999999999842420183-----1017899999999998999999841796886999999999983158-----
Q 003676 376 ALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR----- 445 (804)
Q Consensus 376 ~l~~l~~~~~~yi~~~g~~iv~~~-----~~~~~~V~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~iN~~----- 445 (804)
|++.|+..|++||+..|.+++.+. ..+..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 316 gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~ 395 (760)
T 1ldj_A 316 GLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKM 395 (760)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 38999999999999987999987630334577999999999999999999997678689999999999998568854344
Q ss_pred ---CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf ---98605799999989986289999978898200022012440258368999999999978639999995999999999
Q 003676 446 ---QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISK 522 (804)
Q Consensus 446 ---~~k~~e~La~y~D~~lk~~~k~~~~~e~e~~l~~i~~lf~~i~~KD~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~ 522 (804)
..++||+||+|||.+||+|.|+.+++|++..+++++.||+|+++||+|+.+|+++||+|||.++|++.|+|+.||++
T Consensus 396 ~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~ 475 (760)
T 1ldj_A 396 AQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 475 (760)
T ss_dssp HTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 44443328999888699871788889788899999999999998088899999999999998457999984999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99871983268799999989998999999999764204999995278998515988999998865886789999999999
Q 003676 523 LKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEF 602 (804)
Q Consensus 523 Lk~~~G~~~t~kle~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~ 602 (804)
||.+||.+||++|++||+|+..|++++..|+++..+ +...+++|+|.|||+++||.++..++.+|++|..+++.|++|
T Consensus 476 Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~f 553 (760)
T 1ldj_A 476 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAF 553 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998858177999999999999999999999998740--457788705886489988999987875899999999999999
Q ss_pred HHHCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 97008970258405776479999965951899875989999996708998779999998299999999997683118940
Q 003676 603 YLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 682 (804)
Q Consensus 603 Y~~k~~~RkL~W~~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILl~Fn~~~~ls~~ei~~~t~i~~~~l~~~L~sL~~~k~~ 682 (804)
|..+|+||+|+|++++|+|+|+++|++++++++||++||+|||+||+.+.+|+++|++.||+++++|+++|++|+ +.+
T Consensus 554 Y~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~ 631 (760)
T 1ldj_A 554 YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSK 631 (760)
T ss_dssp TTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTT
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCC
T ss_conf 997479976887556561899999889359999759999999984699983799999997909999999999998--789
Q ss_pred EEEECC-----CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 044089-----999889999489806899983017603345431100123434758985699999999998311888996
Q 003676 683 VLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSH 757 (804)
Q Consensus 683 iL~~~~-----~~~~~~~~d~f~~N~~F~~~~~kiki~~i~~ket~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~~ 757 (804)
||.+.| +|+++.++|.|.+|.+|++++.||+||.+..+++.+|.+.+.+.|.+||++.||||||||||+||+|+|
T Consensus 632 iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h 711 (760)
T 1ldj_A 632 LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKH 711 (760)
T ss_dssp TEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEH
T ss_pred CCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEHHHHHCCCCCCH
T ss_conf 50227875444567799999899502555774279856731023413555478889997776700001013331477769
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
Q ss_conf 88999999864--999996879999999763083243599998336179
Q 003676 758 TLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 804 (804)
Q Consensus 758 ~~Li~ev~~~l--kF~~~~~~iKk~Ie~LIereyi~Rd~~d~~~y~Yia 804 (804)
++|+.||++|+ +|+|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 712 ~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 712 QQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
T ss_conf 9999999999855589998999999999862142331799986246379
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=671.34 Aligned_cols=358 Identities=33% Similarity=0.511 Sum_probs=328.9
Q ss_pred CCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9860579999998998628--99999788982000220124402583689999999999786399999959999999999
Q 003676 446 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKL 523 (804)
Q Consensus 446 ~~k~~e~La~y~D~~lk~~--~k~~~~~e~e~~l~~i~~lf~~i~~KD~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~L 523 (804)
.+++||+||+|||.+||+| .|+.+++|+|..|++++.||+|+++||+|+.+|+++||+|||.++|++.|+|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 987198--32687999999899989999999997642049999952789985159889999-988658867899999999
Q 003676 524 KTECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFK 600 (804)
