Query 003678
Match_columns 804
No_of_seqs 456 out of 2773
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 8.2E-51 1.8E-55 428.3 74.6 685 75-804 4-698 (698)
2 COG1196 Smc Chromosome segrega 99.8 1.6E-12 3.6E-17 156.8 80.5 110 83-193 172-286 (1163)
3 KOG0161 Myosin class II heavy 99.8 2.6E-11 5.7E-16 144.8 86.1 36 292-327 1079-1114(1930)
4 KOG0161 Myosin class II heavy 99.8 2.8E-11 6E-16 144.6 84.6 225 84-327 856-1086(1930)
5 TIGR02169 SMC_prok_A chromosom 99.8 1.5E-11 3.3E-16 152.8 84.9 20 91-111 171-190 (1164)
6 TIGR02168 SMC_prok_B chromosom 99.8 5.1E-11 1.1E-15 148.6 89.9 108 85-193 167-279 (1179)
7 TIGR00606 rad50 rad50. This fa 99.8 3E-10 6.5E-15 139.2 85.2 167 376-545 696-862 (1311)
8 TIGR02169 SMC_prok_A chromosom 99.8 4.1E-10 8.9E-15 140.1 88.3 106 85-193 172-277 (1164)
9 TIGR02168 SMC_prok_B chromosom 99.7 9.9E-10 2.1E-14 137.2 84.4 34 80-113 172-205 (1179)
10 KOG4674 Uncharacterized conser 99.7 1.2E-08 2.6E-13 120.2 83.6 173 507-679 1155-1341(1822)
11 PF10174 Cast: RIM-binding pro 99.7 1.8E-09 3.9E-14 120.2 68.9 135 230-364 123-261 (775)
12 TIGR00606 rad50 rad50. This fa 99.7 2E-08 4.2E-13 123.5 83.8 96 224-319 573-669 (1311)
13 PRK02224 chromosome segregatio 99.7 1.1E-08 2.4E-13 122.2 79.6 43 230-272 260-302 (880)
14 KOG0996 Structural maintenance 99.7 1.5E-08 3.2E-13 112.6 78.5 199 506-705 807-1009(1293)
15 PF10174 Cast: RIM-binding pro 99.6 1.8E-08 3.9E-13 112.4 70.4 39 155-194 55-93 (775)
16 PRK02224 chromosome segregatio 99.6 4.5E-09 9.7E-14 125.6 70.9 21 479-499 472-492 (880)
17 KOG4674 Uncharacterized conser 99.6 7.8E-08 1.7E-12 113.6 81.8 80 230-317 907-986 (1822)
18 KOG0933 Structural maintenance 99.6 4.1E-08 8.9E-13 107.3 70.4 135 228-372 329-472 (1174)
19 COG1196 Smc Chromosome segrega 99.6 1.7E-07 3.8E-12 113.8 87.0 37 232-268 299-335 (1163)
20 PRK03918 chromosome segregatio 99.6 9.1E-08 2E-12 114.7 74.6 14 786-799 814-827 (880)
21 KOG0320 Predicted E3 ubiquitin 99.6 9E-16 1.9E-20 132.0 2.6 55 749-804 131-187 (187)
22 KOG0996 Structural maintenance 99.5 1.7E-07 3.7E-12 104.5 72.4 146 579-725 862-1008(1293)
23 PLN03208 E3 ubiquitin-protein 99.4 1.2E-13 2.5E-18 123.8 4.1 56 748-803 17-87 (193)
24 PF01576 Myosin_tail_1: Myosin 99.4 1.1E-13 2.4E-18 159.3 0.0 54 518-571 573-626 (859)
25 PF15227 zf-C3HC4_4: zinc fing 99.4 6.1E-13 1.3E-17 89.1 3.5 39 752-790 1-42 (42)
26 PF01576 Myosin_tail_1: Myosin 99.3 1.4E-13 3.1E-18 158.4 0.0 58 83-143 56-113 (859)
27 smart00504 Ubox Modified RING 99.3 8.4E-13 1.8E-17 100.0 3.9 53 750-803 2-54 (63)
28 KOG0317 Predicted E3 ubiquitin 99.3 7.8E-13 1.7E-17 124.0 3.3 55 748-803 238-292 (293)
29 KOG0823 Predicted E3 ubiquitin 99.3 1.1E-12 2.3E-17 119.4 3.1 55 749-803 47-103 (230)
30 KOG0964 Structural maintenance 99.3 6E-06 1.3E-10 90.5 69.8 268 86-363 173-468 (1200)
31 KOG0287 Postreplication repair 99.3 4.8E-13 1E-17 126.6 -0.0 56 748-804 22-77 (442)
32 TIGR00599 rad18 DNA repair pro 99.3 1.8E-12 4E-17 131.9 3.5 60 743-803 20-79 (397)
33 PRK04863 mukB cell division pr 99.3 2.3E-05 5E-10 95.1 82.0 117 74-192 285-408 (1486)
34 PF13923 zf-C3HC4_2: Zinc fing 99.3 3.1E-12 6.6E-17 85.2 3.0 38 752-790 1-39 (39)
35 COG5432 RAD18 RING-finger-cont 99.2 1.9E-12 4.1E-17 119.7 1.7 57 745-802 21-77 (391)
36 PRK01156 chromosome segregatio 99.2 2.9E-05 6.3E-10 93.0 74.1 8 388-395 422-429 (895)
37 KOG2164 Predicted E3 ubiquitin 99.2 4.8E-12 1E-16 128.5 2.6 56 749-804 186-245 (513)
38 PF04564 U-box: U-box domain; 99.2 8.2E-12 1.8E-16 96.4 2.7 55 749-803 4-58 (73)
39 PF13920 zf-C3HC4_3: Zinc fing 99.2 1.9E-11 4.1E-16 86.7 3.5 45 750-795 3-48 (50)
40 PF14835 zf-RING_6: zf-RING of 99.2 4.2E-12 9.2E-17 89.7 -0.1 52 748-802 6-58 (65)
41 KOG0978 E3 ubiquitin ligase in 99.1 2.9E-05 6.2E-10 84.6 75.2 74 122-195 52-125 (698)
42 PF12128 DUF3584: Protein of u 99.1 9.5E-05 2.1E-09 90.3 79.5 36 237-272 354-389 (1201)
43 PF13639 zf-RING_2: Ring finge 99.1 3.8E-11 8.3E-16 82.6 1.7 40 751-791 2-44 (44)
44 PF00097 zf-C3HC4: Zinc finger 99.1 1.2E-10 2.6E-15 79.0 3.3 39 752-790 1-41 (41)
45 PHA02926 zinc finger-like prot 99.0 1.1E-10 2.5E-15 105.0 3.8 54 749-802 170-237 (242)
46 PF13445 zf-RING_UBOX: RING-ty 99.0 1E-10 2.2E-15 77.9 2.2 36 752-788 1-43 (43)
47 PHA02929 N1R/p28-like protein; 99.0 1.5E-10 3.3E-15 109.5 4.2 47 749-796 174-228 (238)
48 PF14634 zf-RING_5: zinc-RING 99.0 1.9E-10 4.2E-15 78.7 3.0 41 751-792 1-44 (44)
49 KOG0976 Rho/Rac1-interacting s 99.0 0.00013 2.9E-09 78.2 64.0 26 768-793 632-657 (1265)
50 PF00261 Tropomyosin: Tropomyo 98.9 3.5E-06 7.5E-11 82.6 31.1 206 517-722 27-232 (237)
51 cd00162 RING RING-finger (Real 98.9 8E-10 1.7E-14 77.4 3.5 44 751-794 1-45 (45)
52 KOG0933 Structural maintenance 98.9 0.00031 6.7E-09 78.0 72.1 151 526-676 787-937 (1174)
53 smart00184 RING Ring finger. E 98.9 1.4E-09 2.9E-14 73.5 3.2 39 752-790 1-39 (39)
54 COG5574 PEX10 RING-finger-cont 98.8 1.4E-09 3E-14 101.0 2.4 51 749-799 215-266 (271)
55 KOG4643 Uncharacterized coiled 98.8 0.00062 1.3E-08 75.6 60.8 72 288-367 256-327 (1195)
56 PF05701 WEMBL: Weak chloropla 98.8 0.00063 1.4E-08 75.0 58.5 12 710-721 409-420 (522)
57 KOG0250 DNA repair protein RAD 98.8 0.00087 1.9E-08 75.9 64.1 27 762-789 987-1014(1074)
58 KOG0994 Extracellular matrix g 98.8 0.0009 1.9E-08 75.0 61.7 24 249-272 1267-1290(1758)
59 KOG0250 DNA repair protein RAD 98.8 0.001 2.2E-08 75.4 71.5 22 4-25 152-173 (1074)
60 COG1579 Zn-ribbon protein, pos 98.7 1.1E-05 2.4E-10 76.4 25.6 13 783-795 220-232 (239)
61 PRK04778 septation ring format 98.7 0.001 2.2E-08 74.6 53.6 33 286-318 102-134 (569)
62 KOG0971 Microtubule-associated 98.7 0.00082 1.8E-08 73.6 42.5 20 344-363 227-246 (1243)
63 PF07888 CALCOCO1: Calcium bin 98.7 0.00065 1.4E-08 72.3 46.5 42 685-726 415-456 (546)
64 PF05701 WEMBL: Weak chloropla 98.7 0.00096 2.1E-08 73.6 62.3 76 233-308 114-191 (522)
65 PF00261 Tropomyosin: Tropomyo 98.7 3.3E-05 7.2E-10 75.7 29.3 197 517-727 20-216 (237)
66 KOG0018 Structural maintenance 98.7 0.0017 3.6E-08 73.2 64.1 47 228-274 303-349 (1141)
67 PF07888 CALCOCO1: Calcium bin 98.7 0.0011 2.3E-08 70.7 43.0 45 688-732 411-455 (546)
68 KOG4172 Predicted E3 ubiquitin 98.6 4.7E-09 1E-13 70.3 -0.0 46 750-795 8-54 (62)
69 PF06160 EzrA: Septation ring 98.6 0.0018 4E-08 72.2 54.0 111 541-651 307-420 (560)
70 KOG0824 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 95.1 1.9 48 750-797 8-55 (324)
71 KOG0976 Rho/Rac1-interacting s 98.6 0.0022 4.7E-08 69.3 58.3 78 522-599 326-403 (1265)
72 KOG0977 Nuclear envelope prote 98.6 0.0011 2.4E-08 70.6 37.1 26 399-424 56-81 (546)
73 KOG0994 Extracellular matrix g 98.6 0.0032 6.9E-08 70.9 59.1 96 91-193 1198-1293(1758)
74 KOG0962 DNA repair protein RAD 98.5 0.0051 1.1E-07 71.8 57.2 66 705-779 635-700 (1294)
75 COG5152 Uncharacterized conser 98.5 2.3E-08 4.9E-13 87.6 1.0 45 750-795 197-241 (259)
76 KOG0311 Predicted E3 ubiquitin 98.5 1E-08 2.2E-13 99.2 -1.9 52 746-797 40-92 (381)
77 PRK04778 septation ring format 98.5 0.0051 1.1E-07 69.1 53.9 41 380-420 196-237 (569)
78 PF12678 zf-rbx1: RING-H2 zinc 98.5 1E-07 2.3E-12 73.2 3.1 40 751-791 21-73 (73)
79 PF05557 MAD: Mitotic checkpoi 98.5 3.6E-07 7.8E-12 105.4 8.8 24 709-732 607-630 (722)
80 KOG0962 DNA repair protein RAD 98.4 0.0097 2.1E-07 69.6 69.1 101 511-611 825-928 (1294)
81 PF05557 MAD: Mitotic checkpoi 98.4 2.7E-06 5.8E-11 98.3 14.6 15 767-781 684-701 (722)
82 PF00038 Filament: Intermediat 98.4 0.0041 8.8E-08 64.6 40.7 29 292-320 7-35 (312)
83 KOG0977 Nuclear envelope prote 98.4 0.0035 7.7E-08 66.9 35.5 34 710-748 351-384 (546)
84 COG5243 HRD1 HRD ubiquitin lig 98.4 4.6E-07 9.9E-12 87.9 6.2 46 749-795 287-345 (491)
85 KOG4673 Transcription factor T 98.4 0.006 1.3E-07 65.0 58.7 58 479-536 577-636 (961)
86 KOG1813 Predicted E3 ubiquitin 98.3 1.5E-07 3.2E-12 89.0 1.0 45 750-795 242-286 (313)
87 PF11789 zf-Nse: Zinc-finger o 98.3 3.5E-07 7.5E-12 65.7 2.5 44 748-791 10-55 (57)
88 COG5540 RING-finger-containing 98.3 3.2E-07 7E-12 86.5 2.6 47 749-795 323-372 (374)
89 TIGR00570 cdk7 CDK-activating 98.3 3.9E-07 8.3E-12 89.1 3.2 38 766-803 25-62 (309)
90 KOG4643 Uncharacterized coiled 98.3 0.014 3.1E-07 65.3 59.5 33 286-318 305-337 (1195)
91 PF05483 SCP-1: Synaptonemal c 98.3 0.01 2.2E-07 63.6 86.3 6 51-56 45-50 (786)
92 PF04641 Rtf2: Rtf2 RING-finge 98.3 5.8E-07 1.3E-11 89.1 3.7 56 746-803 110-169 (260)
93 KOG2879 Predicted E3 ubiquitin 98.2 7.7E-07 1.7E-11 83.2 2.9 46 750-795 240-287 (298)
94 KOG2177 Predicted E3 ubiquitin 98.2 5E-07 1.1E-11 97.0 1.8 45 747-792 11-55 (386)
95 PF14447 Prok-RING_4: Prokaryo 98.2 7.3E-07 1.6E-11 61.3 1.7 48 749-799 7-54 (55)
96 KOG0802 E3 ubiquitin ligase [P 98.2 5.6E-07 1.2E-11 99.6 1.8 48 750-798 292-344 (543)
97 PF00038 Filament: Intermediat 98.2 0.014 3.1E-07 60.6 40.8 8 739-746 295-302 (312)
98 PRK04863 mukB cell division pr 98.2 0.052 1.1E-06 66.9 81.6 179 80-274 300-481 (1486)
99 KOG4265 Predicted E3 ubiquitin 98.2 7.9E-07 1.7E-11 87.3 1.9 47 749-796 290-337 (349)
100 KOG1785 Tyrosine kinase negati 98.1 7E-07 1.5E-11 87.3 1.4 48 751-798 371-419 (563)
101 KOG4159 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 90.4 2.4 49 747-796 82-130 (398)
102 KOG2660 Locus-specific chromos 98.1 6.6E-07 1.4E-11 86.6 0.6 53 745-798 11-64 (331)
103 PF09726 Macoilin: Transmembra 98.1 0.0057 1.2E-07 69.0 30.9 72 660-731 588-659 (697)
104 KOG4628 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 85.8 2.6 46 750-795 230-278 (348)
105 KOG4275 Predicted E3 ubiquitin 98.0 4.6E-07 9.9E-12 85.0 -1.9 42 750-796 301-343 (350)
106 PHA02562 46 endonuclease subun 98.0 0.0064 1.4E-07 69.2 31.3 64 643-706 335-398 (562)
107 KOG0964 Structural maintenance 98.0 0.043 9.3E-07 61.5 73.8 10 770-779 1104-1113(1200)
108 PRK11637 AmiB activator; Provi 98.0 0.013 2.9E-07 63.5 31.6 18 479-496 44-61 (428)
109 PHA02562 46 endonuclease subun 98.0 0.0085 1.8E-07 68.2 30.8 9 786-794 498-506 (562)
110 PF12861 zf-Apc11: Anaphase-pr 98.0 4.8E-06 1E-10 63.9 2.7 47 750-796 22-83 (85)
111 COG5222 Uncharacterized conser 97.9 3.2E-06 7E-11 79.4 1.7 43 750-792 275-318 (427)
112 KOG3039 Uncharacterized conser 97.9 5.5E-06 1.2E-10 75.8 3.0 53 749-802 221-277 (303)
113 PF05622 HOOK: HOOK protein; 97.9 2.2E-06 4.7E-11 98.8 0.0 13 783-795 692-704 (713)
114 KOG0825 PHD Zn-finger protein 97.9 2.1E-06 4.6E-11 91.3 -0.7 51 750-801 124-177 (1134)
115 PF14662 CCDC155: Coiled-coil 97.9 0.018 4E-07 52.0 27.2 22 521-542 10-31 (193)
116 PF06160 EzrA: Septation ring 97.9 0.082 1.8E-06 59.2 56.5 34 285-318 97-130 (560)
117 KOG1002 Nucleotide excision re 97.9 4.9E-06 1.1E-10 84.6 1.5 52 747-798 534-589 (791)
118 KOG4593 Mitotic checkpoint pro 97.8 0.074 1.6E-06 57.8 70.2 21 710-730 602-622 (716)
119 KOG1003 Actin filament-coating 97.8 0.021 4.6E-07 51.4 26.9 116 604-719 82-197 (205)
120 PF15070 GOLGA2L5: Putative go 97.8 0.098 2.1E-06 58.4 49.4 39 157-195 26-64 (617)
121 PF05622 HOOK: HOOK protein; 97.8 4.2E-06 9E-11 96.4 0.0 21 762-782 657-677 (713)
122 KOG4673 Transcription factor T 97.8 0.081 1.7E-06 56.9 68.9 38 236-273 447-484 (961)
123 PF09726 Macoilin: Transmembra 97.8 0.055 1.2E-06 61.3 31.8 12 44-55 162-173 (697)
124 COG5220 TFB3 Cdk activating ki 97.7 5.5E-06 1.2E-10 75.4 -0.5 49 750-798 11-67 (314)
125 PF05667 DUF812: Protein of un 97.7 0.14 3.1E-06 56.8 33.5 71 427-500 349-419 (594)
126 KOG0297 TNF receptor-associate 97.7 1.9E-05 4.1E-10 83.1 2.2 53 746-799 18-71 (391)
127 COG1340 Uncharacterized archae 97.7 0.072 1.6E-06 52.2 34.6 18 528-545 57-74 (294)
128 COG1579 Zn-ribbon protein, pos 97.6 0.039 8.4E-07 52.8 23.5 31 750-780 198-232 (239)
129 KOG1039 Predicted E3 ubiquitin 97.6 2.2E-05 4.8E-10 79.0 1.9 48 749-796 161-222 (344)
130 PF05667 DUF812: Protein of un 97.6 0.22 4.7E-06 55.4 33.9 16 442-457 329-344 (594)
131 KOG0946 ER-Golgi vesicle-tethe 97.5 0.23 5.1E-06 54.8 31.2 32 700-731 910-941 (970)
132 KOG1571 Predicted E3 ubiquitin 97.5 2.3E-05 4.9E-10 77.3 0.2 43 750-796 306-348 (355)
133 KOG0828 Predicted E3 ubiquitin 97.5 4.4E-05 9.6E-10 77.4 1.8 48 749-796 571-635 (636)
134 KOG1029 Endocytic adaptor prot 97.5 0.26 5.7E-06 53.9 33.0 36 664-699 547-582 (1118)
135 KOG0804 Cytoplasmic Zn-finger 97.4 5.3E-05 1.2E-09 76.3 1.5 45 748-795 174-222 (493)
136 PF14570 zf-RING_4: RING/Ubox 97.4 0.00011 2.3E-09 49.8 2.5 44 752-795 1-48 (48)
137 COG5194 APC11 Component of SCF 97.4 0.00014 3E-09 53.8 2.9 49 750-799 32-85 (88)
138 KOG0826 Predicted E3 ubiquitin 97.3 4.9E-05 1.1E-09 73.3 -0.0 53 750-803 301-354 (357)
139 COG4372 Uncharacterized protei 97.3 0.23 4.9E-06 49.7 32.1 45 553-597 129-173 (499)
140 KOG0963 Transcription factor/C 97.3 0.36 7.9E-06 52.0 40.5 18 712-729 401-418 (629)
141 KOG4692 Predicted E3 ubiquitin 97.3 0.00014 3E-09 70.5 2.3 45 750-795 423-467 (489)
142 KOG0995 Centromere-associated 97.3 0.38 8.2E-06 51.4 45.9 63 435-500 295-357 (581)
143 PRK09039 hypothetical protein; 97.2 0.11 2.4E-06 53.9 23.1 48 527-574 47-94 (343)
144 COG4372 Uncharacterized protei 97.2 0.3 6.4E-06 49.0 31.1 146 551-696 113-261 (499)
145 PF15070 GOLGA2L5: Putative go 97.2 0.6 1.3E-05 52.3 50.7 15 442-456 123-137 (617)
146 KOG0018 Structural maintenance 97.2 0.75 1.6E-05 52.9 64.1 44 229-272 235-278 (1141)
147 KOG1003 Actin filament-coating 97.1 0.19 4E-06 45.6 26.6 82 650-731 107-188 (205)
148 KOG0995 Centromere-associated 97.1 0.51 1.1E-05 50.5 45.0 12 521-532 348-359 (581)
149 KOG1029 Endocytic adaptor prot 97.1 0.62 1.3E-05 51.2 35.9 12 792-803 710-721 (1118)
150 KOG0612 Rho-associated, coiled 97.1 0.96 2.1E-05 52.8 50.8 7 749-755 915-921 (1317)
151 PF14915 CCDC144C: CCDC144C pr 97.1 0.33 7.1E-06 47.4 38.5 39 582-620 137-175 (305)
152 PRK09039 hypothetical protein; 97.1 0.17 3.8E-06 52.5 22.9 9 764-772 265-273 (343)
153 PF15619 Lebercilin: Ciliary p 97.0 0.28 6.1E-06 46.0 24.3 10 713-722 176-185 (194)
154 KOG1814 Predicted E3 ubiquitin 97.0 0.00055 1.2E-08 68.5 4.0 42 750-791 185-236 (445)
155 PF09730 BicD: Microtubule-ass 97.0 0.88 1.9E-05 51.4 69.0 24 434-457 359-382 (717)
156 COG0419 SbcC ATPase involved i 97.0 1.3 2.9E-05 53.3 75.8 38 761-798 812-855 (908)
157 KOG1493 Anaphase-promoting com 97.0 0.00017 3.8E-09 52.8 0.1 35 762-796 45-82 (84)
158 KOG1001 Helicase-like transcri 97.0 0.00024 5.1E-09 79.4 1.1 48 750-798 455-503 (674)
159 KOG2817 Predicted E3 ubiquitin 97.0 0.00047 1E-08 69.1 3.0 60 745-804 330-394 (394)
160 PF08647 BRE1: BRE1 E3 ubiquit 97.0 0.028 6E-07 46.0 12.7 79 560-638 2-80 (96)
161 KOG3579 Predicted E3 ubiquitin 96.9 0.0004 8.6E-09 65.4 1.4 34 749-782 268-305 (352)
162 PF09728 Taxilin: Myosin-like 96.9 0.67 1.5E-05 47.3 37.2 87 643-729 214-300 (309)
163 PF10473 CENP-F_leu_zip: Leuci 96.8 0.32 6.9E-06 42.5 19.9 37 603-639 24-60 (140)
164 PF09789 DUF2353: Uncharacteri 96.7 0.31 6.7E-06 49.0 20.0 30 770-799 248-277 (319)
165 KOG0963 Transcription factor/C 96.7 1.2 2.7E-05 48.1 44.2 151 517-668 194-353 (629)
166 PF15619 Lebercilin: Ciliary p 96.7 0.56 1.2E-05 44.0 26.9 24 706-729 162-185 (194)
167 KOG3002 Zn finger protein [Gen 96.6 0.00095 2.1E-08 66.5 2.2 44 748-795 47-91 (299)
168 PF10473 CENP-F_leu_zip: Leuci 96.6 0.46 1E-05 41.5 20.8 24 606-629 76-99 (140)
169 PF05290 Baculo_IE-1: Baculovi 96.6 0.0083 1.8E-07 50.1 6.6 51 748-798 79-135 (140)
170 KOG3800 Predicted E3 ubiquitin 96.6 0.0011 2.5E-08 63.3 1.9 35 766-800 22-56 (300)
171 KOG3161 Predicted E3 ubiquitin 96.4 0.00069 1.5E-08 71.3 -0.2 38 748-788 10-51 (861)
172 KOG4360 Uncharacterized coiled 96.4 0.59 1.3E-05 48.9 20.0 52 138-189 204-255 (596)
173 KOG3113 Uncharacterized conser 96.4 0.0025 5.5E-08 59.2 2.9 53 747-802 109-165 (293)
174 KOG2034 Vacuolar sorting prote 96.3 0.0061 1.3E-07 67.7 6.2 43 739-781 807-851 (911)
175 KOG2114 Vacuolar assembly/sort 96.3 0.0079 1.7E-07 66.3 6.9 76 700-792 804-880 (933)
176 smart00744 RINGv The RING-vari 96.3 0.0035 7.5E-08 43.7 2.8 41 751-791 1-49 (49)
177 KOG4593 Mitotic checkpoint pro 96.3 2.3 4.9E-05 46.8 63.0 14 762-775 650-663 (716)
178 KOG2930 SCF ubiquitin ligase, 96.3 0.002 4.3E-08 50.6 1.7 29 766-795 80-108 (114)
179 KOG0980 Actin-binding protein 96.3 2.8 6E-05 47.4 32.5 16 734-749 596-611 (980)
180 KOG0971 Microtubule-associated 96.2 2.9 6.3E-05 47.2 72.6 21 783-803 1219-1239(1243)
181 PF09728 Taxilin: Myosin-like 96.2 1.7 3.6E-05 44.5 38.6 13 710-722 253-265 (309)
182 PF13514 AAA_27: AAA domain 96.2 4.9 0.00011 49.8 80.3 55 434-488 459-515 (1111)
183 PHA03096 p28-like protein; Pro 96.2 0.0019 4.2E-08 63.8 1.5 44 750-793 179-232 (284)
184 KOG4185 Predicted E3 ubiquitin 96.2 0.0019 4.2E-08 66.3 1.5 43 759-801 19-63 (296)
185 COG5185 HEC1 Protein involved 96.2 1.9 4.1E-05 44.7 39.0 38 400-437 303-340 (622)
186 COG5236 Uncharacterized conser 96.2 0.0027 5.9E-08 61.6 2.1 45 749-793 61-106 (493)
187 KOG1100 Predicted E3 ubiquitin 96.2 0.0025 5.4E-08 60.2 1.8 41 751-796 160-201 (207)
188 PF02891 zf-MIZ: MIZ/SP-RING z 96.2 0.0034 7.4E-08 43.9 2.0 44 750-793 3-50 (50)
189 PF09730 BicD: Microtubule-ass 96.1 3.5 7.5E-05 46.8 67.1 85 75-169 29-113 (717)
190 COG4477 EzrA Negative regulato 96.0 2.7 5.8E-05 44.8 45.9 14 387-400 169-182 (570)
191 PF04849 HAP1_N: HAP1 N-termin 95.9 2.1 4.5E-05 42.8 28.5 70 641-710 216-285 (306)
192 KOG1734 Predicted RING-contain 95.9 0.0019 4.1E-08 60.6 -0.1 49 750-798 225-284 (328)
193 COG5219 Uncharacterized conser 95.9 0.0038 8.1E-08 68.9 2.1 46 750-795 1470-1523(1525)
194 PF11793 FANCL_C: FANCL C-term 95.9 0.0019 4.2E-08 49.1 -0.2 47 750-796 3-67 (70)
195 PF10367 Vps39_2: Vacuolar sor 95.9 0.011 2.5E-07 50.2 4.6 29 749-777 78-108 (109)
196 KOG4362 Transcriptional regula 95.8 0.0019 4.1E-08 70.4 -0.8 51 744-794 16-68 (684)
197 PF14915 CCDC144C: CCDC144C pr 95.7 2.3 4.9E-05 41.8 41.0 35 593-627 211-245 (305)
198 PF10146 zf-C4H2: Zinc finger- 95.7 1.1 2.3E-05 43.3 17.2 26 771-797 196-221 (230)
199 KOG3970 Predicted E3 ubiquitin 95.6 0.0075 1.6E-07 54.9 2.4 47 749-795 50-105 (299)
200 COG5185 HEC1 Protein involved 95.6 3.4 7.3E-05 43.0 39.9 99 89-187 266-364 (622)
201 PF10272 Tmpp129: Putative tra 95.6 0.0094 2E-07 60.8 3.3 53 750-802 272-358 (358)
202 COG5175 MOT2 Transcriptional r 95.6 0.006 1.3E-07 59.1 1.8 52 751-802 16-71 (480)
203 COG3883 Uncharacterized protei 95.5 2.6 5.7E-05 41.1 28.2 66 521-586 33-98 (265)
204 KOG0827 Predicted E3 ubiquitin 95.5 0.0055 1.2E-07 60.9 1.3 37 764-800 23-61 (465)
205 PF03854 zf-P11: P-11 zinc fin 95.5 0.0063 1.4E-07 40.3 1.0 42 751-795 4-46 (50)
206 KOG1941 Acetylcholine receptor 95.4 0.0049 1.1E-07 61.1 0.7 44 750-793 366-414 (518)
207 PF09789 DUF2353: Uncharacteri 95.4 3.4 7.4E-05 41.8 25.6 18 710-727 205-222 (319)
208 COG3883 Uncharacterized protei 95.4 2.9 6.2E-05 40.8 27.8 39 517-555 50-88 (265)
209 TIGR03185 DNA_S_dndD DNA sulfu 95.4 7.1 0.00015 45.2 38.7 27 342-368 263-289 (650)
210 KOG1645 RING-finger-containing 95.2 0.0056 1.2E-07 61.4 0.2 42 762-803 22-64 (463)
211 PF12325 TMF_TATA_bd: TATA ele 95.2 1.6 3.5E-05 37.1 14.7 42 562-603 69-110 (120)
212 KOG3039 Uncharacterized conser 95.1 0.015 3.2E-07 54.0 2.4 36 746-781 40-75 (303)
213 KOG0612 Rho-associated, coiled 95.0 10 0.00022 44.8 62.3 43 144-186 492-534 (1317)
214 KOG4445 Uncharacterized conser 95.0 0.016 3.5E-07 55.5 2.6 47 750-796 116-187 (368)
215 PF10481 CENP-F_N: Cenp-F N-te 94.9 2.3 4.9E-05 40.9 16.2 21 709-729 110-130 (307)
216 PF06008 Laminin_I: Laminin Do 94.9 4.8 0.0001 40.5 31.6 64 662-725 181-244 (264)
217 KOG0298 DEAD box-containing he 94.9 0.06 1.3E-06 62.6 7.0 45 750-795 1154-1199(1394)
218 COG3813 Uncharacterized protei 94.7 0.033 7.1E-07 40.6 3.0 49 750-801 6-58 (84)
219 PF13851 GAS: Growth-arrest sp 94.5 4.4 9.6E-05 38.5 25.2 97 521-617 29-128 (201)
220 COG5109 Uncharacterized conser 94.5 0.024 5.3E-07 54.7 2.4 60 745-804 332-396 (396)
221 PF14569 zf-UDP: Zinc-binding 94.5 0.032 6.9E-07 41.7 2.5 47 750-796 10-63 (80)
222 KOG4360 Uncharacterized coiled 94.5 3.9 8.4E-05 43.1 18.0 137 517-656 164-300 (596)
223 PF07111 HCR: Alpha helical co 94.4 10 0.00023 42.0 71.0 27 285-311 302-328 (739)
224 KOG2932 E3 ubiquitin ligase in 94.4 0.018 3.9E-07 55.4 1.2 41 751-794 92-133 (389)
225 PF13514 AAA_27: AAA domain 94.3 19 0.00042 44.7 78.0 34 339-372 562-595 (1111)
226 PF08317 Spc7: Spc7 kinetochor 94.2 8.2 0.00018 40.1 30.9 13 734-746 276-288 (325)
227 TIGR03007 pepcterm_ChnLen poly 94.1 5.7 0.00012 44.4 20.7 27 442-468 162-188 (498)
228 PF06906 DUF1272: Protein of u 94.0 0.05 1.1E-06 37.8 2.4 47 750-799 6-56 (57)
229 COG4647 AcxC Acetone carboxyla 94.0 0.027 5.8E-07 46.3 1.4 42 734-775 37-83 (165)
230 PF08614 ATG16: Autophagy prot 93.9 1 2.3E-05 42.7 12.2 8 523-530 78-85 (194)
231 KOG4185 Predicted E3 ubiquitin 93.9 0.15 3.2E-06 52.5 6.9 44 750-793 208-265 (296)
232 PRK11281 hypothetical protein; 93.8 20 0.00044 43.5 35.8 12 480-491 85-96 (1113)
233 PF05883 Baculo_RING: Baculovi 93.8 0.024 5.3E-07 48.2 0.9 33 749-781 26-67 (134)
234 PF10481 CENP-F_N: Cenp-F N-te 93.8 6.8 0.00015 37.8 19.2 27 696-722 164-190 (307)
235 TIGR03185 DNA_S_dndD DNA sulfu 93.7 17 0.00036 42.1 39.9 9 790-798 580-588 (650)
236 PF13240 zinc_ribbon_2: zinc-r 93.7 0.011 2.5E-07 33.5 -0.9 23 771-794 1-23 (23)
237 PF10168 Nup88: Nuclear pore c 93.7 17 0.00037 42.1 23.5 20 610-629 639-658 (717)
238 TIGR01843 type_I_hlyD type I s 93.6 13 0.00028 40.5 25.0 17 526-542 81-97 (423)
239 PF08614 ATG16: Autophagy prot 93.6 1.1 2.3E-05 42.6 11.7 6 711-716 168-173 (194)
240 TIGR01843 type_I_hlyD type I s 93.6 13 0.00028 40.5 23.9 22 706-727 251-272 (423)
241 PF04156 IncA: IncA protein; 93.4 6 0.00013 37.5 16.6 11 526-536 95-105 (191)
242 PF15066 CAGE1: Cancer-associa 93.3 12 0.00026 39.2 26.1 121 232-364 314-434 (527)
243 PF07111 HCR: Alpha helical co 93.3 16 0.00035 40.6 70.4 9 787-795 722-730 (739)
244 KOG1815 Predicted E3 ubiquitin 92.9 0.068 1.5E-06 58.1 2.8 55 747-801 68-132 (444)
245 PF09755 DUF2046: Uncharacteri 92.8 11 0.00025 37.6 35.1 24 443-466 180-203 (310)
246 TIGR01005 eps_transp_fam exopo 92.8 19 0.00042 42.6 23.3 10 522-531 211-220 (754)
247 TIGR03007 pepcterm_ChnLen poly 92.7 20 0.00042 40.1 24.5 11 521-531 177-187 (498)
248 KOG0825 PHD Zn-finger protein 92.7 0.045 9.8E-07 59.6 1.0 47 750-796 97-155 (1134)
249 TIGR01005 eps_transp_fam exopo 92.5 18 0.0004 42.8 22.6 26 521-546 196-221 (754)
250 KOG0999 Microtubule-associated 92.5 17 0.00037 38.9 67.0 27 340-366 228-254 (772)
251 KOG0979 Structural maintenance 92.4 26 0.00057 40.8 59.9 49 141-189 176-224 (1072)
252 KOG3899 Uncharacterized conser 92.4 0.046 1E-06 52.1 0.6 37 766-802 324-372 (381)
253 KOG1812 Predicted E3 ubiquitin 92.4 0.055 1.2E-06 56.9 1.3 50 749-798 146-206 (384)
254 PF13248 zf-ribbon_3: zinc-rib 92.1 0.032 6.8E-07 32.9 -0.5 24 770-794 3-26 (26)
255 PF04111 APG6: Autophagy prote 91.9 3.8 8.2E-05 42.1 13.8 73 659-731 64-136 (314)
256 PF09755 DUF2046: Uncharacteri 91.9 15 0.00032 36.8 32.7 26 664-689 227-252 (310)
257 TIGR01562 FdhE formate dehydro 91.9 0.04 8.6E-07 55.3 -0.5 43 750-793 185-233 (305)
258 PF13851 GAS: Growth-arrest sp 91.8 12 0.00026 35.6 24.2 20 619-638 102-121 (201)
259 KOG4809 Rab6 GTPase-interactin 91.8 21 0.00045 38.3 29.4 54 668-721 516-569 (654)
260 PF06008 Laminin_I: Laminin Do 91.2 18 0.00038 36.4 31.4 13 522-534 55-67 (264)
261 KOG1428 Inhibitor of type V ad 91.2 0.13 2.7E-06 60.0 2.4 46 750-795 3487-3544(3738)
262 KOG0827 Predicted E3 ubiquitin 91.2 0.98 2.1E-05 45.6 8.2 45 751-796 198-246 (465)
263 KOG2113 Predicted RNA binding 91.2 0.15 3.2E-06 49.5 2.5 47 745-794 339-386 (394)
264 PF07975 C1_4: TFIIH C1-like d 91.1 0.18 4E-06 35.0 2.2 39 752-791 2-50 (51)
265 PF04111 APG6: Autophagy prote 91.1 5.1 0.00011 41.1 13.7 9 767-775 248-256 (314)
266 KOG0243 Kinesin-like protein [ 90.9 40 0.00087 39.9 32.3 17 441-457 404-420 (1041)
267 PF05911 DUF869: Plant protein 90.8 38 0.00082 39.3 62.8 33 383-415 277-309 (769)
268 KOG0804 Cytoplasmic Zn-finger 90.6 20 0.00044 37.5 16.9 13 687-699 435-447 (493)
269 PF08746 zf-RING-like: RING-li 90.6 0.3 6.5E-06 32.9 2.9 39 752-790 1-43 (43)
270 PF14319 Zn_Tnp_IS91: Transpos 90.5 0.087 1.9E-06 44.4 0.3 41 746-793 27-69 (111)
271 PF07191 zinc-ribbons_6: zinc- 90.5 0.024 5.1E-07 42.0 -2.7 40 750-795 2-41 (70)
272 KOG1899 LAR transmembrane tyro 90.5 30 0.00066 37.8 21.3 102 515-623 107-208 (861)
273 PRK04023 DNA polymerase II lar 90.3 0.16 3.5E-06 57.9 2.2 48 750-800 627-679 (1121)
274 PF09986 DUF2225: Uncharacteri 90.1 0.13 2.8E-06 49.5 1.1 55 747-802 3-66 (214)
275 PF10498 IFT57: Intra-flagella 90.0 17 0.00037 38.0 16.4 12 735-746 336-347 (359)
276 COG3364 Zn-ribbon containing p 90.0 0.16 3.4E-06 40.2 1.3 26 763-793 4-29 (112)
277 PRK10929 putative mechanosensi 89.9 55 0.0012 39.9 43.5 43 577-619 267-309 (1109)
278 PF06818 Fez1: Fez1; InterPro 89.9 17 0.00037 34.0 21.9 27 521-547 12-38 (202)
279 PF10571 UPF0547: Uncharacteri 89.8 0.17 3.7E-06 29.7 1.0 12 784-795 14-25 (26)
280 PF12329 TMF_DNA_bd: TATA elem 89.7 5.3 0.00011 30.8 9.4 51 583-633 6-56 (74)
281 COG4026 Uncharacterized protei 89.5 4.8 0.0001 37.3 10.4 72 659-730 135-206 (290)
282 PF00769 ERM: Ezrin/radixin/mo 89.5 23 0.0005 35.0 18.0 43 517-559 10-52 (246)
283 PF02318 FYVE_2: FYVE-type zin 89.4 0.37 8E-06 41.3 3.3 43 750-792 55-102 (118)
284 PF10235 Cript: Microtubule-as 89.3 0.21 4.5E-06 39.5 1.5 36 750-795 45-80 (90)
285 PF13870 DUF4201: Domain of un 89.3 19 0.0004 33.6 23.5 25 570-594 44-68 (177)
286 PF13870 DUF4201: Domain of un 89.0 19 0.00042 33.5 23.5 70 558-627 53-122 (177)
287 KOG2979 Protein involved in DN 89.0 8.3 0.00018 37.1 12.0 45 749-793 176-222 (262)
288 KOG2991 Splicing regulator [RN 88.9 22 0.00048 34.0 23.8 32 669-700 260-291 (330)
289 KOG1952 Transcription factor N 88.9 0.21 4.5E-06 55.6 1.6 45 750-794 192-246 (950)
290 PF06818 Fez1: Fez1; InterPro 88.8 21 0.00045 33.5 23.8 73 521-593 33-105 (202)
291 TIGR02680 conserved hypothetic 88.8 79 0.0017 40.2 74.2 33 156-188 286-318 (1353)
292 cd00065 FYVE FYVE domain; Zinc 88.7 0.13 2.9E-06 37.4 0.1 33 750-782 3-39 (57)
293 PF01363 FYVE: FYVE zinc finge 88.7 0.028 6.1E-07 43.0 -3.7 32 750-781 10-45 (69)
294 KOG0309 Conserved WD40 repeat- 88.6 0.27 5.8E-06 53.7 2.2 42 750-792 1029-1073(1081)
295 KOG0249 LAR-interacting protei 88.5 41 0.0009 37.5 18.1 28 700-727 229-256 (916)
296 PF10571 UPF0547: Uncharacteri 88.1 0.14 3E-06 30.1 -0.2 21 751-771 2-24 (26)
297 KOG0999 Microtubule-associated 88.0 42 0.00092 36.1 68.3 42 230-271 151-192 (772)
298 PRK11281 hypothetical protein; 87.8 76 0.0016 38.9 45.8 29 339-367 78-106 (1113)
299 KOG4739 Uncharacterized protei 87.7 0.15 3.3E-06 48.3 -0.2 23 759-781 15-37 (233)
300 PF08882 Acetone_carb_G: Aceto 87.6 0.11 2.3E-06 42.3 -1.1 14 762-775 24-37 (112)
301 PF04216 FdhE: Protein involve 87.5 0.11 2.5E-06 52.8 -1.3 44 750-794 173-221 (290)
302 PF15066 CAGE1: Cancer-associa 87.4 42 0.0009 35.4 27.9 9 569-577 398-406 (527)
303 PF14353 CpXC: CpXC protein 87.4 0.49 1.1E-05 41.4 2.8 47 750-796 2-50 (128)
304 KOG1899 LAR transmembrane tyro 87.4 49 0.0011 36.2 21.2 86 522-607 121-206 (861)
305 PRK03564 formate dehydrogenase 87.4 0.19 4.1E-06 50.5 0.2 44 749-793 187-235 (309)
306 COG4026 Uncharacterized protei 87.1 18 0.00038 33.8 12.3 34 554-587 149-182 (290)
307 TIGR00634 recN DNA repair prot 86.9 61 0.0013 36.8 26.6 29 517-545 173-201 (563)
308 KOG1853 LIS1-interacting prote 86.5 31 0.00066 33.0 18.1 58 566-626 25-82 (333)
309 COG4477 EzrA Negative regulato 86.5 52 0.0011 35.6 53.0 27 167-193 104-130 (570)
310 PF10083 DUF2321: Uncharacteri 86.4 0.39 8.4E-06 41.9 1.6 28 768-799 27-54 (158)
311 PF04710 Pellino: Pellino; In 86.2 0.22 4.8E-06 50.5 0.0 36 762-797 360-403 (416)
312 PF10186 Atg14: UV radiation r 86.2 43 0.00094 34.3 19.1 10 750-759 174-183 (302)
313 PF12795 MscS_porin: Mechanose 86.1 37 0.0008 33.5 22.7 17 710-726 194-210 (240)
314 KOG1940 Zn-finger protein [Gen 85.7 0.33 7.1E-06 47.6 0.9 42 750-792 159-204 (276)
315 PF06005 DUF904: Protein of un 85.7 14 0.0003 28.2 10.9 25 556-580 41-65 (72)
316 PF00769 ERM: Ezrin/radixin/mo 85.5 40 0.00086 33.3 18.0 32 708-739 182-213 (246)
317 KOG4718 Non-SMC (structural ma 85.1 0.71 1.5E-05 42.4 2.6 61 735-796 165-228 (235)
318 PF06785 UPF0242: Uncharacteri 85.1 44 0.00096 33.5 20.4 50 572-621 103-152 (401)
319 KOG2068 MOT2 transcription fac 85.1 0.66 1.4E-05 46.2 2.6 48 750-798 250-301 (327)
320 PLN02189 cellulose synthase 84.9 0.6 1.3E-05 54.3 2.6 46 750-795 35-87 (1040)
321 PHA02825 LAP/PHD finger-like p 84.9 0.88 1.9E-05 40.0 3.0 48 749-797 8-61 (162)
322 PF15616 TerY-C: TerY-C metal 84.7 0.5 1.1E-05 40.5 1.4 41 748-795 76-116 (131)
323 PF11559 ADIP: Afadin- and alp 84.7 30 0.00065 31.2 18.4 16 709-724 134-149 (151)
324 TIGR01000 bacteriocin_acc bact 84.7 68 0.0015 35.3 23.5 26 523-548 94-119 (457)
325 KOG3268 Predicted E3 ubiquitin 84.7 0.65 1.4E-05 41.0 2.1 31 766-796 189-229 (234)
326 COG2433 Uncharacterized conser 84.4 28 0.00061 38.2 14.2 33 689-721 476-508 (652)
327 KOG4302 Microtubule-associated 84.2 80 0.0017 35.8 27.3 46 647-692 228-273 (660)
328 PLN02436 cellulose synthase A 84.1 0.67 1.4E-05 54.0 2.5 46 750-795 37-89 (1094)
329 PF09538 FYDLN_acid: Protein o 84.1 0.62 1.3E-05 38.8 1.7 14 748-761 8-21 (108)
330 KOG0993 Rab5 GTPase effector R 83.7 57 0.0012 33.7 37.5 76 700-782 426-507 (542)
