Query 003680
Match_columns 803
No_of_seqs 455 out of 3917
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 18:46:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003680.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1727-1731//hhsearch_pdb/003680hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 404.2 15.6 261 481-759 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 402.9 12.2 261 481-759 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 396.6 14.3 257 482-756 27-304 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 394.5 18.4 264 480-761 35-303 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 389.2 12.6 271 471-758 54-347 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 384.2 14.2 251 480-751 23-276 (350)
7 3hmm_A TGF-beta receptor type- 1.0 1 1 382.7 12.6 273 480-758 2-297 (303)
8 4fie_A Serine/threonine-protei 1.0 1 1 382.7 16.7 251 480-752 150-401 (423)
9 4fih_A Serine/threonine-protei 1.0 1 1 382.2 15.3 250 481-752 74-324 (346)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 380.0 15.5 267 480-770 57-328 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=404.19 Aligned_cols=261 Identities=27% Similarity=0.432 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 39874684444796108999934------996999999155462068999999999973358826678526751855579
Q 003680 481 NNFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKML 554 (803)
Q Consensus 481 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 554 (803)
+++.+.++||+|+||.||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+....++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCC
Q ss_conf 998248998223301889------------98778902268899998966676550488857936569887352599981
Q 003680 555 IYEYMPNRSLDALLFDPL------------KKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNP 622 (803)
Q Consensus 555 V~E~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ 622 (803)
||||+++|+|.+++.... ....++|.+++.|+.|+++||.|||+.+ |+||||||+||||++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2202455100389998642220122788559121125998965655612587899784-898987677830376777664
Q 003680 623 KISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAWKL 701 (803)
Q Consensus 623 ki~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~ 701 (803)
||+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||........... .
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~----i 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC----I 273 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHH----H
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH----H
T ss_conf 976660333656787530047645565665826544799996630010578999998289999999899999999----9
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 0123210002765557854289999999999645449778999988999998102378
Q 003680 702 WNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRD 759 (803)
Q Consensus 702 ~~~~~~~~~id~~l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~~ 759 (803)
..+. .+. .+..++.++.+|+.+||+.||++||||+||+++|+.+.+.
T Consensus 274 -~~g~-----~~~-----~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 -TQGR-----ELE-----RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -HHTC-----CCC-----CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -HCCC-----CCC-----CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf -8089-----899-----8644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=402.86 Aligned_cols=261 Identities=29% Similarity=0.474 Sum_probs=217.7
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 39874684444796108999934------996999999155462068999999999973358826678526751855579
Q 003680 481 NNFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKML 554 (803)
Q Consensus 481 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 554 (803)
++|.+.+.||+|+||.||+|++. ++..||||+++....+..++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEE
Q ss_conf 99824899822330188----------99877890226889999896667655048885793656988735259998122
Q 003680 555 IYEYMPNRSLDALLFDP----------LKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKI 624 (803)
Q Consensus 555 V~E~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ki 624 (803)
||||+++|+|.++|... .....++|.+++.|+.|+++||.|||+.+ |+||||||+||||++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 02455100389998642220122788559121125998965655612587899784-89898767783037677766401
Q 003680 625 SDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAWKLWN 703 (803)
Q Consensus 625 ~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 703 (803)
+|||+++...............||+.|+|||++.+..|+.++|||||||++|||+| |+.||........... . .
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~----i-~ 244 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIEC----I-T 244 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH----H-H
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH----H-H
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899999999----9-8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 23210002765557854289999999999645449778999988999998102378
Q 003680 704 ENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRD 759 (803)
Q Consensus 704 ~~~~~~~id~~l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~~ 759 (803)
.+... . .+..++.++.+++.+||+.||++||+|++|++.|+++.+.
T Consensus 245 ~~~~~-----~-----~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 245 QGRVL-----Q-----RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HTCCC-----C-----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCC-----C-----CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 08988-----9-----9741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=396.63 Aligned_cols=257 Identities=28% Similarity=0.447 Sum_probs=212.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 9874684444796108999934------99699999915546-2068999999999973358826678526751855579
Q 003680 482 NFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKAS-GQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKML 554 (803)
Q Consensus 482 ~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 554 (803)
++++.++||+|+||.||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+....++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9982489982233018899-------------877890226889999896667655048885793656988735259998
Q 003680 555 IYEYMPNRSLDALLFDPLK-------------KERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELN 621 (803)
Q Consensus 555 V~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~ 621 (803)
||||+++|+|.++|..... ...++|.+++.|+.|||+||.|||+.+ |+||||||+||||++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 12202455100389998642220122788559121125998965655612587899784-89898767783037677766
Q 003680 622 PKISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAWK 700 (803)
Q Consensus 622 ~ki~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~p~~~~~~~~~~~~~~~~ 700 (803)
+||+|||+++...............||+.|+|||++.++.++.++|||||||++|||+| |+.||........ ...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~-~~~--- 259 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV-VEM--- 259 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHH-HHH---
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHH---
T ss_conf 8988760202336777404734512577656989982799996300015799999999689999999899999-999---
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 40123210002765557854289999999999645449778999988999998102
Q 003680 701 LWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSE 756 (803)
Q Consensus 701 ~~~~~~~~~~id~~l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~ 756 (803)
...+... +.+.+++..+.+++.+||+.+|++||+|+||+++|+..
