Query 003677
Match_columns 804
No_of_seqs 537 out of 5465
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:56:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003677.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1727-1731//hhsearch_pdb/003677hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 482.9 31.6 363 412-782 10-374 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 459.7 29.7 359 413-782 26-387 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 363.9 21.4 253 409-661 139-392 (405)
4 4b4t_K 26S protease regulatory 1.0 1 1 357.7 22.2 253 409-661 163-417 (428)
5 4b4t_I 26S protease regulatory 1.0 1 1 357.3 22.4 253 409-661 173-426 (437)
6 4b4t_H 26S protease regulatory 1.0 1 1 357.2 20.7 253 409-661 200-453 (467)
7 4b4t_L 26S protease subunit RP 1.0 1 1 355.0 22.5 253 409-661 172-425 (437)
8 4b4t_M 26S protease regulatory 1.0 1 1 354.6 21.0 253 409-661 172-425 (434)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 333.9 6.7 232 411-642 470-702 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 310.7 18.4 249 410-661 196-462 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=482.94 Aligned_cols=363 Identities=46% Similarity=0.718 Sum_probs=332.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf 76422347558536999999999850143001135764587189988899982478999763304634430221123443
Q 003677 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (804)
Q Consensus 412 ~~~~~f~~~~gl~~~v~~l~~iv~~~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~~~~y 491 (804)
.....|+++.|.++.+..+.+++.++.++..+.+++..+++|++|+||||||||+|+++++++++.+++.++++++...|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 21421357879999983499600056788863103777899940269999999985104567896189950599998894
Q 003677 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (804)
Q Consensus 492 vg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~~Ldp 571 (804)
+|.+..+++.+|+.+....|||+||||+|.+...++....++......+++.|+..|+++....+++||++||.++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCH
T ss_conf 34108899999999984599789985666542100466676768899999999999753378888899995687566363
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 35689853433347999988899999999802999871209999862899949999999999999999809997579999
Q 003677 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (804)
Q Consensus 572 aLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~edi 651 (804)
+++|||||++.|.+++|+.++|.+|++.+++..++..++++..++..++|++|+||.++|++|+..+.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHH
T ss_conf 31226753068615899989999999999972788605549999875579839999999999999999748982339999
Q ss_pred HHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCHH
Q ss_conf 9999999828533223--33102456779999999997617889875207971589886622765157311001347899
Q 003677 652 LQAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQ 729 (804)
Q Consensus 652 ~~Al~~~~~g~~~~~~--~~~~e~~~VA~hEaGhAIva~~l~~~~~i~kVTI~pr~g~alG~~~~~~p~~~~~~~~~tk~ 729 (804)
..|+.++..+ ..++. .++.+++.++|||+|||++++.+++.+++++++|.||+.+++||+++. | .++.+++|+.
T Consensus 250 ~~al~~v~~~-~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~-p--~~~~~~~~~~ 325 (476)
T 2ce7_A 250 EEAIDRVIAG-PARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHL-P--EEDKYLVSRN 325 (476)
T ss_dssp HHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC--------------------CCSCBHH
T ss_pred HHHHHHHHCC-CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEC-C--CCCCCCCCHH
T ss_conf 9999998557-4434303210010463799862478763147765435046605742004127876-7--3112326799
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999833498998882999765565521322345799987332111110
Q 003677 730 SLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLC 782 (804)
Q Consensus 730 ~ll~~I~v~LAGraAEei~~G~~~istGa~~Dl~~a~~~~~a~~~~~~~g~~~ 782 (804)
+++++|+++|||||||+++||+ +|||+++||++|| .+|+.|++.|||..