331 COG4306 Uncharacterized protei 83.5 0.57 1.2E-05 38.6 1.2 27 768-798 27-53 (160)
332 COG2433 Uncharacterized conser 83.5 33 0.00071 37.7 14.3 6 47-52 112-117 (652)
333 KOG0288 WD40 repeat protein Ti 83.5 60 0.0013 33.8 16.8 48 527-574 14-61 (459)
334 PRK15422 septal ring assembly 83.3 18 0.0004 27.7 10.8 15 562-576 54-68 (79)
335 PTZ00303 phosphatidylinositol 83.3 0.58 1.3E-05 51.4 1.5 33 750-782 461-502 (1374)
336 KOG1853 LIS1-interacting prote 83.3 44 0.00094 32.0 21.7 65 582-646 91-155 (333)
337 PLN02195 cellulose synthase A 83.2 0.95 2.1E-05 52.4 3.2 46 750-795 7-59 (977)
338 PRK14714 DNA polymerase II lar 83.1 0.51 1.1E-05 55.6 1.1 49 750-798 668-723 (1337)
339 PF10164 DUF2367: Uncharacteri 83.0 0.29 6.3E-06 38.7 -0.6 38 750-794 50-98 (98)
340 KOG1812 Predicted E3 ubiquitin 82.8 0.52 1.1E-05 49.7 1.0 42 747-789 304-350 (384)
341 KOG0972 Huntingtin interacting 82.6 44 0.00096 32.7 13.4 44 689-732 289-332 (384)
342 KOG2113 Predicted RNA binding 82.3 0.36 7.8E-06 46.9 -0.4 51 745-795 132-183 (394)
343 PF15254 CCDC14: Coiled-coil d 82.2 98 0.0021 35.3 21.3 160 524-683 392-560 (861)
344 PLN02638 cellulose synthase A 82.2 0.92 2E-05 53.1 2.6 46 750-795 18-70 (1079)
345 PF09787 Golgin_A5: Golgin sub 82.0 91 0.002 34.8 36.1 17 252-268 119-135 (511)
346 PF09738 DUF2051: Double stran 82.0 40 0.00087 34.2 13.7 18 708-725 226-243 (302)
347 PHA02862 5L protein; Provision 81.7 1.1 2.5E-05 38.4 2.4 46 750-796 3-54 (156)
348 KOG0982 Centrosomal protein Nu 81.7 72 0.0016 33.3 26.2 37 584-620 306-342 (502)
349 PF11932 DUF3450: Protein of u 81.6 59 0.0013 32.3 17.2 14 602-615 55-68 (251)
350 KOG3842 Adaptor protein Pellin 81.6 0.96 2.1E-05 44.1 2.1 36 762-797 373-416 (429)
351 PF05911 DUF869: Plant protein 81.6 1.1E+02 0.0025 35.6 60.9 28 702-729 734-761 (769)
352 PF14205 Cys_rich_KTR: Cystein 81.5 0.55 1.2E-05 32.7 0.4 30 748-777 3-36 (55)
353 PF09787 Golgin_A5: Golgin sub 80.8 1E+02 0.0022 34.5 34.9 9 766-774 458-466 (511)
354 PF12773 DZR: Double zinc ribb 80.7 1.3 2.9E-05 31.1 2.1 41 752-798 1-43 (50)
355 PF14446 Prok-RING_1: Prokaryo 80.6 1.8 4E-05 30.4 2.7 42 750-796 6-53 (54)
356 PLN02915 cellulose synthase A 80.3 1.1 2.5E-05 52.1 2.6 46 750-795 16-68 (1044)
357 KOG1356 Putative transcription 80.3 0.58 1.3E-05 52.3 0.3 49 750-798 230-285 (889)
358 KOG2391 Vacuolar sorting prote 80.3 70 0.0015 32.4 14.2 15 11-25 123-137 (365)
359 PF15290 Syntaphilin: Golgi-lo 80.1 63 0.0014 31.7 13.9 22 709-730 146-167 (305)
360 KOG4642 Chaperone-dependent E3 79.9 2.6 5.7E-05 40.1 4.3 54 750-803 212-265 (284)
361 PF14073 Cep57_CLD: Centrosome 79.8 49 0.0011 30.3 19.9 28 584-611 6-33 (178)
362 PRK10929 putative mechanosensi 79.8 1.6E+02 0.0034 36.2 43.3 21 478-498 105-125 (1109)
363 PF12777 MT: Microtubule-bindi 79.7 85 0.0018 33.0 17.1 249 519-768 1-325 (344)
364 cd00350 rubredoxin_like Rubred 79.4 1.3 2.8E-05 27.8 1.5 12 783-794 16-27 (33)
365 PF04710 Pellino: Pellino; In 79.3 0.61 1.3E-05 47.5 0.0 32 762-793 304-337 (416)
366 PF04423 Rad50_zn_hook: Rad50 79.2 0.67 1.4E-05 33.2 0.2 11 786-796 22-32 (54)
367 KOG0979 Structural maintenance 79.0 1.4E+02 0.0031 35.2 60.6 57 132-188 248-304 (1072)
368 PF05605 zf-Di19: Drought indu 78.9 0.85 1.8E-05 32.7 0.7 41 749-796 2-43 (54)
369 PLN02400 cellulose synthase 78.9 1.1 2.4E-05 52.4 1.9 46 750-795 37-89 (1085)
370 smart00064 FYVE Protein presen 78.7 1.2 2.6E-05 33.7 1.5 33 750-782 11-47 (68)
371 PF06785 UPF0242: Uncharacteri 78.6 77 0.0017 31.9 19.5 9 787-795 381-389 (401)
372 TIGR00622 ssl1 transcription f 78.6 1.5 3.2E-05 36.5 2.0 42 750-792 56-111 (112)
373 PF03833 PolC_DP2: DNA polymer 77.9 0.7 1.5E-05 52.1 0.0 46 750-798 656-706 (900)
374 TIGR01000 bacteriocin_acc bact 77.9 1.2E+02 0.0025 33.5 25.1 26 693-718 290-315 (457)
375 PF09538 FYDLN_acid: Protein o 77.6 0.87 1.9E-05 37.9 0.5 28 770-797 10-39 (108)
376 PF07503 zf-HYPF: HypF finger; 77.5 2.1 4.6E-05 27.2 2.1 26 771-796 1-33 (35)
377 PRK14559 putative protein seri 77.5 1.3 2.9E-05 49.9 2.0 25 771-796 29-53 (645)
378 KOG1937 Uncharacterized conser 77.4 1E+02 0.0022 32.6 33.6 27 284-310 295-321 (521)
379 PF09297 zf-NADH-PPase: NADH p 76.6 0.36 7.9E-06 30.1 -1.6 25 769-793 3-30 (32)
380 PF13805 Pil1: Eisosome compon 76.6 84 0.0018 31.2 19.3 37 77-113 54-90 (271)
381 PRK10869 recombination and rep 76.5 1.4E+02 0.003 33.7 24.8 10 443-452 187-196 (553)
382 PF13717 zinc_ribbon_4: zinc-r 76.5 1.1 2.4E-05 28.8 0.6 11 750-760 3-13 (36)
383 PF12906 RINGv: RING-variant d 76.4 2 4.3E-05 29.7 1.9 39 752-790 1-47 (47)
384 COG1885 Uncharacterized protei 76.0 1.4 3E-05 35.2 1.1 14 783-796 48-61 (115)
385 PF14073 Cep57_CLD: Centrosome 75.9 65 0.0014 29.6 22.2 20 517-536 9-28 (178)
386 COG1655 Uncharacterized protei 75.8 0.4 8.6E-06 44.6 -2.2 19 747-765 17-36 (267)
387 TIGR03017 EpsF chain length de 75.7 1.3E+02 0.0028 32.9 24.6 22 172-193 176-197 (444)
388 COG3058 FdhE Uncharacterized p 75.2 1.6 3.4E-05 42.2 1.5 45 748-793 184-234 (308)
389 PRK05978 hypothetical protein; 75.2 1.7 3.8E-05 38.4 1.7 32 750-797 34-65 (148)
390 PF03915 AIP3: Actin interacti 75.1 1.2E+02 0.0027 32.5 16.1 34 119-152 200-233 (424)
391 PF13719 zinc_ribbon_5: zinc-r 74.1 1.5 3.2E-05 28.5 0.7 11 750-760 3-13 (37)
392 KOG0982 Centrosomal protein Nu 73.8 1.2E+02 0.0026 31.8 25.2 14 517-530 220-233 (502)
393 PRK01343 zinc-binding protein; 73.8 2.4 5.2E-05 30.3 1.7 13 783-795 8-20 (57)
394 TIGR02300 FYDLN_acid conserved 73.8 1.8 4E-05 36.5 1.4 29 746-774 6-39 (129)
395 KOG3842 Adaptor protein Pellin 73.4 2.2 4.8E-05 41.6 2.0 56 735-792 278-349 (429)
396 PF05278 PEARLI-4: Arabidopsis 72.9 1E+02 0.0022 30.5 15.5 68 661-728 195-262 (269)
397 cd00729 rubredoxin_SM Rubredox 72.7 1.9 4.2E-05 27.3 1.0 10 784-793 18-27 (34)
398 COG3074 Uncharacterized protei 72.5 36 0.00079 25.1 10.5 10 523-532 22-31 (79)
399 PF09723 Zn-ribbon_8: Zinc rib 72.3 0.81 1.8E-05 30.7 -0.8 26 765-792 9-34 (42)
400 PF10013 DUF2256: Uncharacteri 72.0 2.1 4.5E-05 28.2 1.0 13 783-795 7-19 (42)
401 PF07754 DUF1610: Domain of un 72.0 0.79 1.7E-05 26.2 -0.8 8 785-792 17-24 (24)
402 KOG1937 Uncharacterized conser 71.9 1.4E+02 0.003 31.6 33.5 13 565-577 499-511 (521)
403 COG1198 PriA Primosomal protei 71.9 1.3 2.9E-05 50.4 0.2 44 748-793 434-484 (730)
404 KOG3362 Predicted BBOX Zn-fing 71.9 1.5 3.2E-05 37.6 0.4 33 751-784 120-153 (156)
405 PF09889 DUF2116: Uncharacteri 71.8 2.2 4.7E-05 30.9 1.2 15 783-797 2-16 (59)
406 KOG2991 Splicing regulator [RN 71.7 99 0.0021 29.8 25.1 49 519-567 108-156 (330)
407 PF10205 KLRAQ: Predicted coil 71.4 56 0.0012 26.8 10.7 64 655-725 8-71 (102)
408 KOG4577 Transcription factor L 71.2 1.2 2.6E-05 42.7 -0.3 47 750-799 61-107 (383)
409 KOG0396 Uncharacterized conser 71.2 2 4.3E-05 43.5 1.2 43 762-804 346-388 (389)
410 KOG1729 FYVE finger containing 70.4 1 2.2E-05 44.9 -1.0 45 750-794 169-224 (288)
411 smart00290 ZnF_UBP Ubiquitin C 69.9 2.9 6.3E-05 29.3 1.5 24 751-774 1-24 (50)
412 COG0068 HypF Hydrogenase matur 69.8 2.1 4.5E-05 47.5 1.1 23 772-794 154-183 (750)
413 PF13166 AAA_13: AAA domain 69.3 2.4E+02 0.0052 33.2 27.1 203 522-727 268-471 (712)
414 PF10212 TTKRSYEDQ: Predicted 69.3 1.8E+02 0.0039 31.8 24.6 209 3-255 224-514 (518)
415 COG3024 Uncharacterized protei 69.3 3.2 6.9E-05 30.1 1.5 14 784-797 7-20 (65)
416 PRK10246 exonuclease subunit S 69.3 2.9E+02 0.0063 34.2 78.7 15 785-799 976-990 (1047)
417 COG1675 TFA1 Transcription ini 69.1 8.6 0.00019 35.2 4.7 34 750-799 114-147 (176)
418 KOG4603 TBP-1 interacting prot 69.0 75 0.0016 28.5 10.0 37 625-661 80-116 (201)
419 KOG1815 Predicted E3 ubiquitin 68.9 2.6 5.6E-05 45.9 1.6 38 761-798 178-240 (444)
420 KOG4218 Nuclear hormone recept 68.9 2.5 5.4E-05 41.9 1.3 11 751-761 17-27 (475)
421 PF15397 DUF4618: Domain of un 68.8 1.3E+02 0.0027 29.8 28.9 103 87-195 6-109 (258)
422 KOG2807 RNA polymerase II tran 68.7 1.3 2.9E-05 43.6 -0.5 25 766-791 350-374 (378)
423 TIGR00373 conserved hypothetic 67.8 2.8 6.1E-05 38.1 1.4 33 750-798 110-142 (158)
424 KOG2169 Zn-finger transcriptio 67.8 3.4 7.3E-05 47.1 2.3 55 746-800 303-361 (636)
425 KOG2462 C2H2-type Zn-finger pr 67.5 2.1 4.6E-05 41.5 0.5 45 751-795 189-254 (279)
426 KOG3799 Rab3 effector RIM1 and 67.4 11 0.00025 31.8 4.6 32 748-779 64-99 (169)
427 PRK14892 putative transcriptio 67.1 3.5 7.7E-05 33.6 1.7 19 783-802 41-59 (99)
428 TIGR03830 CxxCG_CxxCG_HTH puta 66.9 1.7 3.8E-05 37.9 -0.2 40 752-798 1-45 (127)
429 KOG1962 B-cell receptor-associ 66.7 1.2E+02 0.0026 28.9 12.2 8 559-566 163-170 (216)
430 KOG2807 RNA polymerase II tran 66.5 3.2 7E-05 41.0 1.6 35 762-796 323-357 (378)
431 PF13913 zf-C2HC_2: zinc-finge 66.5 2.2 4.7E-05 24.8 0.2 13 785-797 3-15 (25)
432 KOG4005 Transcription factor X 66.4 98 0.0021 29.4 10.8 10 174-183 132-141 (292)
433 PRK00564 hypA hydrogenase nick 65.9 1.7 3.7E-05 37.1 -0.4 28 767-794 69-98 (117)
434 COG2331 Uncharacterized protei 65.6 2.8 6E-05 31.5 0.7 30 764-795 15-44 (82)
435 PF04423 Rad50_zn_hook: Rad50 65.5 3.5 7.6E-05 29.5 1.2 11 751-761 22-32 (54)
436 PF04728 LPP: Lipoprotein leuc 65.5 48 0.001 23.8 8.1 28 521-548 5-32 (56)
437 PRK04179 rpl37e 50S ribosomal 64.9 1.8 3.8E-05 31.2 -0.4 23 769-791 17-39 (62)
438 PF15358 TSKS: Testis-specific 64.9 1.8E+02 0.0039 30.2 24.1 252 528-790 127-457 (558)
439 smart00132 LIM Zinc-binding do 64.7 3.6 7.8E-05 26.7 1.1 36 751-795 1-38 (39)
440 smart00647 IBR In Between Ring 64.7 2.5 5.4E-05 31.4 0.4 41 739-779 8-58 (64)
441 PF13166 AAA_13: AAA domain 64.7 2.9E+02 0.0063 32.5 28.1 203 508-713 269-471 (712)
442 KOG3475 60S ribosomal protein 64.7 2.6 5.6E-05 32.2 0.4 25 769-793 16-40 (92)
443 COG4338 Uncharacterized protei 64.5 2.1 4.5E-05 28.7 -0.1 9 787-795 15-23 (54)
444 PF05377 FlaC_arch: Flagella a 64.3 40 0.00087 24.1 6.1 51 520-570 1-51 (55)
445 PF08772 NOB1_Zn_bind: Nin one 64.0 1.4 3E-05 33.6 -1.1 22 772-793 12-33 (73)
446 COG4357 Zinc finger domain con 63.8 3.3 7.2E-05 32.7 0.9 46 752-797 38-93 (105)
447 TIGR02300 FYDLN_acid conserved 63.4 2.3 4.9E-05 35.9 -0.1 23 772-794 12-36 (129)
448 PRK06266 transcription initiat 63.4 4.2 9.2E-05 37.7 1.7 49 734-798 100-150 (178)
449 PF10212 TTKRSYEDQ: Predicted 63.4 2.3E+02 0.005 31.0 22.0 147 575-721 302-514 (518)
450 PF04102 SlyX: SlyX; InterPro 63.0 63 0.0014 24.5 7.7 52 635-686 1-52 (69)
451 PF07295 DUF1451: Protein of u 62.9 2.6 5.7E-05 37.3 0.2 26 763-793 114-139 (146)
452 KOG3726 Uncharacterized conser 62.7 4.1 8.9E-05 44.8 1.6 37 751-791 656-696 (717)
453 COG2816 NPY1 NTP pyrophosphohy 62.5 2.3 5.1E-05 41.8 -0.2 30 768-797 110-142 (279)
454 PF04102 SlyX: SlyX; InterPro 62.5 50 0.0011 25.0 7.0 52 523-574 1-52 (69)
455 KOG0239 Kinesin (KAR3 subfamil 62.4 3E+02 0.0064 31.9 20.5 209 516-724 97-316 (670)
456 COG1592 Rubrerythrin [Energy p 62.2 2.1 4.6E-05 38.6 -0.5 22 772-793 137-158 (166)
457 PF12660 zf-TFIIIC: Putative z 62.2 1.1 2.3E-05 36.9 -2.2 44 751-794 16-65 (99)
458 PF04012 PspA_IM30: PspA/IM30 62.1 1.6E+02 0.0034 28.6 22.3 170 508-680 12-186 (221)
459 PF14992 TMCO5: TMCO5 family 61.9 1.8E+02 0.0038 29.1 16.7 147 577-727 6-170 (280)
460 PF10267 Tmemb_cc2: Predicted 61.5 2.3E+02 0.0049 30.2 16.5 137 22-173 180-318 (395)
461 PF13465 zf-H2C2_2: Zinc-finge 61.4 3.2 7E-05 24.4 0.3 20 776-795 6-25 (26)
462 COG5627 MMS21 DNA repair prote 61.3 4.5 9.7E-05 38.0 1.4 49 750-799 190-243 (275)
463 PRK00420 hypothetical protein; 61.2 1.8 4E-05 36.1 -1.0 27 772-798 26-54 (112)
464 KOG2264 Exostosin EXT1L [Signa 61.2 68 0.0015 34.7 9.9 71 507-577 81-151 (907)
465 PF00096 zf-C2H2: Zinc finger, 61.1 2.6 5.7E-05 23.6 -0.1 9 787-795 3-11 (23)
466 KOG2751 Beclin-like protein [S 61.0 2.3E+02 0.0049 30.1 15.7 125 521-647 145-269 (447)
467 PRK00420 hypothetical protein; 61.0 3.1 6.7E-05 34.8 0.3 22 751-775 25-46 (112)
468 PF07282 OrfB_Zn_ribbon: Putat 60.8 3.6 7.8E-05 31.2 0.6 36 743-795 22-57 (69)
469 PF04912 Dynamitin: Dynamitin 60.8 2.4E+02 0.0052 30.2 18.5 162 513-679 210-388 (388)
470 PF14992 TMCO5: TMCO5 family 60.5 1.9E+02 0.004 28.9 16.8 151 566-720 9-170 (280)
471 PRK00295 hypothetical protein; 60.2 72 0.0016 24.1 7.8 51 524-574 3-53 (68)
472 PF15254 CCDC14: Coiled-coil d 60.1 3.2E+02 0.0069 31.5 26.7 203 519-724 334-559 (861)
473 PF10458 Val_tRNA-synt_C: Valy 60.1 71 0.0015 23.9 8.1 64 246-309 1-66 (66)
474 COG3677 Transposase and inacti 59.8 8.6 0.00019 33.4 2.8 47 735-794 16-63 (129)
475 PF05766 NinG: Bacteriophage L 59.8 24 0.00051 32.8 5.8 95 701-797 37-136 (189)
476 PRK03922 hypothetical protein; 59.7 4.8 0.0001 32.8 1.1 14 783-796 48-61 (113)
477 PF10267 Tmemb_cc2: Predicted 59.1 2.5E+02 0.0054 29.9 16.1 103 549-651 214-318 (395)
478 PF07800 DUF1644: Protein of u 59.0 4.9 0.00011 35.5 1.1 20 748-767 1-20 (162)
479 PF05377 FlaC_arch: Flagella a 58.9 64 0.0014 23.1 6.4 42 541-582 1-42 (55)
480 PHA00733 hypothetical protein 58.7 6 0.00013 34.4 1.7 49 748-796 39-111 (128)
481 PLN02248 cellulose synthase-li 58.7 6.5 0.00014 46.4 2.4 32 767-799 150-181 (1135)
482 PRK03947 prefoldin subunit alp 58.3 1.3E+02 0.0029 26.6 14.1 97 588-684 5-140 (140)
483 KOG0883 Cyclophilin type, U bo 58.2 6.6 0.00014 39.9 2.1 53 751-804 42-94 (518)
484 PF05700 BCAS2: Breast carcino 58.2 1.8E+02 0.004 28.1 17.8 169 22-198 38-220 (221)
485 COG4260 Membrane protease subu 58.1 3.9 8.4E-05 39.7 0.4 39 748-795 305-345 (345)
486 PRK04325 hypothetical protein; 58.1 85 0.0018 24.2 7.9 52 522-573 5-56 (74)
487 COG1867 TRM1 N2,N2-dimethylgua 57.8 3.6 7.7E-05 42.2 0.2 35 768-804 238-275 (380)
488 TIGR02977 phageshock_pspA phag 57.7 1.9E+02 0.0041 28.0 24.6 181 565-745 14-219 (219)
489 PRK09841 cryptic autophosphory 57.5 3.8E+02 0.0083 31.6 16.8 140 529-672 256-397 (726)
490 KOG1814 Predicted E3 ubiquitin 57.3 21 0.00045 37.0 5.3 72 704-775 323-400 (445)
491 PRK00846 hypothetical protein; 57.2 90 0.0019 24.3 7.8 53 522-574 9-61 (77)
492 PF15035 Rootletin: Ciliary ro 57.2 1.7E+02 0.0036 27.4 18.8 167 506-675 3-182 (182)
493 PRK00418 DNA gyrase inhibitor; 57.1 7.2 0.00016 28.5 1.6 18 785-802 7-27 (62)
494 PRK11032 hypothetical protein; 57.1 1.5E+02 0.0033 26.8 12.7 147 631-793 3-151 (160)
495 PF10497 zf-4CXXC_R1: Zinc-fin 56.9 9.5 0.00021 31.8 2.5 39 753-791 22-68 (105)
496 PF05335 DUF745: Protein of un 56.9 1.7E+02 0.0037 27.4 17.3 111 619-729 62-172 (188)
497 COG4068 Uncharacterized protei 56.2 6.9 0.00015 27.7 1.3 16 784-799 8-23 (64)
498 KOG4517 Uncharacterized conser 55.9 5 0.00011 32.6 0.7 41 752-795 70-117 (117)
499 PF15450 DUF4631: Domain of un 55.9 3.1E+02 0.0066 30.0 58.8 448 226-722 25-507 (531)
500 PTZ00073 60S ribosomal protein 55.9 3.3 7.2E-05 32.4 -0.3 25 769-793 16-40 (91)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-51 Score=428.28 Aligned_cols=685 Identities=31% Similarity=0.436 Sum_probs=547.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003678 75 EEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQ 154 (804)
Q Consensus 75 ~~~l~~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e 154 (804)
...++.++....+++.....++|.+...++.+...+.. +...+......+..++..|+..++.++.++..+...
T Consensus 4 ~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~ 77 (698)
T KOG0978|consen 4 EEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQ 77 (698)
T ss_pred hhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888888899999888877777764 455677888899999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhhhccCCCCCCCCCcchhccHHHHH
Q 003678 155 IENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELK 234 (804)
Q Consensus 155 ~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (804)
+..+.+.+.....++..++..++++.++++.+......+...+........ + .|++.......+.-....+..+.
T Consensus 78 ~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~--t---~~~~~~~~~~~~t~~~t~~~~l~ 152 (698)
T KOG0978|consen 78 ISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLN--T---YGNGNGSLSGTITVNSTELEELR 152 (698)
T ss_pred HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C---CCCcccccCcccccchhhhhhhc
Confidence 999999999999999999999999999999999998888766664433211 1 12222111111222235588899
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhh--hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003678 235 DSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDK--YVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDR 312 (804)
Q Consensus 235 ~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~--~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e~ 312 (804)
..++++......+..+++.++.....+..++..++..+.... ....+..+..++ +...+.
T Consensus 153 ~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~------------- 214 (698)
T KOG0978|consen 153 DEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQ------------- 214 (698)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhcc-------------
Confidence 999999999999999999999999999999998888774321 111111111110 000000
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHH
Q 003678 313 SLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKEM 391 (804)
Q Consensus 313 ~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~le~~~~~~~-~~~~~~el~~~~~~l~~~~ 391 (804)
... ++..+. + ....+..+...+..+..+++.+....+....+.+ ..++..+++.+++++..++
T Consensus 215 --~~~--------~~~~e~----~--~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~ 278 (698)
T KOG0978|consen 215 --RKT--------MESDEA----I--NSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHE 278 (698)
T ss_pred --ccc--------chhhhh----h--ccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 000 000000 0 1123577777888889999999998888777766 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhHhHhhhhHhHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHhccC
Q 003678 392 GMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKAL-IEKLQKDKLESQIMLDMYGQE 470 (804)
Q Consensus 392 ~~l~~~~~~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ei~~l~~~-l~~l~~~~~el~~~l~~~~~~ 470 (804)
..+.+....|++.......++....++...+.........+...+......+..+... +..+......++..+..+...
T Consensus 279 ~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 358 (698)
T KOG0978|consen 279 KLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRE 358 (698)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999988999999999999999998888877765555666666666666666666532 333334344555555555555
Q ss_pred CCChhcHHHHHHHHHH-HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHh---hHHHH
Q 003678 471 GRDPRDLMEIKESERR-AHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELV-AKLDASER---DVMEL 545 (804)
Q Consensus 471 ~~~~~~~~~l~~~~~~-~~~e~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~le~el~~l~-~~l~~~~~---~~~~l 545 (804)
..+.+++.....+... .+..++.+.........++++....+.....+......+.+...++ ...+...+ +...+
T Consensus 359 ~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 359 SQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 5555556555555555 6666666666666555544545545544455555555566666666 34555555 44455
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 546 EEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINAL 625 (804)
Q Consensus 546 ~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~ 625 (804)
...|..+......+..++..++++|++++.++..+..++.+.++...+++.+...+.+.++.+..++..+..++..+...
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003678 626 VESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELEN 705 (804)
Q Consensus 626 ~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~ 705 (804)
.+.+...+..++++...+......+..++..+...++..+..+.++...+..++..++.....+..++..+.+...+++.
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhH-hHHHHhHHhHhcCCCcccccccccccCCceeccCCCcccHHHHHHHhhcCC
Q 003678 706 ERNERKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH 784 (804)
Q Consensus 706 ~~~~~~~le~el~~l~~~l~~l~~~~~~-~~~~~l~~e~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~ 784 (804)
..+...++++++..++.++.+++....+ ..+..+.+++..|+.+++||+|..+||++||++|||+||+.||++++.+|+
T Consensus 599 ~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq 678 (698)
T KOG0978|consen 599 EKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ 678 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988876 789999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcCCCCCCcccccC
Q 003678 785 RKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 785 ~~CP~C~~~~~~~d~~~~~~ 804 (804)
|+||.|+.+||++||+||||
T Consensus 679 RKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 679 RKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred CCCCCCCCCCCcccccccCC
Confidence 99999999999999999997
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.82 E-value=1.6e-12 Score=156.79 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCh-----hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003678 83 SSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSA-----EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIEN 157 (804)
Q Consensus 83 ~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~-----~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~ 157 (804)
....+++.+|..+.+++.+ ++++..+|..++.| ..+..|.....+....+...+...+..+..++..+...+..
T Consensus 172 ~r~~ea~~~L~~~~~nl~~-~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 250 (1163)
T COG1196 172 ERKEEAERKLERTEENLER-LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999 99999999999777 57777777777777777777777777776666666666666
Q ss_pred HHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003678 158 YISSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 158 ~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l 193 (804)
+...+..+...+......+..+..++..+...+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 251 LEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665554444
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.82 E-value=2.6e-11 Score=144.80 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003678 292 QHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAE 327 (804)
Q Consensus 292 ~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e 327 (804)
..+...+.+....+..++..+..+...+.++...++
T Consensus 1079 ~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1079 SQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444433333
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.81 E-value=2.8e-11 Score=144.63 Aligned_cols=225 Identities=15% Similarity=0.156 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc----ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003678 84 SARELMKFIEEVIDAQRVKTKSIAEAFHEKL----SAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYI 159 (804)
Q Consensus 84 ~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~----~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~ 159 (804)
.++....-+......+..+..++...+.... ..+.....+......+..++..+...+...+.+...+..+.....
T Consensus 856 ~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~ 935 (1930)
T KOG0161|consen 856 KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLE 935 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443321 112333344455555566666666666666666555555555555
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhhhccCCCCCCCCCcchhccHHHHHHHHHH
Q 003678 160 SSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEE 239 (804)
Q Consensus 160 ~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 239 (804)
..+..+...+..++..+..+..+......++..++.++...... ...+.+....++..+..
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~-------------------~~kL~kekk~lEe~~~~ 996 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN-------------------ISKLSKEKKELEERIRE 996 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555554333321110 22222334445566666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh--hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 240 AKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSR--LYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLR 317 (804)
Q Consensus 240 l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~~~~~--~~~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~ 317 (804)
+...+.....+...+.+....+...++++...+.......... ....+..++..+...+..+......+...+.....
T Consensus 997 l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~ 1076 (1930)
T KOG0161|consen 997 LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKES 1076 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666677777777777777776666532222111 11233333333344444444444444444444444
Q ss_pred HHHHHHhhhh
Q 003678 318 REKEINVRAE 327 (804)
Q Consensus 318 ~~~~~~~~~e 327 (804)
.+..+..+.+
T Consensus 1077 El~~l~~k~e 1086 (1930)
T KOG0161|consen 1077 ELSQLQSKLE 1086 (1930)
T ss_pred HHHHHHHHhh
Confidence 4433333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.80 E-value=1.5e-11 Score=152.75 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 003678 91 FIEEVIDAQRVKTKSIAEAFH 111 (804)
Q Consensus 91 kl~~~~~~l~~~~~~l~~el~ 111 (804)
++..+..++.+ +.+...++.
T Consensus 171 ~~~~~~~~l~~-~~~~l~el~ 190 (1164)
T TIGR02169 171 KKEKALEELEE-VEENIERLD 190 (1164)
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 33333333333 333333333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.80 E-value=5.1e-11 Score=148.61 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccCh-----hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003678 85 ARELMKFIEEVIDAQRVKTKSIAEAFHEKLSA-----EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYI 159 (804)
Q Consensus 85 ~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~-----~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~ 159 (804)
+..-..++..+.++|.+ +.|+..++..++.| ..+..|.....+....+.......+..+...+..+...+..+.
T Consensus 167 ~~~~~~~~~~t~~nL~r-~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~ 245 (1179)
T TIGR02168 167 ISKYKERRKETERKLER-TRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQ 245 (1179)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577778888888 88888888887665 3555555444443333333333344444444555555555555
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003678 160 SSHSVDQAEIQHLAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 160 ~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l 193 (804)
..+.....++..+...+..+...+..+...+..+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 279 (1179)
T TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSEL 279 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444444443333
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=3e-10 Score=139.20 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhHhHhhhhHhHHHHHHHHHHHHHHHHHHh
Q 003678 376 IKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQK 455 (804)
Q Consensus 376 ~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ei~~l~~~l~~l~~ 455 (804)
+...+...+..+......+...+..++.....+..++..+..+.... ...+..+...+......+..+...+..+..
T Consensus 696 f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~---~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK---EKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555444555444444444443333332221 112233333333333444444444444444
Q ss_pred hHHHHHHHHHHhccCCCChhcHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 456 DKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKL 535 (804)
Q Consensus 456 ~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~le~el~~l~~~l 535 (804)
.+..+...++.+.....+...+..+..++..+..++..+...+........+..+...+..+...+..+..++..+..+.
T Consensus 773 ~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~ 852 (1311)
T TIGR00606 773 LLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852 (1311)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333223333444555555566666665555554322211233333333334444444433333333333
Q ss_pred HHhHhhHHHH
Q 003678 536 DASERDVMEL 545 (804)
Q Consensus 536 ~~~~~~~~~l 545 (804)
.....++..|
T Consensus 853 e~~~~eI~~L 862 (1311)
T TIGR00606 853 QDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=4.1e-10 Score=140.05 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 003678 85 ARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSV 164 (804)
Q Consensus 85 ~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~~ 164 (804)
...+...|....+.+.+ +.+....|..+... +..+..................+..+...+..+...+..+...+..
T Consensus 172 ~~~~~~~l~~~~~~l~e-l~~~~~~L~~q~~~--l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (1164)
T TIGR02169 172 KEKALEELEEVEENIER-LDLIIDEKRQQLER--LRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248 (1164)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555 65555665554432 2223332222222222222222333333333444444444444444
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003678 165 DQAEIQHLAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 165 ~~~e~~~l~~~l~~l~~el~~~~~~~~~l 193 (804)
...++..+..++..+..++......+..+
T Consensus 249 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 277 (1164)
T TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEEL 277 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=9.9e-10 Score=137.16 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 003678 80 SRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEK 113 (804)
Q Consensus 80 ~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~ 113 (804)
.+...+...+.++...+..+...+..|.......