T Consensus 260 -i~~~~~~----------~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 -IRNRQVL----------PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -HHTTCCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -HHCCCCC----------CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf -9819989----------99620369999999997587965792999999999853
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.54 Aligned_cols=264 Identities=28% Similarity=0.468 Sum_probs=212.6
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 2398746844447961089999349969999991554--62068999999999973358826678526751855579998
Q 003680 480 TNNFQLSSKLGQGGFGPVYWGRLKDGQEIAVKRLSKA--SGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYE 557 (803)
Q Consensus 480 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 557 (803)
.+++.+.++||+|+||+||+|+++ ..||||+++.. ..+..+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 799498449820888689999989--968999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCC
Q ss_conf 24899822330188998778902268899998966676550488857936569887352599981220245510038999
Q 003680 558 YMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQ 637 (803)
Q Consensus 558 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ki~Dfgla~~~~~~~ 637 (803)
|+++|+|.++|.. ....+++.+++.|+.|||+||+|||+.+ |+||||||+||||++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCCHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 4899878898752--4899999999999999999999997799---5278557899788899908994415754246677
Q ss_pred CCCCCCEEECCCCCCCHHHHCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8642220122788559121125---9989656556125878997848989876778303767776640123210002765
Q 003680 638 DQADTGRVVGTFGYMSPEYAME---GRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPF 714 (803)
Q Consensus 638 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 714 (803)
........+||+.|||||++.. ..|+.++|||||||++|||+||+.||........+...... + ...|.
T Consensus 187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~----~----~~~p~ 258 (307)
T 3omv_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR----G----YASPD 258 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHT----T----CCCCC
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC----C----CCCCC
T ss_conf 640315644687724987861468998786877572899999999788998999969999999965----8----88887
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 55785428999999999964544977899998899999810237899
Q 003680 715 LSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRDLP 761 (803)
Q Consensus 715 l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~~~~ 761 (803)
+.. .+.+++..+.+++.+||+.+|++||||.||+++|+.+-..+|
T Consensus 259 ~~~--~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 259 LSK--LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp STT--SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCC--CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 200--354456999999999757797689098999999999745078
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=389.21 Aligned_cols=271 Identities=27% Similarity=0.361 Sum_probs=218.9
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC------CCEEEEEEECCCCC-CCHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 4978899972398746844447961089999349------96999999155462-068999999999973358-826678
Q 003680 471 FQFEELATATNNFQLSSKLGQGGFGPVYWGRLKD------GQEIAVKRLSKASG-QGLEEFMNEVMVISKLQH-RNLVRL 542 (803)
Q Consensus 471 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H-~niv~l 542 (803)
+...+.+...++|++.+.||+|+||.||+|.... ++.||||.+..... ...+.|.+|+++|.++.| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEEECCCCCHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 5267518-55579998248998223301889-------------987789022688999989666765504888579365
Q 003680 543 LGCCVEG-EEKMLIYEYMPNRSLDALLFDPL-------------KKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRD 608 (803)
Q Consensus 543 ~g~~~~~-~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~D 608 (803)
+|+|.+. ...++||||+++|+|.++|.... ....+++.+++.++.|||+||.|||+.+ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 698873525999812202455100389998642220122788559121125998965655612587899784-8989876
Q 003680 609 LKASNILLDEELNPKISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSF 687 (803)
Q Consensus 609 Ikp~NIll~~~~~~ki~Dfgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~p~~~ 687 (803)
|||+|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 77830376777664012321000276555785428999999999964544977899998899999810237
Q 003680 688 FEDDLTILGYAWKLWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIR 758 (803)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~ 758 (803)
......+.... ..+. .+. .+...+.++.+++.+||+.||++|||++||++.|+.+++
T Consensus 291 ~~~~~~~~~~i----~~g~-----~~~-----~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 291 VKIDEEFCRRL----KEGT-----RMR-----APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp CCCSHHHHHHH----HHTC-----CCC-----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HCCC-----CCC-----CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 89899999999----7389-----888-----886578999999999768696679399999999999998
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=384.22 Aligned_cols=251 Identities=22% Similarity=0.351 Sum_probs=208.2
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 239874684444796108999934-9969999991554--6206899999999997335882667852675185557999
Q 003680 480 TNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKA--SGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIY 556 (803)
Q Consensus 480 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 556 (803)
.++|++.+.||+|+||.||+++.. +++.||||++.+. .....+.+.+|++++++++|||||++++++.++...|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCC
Q ss_conf 82489982233018899877890226889999896667655048885793656988735259998122024551003899
Q 003680 557 EYMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGN 636 (803)
Q Consensus 557 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ki~Dfgla~~~~~~ 636 (803)
||+++|+|.+++... +...+++.++..++.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+++.+...