T Consensus 326 ~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at--~~a~~mv~~~gm~~ 374 (476)
T 2ce7_A 326 ELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERAT--EIARNMVCQLGMSE 374 (476)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHH--HHHHHHHHTSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHH--HHHHHHHHHHCCCC
T ss_conf 9999999987589999602379--7745078999999--99999999848887
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=459.74 Aligned_cols=359 Identities=48% Similarity=0.706 Sum_probs=325.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 64223475585369999999998501430011357645871899888999824789997633046344302211234432
Q 003677 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (804)
Q Consensus 413 ~~~~f~~~~gl~~~v~~l~~iv~~~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~~~~yv 492 (804)
+...|+++.|.++.+..+.+++..+.++..+.++++.+++|++|+||||||||+|+++++++++.+++.++++++...++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 99999981883999999999999830606554146878863899899998899999999887489879983368777642
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 14213578799999834996000567888631037778999402699999999851045678961899505999988943
Q 003677 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (804)
Q Consensus 493 g~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~~Ldpa 572 (804)
|.....++.+|+.+....|+++||||||.+...+......+......+++.++..|+++.....++++++||.|+.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHCCCC
T ss_conf 15899999999998715998899742988987424676787489999999999874146667618999956884543831
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 56898534333479999888999999998029998712099998628999499999999999999998099975799999
Q 003677 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (804)
Q Consensus 573 LlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~edi~ 652 (804)
++|||||++.|.+++|+..+|.+|++.+++...+.+++++..++..++|++|+||.++|++|+..+.+++...|+.+|+.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 25566145698528999999999999998269997688899999863899799999999999999998289865799999
Q ss_pred HHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCC-CCCCCCCHH
Q ss_conf 999999828533223--33102456779999999997617889875207971589886622765157311-001347899
Q 003677 653 QAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMK-FKEGMLSRQ 729 (804)
Q Consensus 653 ~Al~~~~~g~~~~~~--~~~~e~~~VA~hEaGhAIva~~l~~~~~i~kVTI~pr~g~alG~~~~~~p~~~-~~~~~~tk~ 729 (804)
.|++++..+ ..+.+ .++.+++.++|||+|||++++++++.+++++++|.|+ |+++||++ | . ++.+++|+.
T Consensus 266 ~al~~v~~~-~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr-~~~~g~~~---p--~q~~~~~~t~~ 338 (499)
T 2dhr_A 266 EAADRVMML-PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMM---P--RREDMLHWSRK 338 (499)
T ss_dssp HHHHHHTTC-SSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS-SCTTCSSH---H--HHTTCCCCCHH
T ss_pred HHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCCCCCCC---C--CHHHHHCCCHH
T ss_conf 999987236-44332112477776218999989999866578870667874047-77676003---4--14654304899
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999833498998882999765565521322345799987332111110
Q 003677 730 SLLDHITVQLAPRAADELWCGEGQVRKTLQHPLLFVGNVKLARRGTGILMMLC 782 (804)
Q Consensus 730 ~ll~~I~v~LAGraAEei~~G~~~istGa~~Dl~~a~~~~~a~~~~~~~g~~~ 782 (804)
+++++|+++||||+||+++||+ +|||+++||++|| .+|+.|++.|||..
T Consensus 339 ~l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at--~~a~~mv~~~gm~~ 387 (499)
T 2dhr_A 339 RLLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQAT--ELARRMITEWGMHP 387 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHH--HHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHH--HHHHHHHHHHCCCC
T ss_conf 9999999996437677863035--6766087999999--99999999838888
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=363.87 Aligned_cols=253 Identities=38% Similarity=0.660 Sum_probs=239.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
....+++.|+++.|+++++..+.+++.+ +.++.+|..+|...|+|+||+||||||||++++++|++++.+|+.++++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf 55799998888288899999999999998749999986799988825885899998789999999851888528886895
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
...|+|.....++.+|+.|+..+|||+||||||++++.+.....+++...+.+++.||..||++....+|+||+|||+|+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH
T ss_conf 11335468999999999998709946765334111157788899976899999999999604338888757881269814
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88943568985343334799998889999999980299987120999986289994999999999999999980999757
Q 003677 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 647 (804)
.|||+|+||||||+.|+|++|+.++|.+||+.|+++.++..++++..+|..|.||||+||.++|++|++.|+++++..|+
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt 378 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVT 378 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986998759
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999828
Q 003677 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||..|+.++...