T Consensus 172 ~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a 205 (1179)
T TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSL 205 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666555544444
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.69 E-value=1.2e-08 Score=120.20 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH----------HHHHHHHHHHH---HHHHHH
Q 003678 507 VKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREA----------EAYIAEMETIG---QAFEDM 573 (804)
Q Consensus 507 ~~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~----------~~l~~e~~~l~---~~~~~l 573 (804)
+..++.....+..++..+..+...|+.++..+.+.+.+|...+...+... ..+...+..+. ..-.-+
T Consensus 1155 v~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L 1234 (1822)
T KOG4674|consen 1155 VSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL 1234 (1822)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 44444455556666666666777777777777777766665554433222 22222222222 222244
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 003678 574 QTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKAC-LTEALRYNS 652 (804)
Q Consensus 574 ~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l-~~~~~~~~~ 652 (804)
+..+......+.++.+.+.++..++..+...+..+..++......+..+.......+.+...+....+.. ...+.++..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4555555555666666666666666666666666666666666666666655555555555544442211 223333333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003678 653 EDRHLAVNLETTKWELADAEKELKWLK 679 (804)
Q Consensus 653 e~~~~~~~~~~~~~~~~~l~~~~~~l~ 679 (804)
++..+...+...+..+.++...+..++
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.69 E-value=1.8e-09 Score=120.17 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 230 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYV-HSSRLYNLVNDQLQHWNVEVERYKALTDSL 308 (804)
Q Consensus 230 ~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~-~~~~~~~~l~~~l~~l~~el~~~~~~~~~l 308 (804)
.+.+..++..++..+......++.++..+......+..|...|...-.. ............+..+...+..+...+...
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555554320000 000111122223444444444444444444
Q ss_pred HHHHHHHHHHHHH-H--HhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 309 LIDRSLVLRREKE-I--NVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKM 364 (804)
Q Consensus 309 ~~e~~~l~~~~~~-~--~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~l 364 (804)
..+...+...+.. + ...-..-.....-+....+.+..++..+..+..++..++..+
T Consensus 203 e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 203 EKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444333222211 0 000000112222233355677777777777777777776654
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=2e-08 Score=123.50 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=52.5
Q ss_pred cchhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh-hhhhhhHHHHHHHHhHHHHHHHHHH
Q 003678 224 ADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKY-VHSSRLYNLVNDQLQHWNVEVERYK 302 (804)
Q Consensus 224 ~~~~~~~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~-~~~~~~~~~l~~~l~~l~~el~~~~ 302 (804)
..+...+..+..++..+.........++..+...+..+..++..+...+..... +...-....+...+..++..+....
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 334455666666777777777777777777777777777777777666665221 1111122334444555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003678 303 ALTDSLLIDRSLVLRRE 319 (804)
Q Consensus 303 ~~~~~l~~e~~~l~~~~ 319 (804)
..+..+..-...+..-+
T Consensus 653 ~~~~~~~~~~~~~~k~i 669 (1311)
T TIGR00606 653 KQRAMLAGATAVYSQFI 669 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.68 E-value=1.1e-08 Score=122.17 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 230 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 272 (804)
Q Consensus 230 ~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l 272 (804)
+..+...+..+...+..+..++..+......+..++..+...+
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l 302 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444443
No 14
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.5e-08 Score=112.64 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 506 RVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSK---DREAEAYIAEMETIGQAFEDMQTQNQHLLQ 582 (804)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~---~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~ 582 (804)
++..+......+..++..+..++..+-..+..+...+.+++...... ...+..++..++.+...+++++..-.. ..
T Consensus 807 ~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~ 885 (1293)
T KOG0996|consen 807 RVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KA 885 (1293)
T ss_pred HHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HH
Confidence 44455555555555555555555555555555555555555442222 234455556677777777777644333 57
Q ss_pred HHHhHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003678 583 QVAERDDLNIKLVSESVKTK-QVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNL 661 (804)
Q Consensus 583 ~~~~l~~~~~~l~~e~~~~~-~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~ 661 (804)
++..++..+..+..+..+.. ..+..+...++.+...+..+...+......+..++..+..+...+...+.++..+...+
T Consensus 886 ~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~ 965 (1293)
T KOG0996|consen 886 RIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEEL 965 (1293)
T ss_pred HHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665443 23455555555555555555555444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003678 662 ETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELEN 705 (804)
Q Consensus 662 ~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~ 705 (804)
........+++.++.+....+..+..++..+...+.........
T Consensus 966 ~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~ 1009 (1293)
T KOG0996|consen 966 KGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENE 1009 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443333333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.65 E-value=1.8e-08 Score=112.36 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=16.7
Q ss_pred HHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003678 155 IENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLK 194 (804)
Q Consensus 155 ~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~ 194 (804)
+..+.+.+.....+...+...+..+..+| .....+..+.
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~ 93 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQ 93 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 33333333333334444444444444454 4444444443
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.64 E-value=4.5e-09 Score=125.57 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 003678 479 EIKESERRAHSQAEVLKNALD 499 (804)
Q Consensus 479 ~l~~~~~~~~~e~~~l~~~l~ 499 (804)
.+...+..+...+..+...++
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.62 E-value=7.8e-08 Score=113.63 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003678 230 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLL 309 (804)
Q Consensus 230 ~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~ 309 (804)
+......+..++..+.....++..++........-+......+.+. ...+...+..+...+..+...+..+.
T Consensus 907 Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~--------~~~~ea~ie~~~~k~tslE~~ls~L~ 978 (1822)
T KOG4674|consen 907 LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDET--------RLELEAKIESLHKKITSLEEELSELE 978 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555555554444444444443331 12333444444444444444444444
Q ss_pred HHHHHHHH
Q 003678 310 IDRSLVLR 317 (804)
Q Consensus 310 ~e~~~l~~ 317 (804)
.++..+..
T Consensus 979 ~~~~~l~~ 986 (1822)
T KOG4674|consen 979 KEIENLRE 986 (1822)
T ss_pred HHHHHHHH
Confidence 44444433
No 18
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=4.1e-08 Score=107.29 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhch-------hhhhhhhh--hHHHHHHHHhHHHHHH
Q 003678 228 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND-------DKYVHSSR--LYNLVNDQLQHWNVEV 298 (804)
Q Consensus 228 ~~~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~-------~~~~~~~~--~~~~l~~~l~~l~~el 298 (804)
..++.+...+.+.+..+......+.........+.........-+.. .....++. ....+..++...+..+
T Consensus 329 ~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~ 408 (1174)
T KOG0933|consen 329 EKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITL 408 (1174)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHH
Confidence 33555555666666666555555555444444343333333333332 22222111 2345677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003678 299 ERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG 372 (804)
Q Consensus 299 ~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~le~~~~~~~ 372 (804)
......+......+..+...+....... ..+..+.......+..++.+.+.++.++..+....+
T Consensus 409 ~~~~t~~k~a~~k~e~~~~elk~~e~e~----------~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 409 SEASTEIKQAKLKLEHLRKELKLREGEL----------ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 7777777777777766666655433222 224445555566677788888888888877755555
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.60 E-value=1.7e-07 Score=113.77 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003678 232 ELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENL 268 (804)
Q Consensus 232 ~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l 268 (804)
.+..++..+...+......+..+......+...+...
T Consensus 299 ~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1163)
T COG1196 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.59 E-value=9.1e-08 Score=114.75 Aligned_cols=14 Identities=7% Similarity=-0.372 Sum_probs=9.0
Q ss_pred CccccCcCCCCCCc
Q 003678 786 KCPGCGTAFGQSDV 799 (804)
Q Consensus 786 ~CP~C~~~~~~~d~ 799 (804)
.+.....||+.-|.
T Consensus 814 ~~lilDEp~~~lD~ 827 (880)
T PRK03918 814 PLLILDEPTPFLDE 827 (880)
T ss_pred CeEEEeCCCcccCH
Confidence 34456778877664
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9e-16 Score=132.02 Aligned_cols=55 Identities=35% Similarity=0.775 Sum_probs=50.8
Q ss_pred cccccccccccCC--ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccccC
Q 003678 749 ILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 749 ~l~C~iC~~~~~~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 804 (804)
.+.||||++.+.. +|.++|||+||..||+..+.+ .++||+||+.+...++++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 3799999999965 677899999999999999994 899999999999999999997
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.7e-07 Score=104.51 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=63.7
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 579 HLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQ-LQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHL 657 (804)
Q Consensus 579 ~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~-l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~ 657 (804)
.+..++..++.++..+..+..+ .+.+..+...+..+-.. ++..+..++.+..++..+...+..+...+......+..+
T Consensus 862 ~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 862 ELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKA 940 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHH
Confidence 3334444555555555422223 45555555555555333 333334444444555555544444444444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 658 AVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVA 725 (804)
Q Consensus 658 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~ 725 (804)
+..+..+...+..++.++..|...+..+.....+++..+.+....+.++......+...+..+...+.
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~ 1008 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSEN 1008 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333333333333333333333333333333333333333
No 23
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.41 E-value=1.2e-13 Score=123.76 Aligned_cols=56 Identities=30% Similarity=0.724 Sum_probs=50.2
Q ss_pred CcccccccccccCCceeccCCCcccHHHHHHHhhc---------------CCCCccccCcCCCCCCccccc
Q 003678 748 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI---------------RHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~---------------~~~~CP~C~~~~~~~d~~~~~ 803 (804)
..+.|+||++.+++||+++|||+||..||..|+.. +...||.|+.++...++.+||
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 34899999999999999999999999999999752 234799999999999999998
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.35 E-value=1.1e-13 Score=159.29 Aligned_cols=54 Identities=30% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003678 518 QQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFE 571 (804)
Q Consensus 518 ~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~ 571 (804)
...+..+...+.+++..++.......++...+......+..+..+++.+...+.
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~ 626 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALE 626 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333333344444444444433333
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.35 E-value=6.1e-13 Score=89.07 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=32.6
Q ss_pred ccccccccCCceeccCCCcccHHHHHHHhhcCCC---Ccccc
Q 003678 752 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR---KCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~---~CP~C 790 (804)
||||.+.|++||+++|||+||..||..++..... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999987554 49998
No 26
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.34 E-value=1.4e-13 Score=158.42 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 83 SSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEI 143 (804)
Q Consensus 83 ~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 143 (804)
+.-+.+-.+.......|.+++++|...|....+...+...+ +.....++..|+..++.
T Consensus 56 e~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~---~kkrE~El~~Lrr~LEe 113 (859)
T PF01576_consen 56 ESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIEL---NKKREAELAKLRRDLEE 113 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHH---HHHHHHHHHHHHHHHHH
Confidence 33344445666677788888888888887765553332222 22224455555554443
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.33 E-value=8.4e-13 Score=99.99 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=49.4
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
+.||||++.+++||+++|||+||..||..|+.. +.+||.||.+|+..|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 689999999999999999999999999999986 77899999999999988764
No 28
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.8e-13 Score=123.99 Aligned_cols=55 Identities=31% Similarity=0.659 Sum_probs=49.6
Q ss_pred CcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 748 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
...+|.+|.+...+|..|||||+||.+||..|...+.- ||.||..|.+++|.-++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCcccccCCCcceeeec
Confidence 44799999999999999999999999999999996544 99999999999987654
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-12 Score=119.45 Aligned_cols=55 Identities=35% Similarity=0.772 Sum_probs=51.4
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhcCCCC--ccccCcCCCCCCccccc
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRK--CPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~--CP~C~~~~~~~d~~~~~ 803 (804)
.+.|.||.+.-++||+|.|||+||..||..|+.++..+ ||+|...++..-|.|||
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 47899999999999999999999999999999986554 89999999999999998
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=6e-06 Score=90.46 Aligned_cols=268 Identities=14% Similarity=0.156 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccCh-----hHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHhHHHHH
Q 003678 86 RELMKFIEEVIDAQRVKTKSIAEAFHEKLSA-----EDAIIQLSKIDDMMK-------EEAKNLHEVMEIIHLKHKEYAD 153 (804)
Q Consensus 86 ~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~-----~~~~~~l~~~~~~~~-------~e~~~l~~~~~~l~~~~~~~~~ 153 (804)
.+.++.+..|...-.. ++.+...+++++.. +++..|-.......- .++......++.+.........
T Consensus 173 eeSlkim~ET~qK~ek-I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 173 EESLKIMEETKQKREK-INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 4555666666555555 66666666665332 355555444444443 3444445555555555444444
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccc-hhhhhccCCCCCCCCCcchhccHHH
Q 003678 154 QIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLV-PAAAMVNGSVSPEKRPADGRMDLQE 232 (804)
Q Consensus 154 e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (804)
+-..+.+.+.....++..+..++.++...+..+.....++...........+.+ .........+..+. ..-..
T Consensus 252 ~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~------q~r~~ 325 (1200)
T KOG0964|consen 252 ESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNE------QQRNL 325 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh------hhhhh
Confidence 445555555555555566666666665555555554444322211111100000 00000000000000 11112
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHhchhhh-hhhhhhH-------HHHHHHHhHHHHH
Q 003678 233 LKDSVEEAKILAADRLSEVEEAQQDNINL-------SKQLENLQNELNDDKY-VHSSRLY-------NLVNDQLQHWNVE 297 (804)
Q Consensus 233 l~~~l~~l~~~~~~~~~el~~l~~~~~~l-------~~el~~l~~~l~~~~~-~~~~~~~-------~~l~~~l~~l~~e 297 (804)
....+..+...+.....++....-....+ ...|..++......-. ......| .=+..++..+..-
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~ 405 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG 405 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence 22233334444444444444444333333 3333333333222100 0000111 1244555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 298 VERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLK 363 (804)
Q Consensus 298 l~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~ 363 (804)
+.........++.++..+...+.........+...... ...++.++......+..+++.+..+
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e---~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINE---TKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655554444444433333 5566777766666666666666655
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.28 E-value=4.8e-13 Score=126.56 Aligned_cols=56 Identities=38% Similarity=0.857 Sum_probs=51.9
Q ss_pred CcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccccC
Q 003678 748 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 804 (804)
..++|.||++.|+-|+|+||||+||.-||..++. .+..||.|..+|...|++.+||
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhH
Confidence 3489999999999999999999999999999999 4888999999999999998764
No 32
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.8e-12 Score=131.93 Aligned_cols=60 Identities=33% Similarity=0.596 Sum_probs=53.6
Q ss_pred HhcCCCcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 743 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 743 ~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
+..++..+.|+||.+.|.+||+++|||+||..||..++.. ...||.|+.+|+..+++++|
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccch
Confidence 4556677999999999999999999999999999999985 56899999999988888776
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.27 E-value=2.3e-05 Score=95.06 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=71.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCh-----hHHHHHHHHHhH--HHHHHHHHHHHHHHHHHH
Q 003678 74 VEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSA-----EDAIIQLSKIDD--MMKEEAKNLHEVMEIIHL 146 (804)
Q Consensus 74 ~~~~l~~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~-----~~~~~~l~~~~~--~~~~e~~~l~~~~~~l~~ 146 (804)
+++++.-+ ....++.++|..+-.++.+ +.++..+|...+.+ +.+..++....+ ....++..+...+..+..
T Consensus 285 iEEAag~r-~rk~eA~kkLe~tE~nL~r-I~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee 362 (1486)
T PRK04863 285 LEEALELR-RELYTSRRQLAAEQYRLVE-MARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEE 362 (1486)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 6778899999999999999 99999999988766 444444444332 224455555555666666
Q ss_pred HhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003678 147 KHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVS 192 (804)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~ 192 (804)
.+......+......+.....++..++.++..+..++......+..
T Consensus 363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~e 408 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDV 408 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555555555555555555555555554444444443333
No 34
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.26 E-value=3.1e-12 Score=85.17 Aligned_cols=38 Identities=45% Similarity=1.096 Sum_probs=33.9
Q ss_pred ccccccccCCc-eeccCCCcccHHHHHHHhhcCCCCcccc
Q 003678 752 CGVCFDRPKEV-VITKCFHLFCNPCIQRNLEIRHRKCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~~-v~~~C~H~fC~~Ci~~~~~~~~~~CP~C 790 (804)
|+||++.+.+| ++++|||+||..|+..++.. ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68899999999999999997 7899998
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-12 Score=119.74 Aligned_cols=57 Identities=32% Similarity=0.579 Sum_probs=50.0
Q ss_pred cCCCcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 745 DCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
.+..++.|-||...|+-|++|+|||+||.-||.+++.+ +..||.|+.+|...-++..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGS 77 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccc
Confidence 45566899999999999999999999999999999995 8999999999876655543
No 36
>PRK01156 chromosome segregation protein; Provisional
Probab=99.24 E-value=2.9e-05 Score=93.03 Aligned_cols=8 Identities=13% Similarity=0.327 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003678 388 SKEMGMME 395 (804)
Q Consensus 388 ~~~~~~l~ 395 (804)
....+.+.
T Consensus 422 ~~~i~~l~ 429 (895)
T PRK01156 422 SSKVSSLN 429 (895)
T ss_pred HHHHHHHH
Confidence 33333333
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.8e-12 Score=128.54 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=52.2
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhcC----CCCccccCcCCCCCCcccccC
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR----HRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~----~~~CP~C~~~~~~~d~~~~~~ 804 (804)
...||||...+.-|+.|.|||+||.+||-.++.+. +++||.|+..|+..||+++||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 57999999999999999999999999999999874 667999999999999999986
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.19 E-value=8.2e-12 Score=96.36 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=46.0
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
.+.||||+..|.+||+++|||+||..||..|+..+...||.||.++...|+.+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 3899999999999999999999999999999998789999999999999988764
No 39
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.17 E-value=1.9e-11 Score=86.74 Aligned_cols=45 Identities=42% Similarity=1.072 Sum_probs=40.5
Q ss_pred ccccccccccCCceeccCCCc-ccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHL-FCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~-fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|+||++.+.+++++||||+ ||..|+.+++. ...+||.||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 579999999999999999999 99999999999 6888999999875
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.16 E-value=4.2e-12 Score=89.67 Aligned_cols=52 Identities=37% Similarity=0.828 Sum_probs=29.2
Q ss_pred CcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 748 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
..++|++|+..++.||.+ .|.|+||..||...+.+ .||.|+.|.-..|++.+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 348999999999999864 99999999999988775 49999999999998754
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-05 Score=84.58 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 003678 122 QLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKM 195 (804)
Q Consensus 122 ~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~ 195 (804)
.|...++.+...+..+......+..++..+...+.........+...+..+...++........+...+...-.
T Consensus 52 ~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~ 125 (698)
T KOG0978|consen 52 ELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALE 125 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666677777777777777777777777777777777777777777777766666666666543
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.14 E-value=9.5e-05 Score=90.34 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 237 VEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 272 (804)
Q Consensus 237 l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l 272 (804)
+..++..+......+..+.....++..+...+...+
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555544444443
No 43
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.08 E-value=3.8e-11 Score=82.61 Aligned_cols=40 Identities=33% Similarity=0.810 Sum_probs=34.7
Q ss_pred cccccccccC---CceeccCCCcccHHHHHHHhhcCCCCccccC
Q 003678 751 KCGVCFDRPK---EVVITKCFHLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 751 ~C~iC~~~~~---~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
.|+||++.|. .++.++|||+||..||..|+.. ..+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999994 4778899999999999999996 67999996
No 44
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.06 E-value=1.2e-10 Score=79.00 Aligned_cols=39 Identities=36% Similarity=0.906 Sum_probs=36.3
Q ss_pred ccccccccCCce-eccCCCcccHHHHHHHhh-cCCCCcccc
Q 003678 752 CGVCFDRPKEVV-ITKCFHLFCNPCIQRNLE-IRHRKCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~~v-~~~C~H~fC~~Ci~~~~~-~~~~~CP~C 790 (804)
|+||.+.+.+++ +++|||.||..|+..++. ....+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 566779998
No 45
>PHA02926 zinc finger-like protein; Provisional
Probab=99.05 E-value=1.1e-10 Score=105.02 Aligned_cols=54 Identities=28% Similarity=0.672 Sum_probs=41.6
Q ss_pred cccccccccccCC---------ceeccCCCcccHHHHHHHhhcC-----CCCccccCcCCCCCCcccc
Q 003678 749 ILKCGVCFDRPKE---------VVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 749 ~l~C~iC~~~~~~---------~v~~~C~H~fC~~Ci~~~~~~~-----~~~CP~C~~~~~~~d~~~~ 802 (804)
...|+||++..-+ .++.+|+|+||..||..|...+ .+.||.||.+|..=-..++
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 4789999987522 4667999999999999999864 3459999999985333333
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.03 E-value=1e-10 Score=77.93 Aligned_cols=36 Identities=31% Similarity=0.805 Sum_probs=23.3
Q ss_pred ccccccccCC----ceeccCCCcccHHHHHHHhhcC---CCCcc
Q 003678 752 CGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR---HRKCP 788 (804)
Q Consensus 752 C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~---~~~CP 788 (804)
||||.+ |.+ |+.++|||+||..|++.++..+ ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 988 9999999999999999999964 44688
No 47
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=1.5e-10 Score=109.54 Aligned_cols=47 Identities=28% Similarity=0.757 Sum_probs=40.6
Q ss_pred cccccccccccCC--------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 749 ILKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 749 ~l~C~iC~~~~~~--------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
...||||++.+.+ +++++|||+||..||..|+. +...||.||.+|..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 4789999998765 35679999999999999998 57789999999874
No 48
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.02 E-value=1.9e-10 Score=78.69 Aligned_cols=41 Identities=32% Similarity=0.916 Sum_probs=35.8
Q ss_pred ccccccccc---CCceeccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 751 KCGVCFDRP---KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 751 ~C~iC~~~~---~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
.|++|...| ..+++++|||+||..|+.... .....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 348899999999999999998 46778999984
No 49
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.96 E-value=0.00013 Score=78.18 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCcccHHHHHHHhhcCCCCccccCcC
Q 003678 768 FHLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 768 ~H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
.|--|..|+.+.+...+.+-|.||.+
T Consensus 632 e~~elvtyL~sqi~~kqtkqpklgrr 657 (1265)
T KOG0976|consen 632 EHPELVTYLPSQIDAKQTKQPKLGRR 657 (1265)
T ss_pred ccHHHHhhchhhhchhcccCCccCCh
Confidence 37779999999999999999999965
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.95 E-value=3.5e-06 Score=82.56 Aligned_cols=206 Identities=17% Similarity=0.241 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVS 596 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 596 (804)
.......++.++..+...+..+...+......+......+..+....+.....+..+..........+..++..+.....
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554555555555555555555555555555555555555566666666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 597 ESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELK 676 (804)
Q Consensus 597 e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~ 676 (804)
....+...+......+..+...+..+...++.....+..++..+..+...+..++..-.........+..++..+...+.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666555555555555555555666666655
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 677 WLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNN 722 (804)
Q Consensus 677 ~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~ 722 (804)
......+..+..+..+...+..+...+......+..+..+++..-.
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666666666655555555555555544433
No 51
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.92 E-value=8e-10 Score=77.42 Aligned_cols=44 Identities=34% Similarity=0.888 Sum_probs=37.8
Q ss_pred cccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCC
Q 003678 751 KCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
.|+||++.+.+++.+ +|||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999666655 59999999999999997678899999764
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=0.00031 Score=78.01 Aligned_cols=151 Identities=12% Similarity=0.104 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHH
Q 003678 526 AEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQ 605 (804)
Q Consensus 526 ~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~ 605 (804)
.++.++..++.....++++-...++....+...+.-+.+.++..+...+.++..+..++..+..++..+...........
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 34455555555555555555555555555555666666666655555555555555555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 606 SFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELK 676 (804)
Q Consensus 606 ~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~ 676 (804)
..+..++......+.....++..+.................+..+..++..+..+-......+..+.....
T Consensus 867 ~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 867 KKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 44455544444444444444444333333333333333444444444444444444444444444444333
No 53
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.88 E-value=1.4e-09 Score=73.49 Aligned_cols=39 Identities=36% Similarity=0.960 Sum_probs=36.4
Q ss_pred ccccccccCCceeccCCCcccHHHHHHHhhcCCCCcccc
Q 003678 752 CGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C 790 (804)
|+||++....+++++|||.||..|+..|+..+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789998
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.4e-09 Score=101.03 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=45.2
Q ss_pred cccccccccccCCceeccCCCcccHHHHHH-HhhcCCCCccccCcCCCCCCc
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQR-NLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~-~~~~~~~~CP~C~~~~~~~d~ 799 (804)
..+|++|++....|+.++|||+||..||-. |-..+.-+||.||.....++|
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 368999999999999999999999999999 655555569999999888876
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.80 E-value=0.00062 Score=75.59 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 288 NDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEA 367 (804)
Q Consensus 288 ~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~le~~ 367 (804)
--.+..++..+++++.....+..++..+..++..+..+-+. ..++++|-.+...+..++.+.+..+.+.+++
T Consensus 256 lmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~--------~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 256 LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--------ATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--------CChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34456677888888888888888888888887655433321 3366778888888888877777777775544
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.79 E-value=0.00063 Score=75.00 Aligned_cols=12 Identities=33% Similarity=0.180 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003678 710 RKKLEEELMEVN 721 (804)
Q Consensus 710 ~~~le~el~~l~ 721 (804)
+..++..+....
T Consensus 409 i~t~E~rL~aa~ 420 (522)
T PF05701_consen 409 IKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.78 E-value=0.00087 Score=75.92 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=12.5
Q ss_pred ceeccCC-CcccHHHHHHHhhcCCCCccc
Q 003678 762 VVITKCF-HLFCNPCIQRNLEIRHRKCPG 789 (804)
Q Consensus 762 ~v~~~C~-H~fC~~Ci~~~~~~~~~~CP~ 789 (804)
+..++=| ..|---|+--.+- ....||+
T Consensus 987 ~~gLSGGERSFsTv~lllsLW-~~me~Pf 1014 (1074)
T KOG0250|consen 987 TRGLSGGERSFSTVCLLLSLW-EVMECPF 1014 (1074)
T ss_pred ccccCcccchHHHHHHHHHHh-HhhcCch
Confidence 3334434 4565566543333 1334775
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.76 E-value=0.0009 Score=75.05 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 249 SEVEEAQQDNINLSKQLENLQNEL 272 (804)
Q Consensus 249 ~el~~l~~~~~~l~~el~~l~~~l 272 (804)
.+|+.|+.....+..-..+|...+
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.75 E-value=0.001 Score=75.38 Aligned_cols=22 Identities=9% Similarity=-0.145 Sum_probs=17.6
Q ss_pred hhhhhhhhHHHHHHHHhhhcCC
Q 003678 4 TVNQLWNLFVDDLILLGVRAGG 25 (804)
Q Consensus 4 ~v~~~w~~l~~~~~~l~~~~~~ 25 (804)
.+-|.|+-=.+||+.+.-+|+-
T Consensus 152 ~~grvVStKk~dl~~vv~~f~I 173 (1074)
T KOG0250|consen 152 ANGRVVSTKKEDLDTVVDHFNI 173 (1074)
T ss_pred ccCccccccHHHHHHHHHHhCc
Confidence 4557888888999998888874
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.75 E-value=1.1e-05 Score=76.35 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=9.2
Q ss_pred CCCCccccCcCCC
Q 003678 783 RHRKCPGCGTAFG 795 (804)
Q Consensus 783 ~~~~CP~C~~~~~ 795 (804)
.-.+||.||....
T Consensus 220 ~iv~CP~CgRILy 232 (239)
T COG1579 220 EIVFCPYCGRILY 232 (239)
T ss_pred CCccCCccchHHH
Confidence 4557999997554
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.74 E-value=0.001 Score=74.62 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 286 LVNDQLQHWNVEVERYKALTDSLLIDRSLVLRR 318 (804)
Q Consensus 286 ~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~ 318 (804)
.....+..+...+..+...+..+..+++.+...
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.74 E-value=0.00082 Score=73.55 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003678 344 ERLEVQLQKSIIEKNDLGLK 363 (804)
Q Consensus 344 ~~l~~~l~~~~~e~~~l~~~ 363 (804)
.++..++..+...++.++.+
T Consensus 227 ~eLr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666666655
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.74 E-value=0.00065 Score=72.31 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 685 SDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAE 726 (804)
Q Consensus 685 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~ 726 (804)
...++.+++..+.-+..+-+.+..+...+-..+..|..++..
T Consensus 415 ~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 415 NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333444444444444444444444444433
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.73 E-value=0.00096 Score=73.58 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhch-h-hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 233 LKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND-D-KYVHSSRLYNLVNDQLQHWNVEVERYKALTDSL 308 (804)
Q Consensus 233 l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~-~-~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l 308 (804)
...+++..+.+......+|.....++..++.++..+...... . ...............+..|..++..++..+...
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666666666666665443322 1 111111112233344455555555555444443
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.72 E-value=3.3e-05 Score=75.68 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVS 596 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 596 (804)
+...+............++..+.+.+..++..+......+......+..+....++.......+.......++.+..+..
T Consensus 20 ~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~ 99 (237)
T PF00261_consen 20 AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQ 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444555555554444444444444444444445555554444444444444444444444444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 597 ESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELK 676 (804)
Q Consensus 597 e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~ 676 (804)
....+.................+..+...++....++..++..+..+. ..+..+...+..++....
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE--------------~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE--------------EELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH--------------HHHHHHHHHHHHhhhhhh
Confidence 443333333333333333333333333333333333333333333333 333333333333333333
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 677 WLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAEL 727 (804)
Q Consensus 677 ~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l 727 (804)
......+.++..+..+...+.+.....+.....+..++..+..+...|...
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444433
No 66
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=0.0017 Score=73.16 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 003678 228 MDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 274 (804)
Q Consensus 228 ~~~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~ 274 (804)
+.+......+...+.........+..+++++..+......+..++..
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666666666666666666665555555544
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.67 E-value=0.0011 Score=70.71 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003678 688 EYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 732 (804)
Q Consensus 688 ~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~ 732 (804)
++.+.+..+.++...+.-...++..+..+-..+...+..|....+
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555443
No 68
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.7e-09 Score=70.28 Aligned_cols=46 Identities=28% Similarity=0.715 Sum_probs=42.3
Q ss_pred ccccccccccCCceeccCCCcc-cHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~f-C~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
-.|+||++...+.|+-.|||+. |+.|--+.+...+..||.||.|+.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4699999999999999999998 999999998877888999999975
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.64 E-value=0.0018 Score=72.18 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003678 541 DVMELEEAMKSKDREAEAYIAEMETIGQAFE---DMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALAR 617 (804)
Q Consensus 541 ~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~---~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~ 617 (804)
....+...+.........+..+++.+...|. .--.....+..++..+......+......-..-+..+......+..
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~ 386 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEE 386 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 3334444444455555555555555555543 1111223333444444444444444443333344445555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 618 QLQQINALVESAKLRILHAEEQMKACLTEALRYN 651 (804)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~ 651 (804)
.+..+......+...+..+...-......+..+.
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333333
No 70
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.9e-08 Score=95.06 Aligned_cols=48 Identities=25% Similarity=0.658 Sum_probs=44.9
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 797 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 797 (804)
-.|+||+.....||+++|||.||+.||+..+.+..+.||+||-+|..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999999998888999999999864
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.57 E-value=0.0022 Score=69.34 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 003678 522 SAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESV 599 (804)
Q Consensus 522 ~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~ 599 (804)
-.+..++..++..+-..+.....+...+..++.+...+...+..+.+..+.....+..+.....++++.+..+...+.
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555555555555555555555555555555555555555555555555555444555555544444333
No 72
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.57 E-value=0.0011 Score=70.58 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhh
Q 003678 399 NRWKETADEALSLREKAVSLKVSLSA 424 (804)
Q Consensus 399 ~~~~~~~~el~~l~~~~~~l~~~l~~ 424 (804)
++.+-+..+...|..++..++.....
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~ 81 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGR 81 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33444444444455555544444433
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.57 E-value=0.0032 Score=70.88 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHH
Q 003678 91 FIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQ 170 (804)
Q Consensus 91 kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~e~~ 170 (804)
-+...+..+.+++..|..-|........-...+. ..+..|+.++..+...+...+..+..+...+.....++.
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~-------~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~Le 1270 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLA-------SATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLE 1270 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHH
Confidence 3445666677766666666654432211111333 334444444444444444444445555545444445555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 003678 171 HLAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 171 ~l~~~l~~l~~el~~~~~~~~~l 193 (804)
.|+.....+..-..++..++..+
T Consensus 1271 sLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1271 SLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555444444444444444333
No 74
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.54 E-value=0.0051 Score=71.81 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCCcccccccccccCCceeccCCCcccHHHHHHH
Q 003678 705 NERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRN 779 (804)
Q Consensus 705 ~~~~~~~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~ 779 (804)
.+...+..++.++...+..+..+.... .-+...|......-+||+|...|...-. --||..|....
T Consensus 635 ~~~~~le~l~~eie~~rk~l~~lq~~s-----~~Y~k~Ie~~~~~~~CplC~r~f~~eee----~ef~~~l~~~i 700 (1294)
T KOG0962|consen 635 EYLDLLERLKGEIEKARKDLAMLQGRS-----ALYRKFIEIACRSHCCPLCQRSFTTEEE----VEFIKKLESKI 700 (1294)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHHhhccCCCccCCccchHHH----HHHHHHHHHHH
Confidence 333444555555555555554444333 3334444444445899999999976443 35777777654
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.53 E-value=2.3e-08 Score=87.55 Aligned_cols=45 Identities=33% Similarity=0.761 Sum_probs=41.1
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
+.|.||...|+.||.+.|||.||..|.-+.+. ...+|..|++...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhc
Confidence 68999999999999999999999999999888 5788999997654
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-08 Score=99.16 Aligned_cols=52 Identities=27% Similarity=0.686 Sum_probs=45.8
Q ss_pred CCCcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCCCC
Q 003678 746 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 797 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 797 (804)
+...+.||||...++...++ .|+|.||+.||...+...+..||.||+..+..
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34448999999999998888 69999999999999999999999999887753
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.48 E-value=0.0051 Score=69.07 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhH
Q 003678 380 FRVMASALSKEMGMMEAQLNRWKETADEALS-LREKAVSLKV 420 (804)
Q Consensus 380 l~~~~~~l~~~~~~l~~~~~~~~~~~~el~~-l~~~~~~l~~ 420 (804)
-+..+..+..++..+...+..+=.+..++.. +..++..|..
T Consensus 196 A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~ 237 (569)
T PRK04778 196 AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKA 237 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344445555555555544444333333333 3334443333
No 78
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.47 E-value=1e-07 Score=73.23 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=32.5
Q ss_pred cccccccccCC-------------ceeccCCCcccHHHHHHHhhcCCCCccccC
Q 003678 751 KCGVCFDRPKE-------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 751 ~C~iC~~~~~~-------------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
.|+||...|.+ .+..+|||.|...||..|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 59999999833 344489999999999999984 66999997
No 79
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.46 E-value=3.6e-07 Score=105.41 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 003678 709 ERKKLEEELMEVNNKVAELTSETG 732 (804)
Q Consensus 709 ~~~~le~el~~l~~~l~~l~~~~~ 732 (804)
.+..++.++..+.++..+|+....
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665543
No 80
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.42 E-value=0.0097 Score=69.60 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003678 511 NEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEE---AMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAER 587 (804)
Q Consensus 511 ~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~---~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l 587 (804)
......+...+..+..+++.++.........+..+.. ........+......+..+...+.+++..+......+.++
T Consensus 825 ~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 825 RKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445555555555555555554444444332 2222223333333444444555555555555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 003678 588 DDLNIKLVSESVKTKQVQSFLLSE 611 (804)
Q Consensus 588 ~~~~~~l~~e~~~~~~~~~~l~~e 611 (804)
...+..+......+...+..+..+
T Consensus 905 ~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 905 LERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred HhhhcchhhhHHHHHHHHHHHHHH
Confidence 555444444444444433333333
No 81
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.42 E-value=2.7e-06 Score=98.29 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=7.0
Q ss_pred CCCcc---cHHHHHHHhh
Q 003678 767 CFHLF---CNPCIQRNLE 781 (804)
Q Consensus 767 C~H~f---C~~Ci~~~~~ 781 (804)
.|..| |..=|..|+.
T Consensus 684 ~~~~~~~~~~~~i~~~v~ 701 (722)
T PF05557_consen 684 LESEFSPELEDLIEFWVE 701 (722)
T ss_dssp E--CCHHCTHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 45567 4444555655
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.41 E-value=0.0041 Score=64.60 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 292 QHWNVEVERYKALTDSLLIDRSLVLRREK 320 (804)
Q Consensus 292 ~~l~~el~~~~~~~~~l~~e~~~l~~~~~ 320 (804)
..|...+..|-..+..|+.+...|...+.
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33344444444444444444444444433
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.40 E-value=0.0035 Score=66.90 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCC
Q 003678 710 RKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKA 748 (804)
Q Consensus 710 ~~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~ 748 (804)
+.++.+++..+...+..|-... ..|..+|..|+.
T Consensus 351 i~~mReec~~l~~Elq~LlD~k-----i~Ld~EI~~YRk 384 (546)
T KOG0977|consen 351 IAKMREECQQLSVELQKLLDTK-----ISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhchH-----hHHHhHHHHHHH
Confidence 4444444444444443332222 334455555544
No 84
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.6e-07 Score=87.88 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=40.0
Q ss_pred ccccccccccc-CC------------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 749 ILKCGVCFDRP-KE------------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 749 ~l~C~iC~~~~-~~------------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
...|.||++.+ .. |..+||||.|-..|++-|.+ |+-+||+||.|..
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 46899999984 22 58899999999999999999 8999999999843
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.37 E-value=0.006 Score=65.00 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 479 EIKESERRAHSQAEVLKNALDEHSLE--LRVKAANEAEAACQQRLSAAEAEIIELVAKLD 536 (804)
Q Consensus 479 ~l~~~~~~~~~e~~~l~~~l~~~~~e--~~~~~~~~~~~~~~~~l~~le~el~~l~~~l~ 536 (804)
.++.....+-.++..|...|...... .|.......+..++.++...+...+.+-.++.
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555556666666655442221 13334444555555555555555554444443
No 86
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.5e-07 Score=89.03 Aligned_cols=45 Identities=31% Similarity=0.645 Sum_probs=41.3
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
+.|.||...|.+||.++|||.||..|.-+.+. +..+|++|+..+-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc
Confidence 57999999999999999999999999999988 6788999997754
No 87
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.32 E-value=3.5e-07 Score=65.69 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=31.0
Q ss_pred CcccccccccccCCceec-cCCCcccHHHHHHHhh-cCCCCccccC
Q 003678 748 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE-IRHRKCPGCG 791 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~-~~~~~CP~C~ 791 (804)
..+.|||....|++||.. .|||+|....|..++. .+...||.-|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 348999999999999886 9999999999999993 3455699943
No 88
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.2e-07 Score=86.47 Aligned_cols=47 Identities=28% Similarity=0.567 Sum_probs=41.0
Q ss_pred cccccccccccCC---ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 749 ILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 749 ~l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
-..|.||+..|.. .+.+||.|.|--+|+..|+--...+||+||.++-
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3689999999853 7788999999999999999966778999999874
No 89
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=3.9e-07 Score=89.08 Aligned_cols=38 Identities=24% Similarity=0.611 Sum_probs=33.6
Q ss_pred cCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 766 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
+|||.||.+|+...+..+...||.|+.++..+++++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 89999999999998876777899999999998877653
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.28 E-value=0.014 Score=65.30 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 286 LVNDQLQHWNVEVERYKALTDSLLIDRSLVLRR 318 (804)
Q Consensus 286 ~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~ 318 (804)
.++.++..+..+....+.+++.+..+...+...