Q Consensus 524 k~~~G~--~~t~kle~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~-~~~~~lP~~l~~~~~~F~ 600 (804)
| +||. +||++|++||+|+..|++++..|+++..+......+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHHCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99970089702584057764799999659518998759899999967089--9877999999829999999999768311
Q 003676 601 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLAC 678 (804)
Q Consensus 601 ~~Y~~k~~~RkL~W~~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILl~Fn~~--~~ls~~ei~~~t~i~~~~l~~~L~sL~~ 678 (804)
.||..+|+||+|+|+|++|+|+|++.+++|+++++||++||+|||+||+. +.+|+++|++.||+++++|+++|+||+|
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred -C--CCCEEEECCCC---CCCCCCCEEEEECCCCCC-----CCEEEECCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -8--94004408999---988999948980689998-----30176033454--31100123434758985699999999
Q 003676 679 -G--KVRVLQKLPKG---RDVEDDDSFVFNEGFTAP-----LYRIKVNAIQM--KETVEENTSTTERVFQDRQYQVDAAI 745 (804)
Q Consensus 679 -~--k~~iL~~~~~~---~~~~~~d~f~~N~~F~~~-----~~kiki~~i~~--ket~~e~~~~~~~v~~dR~~~i~AaI 745 (804)
+ |.+||.+.|++ +++.++|.|.+|.+|+++ .+|++|+.+.. .++..++++++++|.+||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
Q ss_conf 99831188899688999999864--999996879999999763083243599998336179
Q 003676 746 VRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 804 (804)
Q Consensus 746 VRIMK~rK~l~~~~Li~ev~~~l--kF~~~~~~iKk~Ie~LIereyi~Rd~~d~~~y~Yia 804 (804)
|||||+||+|+|++|+.||++|+ +|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 3133316756699999999999871589999999999999873203305999987378709
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=601.50 Aligned_cols=372 Identities=34% Similarity=0.608 Sum_probs=352.5
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 8622660599999999731898899999999999832999763899999997532368426999999999999999-999
Q 003676 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHIS-AAI 163 (804)
Q Consensus 85 ~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~L~~~i~~~l~-~~~ 163 (804)
+||++||||+ |++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+. .+.
T Consensus 13 ~~k~~i~~~~--~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~ 90 (410)
T 4ap2_B 13 DTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVR 90 (410)
T ss_dssp ----CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8715653799--99985579999999999999998468988889999999999996306999999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 75531899589999999999999999999999964130341431335645488999999999742460038999999999
Q 003676 164 RSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLR 243 (804)
Q Consensus 164 ~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~i~~~~~i~~~l~~~ll~ 243 (804)
..+....+ ..||+.+..+|++|+.++.+|++||+||||+|+.+++ .++||++|+.+||++||.++++.++++++++.
T Consensus 91 ~~l~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~-~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 167 (410)
T 4ap2_B 91 EDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 167 (410)
T ss_dssp HHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT-CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986485--7999999999999999998503799986378870489-98799999999999974226789999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9998816994796989999999854104-----46741786998889999999988621589135999999999999999
Q 003676 244 MIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHER 318 (804)
Q Consensus 244 lI~~eR~g~~id~~lik~ii~ml~~L~i-----Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r 318 (804)
+|+++|.|+.||+.+++++++||++||. |.+.||++||++|.+||+.++++|+++.++++||++|+.+|++|.+|
T Consensus 168 lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R 247 (410)
T 4ap2_B 168 MIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 247 (410)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99997499987989999999999981986077778998899999999999999999986098999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 7320596756899999999999999999999---7899823249978899999974002-40799999999999998424
Q 003676 319 CLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHG 394 (804)
Q Consensus 319 ~~~yl~~~t~~~l~~~l~~~LI~~~~~~ll~---~gl~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yi~~~g~~ 394 (804)
|..||+++|.++|.++++++||.+|.+.|++ +||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.+
T Consensus 248 ~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~ 327 (410)
T 4ap2_B 248 VMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKA 327 (410)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855860499999999999999999999871053289998679899999999998651231899999999999999899
Q ss_pred HHCCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 201831---01789999999999899999984179688699999999998315898605799999989986
Q 003676 395 IVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLR 462 (804)
Q Consensus 395 iv~~~~---~~~~~V~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~iN~~~~k~~e~La~y~D~~lk 462 (804)
++.+.+ .+..||+.||+++++|+.++.+||.+|+.|..++++||+.|+|.++ +.||+||+|||..-.