T Consensus 379 ~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 379 QEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998572
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=357.69 Aligned_cols=253 Identities=37% Similarity=0.593 Sum_probs=237.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
....+++.|+++.|+++++..+.+.+.. +.++..|..+|...|+|+||+||||||||++++++|++++.+++.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 77899998888516999999999999998739999986799988658888989988899999999986799699933044
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
.+.|+|.....++.+|..++..+|||+||||+|.++..|.....+++.....+++.||..||++....+++||+|||+++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 31454605999999999999739974630022433035567878887189999999999843878779979999619815
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8894356898534333479-999888999999998029998712099998628999499999999999999998099975
Q 003677 568 ILDPALVRPGRFDRKIFIP-KPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEI 646 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~-~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~I 646 (804)
.|||+|+||||||+.|+|+ +|+..+|..||+.++++.++..++++..+|..|.||||+||.++|++|++.|+++++..|
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i 402 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 56966636875159998199999999999999985579999635899999777998899999999999999998799877
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 799999999999828
Q 003677 647 TTDDLLQAAQIEERG 661 (804)
Q Consensus 647 t~edi~~Al~~~~~g 661 (804)
+.+||..|+..+...
T Consensus 403 ~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 403 LQSDLEEAYATQVKT 417 (428)
T ss_dssp CHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999976176
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=357.34 Aligned_cols=253 Identities=38% Similarity=0.670 Sum_probs=239.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
....+++.|+++.|+++++..+.+.+.. +.++..|...|...|+|+||+||||||||++|+++|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 33689986005576999999999999998769999986799977788448899963999999999985998799887995
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
.+.|+|..+..++.+|+.++..+|||+||||+|+++..|.....++......+++.||..||++....+++||+|||+++
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 31447669999999999998659918987612220366778887765899999999999724767889979999579805
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88943568985343334799998889999999980299987120999986289994999999999999999980999757
Q 003677 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 647 (804)
.|||+|+||||||+.|+|++|+.++|.+||+.|+++..+..++++..+|..|.||||+||.++|++|++.|+++++..|+
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It 412 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBC
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984899669
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999828
Q 003677 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||..|++++..+
T Consensus 413 ~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 413 AEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999987079
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=357.25 Aligned_cols=253 Identities=37% Similarity=0.618 Sum_probs=239.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
.+..+++.|+++.|+++++..+.+.+.. +.++..|..+|+..|+|+||+||||||||+|++++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
.+.|+|.....++.+|..++..+|||+||||+|.++..|.....++......+++.+|..||++....+|+||+|||+++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 02667789999999999987617846752232110135567677862789999999999865557888379882878931
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88943568985343334799998889999999980299987120999986289994999999999999999980999757
Q 003677 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 647 (804)
.|||+|+||||||+.|+|++|+.++|.+||+.|++...+..++++..+|..|.||||+||.++|++|++.|+++++..|+
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it 439 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 439 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 17954636665507998389699999999999854899987779999997779999999999999999999983887669
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999828
Q 003677 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||..|++++..|
T Consensus 440 ~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 440 EKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999647
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=355.04 Aligned_cols=253 Identities=40% Similarity=0.675 Sum_probs=238.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
....+++.|+++.|+++++..+.+++.. +.++.+|..+|..+|+|+||+||||||||++++++|++++.+++.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 31599989667178599999999999998749999986798978769998999984999999999985999899841462
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
.+.|+|.....++.+|..++...|||+||||+|.++..|...+.+++.....+++.||..||++....+++||+|||+|+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 05520178999999999998638964642044333333344788753689999999999834666779869999339903
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88943568985343334799998889999999980299987120999986289994999999999999999980999757
Q 003677 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 647 (804)
.|||+|+||||||+.|+|++|+.++|.+||+.|+++.....++++..+|..|.||||+||.++|++|++.|+++++..|+
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986998779
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999828
Q 003677 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||..|+.++...