T Consensus 305 qlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 305 QLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444
No 91
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.28 E-value=0.01 Score=63.63 Aligned_cols=6 Identities=50% Similarity=0.445 Sum_probs=2.5
Q ss_pred HHHHHH
Q 003678 51 MFLCRL 56 (804)
Q Consensus 51 ~~~~~l 56 (804)
.|+..|
T Consensus 45 n~~~~l 50 (786)
T PF05483_consen 45 NFLPML 50 (786)
T ss_pred cchhHH
Confidence 344444
No 92
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.26 E-value=5.8e-07 Score=89.14 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=46.3
Q ss_pred CCCcccccccccccCC----ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 746 CKAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
....+.|||+...|.. +++.+|||+||..|+...- ....||.|+.+|...||.+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 3455899999988854 5556999999999999983 355799999999999998874
No 93
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.7e-07 Score=83.18 Aligned_cols=46 Identities=30% Similarity=0.672 Sum_probs=38.7
Q ss_pred ccccccccccCCceec-cCCCcccHHHHHHHhhcC-CCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIR-HRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~-~~~CP~C~~~~~ 795 (804)
..||+|.....-|-+. +|||.||..||.+..... ...||.||.+.-
T Consensus 240 ~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 240 TECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 6899999999987766 699999999999987642 346999998765
No 94
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5e-07 Score=96.98 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=40.5
Q ss_pred CCcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 747 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
...+.|+||.+.|++|++++|||+||..|+..++. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 34489999999999999999999999999999988 5667999994
No 95
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.18 E-value=7.3e-07 Score=61.31 Aligned_cols=48 Identities=31% Similarity=0.602 Sum_probs=40.9
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
...|-.|...-+..++++|||+.|..|..-. |-.-||.|+.+|...|+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 3567788888788999999999999999865 66679999999998775
No 96
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.6e-07 Score=99.65 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=43.0
Q ss_pred ccccccccccCC-----ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKE-----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~-----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
..|+||.+.+.. +..++|||+||..|+..|++ +...||+||..+..+.
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYDYV 344 (543)
T ss_pred CeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhccc
Confidence 689999999988 89999999999999999999 7899999999665544
No 97
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.16 E-value=0.014 Score=60.56 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=3.3
Q ss_pred hHHhHhcC
Q 003678 739 LQDEIKDC 746 (804)
Q Consensus 739 l~~e~~~~ 746 (804)
|..+|..|
T Consensus 295 Ld~EIatY 302 (312)
T PF00038_consen 295 LDAEIATY 302 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 98
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.16 E-value=0.052 Score=66.91 Aligned_cols=179 Identities=8% Similarity=0.085 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003678 80 SRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAI---IQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIE 156 (804)
Q Consensus 80 ~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~---~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~ 156 (804)
.++..+...+..+...+..+..++..|..........-... .........+...+..+...+.........+...+.
T Consensus 300 kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeele 379 (1486)
T PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQE 379 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555565666666666666666655553221110 012334444445555555555555555555555555
Q ss_pred HHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhhhccCCCCCCCCCcchhccHHHHHHH
Q 003678 157 NYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDS 236 (804)
Q Consensus 157 ~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (804)
.+...+..++.++..+..++.++...+......+..+...+....+... .-+...+ ..+.+...
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~-----~~~~~~~-----------SdEeLe~~ 443 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQ-----LCGLPDL-----------TADNAEDW 443 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCCC-----------CHHHHHHH
Confidence 5555555555555555555555555555555555444333322211100 0000111 13445555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 003678 237 VEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELND 274 (804)
Q Consensus 237 l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~ 274 (804)
+......+.....++..++.++..+...+..+......
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555443
No 99
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.9e-07 Score=87.33 Aligned_cols=47 Identities=23% Similarity=0.672 Sum_probs=41.9
Q ss_pred cccccccccccCCceeccCCCcc-cHHHHHHHhhcCCCCccccCcCCCC
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~f-C~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
--.|-||+...++++++||.|+. |..|.+..- .-+++||+||.+|..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 35899999999999999999999 999999874 347889999999975
No 100
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.15 E-value=7e-07 Score=87.34 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=43.0
Q ss_pred cccccccccCCceeccCCCcccHHHHHHHhhcC-CCCccccCcCCCCCC
Q 003678 751 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTAFGQSD 798 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~-~~~CP~C~~~~~~~d 798 (804)
-|.||.++-|++.|-||||+.|..|+..|-... +..||.||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 599999999999999999999999999998655 678999998877654
No 101
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=90.39 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=43.7
Q ss_pred CCcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 747 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
...+.|.||+..+-.||.+||||+||..||.+.+. ....||.|+.+|-.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 55689999999999999999999999999999877 56679999998864
No 102
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.12 E-value=6.6e-07 Score=86.56 Aligned_cols=53 Identities=25% Similarity=0.685 Sum_probs=44.6
Q ss_pred cCCCcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 745 DCKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
++..-+.|.+|.--|.|+.++ -|.|+||.+||-.++.. ...||.|+..++...
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 344458999999999885544 89999999999999996 888999999888753
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.09 E-value=0.0057 Score=69.05 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003678 660 NLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 731 (804)
Q Consensus 660 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~ 731 (804)
+.+.+-..+..++.....|...|..-.+---++-..+.+..++++-....+..-+.+|..|+.+|..+-.+.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444455555554444444566667778888888888888888888888888887776665
No 104
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-06 Score=85.84 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=39.3
Q ss_pred ccccccccccCC---ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|.||.+.|.. .+++||+|.|-..||+.|+....+.||.|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 589999999975 7889999999999999999964344999987554
No 105
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.6e-07 Score=85.01 Aligned_cols=42 Identities=31% Similarity=0.852 Sum_probs=37.3
Q ss_pred ccccccccccCCceeccCCCcc-cHHHHHHHhhcCCCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~f-C~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
.-|.||++...+-++++|||+. |..|-. |...||+||..+..
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHHHH
Confidence 4699999999999999999999 999998 55689999987654
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.05 E-value=0.0064 Score=69.19 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003678 643 CLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENE 706 (804)
Q Consensus 643 l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 706 (804)
+...+..+...+......+.........++.++..+.........++..+...+.++...+...
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555555544444444444444444444444443
No 107
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.043 Score=61.51 Aligned_cols=10 Identities=0% Similarity=-0.220 Sum_probs=4.7
Q ss_pred cccHHHHHHH
Q 003678 770 LFCNPCIQRN 779 (804)
Q Consensus 770 ~fC~~Ci~~~ 779 (804)
+.|.-|+=-.
T Consensus 1104 svvALaLIFa 1113 (1200)
T KOG0964|consen 1104 SVVALALIFA 1113 (1200)
T ss_pred HHHHHHHHHH
Confidence 3455555433
No 108
>PRK11637 AmiB activator; Provisional
Probab=98.02 E-value=0.013 Score=63.46 Aligned_cols=18 Identities=0% Similarity=0.111 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003678 479 EIKESERRAHSQAEVLKN 496 (804)
Q Consensus 479 ~l~~~~~~~~~e~~~l~~ 496 (804)
.+..++..+..++..++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEK 61 (428)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.99 E-value=0.0085 Score=68.20 Aligned_cols=9 Identities=11% Similarity=-0.068 Sum_probs=4.5
Q ss_pred CccccCcCC
Q 003678 786 KCPGCGTAF 794 (804)
Q Consensus 786 ~CP~C~~~~ 794 (804)
....+..||
T Consensus 498 ~~lilDEp~ 506 (562)
T PHA02562 498 NLLILDEVF 506 (562)
T ss_pred CeEEEeccc
Confidence 344455555
No 110
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.97 E-value=4.8e-06 Score=63.95 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=35.3
Q ss_pred ccccccccccC-----------C-c-eeccCCCcccHHHHHHHhhcC--CCCccccCcCCCC
Q 003678 750 LKCGVCFDRPK-----------E-V-VITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~-----------~-~-v~~~C~H~fC~~Ci~~~~~~~--~~~CP~C~~~~~~ 796 (804)
-.|+||...|. + | |.-.|+|.|-..||..|+.+. +..||+||.+|..
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 35666655553 2 3 333899999999999999963 4579999999864
No 111
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.95 E-value=3.2e-06 Score=79.38 Aligned_cols=43 Identities=37% Similarity=0.756 Sum_probs=39.0
Q ss_pred ccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 750 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
+.||.|+....+++-| -|||+||..||..-+-....+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999999 589999999999877766788999976
No 112
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=5.5e-06 Score=75.81 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=46.2
Q ss_pred cccccccccccCC----ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 749 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 749 ~l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
.+.||||.+.+.+ +|+-||||+||..|+...+. ...-||+|+.+....||..+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 4789999999988 55669999999999999988 46679999999999998754
No 113
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.92 E-value=2.2e-06 Score=98.76 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCccccCcCCC
Q 003678 783 RHRKCPGCGTAFG 795 (804)
Q Consensus 783 ~~~~CP~C~~~~~ 795 (804)
|+|-||.-|.+..
T Consensus 692 rqR~~~~~r~~~~ 704 (713)
T PF05622_consen 692 RQRQATNARRGPS 704 (713)
T ss_dssp -------------
T ss_pred HhhccccCCCCCC
Confidence 6666665544443
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=2.1e-06 Score=91.34 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=41.7
Q ss_pred ccccccccccCCcee-c--cCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccc
Q 003678 750 LKCGVCFDRPKEVVI-T--KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 801 (804)
Q Consensus 750 l~C~iC~~~~~~~v~-~--~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~ 801 (804)
..||+|...|.+..+ . +|+|.||..||.+|... -..||.|+..|+.-+|.-
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeeec
Confidence 368889888877333 3 89999999999999884 667999999999877654
No 115
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.88 E-value=0.018 Score=52.03 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhH
Q 003678 521 LSAAEAEIIELVAKLDASERDV 542 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~ 542 (804)
+..++..-..|..+...+...+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~v 31 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSV 31 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 116
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.87 E-value=0.082 Score=59.19 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 285 NLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRR 318 (804)
Q Consensus 285 ~~l~~~l~~l~~el~~~~~~~~~l~~e~~~l~~~ 318 (804)
......+..+...+..+...+..+..+++.+...
T Consensus 97 ~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~ 130 (560)
T PF06160_consen 97 KKAKQAIKEIEEQLDEIEEDIKEILDELDELLES 130 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 117
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.87 E-value=4.9e-06 Score=84.64 Aligned_cols=52 Identities=29% Similarity=0.750 Sum_probs=43.9
Q ss_pred CCcccccccccccCCceeccCCCcccHHHHHHHhh----cCCCCccccCcCCCCCC
Q 003678 747 KAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE----IRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~----~~~~~CP~C~~~~~~~d 798 (804)
.....|.+|++.-.+++-++|-|+||.-||..+.. ..+-+||.|..+++..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34478999999999999999999999999976665 34567999999887654
No 118
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.074 Score=57.81 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 003678 710 RKKLEEELMEVNNKVAELTSE 730 (804)
Q Consensus 710 ~~~le~el~~l~~~l~~l~~~ 730 (804)
+..++.++..+..+..+++..
T Consensus 602 v~qlk~ev~s~ekr~~rlk~v 622 (716)
T KOG4593|consen 602 VAQLKKEVESAEKRNQRLKEV 622 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 119
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.83 E-value=0.021 Score=51.36 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003678 604 VQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVT 683 (804)
Q Consensus 604 ~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~ 683 (804)
++...-..+.....++.......+.-...+..+...++.+...+..+...-..+....+.....+..+...+.+....-.
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33344444444555555555555555555555555555555555444444444444444444444444443333333333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 684 SSDKEYEQIQRKTEDMRKELENERNERKKLEEELME 719 (804)
Q Consensus 684 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~ 719 (804)
..++.+..+...+..+...+......+..+...|+.
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333333333333333
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.82 E-value=0.098 Score=58.37 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=18.9
Q ss_pred HHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 003678 157 NYISSHSVDQAEIQHLAGELEETMAELEESRRKLVSLKM 195 (804)
Q Consensus 157 ~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~ 195 (804)
.+......+..++..+..+.......+..+...+..++.
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555543
No 121
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.81 E-value=4.2e-06 Score=96.44 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred ceeccCCCcccHHHHHHHhhc
Q 003678 762 VVITKCFHLFCNPCIQRNLEI 782 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~ 782 (804)
..++..+|-+...|-..-...
T Consensus 657 kLi~sa~y~~g~~~~~~~~~~ 677 (713)
T PF05622_consen 657 KLIVSAWYNLGMRLHREAMES 677 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555444433
No 122
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.80 E-value=0.081 Score=56.85 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003678 236 SVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELN 273 (804)
Q Consensus 236 ~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~ 273 (804)
++.+..+.+..+..+=++|.++...-...|..|+.+.+
T Consensus 447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555555555555555555555555443
No 123
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.79 E-value=0.055 Score=61.32 Aligned_cols=12 Identities=17% Similarity=-0.122 Sum_probs=5.3
Q ss_pred CCCCchhHHHHH
Q 003678 44 PSGPPEDMFLCR 55 (804)
Q Consensus 44 ~~~~~~~~~~~~ 55 (804)
|+...|-+|-+|
T Consensus 162 pvv~~g~~~~~y 173 (697)
T PF09726_consen 162 PVVTLGFGFKSY 173 (697)
T ss_pred ceeEeeccHHHH
Confidence 344444444444
No 124
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.74 E-value=5.5e-06 Score=75.36 Aligned_cols=49 Identities=33% Similarity=0.821 Sum_probs=39.1
Q ss_pred ccccccc-cccCCc--eec--c-CCCcccHHHHHHHhhcCCCCcc--ccCcCCCCCC
Q 003678 750 LKCGVCF-DRPKEV--VIT--K-CFHLFCNPCIQRNLEIRHRKCP--GCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~-~~~~~~--v~~--~-C~H~fC~~Ci~~~~~~~~~~CP--~C~~~~~~~d 798 (804)
-.||+|. ++|-+| +++ | |+|..|.+|+++.+.++...|| .|++.+....
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 4899995 667553 333 5 9999999999999999999999 8997665443
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.69 E-value=0.14 Score=56.81 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=31.9
Q ss_pred hHhHhhhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccCCCChhcHHHHHHHHHHHHHHHHHHHHhhch
Q 003678 427 NEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDE 500 (804)
Q Consensus 427 ~~~~~~~~~~~~~~~ei~~l~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~l~~ 500 (804)
..+..+...+.....++.........+.....-.+..++++. .....+..|..-+......+..|..+.+.
T Consensus 349 ~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~---d~e~ni~kL~~~v~~s~~rl~~L~~qWe~ 419 (594)
T PF05667_consen 349 AEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP---DAEENIAKLQALVEASEQRLVELAQQWEK 419 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444443333333333222 11244455666555566666666655544
No 126
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.67 E-value=1.9e-05 Score=83.07 Aligned_cols=53 Identities=32% Similarity=0.709 Sum_probs=46.6
Q ss_pred CCCcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 746 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
+...+.|++|+..+.+|+.+ .|||.||..|+..|... +-+||.|+........
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhc
Confidence 56679999999999999995 99999999999999996 8889999887766553
No 127
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.65 E-value=0.072 Score=52.24 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHhhHHHH
Q 003678 528 IIELVAKLDASERDVMEL 545 (804)
Q Consensus 528 l~~l~~~l~~~~~~~~~l 545 (804)
+..++.+.+.+..++..+
T Consensus 57 ~~elr~~rdeineev~el 74 (294)
T COG1340 57 AQELREERDEINEEVQEL 74 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 128
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.64 E-value=0.039 Score=52.80 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=19.8
Q ss_pred ccccccccccCC----ceeccCCCcccHHHHHHHh
Q 003678 750 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNL 780 (804)
Q Consensus 750 l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~ 780 (804)
..|+-|+-.+.. -|+.+=--+||..|..-.+
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRILy 232 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRILY 232 (239)
T ss_pred CcccCCeeeecHHHHHHHhcCCCCccCCccchHHH
Confidence 479999766654 3444555677888865443
No 129
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.2e-05 Score=79.04 Aligned_cols=48 Identities=27% Similarity=0.698 Sum_probs=39.7
Q ss_pred cccccccccccCCce-----e---ccCCCcccHHHHHHHhhcCC------CCccccCcCCCC
Q 003678 749 ILKCGVCFDRPKEVV-----I---TKCFHLFCNPCIQRNLEIRH------RKCPGCGTAFGQ 796 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v-----~---~~C~H~fC~~Ci~~~~~~~~------~~CP~C~~~~~~ 796 (804)
...|.||++...+.+ . .+|.|.||..||..|-..++ +.||.||.+...
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 468999999987766 3 47999999999999986655 779999987654
No 130
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.56 E-value=0.22 Score=55.40 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhH
Q 003678 442 EIKSLKALIEKLQKDK 457 (804)
Q Consensus 442 ei~~l~~~l~~l~~~~ 457 (804)
++..|..++..+...+
T Consensus 329 el~~l~~~l~~l~~~i 344 (594)
T PF05667_consen 329 ELEELQEQLDELESQI 344 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 131
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.23 Score=54.81 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003678 700 RKELENERNERKKLEEELMEVNNKVAELTSET 731 (804)
Q Consensus 700 ~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~ 731 (804)
..+-+++........+.+..+++.++.|+...
T Consensus 910 kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 910 KQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 33334444445555566666666666665443
No 132
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=2.3e-05 Score=77.34 Aligned_cols=43 Identities=33% Similarity=0.720 Sum_probs=35.4
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
.-|.||.+.+++.+.+||||+.| |..-... -.+||.||..+..
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred CceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 57999999999999999999997 6655444 3459999988765
No 133
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.4e-05 Score=77.39 Aligned_cols=48 Identities=21% Similarity=0.603 Sum_probs=39.6
Q ss_pred cccccccccccC-----------------CceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 749 ILKCGVCFDRPK-----------------EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 749 ~l~C~iC~~~~~-----------------~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
..-|+||+.... +-..|||.|+|-..|+..|..++.-.||.||.++-+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 467999987752 234579999999999999999877789999998753
No 134
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.26 Score=53.93 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 003678 664 TKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDM 699 (804)
Q Consensus 664 ~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 699 (804)
++..+.++..+...-..+++....++.+++..+...
T Consensus 547 ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.42 E-value=5.3e-05 Score=76.30 Aligned_cols=45 Identities=24% Similarity=0.624 Sum_probs=36.8
Q ss_pred CcccccccccccCCc----eeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 748 AILKCGVCFDRPKEV----VITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~----v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
...+||||.+++.+. +.+.|.|.|-..|+..|.. ..||.||-.-.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 347999999999763 4558999999999999955 48999986655
No 136
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.42 E-value=0.00011 Score=49.76 Aligned_cols=44 Identities=25% Similarity=0.658 Sum_probs=23.3
Q ss_pred ccccccccC--Cceec--cCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 752 CGVCFDRPK--EVVIT--KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 752 C~iC~~~~~--~~v~~--~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
||+|...+. +..+. +||+.+|..|......+....||.|+.++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 788987773 33334 799999999999998867888999999873
No 137
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.39 E-value=0.00014 Score=53.85 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=36.8
Q ss_pred ccccccccccCC----ce-eccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 750 LKCGVCFDRPKE----VV-ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 750 l~C~iC~~~~~~----~v-~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
-.||.|.-.+.. |+ .=.|.|.|-..||.+|+.+ ..-||.|+.+|...|.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~~ 85 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLADG 85 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEecc
Confidence 367777654432 33 3389999999999999998 5559999999976553
No 138
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=4.9e-05 Score=73.32 Aligned_cols=53 Identities=23% Similarity=0.454 Sum_probs=44.9
Q ss_pred ccccccccccCC-ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 750 LKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 750 l~C~iC~~~~~~-~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
-.||+|.....+ .|+..-|-+||.+||-++.. ....||+.+.|....++.++|
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 589999777665 55556799999999999999 477899999999998888776
No 139
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.31 E-value=0.23 Score=49.75 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 003678 553 DREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSE 597 (804)
Q Consensus 553 ~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 597 (804)
..++.....++..+..++.+++..+..+..+...+......+..+
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444433333
No 140
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.30 E-value=0.36 Score=52.02 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003678 712 KLEEELMEVNNKVAELTS 729 (804)
Q Consensus 712 ~le~el~~l~~~l~~l~~ 729 (804)
.+...+..+..+...+..
T Consensus 401 ~~~~~~~~~~~~~~el~~ 418 (629)
T KOG0963|consen 401 GLSGRITELSKKGEELEA 418 (629)
T ss_pred ccchhHHHHHhhhhhhHH
Confidence 333344444444444433
No 141
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00014 Score=70.50 Aligned_cols=45 Identities=29% Similarity=0.633 Sum_probs=40.6
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..||||.-..-+.|+.||||.-|..||..++-+ ...|-.|...+.
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 579999999999999999999999999999985 555999988776
No 142
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.38 Score=51.40 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccCCCChhcHHHHHHHHHHHHHHHHHHHHhhch
Q 003678 435 KCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDE 500 (804)
Q Consensus 435 ~~~~~~~ei~~l~~~l~~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~l~~ 500 (804)
.+.....++.....+++.++....+|+..++.. .-...++.....+...+...+..+...++.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q---~iS~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ---GISGEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666666666666666666433 222344555666666666666666665544
No 143
>PRK09039 hypothetical protein; Validated
Probab=97.22 E-value=0.11 Score=53.89 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 527 EIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 574 (804)
Q Consensus 527 el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~ 574 (804)
++.....+++.+..+|..|-..+.--......+...+..+...+..++
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~ 94 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE 94 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443334444444444444444444333
No 144
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.20 E-value=0.3 Score=48.99 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 551 SKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK 630 (804)
Q Consensus 551 ~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~ 630 (804)
....+-+....+...+.+.+...+..+..+..+...+...+..+..+...++....++......+......++.+.-.++
T Consensus 113 ~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 113 KARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444555555555555555555555555555555555554444433333333333333
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 003678 631 LRILHAEEQ---MKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKT 696 (804)
Q Consensus 631 ~~~~~le~~---~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~ 696 (804)
.....++.. +..-...+....+++.............+......+......+..-...+..-..++
T Consensus 193 ~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~l 261 (499)
T COG4372 193 LRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQL 261 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 332222222 222223333334444444444444444444444444444444443333333333333
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.19 E-value=0.6 Score=52.29 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhh
Q 003678 442 EIKSLKALIEKLQKD 456 (804)
Q Consensus 442 ei~~l~~~l~~l~~~ 456 (804)
.|..+...+..+...
T Consensus 123 rL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 123 RLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 146
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.75 Score=52.88 Aligned_cols=44 Identities=11% Similarity=0.305 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 229 DLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNEL 272 (804)
Q Consensus 229 ~~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l 272 (804)
.+..+.+++..+....+....++.....+......++..+...+
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i 278 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKI 278 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444444444444444433333
No 147
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.14 E-value=0.19 Score=45.56 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 650 YNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTS 729 (804)
Q Consensus 650 ~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~ 729 (804)
.+..+..+...+..+...+..+...-..+....+.++..++.+..++.+....-+.....+..++..++.|..++...+.
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 33333444444444455555555555556666666666677777777666666666666677777777777776666655
Q ss_pred hh
Q 003678 730 ET 731 (804)
Q Consensus 730 ~~ 731 (804)
.+
T Consensus 187 ky 188 (205)
T KOG1003|consen 187 KY 188 (205)
T ss_pred HH
Confidence 54
No 148
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.51 Score=50.45 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003678 521 LSAAEAEIIELV 532 (804)
Q Consensus 521 l~~le~el~~l~ 532 (804)
+..+..++..+.
T Consensus 348 l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 348 LNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 149
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.62 Score=51.20 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.7
Q ss_pred cCCCCCCccccc
Q 003678 792 TAFGQSDVRFVK 803 (804)
Q Consensus 792 ~~~~~~d~~~~~ 803 (804)
..|-.+||.-+|
T Consensus 710 isf~pGDII~V~ 721 (1118)
T KOG1029|consen 710 ISFEPGDIIIVF 721 (1118)
T ss_pred ccccCCCEEEEe
Confidence 456666665443
No 150
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.09 E-value=0.96 Score=52.82 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=3.7
Q ss_pred ccccccc
Q 003678 749 ILKCGVC 755 (804)
Q Consensus 749 ~l~C~iC 755 (804)
.+.|..|
T Consensus 915 e~~~k~~ 921 (1317)
T KOG0612|consen 915 ELTCKDC 921 (1317)
T ss_pred HHHHHHH
Confidence 3555555
No 151
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.09 E-value=0.33 Score=47.40 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=18.1
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003678 582 QQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQ 620 (804)
Q Consensus 582 ~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~ 620 (804)
..+..+.+.+.-|...+.++...+.+|..+.......+.
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr 175 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR 175 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555444444444433
No 152
>PRK09039 hypothetical protein; Validated
Probab=97.08 E-value=0.17 Score=52.50 Aligned_cols=9 Identities=11% Similarity=-0.334 Sum_probs=4.2
Q ss_pred eccCCCccc
Q 003678 764 ITKCFHLFC 772 (804)
Q Consensus 764 ~~~C~H~fC 772 (804)
+.--||+=+
T Consensus 265 I~I~GHTD~ 273 (343)
T PRK09039 265 LRVDGHTDN 273 (343)
T ss_pred EEEEEecCC
Confidence 334555544
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.05 E-value=0.28 Score=45.96 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003678 713 LEEELMEVNN 722 (804)
Q Consensus 713 le~el~~l~~ 722 (804)
+..++..+..
T Consensus 176 l~~ei~~L~~ 185 (194)
T PF15619_consen 176 LQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 154
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00055 Score=68.53 Aligned_cols=42 Identities=29% Similarity=0.813 Sum_probs=33.3
Q ss_pred ccccccccccCC---ceeccCCCcccHHHHHHHhhc-------CCCCccccC
Q 003678 750 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI-------RHRKCPGCG 791 (804)
Q Consensus 750 l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~-------~~~~CP~C~ 791 (804)
+.|.||++.+.- -+.+||+|+||..|...++.. ..-+||-|+
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 789999988865 556699999999999999875 233587654
No 155
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.03 E-value=0.88 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=11.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhH
Q 003678 434 DKCVEQMAEIKSLKALIEKLQKDK 457 (804)
Q Consensus 434 ~~~~~~~~ei~~l~~~l~~l~~~~ 457 (804)
..+.....++..+..++..++...
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~ 382 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKY 382 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555554433
No 156
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.02 E-value=1.3 Score=53.29 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=16.2
Q ss_pred CceeccCCCcc--cHHHHHHHhhcCCCC--ccc--cCcCCCCCC
Q 003678 761 EVVITKCFHLF--CNPCIQRNLEIRHRK--CPG--CGTAFGQSD 798 (804)
Q Consensus 761 ~~v~~~C~H~f--C~~Ci~~~~~~~~~~--CP~--C~~~~~~~d 798 (804)
.+..++=|-.| +..+--.....-+.. ||. =..|||.=|
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD 855 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLD 855 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCC
Confidence 34444555555 444433333322222 443 335555444
No 157
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00017 Score=52.84 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=28.3
Q ss_pred ceec-cCCCcccHHHHHHHhhcCC--CCccccCcCCCC
Q 003678 762 VVIT-KCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQ 796 (804)
Q Consensus 762 ~v~~-~C~H~fC~~Ci~~~~~~~~--~~CP~C~~~~~~ 796 (804)
|.+. .|.|.|=..||..|+.+.. ..||+||..|..
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4433 7999999999999998644 459999998864
No 158
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.99 E-value=0.00024 Score=79.42 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=40.9
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCC-CccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~-~CP~C~~~~~~~d 798 (804)
..|++|.+ ...+++++|||.||..|+...+..... .||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 999999999999999999999886444 4999997665443
No 159
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00047 Score=69.13 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=51.7
Q ss_pred cCCCcccccccccccCC---ceeccCCCcccHHHHHHHhhcCC--CCccccCcCCCCCCcccccC
Q 003678 745 DCKAILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~~~--~~CP~C~~~~~~~d~~~~~~ 804 (804)
.+...+.|||-.+--.+ |+.+.|||+.|..=+.+...++. .|||=|-.--...|.++|||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 46677899997554433 89999999999999999999776 68999999999999999997
No 160
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.97 E-value=0.028 Score=45.97 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 560 IAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEE 638 (804)
Q Consensus 560 ~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~ 638 (804)
..|+..+..+|.........+..++..++..+.++..++.+..+.|+.+.+.++.+..++..+...+......+..+..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999888888776666655554
No 161
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0004 Score=65.39 Aligned_cols=34 Identities=29% Similarity=0.803 Sum_probs=30.4
Q ss_pred cccccccccccCCceeccC----CCcccHHHHHHHhhc
Q 003678 749 ILKCGVCFDRPKEVVITKC----FHLFCNPCIQRNLEI 782 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C----~H~fC~~Ci~~~~~~ 782 (804)
.++|++|++++.|+-+.-| .|.|||.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3899999999999888877 699999999999884
No 162
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.86 E-value=0.67 Score=47.27 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 643 CLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNN 722 (804)
Q Consensus 643 l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~ 722 (804)
+...+.-.......++..+.....-...+..++..+...+..++++...+..........+-.+-........++..+..
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~ 293 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKK 293 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444445555555555555555555555555555555555555555555555556666666666
Q ss_pred HHHHhhh
Q 003678 723 KVAELTS 729 (804)
Q Consensus 723 ~l~~l~~ 729 (804)
++..|..
T Consensus 294 k~~kLe~ 300 (309)
T PF09728_consen 294 KIEKLEK 300 (309)
T ss_pred HHHHHHH
Confidence 5555543
No 163
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.78 E-value=0.32 Score=42.46 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 603 QVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQ 639 (804)
Q Consensus 603 ~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~ 639 (804)
..+..+.+++.........+....+..+..+..+...
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e 60 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEE 60 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.70 E-value=0.31 Score=48.96 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=16.7
Q ss_pred cccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 770 LFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 770 ~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
+.-..=+...+......|+.=..|-+..|+
T Consensus 248 v~s~kQv~~ll~~~~~~~~~~~~~~s~sdL 277 (319)
T PF09789_consen 248 VMSAKQVKELLESESNGCSLPASPQSISDL 277 (319)
T ss_pred cccHHHHHHHHhcccccCCCCCCcchHHHH
Confidence 345566777776666666444444444443
No 165
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.70 E-value=1.2 Score=48.13 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEA----MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNI 592 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~----l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 592 (804)
++.++..++..+..++..+.....+...+... ......++..+..+++..+..+..++.++..+..++........
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444444444444444444444443333322 33334445555555555555555555555555544443221111
Q ss_pred HHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003678 593 KLV-SESVKTKQVQSFLLSEKQALARQLQQINA----LVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWE 667 (804)
Q Consensus 593 ~l~-~e~~~~~~~~~~l~~e~~~l~~~l~~~~~----~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 667 (804)
.-. .++......+.+....+..+...+..++. ..+.....|..++.++......++.+...+... ..++.++.+
T Consensus 274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~E 352 (629)
T KOG0963|consen 274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKE 352 (629)
T ss_pred hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHH
Confidence 110 11222222223333333334333333322 233344455555555555555555555544433 334444443
Q ss_pred H
Q 003678 668 L 668 (804)
Q Consensus 668 ~ 668 (804)
+
T Consensus 353 L 353 (629)
T KOG0963|consen 353 L 353 (629)
T ss_pred H
Confidence 3
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.69 E-value=0.56 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 706 ERNERKKLEEELMEVNNKVAELTS 729 (804)
Q Consensus 706 ~~~~~~~le~el~~l~~~l~~l~~ 729 (804)
.......+..++..+...+..+..
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544443
No 167
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.65 E-value=0.00095 Score=66.52 Aligned_cols=44 Identities=32% Similarity=0.772 Sum_probs=38.2
Q ss_pred CcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 748 AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..+.||||...+.-|+.- .=||+.|.+|-.. ...+||.|+.+||
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccc
Confidence 347999999999998877 6799999999975 4567999999999
No 168
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.56 E-value=0.46 Score=41.47 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 606 SFLLSEKQALARQLQQINALVESA 629 (804)
Q Consensus 606 ~~l~~e~~~l~~~l~~~~~~~~~~ 629 (804)
..+..++..+...+...+..+..+
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333
No 169
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.56 E-value=0.0083 Score=50.13 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=43.5
Q ss_pred CcccccccccccCCceecc----CCCcccHHHHHHHhhc--CCCCccccCcCCCCCC
Q 003678 748 AILKCGVCFDRPKEVVITK----CFHLFCNPCIQRNLEI--RHRKCPGCGTAFGQSD 798 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~----C~H~fC~~Ci~~~~~~--~~~~CP~C~~~~~~~d 798 (804)
....|.||.+...+...++ ||-..|+.|.-..|+. -...||.|...|..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4579999999999988884 9999999999999885 3567999999998654
No 170
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0011 Score=63.25 Aligned_cols=35 Identities=26% Similarity=0.792 Sum_probs=31.7
Q ss_pred cCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcc
Q 003678 766 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 800 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~ 800 (804)
+|||..|.+|++..+..+...||.|+.+...+.++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 99999999999999999999999999988766654
No 171
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.00069 Score=71.30 Aligned_cols=38 Identities=32% Similarity=0.739 Sum_probs=31.8
Q ss_pred CcccccccccccC----CceeccCCCcccHHHHHHHhhcCCCCcc
Q 003678 748 AILKCGVCFDRPK----EVVITKCFHLFCNPCIQRNLEIRHRKCP 788 (804)
Q Consensus 748 ~~l~C~iC~~~~~----~~v~~~C~H~fC~~Ci~~~~~~~~~~CP 788 (804)
..+.|+||...|. .||.+-|||+.|..|+...+. +.||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 3479999977774 499999999999999998855 5788
No 172
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.39 E-value=0.59 Score=48.89 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003678 138 HEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRK 189 (804)
Q Consensus 138 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~ 189 (804)
..++.....+...+..++....+.+.....++..|..++.+++.++..+...
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E 255 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE 255 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555555555555444
No 173
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.0025 Score=59.20 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=43.0
Q ss_pred CCcccccccccccCC----ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 747 KAILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
...+.|||-.-.|.. .++-.|||+|-..-++..- ...||.|+.+|...|+..|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEee
Confidence 345899998766654 5666999999999998873 4579999999999998765
No 174
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.0061 Score=67.73 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=31.0
Q ss_pred hHHhHhcCCCcccccccccccC--CceeccCCCcccHHHHHHHhh
Q 003678 739 LQDEIKDCKAILKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLE 781 (804)
Q Consensus 739 l~~e~~~~~~~l~C~iC~~~~~--~~v~~~C~H~fC~~Ci~~~~~ 781 (804)
+.....-++..-+|.+|+..+- .-++.||||.|-..|+-....
T Consensus 807 l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 807 LRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred hhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3333334445568999998874 356669999999999987654
No 175
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0079 Score=66.27 Aligned_cols=76 Identities=20% Similarity=0.443 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCCcccccccccccCCc-eeccCCCcccHHHHHH
Q 003678 700 RKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEV-VITKCFHLFCNPCIQR 778 (804)
Q Consensus 700 ~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~~-v~~~C~H~fC~~Ci~~ 778 (804)
...+++-+..++...+++..++..++.++.... .++ .-+|+.|.-...=| |...|||.|-..|+..
T Consensus 804 ~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~-----i~q--------~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~ 870 (933)
T KOG2114|consen 804 STIIEQDEDAIEVYKKDIEEKRQELETLRTSAQ-----IFQ--------VSKCSACEGTLDLPFVHFLCGHSYHQHCLED 870 (933)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccc-----eee--------eeeecccCCccccceeeeecccHHHHHhhcc
Confidence 334444445556666666666666666544331 111 14899998887765 5559999999999992
Q ss_pred HhhcCCCCccccCc
Q 003678 779 NLEIRHRKCPGCGT 792 (804)
Q Consensus 779 ~~~~~~~~CP~C~~ 792 (804)
...+||.|..
T Consensus 871 ----~~~~CP~C~~ 880 (933)
T KOG2114|consen 871 ----KEDKCPKCLP 880 (933)
T ss_pred ----CcccCCccch
Confidence 4568999986
No 176
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.34 E-value=0.0035 Score=43.70 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=33.0
Q ss_pred ccccccc--ccCCceeccCC-----CcccHHHHHHHhhcC-CCCccccC
Q 003678 751 KCGVCFD--RPKEVVITKCF-----HLFCNPCIQRNLEIR-HRKCPGCG 791 (804)
Q Consensus 751 ~C~iC~~--~~~~~v~~~C~-----H~fC~~Ci~~~~~~~-~~~CP~C~ 791 (804)
.|.||++ ...++.+.||. |.|=..|+..|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 44568888995 899999999999765 44699996
No 177
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=2.3 Score=46.83 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=7.6
Q ss_pred ceeccCCCcccHHH
Q 003678 762 VVITKCFHLFCNPC 775 (804)
Q Consensus 762 ~v~~~C~H~fC~~C 775 (804)
..++.||---=..|
T Consensus 650 ~ritS~ya~~~~~~ 663 (716)
T KOG4593|consen 650 YRLTSGYAEEPDDC 663 (716)
T ss_pred eeeeeeccCCCchh
Confidence 44556665554555
No 178
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.002 Score=50.61 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=26.0
Q ss_pred cCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 766 KCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.|.|.|-+.||.+|+++|++ ||.|....-
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 79999999999999998776 999987654
No 179
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.28 E-value=2.8 Score=47.35 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=8.5
Q ss_pred hHHHHhHHhHhcCCCc
Q 003678 734 AAIQKLQDEIKDCKAI 749 (804)
Q Consensus 734 ~~~~~l~~e~~~~~~~ 749 (804)
..+..++..+..+...
T Consensus 596 ~~~q~lq~al~~ld~P 611 (980)
T KOG0980|consen 596 SGIQALQNALYQLDSP 611 (980)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3455566655555443
No 180
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.24 E-value=2.9 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCCccccCcCCCCCCccccc
Q 003678 783 RHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 783 ~~~~CP~C~~~~~~~d~~~~~ 803 (804)
.++.-|+....|...|+++.+
T Consensus 1219 Phra~~~df~~f~t~d~kr~~ 1239 (1243)
T KOG0971|consen 1219 PHRAVPTDFATFPTSDFKRAK 1239 (1243)
T ss_pred CCccccCcccccccHHHHHHH
Confidence 456678888888888877653
No 181
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.24 E-value=1.7 Score=44.45 Aligned_cols=13 Identities=38% Similarity=0.294 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003678 710 RKKLEEELMEVNN 722 (804)
Q Consensus 710 ~~~le~el~~l~~ 722 (804)
+.+++.+...|+.
T Consensus 253 ~kklEKE~~~~k~ 265 (309)
T PF09728_consen 253 IKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 182
>PF13514 AAA_27: AAA domain
Probab=96.24 E-value=4.9 Score=49.76 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccCCCC--hhcHHHHHHHHHHHH
Q 003678 434 DKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRD--PRDLMEIKESERRAH 488 (804)
Q Consensus 434 ~~~~~~~~ei~~l~~~l~~l~~~~~el~~~l~~~~~~~~~--~~~~~~l~~~~~~~~ 488 (804)
.........+..+...+..+......+...+..+...... ...+...+......+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W 515 (1111)
T PF13514_consen 459 AEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAW 515 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 3334444445555555555555555555555544443322 244444444433333
No 183
>PHA03096 p28-like protein; Provisional
Probab=96.23 E-value=0.0019 Score=63.82 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=32.1
Q ss_pred ccccccccccCC--------ceeccCCCcccHHHHHHHhhcCCC--CccccCcC
Q 003678 750 LKCGVCFDRPKE--------VVITKCFHLFCNPCIQRNLEIRHR--KCPGCGTA 793 (804)
Q Consensus 750 l~C~iC~~~~~~--------~v~~~C~H~fC~~Ci~~~~~~~~~--~CP~C~~~ 793 (804)
-.|+||++.... .++..|.|.||..|+..|...+.. .||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 359999887643 455589999999999999876433 36666543
No 184
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0019 Score=66.31 Aligned_cols=43 Identities=26% Similarity=0.483 Sum_probs=35.4
Q ss_pred cCCceeccCCCcccHHHHHHHhhcCCCCccccCcC--CCCCCccc
Q 003678 759 PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTA--FGQSDVRF 801 (804)
Q Consensus 759 ~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~--~~~~d~~~ 801 (804)
-..|.+++|||+||..|+...+.+..-.||.||.+ +...++..