T Consensus 328 iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~spElla~y~D~~~~ 397 (410)
T 4ap2_B 328 LVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHHCCCCCC
T ss_conf 9846003467589999999999999999999848988999999999999875999-998999898168653
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=567.63 Aligned_cols=351 Identities=50% Similarity=0.821 Sum_probs=338.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999731898899999999999832999763899999997532368426999999999999999999755318995899
Q 003676 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVV 175 (804)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~ 175 (804)
+|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+...+.++.....+++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99998788997999999999999847999999999999999999668689999999999999999999999870366799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999964130341431335645488999999999742460038999999999999881699479
Q 003676 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (804)
Q Consensus 176 ~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~i~~~~~i~~~l~~~ll~lI~~eR~g~~id 255 (804)
||+.+..+|++|+.+|.+|++||+||||+|+.++++.++|+++|+.+||++|+.++++.++++++++.+|+++|.|+.||
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999988999862235671489999799999999999972557789999999999999982899777
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 69899999998541044674178699888999999998862158913599999999999999973205967568999999
Q 003676 256 RTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATA 335 (804)
Q Consensus 256 ~~lik~ii~ml~~L~iY~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yl~~~t~~~l~~~l 335 (804)
+.+|+++++||.+|++|.+.||++||++|.+||+.++++|+++.++++||++|+.+|++|.+||..||+++|.+++.+++
T Consensus 162 ~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~ 241 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 241 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999988455234799999999999999999999988719899999999999999999999867860489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999997899823249978899999974002-4079999999999999842420183101789999999999
Q 003676 336 ERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKA 414 (804)
Q Consensus 336 ~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yi~~~g~~iv~~~~~~~~~V~~ll~l~~ 414 (804)
+++||.+|.+.|+++|+..||++++.+||++||+|++|+ +|++.|+.+|++||++.|.+++.+++++..||+.||++++
T Consensus 242 e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~ 321 (354)
T 4a64_A 242 EKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKD 321 (354)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999879999877878899999999740666289999999999999989988196346799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999998417968869999999999831589
Q 003676 415 SLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (804)
Q Consensus 415 ~~~~li~~~F~~~~~f~~~l~~af~~~iN~~~ 446 (804)
+|+.++.+||++|+.|..++++||+.|+|.++
T Consensus 322 k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 322 KVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998869989999999999999828999
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=548.36 Aligned_cols=347 Identities=34% Similarity=0.632 Sum_probs=329.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHH
Q ss_conf 99999731898899999999999832999763899999997532368426999999999999999-99975531899589
Q 003676 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHIS-AAIRSLVGQSPDLV 174 (804)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~L~~~i~~~l~-~~~~~l~~~~~~~~ 174 (804)
+|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|++|+. .+...+....+ .