T Consensus 412 ~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 412 PDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998750
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=354.58 Aligned_cols=253 Identities=38% Similarity=0.652 Sum_probs=237.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 3467642234755853699999999985-014300113576458718998889998247899976330463443022112
Q 003677 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (804)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~ 487 (804)
....+...|+++.|+++++..+.+.+.. +.++..|.+.|...|+|+||+||||||||++++++|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 68897998676095799999999999999749999986799988726877949998899999999995998899864464
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34432142135787999998349960005678886310377789994026999999998510456789618995059999
Q 003677 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (804)
Q Consensus 488 ~~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~ 567 (804)
...|+|.....++.+|..++...|||+||||+|.++..|.....++......+++.||..||++....+|+||+|||+|+
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 31345638999999999998619908960332566522577888874699999999999713668889989999489922
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88943568985343334799998889999999980299987120999986289994999999999999999980999757
Q 003677 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (804)
Q Consensus 568 ~LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 647 (804)
.|||+|+||||||+.|+|++|+.++|.+||+.++++.....++++..+|..|.||||+||.++|++|++.|+++++..|+
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~ 411 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVK 411 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred HCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 33996715774038998089599999999999856899987679999998689989999999999999999986998769
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999828
Q 003677 648 TDDLLQAAQIEERG 661 (804)
Q Consensus 648 ~edi~~Al~~~~~g 661 (804)
.+||..|+..+...
T Consensus 412 ~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 412 HEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999997377
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=333.94 Aligned_cols=232 Identities=41% Similarity=0.743 Sum_probs=215.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 67642234755853699999999985-01430011357645871899888999824789997633046344302211234
Q 003677 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (804)
Q Consensus 411 ~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~~~ 489 (804)
..+.+.|+++.|+++++..+.+++.+ +.++..|.+.|...++|+||+||||||||++++++|++++.+++.++.+++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf 57887888817889999999999975666899997148888860798668778963999999998389668742411210
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 43214213578799999834996000567888631037778999402699999999851045678961899505999988
Q 003677 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (804)
Q Consensus 490 ~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~~L 569 (804)
.|+|..+..++.+|+.|+...|||+||||||++++.|+....+++...+.++++||.+||++....+|+||++||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHC
T ss_conf 33436899999999999972996352042567763158888898669999999999997487877998999937980438
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9435689853433347999988899999999802999871209999862899949999999999999999809
Q 003677 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (804)
Q Consensus 570 dpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 642 (804)
||+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|..|.||||+||.++|++|++.|+++.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9847177855079997996999999999998567999877899999976899999999999999999999999
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=310.68 Aligned_cols=249 Identities=41% Similarity=0.673 Sum_probs=227.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHH
Q ss_conf 467642234755853699999999985-0143001135764587189988899982478999763304634430221123
Q 003677 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (804)
Q Consensus 410 ~~~~~~~f~~~~gl~~~v~~l~~iv~~-~~~~~~~~~~gl~i~~giLL~Gp~GtGKTtLakaLA~el~~~~i~is~s~~~ 488 (804)
...+.+.|+++.|+++.+..+++++.. +.++.+|..+|...|+|+||+||||||||+|++++|++++.+++.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 45899990351499999999999999875198988635899997589779899988999999999719839999737954
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 44321421357879999983499600056788863103777899940269999999985104567896189950599998
Q 003677 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (804)
Q Consensus 489 ~~yvg~~~~~i~~lfe~a~~~~p~Il~IDEId~l~~~r~~~~~sgge~~~~~L~~LL~~ld~~~~~~~viVIatTN~~~~ 568 (804)
+.|+|.....++.+|+.|+...||||||||||.+++.+.. +.++..+.++++|+..||++....+|+||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf 3331678999999999999729929998510023344577---8873999999999999746666698799996698032
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC------
Q ss_conf 89435689853433347999988899999999802999871209999862899949999999999999999809------
Q 003677 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------ 642 (804)
Q Consensus 569 LdpaLlrpgRfd~~I~i~~Pd~~eR~~Il~~~l~~~~~~~~vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~------ 642 (804)
+||+|+|||||++.|+++.|+..+|.+||+.+++......++++..+|..|.||+++||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69888578636168866897989999999998568998864389999975689989999999999999999841451200
Q ss_pred -----------CCCCCHHHHHHHHHHHHCC
Q ss_conf -----------9975799999999999828
Q 003677 643 -----------RTEITTDDLLQAAQIEERG 661 (804)
Q Consensus 643 -----------~~~It~edi~~Al~~~~~g 661 (804)
...++.+||..|+..+...
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred CCCCCCHHHHCCCEEEHHHHHHHHHHCCCC
T ss_conf 013320455225565199999999728783
Done!