T Consensus 19 ~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~ 63 (296)
T KOG4185|consen 19 DHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKS 63 (296)
T ss_pred ccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhh
Confidence 34577888999999999999999888889999999 55555443
No 185
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.20 E-value=1.9 Score=44.72 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhhhHhHhhhhHhH
Q 003678 400 RWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCV 437 (804)
Q Consensus 400 ~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~~~~~~~ 437 (804)
+|+.+..+...+..-...+........|.+..+...+.
T Consensus 303 k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie 340 (622)
T COG5185 303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE 340 (622)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444444444433333333333333333343333333
No 186
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.17 E-value=0.0027 Score=61.64 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=37.3
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhc-CCCCccccCcC
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTA 793 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~-~~~~CP~C~~~ 793 (804)
...|-||....+-...+||||..|..|.-+.-.. ....||.|+..
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3689999999999999999999999998765433 34559999964
No 187
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0025 Score=60.17 Aligned_cols=41 Identities=32% Similarity=0.708 Sum_probs=35.2
Q ss_pred cccccccccCCceeccCCCcc-cHHHHHHHhhcCCCCccccCcCCCC
Q 003678 751 KCGVCFDRPKEVVITKCFHLF-CNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~f-C~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
.|-.|..+-..++++||.|+. |..|-.+ -+.||.|+.+...
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 399999999999999999987 9999885 3459999987665
No 188
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.16 E-value=0.0034 Score=43.91 Aligned_cols=44 Identities=32% Similarity=0.634 Sum_probs=24.0
Q ss_pred ccccccccccCCceec-cCCCcccHHH---HHHHhhcCCCCccccCcC
Q 003678 750 LKCGVCFDRPKEVVIT-KCFHLFCNPC---IQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-~C~H~fC~~C---i~~~~~~~~~~CP~C~~~ 793 (804)
+.||+.+.++.-|+.. .|.|.-|++= +.....++.-+||.|+.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999998877 8999998753 444444445579999875
No 189
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.10 E-value=3.5 Score=46.77 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003678 75 EEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQ 154 (804)
Q Consensus 75 ~~~l~~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e 154 (804)
++.+..++...+..++.+...+.+...+++.|...... +....+.+..+...|+..+..+...-..+-.+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~----------~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQE----------LRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666666666666666666655554442 33334444444455555444444443333444
Q ss_pred HHHHHhhhhhhHHHH
Q 003678 155 IENYISSHSVDQAEI 169 (804)
Q Consensus 155 ~~~~~~~~~~~~~e~ 169 (804)
+..++.+.-.++..+
T Consensus 99 yselEeENislQKqv 113 (717)
T PF09730_consen 99 YSELEEENISLQKQV 113 (717)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444433333333
No 190
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.01 E-value=2.7 Score=44.78 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 003678 387 LSKEMGMMEAQLNR 400 (804)
Q Consensus 387 l~~~~~~l~~~~~~ 400 (804)
+.+++..+...++.
T Consensus 169 lEk~Le~i~~~l~q 182 (570)
T COG4477 169 LEKKLENIEEELSQ 182 (570)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 191
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.94 E-value=2.1 Score=42.80 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 641 KACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNER 710 (804)
Q Consensus 641 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 710 (804)
..+...+.....+....+.++..+..++.+++.....+-.+-+.+...+...+..-..+..++.+++.++
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444433333333333333333333333333333333
No 192
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0019 Score=60.61 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=38.1
Q ss_pred ccccccccccCCc----------eeccCCCcccHHHHHHHhhcCC-CCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKEV----------VITKCFHLFCNPCIQRNLEIRH-RKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~~----------v~~~C~H~fC~~Ci~~~~~~~~-~~CP~C~~~~~~~d 798 (804)
.-|.||...+... ..+.|+|+|-..||..|--.+. .+||-|...+....
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 5799999888543 4669999999999999976432 35999998876443
No 193
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.93 E-value=0.0038 Score=68.95 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=36.3
Q ss_pred ccccccccccC-------CceeccCCCcccHHHHHHHhhcCCC-CccccCcCCC
Q 003678 750 LKCGVCFDRPK-------EVVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~-------~~v~~~C~H~fC~~Ci~~~~~~~~~-~CP~C~~~~~ 795 (804)
-.|+||..... +..+-.|.|.|-..|+-.|+.+..+ .||.||..|.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 47999965543 3344479999999999999998665 5999998775
No 194
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.90 E-value=0.0019 Score=49.09 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=24.0
Q ss_pred ccccccccccC-C-----ceec--cCCCcccHHHHHHHhhc----CC------CCccccCcCCCC
Q 003678 750 LKCGVCFDRPK-E-----VVIT--KCFHLFCNPCIQRNLEI----RH------RKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~-~-----~v~~--~C~H~fC~~Ci~~~~~~----~~------~~CP~C~~~~~~ 796 (804)
+.|+||+..+. + .+.. .|++.|=..|+..|+.. +. .+||.|+.++..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 67999987754 2 2222 79999999999999874 21 149999998764
No 195
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.89 E-value=0.011 Score=50.21 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=24.2
Q ss_pred cccccccccccCCceec--cCCCcccHHHHH
Q 003678 749 ILKCGVCFDRPKEVVIT--KCFHLFCNPCIQ 777 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~--~C~H~fC~~Ci~ 777 (804)
.-.|++|+.++.+.++. ||||+|...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 36799999999874444 999999999986
No 196
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.79 E-value=0.0019 Score=70.38 Aligned_cols=51 Identities=27% Similarity=0.725 Sum_probs=41.0
Q ss_pred hcCCCcccccccccccCCceeccCCCcccHHHHHHHhhcCC--CCccccCcCC
Q 003678 744 KDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAF 794 (804)
Q Consensus 744 ~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~--~~CP~C~~~~ 794 (804)
..+...+.||||...++.++.++|+|.||..|+...+..-. ..||.|+...
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred HHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 33444589999999999999999999999999998877422 2499998543
No 197
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.75 E-value=2.3 Score=41.80 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=15.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 593 KLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 627 (804)
Q Consensus 593 ~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~ 627 (804)
+.......+...+..+..+..-+..++..+.....
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444443
No 198
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.66 E-value=1.1 Score=43.30 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred ccHHHHHHHhhcCCCCccccCcCCCCC
Q 003678 771 FCNPCIQRNLEIRHRKCPGCGTAFGQS 797 (804)
Q Consensus 771 fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 797 (804)
-|.+|-+-... .-..||.|.+.-...
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhc-CCCCCcccccccccC
Confidence 49999997766 467899998765443
No 199
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0075 Score=54.89 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=38.6
Q ss_pred cccccccccccC--CceeccCCCcccHHHHHHHhhc-------CCCCccccCcCCC
Q 003678 749 ILKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEI-------RHRKCPGCGTAFG 795 (804)
Q Consensus 749 ~l~C~iC~~~~~--~~v~~~C~H~fC~~Ci~~~~~~-------~~~~CP~C~~~~~ 795 (804)
.-.|..|...+. +.+.+-|+|+|-..|+..|... ++..||.|...+-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 358999988874 6888899999999999999864 4556999987654
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.63 E-value=3.4 Score=42.99 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhHHH
Q 003678 89 MKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAE 168 (804)
Q Consensus 89 ~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~e 168 (804)
..-+...++++...++.|...+.+........+.+...-..++.+.+.+..-+..+..+-..+...+..+...+...+.+
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee 345 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE 345 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44555678888887777777777665444555677777788888888888888888888877777788887777777777
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 003678 169 IQHLAGELEETMAELEESR 187 (804)
Q Consensus 169 ~~~l~~~l~~l~~el~~~~ 187 (804)
+.-|+..++.+.+.+..-.
T Consensus 346 i~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 346 IKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHhhHHHHHHHHHhcC
Confidence 7777777777777665543
No 201
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.60 E-value=0.0094 Score=60.75 Aligned_cols=53 Identities=26% Similarity=0.637 Sum_probs=39.4
Q ss_pred ccccccccccCCceec-----------------cCC-----CcccHHHHHHHhhcCCC------------CccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVIT-----------------KCF-----HLFCNPCIQRNLEIRHR------------KCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-----------------~C~-----H~fC~~Ci~~~~~~~~~------------~CP~C~~~~~ 795 (804)
-.|--|+....++.+. +|+ =+.|.+|+-+|+..|+. .||+||++|-
T Consensus 272 e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 272 EPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4688888776664444 222 34488999999988763 3999999999
Q ss_pred CCCcccc
Q 003678 796 QSDVRFV 802 (804)
Q Consensus 796 ~~d~~~~ 802 (804)
..||..|
T Consensus 352 ilDV~~v 358 (358)
T PF10272_consen 352 ILDVCYV 358 (358)
T ss_pred eeeeecC
Confidence 9998754
No 202
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.60 E-value=0.006 Score=59.14 Aligned_cols=52 Identities=21% Similarity=0.600 Sum_probs=40.3
Q ss_pred cccccccccC--Ccee--ccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 751 KCGVCFDRPK--EVVI--TKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 751 ~C~iC~~~~~--~~v~--~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
.||.|++.+. +--+ .+||-..|.-|....-..-...||.||..+....|+.+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 4999998873 3333 47999889999887766556679999999998887654
No 203
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=2.6 Score=41.12 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAE 586 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~ 586 (804)
+..-+..+..+......+..++..|..++......+..+..+++..+..+..++..+..+...|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444433
No 204
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.0055 Score=60.85 Aligned_cols=37 Identities=30% Similarity=0.649 Sum_probs=29.3
Q ss_pred eccCCCcccHHHHHHHhhcC--CCCccccCcCCCCCCcc
Q 003678 764 ITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVR 800 (804)
Q Consensus 764 ~~~C~H~fC~~Ci~~~~~~~--~~~CP~C~~~~~~~d~~ 800 (804)
|..|||+|-..|+..|+++. .|.||.|+...+...|.
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 33599999999999999974 26899999766665544
No 205
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.49 E-value=0.0063 Score=40.34 Aligned_cols=42 Identities=31% Similarity=0.803 Sum_probs=25.3
Q ss_pred cccccccccCCceeccCC-CcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 751 KCGVCFDRPKEVVITKCF-HLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~-H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.|..|- |.+.-+.+|. |-.|..|+...+. +...||+|+.++-
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 466663 4445567888 5569999999888 6888999998764
No 206
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.44 E-value=0.0049 Score=61.07 Aligned_cols=44 Identities=34% Similarity=0.741 Sum_probs=35.7
Q ss_pred ccccccccccC--C--ceeccCCCcccHHHHHHHhhcC-CCCccccCcC
Q 003678 750 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIR-HRKCPGCGTA 793 (804)
Q Consensus 750 l~C~iC~~~~~--~--~v~~~C~H~fC~~Ci~~~~~~~-~~~CP~C~~~ 793 (804)
+.|..|++.+. + --.+||.|+|-..|+.+.+..+ .+.||.||+-
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 78999998874 3 4456999999999999988754 5679999943
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.44 E-value=3.4 Score=41.76 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003678 710 RKKLEEELMEVNNKVAEL 727 (804)
Q Consensus 710 ~~~le~el~~l~~~l~~l 727 (804)
+..++++..-++..+.++
T Consensus 205 l~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 205 LKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 208
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=2.9 Score=40.85 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHH
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDRE 555 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e 555 (804)
++.++..+...+..+..+++..+.++..+...++.++.+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333333333
No 209
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.39 E-value=7.1 Score=45.15 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 342 RIERLEVQLQKSIIEKNDLGLKMEEAI 368 (804)
Q Consensus 342 ~~~~l~~~l~~~~~e~~~l~~~le~~~ 368 (804)
+...++.++..+..+....+..+....
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 210
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0056 Score=61.37 Aligned_cols=42 Identities=29% Similarity=0.594 Sum_probs=33.4
Q ss_pred ceeccCCCcccHHHHHHHhhcCCC-CccccCcCCCCCCccccc
Q 003678 762 VVITKCFHLFCNPCIQRNLEIRHR-KCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~~~~-~CP~C~~~~~~~d~~~~~ 803 (804)
.|++.|||.|...||..|+..... .||.|...-...++++.|
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 567799999999999999952111 299999888888887766
No 211
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.16 E-value=1.6 Score=37.15 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 003678 562 EMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQ 603 (804)
Q Consensus 562 e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~ 603 (804)
++..+...+.+++.....+..-+.+..+.+..|..++..+..
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333
No 212
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.015 Score=54.02 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCceeccCCCcccHHHHHHHhh
Q 003678 746 CKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE 781 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~ 781 (804)
.+.--+|+.|..++.+||++|=||+||..||-.++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 333368999999999999999999999999998874
No 213
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.00 E-value=10 Score=44.84 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHH
Q 003678 144 IHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEES 186 (804)
Q Consensus 144 l~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~ 186 (804)
++..+......+...+.+...+.+.+..++.+++.++......
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 214
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.99 E-value=0.016 Score=55.47 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=36.3
Q ss_pred ccccccccccCC---ceeccCCCcccHHHHHHHhhc----------------------CCCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEI----------------------RHRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~----------------------~~~~CP~C~~~~~~ 796 (804)
..|.||.-.|-+ -+.|+|+|-|-+.|+.+++.. -..-||+|+.+++.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 689999888865 344599999999999988753 11239999998874
No 215
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.90 E-value=2.3 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 003678 709 ERKKLEEELMEVNNKVAELTS 729 (804)
Q Consensus 709 ~~~~le~el~~l~~~l~~l~~ 729 (804)
.+.+++.++..++..+++...
T Consensus 110 qie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554433
No 216
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.89 E-value=4.8 Score=40.46 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 662 ETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVA 725 (804)
Q Consensus 662 ~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~ 725 (804)
..+...+.+....+.+++..+....................+......+..+.+....+...|.
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444444444444444444454444444444443
No 217
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.86 E-value=0.06 Score=62.62 Aligned_cols=45 Identities=29% Similarity=0.586 Sum_probs=40.0
Q ss_pred ccccccccccC-CceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPK-EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~-~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|++|.+... -..+..|||.||..|+..|.. .+..||+|...++
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 58999999998 577789999999999999999 6888999987665
No 218
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.033 Score=40.56 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=35.6
Q ss_pred cccccccccc----CCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccc
Q 003678 750 LKCGVCFDRP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 801 (804)
Q Consensus 750 l~C~iC~~~~----~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~ 801 (804)
..|..|-..+ .+..|..=-|+||..|....+. ..||.||-.|....++|
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 4677785544 2344444558999999998765 47999999988877665
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.54 E-value=4.4 Score=38.49 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHhh
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQT---QNQHLLQQVAERDDLNIKLVSE 597 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~---~~~~l~~~~~~l~~~~~~l~~e 597 (804)
|..+..++..++.........+.++..+...+..-+..+..++..+...+..... .+..+...+..++..+..+.-+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444444444444444444444444333222 2233334444455555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003678 598 SVKTKQVQSFLLSEKQALAR 617 (804)
Q Consensus 598 ~~~~~~~~~~l~~e~~~l~~ 617 (804)
...+.+.+..+..+.+.+..
T Consensus 109 ~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544443
No 220
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.47 E-value=0.024 Score=54.68 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=48.8
Q ss_pred cCCCcccccccccccCC---ceeccCCCcccHHHHHHHhhcC--CCCccccCcCCCCCCcccccC
Q 003678 745 DCKAILKCGVCFDRPKE---VVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~---~v~~~C~H~fC~~Ci~~~~~~~--~~~CP~C~~~~~~~d~~~~~~ 804 (804)
.+...+.|||-.+.-.+ |+.+.|||+.-..-+.....++ ..+||-|-..-...++.++||
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 45667899997655543 9999999999999888887754 347999999999999999886
No 221
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.47 E-value=0.032 Score=41.72 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=22.4
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
..|.||.+...- +...-|+-..|.+|..--.+.+..-||.|+++|..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 479999887642 33347888889999998888777789999998863
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.46 E-value=3.9 Score=43.14 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVS 596 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 596 (804)
++.++..++.+...++.+..-++.+---.... ...-...+..++..+..++..++..+..+..++....+++.+|..
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~k---eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEK---EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544433211000000 011223445555556666666666666666666777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 597 ESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRH 656 (804)
Q Consensus 597 e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~ 656 (804)
++..+..++..+.-+++.+..-+......-+.+..+..+++.+-..+...+...+.+++.
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766666666665555555555555555555555555544443
No 223
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.37 E-value=10 Score=42.04 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003678 285 NLVNDQLQHWNVEVERYKALTDSLLID 311 (804)
Q Consensus 285 ~~l~~~l~~l~~el~~~~~~~~~l~~e 311 (804)
...+.-+..|+..++.+.-++..-.-+
T Consensus 302 ~K~q~LL~~WREKVFaLmVQLkaQele 328 (739)
T PF07111_consen 302 RKCQQLLSRWREKVFALMVQLKAQELE 328 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566777888888877666654333
No 224
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.018 Score=55.43 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=29.2
Q ss_pred cccccccccCC-ceeccCCCcccHHHHHHHhhcCCCCccccCcCC
Q 003678 751 KCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 751 ~C~iC~~~~~~-~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
.|--|...+.- -..++|.|+||..|-.... ...||.|.-++
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHH
Confidence 57777655543 4456999999999987542 44699997543
No 225
>PF13514 AAA_27: AAA domain
Probab=94.25 E-value=19 Score=44.66 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003678 339 SESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG 372 (804)
Q Consensus 339 ~~~~~~~l~~~l~~~~~e~~~l~~~le~~~~~~~ 372 (804)
....+..+...+..+......+...........|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g 595 (1111)
T PF13514_consen 562 ARARLARAQARLAAAEAALAALEAAWAALWAAAG 595 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444444455555555555555555544444444
No 226
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.15 E-value=8.2 Score=40.06 Aligned_cols=13 Identities=8% Similarity=0.427 Sum_probs=6.2
Q ss_pred hHHHHhHHhHhcC
Q 003678 734 AAIQKLQDEIKDC 746 (804)
Q Consensus 734 ~~~~~l~~e~~~~ 746 (804)
..+..++..++.+
T Consensus 276 ~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 276 SEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554444
No 227
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.10 E-value=5.7 Score=44.37 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Q 003678 442 EIKSLKALIEKLQKDKLESQIMLDMYG 468 (804)
Q Consensus 442 ei~~l~~~l~~l~~~~~el~~~l~~~~ 468 (804)
-...+..++..++..+......+..|+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555555444
No 228
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=93.97 E-value=0.05 Score=37.82 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=32.9
Q ss_pred ccccccccccCC--ceeccCC--CcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 750 LKCGVCFDRPKE--VVITKCF--HLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 750 l~C~iC~~~~~~--~v~~~C~--H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
..|..|...+-. +-...|. .+||..|....+. ..||.||-.|....+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRRPR 56 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccCCC
Confidence 468888766532 1233344 5899999999864 479999998876544
No 229
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.97 E-value=0.027 Score=46.35 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=26.9
Q ss_pred hHHHHhHHhHhcCCCcc-----cccccccccCCceeccCCCcccHHH
Q 003678 734 AAIQKLQDEIKDCKAIL-----KCGVCFDRPKEVVITKCFHLFCNPC 775 (804)
Q Consensus 734 ~~~~~l~~e~~~~~~~l-----~C~iC~~~~~~~v~~~C~H~fC~~C 775 (804)
.-+..||..+..-...+ .--||...-+.++...|||.||..-
T Consensus 37 kylavlqdrv~~~dpillpvg~hlfi~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 37 KYLAVLQDRVDWDDPILLPVGDHLFICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred HHHHHHHhhcccCCCeeeecCCcEEEEecccccEEEEeccccccChh
Confidence 34455565554433322 2335888888888889999999753
No 230
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.89 E-value=1 Score=42.66 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 003678 523 AAEAEIIE 530 (804)
Q Consensus 523 ~le~el~~ 530 (804)
.+..++..
T Consensus 78 ~l~~ELae 85 (194)
T PF08614_consen 78 KLQEELAE 85 (194)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 231
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.15 Score=52.45 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=35.9
Q ss_pred ccccccccccCC------ceecc--------CCCcccHHHHHHHhhcCCCCccccCcC
Q 003678 750 LKCGVCFDRPKE------VVITK--------CFHLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 750 l~C~iC~~~~~~------~v~~~--------C~H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
..|.+|...|.. |.+.. |||+.|..|+...+.....+||.|+.+
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 469999777762 45555 999999999999988777899999874
No 232
>PRK11281 hypothetical protein; Provisional
Probab=93.84 E-value=20 Score=43.51 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003678 480 IKESERRAHSQA 491 (804)
Q Consensus 480 l~~~~~~~~~e~ 491 (804)
++..+..+..++
T Consensus 85 L~k~l~~Ap~~l 96 (1113)
T PRK11281 85 LKQQLAQAPAKL 96 (1113)
T ss_pred HHHHHHHhHHHH
Confidence 333333333333
No 233
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.81 E-value=0.024 Score=48.15 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=27.7
Q ss_pred cccccccccccCC---ceeccCC------CcccHHHHHHHhh
Q 003678 749 ILKCGVCFDRPKE---VVITKCF------HLFCNPCIQRNLE 781 (804)
Q Consensus 749 ~l~C~iC~~~~~~---~v~~~C~------H~fC~~Ci~~~~~ 781 (804)
...|.||.+...+ +|.++|| |+||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4789999988866 7777888 8899999999943
No 234
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.79 E-value=6.8 Score=37.81 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 696 TEDMRKELENERNERKKLEEELMEVNN 722 (804)
Q Consensus 696 ~~~~~~~l~~~~~~~~~le~el~~l~~ 722 (804)
+.++...+...-...++++.++..+..
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 344444444444455666666666653
No 235
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.72 E-value=17 Score=42.11 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.9
Q ss_pred cCcCCCCCC
Q 003678 790 CGTAFGQSD 798 (804)
Q Consensus 790 C~~~~~~~d 798 (804)
.-.||+.-|
T Consensus 580 iD~p~~~lD 588 (650)
T TIGR03185 580 IDTPLGRLD 588 (650)
T ss_pred EcCCccccC
Confidence 567777665
No 236
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=93.70 E-value=0.011 Score=33.45 Aligned_cols=23 Identities=30% Similarity=0.866 Sum_probs=15.3
Q ss_pred ccHHHHHHHhhcCCCCccccCcCC
Q 003678 771 FCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 771 fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
||..|-..... ..+.||.||.+|
T Consensus 1 ~Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCC-cCcchhhhCCcC
Confidence 45566655544 567788888765
No 237
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.68 E-value=17 Score=42.05 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003678 610 SEKQALARQLQQINALVESA 629 (804)
Q Consensus 610 ~e~~~l~~~l~~~~~~~~~~ 629 (804)
.+++.+..++..+...++.+
T Consensus 639 ~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333
No 238
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.64 E-value=13 Score=40.52 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhHhhH
Q 003678 526 AEIIELVAKLDASERDV 542 (804)
Q Consensus 526 ~el~~l~~~l~~~~~~~ 542 (804)
.++..++.++..+...+
T Consensus 81 ~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 81 ADAAELESQVLRLEAEV 97 (423)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 239
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.61 E-value=1.1 Score=42.58 Aligned_cols=6 Identities=83% Similarity=1.149 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003678 711 KKLEEE 716 (804)
Q Consensus 711 ~~le~e 716 (804)
.+++.+
T Consensus 168 ~~l~~E 173 (194)
T PF08614_consen 168 RKLEEE 173 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 240
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.60 E-value=13 Score=40.47 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003678 706 ERNERKKLEEELMEVNNKVAEL 727 (804)
Q Consensus 706 ~~~~~~~le~el~~l~~~l~~l 727 (804)
....+..++..+..+...+...
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444445555444443
No 241
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.37 E-value=6 Score=37.46 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003678 526 AEIIELVAKLD 536 (804)
Q Consensus 526 ~el~~l~~~l~ 536 (804)
.++..++..+.
T Consensus 95 ~el~~l~~~~~ 105 (191)
T PF04156_consen 95 EELDQLQERIQ 105 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 242
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.29 E-value=12 Score=39.17 Aligned_cols=121 Identities=13% Similarity=0.222 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003678 232 ELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLID 311 (804)
Q Consensus 232 ~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~~~~~~~~~l~~~l~~l~~el~~~~~~~~~l~~e 311 (804)
++...|..++..-..-...|..|+-.+.-|...+.+|+.+.... ..+-+-+..|+..++++....-.+.-+
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQ---------qvfvDiinkLk~niEeLIedKY~viLE 384 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQ---------QVFVDIINKLKENIEELIEDKYRVILE 384 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHHHHHHhHhHhhhh
Confidence 34455555555555556677888888888888888888765543 223333344444444444433333333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 312 RSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKM 364 (804)
Q Consensus 312 ~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~l 364 (804)
...+...++.+..-+.......+. ...+-..|+-++..+...|-.|+.++
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqE---sr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQE---SRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333333332222221111121 33344445555555555555555543
No 243
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.26 E-value=16 Score=40.59 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.4
Q ss_pred ccccCcCCC
Q 003678 787 CPGCGTAFG 795 (804)
Q Consensus 787 CP~C~~~~~ 795 (804)
|+..+..|.
T Consensus 722 ~~~~~~~~~ 730 (739)
T PF07111_consen 722 CQGDNQDSC 730 (739)
T ss_pred ccccCcCCC
Confidence 555544443
No 244
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.068 Score=58.06 Aligned_cols=55 Identities=31% Similarity=0.738 Sum_probs=42.1
Q ss_pred CCcccccccccccCC-ceeccCCCcccHHHHHHHhhcC-----C--CCccc--cCcCCCCCCccc
Q 003678 747 KAILKCGVCFDRPKE-VVITKCFHLFCNPCIQRNLEIR-----H--RKCPG--CGTAFGQSDVRF 801 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~-~v~~~C~H~fC~~Ci~~~~~~~-----~--~~CP~--C~~~~~~~d~~~ 801 (804)
.....|.||...+.. .++..|||.||..|...++.++ . -+||. |....+..+|..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~ 132 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEK 132 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeee
Confidence 344799999999986 7777999999999999988762 1 24654 887777766543
No 245
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.84 E-value=11 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 003678 443 IKSLKALIEKLQKDKLESQIMLDM 466 (804)
Q Consensus 443 i~~l~~~l~~l~~~~~el~~~l~~ 466 (804)
+..|.+++..+......|+..++.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445555666666655555555543
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.83 E-value=19 Score=42.59 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 003678 522 SAAEAEIIEL 531 (804)
Q Consensus 522 ~~le~el~~l 531 (804)
...+.++..+
T Consensus 211 ~~aE~~l~~f 220 (754)
T TIGR01005 211 RDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 247
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.75 E-value=20 Score=40.11 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003678 521 LSAAEAEIIEL 531 (804)
Q Consensus 521 l~~le~el~~l 531 (804)
+...+..+..+
T Consensus 177 L~~ae~~l~~f 187 (498)
T TIGR03007 177 LEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 248
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.70 E-value=0.045 Score=59.59 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.0
Q ss_pred ccccccccccCC----ceecc---CCCcccHHHHHHHhhc-----CCCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKE----VVITK---CFHLFCNPCIQRNLEI-----RHRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~----~v~~~---C~H~fC~~Ci~~~~~~-----~~~~CP~C~~~~~~ 796 (804)
-.|++|...|.+ .-+.+ |+|-||..||.+|... ..-.||+|..+|+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 466666555554 33344 9999999999999863 12238999988873
No 249
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.53 E-value=18 Score=42.79 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHH
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELE 546 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~ 546 (804)
..-+..++..++.++...+..+....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444443
No 250
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=17 Score=38.89 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 340 ESRIERLEVQLQKSIIEKNDLGLKMEE 366 (804)
Q Consensus 340 ~~~~~~l~~~l~~~~~e~~~l~~~le~ 366 (804)
+.++.+.-..+..-+.....++.++..
T Consensus 228 ekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 228 EKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555555555555566666666665
No 251
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.43 E-value=26 Score=40.81 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003678 141 MEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRRK 189 (804)
Q Consensus 141 ~~~l~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~~ 189 (804)
+-..+.++.++......+.+.+......+..|+..++.+..+++..+..
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666666666666677777777777777776666644
No 252
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.046 Score=52.12 Aligned_cols=37 Identities=32% Similarity=0.737 Sum_probs=29.8
Q ss_pred cCCCcccHHHHHHHhhcCC------------CCccccCcCCCCCCcccc
Q 003678 766 KCFHLFCNPCIQRNLEIRH------------RKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~~~------------~~CP~C~~~~~~~d~~~~ 802 (804)
-|.-+.|.+|+-.|+-.|+ -.||+||+.|-..||+.|
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 4666778999999886543 359999999999999865
No 253
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.055 Score=56.91 Aligned_cols=50 Identities=30% Similarity=0.848 Sum_probs=34.6
Q ss_pred cccccccccccCC----ceeccCCCcccHHHHHHHhhcC-----CCCccc--cCcCCCCCC
Q 003678 749 ILKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIR-----HRKCPG--CGTAFGQSD 798 (804)
Q Consensus 749 ~l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~-----~~~CP~--C~~~~~~~d 798 (804)
...|+||+..... .....|||.||..|+..+++.+ ...||. |...+...+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 3589999844332 2245899999999999999864 224765 666665544
No 254
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=92.12 E-value=0.032 Score=32.89 Aligned_cols=24 Identities=29% Similarity=0.939 Sum_probs=15.6
Q ss_pred cccHHHHHHHhhcCCCCccccCcCC
Q 003678 770 LFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 770 ~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
+||..|-.. +....+.||.||.++
T Consensus 3 ~~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCc-CCcccccChhhCCCC
Confidence 456666663 344677888888764
No 255
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.92 E-value=3.8 Score=42.08 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003678 659 VNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSET 731 (804)
Q Consensus 659 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~ 731 (804)
.++..++....++..++..+..+...+..+-...-...+....++.........+...+......+.+|+..+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333334444444444444444444444444444455555555555555566666666666666666544
No 256
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.89 E-value=15 Score=36.82 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHH
Q 003678 664 TKWELADAEKELKWLKSAVTSSDKEY 689 (804)
Q Consensus 664 ~~~~~~~l~~~~~~l~~~l~~~~~~l 689 (804)
....+..+..++..++..+...+.+.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555444444433
No 257
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=91.89 E-value=0.04 Score=55.29 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=31.9
Q ss_pred ccccccccccCCceec----cCC--CcccHHHHHHHhhcCCCCccccCcC
Q 003678 750 LKCGVCFDRPKEVVIT----KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~----~C~--H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
..||||+....-.++. .=| |.+|.-|-..|-- ...+||.||..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 5899999887654433 234 6669999999866 45579999974
No 258
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.83 E-value=12 Score=35.59 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003678 619 LQQINALVESAKLRILHAEE 638 (804)
Q Consensus 619 l~~~~~~~~~~~~~~~~le~ 638 (804)
+..+.-..+.+...+..++.
T Consensus 102 l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 259
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=21 Score=38.31 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 668 LADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVN 721 (804)
Q Consensus 668 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~ 721 (804)
+.++-..+...++.++.....+...++.+.+....+..+....++.-.++-.++
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMK 569 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555566667777777777777777777777777666555444443333
No 260
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.25 E-value=18 Score=36.38 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003678 522 SAAEAEIIELVAK 534 (804)
Q Consensus 522 ~~le~el~~l~~~ 534 (804)
..+..++..+..+
T Consensus 55 ~~L~~d~~~L~~k 67 (264)
T PF06008_consen 55 ESLEQDVENLQEK 67 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 261
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.22 E-value=0.13 Score=59.97 Aligned_cols=46 Identities=30% Similarity=0.655 Sum_probs=34.1
Q ss_pred ccccccccc-cCC--ceeccCCCcccHHHHHHHhhcCCC---------CccccCcCCC
Q 003678 750 LKCGVCFDR-PKE--VVITKCFHLFCNPCIQRNLEIRHR---------KCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~-~~~--~v~~~C~H~fC~~Ci~~~~~~~~~---------~CP~C~~~~~ 795 (804)
-.|-||+.. +.. .+-+.|||+|-+.|+...+++||. .||.|..++-
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 357777533 222 455699999999999999998764 4999988764
No 262
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.98 Score=45.56 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=37.4
Q ss_pred cccccccccCC----ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 751 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 751 ~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
.|.||+..++. -.-..|||.+-..|+..|+.+ .++||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 59999888875 344589999999999999997 7889999876543
No 263
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=91.17 E-value=0.15 Score=49.46 Aligned_cols=47 Identities=9% Similarity=-0.125 Sum_probs=37.8
Q ss_pred cCCCcccccccccccCCceeccCCC-cccHHHHHHHhhcCCCCccccCcCC
Q 003678 745 DCKAILKCGVCFDRPKEVVITKCFH-LFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~~v~~~C~H-~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
.+-.-++|.+|....-..+..+||| +||..|-.-. -...||+|....
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccc
Confidence 3444579999999999999999997 6799999843 456899998654
No 264
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=91.11 E-value=0.18 Score=35.04 Aligned_cols=39 Identities=31% Similarity=0.569 Sum_probs=22.5
Q ss_pred ccccccccCCc-------ee---ccCCCcccHHHHHHHhhcCCCCccccC
Q 003678 752 CGVCFDRPKEV-------VI---TKCFHLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 752 C~iC~~~~~~~-------v~---~~C~H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
|--|...|..+ .. -.|++.||.+|---.-+ .-..||.|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE-~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHE-TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTT-TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhc-cccCCcCCC
Confidence 56677777664 11 27999999999765444 355699995
No 265
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.09 E-value=5.1 Score=41.15 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=3.2
Q ss_pred CCCcccHHH
Q 003678 767 CFHLFCNPC 775 (804)
Q Consensus 767 C~H~fC~~C 775 (804)
|-.-||..|
T Consensus 248 ~~~q~~~~~ 256 (314)
T PF04111_consen 248 CLQQLAEFV 256 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 266
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.92 E-value=40 Score=39.90 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhH
Q 003678 441 AEIKSLKALIEKLQKDK 457 (804)
Q Consensus 441 ~ei~~l~~~l~~l~~~~ 457 (804)
.-+..+-.+|++|+.++
T Consensus 404 ~llKd~~~EIerLK~dl 420 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDL 420 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666543
No 267
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.77 E-value=38 Score=39.34 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 383 MASALSKEMGMMEAQLNRWKETADEALSLREKA 415 (804)
Q Consensus 383 ~~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~~ 415 (804)
+...|-+....|+.-..-|-.....+..+..++
T Consensus 277 Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 277 LKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443344556666666666666
No 268
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.61 E-value=20 Score=37.51 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003678 687 KEYEQIQRKTEDM 699 (804)
Q Consensus 687 ~~l~~~~~~~~~~ 699 (804)
.++.+++.++.++
T Consensus 435 ~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 435 EKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHhH
Confidence 3344444444333
No 269
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.60 E-value=0.3 Score=32.93 Aligned_cols=39 Identities=23% Similarity=0.621 Sum_probs=22.8
Q ss_pred ccccccccCCceecc---CCCcccHHHHHHHhhcCCC-Ccccc
Q 003678 752 CGVCFDRPKEVVITK---CFHLFCNPCIQRNLEIRHR-KCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~~v~~~---C~H~fC~~Ci~~~~~~~~~-~CP~C 790 (804)
|.+|.+....-+.-+ |+=.+=..|+..++..+.. +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777666544443 8878888999999997665 49998
No 270
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=90.51 E-value=0.087 Score=44.38 Aligned_cols=41 Identities=29% Similarity=0.534 Sum_probs=29.1
Q ss_pred CCCcccccccccccCCceeccCCCcc--cHHHHHHHhhcCCCCccccCcC
Q 003678 746 CKAILKCGVCFDRPKEVVITKCFHLF--CNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~~v~~~C~H~f--C~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
+..++.|..-.-.+...+...|||.. +++| ++|.||.|+..
T Consensus 27 ~~~il~Crt~~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~ 69 (111)
T PF14319_consen 27 VEAILACRTEALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAK 69 (111)
T ss_pred HHHHHhcCCccCCcceeecCCCCceEEecCcc-------cCcCCCCCCCh
Confidence 33446787777777777777888766 7777 45679999865
No 271
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=90.49 E-value=0.024 Score=42.00 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=22.5
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
+.||.|...+.-.- ||.+|..|-.... ....||.|+.+..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECccccccce--ecccCCCcccHHH
Confidence 67999987753322 8899999988542 2456999998763
No 272
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.45 E-value=30 Score=37.76 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003678 515 AACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKL 594 (804)
Q Consensus 515 ~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l 594 (804)
..++.++..++..-+.|.-++.-+..++..-.+. +..|..=|+.....+....+.++.-.-....|+.+.-.|
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEK-------IrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEK-------IRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhh-------HHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHH
Confidence 3566677777666666665555555444444433 333333333333333333333333333334555555556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 595 VSESVKTKQVQSFLLSEKQALARQLQQIN 623 (804)
Q Consensus 595 ~~e~~~~~~~~~~l~~e~~~l~~~l~~~~ 623 (804)
+.+...+.=.+..+.++....+..+...+
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se 208 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSE 208 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHH
Confidence 65555555555555555544444444333
No 273
>PRK04023 DNA polymerase II large subunit; Validated
Probab=90.27 E-value=0.16 Score=57.88 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=34.7
Q ss_pred ccccccccccCCceeccCCC-----cccHHHHHHHhhcCCCCccccCcCCCCCCcc
Q 003678 750 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 800 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H-----~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~ 800 (804)
..||-|+.......+-.||. .||..|-... ....||.|+.........
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYSKR 679 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccceE
Confidence 58999998865555556995 5999995543 235699999888766543
No 274
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.09 E-value=0.13 Score=49.46 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=31.4
Q ss_pred CCcccccccccccCCceec-cCCCc------ccHHH--HHHHhhcCCCCccccCcCCCCCCcccc
Q 003678 747 KAILKCGVCFDRPKEVVIT-KCFHL------FCNPC--IQRNLEIRHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~~v~~-~C~H~------fC~~C--i~~~~~~~~~~CP~C~~~~~~~d~~~~ 802 (804)
.....||+|...|+...+. .=+.+ ||..= +.+.+- .-..||.||=+|..+|+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~l 66 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEKL 66 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCcccccccccC
Confidence 4568999999999763322 22222 22110 111111 12249999999998886643
No 275
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.00 E-value=17 Score=37.99 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=6.0
Q ss_pred HHHHhHHhHhcC
Q 003678 735 AIQKLQDEIKDC 746 (804)
Q Consensus 735 ~~~~l~~e~~~~ 746 (804)
++.+|+.+|..+
T Consensus 336 Al~kLk~EI~qM 347 (359)
T PF10498_consen 336 ALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHh
Confidence 445555555444
No 276
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=89.99 E-value=0.16 Score=40.19 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=17.4
Q ss_pred eeccCCCcccHHHHHHHhhcCCCCccccCcC
Q 003678 763 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 763 v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
..|+|||+|=.. -...+. =||.||..
T Consensus 4 ~CtrCG~vf~~g-~~~il~----GCp~CG~n 29 (112)
T COG3364 4 QCTRCGEVFDDG-SEEILS----GCPKCGCN 29 (112)
T ss_pred eecccccccccc-cHHHHc----cCccccch
Confidence 458999999765 222222 39999964
No 277
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.93 E-value=55 Score=39.91 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003678 577 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQL 619 (804)
Q Consensus 577 ~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l 619 (804)
+..+...+......+..+..+.....+.+..+......++.++
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555444444444444444444444443
No 278
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.92 E-value=17 Score=34.02 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEE 547 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~ 547 (804)
|..+...+.+.+.++..--.+|-.|..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ 38 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRA 38 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444433333333333
No 279
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=89.78 E-value=0.17 Score=29.66 Aligned_cols=12 Identities=42% Similarity=1.065 Sum_probs=7.5
Q ss_pred CCCccccCcCCC
Q 003678 784 HRKCPGCGTAFG 795 (804)
Q Consensus 784 ~~~CP~C~~~~~ 795 (804)
.+.||.||-.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 455777766664
No 280
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.74 E-value=5.3 Score=30.77 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 583 QVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRI 633 (804)
Q Consensus 583 ~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~ 633 (804)
.+.+.++.|..|+.+...+......+...+..++..+......+..+...+
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444444433333333333333
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.51 E-value=4.8 Score=37.30 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003678 659 VNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSE 730 (804)
Q Consensus 659 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~ 730 (804)
..++.++.++.++..+...+...+..++.++...+..+..+..+...+....+++..++..++.++..|...