T Consensus 5 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~--~ 82 (364)
T 4eoz_B 5 PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLN--N 82 (364)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--S
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--H
T ss_conf 99998555998999999999999854888898999999999999641799999999999999999999999986485--8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999996413034143133564548899999999974246003899999999999988169947
Q 003676 175 VFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAV 254 (804)
Q Consensus 175 ~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~sI~~lgl~lFr~~i~~~~~i~~~l~~~ll~lI~~eR~g~~i 254 (804)
.||+.+..+|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++|+.++++.++++++++.+|+++|.|+.|
T Consensus 83 ~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~-~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~i 161 (364)
T 4eoz_B 83 NFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVV 161 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT-CCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999998999986268870489-9979999999999998057047899999999999998089987
Q ss_pred CHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 96989999999854104-----4674178699888999999998862158913599999999999999973205967568
Q 003676 255 DRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRK 329 (804)
Q Consensus 255 d~~lik~ii~ml~~L~i-----Y~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yl~~~t~~ 329 (804)
|+.+++++++||++||. |.+.||++||++|.+||+.++++|+++.++++||++|+.+|++|.+||..||+++|.+
T Consensus 162 d~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~ 241 (364)
T 4eoz_B 162 DRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEE 241 (364)
T ss_dssp CHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999998198617887898789999999999999999998719899999999999999999998757924288
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHCCCH---HH
Q ss_conf 99999999999999999999---7899823249978899999974002-40799999999999998424201831---01
Q 003676 330 PLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KD 402 (804)
Q Consensus 330 ~l~~~l~~~LI~~~~~~ll~---~gl~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yi~~~g~~iv~~~~---~~ 402 (804)
+|.++++++||.+|.+.|++ +||..||++++.+||++||+||+|+ +|++.|+.+|++||++.|.+++.+.+ .+
T Consensus 242 ~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~ 321 (364)
T 4eoz_B 242 PIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNP 321 (364)
T ss_dssp HHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999999999986000117998858979999999999841444289999999999999989997370044775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 7899999999998999999841796886999999999983158
Q 003676 403 KDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445 (804)
Q Consensus 403 ~~~V~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~iN~~ 445 (804)
..||+.||++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 322 ~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 322 VDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999999999980898999999999999960494
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=520.31 Aligned_cols=341 Identities=21% Similarity=0.363 Sum_probs=317.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3189889999999999983299-976389999999753236--8426999999999999999999755318995899999
Q 003676 102 NFEEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLH--KMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLS 178 (804)
Q Consensus 102 ~~~e~~W~~L~~aI~~I~~~~~-~~~s~e~LY~~Vy~lC~~--k~~e~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~~L~ 178 (804)
.+++++|..|++||++|+.+.+ +..+||+||++||++|++ ++|++||++|++.|++|+..++.++....+ ++.||+
T Consensus 13 ~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~-~e~~L~ 91 (391)
T 2wzk_A 13 LQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQD-DTALLK 91 (391)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 5699899999999999986799986789999999999992675244999999999999999999999985167-779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC-------CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999964130341431335-------64548899999999974246003899999999999988169
Q 003676 179 LVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-------NVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLG 251 (804)
Q Consensus 179 ~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~-------~~~sI~~lgl~lFr~~i~~~~~i~~~l~~~ll~lI~~eR~g 251 (804)
.|..+|.+|+.++.+|+++|+||||+||.+++ +.++|+++|+.+||++||. ++.++++++++.+|+++|.|
T Consensus 92 ~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~G 169 (391)
T 2wzk_A 92 AYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLG 169 (391)
T ss_dssp HHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998999999878987314411235788886999999999999999--99999999999999997489
Q ss_pred CCCCHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 947969899999998541--------044674178699888999999998862158913599999999999999973205
Q 003676 252 EAVDRTLLNHLLKMFTAL--------GIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYL 323 (804)
Q Consensus 252 ~~id~~lik~ii~ml~~L--------~iY~~~FE~~fL~~t~~yY~~~~~~~i~~~~~~eYL~~ve~~l~eE~~r~~~yl 323 (804)
+.||+++++++++||++| ++|.+.||++||++|.+||+.++++|+++.++++||++|+.+|++|.+||..||
T Consensus 170 e~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL 249 (391)
T 2wzk_A 170 EAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 249 (391)
T ss_dssp CCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98779999999999999746865557786799899999999999999999999849999999999999999999999873
Q ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9----67568999999999999999999997899823249978899999974002-407999999999999984242018
Q 003676 324 D----VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 398 (804)
Q Consensus 324 ~----~~t~~~l~~~l~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yi~~~g~~iv~~ 398 (804)
+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+|+ +|++.|+.+|++||++.|.+++.+
T Consensus 250 ~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~-~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~ 328 (391)
T 2wzk_A 250 ETRRECNSVEALMECCVNALVTSFKETILA-ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVA 328 (391)
T ss_dssp CCTTCCSHHHHHHHHHHHHHTGGGHHHHHT-THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 876774359999999999999999999999-8999987587999999999876374528999999999999997999970
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -----310178999999999989999998417968869999999999831589
Q 003676 399 -----EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (804)
Q Consensus 399 -----~~~~~~~V~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~iN~~~ 446 (804)
...+..||+.||++|++|+.++.+||++|+.|.+++++||+.|+|.++
T Consensus 329 ~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 329 AAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 10124478799999999999999999999829988999999999999968766
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=199.14 Aligned_cols=93 Identities=75% Similarity=1.124 Sum_probs=90.1
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 76033454311001234347589856999999999983118889968899999986499999687999999976308324
Q 003676 712 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLE 791 (804)
Q Consensus 712 iki~~i~~ket~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~~~~Li~ev~~~lkF~~~~~~iKk~Ie~LIereyi~ 791 (804)
|+||+++.+++.+|++++.+.|.+||.+.||||||||||+||+|+|++|+.+|+++++|+|++.+||++||.|||||||+
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYle 82 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME 82 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 23644113555688999999999999999999999997220205599999999998379999899999999986565774
Q ss_pred ECCCCCCCEEECC
Q ss_conf 3599998336179
Q 003676 792 RDKNNPQIYNYLA 804 (804)
Q Consensus 792 Rd~~d~~~y~Yia 804 (804)
||++|++.|+|+|
T Consensus 83 R~~~d~~~y~YlA 95 (101)
T 2do7_A 83 RDKENPNQYNYIA 95 (101)
T ss_dssp ECSSCTTEEEECC
T ss_pred CCCCCCCEEEEEC
T ss_conf 4899988388865
No 9
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=1.00 E-value=1 Score=185.50 Aligned_cols=86 Identities=45% Similarity=0.728 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 43110012343475898569999999999831188899688999999864--9999968799999997630832435999
Q 003676 719 MKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNN 796 (804)
Q Consensus 719 ~ket~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~~~~Li~ev~~~l--kF~~~~~~iKk~Ie~LIereyi~Rd~~d 796 (804)
.+++.+|++++.+.|.+||.+.||||||||||+||+|+|++|+.+|++++ +|+|++.+||++||+|||||||+||++|
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d 84 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 32468899999999999878773145540543023054999999999997077899989999999988655366258999
Q ss_pred CCCEEECC
Q ss_conf 98336179
Q 003676 797 PQIYNYLA 804 (804)
Q Consensus 797 ~~~y~Yia 804 (804)
++.|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T 1iuy_A 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCEEEECC
T ss_conf 87267529
No 10
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=1.00 E-value=1 Score=179.36 Aligned_cols=81 Identities=37% Similarity=0.611 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCEEECCCCCCCE
Q ss_conf 0012343475898569999999999831188899688999999864--99999687999999976308324359999833
Q 003676 723 VEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIY 800 (804)
Q Consensus 723 ~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~~~~Li~ev~~~l--kF~~~~~~iKk~Ie~LIereyi~Rd~~d~~~y 800 (804)
.+|+++|.+.+.+||.+.||||||||||+||+|+|++|+.+|++|+ +|+|++.+||++||+|||||||+|+++| +.|
T Consensus 6 ~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y 84 (88)
T 3o2p_E 6 LTEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESY 84 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEE
T ss_pred CCHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEE
T ss_conf 5528889999999766660023422211555144999999999998665899999999999999853577428999-867
Q ss_pred EECC
Q ss_conf 6179
Q 003676 801 NYLA 804 (804)
Q Consensus 801 ~Yia 804 (804)
+|+|
T Consensus 85 ~YlA 88 (88)
T 3o2p_E 85 AYLA 88 (88)
T ss_dssp EECC
T ss_pred EEEC
T ss_conf 7519
Done!