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 344444444455555555555555555555555555565565555555556666666666666666666554
No 282
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.49 E-value=23 Score=34.95 Aligned_cols=43 Identities=35% Similarity=0.451 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHH
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAY 559 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l 559 (804)
+..++..++.+....+..+......+..|...+.....+...|
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333333333
No 283
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=89.45 E-value=0.37 Score=41.33 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=28.6
Q ss_pred ccccccccccC-----CceeccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 750 LKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 750 l~C~iC~~~~~-----~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
-.|.+|...|+ ..+...|+|.+|..|--.......-.|.+|..
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 58999988764 35666899999999987632222334888853
No 284
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=89.34 E-value=0.21 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.592 Sum_probs=27.1
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
-.|.+|..... .=||.||..|-- ....|++||..+.
T Consensus 45 ~~C~~CK~~v~-----q~g~~YCq~CAY-----kkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVH-----QPGAKYCQTCAY-----KKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccc-----cCCCccChhhhc-----ccCcccccCCeec
Confidence 47888865433 348999999966 4557999999873
No 285
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.31 E-value=19 Score=33.61 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 003678 570 FEDMQTQNQHLLQQVAERDDLNIKL 594 (804)
Q Consensus 570 ~~~l~~~~~~l~~~~~~l~~~~~~l 594 (804)
|+.++-.+..+...|.+...++.++
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~L 68 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKL 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 286
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.02 E-value=19 Score=33.47 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 558 AYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 627 (804)
Q Consensus 558 ~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~ 627 (804)
.+...|+.-...+..++.........+....+.+..+..+...+...+......+..+...+........
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333444444444433333333333333334333333333333
No 287
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=88.98 E-value=8.3 Score=37.13 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=36.3
Q ss_pred cccccccccccCCceec-cCCCcccHHHHHHHhhc-CCCCccccCcC
Q 003678 749 ILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI-RHRKCPGCGTA 793 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~-~~~~CP~C~~~ 793 (804)
.++||+-...+.+|++. +|||+|=..=|...+.. +...||+=|..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 47999999999998887 89999999989888763 25569985544
No 288
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.94 E-value=22 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003678 669 ADAEKELKWLKSAVTSSDKEYEQIQRKTEDMR 700 (804)
Q Consensus 669 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 700 (804)
.++..-+.+|...++.++..+--+++.+.+..
T Consensus 260 ~eL~dfm~eLdedVEgmqsTiliLQq~Lketr 291 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQSTILILQQKLKETR 291 (330)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 33333333344444444444444444433333
No 289
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.87 E-value=0.21 Score=55.63 Aligned_cols=45 Identities=29% Similarity=0.745 Sum_probs=34.9
Q ss_pred ccccccccccCCc--e--eccCCCcccHHHHHHHhhcC------CCCccccCcCC
Q 003678 750 LKCGVCFDRPKEV--V--ITKCFHLFCNPCIQRNLEIR------HRKCPGCGTAF 794 (804)
Q Consensus 750 l~C~iC~~~~~~~--v--~~~C~H~fC~~Ci~~~~~~~------~~~CP~C~~~~ 794 (804)
+.|.||.+.++.. + ...|||+|=..||.+|...+ .-.||.|....
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 7899999998752 2 23799999999999998752 22499998443
No 290
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.83 E-value=21 Score=33.50 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIK 593 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 593 (804)
|-.+...+..++..+......+..+...+.....+++....++........-++..+..+..++..+...+..
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 4444444555555555555555555555555555555555555555544444444444444444444444443
No 291
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.77 E-value=79 Score=40.16 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=12.0
Q ss_pred HHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003678 156 ENYISSHSVDQAEIQHLAGELEETMAELEESRR 188 (804)
Q Consensus 156 ~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~ 188 (804)
..+...+...+.++..++..+..+..++..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ 318 (1353)
T TIGR02680 286 GRARDELETAREEERELDARTEALEREADALRT 318 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 292
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=88.73 E-value=0.13 Score=37.43 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.6
Q ss_pred ccccccccccCC----ceeccCCCcccHHHHHHHhhc
Q 003678 750 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEI 782 (804)
Q Consensus 750 l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~ 782 (804)
..|++|...|.- .....||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 469999888754 344489999999999877653
No 293
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=88.70 E-value=0.028 Score=42.97 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=17.8
Q ss_pred ccccccccccCC----ceeccCCCcccHHHHHHHhh
Q 003678 750 LKCGVCFDRPKE----VVITKCFHLFCNPCIQRNLE 781 (804)
Q Consensus 750 l~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~ 781 (804)
..|.+|...|.- ..--.||++||..|......
T Consensus 10 ~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 10 SNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 589999999943 22337999999999986654
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.57 E-value=0.27 Score=53.72 Aligned_cols=42 Identities=21% Similarity=0.596 Sum_probs=33.1
Q ss_pred ccccccccccCC--ceeccCCCcccHHHHHHHhhcCCCCccc-cCc
Q 003678 750 LKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPG-CGT 792 (804)
Q Consensus 750 l~C~iC~~~~~~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP~-C~~ 792 (804)
+.|.+|+-...- -++..|||+.-.+|...|+.+ +..||. ||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCCCCCc
Confidence 678888777654 344489999999999999997 558996 554
No 295
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.50 E-value=41 Score=37.52 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 700 RKELENERNERKKLEEELMEVNNKVAEL 727 (804)
Q Consensus 700 ~~~l~~~~~~~~~le~el~~l~~~l~~l 727 (804)
...+...+....++..+++.+...+..|
T Consensus 229 kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 229 KKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333333344444444444433333
No 296
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=88.06 E-value=0.14 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred cccccccccCCceec--cCCCcc
Q 003678 751 KCGVCFDRPKEVVIT--KCFHLF 771 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~--~C~H~f 771 (804)
.||-|...+...... .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 588998777553333 499988
No 297
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=42 Score=36.10 Aligned_cols=42 Identities=38% Similarity=0.525 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 230 LQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNE 271 (804)
Q Consensus 230 ~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~ 271 (804)
-..+..++.+.+-.-..+..+...|..++..|++.+..|+..
T Consensus 151 R~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 151 RRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 456777888888888888888888888888888888777654
No 298
>PRK11281 hypothetical protein; Provisional
Probab=87.85 E-value=76 Score=38.87 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 339 SESRIERLEVQLQKSIIEKNDLGLKMEEA 367 (804)
Q Consensus 339 ~~~~~~~l~~~l~~~~~e~~~l~~~le~~ 367 (804)
...+.+.+++.+...-.+......+++..
T Consensus 78 ~~~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 78 QKEETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34566666666666666666655555543
No 299
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.68 E-value=0.15 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=19.3
Q ss_pred cCCceeccCCCcccHHHHHHHhh
Q 003678 759 PKEVVITKCFHLFCNPCIQRNLE 781 (804)
Q Consensus 759 ~~~~v~~~C~H~fC~~Ci~~~~~ 781 (804)
-..-.+|.|+|+||..|......
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc
Confidence 66668999999999999997643
No 300
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=87.63 E-value=0.11 Score=42.32 Aligned_cols=14 Identities=43% Similarity=0.785 Sum_probs=10.7
Q ss_pred ceeccCCCcccHHH
Q 003678 762 VVITKCFHLFCNPC 775 (804)
Q Consensus 762 ~v~~~C~H~fC~~C 775 (804)
.|-..|||.||.-=
T Consensus 24 ~vkc~CGh~f~d~r 37 (112)
T PF08882_consen 24 VVKCDCGHEFCDAR 37 (112)
T ss_pred eeeccCCCeecChh
Confidence 55558999999754
No 301
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=87.45 E-value=0.11 Score=52.81 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=23.2
Q ss_pred ccccccccccCCceecc-----CCCcccHHHHHHHhhcCCCCccccCcCC
Q 003678 750 LKCGVCFDRPKEVVITK-----CFHLFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~-----C~H~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
..||||+....-.++.. -.|.+|.-|-..|--. ..+||.||..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCC
Confidence 68999998876655553 2477799999999664 44699999753
No 302
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.43 E-value=42 Score=35.42 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003678 569 AFEDMQTQN 577 (804)
Q Consensus 569 ~~~~l~~~~ 577 (804)
.+...+..+
T Consensus 398 ~la~tqk~L 406 (527)
T PF15066_consen 398 ALANTQKHL 406 (527)
T ss_pred HHHHHHHHH
Confidence 333333333
No 303
>PF14353 CpXC: CpXC protein
Probab=87.42 E-value=0.49 Score=41.42 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=28.5
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcC--CCCccccCcCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIR--HRKCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~--~~~CP~C~~~~~~ 796 (804)
++||.|+..|.-.+-+.-.=..=..=....+... ...||.||..|..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 6899998888765555443333333333333211 2359999999875
No 304
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.40 E-value=49 Score=36.24 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 003678 522 SAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKT 601 (804)
Q Consensus 522 ~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~ 601 (804)
..+.-++.-|..++......|.+|+.-|......+.+-.+-+..---....+..+.-++..++.+|.-.+..+..+....
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNET 200 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhH
Confidence 33333344444444444444444444333333333222222222111123444444555555555555555555544444
Q ss_pred HHHHHH
Q 003678 602 KQVQSF 607 (804)
Q Consensus 602 ~~~~~~ 607 (804)
+.++..
T Consensus 201 E~K~R~ 206 (861)
T KOG1899|consen 201 EKKLRL 206 (861)
T ss_pred HHHHHh
Confidence 444433
No 305
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=87.36 E-value=0.19 Score=50.50 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=32.1
Q ss_pred cccccccccccCCceec---cCC--CcccHHHHHHHhhcCCCCccccCcC
Q 003678 749 ILKCGVCFDRPKEVVIT---KCF--HLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~---~C~--H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
...||||+....-.++. .=| |.+|.-|-..|.- +..+||.||..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 46899999887654432 344 5569999999866 35569999963
No 306
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.06 E-value=18 Score=33.79 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003678 554 REAEAYIAEMETIGQAFEDMQTQNQHLLQQVAER 587 (804)
Q Consensus 554 ~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l 587 (804)
.+...|..++..++..++..+..+..+..+...+
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333
No 307
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.88 E-value=61 Score=36.77 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 003678 517 CQQRLSAAEAEIIELVAKLDASERDVMEL 545 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~~~~~~~~~l 545 (804)
+..++..+.........+++.++.++.++
T Consensus 173 ~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 173 ARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 308
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.55 E-value=31 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 566 IGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALV 626 (804)
Q Consensus 566 l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~ 626 (804)
..+.+..++..+.....--.+++. .|..++..+......+..+...+..++...+...
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444433333332 2233344444444445555555544444443333
No 309
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=86.55 E-value=52 Score=35.61 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003678 167 AEIQHLAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 167 ~e~~~l~~~l~~l~~el~~~~~~~~~l 193 (804)
..+...+..+.-...+++.+...+..+
T Consensus 104 ~~i~~ie~~l~~iE~~i~~il~~l~~L 130 (570)
T COG4477 104 HEIDDIEQQLTLIEEDIEQILEDLNEL 130 (570)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 310
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.45 E-value=0.39 Score=41.91 Aligned_cols=28 Identities=25% Similarity=0.640 Sum_probs=23.5
Q ss_pred CCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 768 FHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 768 ~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
.|-||..|-...+.. ||.|+.++.....
T Consensus 27 ~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 27 REKFCSKCGAKTITS----CPNCSTPIRGDYH 54 (158)
T ss_pred HHHHHHHhhHHHHHH----CcCCCCCCCCcee
Confidence 467999999998774 9999999987653
No 311
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=86.16 E-value=0.22 Score=50.50 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=0.0
Q ss_pred ceeccCCCcccHHHHHHHhhcC--------CCCccccCcCCCCC
Q 003678 762 VVITKCFHLFCNPCIQRNLEIR--------HRKCPGCGTAFGQS 797 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~~--------~~~CP~C~~~~~~~ 797 (804)
.++.||||+.-..+..-|.... +.-||+|..++...
T Consensus 360 haF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 360 HAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp --------------------------------------------
T ss_pred eeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 5566999999888888887752 23599999998743
No 312
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.15 E-value=43 Score=34.33 Aligned_cols=10 Identities=10% Similarity=-0.008 Sum_probs=5.0
Q ss_pred cccccccccc
Q 003678 750 LKCGVCFDRP 759 (804)
Q Consensus 750 l~C~iC~~~~ 759 (804)
..++||+-.+
T Consensus 174 ~~~~I~~~~l 183 (302)
T PF10186_consen 174 SEYTICGLPL 183 (302)
T ss_pred CCeeecCccc
Confidence 3455664443
No 313
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.09 E-value=37 Score=33.49 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003678 710 RKKLEEELMEVNNKVAE 726 (804)
Q Consensus 710 ~~~le~el~~l~~~l~~ 726 (804)
+..++..+..+...+..
T Consensus 194 ~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 194 IQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 314
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.73 E-value=0.33 Score=47.61 Aligned_cols=42 Identities=21% Similarity=0.578 Sum_probs=35.6
Q ss_pred ccccccccc----cCCceeccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 750 LKCGVCFDR----PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 750 l~C~iC~~~----~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
..||+|..- +..+...+|||.-=..|+....-.+ -.||.|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 459999654 4568888999999999999999877 88999988
No 315
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.70 E-value=14 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 556 AEAYIAEMETIGQAFEDMQTQNQHL 580 (804)
Q Consensus 556 ~~~l~~e~~~l~~~~~~l~~~~~~l 580 (804)
...|..+...+......++..+..+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333434333444333333
No 316
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.52 E-value=40 Score=33.32 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHh
Q 003678 708 NERKKLEEELMEVNNKVAELTSETGEAAIQKL 739 (804)
Q Consensus 708 ~~~~~le~el~~l~~~l~~l~~~~~~~~~~~l 739 (804)
....+++..|..|+..|..++.......+..+
T Consensus 182 EKnk~lq~QL~~L~~EL~~~kde~k~T~~D~~ 213 (246)
T PF00769_consen 182 EKNKRLQEQLKELKSELEQLKDEEKQTQLDII 213 (246)
T ss_dssp HH-HHHHHHHHHHHHHHHTTB-CCG--HHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 34457777888888887777655444333333
No 317
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=85.12 E-value=0.71 Score=42.38 Aligned_cols=61 Identities=21% Similarity=0.457 Sum_probs=41.8
Q ss_pred HHHHhHHhHhcCC--CcccccccccccCCceec-cCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 735 AIQKLQDEIKDCK--AILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 735 ~~~~l~~e~~~~~--~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
++..|...+...- +...|.+|+...-..+.. .||-.+-.+|+++.+.. -..||.||-.|..
T Consensus 165 alaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 165 ALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4444444443332 335799998776554433 78777888999999995 5569999987764
No 318
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.11 E-value=44 Score=33.50 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003678 572 DMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQ 621 (804)
Q Consensus 572 ~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~ 621 (804)
.++.++..+..++-...+-+.+...+...++..+..+..+...++.++..
T Consensus 103 qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 103 QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444444444444444444444444444444333333
No 319
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.06 E-value=0.66 Score=46.24 Aligned_cols=48 Identities=19% Similarity=0.642 Sum_probs=36.8
Q ss_pred ccccccccccC--C--ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~--~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
-.||+|..... + .+-.+|||..|..|..+... ....||.|++++-.+-
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 57999988663 2 22238999999999999988 4677999997765543
No 320
>PLN02189 cellulose synthase
Probab=84.88 E-value=0.6 Score=54.31 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=36.3
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|.||.+...- +.+--||--.|.+|..---+.++..||.|+..|.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 379999988642 4444688889999997766667778999999987
No 321
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=84.86 E-value=0.88 Score=40.05 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=34.2
Q ss_pred cccccccccccCCceeccCC--Ccc---cHHHHHHHhhcCC-CCccccCcCCCCC
Q 003678 749 ILKCGVCFDRPKEVVITKCF--HLF---CNPCIQRNLEIRH-RKCPGCGTAFGQS 797 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~--H~f---C~~Ci~~~~~~~~-~~CP~C~~~~~~~ 797 (804)
...|-||++.... ...||. .++ -.+|+.+|+.... ..||.|+.+|.-.
T Consensus 8 ~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 8 DKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3579999887653 334554 433 7899999998653 3599999998643
No 322
>PF15616 TerY-C: TerY-C metal binding domain
Probab=84.73 E-value=0.5 Score=40.54 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.3
Q ss_pred CcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 748 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
....||.|...+-=++. .||++||..= .....||-|+....
T Consensus 76 g~PgCP~CGn~~~fa~C-~CGkl~Ci~g------~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAVC-GCGKLFCIDG------EGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhcEEEe-cCCCEEEeCC------CCCEECCCCCCeee
Confidence 33789999988776666 8999999432 13557999997644
No 323
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.73 E-value=30 Score=31.22 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 003678 709 ERKKLEEELMEVNNKV 724 (804)
Q Consensus 709 ~~~~le~el~~l~~~l 724 (804)
.+++-+.++..++.++
T Consensus 134 e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555555443
No 324
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.72 E-value=68 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHH
Q 003678 523 AAEAEIIELVAKLDASERDVMELEEA 548 (804)
Q Consensus 523 ~le~el~~l~~~l~~~~~~~~~l~~~ 548 (804)
.+..++..++.++..+..++..|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433
No 325
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=0.65 Score=41.00 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=25.6
Q ss_pred cCCCcccHHHHHHHhhc----CCC------CccccCcCCCC
Q 003678 766 KCFHLFCNPCIQRNLEI----RHR------KCPGCGTAFGQ 796 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~----~~~------~CP~C~~~~~~ 796 (804)
.||..|-.-|+..|+.. |+. .||-|..|+..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 79999999999999873 433 49999998864
No 326
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=28 Score=38.18 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 689 YEQIQRKTEDMRKELENERNERKKLEEELMEVN 721 (804)
Q Consensus 689 l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~ 721 (804)
+..+...+..+..++.+.......|+..+..+.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 327
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.22 E-value=80 Score=35.76 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 003678 647 ALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQI 692 (804)
Q Consensus 647 ~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~ 692 (804)
+..+..-+..+.......-.++.++..++..|...++....+....
T Consensus 228 l~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 228 LDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3334444444444444445556666666666776666655555444
No 328
>PLN02436 cellulose synthase A
Probab=84.12 E-value=0.67 Score=53.97 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.4
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|.||.+...- +.+--||--.|..|..--.+..+..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 379999988632 4444677779999997766667778999999987
No 329
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=84.06 E-value=0.62 Score=38.76 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.1
Q ss_pred CcccccccccccCC
Q 003678 748 AILKCGVCFDRPKE 761 (804)
Q Consensus 748 ~~l~C~iC~~~~~~ 761 (804)
....||.|+.+|.+
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 34567777777754
No 330
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=57 Score=33.69 Aligned_cols=76 Identities=17% Similarity=0.393 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCCcccccccccccCC----ceecc--CCCcccH
Q 003678 700 RKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKE----VVITK--CFHLFCN 773 (804)
Q Consensus 700 ~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~----~v~~~--C~H~fC~ 773 (804)
...+.....-..++..++..++..|+.-...... .-..+..++ -.|..|--.|.. +-.++ |+.+||.
T Consensus 426 ~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~-le~ql~~~v------e~c~~~~aS~~slk~e~erl~qq~eqi~~~ 498 (542)
T KOG0993|consen 426 QQELDASEHVQEDLVKEIQSLQEQLEKERQSEQE-LEWQLDDDV------EQCSNCDASFASLKVEPERLHQQCEQIFCM 498 (542)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3333333344455566666666655554333322 111222222 258888666643 33333 9999999
Q ss_pred HHHHHHhhc
Q 003678 774 PCIQRNLEI 782 (804)
Q Consensus 774 ~Ci~~~~~~ 782 (804)
.|.+.....
T Consensus 499 ~~~Katvp~ 507 (542)
T KOG0993|consen 499 NCLKATVPS 507 (542)
T ss_pred hHHHhhccc
Confidence 999987654
No 331
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.54 E-value=0.57 Score=38.61 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 768 FHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 768 ~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
..-||..|-...+.. ||.|..++...+
T Consensus 27 ~eafcskcgeati~q----cp~csasirgd~ 53 (160)
T COG4306 27 MEAFCSKCGEATITQ----CPICSASIRGDY 53 (160)
T ss_pred HHHHHhhhchHHHhc----CCccCCcccccc
Confidence 346999999887664 999999987665
No 332
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.51 E-value=33 Score=37.70 Aligned_cols=6 Identities=33% Similarity=0.844 Sum_probs=2.2
Q ss_pred CchhHH
Q 003678 47 PPEDMF 52 (804)
Q Consensus 47 ~~~~~~ 52 (804)
|....+
T Consensus 112 P~eeA~ 117 (652)
T COG2433 112 PYEEAY 117 (652)
T ss_pred hHHHHH
Confidence 333333
No 333
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.48 E-value=60 Score=33.77 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 527 EIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 574 (804)
Q Consensus 527 el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~ 574 (804)
.+.+++.++.........+..++..+..+..++...+...+..+..++
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq 61 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQ 61 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344344433333333333333333333333333333333333333
No 334
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.33 E-value=18 Score=27.70 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003678 562 EMETIGQAFEDMQTQ 576 (804)
Q Consensus 562 e~~~l~~~~~~l~~~ 576 (804)
+...+++....+++.
T Consensus 54 en~qLk~E~~~Wqer 68 (79)
T PRK15422 54 ENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 335
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=83.33 E-value=0.58 Score=51.36 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.3
Q ss_pred ccccccccccCC---------ceeccCCCcccHHHHHHHhhc
Q 003678 750 LKCGVCFDRPKE---------VVITKCFHLFCNPCIQRNLEI 782 (804)
Q Consensus 750 l~C~iC~~~~~~---------~v~~~C~H~fC~~Ci~~~~~~ 782 (804)
-.|..|...|.. .-+-.||++||..|.......
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~y 502 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHY 502 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccC
Confidence 469999999953 223379999999999877643
No 336
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.28 E-value=44 Score=31.98 Aligned_cols=65 Identities=17% Similarity=0.039 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 582 QQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTE 646 (804)
Q Consensus 582 ~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~ 646 (804)
.++..|++.+..+..-...+...+..|....+.++.--....-.++.+.+++...-+....++.+
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESE 155 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESE 155 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333444444333333333333333334444444333333333333
No 337
>PLN02195 cellulose synthase A
Probab=83.19 E-value=0.95 Score=52.37 Aligned_cols=46 Identities=20% Similarity=0.595 Sum_probs=36.3
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|-||++...- +.+.-||--.|.+|..---+.+...||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 479999886532 5556899889999997655556677999999998
No 338
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=83.11 E-value=0.51 Score=55.61 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=33.5
Q ss_pred ccccccccccCCceeccCCCc-----ccHHHHHHHhh--cCCCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHL-----FCNPCIQRNLE--IRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~-----fC~~Ci~~~~~--~~~~~CP~C~~~~~~~d 798 (804)
..||-|+.......+-.||+. +|..|-...-. +....||.|+.+.....
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ 723 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccc
Confidence 689999875444444569955 49999875321 11347999998887654
No 339
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=82.96 E-value=0.29 Score=38.75 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=24.0
Q ss_pred ccccccccccCCceec-----------cCCCcccHHHHHHHhhcCCCCccccCcCC
Q 003678 750 LKCGVCFDRPKEVVIT-----------KCFHLFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-----------~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
-.||.|....-+...+ |+|=++|+.+ |.++|+.||..|
T Consensus 50 ggCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 50 GGCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred cCCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 3699996554332222 4555544433 778999999887
No 340
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.82 E-value=0.52 Score=49.72 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCcccccccccccC-----CceeccCCCcccHHHHHHHhhcCCCCccc
Q 003678 747 KAILKCGVCFDRPK-----EVVITKCFHLFCNPCIQRNLEIRHRKCPG 789 (804)
Q Consensus 747 ~~~l~C~iC~~~~~-----~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~ 789 (804)
..+..||.|+-.+. ++++-+|||-||..|.-.|.. .+..|+.
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~ 350 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYE 350 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccC
Confidence 45678999965542 355557999999999988766 3444543
No 341
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=82.63 E-value=44 Score=32.75 Aligned_cols=44 Identities=7% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003678 689 YEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETG 732 (804)
Q Consensus 689 l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~ 732 (804)
+..++........-+..-...+.++-.+++.++..+++-+....
T Consensus 289 lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~ms 332 (384)
T KOG0972|consen 289 LSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMS 332 (384)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33333333333333333333344455555555555555554443
No 342
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.31 E-value=0.36 Score=46.91 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=36.5
Q ss_pred cCCCcccccccccccCCceeccCCC-cccHHHHHHHhhcCCCCccccCcCCC
Q 003678 745 DCKAILKCGVCFDRPKEVVITKCFH-LFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 745 ~~~~~l~C~iC~~~~~~~v~~~C~H-~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.++....|.+|+..-.=....+||| +||-.|.-..-..|.+.||+|-..|.
T Consensus 132 ~~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 132 PKGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred cccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 3455677888865544344458997 67999977664448899999998775
No 343
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.21 E-value=98 Score=35.26 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 003678 524 AEAEIIELVAKLDASERDVMELEEAM-----KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSES 598 (804)
Q Consensus 524 le~el~~l~~~l~~~~~~~~~l~~~l-----~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~ 598 (804)
++.+...|++++.-+..++.+-+..- ....-++-.|+.---.++.++.+.......+.....++-..+.....|.
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003678 599 VKTKQVQ----SFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKE 674 (804)
Q Consensus 599 ~~~~~~~----~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~ 674 (804)
.++...+ ..+..-......+...++-+++.....+..+.-.+...+.+-.-+.-.+++...++..++.-...|+..
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 003678 675 LKWLKSAVT 683 (804)
Q Consensus 675 ~~~l~~~l~ 683 (804)
+..+-..+.
T Consensus 552 ma~lL~dls 560 (861)
T PF15254_consen 552 MAKLLSDLS 560 (861)
T ss_pred HHHHhhhcc
No 344
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=82.16 E-value=0.92 Score=53.06 Aligned_cols=46 Identities=26% Similarity=0.653 Sum_probs=36.0
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|-||++...- +.+--||--.|.+|..-=-+.+...||.|+..|.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 379999988642 5555788889999997655556777999999987
No 345
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.04 E-value=91 Score=34.81 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003678 252 EEAQQDNINLSKQLENL 268 (804)
Q Consensus 252 ~~l~~~~~~l~~el~~l 268 (804)
..+..++..+...+..+
T Consensus 119 ~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 119 QELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444444
No 346
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.01 E-value=40 Score=34.23 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003678 708 NERKKLEEELMEVNNKVA 725 (804)
Q Consensus 708 ~~~~~le~el~~l~~~l~ 725 (804)
.....+..++..++..++
T Consensus 226 ~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 347
>PHA02862 5L protein; Provisional
Probab=81.69 E-value=1.1 Score=38.39 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=33.4
Q ss_pred ccccccccccCCceeccCCC-----cccHHHHHHHhhcCCC-CccccCcCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFH-----LFCNPCIQRNLEIRHR-KCPGCGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H-----~fC~~Ci~~~~~~~~~-~CP~C~~~~~~ 796 (804)
-.|=||+..-.+. ..||+= -.-..|+..|+...+. .||.|+.+|.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3699998886554 366642 3368999999986444 59999998863
No 348
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.66 E-value=72 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003678 584 VAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQ 620 (804)
Q Consensus 584 ~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~ 620 (804)
+..++.++..+......+......+..+...+...+.
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344444444444444444444444333333333333
No 349
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.58 E-value=59 Score=32.32 Aligned_cols=14 Identities=21% Similarity=-0.016 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 003678 602 KQVQSFLLSEKQAL 615 (804)
Q Consensus 602 ~~~~~~l~~e~~~l 615 (804)
...+..+..+++.+
T Consensus 55 ~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 55 LAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 350
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=81.57 E-value=0.96 Score=44.06 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=26.7
Q ss_pred ceeccCCCcccHHHHHHHhhcC--------CCCccccCcCCCCC
Q 003678 762 VVITKCFHLFCNPCIQRNLEIR--------HRKCPGCGTAFGQS 797 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~~--------~~~CP~C~~~~~~~ 797 (804)
..+.||||+.-..-..-|.... +.-||+|...+...
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 4556999998888888887642 33499999887654
No 351
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.57 E-value=1.1e+02 Score=35.59 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 702 ELENERNERKKLEEELMEVNNKVAELTS 729 (804)
Q Consensus 702 ~l~~~~~~~~~le~el~~l~~~l~~l~~ 729 (804)
+|.....++...++.|..|-+.|..|..
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444455556666666666655543
No 352
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=81.52 E-value=0.55 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.743 Sum_probs=17.5
Q ss_pred Cccccccccccc----CCceeccCCCcccHHHHH
Q 003678 748 AILKCGVCFDRP----KEVVITKCFHLFCNPCIQ 777 (804)
Q Consensus 748 ~~l~C~iC~~~~----~~~v~~~C~H~fC~~Ci~ 777 (804)
.++.||+|+..- ..-..+.=+-+||..|-+
T Consensus 3 ~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~ 36 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQ 36 (55)
T ss_pred eEEECCCCCCccceeeecCceeccccccCCCCCc
Confidence 468899997433 333444556666655543
No 353
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.77 E-value=1e+02 Score=34.48 Aligned_cols=9 Identities=0% Similarity=-0.396 Sum_probs=4.3
Q ss_pred cCCCcccHH
Q 003678 766 KCFHLFCNP 774 (804)
Q Consensus 766 ~C~H~fC~~ 774 (804)
+++|..|+.
T Consensus 458 ~~~~~~~~d 466 (511)
T PF09787_consen 458 LLMKDSPHD 466 (511)
T ss_pred hhccCCCcc
Confidence 344444554
No 354
>PF12773 DZR: Double zinc ribbon
Probab=80.68 E-value=1.3 Score=31.06 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=23.9
Q ss_pred ccccccccCCceeccCCCcccHHHHHHHh--hcCCCCccccCcCCCCCC
Q 003678 752 CGVCFDRPKEVVITKCFHLFCNPCIQRNL--EIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 752 C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~--~~~~~~CP~C~~~~~~~d 798 (804)
||-|...... +-.||..|-.... ......||.|+.....+.
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 5555554332 3556666666655 333456888888765543
No 355
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.61 E-value=1.8 Score=30.44 Aligned_cols=42 Identities=33% Similarity=0.677 Sum_probs=32.2
Q ss_pred ccccccccccC--C--ceeccCCCcccHHHHHHHhhcCCCCccc--cCcCCCC
Q 003678 750 LKCGVCFDRPK--E--VVITKCFHLFCNPCIQRNLEIRHRKCPG--CGTAFGQ 796 (804)
Q Consensus 750 l~C~iC~~~~~--~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP~--C~~~~~~ 796 (804)
-.|++|.+.|+ + +|...||=.+=..|-. +...|-. |+.+|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~-----~~g~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE-----KAGGCINYSCGTGFEW 53 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh-----hCCceEeccCCCCccc
Confidence 57999999995 3 3344799999999988 4556877 9888863
No 356
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=80.35 E-value=1.1 Score=52.10 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=36.6
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|.||++...- +.+.-||--.|.+|..--.+.+...||.|+.+|.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999888643 4555788889999997666666777999999987
No 357
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=80.29 E-value=0.58 Score=52.33 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.0
Q ss_pred ccccccccccC--CceeccCCCcccHHHHHHHhhcC-----CCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPK--EVVITKCFHLFCNPCIQRNLEIR-----HRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~--~~v~~~C~H~fC~~Ci~~~~~~~-----~~~CP~C~~~~~~~d 798 (804)
-.|..|..... ..+...|||.||..|+..|+-.. ..+||.|+..-...+
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q 285 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQ 285 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCCcc
Confidence 47999977655 47778999999999999997211 225887765544433
No 358
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.25 E-value=70 Score=32.41 Aligned_cols=15 Identities=13% Similarity=-0.177 Sum_probs=9.6
Q ss_pred hHHHHHHHHhhhcCC
Q 003678 11 LFVDDLILLGVRAGG 25 (804)
Q Consensus 11 ~l~~~~~~l~~~~~~ 25 (804)
-|++=|..|.+.|+.
T Consensus 123 dLv~Liq~l~a~f~~ 137 (365)
T KOG2391|consen 123 DLVGLIQELIAAFSE 137 (365)
T ss_pred hHHHHHHHHHHHhcC
Confidence 456666667777773
No 359
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.13 E-value=63 Score=31.70 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 003678 709 ERKKLEEELMEVNNKVAELTSE 730 (804)
Q Consensus 709 ~~~~le~el~~l~~~l~~l~~~ 730 (804)
-+.++=.+|..-..+++.|-..
T Consensus 146 GiQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 146 GIQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred hHHHHHhhhhhhHhHHHHHHHH
Confidence 3444444555555555554443
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.90 E-value=2.6 Score=40.12 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=51.0
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCccccc
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVK 803 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~ 803 (804)
++|.|-...+++|||+|-|-++=..=|..++..-+++-|..|.++....+.|+|
T Consensus 212 lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 212 LCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 799999999999999999999999999999998899999999999999888876
No 361
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=79.82 E-value=49 Score=30.31 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=13.0
Q ss_pred HHhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003678 584 VAERDDLNIKLVSESVKTKQVQSFLLSE 611 (804)
Q Consensus 584 ~~~l~~~~~~l~~e~~~~~~~~~~l~~e 611 (804)
+..|++.|..|.-++..+...+..+..+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~e 33 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRE 33 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444445555555554444444444333
No 362
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.77 E-value=1.6e+02 Score=36.15 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003678 478 MEIKESERRAHSQAEVLKNAL 498 (804)
Q Consensus 478 ~~l~~~~~~~~~e~~~l~~~l 498 (804)
..|++......+++..++..+
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l 125 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQA 125 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.69 E-value=85 Score=32.95 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-
Q 003678 519 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSE- 597 (804)
Q Consensus 519 ~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e- 597 (804)
.++..==..|.+....++.++.++......+.....+.+.+...+..-....+.-+.........+......+.....+
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a 80 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEA 80 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Q 003678 598 SVKTKQVQSFLLSEKQALARQLQQINALVES------------------------------------------------- 628 (804)
Q Consensus 598 ~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~------------------------------------------------- 628 (804)
...+....-.+......+..--..--.++..
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L~ 160 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRLK 160 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHHH
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 629 ------------------------AKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTS 684 (804)
Q Consensus 629 ------------------------~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 684 (804)
--..+.........+-.-+..+.. .......+.-.+..+..++..+......+..
T Consensus 161 ~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~-Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~ 239 (344)
T PF12777_consen 161 NFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVK-YYEVNKEVEPKRQKLEEAEAELEEAEEQLAE 239 (344)
T ss_dssp HS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--hHHHHhHHhHhcCCCcccccccccccCCc
Q 003678 685 SDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDRPKEV 762 (804)
Q Consensus 685 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l~C~iC~~~~~~~ 762 (804)
.+..+..+...+..+..+++........++.++.....++.+......+ +...+....+..+...+.+-+..-.+...
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa 319 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA 319 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH
Q ss_pred eeccCC
Q 003678 763 VITKCF 768 (804)
Q Consensus 763 v~~~C~ 768 (804)
.++.||
T Consensus 320 ~isY~G 325 (344)
T PF12777_consen 320 FISYLG 325 (344)
T ss_dssp HHHCCC
T ss_pred HHHHcC
No 364
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.36 E-value=1.3 Score=27.84 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=8.6
Q ss_pred CCCCccccCcCC
Q 003678 783 RHRKCPGCGTAF 794 (804)
Q Consensus 783 ~~~~CP~C~~~~ 794 (804)
..-.||.|+.+-
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 345799999753
No 365
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.28 E-value=0.61 Score=47.51 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred ceeccCCCcccHHHHHHHhh--cCCCCccccCcC
Q 003678 762 VVITKCFHLFCNPCIQRNLE--IRHRKCPGCGTA 793 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~--~~~~~CP~C~~~ 793 (804)
.|.+.|||++...=--.... .+.+.||.|+..
T Consensus 304 ~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------
T ss_pred eeeccccceeeecccccccccccccccCCCcccc
Confidence 57779999997653222112 247889999854
No 366
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=79.20 E-value=0.67 Score=33.21 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=4.4
Q ss_pred CccccCcCCCC
Q 003678 786 KCPGCGTAFGQ 796 (804)
Q Consensus 786 ~CP~C~~~~~~ 796 (804)
.||.|+.+|+.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 56666666654
No 367
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.04 E-value=1.4e+02 Score=35.20 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 003678 132 EEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAGELEETMAELEESRR 188 (804)
Q Consensus 132 ~e~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~e~~~l~~~l~~l~~el~~~~~ 188 (804)
.+.+.+....+.+...++.+..++..+.+....++.++.++..++.....++.....
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~ 304 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALA 304 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555545444444444444444444444444444444333
No 368
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=78.92 E-value=0.85 Score=32.67 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=26.5
Q ss_pred cccccccccccCCceeccCCCcccHHHHHHHhhc-CCCCccccCcCCCC
Q 003678 749 ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEI-RHRKCPGCGTAFGQ 796 (804)
Q Consensus 749 ~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~-~~~~CP~C~~~~~~ 796 (804)
.+.||.|...|.. ..++..|....... ..-.||+|...++.
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 4789999884432 23455666655443 23459999987775
No 369
>PLN02400 cellulose synthase
Probab=78.86 E-value=1.1 Score=52.40 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=35.5
Q ss_pred ccccccccccCC-------ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 750 LKCGVCFDRPKE-------VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 750 l~C~iC~~~~~~-------~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
..|-||.+...- +.+.-||--.|.+|..---+.+...||.|+..|.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 379999988643 4555788789999997555555667999999987
No 370
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.63 E-value=77 Score=31.89 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=4.3
Q ss_pred ccccCcCCC
Q 003678 787 CPGCGTAFG 795 (804)
Q Consensus 787 CP~C~~~~~ 795 (804)
=|.|+..+|
T Consensus 381 Gpf~~hVig 389 (401)
T PF06785_consen 381 GPFRNHVIG 389 (401)
T ss_pred cchHHHHHh
Confidence 455554444
No 372
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.61 E-value=1.5 Score=36.48 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=32.0
Q ss_pred ccccccccccCCce--------------eccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 750 LKCGVCFDRPKEVV--------------ITKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 750 l~C~iC~~~~~~~v--------------~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
..|-.|...|..+. -..|.+.||.+|---+.++ -..||.|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~-Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES-LHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh-ccCCcCCCC
Confidence 35999999887541 4489999999997766663 556999963
No 373
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=77.90 E-value=0.7 Score=52.05 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=0.0
Q ss_pred ccccccccccCCceeccCC-C----cccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCF-H----LFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~-H----~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
..||-|...--...+-.|| | -||..|-...- ...||.|+..+....
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~---~~~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVE---EDECPKCGRETTSYS 706 (900)
T ss_dssp ------------------------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccccceeccccccccC---ccccccccccCcccc
Confidence 5899998765555555688 4 36999998763 348999998877654
No 374
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.85 E-value=1.2e+02 Score=33.49 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 693 QRKTEDMRKELENERNERKKLEEELM 718 (804)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~~~le~el~ 718 (804)
...+.....++...+..+..++..+.
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444443
No 375
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=77.64 E-value=0.87 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.731 Sum_probs=20.8
Q ss_pred cccHHHHHHHhhcCCC--CccccCcCCCCC
Q 003678 770 LFCNPCIQRNLEIRHR--KCPGCGTAFGQS 797 (804)
Q Consensus 770 ~fC~~Ci~~~~~~~~~--~CP~C~~~~~~~ 797 (804)
..|.+|-.++|..+.. .||.||..|...
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 3588888888875332 499999999876
No 376
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=77.54 E-value=2.1 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.908 Sum_probs=16.2
Q ss_pred ccHHHHHHHhhcCCC-------CccccCcCCCC
Q 003678 771 FCNPCIQRNLEIRHR-------KCPGCGTAFGQ 796 (804)
Q Consensus 771 fC~~Ci~~~~~~~~~-------~CP~C~~~~~~ 796 (804)
+|..|.........| .||.||-.|.-
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~i 33 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYSI 33 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEEE
Confidence 488898887654333 49999988764
No 377
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.46 E-value=1.3 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=16.8
Q ss_pred ccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 771 FCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 771 fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
+|..|-...-. ..++||.||.+++.
T Consensus 29 ~Cp~CG~~~~~-~~~fC~~CG~~~~~ 53 (645)
T PRK14559 29 PCPQCGTEVPV-DEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCCCCc-ccccccccCCcccc
Confidence 46666665444 56778888877764
No 378
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=1e+02 Score=32.58 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003678 284 YNLVNDQLQHWNVEVERYKALTDSLLI 310 (804)
Q Consensus 284 ~~~l~~~l~~l~~el~~~~~~~~~l~~ 310 (804)
...+...+..+...+.++....+....
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666555433
No 379
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=76.58 E-value=0.36 Score=30.11 Aligned_cols=25 Identities=36% Similarity=0.894 Sum_probs=12.2
Q ss_pred CcccHHHHHHHhhc---CCCCccccCcC
Q 003678 769 HLFCNPCIQRNLEI---RHRKCPGCGTA 793 (804)
Q Consensus 769 H~fC~~Ci~~~~~~---~~~~CP~C~~~ 793 (804)
|.||..|-...... ..+.||.|+..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 67777777665443 23458888753
No 380
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=76.56 E-value=84 Score=31.20 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 003678 77 ALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEK 113 (804)
Q Consensus 77 ~l~~~~~~~~~~~~kl~~~~~~l~~~~~~l~~el~~~ 113 (804)
.+..++...-.+.+.+....+..-+..-.+...|..-
T Consensus 54 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~W 90 (271)
T PF13805_consen 54 ELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEW 90 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666677777777777666665555543
No 381
>PRK10869 recombination and repair protein; Provisional
Probab=76.49 E-value=1.4e+02 Score=33.74 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 003678 443 IKSLKALIEK 452 (804)
Q Consensus 443 i~~l~~~l~~ 452 (804)
+..++.++..
T Consensus 187 ~d~l~fql~E 196 (553)
T PRK10869 187 KQLLQYQLKE 196 (553)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 382
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=76.48 E-value=1.1 Score=28.84 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.9
Q ss_pred ccccccccccC
Q 003678 750 LKCGVCFDRPK 760 (804)
Q Consensus 750 l~C~iC~~~~~ 760 (804)
+.||-|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 56888877764
No 383
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=76.38 E-value=2 Score=29.67 Aligned_cols=39 Identities=28% Similarity=0.754 Sum_probs=23.7
Q ss_pred ccccccccCC--ceeccCCC-----cccHHHHHHHhhc-CCCCcccc
Q 003678 752 CGVCFDRPKE--VVITKCFH-----LFCNPCIQRNLEI-RHRKCPGC 790 (804)
Q Consensus 752 C~iC~~~~~~--~v~~~C~H-----~fC~~Ci~~~~~~-~~~~CP~C 790 (804)
|-||++.... +.+.||+= ..=..|+..|+.. +..+||.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788766543 57788862 2256799999985 34569988
No 384
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.97 E-value=1.4 Score=35.20 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=11.3
Q ss_pred CCCCccccCcCCCC
Q 003678 783 RHRKCPGCGTAFGQ 796 (804)
Q Consensus 783 ~~~~CP~C~~~~~~ 796 (804)
+...||.||.+|..
T Consensus 48 G~t~CP~Cg~~~e~ 61 (115)
T COG1885 48 GSTSCPKCGEPFES 61 (115)
T ss_pred ccccCCCCCCccce
Confidence 56679999999875
No 385
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=75.86 E-value=65 Score=29.56 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003678 517 CQQRLSAAEAEIIELVAKLD 536 (804)
Q Consensus 517 ~~~~l~~le~el~~l~~~l~ 536 (804)
++.+|..++-+.......+.
T Consensus 9 LQeKIrrLELER~qAe~nl~ 28 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNLK 28 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333
No 386
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.79 E-value=0.4 Score=44.55 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=13.6
Q ss_pred CCcccccccccccCC-ceec
Q 003678 747 KAILKCGVCFDRPKE-VVIT 765 (804)
Q Consensus 747 ~~~l~C~iC~~~~~~-~v~~ 765 (804)
+..+.||+|...|+. .|.+
T Consensus 17 kk~ieCPvC~tkFkkeev~t 36 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKT 36 (267)
T ss_pred hceeccCcccchhhhhheec
Confidence 345899999999864 4444
No 387
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=75.66 E-value=1.3e+02 Score=32.95 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=9.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 003678 172 LAGELEETMAELEESRRKLVSL 193 (804)
Q Consensus 172 l~~~l~~l~~el~~~~~~~~~l 193 (804)
++.++..+..++......+..+
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~f 197 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAY 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 388
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=75.23 E-value=1.6 Score=42.19 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=32.0
Q ss_pred CcccccccccccCCceec----cCCCcc--cHHHHHHHhhcCCCCccccCcC
Q 003678 748 AILKCGVCFDRPKEVVIT----KCFHLF--CNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~----~C~H~f--C~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
..-.||+|+......++. .=|-.| |.-|-..|.-. ..||-.|+..
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V-R~KC~nC~~t 234 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV-RVKCSNCEQS 234 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH-HHHhcccccc
Confidence 345899999887654433 345455 99999999874 4568888754
No 389
>PRK05978 hypothetical protein; Provisional
Probab=75.19 E-value=1.7 Score=38.37 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=23.0
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQS 797 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 797 (804)
.+||-|.+ ||+|- .+++. ...||.||..|+..
T Consensus 34 grCP~CG~----------G~LF~-----g~Lkv-~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLKP-VDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----ccccc-CCCccccCCccccC
Confidence 57998865 56662 55553 55699999999865
No 390
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=75.12 E-value=1.2e+02 Score=32.48 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003678 119 AIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYA 152 (804)
Q Consensus 119 ~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~ 152 (804)
...|+......+..+...+...++.|+.-...+.
T Consensus 200 ~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LR 233 (424)
T PF03915_consen 200 NRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLR 233 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666555555555555554444443
No 391
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=74.09 E-value=1.5 Score=28.47 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=7.9
Q ss_pred ccccccccccC
Q 003678 750 LKCGVCFDRPK 760 (804)
Q Consensus 750 l~C~iC~~~~~ 760 (804)
..||-|...|+
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 46888877764
No 392
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.84 E-value=1.2e+02 Score=31.77 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 003678 517 CQQRLSAAEAEIIE 530 (804)
Q Consensus 517 ~~~~l~~le~el~~ 530 (804)
+..++..++..+.+
T Consensus 220 i~~kv~flerkv~e 233 (502)
T KOG0982|consen 220 IERKVRFLERKVQE 233 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 393
>PRK01343 zinc-binding protein; Provisional
Probab=73.78 E-value=2.4 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=8.5
Q ss_pred CCCCccccCcCCC
Q 003678 783 RHRKCPGCGTAFG 795 (804)
Q Consensus 783 ~~~~CP~C~~~~~ 795 (804)
...+||+|+.+|.
T Consensus 8 p~~~CP~C~k~~~ 20 (57)
T PRK01343 8 PTRPCPECGKPST 20 (57)
T ss_pred CCCcCCCCCCcCc
Confidence 3456777777765
No 394
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.76 E-value=1.8 Score=36.47 Aligned_cols=29 Identities=7% Similarity=-0.112 Sum_probs=18.1
Q ss_pred CCCcccccccccccCC----ceec-cCCCcccHH
Q 003678 746 CKAILKCGVCFDRPKE----VVIT-KCFHLFCNP 774 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~----~v~~-~C~H~fC~~ 774 (804)
+-....||.|..+|.+ |++. +||+.|=..
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 3344679999888854 4444 577766433
No 395
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.41 E-value=2.2 Score=41.64 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=32.4
Q ss_pred HHHHhHHhHhcCCCccccccccccc--------------CCceeccCCCcccHHHHH--HHhhcCCCCccccCc
Q 003678 735 AIQKLQDEIKDCKAILKCGVCFDRP--------------KEVVITKCFHLFCNPCIQ--RNLEIRHRKCPGCGT 792 (804)
Q Consensus 735 ~~~~l~~e~~~~~~~l~C~iC~~~~--------------~~~v~~~C~H~fC~~Ci~--~~~~~~~~~CP~C~~ 792 (804)
.++.+..+|..-+ ..||+=...+ .-.|.+.|||+-...=-- ..-..+.|.||+|+.
T Consensus 278 ~lE~~~~~iNA~R--PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 278 HLEALRQEINAAR--PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV 349 (429)
T ss_pred HHHHHHHHHhccC--CCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeee
Confidence 3455555555544 5788853332 115777999997543221 111225778999985
No 396
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.86 E-value=1e+02 Score=30.47 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003678 661 LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 728 (804)
Q Consensus 661 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l~ 728 (804)
.+...+.+.....++..+...+...+.++..+..++.++...+..+..+..++...+.-++.++..+.
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555566666666666666666666666666666666677777776776666653
No 397
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.66 E-value=1.9 Score=27.28 Aligned_cols=10 Identities=50% Similarity=1.202 Sum_probs=7.9
Q ss_pred CCCccccCcC
Q 003678 784 HRKCPGCGTA 793 (804)
Q Consensus 784 ~~~CP~C~~~ 793 (804)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3479999985
No 398
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.50 E-value=36 Score=25.14 Aligned_cols=10 Identities=40% Similarity=0.315 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003678 523 AAEAEIIELV 532 (804)
Q Consensus 523 ~le~el~~l~ 532 (804)
.+.-++++++
T Consensus 22 LLQmEieELK 31 (79)
T COG3074 22 LLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 399
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=72.25 E-value=0.81 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=17.0
Q ss_pred ccCCCcccHHHHHHHhhcCCCCccccCc
Q 003678 765 TKCFHLFCNPCIQRNLEIRHRKCPGCGT 792 (804)
Q Consensus 765 ~~C~H~fC~~Ci~~~~~~~~~~CP~C~~ 792 (804)
..|||.|-...--.- .....||.||.
T Consensus 9 ~~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 578888865442222 24567999987
No 400
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.03 E-value=2.1 Score=28.17 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.7
Q ss_pred CCCCccccCcCCC
Q 003678 783 RHRKCPGCGTAFG 795 (804)
Q Consensus 783 ~~~~CP~C~~~~~ 795 (804)
....||.|+.||.
T Consensus 7 p~K~C~~C~rpf~ 19 (42)
T PF10013_consen 7 PSKICPVCGRPFT 19 (42)
T ss_pred CCCcCcccCCcch
Confidence 4567999999996
No 401
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=72.02 E-value=0.79 Score=26.18 Aligned_cols=8 Identities=50% Similarity=1.314 Sum_probs=5.9
Q ss_pred CCccccCc
Q 003678 785 RKCPGCGT 792 (804)
Q Consensus 785 ~~CP~C~~ 792 (804)
..||.||.
T Consensus 17 f~CPnCG~ 24 (24)
T PF07754_consen 17 FPCPNCGF 24 (24)
T ss_pred EeCCCCCC
Confidence 45999973
No 402
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=1.4e+02 Score=31.62 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003678 565 TIGQAFEDMQTQN 577 (804)
Q Consensus 565 ~l~~~~~~l~~~~ 577 (804)
.+.+.|..+...+
T Consensus 499 kl~~Dyqairqen 511 (521)
T KOG1937|consen 499 KLHQDYQAIRQEN 511 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 403
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.90 E-value=1.3 Score=50.42 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=27.0
Q ss_pred CcccccccccccCCcee-------ccCCCcccHHHHHHHhhcCCCCccccCcC
Q 003678 748 AILKCGVCFDRPKEVVI-------TKCFHLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~-------~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
..+.|..|+-.++-|-+ ..=|.++|..|-.. ..-...||.||..
T Consensus 434 ~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~--~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ--EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC--CCCCCCCCCCCCC
Confidence 34567666655543111 13477889999876 2234569999976
No 404
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=71.86 E-value=1.5 Score=37.57 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=26.4
Q ss_pred cccccccccCCceeccCCCccc-HHHHHHHhhcCC
Q 003678 751 KCGVCFDRPKEVVITKCFHLFC-NPCIQRNLEIRH 784 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~fC-~~Ci~~~~~~~~ 784 (804)
.|.||+ .+.--..+.||-.|| -.|...+.+||.
T Consensus 120 fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneTRC 153 (156)
T KOG3362|consen 120 FCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNETRC 153 (156)
T ss_pred hhhhcC-CCchhHHHhcCCceeechhhhhcccccc
Confidence 699999 666677789999995 589998877754
No 405
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=71.76 E-value=2.2 Score=30.94 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=12.0
Q ss_pred CCCCccccCcCCCCC
Q 003678 783 RHRKCPGCGTAFGQS 797 (804)
Q Consensus 783 ~~~~CP~C~~~~~~~ 797 (804)
.++.||.||.++..+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 367899999998765
No 406
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.73 E-value=99 Score=29.81 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003678 519 QRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIG 567 (804)
Q Consensus 519 ~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~ 567 (804)
..|..+...-..+..+.....++-.-+--.+...+++...+.+.|..++
T Consensus 108 d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK 156 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLK 156 (330)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555544444444444444555555554444443
No 407
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.38 E-value=56 Score=26.82 Aligned_cols=64 Identities=8% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 655 RHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVA 725 (804)
Q Consensus 655 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~ 725 (804)
..+......++..+.+-+.....++..|...+..+..+...++.+ .++...+...+..+...+.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL-------~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL-------TFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455555444444444444444444 4444444444444444443
No 408
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=71.21 E-value=1.2 Score=42.75 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=36.6
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
++|+-|+..+.+.++..-|.+||..=+-.++.+ ||-.|...+-+..|
T Consensus 61 LkCs~C~~qL~drCFsR~~s~yCkedFfKrfGT---KCsaC~~GIpPtqV 107 (383)
T KOG4577|consen 61 LKCSDCHDQLADRCFSREGSVYCKEDFFKRFGT---KCSACQEGIPPTQV 107 (383)
T ss_pred cchhhhhhHHHHHHhhcCCceeehHHHHHHhCC---cchhhcCCCChHHH
Confidence 778888888888888888888888777666554 89999887766543
No 409
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.20 E-value=2 Score=43.46 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=37.0
Q ss_pred ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccccC
Q 003678 762 VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 804 (804)
|.++|=||++...-+.++-.-.+-.||.-+..|...+...+|+
T Consensus 346 P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy~ 388 (389)
T KOG0396|consen 346 PHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVYL 388 (389)
T ss_pred cccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHhc
Confidence 7888999999999999987755577999999999888888775
No 410
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=70.37 E-value=1 Score=44.94 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=29.0
Q ss_pred cccccccc-ccCC----ceeccCCCcccHHHHHHHhhc-----CC-CCccccCcCC
Q 003678 750 LKCGVCFD-RPKE----VVITKCFHLFCNPCIQRNLEI-----RH-RKCPGCGTAF 794 (804)
Q Consensus 750 l~C~iC~~-~~~~----~v~~~C~H~fC~~Ci~~~~~~-----~~-~~CP~C~~~~ 794 (804)
..|.+|.. .|.- .-.-.||++||..|....+-. .. +-|+.|=..+
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 57999988 5532 223489999999998874332 11 2477774333
No 411
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=69.85 E-value=2.9 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.6
Q ss_pred cccccccccCCceeccCCCcccHH
Q 003678 751 KCGVCFDRPKEVVITKCFHLFCNP 774 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~fC~~ 774 (804)
+|..|.....-.+.+.|||+||..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488888666556778999999954
No 412
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=2.1 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=17.0
Q ss_pred cHHHHHHHhhcCCC-------CccccCcCC
Q 003678 772 CNPCIQRNLEIRHR-------KCPGCGTAF 794 (804)
Q Consensus 772 C~~Ci~~~~~~~~~-------~CP~C~~~~ 794 (804)
|..|-..+-..-.| .||.||-..
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCCe
Confidence 99999987664333 399999754
No 413
>PF13166 AAA_13: AAA domain
Probab=69.34 E-value=2.4e+02 Score=33.25 Aligned_cols=203 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 003678 522 SAAEAEIIE-LVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVK 600 (804)
Q Consensus 522 ~~le~el~~-l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~ 600 (804)
......+.. +..........+..+...+......+......+-.....+.........+...+..+...+..+...+..
T Consensus 268 ~~~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 268 EERKERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003678 601 TKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKS 680 (804)
Q Consensus 601 ~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~ 680 (804)
-...... .-....+...+..+...+..+...+......+..+......+...+... .+......+..+...+..+..
T Consensus 348 K~~~~~~-~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~ 424 (712)
T PF13166_consen 348 KIKNPSS-PIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH--LIAKLKEDIEEYQKEIKELEK 424 (712)
T ss_pred HHhcccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003678 681 AVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAEL 727 (804)
Q Consensus 681 ~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l~~l 727 (804)
.+......+..+...+......+..+...+.....-...+...|..+
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 414
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=69.31 E-value=1.8e+02 Score=31.82 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhhhcC-CCCCcccccCCCCcCCCCC------------------CCCCchhHHHHHHhhhcccc
Q 003678 3 ITVNQLWNLFVDDLILLGVRAG-GGSNVLQKLDSENQTRDSI------------------PSGPPEDMFLCRLLQVNSIE 63 (804)
Q Consensus 3 ~~v~~~w~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~ 63 (804)
..++++-.-|-.+|+.++.+.| +|..|+....| -++ +++|.+.||=--|.
T Consensus 224 ~~~~k~a~f~~nnld~~~~~~~y~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~p~~~svpy~~a~~------ 292 (518)
T PF10212_consen 224 NGTGKIAAFFSNNLDFFTSSSGYGPKGATTFTNP-----LSAECMLQYKKRAAAYMSSLKKPCPESVPYEEALA------ 292 (518)
T ss_pred hhhHHHHHHHhcchHHhhcccccCCCcccccCCc-----cchHHHHHHHHHHHHHHHHhcCCCCccCChHHHHh------
Q ss_pred CCCCcc----chhHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHhccCh---------
Q 003678 64 SSSKDG----ILQYVEEALASRHSSARELMKFIEEVIDAQR--------------VKTKSIAEAFHEKLSA--------- 116 (804)
Q Consensus 64 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~kl~~~~~~l~--------------~~~~~l~~el~~~~~~--------- 116 (804)
++ +...-++.+...+.++.+-+.+|.+.-+.+. .++.++...+.....+
T Consensus 293 ----n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l 368 (518)
T PF10212_consen 293 ----NRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVL 368 (518)
T ss_pred ----hhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhh
Q ss_pred ------------------------------------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003678 117 ------------------------------------EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYIS 160 (804)
Q Consensus 117 ------------------------------------~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~e~~~~~~ 160 (804)
++...--.....-....+..|...+.....+...+..+...+..
T Consensus 369 ~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~ 448 (518)
T PF10212_consen 369 SEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQK 448 (518)
T ss_pred cccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhhhccCCCCCCCCCcchhccHHHHHHHHHHH
Q 003678 161 SHSVDQAEIQHLAGELEETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEA 240 (804)
Q Consensus 161 ~~~~~~~e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 240 (804)
.+...+.+...+..++......+..+...+..-+.... ..+..|.+.+..+
T Consensus 449 rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE-----------------------------~QLs~MSEHLasm 499 (518)
T PF10212_consen 449 RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE-----------------------------EQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------------------------HHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHH
Q 003678 241 KILAADRLSEVEEAQ 255 (804)
Q Consensus 241 ~~~~~~~~~el~~l~ 255 (804)
.+.+.....+|+.++
T Consensus 500 NeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 500 NEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHh
No 415
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.29 E-value=3.2 Score=30.11 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.8
Q ss_pred CCCccccCcCCCCC
Q 003678 784 HRKCPGCGTAFGQS 797 (804)
Q Consensus 784 ~~~CP~C~~~~~~~ 797 (804)
.++||.||++..-.
T Consensus 7 ~v~CP~Cgkpv~w~ 20 (65)
T COG3024 7 TVPCPTCGKPVVWG 20 (65)
T ss_pred cccCCCCCCccccc
Confidence 46799999887653
No 416
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=69.26 E-value=2.9e+02 Score=34.23 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=10.4
Q ss_pred CCccccCcCCCCCCc
Q 003678 785 RKCPGCGTAFGQSDV 799 (804)
Q Consensus 785 ~~CP~C~~~~~~~d~ 799 (804)
..+-+...||+.-|+
T Consensus 976 ~~~l~lDEp~~~lD~ 990 (1047)
T PRK10246 976 IDSLFLDEGFGTLDS 990 (1047)
T ss_pred CCEEEEeCCCCcCCH
Confidence 346677788887764
No 417
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=69.07 E-value=8.6 Score=35.22 Aligned_cols=34 Identities=26% Similarity=0.611 Sum_probs=22.2
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
+.||.|+.+|. | +.-.. -..+||.||...-..|-
T Consensus 114 y~C~~~~~r~s----------f-----deA~~-~~F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 114 YVCPNCHVKYS----------F-----DEAME-LGFTCPKCGEDLEEYDS 147 (176)
T ss_pred eeCCCCCCccc----------H-----HHHHH-hCCCCCCCCchhhhccc
Confidence 68988877664 2 22222 14679999998876663
No 418
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=69.04 E-value=75 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003678 625 LVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNL 661 (804)
Q Consensus 625 ~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~ 661 (804)
.+..+...+..+++++..+......++.++..+.+.+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666666666666655555555555443
No 419
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.90 E-value=2.6 Score=45.93 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=27.3
Q ss_pred CceeccCCCcccHHHHHHHhhc-------------------------CCCCccccCcCCCCCC
Q 003678 761 EVVITKCFHLFCNPCIQRNLEI-------------------------RHRKCPGCGTAFGQSD 798 (804)
Q Consensus 761 ~~v~~~C~H~fC~~Ci~~~~~~-------------------------~~~~CP~C~~~~~~~d 798 (804)
.+|.-.|||.||+.|...+... ....||.|-.++..+.
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 3666799999999998766432 2334899888776554
No 420
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=68.90 E-value=2.5 Score=41.86 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.5
Q ss_pred cccccccccCC
Q 003678 751 KCGVCFDRPKE 761 (804)
Q Consensus 751 ~C~iC~~~~~~ 761 (804)
-||+|+++..-
T Consensus 17 lCPVCGDkVSG 27 (475)
T KOG4218|consen 17 LCPVCGDKVSG 27 (475)
T ss_pred ccccccCcccc
Confidence 59999987643
No 421
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.77 E-value=1.3e+02 Score=29.81 Aligned_cols=103 Identities=9% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhccChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhhhhhh
Q 003678 87 ELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKE-YADQIENYISSHSVD 165 (804)
Q Consensus 87 ~~~~kl~~~~~~l~~~~~~l~~el~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~~~~-~~~e~~~~~~~~~~~ 165 (804)
.++..+..-.+.|...+..|..++..... .--.....+-.....+...++.+...+.. +..-...++.--...
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~IqdtE~------st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~ 79 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDTED------STALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKE 79 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHh------hHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 34555556666676667777777775422 22223333444456666666666655433 222223333333345
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 003678 166 QAEIQHLAGELEETMAELEESRRKLVSLKM 195 (804)
Q Consensus 166 ~~e~~~l~~~l~~l~~el~~~~~~~~~l~~ 195 (804)
...+..|..++..+.+.+......+..|..
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888777777653
No 422
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=68.72 E-value=1.3 Score=43.56 Aligned_cols=25 Identities=36% Similarity=0.849 Sum_probs=10.7
Q ss_pred cCCCcccHHHHHHHhhcCCCCccccC
Q 003678 766 KCFHLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 766 ~C~H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
.|-|+||.+|---..+ --..||.|.
T Consensus 350 ~Ck~~FCldCDv~iHe-sLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHE-SLHNCPGCE 374 (378)
T ss_pred hccceeeccchHHHHh-hhhcCCCcC
Confidence 3555555555332222 122355554
No 423
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=67.85 E-value=2.8 Score=38.07 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=21.8
Q ss_pred ccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 750 LKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
..||-|+.+|.---.+ . ....||.||.++-.-|
T Consensus 110 Y~Cp~c~~r~tf~eA~---------------~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM---------------E-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred EECCCCCcEeeHHHHH---------------H-cCCcCCCCCCEeeecc
Confidence 6799888777531111 1 2677999999876554
No 424
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=67.79 E-value=3.4 Score=47.06 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=36.1
Q ss_pred CCCcccccccccccCCceec-cCCCcccHHHHHHHhhc---CCCCccccCcCCCCCCcc
Q 003678 746 CKAILKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLEI---RHRKCPGCGTAFGQSDVR 800 (804)
Q Consensus 746 ~~~~l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~~---~~~~CP~C~~~~~~~d~~ 800 (804)
++--+.||+|+.+++-|+-- .|.|.=|+.=..-.-.. ....||+|.+.+...++.
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 34458999998887654433 67777776654433322 233599999999877653
No 425
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=67.48 E-value=2.1 Score=41.50 Aligned_cols=45 Identities=24% Similarity=0.694 Sum_probs=0.0
Q ss_pred cccccccccCCceec----------------cCCCcc-----cHHHHHHHhhcCCCCccccCcCCC
Q 003678 751 KCGVCFDRPKEVVIT----------------KCFHLF-----CNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~----------------~C~H~f-----C~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.|+||+..|.-|=++ .||-.| =..-+++........||.|++.|.
T Consensus 189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
No 426
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.36 E-value=11 Score=31.76 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=18.5
Q ss_pred Cccccccccc-ccCCcee---ccCCCcccHHHHHHH
Q 003678 748 AILKCGVCFD-RPKEVVI---TKCFHLFCNPCIQRN 779 (804)
Q Consensus 748 ~~l~C~iC~~-~~~~~v~---~~C~H~fC~~Ci~~~ 779 (804)
..-.|.||+. .|.|-+- ..|.-.||..|--+.
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv 99 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRV 99 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCee
Confidence 3468999964 4665332 234455666665543
No 427
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=67.08 E-value=3.5 Score=33.62 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=13.7
Q ss_pred CCCCccccCcCCCCCCcccc
Q 003678 783 RHRKCPGCGTAFGQSDVRFV 802 (804)
Q Consensus 783 ~~~~CP~C~~~~~~~d~~~~ 802 (804)
.++.||.||..|+.. |.++
T Consensus 41 ~h~~C~~CG~y~~~~-V~~l 59 (99)
T PRK14892 41 AIITCGNCGLYTEFE-VPSV 59 (99)
T ss_pred ceEECCCCCCccCEE-CCcc
Confidence 577899999888763 4443
No 428
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=66.92 E-value=1.7 Score=37.91 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=26.7
Q ss_pred cccccc-cc----CCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 752 CGVCFD-RP----KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 752 C~iC~~-~~----~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
||+|.. .+ ++..++-|||.|-. .+. ...||.||..|...+
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~G~~~~v-~~~------~~~C~~CGe~~~~~e 45 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYKGESITI-GVP------GWYCPACGEELLDPE 45 (127)
T ss_pred CCCCCCccceeeeecceEEEcCEEEEE-eee------eeECCCCCCEEEcHH
Confidence 999974 22 33455678888765 332 446999998876544
No 429
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.67 E-value=1.2e+02 Score=28.90 Aligned_cols=8 Identities=25% Similarity=0.247 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 003678 559 YIAEMETI 566 (804)
Q Consensus 559 l~~e~~~l 566 (804)
+..+++..
T Consensus 163 L~~el~~~ 170 (216)
T KOG1962|consen 163 LETELEKK 170 (216)
T ss_pred HHHHHHHH
Confidence 33333333
No 430
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=66.47 E-value=3.2 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.6
Q ss_pred ceeccCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 003678 762 VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQ 796 (804)
Q Consensus 762 ~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 796 (804)
|....=|-.||+.|-..........||.|...|-.
T Consensus 323 p~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCl 357 (378)
T KOG2807|consen 323 PETEYNGSRFCFACQGELLSSGRYRCESCKNVFCL 357 (378)
T ss_pred cccccCCCcceeeeccccCCCCcEEchhccceeec
Confidence 66667899999999666655445569999988864
No 431
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=66.45 E-value=2.2 Score=24.85 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=9.6
Q ss_pred CCccccCcCCCCC
Q 003678 785 RKCPGCGTAFGQS 797 (804)
Q Consensus 785 ~~CP~C~~~~~~~ 797 (804)
..||.||..|...
T Consensus 3 ~~C~~CgR~F~~~ 15 (25)
T PF13913_consen 3 VPCPICGRKFNPD 15 (25)
T ss_pred CcCCCCCCEECHH
Confidence 3588888888653
No 432
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=66.45 E-value=98 Score=29.42 Aligned_cols=10 Identities=50% Similarity=0.441 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q 003678 174 GELEETMAEL 183 (804)
Q Consensus 174 ~~l~~l~~el 183 (804)
..++.+..+|
T Consensus 132 ~~le~~~~~l 141 (292)
T KOG4005|consen 132 SELELLRQEL 141 (292)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 433
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=65.93 E-value=1.7 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=16.0
Q ss_pred CCCcccHHHHHHHhhc--CCCCccccCcCC
Q 003678 767 CFHLFCNPCIQRNLEI--RHRKCPGCGTAF 794 (804)
Q Consensus 767 C~H~fC~~Ci~~~~~~--~~~~CP~C~~~~ 794 (804)
=+..+|..|-..+.-. ....||.||.+.
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 3455566665444332 233599999763
No 434
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.57 E-value=2.8 Score=31.47 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=19.9
Q ss_pred eccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 764 ITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 764 ~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.+.|||.| +-++..-...-..||.|+.+|.
T Consensus 15 c~~cg~~~--dvvq~~~ddplt~ce~c~a~~k 44 (82)
T COG2331 15 CTECGNRF--DVVQAMTDDPLTTCEECGARLK 44 (82)
T ss_pred ecccchHH--HHHHhcccCccccChhhChHHH
Confidence 36788876 4455554444556999998764
No 435
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=65.53 E-value=3.5 Score=29.47 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=6.1
Q ss_pred cccccccccCC
Q 003678 751 KCGVCFDRPKE 761 (804)
Q Consensus 751 ~C~iC~~~~~~ 761 (804)
.||+|...|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998864
No 436
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.46 E-value=48 Score=23.79 Aligned_cols=28 Identities=21% Similarity=0.327 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEEA 548 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~~ 548 (804)
+..|..++..|..+++.+..++..+...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 437
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=64.93 E-value=1.8 Score=31.21 Aligned_cols=23 Identities=30% Similarity=0.967 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhhcCCCCccccC
Q 003678 769 HLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 769 H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
|++|..|-...+......|-.||
T Consensus 17 Ht~CrRCG~~syh~qK~~CasCG 39 (62)
T PRK04179 17 HIRCRRCGRHSYNVRKKYCAACG 39 (62)
T ss_pred cchhcccCcccccccccchhhcC
No 438
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=64.90 E-value=1.8e+02 Score=30.24 Aligned_cols=252 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHH
Q 003678 528 IIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSF 607 (804)
Q Consensus 528 l~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~ 607 (804)
|..++.+-+.....+..|..+-..+.+.++.-..+-+.++.=-..++........-+.+.+-.-.-|.....-++.++.-
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~ 206 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY 206 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHH-------------------------------------------------HHHHH
Q 003678 608 LLSEKQ-----ALARQLQQINALVES-------------------------------------------------AKLRI 633 (804)
Q Consensus 608 l~~e~~-----~l~~~l~~~~~~~~~-------------------------------------------------~~~~~ 633 (804)
+...+. .-..+++.++..++. ..+.+
T Consensus 207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l 286 (558)
T PF15358_consen 207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL 286 (558)
T ss_pred HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 634 LHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKL 713 (804)
Q Consensus 634 ~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l 713 (804)
...-.-+.++...+..+...+.+-.-.....-.-+..+--.+..+--+-+..+.+-......+.++..+.+++-....+.
T Consensus 287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers 366 (558)
T PF15358_consen 287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS 366 (558)
T ss_pred cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCC------------CcccccccccccCCceeccCCCcccHHHHHHHhh
Q 003678 714 EEELMEVNNKVAELTSETGEAAIQKLQDEIKDCK------------AILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLE 781 (804)
Q Consensus 714 e~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~------------~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~ 781 (804)
-..+..++..++-+.... ..++.+-.++...+ ....|.-| -.||..+-..-++..+.
T Consensus 367 avs~asLrseLeglgpvK--PilEel~Rq~~~~rrg~d~~~~ldr~~~gsCarC---------~sqgqqlstesLqqlle 435 (558)
T PF15358_consen 367 AVSVASLRSELEGLGPVK--PILEELGRQLQNSRRGPDLSMNLDRSPQGSCARC---------ASQGQQLSTESLQQLLE 435 (558)
T ss_pred HhHHHHHHHHhhcccCcc--hHHHHHHHHHHhhccCCccccCCCcCCCCchHhH---------hhhhhhcCHHHHHHHHH
Q ss_pred c-------------CCCCcccc
Q 003678 782 I-------------RHRKCPGC 790 (804)
Q Consensus 782 ~-------------~~~~CP~C 790 (804)
. -...||.|
T Consensus 436 rAltplvdevkqr~l~pacpsc 457 (558)
T PF15358_consen 436 RALTPLVDEVKQRGLPPACPSC 457 (558)
T ss_pred HHhHHHHHHHHhcCCCCCChHH
No 439
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=64.74 E-value=3.6 Score=26.65 Aligned_cols=36 Identities=25% Similarity=0.676 Sum_probs=0.0
Q ss_pred cccccccccCC--ceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 751 KCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 751 ~C~iC~~~~~~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
.|+.|...+.. .++..=|+.|-..|+. |..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~---------C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFK---------CSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCC---------CcccCCcCc
No 440
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=64.74 E-value=2.5 Score=31.43 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred hHHhHhcCCCccccc--ccccccCC-------ceec-cCCCcccHHHHHHH
Q 003678 739 LQDEIKDCKAILKCG--VCFDRPKE-------VVIT-KCFHLFCNPCIQRN 779 (804)
Q Consensus 739 l~~e~~~~~~~l~C~--iC~~~~~~-------~v~~-~C~H~fC~~Ci~~~ 779 (804)
+...++.-.....|| -|...+.. .|.- .|||.||+.|...|
T Consensus 8 ~~~~i~~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 8 LESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred HHHHHhcCCCccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
No 441
>PF13166 AAA_13: AAA domain
Probab=64.70 E-value=2.9e+02 Score=32.53 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003678 508 KAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAER 587 (804)
Q Consensus 508 ~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l 587 (804)
.....-..-...........+......+......+...-..+................+...+..+...+..+...+...
T Consensus 269 ~~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K 348 (712)
T PF13166_consen 269 ERKERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKK 348 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003678 588 DDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWE 667 (804)
Q Consensus 588 ~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 667 (804)
...... ..+.......+..+...+..+...+......+..+......+...+... .+......+......+..+...
T Consensus 349 ~~~~~~-~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~ 425 (712)
T PF13166_consen 349 IKNPSS-PIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH--LIAKLKEDIEEYQKEIKELEKE 425 (712)
T ss_pred Hhcccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 668 LADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKL 713 (804)
Q Consensus 668 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l 713 (804)
+..+...+..+...+.....++..+...+.....-.+.+...+..+
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 426 INSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 442
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=64.67 E-value=2.6 Score=32.15 Aligned_cols=25 Identities=32% Similarity=0.891 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhhcCCCCccccCcC
Q 003678 769 HLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 769 H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
|+.|..|-...+..-...|..||-|
T Consensus 16 htlC~RCG~~syH~QKstC~~CGYp 40 (92)
T KOG3475|consen 16 HTLCRRCGRRSYHIQKSTCSSCGYP 40 (92)
T ss_pred hHHHHHhCchhhhhhcccccccCCc
No 443
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.49 E-value=2.1 Score=28.71 Aligned_cols=9 Identities=44% Similarity=1.250 Sum_probs=0.0
Q ss_pred ccccCcCCC
Q 003678 787 CPGCGTAFG 795 (804)
Q Consensus 787 CP~C~~~~~ 795 (804)
||.|+.||+
T Consensus 15 CpvCqRPFs 23 (54)
T COG4338 15 CPVCQRPFS 23 (54)
T ss_pred hhhhcCchH
No 444
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.32 E-value=40 Score=24.06 Aligned_cols=51 Identities=12% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003678 520 RLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAF 570 (804)
Q Consensus 520 ~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~ 570 (804)
++..++.++..+...++.+++++.++...+...++.+..+..-++...+.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 445
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=64.00 E-value=1.4 Score=33.59 Aligned_cols=22 Identities=32% Similarity=0.996 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCCCCccccCcC
Q 003678 772 CNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 772 C~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
|..|..........+||.||.+
T Consensus 12 C~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 12 CHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp -SSS--EES-SS--S-SSS--S
T ss_pred ccccccCcCCCCceeCcccCCC
No 446
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=63.79 E-value=3.3 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=0.0
Q ss_pred ccccccccCCceeccCCC-------cccHHHHHHHhhc---CCCCccccCcCCCCC
Q 003678 752 CGVCFDRPKEVVITKCFH-------LFCNPCIQRNLEI---RHRKCPGCGTAFGQS 797 (804)
Q Consensus 752 C~iC~~~~~~~v~~~C~H-------~fC~~Ci~~~~~~---~~~~CP~C~~~~~~~ 797 (804)
|--|++.+.+..+.|=|| +.|..|....--. ....||.|+.||-+.
T Consensus 38 Cy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 38 CYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred HHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
No 447
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.42 E-value=2.3 Score=35.93 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCCCC--ccccCcCC
Q 003678 772 CNPCIQRNLEIRHRK--CPGCGTAF 794 (804)
Q Consensus 772 C~~Ci~~~~~~~~~~--CP~C~~~~ 794 (804)
|..|-.++|..+..- ||.||..|
T Consensus 12 Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 12 CPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred CCCcCccccccCCCCccCCCcCCcc
No 448
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=63.42 E-value=4.2 Score=37.70 Aligned_cols=49 Identities=20% Similarity=0.427 Sum_probs=0.0
Q ss_pred hHHHHhHHhHhcCCC--cccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 003678 734 AAIQKLQDEIKDCKA--ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 734 ~~~~~l~~e~~~~~~--~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d 798 (804)
...+.+...++.-.. -+.||-|+.+|.---.+ .....||.||.++-.-|
T Consensus 100 ~~~~klk~~l~~e~~~~~Y~Cp~C~~rytf~eA~----------------~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 100 EELKKLKEQLEEEENNMFFFCPNCHIRFTFDEAM----------------EYGFRCPQCGEMLEEYD 150 (178)
T ss_pred HHHHHHHHHhhhccCCCEEECCCCCcEEeHHHHh----------------hcCCcCCCCCCCCeecc
No 449
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.40 E-value=2.3e+02 Score=31.00 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q 003678 575 TQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVES-------------------------- 628 (804)
Q Consensus 575 ~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~-------------------------- 628 (804)
.....+.+++....++|.+|..+...+-=+..-..-.++.-...+..+...+..
T Consensus 302 es~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~ 381 (518)
T PF10212_consen 302 ESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQ 381 (518)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccccccccccccc
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003678 629 ------------------------------------AKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAE 672 (804)
Q Consensus 629 ------------------------------------~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~ 672 (804)
+..+|.++...+............+...+...+.........+.
T Consensus 382 ~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ 461 (518)
T PF10212_consen 382 SVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLE 461 (518)
T ss_pred ccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 673 KELKWLKSAVTSSDKEY----EQIQRKTEDMRKELENERNERKKLEEELMEVN 721 (804)
Q Consensus 673 ~~~~~l~~~l~~~~~~l----~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~ 721 (804)
.++......+..++.++ ...+.++..+...+-.+...+..-.++|+.++
T Consensus 462 eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 462 EELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 450
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.00 E-value=63 Score=24.49 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 003678 635 HAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSD 686 (804)
Q Consensus 635 ~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 686 (804)
.++..+..++..+.-.+..+..++..+......+..++..+..+...+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 451
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=62.92 E-value=2.6 Score=37.34 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=0.0
Q ss_pred eeccCCCcccHHHHHHHhhcCCCCccccCcC
Q 003678 763 VITKCFHLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 763 v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
|+..|||..+..=-. +-..||.|+..
T Consensus 114 ~C~~Cg~~~~~~~~~-----~l~~Cp~C~~~ 139 (146)
T PF07295_consen 114 VCENCGHEVELTHPE-----RLPPCPKCGHT 139 (146)
T ss_pred ecccCCCEEEecCCC-----cCCCCCCCCCC
No 452
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.71 E-value=4.1 Score=44.84 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=0.0
Q ss_pred cccccccccCC----ceeccCCCcccHHHHHHHhhcCCCCccccC
Q 003678 751 KCGVCFDRPKE----VVITKCFHLFCNPCIQRNLEIRHRKCPGCG 791 (804)
Q Consensus 751 ~C~iC~~~~~~----~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~ 791 (804)
.|-+|...-.. +.++.|+-.||..|-..+... ||.|+
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~~----~~vC~ 696 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYASI----SEVCG 696 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhhhcc----CcccC
No 453
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=62.51 E-value=2.3 Score=41.79 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhhcCCCC---ccccCcCCCCC
Q 003678 768 FHLFCNPCIQRNLEIRHRK---CPGCGTAFGQS 797 (804)
Q Consensus 768 ~H~fC~~Ci~~~~~~~~~~---CP~C~~~~~~~ 797 (804)
.|.||..|..+..-..+-. ||.||..+-+.
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR 142 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHFPR 142 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccCCC
No 454
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.45 E-value=50 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 523 AAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 574 (804)
Q Consensus 523 ~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~ 574 (804)
.++..+.+|+.++.-....+..|...+......+..|...+..+...+.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 455
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.39 E-value=3e+02 Score=31.87 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---hHHHH
Q 003678 516 ACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQ--HLLQQVA---ERDDL 590 (804)
Q Consensus 516 ~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~--~l~~~~~---~l~~~ 590 (804)
....-...+...+..++..+..+...+......+...+........-+..+............ ....... ..-..
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 176 (670)
T KOG0239|consen 97 VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKE 176 (670)
T ss_pred hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003678 591 NIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRIL---HAEEQMKACLTEALRYNSEDRHLAVNLETTKWE 667 (804)
Q Consensus 591 ~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~---~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 667 (804)
...+..+...+...+.............+.........+...+. .+...+..+..........+..++..+..++..
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~ 256 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAE 256 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003678 668 LADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENER---NERKKLEEELMEVNNKV 724 (804)
Q Consensus 668 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~---~~~~~le~el~~l~~~l 724 (804)
...+......+...+...-..+..+...+......+.+.. ...+++-.++..++..+
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 257 LKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
No 456
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=62.24 E-value=2.1 Score=38.63 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCCCCccccCcC
Q 003678 772 CNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 772 C~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
|..|--.+.....-.||+||.|
T Consensus 137 C~vCGy~~~ge~P~~CPiCga~ 158 (166)
T COG1592 137 CPVCGYTHEGEAPEVCPICGAP 158 (166)
T ss_pred cCCCCCcccCCCCCcCCCCCCh
No 457
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=62.23 E-value=1.1 Score=36.92 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=0.0
Q ss_pred cccccccccC----CceeccCCCcc--cHHHHHHHhhcCCCCccccCcCC
Q 003678 751 KCGVCFDRPK----EVVITKCFHLF--CNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 751 ~C~iC~~~~~----~~v~~~C~H~f--C~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
.|++|...+. +...-+=||+| |..=.........+.||.|+..+
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
No 458
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.06 E-value=1.6e+02 Score=28.58 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 003678 508 KAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFE-----DMQTQNQHLLQ 582 (804)
Q Consensus 508 ~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~-----~l~~~~~~l~~ 582 (804)
..++.....+++-...++..|.++...+..++..+.........++.++..+...+..+..... .-..--.....
T Consensus 12 a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~ 91 (221)
T PF04012_consen 12 ANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQ 91 (221)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003678 583 QVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLE 662 (804)
Q Consensus 583 ~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~ 662 (804)
....++..+..+..........+..+...+..+...+..++.....+..... .......+...+.... .......++
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~~~~~~~~~--~~~a~~~~e 168 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKVNEALASFS--VSSAMDSFE 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCC--ccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003678 663 TTKWELADAEKELKWLKS 680 (804)
Q Consensus 663 ~~~~~~~~l~~~~~~l~~ 680 (804)
.++.++..++........
T Consensus 169 r~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 169 RMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
No 459
>PF14992 TMCO5: TMCO5 family
Probab=61.91 E-value=1.8e+02 Score=29.10 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 577 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRH 656 (804)
Q Consensus 577 ~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~ 656 (804)
+..+......+++.+..+...+......+.++.+++..+...+..- +....-+..-+..+..+....+.++..-..
T Consensus 6 n~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~ 81 (280)
T PF14992_consen 6 NMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEH 81 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHh
Q ss_pred HHHhHHHHHHHH------------------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 657 LAVNLETTKWEL------------------ADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELM 718 (804)
Q Consensus 657 ~~~~~~~~~~~~------------------~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~ 718 (804)
+...+..++.++ ...+..+..+.......+.++..+.........-.++....+.++++.+.
T Consensus 82 l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~ 161 (280)
T PF14992_consen 82 LSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLR 161 (280)
T ss_pred hhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 003678 719 EVNNKVAEL 727 (804)
Q Consensus 719 ~l~~~l~~l 727 (804)
.+....+-+
T Consensus 162 rmE~ekE~~ 170 (280)
T PF14992_consen 162 RMEEEKEML 170 (280)
T ss_pred HHHHHHHHH
No 460
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.53 E-value=2.3e+02 Score=30.21 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred hcCCCCCcccccCCCCcCCCCCCCCCchhHHHHHHhhhccccCCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003678 22 RAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRV 101 (804)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kl~~~~~~l~~ 101 (804)
|.+.+.++.+.....|+++++.|..+...+.-.. ...+.+++.+-...-......+..--+.+.+
T Consensus 180 cSS~tS~S~~~~s~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~ 244 (395)
T PF10267_consen 180 CSSVTSGSIDANSNSSNSGGSSQGSSVSSQQNLG---------------LQKILEELREIKESQSRLEESIEKLKEQYQR 244 (395)
T ss_pred cccCCCCCCCCCCCCCCCCcccccccccccccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHhccCh-hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhhhhhHHHHHHHH
Q 003678 102 KTKSIAEAFHEKLSA-EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLK-HKEYADQIENYISSHSVDQAEIQHLA 173 (804)
Q Consensus 102 ~~~~l~~el~~~~~~-~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~-~~~~~~e~~~~~~~~~~~~~e~~~l~ 173 (804)
.+.-+...|.+...- +.+...+....+....|+.+|+..+...+.+ -....+....+.+.+...++.+..++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 461
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=61.38 E-value=3.2 Score=24.35 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCccccCcCCC
Q 003678 776 IQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 776 i~~~~~~~~~~CP~C~~~~~ 795 (804)
+......+.-.||.|+..|.
T Consensus 6 ~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 6 MRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHSSSSSEEESSSSEEES
T ss_pred hhhcCCCCCCCCCCCcCeeC
No 462
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=61.31 E-value=4.5 Score=37.97 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=0.0
Q ss_pred ccccccccccCCceec-cCCCcccHHHHHHHhh--cCCCCccc--cCcCCCCCCc
Q 003678 750 LKCGVCFDRPKEVVIT-KCFHLFCNPCIQRNLE--IRHRKCPG--CGTAFGQSDV 799 (804)
Q Consensus 750 l~C~iC~~~~~~~v~~-~C~H~fC~~Ci~~~~~--~~~~~CP~--C~~~~~~~d~ 799 (804)
++|||-..++..|++. +|.|.|=.+=|...+. . .|-||. |.......++
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~-trvcp~~~Csq~~~~~~~ 243 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVEC-TRVCPRLICSQKEVVDPY 243 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCc-eeecchhhcchheeccch
No 463
>PRK00420 hypothetical protein; Validated
Probab=61.23 E-value=1.8 Score=36.08 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred cHHHHHHHhh--cCCCCccccCcCCCCCC
Q 003678 772 CNPCIQRNLE--IRHRKCPGCGTAFGQSD 798 (804)
Q Consensus 772 C~~Ci~~~~~--~~~~~CP~C~~~~~~~d 798 (804)
|..|-...+. .+...||.||..+...+
T Consensus 26 CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 26 CPVCGLPLFELKDGEVVCPVHGKVYIVKS 54 (112)
T ss_pred CCCCCCcceecCCCceECCCCCCeeeecc
No 464
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.20 E-value=68 Score=34.72 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 507 VKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQN 577 (804)
Q Consensus 507 ~~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~ 577 (804)
+...........-++..++...++++.+++.+...+++++..+...+.++..|+.+++..+.+++++...+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
No 465
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=61.13 E-value=2.6 Score=23.64 Aligned_cols=9 Identities=56% Similarity=1.527 Sum_probs=0.0
Q ss_pred ccccCcCCC
Q 003678 787 CPGCGTAFG 795 (804)
Q Consensus 787 CP~C~~~~~ 795 (804)
||.|+..|.
T Consensus 3 C~~C~~~f~ 11 (23)
T PF00096_consen 3 CPICGKSFS 11 (23)
T ss_dssp ETTTTEEES
T ss_pred CCCCCCccC
No 466
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=60.96 E-value=2.3e+02 Score=30.06 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 003678 521 LSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVK 600 (804)
Q Consensus 521 l~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~ 600 (804)
++.+..++..+..+.+..+.=+..|+.+-... ....+..+.+.+...-..+-.++..+..+-..+...+.++..+..+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 601 TKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEA 647 (804)
Q Consensus 601 ~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~ 647 (804)
+.++......+......++-..+..+..+...+.-...+++.+....
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
No 467
>PRK00420 hypothetical protein; Validated
Probab=60.95 E-value=3.1 Score=34.79 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=0.0
Q ss_pred cccccccccCCceeccCCCcccHHH
Q 003678 751 KCGVCFDRPKEVVITKCFHLFCNPC 775 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~fC~~C 775 (804)
.||+|+.++.. ++=|++||-.|
T Consensus 25 ~CP~Cg~pLf~---lk~g~~~Cp~C 46 (112)
T PRK00420 25 HCPVCGLPLFE---LKDGEVVCPVH 46 (112)
T ss_pred CCCCCCCccee---cCCCceECCCC
No 468
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=60.85 E-value=3.6 Score=31.23 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=0.0
Q ss_pred HhcCCCcccccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 743 IKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 743 ~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
++.......||.|+...+. ....+...||.||..+.
T Consensus 22 v~~~~TSq~C~~CG~~~~~-----------------~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 22 VDEAYTSQTCPRCGHRNKK-----------------RRSGRVFTCPNCGFEMD 57 (69)
T ss_pred ECCCCCccCccCccccccc-----------------ccccceEEcCCCCCEEC
No 469
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.78 E-value=2.4e+02 Score=30.24 Aligned_cols=162 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHhHhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 513 AEAACQQRLSAAEAEIIE----------------LVAKLDASERDVMELE-EAMKSKDREAEAYIAEMETIGQAFEDMQT 575 (804)
Q Consensus 513 ~~~~~~~~l~~le~el~~----------------l~~~l~~~~~~~~~l~-~~l~~~~~e~~~l~~e~~~l~~~~~~l~~ 575 (804)
....+..+|..++.-+.. +-..++.+..++.-|. ..+......+..+..+++.+...-....
T Consensus 210 ~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~- 288 (388)
T PF04912_consen 210 RAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAK- 288 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccccc-
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 576 QNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDR 655 (804)
Q Consensus 576 ~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~ 655 (804)
........|.++=+.+..+..=...+-.-+.+|.. +..+..+...+...+..+......+...+..+..-+..++..+.
T Consensus 289 ~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t-L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 289 EDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT-LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 003678 656 HLAVNLETTKWELADAEKELKWLK 679 (804)
Q Consensus 656 ~~~~~~~~~~~~~~~l~~~~~~l~ 679 (804)
..+..+...+..++..+..|+
T Consensus 368 ---~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 368 ---ENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred ---HHHHHHHHHHHHHHHHHhccC
No 470
>PF14992 TMCO5: TMCO5 family
Probab=60.51 E-value=1.9e+02 Score=28.93 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 566 IGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLT 645 (804)
Q Consensus 566 l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~ 645 (804)
+......+...+..+...+...+..+..|..++.+.......- +....-...-+..+..+......++.....+..
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~ 84 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEHLSK 84 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhh
Q ss_pred HHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 646 EALRYNSEDR-----------HLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLE 714 (804)
Q Consensus 646 ~~~~~~~e~~-----------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le 714 (804)
.+..+..++. .+...+...+..+..+......+..++..+.........-..+....+..+...+++++
T Consensus 85 ~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE 164 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRME 164 (280)
T ss_pred hhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 003678 715 EELMEV 720 (804)
Q Consensus 715 ~el~~l 720 (804)
++.+.+
T Consensus 165 ~ekE~~ 170 (280)
T PF14992_consen 165 EEKEML 170 (280)
T ss_pred HHHHHH
No 471
>PRK00295 hypothetical protein; Provisional
Probab=60.23 E-value=72 Score=24.11 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 524 AEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 574 (804)
Q Consensus 524 le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~ 574 (804)
++..+.+|+.++.-....+..|...+......+..+...+..+...+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 472
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.13 E-value=3.2e+02 Score=31.47 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HhhHHHHHHHHHhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 519 QRLSAAEAEIIELVAKLDAS-ERDVMELEEAMKSKDREA-----------------EAYIAEMETIGQAFEDMQTQNQHL 580 (804)
Q Consensus 519 ~~l~~le~el~~l~~~l~~~-~~~~~~l~~~l~~~~~e~-----------------~~l~~e~~~l~~~~~~l~~~~~~l 580 (804)
.++..+.-=+.+|+.-+.+. ..++..|-.++...-.-+ .-|+.+...+..++.-+..++.+.
T Consensus 334 ~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 334 EKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 581 LQQV-----AERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDR 655 (804)
Q Consensus 581 ~~~~-----~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~ 655 (804)
...- .+..-++..|+.-...+...+.......+.+...-..+-.-++.++.+-..+...+.+-..++......+.
T Consensus 414 e~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d 493 (861)
T PF15254_consen 414 EKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFD 493 (861)
T ss_pred HhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 656 HLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKV 724 (804)
Q Consensus 656 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~le~el~~l~~~l 724 (804)
.+...++-++.+.-..+..++-.++..+++-.-+.-.+..-..++.+++.-.+.++.-+..+-..+
T Consensus 494 ---~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 494 ---IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 473
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.07 E-value=71 Score=23.94 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhH--HHHHHHHhHHHHHHHHHHHHHHHHH
Q 003678 246 DRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLY--NLVNDQLQHWNVEVERYKALTDSLL 309 (804)
Q Consensus 246 ~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~~~~~~~--~~l~~~l~~l~~el~~~~~~~~~l~ 309 (804)
+...++.++.+++..+...+..+...|.+..+....+.- ..-...+..+...+..+...+..+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 474
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=59.79 E-value=8.6 Score=33.43 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHhHHhHhcCCCccccccccccc-CCceeccCCCcccHHHHHHHhhcCCCCccccCcCC
Q 003678 735 AIQKLQDEIKDCKAILKCGVCFDRP-KEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAF 794 (804)
Q Consensus 735 ~~~~l~~e~~~~~~~l~C~iC~~~~-~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~ 794 (804)
..+..--.+........||.|.... ...-...+| ..|.+ ||.|+..|
T Consensus 16 ~~~~~~~~~~~~~~~~~cP~C~s~~~~k~g~~~~~------------~qRyr-C~~C~~tf 63 (129)
T COG3677 16 ALADAAYAIRMQITKVNCPRCKSSNVVKIGGIRRG------------HQRYK-CKSCGSTF 63 (129)
T ss_pred HHHHHHHHHhhhcccCcCCCCCccceeeECCcccc------------ccccc-cCCcCcce
No 475
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=59.78 E-value=24 Score=32.85 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--hHHHHhHHhHhcCCCcccccccccccCCceeccCCCcccH-HHHH
Q 003678 701 KELENERNERKKLEEELMEVNNKVAELTSETGE--AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCN-PCIQ 777 (804)
Q Consensus 701 ~~l~~~~~~~~~le~el~~l~~~l~~l~~~~~~--~~~~~l~~e~~~~~~~l~C~iC~~~~~~~v~~~C~H~fC~-~Ci~ 777 (804)
.+.............+-..++..-..+++...- .........|......+.|..|+. ..+.-..|||-|=. ..-.
T Consensus 37 ~~~k~~k~~k~~~k~eR~~~~~rk~~lk~~~~~~~~aq~afn~~IR~RD~~~~CiSCG~--~~~~~~dagHy~s~g~~~~ 114 (189)
T PF05766_consen 37 AEKKREKKRKKAEKEERAELKARKEALKPRSDWLKEAQKAFNKYIRLRDAGKPCISCGR--KHGGQWDAGHYRSRGAAPE 114 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCcccCCC--cCCCCcccccccccccCcc
Q ss_pred HHhhcCCCC--ccccCcCCCCC
Q 003678 778 RNLEIRHRK--CPGCGTAFGQS 797 (804)
Q Consensus 778 ~~~~~~~~~--CP~C~~~~~~~ 797 (804)
.++...+-. |..|+..++.+
T Consensus 115 lRF~~~N~~~qC~~CN~~~sgn 136 (189)
T PF05766_consen 115 LRFNEDNIHAQCKHCNRHLSGN 136 (189)
T ss_pred cccChhhHhHcCCccccccccC
No 476
>PRK03922 hypothetical protein; Provisional
Probab=59.74 E-value=4.8 Score=32.80 Aligned_cols=14 Identities=36% Similarity=0.914 Sum_probs=0.0
Q ss_pred CCCCccccCcCCCC
Q 003678 783 RHRKCPGCGTAFGQ 796 (804)
Q Consensus 783 ~~~~CP~C~~~~~~ 796 (804)
+.+.||.||.+|..
T Consensus 48 G~~~cP~cge~~~~ 61 (113)
T PRK03922 48 GLTICPKCGEPFDS 61 (113)
T ss_pred CcccCCCCCCcCCc
No 477
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.10 E-value=2.5e+02 Score=29.91 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 549 MKSKDREAEAYIAEMETIGQAFEDMQTQNQ-HLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVE 627 (804)
Q Consensus 549 l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~-~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~ 627 (804)
+.....++..++.....+...++.++.+.. +...-...++++-.+...=-..++........++..++.++..+...++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Q 003678 628 SAKLR-ILHAEEQMKACLTEALRYN 651 (804)
Q Consensus 628 ~~~~~-~~~le~~~~~l~~~~~~~~ 651 (804)
....+ ..++.+.+..++..+.+++
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
No 478
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=59.03 E-value=4.9 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.850 Sum_probs=0.0
Q ss_pred CcccccccccccCCceeccC
Q 003678 748 AILKCGVCFDRPKEVVITKC 767 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C 767 (804)
....||||++...+.|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
No 479
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.91 E-value=64 Score=23.07 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 541 DVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQ 582 (804)
Q Consensus 541 ~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~ 582 (804)
++.+++..+..+...+..++.+++.+...++.+......+..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PHA00733 hypothetical protein
Probab=58.74 E-value=6 Score=34.40 Aligned_cols=49 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred CcccccccccccCCceec--c-------------------CCCcc-cHHHHHHHhh--cCCCCccccCcCCCC
Q 003678 748 AILKCGVCFDRPKEVVIT--K-------------------CFHLF-CNPCIQRNLE--IRHRKCPGCGTAFGQ 796 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~--~-------------------C~H~f-C~~Ci~~~~~--~~~~~CP~C~~~~~~ 796 (804)
..+.|.+|...|.++..+ . ||..| ...=+..... .....||.|+..|..
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~ 111 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRN 111 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCC
No 481
>PLN02248 cellulose synthase-like protein
Probab=58.73 E-value=6.5 Score=46.44 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHhhcCCCCccccCcCCCCCCc
Q 003678 767 CFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV 799 (804)
Q Consensus 767 C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~ 799 (804)
|++..|.+|.-....+ ...||.|..++...|+
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 150 CGFKICRDCYIDAVKS-GGICPGCKEPYKVTDL 181 (1135)
T ss_pred ccchhHHhHhhhhhhc-CCCCCCCccccccccc
No 482
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.30 E-value=1.3e+02 Score=26.55 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 003678 588 DDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRIL--------------------------------- 634 (804)
Q Consensus 588 ~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~--------------------------------- 634 (804)
+..+..+......+...+..+...+..+...+..+...++.+..--.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 635 ------HAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTS 684 (804)
Q Consensus 635 ------~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 684 (804)
.+.+.+..+...+..+...+..+...+..+...+..+...+..+..+...
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 140 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 483
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.24 E-value=6.6 Score=39.86 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred cccccccccCCceeccCCCcccHHHHHHHhhcCCCCccccCcCCCCCCcccccC
Q 003678 751 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 751 ~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 804 (804)
.|.+-+.+|.+||++.=|-+|-..-|-.|+. .+.+-|+-|.+....|+.++-|
T Consensus 42 hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIkL~F 94 (518)
T KOG0883|consen 42 HCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIKLKF 94 (518)
T ss_pred hceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCccccccceeeee
No 484
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=58.24 E-value=1.8e+02 Score=28.15 Aligned_cols=169 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred hcCCCCCcccccCCCCcCCCCCCCCCchhHHHHHHhhhccccCCCCccchhHHHHHHHh-------hHHHHHHHHHHHHH
Q 003678 22 RAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALAS-------RHSSARELMKFIEE 94 (804)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~kl~~ 94 (804)
+++++++-++.+.++|+|.++.-.+|.-..-|.|.- +..+-.-+..-+=.+.. ..+..+.++.+...
T Consensus 38 ~~~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~------~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~a 111 (221)
T PF05700_consen 38 RYRPTKNYLPHLPPPPEPPFSAFETPLLQAELERVA------SGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAYA 111 (221)
T ss_pred hcCCCchhHHhCCCCCCCCcccccchhHHHHHHHHH------cCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHhccCh---hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHhhhhhhHH
Q 003678 95 VIDAQRVKTKSIAEAFHEKLSA---EDAIIQLSKIDDMMKEEAKNLHEVMEIIHLK----HKEYADQIENYISSHSVDQA 167 (804)
Q Consensus 95 ~~~~l~~~~~~l~~el~~~~~~---~~~~~~l~~~~~~~~~e~~~l~~~~~~l~~~----~~~~~~e~~~~~~~~~~~~~ 167 (804)
+.+.+.-++.-| +|-..-++ -.-..+++.....++.++..++..++.+... ...+..++..++......-.
T Consensus 112 ~lehq~~R~~NL--eLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~ 189 (221)
T PF05700_consen 112 QLEHQRLRLENL--ELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVS 189 (221)
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 003678 168 EIQHLAGELEETMAELEESRRKLVSLKMQKD 198 (804)
Q Consensus 168 e~~~l~~~l~~l~~el~~~~~~~~~l~~~~~ 198 (804)
..-.++.....+..++..++.+....+....
T Consensus 190 kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 190 KNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 485
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=58.13 E-value=3.9 Score=39.69 Aligned_cols=39 Identities=28% Similarity=0.625 Sum_probs=0.0
Q ss_pred CcccccccccccCCceeccCCCcccHHHHHHH-hhcCCCC-ccccCcCCC
Q 003678 748 AILKCGVCFDRPKEVVITKCFHLFCNPCIQRN-LEIRHRK-CPGCGTAFG 795 (804)
Q Consensus 748 ~~l~C~iC~~~~~~~v~~~C~H~fC~~Ci~~~-~~~~~~~-CP~C~~~~~ 795 (804)
....|+-|...- -++.|| |+..- +.+...+ ||.|+.+|.
T Consensus 305 ~t~~~~r~~k~n---fc~ncG------~~~t~~~~ng~a~fcp~cgq~~~ 345 (345)
T COG4260 305 ATWPCARCAKLN---FCLNCG------CGTTADFDNGKAKFCPECGQGFV 345 (345)
T ss_pred ccCcchhccccc---cccccC------cccccCCccchhhhChhhcCCCC
No 486
>PRK04325 hypothetical protein; Provisional
Probab=58.10 E-value=85 Score=24.22 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003678 522 SAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDM 573 (804)
Q Consensus 522 ~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l 573 (804)
..++..+.+|+.++.-....|..|...+......+..+...+..+...+.++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.82 E-value=3.6 Score=42.18 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=0.0
Q ss_pred CCcc-cHHHH--HHHhhcCCCCccccCcCCCCCCcccccC
Q 003678 768 FHLF-CNPCI--QRNLEIRHRKCPGCGTAFGQSDVRFVKI 804 (804)
Q Consensus 768 ~H~f-C~~Ci--~~~~~~~~~~CP~C~~~~~~~d~~~~~~ 804 (804)
||++ |..|. .........+||.||..|.. .-|+|+
T Consensus 238 g~~~~c~~cg~~~~~~~~~~~~c~~Cg~~~~~--~GPlW~ 275 (380)
T COG1867 238 GYIYHCSRCGEIVGSFREVDEKCPHCGGKVHL--AGPLWL 275 (380)
T ss_pred CcEEEcccccceecccccccccCCccccccee--ccCccc
No 488
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.65 E-value=1.9e+02 Score=28.05 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 003678 565 TIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLR-----ILHAEEQ 639 (804)
Q Consensus 565 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~-----~~~le~~ 639 (804)
.+...++.+.+-..-+..-+.++++.+..........-.....+...+......+..+.......... ....-..
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~ 93 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIE 93 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 003678 640 MKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRK-----------TEDMRKELENERN 708 (804)
Q Consensus 640 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~-----------~~~~~~~l~~~~~ 708 (804)
...+...+..+...+..+...+..++..+..++..+..++..-..+-......... .......++.++.
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ 173 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYER 173 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--------HHHHHHHhhhhhhH-hHHHHhHHhHhc
Q 003678 709 ERKKLEEELME--------VNNKVAELTSETGE-AAIQKLQDEIKD 745 (804)
Q Consensus 709 ~~~~le~el~~--------l~~~l~~l~~~~~~-~~~~~l~~e~~~ 745 (804)
++..++..... +..++..+...... ..+..|+.....
T Consensus 174 ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~~ 219 (219)
T TIGR02977 174 RVDELEAQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMKK 219 (219)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhCC
No 489
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.54 E-value=3.8e+02 Score=31.60 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHH
Q 003678 529 IELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFE--DMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQS 606 (804)
Q Consensus 529 ~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~--~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~ 606 (804)
..+..+.......+.=+.+++..++.++...+..+........ ++..+......++.+++.++..+......+...+.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~ 335 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYK 335 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003678 607 FLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAE 672 (804)
Q Consensus 607 ~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~ 672 (804)
.-.-.+..+..++..+..++..+...+ ..+...+.++..+..+....+.-...+-.+..++.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~----~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRV----SAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=21 Score=37.01 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCCcccccccccccCC------ceeccCCCcccHHH
Q 003678 704 ENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKE------VVITKCFHLFCNPC 775 (804)
Q Consensus 704 ~~~~~~~~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~------~v~~~C~H~fC~~C 775 (804)
..++..+.-.+.+-.+...--.+.+.......+.....+---..+.-.||-|...... .+.+.|||.||.-|
T Consensus 323 ~~~~l~~~~~~~d~a~k~ele~Ryg~rvve~~vn~~lsekwl~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c 400 (445)
T KOG1814|consen 323 KLIELYLEYLEADEARKRELEKRYGKRVVEELVNDFLSEKWLESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWIC 400 (445)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCcccceeecCCCccceeeccccccceeeh
No 491
>PRK00846 hypothetical protein; Provisional
Probab=57.25 E-value=90 Score=24.25 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 522 SAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQ 574 (804)
Q Consensus 522 ~~le~el~~l~~~l~~~~~~~~~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~ 574 (804)
..++..+..|..++.-....|..|...+......+..+...+..+...+.++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=57.16 E-value=1.7e+02 Score=27.35 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 506 RVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMEL---------EEAMKSKDREAEAYIAEMETIGQAFEDMQTQ 576 (804)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~le~el~~l~~~l~~~~~~~~~l---------~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~ 576 (804)
++.+..+.......-+..+...+..++....++...+..- ...-......+..+...++.-...-+.+..-
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 577 NQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQ----ALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNS 652 (804)
Q Consensus 577 ~~~l~~~~~~l~~~~~~l~~e~~~~~~~~~~l~~e~~----~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~ 652 (804)
+.-+..++......+..|..++.++......+..++. .+..+-..+..-+..-...+-.+=..+..+...+..+..
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRT 162 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 003678 653 EDRHLAVNLETTKWELADAEKEL 675 (804)
Q Consensus 653 e~~~~~~~~~~~~~~~~~l~~~~ 675 (804)
... ..+...+..+...-..+
T Consensus 163 ~Te---rdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 163 ATE---RDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHH---hhHHHHHHHHHHHHccC
No 493
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=57.07 E-value=7.2 Score=28.50 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=0.0
Q ss_pred CCccccCcCCC---CCCcccc
Q 003678 785 RKCPGCGTAFG---QSDVRFV 802 (804)
Q Consensus 785 ~~CP~C~~~~~---~~d~~~~ 802 (804)
.+||+|++++. .+.++|+
T Consensus 7 v~CP~C~k~~~w~~~~~~rPF 27 (62)
T PRK00418 7 VNCPTCGKPVEWGEISPFRPF 27 (62)
T ss_pred ccCCCCCCcccccCCCCcCCc
No 494
>PRK11032 hypothetical protein; Provisional
Probab=57.06 E-value=1.5e+02 Score=26.85 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 631 LRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNER 710 (804)
Q Consensus 631 ~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 710 (804)
......+.-+..+...+.....+++.+.......-....++ .-.++..--.-+...+.++-..+.+....+..--. +
T Consensus 3 k~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~el--T~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~-~ 79 (160)
T PRK11032 3 KVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGEL--TRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVF-M 79 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH-H
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHHHhHHhHhcCCCcccccccccccCC--ceeccCCCcccHHHHHHHhhcCCCCcc
Q 003678 711 KKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKE--VVITKCFHLFCNPCIQRNLEIRHRKCP 788 (804)
Q Consensus 711 ~~le~el~~l~~~l~~l~~~~~~~~~~~l~~e~~~~~~~l~C~iC~~~~~~--~v~~~C~H~fC~~Ci~~~~~~~~~~CP 788 (804)
.-+++.+-..-..|..-....-......++.. .+..-++...- -|+..|||..++.=-. +-.-||
T Consensus 80 ~~i~~slw~~L~~ItDrTqvEw~el~~dl~h~--------g~Y~sGEvvg~G~LvC~~Cg~~~~~~~p~-----~i~pCp 146 (160)
T PRK11032 80 RVIKESLWQELADITDKTQLEWREVFQDLNHH--------GVYHSGEVVGLGNLVCEKCHHHLAFYTPE-----VLPLCP 146 (160)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc--------CeeecceeeecceEEecCCCCEEEecCCC-----cCCCCC
Q ss_pred ccCcC
Q 003678 789 GCGTA 793 (804)
Q Consensus 789 ~C~~~ 793 (804)
.|+..
T Consensus 147 ~C~~~ 151 (160)
T PRK11032 147 KCGHD 151 (160)
T ss_pred CCCCC
No 495
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=56.91 E-value=9.5 Score=31.77 Aligned_cols=39 Identities=31% Similarity=0.663 Sum_probs=0.0
Q ss_pred cccccccCCceeccCCCcccHHH--------HHHHhhcCCCCccccC
Q 003678 753 GVCFDRPKEVVITKCFHLFCNPC--------IQRNLEIRHRKCPGCG 791 (804)
Q Consensus 753 ~iC~~~~~~~v~~~C~H~fC~~C--------i~~~~~~~~~~CP~C~ 791 (804)
.+|....+.+....|.=.||..| +...+....-.||.|+
T Consensus 22 ~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Cr 68 (105)
T PF10497_consen 22 TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCR 68 (105)
T ss_pred eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCC
No 496
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.90 E-value=1.7e+02 Score=27.40 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 003678 619 LQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTED 698 (804)
Q Consensus 619 l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~ 698 (804)
|.-.+.-++.+...+.+.+..+......+...+................+..+..-+...+..+...+.-....+..+.+
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003678 699 MRKELENERNERKKLEEELMEVNNKVAELTS 729 (804)
Q Consensus 699 ~~~~l~~~~~~~~~le~el~~l~~~l~~l~~ 729 (804)
...-++..+.+...|...+...+..++..+.
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=56.16 E-value=6.9 Score=27.68 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=0.0
Q ss_pred CCCccccCcCCCCCCc
Q 003678 784 HRKCPGCGTAFGQSDV 799 (804)
Q Consensus 784 ~~~CP~C~~~~~~~d~ 799 (804)
++.||.||+++-.+..
T Consensus 8 H~HC~VCg~aIp~de~ 23 (64)
T COG4068 8 HRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CccccccCCcCCCccc
No 498
>KOG4517 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.95 E-value=5 Score=32.56 Aligned_cols=41 Identities=32% Similarity=0.504 Sum_probs=0.0
Q ss_pred ccccccccCCceeccCC-------CcccHHHHHHHhhcCCCCccccCcCCC
Q 003678 752 CGVCFDRPKEVVITKCF-------HLFCNPCIQRNLEIRHRKCPGCGTAFG 795 (804)
Q Consensus 752 C~iC~~~~~~~v~~~C~-------H~fC~~Ci~~~~~~~~~~CP~C~~~~~ 795 (804)
||.|.-.+-+...+.|| .-|-+-|.-.. |.+.||.|+..|.
T Consensus 70 ~P~~g~g~lEdtftalgi~~ai~~fP~g~ic~~al---r~rrc~ncg~~f~ 117 (117)
T KOG4517|consen 70 CPGCGYGVLEDTFTALGIFLAIILFPFGFICCFAL---RKRRCPNCGPTFA 117 (117)
T ss_pred CCccccchhhhHHHHhhHHHHHHHhhhHHHhhHhh---hhccCCCcccccC
No 499
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=55.94 E-value=3.1e+02 Score=29.99 Aligned_cols=448 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh-----------hhhHHHHHHHHhHH
Q 003678 226 GRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHS-----------SRLYNLVNDQLQHW 294 (804)
Q Consensus 226 ~~~~~~~l~~~l~~l~~~~~~~~~el~~l~~~~~~l~~el~~l~~~l~~~~~~~~-----------~~~~~~l~~~l~~l 294 (804)
++.....+...........-.+..++-.++.....-..++..+..++...-.... ......+...+-..
T Consensus 25 lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~lD~rLvev 104 (531)
T PF15450_consen 25 LQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQLDKRLVEV 104 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 003678 295 NVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-- 372 (804)
Q Consensus 295 ~~el~~~~~~~~~l~~e~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~e~~~l~~~le~~~~~~~-- 372 (804)
+..+..++.....-..+....... +.-++..+...|..-..-.+..-..+.....+..
T Consensus 105 re~L~~irr~q~~q~~erk~~~qe--------------------~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k 164 (531)
T PF15450_consen 105 REALTQIRRKQALQDSERKGSEQE--------------------AGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQK 164 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH--------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHh
Q ss_pred ccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhHhHhhhhHh-----HHHHHHHHH
Q 003678 373 RKDIKAEFRVMASALSKEM--GMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKC-----VEQMAEIKS 445 (804)
Q Consensus 373 ~~~~~~el~~~~~~l~~~~--~~l~~~~~~~~~~~~el~~l~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~ei~~ 445 (804)
...-...+...+..+..++ ..+..+..-.-.+...+-.+...+......--.....+..-.... ......+..
T Consensus 165 ~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~a 244 (531)
T PF15450_consen 165 VDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRA 244 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHhhHHHHHHHHHHhccCCCChhcHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003678 446 LKALIE-KLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAA 524 (804)
Q Consensus 446 l~~~l~-~l~~~~~el~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~l 524 (804)
+.+..+ -+.+...+....++.+. .+...+..+...+...+..|+. .+...+..-
T Consensus 245 l~gq~ev~~~~~~~E~~~l~eq~~----------~ld~AV~~Ltk~v~~~q~sL~k---------------vl~aE~kaR 299 (531)
T PF15450_consen 245 LQGQQEVGLGGIQSEESKLLEQCR----------KLDEAVAQLTKFVQQNQKSLNK---------------VLNAEQKAR 299 (531)
T ss_pred HHhhHhhhhhhhhHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHH---------------HHhhHHHHH
Q ss_pred HHHHHHHHHHHHHhHhhHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 003678 525 EAEIIELVAKLDASERDVM-ELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQ 603 (804)
Q Consensus 525 e~el~~l~~~l~~~~~~~~-~l~~~l~~~~~e~~~l~~e~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~~~~ 603 (804)
...-.-+...+.++...+. .++.--..-.-........++.+.....-+...+..+...+.+|++.+..+.....--.+
T Consensus 300 ~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 300 DAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred HHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHH
Q 003678 604 VQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWEL--------ADAEKEL 675 (804)
Q Consensus 604 ~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~le~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~--------~~l~~~~ 675 (804)
.+..-..+... .-.......++.+..--..+...+..+...++.+-.++..+......++..+ ......+
T Consensus 380 tL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV 457 (531)
T PF15450_consen 380 TLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREV 457 (531)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Q ss_pred HHHHHHhhhcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003678 676 KWLKSAVTSSDKEYEQIQR-----KTEDMRKELENERNERKKLEEELMEVNN 722 (804)
Q Consensus 676 ~~l~~~l~~~~~~l~~~~~-----~~~~~~~~l~~~~~~~~~le~el~~l~~ 722 (804)
..++.++..+-..+.-+.. .+.+++..+. ...+.+++.-+...+.
T Consensus 458 ~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq~nKt 507 (531)
T PF15450_consen 458 GAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQTNKT 507 (531)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHHHHHH
No 500
>PTZ00073 60S ribosomal protein L37; Provisional
Probab=55.90 E-value=3.3 Score=32.36 Aligned_cols=25 Identities=28% Similarity=0.978 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhhcCCCCccccCcC
Q 003678 769 HLFCNPCIQRNLEIRHRKCPGCGTA 793 (804)
Q Consensus 769 H~fC~~Ci~~~~~~~~~~CP~C~~~ 793 (804)
|++|..|-...+......|-.||-|
T Consensus 16 HtlCrRCG~~syH~qK~~CasCGyp 40 (91)
T PTZ00073 16 HTLCRRCGKRSFHVQKKRCASCGYP 40 (91)
T ss_pred cchhcccCccccccccccchhcCCc
Done!