T Consensus 103 Ey~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred ECCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 488998399999973-8999978999999999999999999899---151359789979878999897646521440688
Q ss_pred CCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98642220122788559121125998965655612587899784898987677830376777664012321000276555
Q 003680 637 QDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLS 716 (803)
Q Consensus 637 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~ 716 (803)
.......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...+....+.. ... +.. +.
T Consensus 179 --~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~----i~~-~~~-----~~-- 244 (350)
T 4b9d_A 179 --VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLK----IIS-GSF-----PP-- 244 (350)
T ss_dssp --HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH----HHH-TCC-----CC--
T ss_pred --CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----HHC-CCC-----CC--
T ss_conf --5410145788360399998799989599999999999999978799899699999999----980-899-----99--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 78542899999999996454497789999889999
Q 003680 717 ESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVS 751 (803)
Q Consensus 717 ~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~ 751 (803)
.+...+.++.+++.+||+.||++||+++|+++
T Consensus 245 ---~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 245 ---VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf ---97557999999999985589667908999963
No 7
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=382.75 Aligned_cols=273 Identities=21% Similarity=0.270 Sum_probs=206.4
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEE
Q ss_conf 23987468444479610899993499699999915546206899999999997335882667852675185----55799
Q 003680 480 TNNFQLSSKLGQGGFGPVYWGRLKDGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGE----EKMLI 555 (803)
Q Consensus 480 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lV 555 (803)
.++|.+.+.||+|+||.||+|++. |+.||||++..... ....+..|+..+.+++|||||+++|++.+.. ..++|
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV 79 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred CCEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 858999789840899399999999-98999999883133-6699999999986089998870999998468872378877
Q ss_pred EEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEECCCCCCCEEECCCCCCEEECCCCC
Q ss_conf 98248998223301889987789022688999989666765504-----8885793656988735259998122024551
Q 003680 556 YEYMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRD-----SRLRIIHRDLKASNILLDEELNPKISDFGMA 630 (803)
Q Consensus 556 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~-----~~~~ivH~DIkp~NIll~~~~~~ki~Dfgla 630 (803)
|||+++|+|.+++. ...+++..+.+++.|+++||+|||+. ..++|+||||||+||||+.++++||+|||++
T Consensus 80 ~Ey~~~gsL~~~l~----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 80 SDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EECCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred ECCCCCCCHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 51789996899997----57999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCCC--CCCEEECCCCCCCHHHHCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHH-HHHH----
Q ss_conf 0038999864--22201227885591211259------989656556125878997848989876778303-7677----
Q 003680 631 KIFGGNQDQA--DTGRVVGTFGYMSPEYAMEG------RFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLT-ILGY---- 697 (803)
Q Consensus 631 ~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~-~~~~---- 697 (803)
+......... .....+||+.|+|||++.+. .++.++|||||||++|||+||+.|+....+... ....
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 45567777322104642466462698884565455677657067666479999999878998776652235310025454
Q ss_pred -HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf -7664012321000276555785428999999999964544977899998899999810237
Q 003680 698 -AWKLWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIR 758 (803)
Q Consensus 698 -~~~~~~~~~~~~~id~~l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~ 758 (803)
..............+|.+.......+.+..+.+++.+||+.||++||||.||+++|+++.+
T Consensus 236 ~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 236 PSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 30999999875025799887655665899999999999760597579599999999998898
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.67 Aligned_cols=251 Identities=22% Similarity=0.316 Sum_probs=209.5
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 239874684444796108999934-9969999991554620689999999999733588266785267518555799982
Q 003680 480 TNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEY 558 (803)
Q Consensus 480 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~ 558 (803)
.+.|++.++||+|+||.||+|+.+ +++.||||++........+.+.+|+.+|++++|||||++++++.+++..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCC
Q ss_conf 48998223301889987789022688999989666765504888579365698873525999812202455100389998
Q 003680 559 MPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQD 638 (803)
Q Consensus 559 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ki~Dfgla~~~~~~~~ 638 (803)
+++|+|.+++. ...+++.++..++.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+++.+....
T Consensus 230 ~~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 230 LEGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CTTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 89982898876----169899999999999999999999889---0446578777898589998980372654777887-
Q ss_pred CCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 64222012278855912112599896565561258789978489898767783037677766401232100027655578
Q 003680 639 QADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLSES 718 (803)
Q Consensus 639 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~ 718 (803)
......+||+.|||||++.+..|+.++|||||||++|||++|+.||........+.. .. ....+.+.
T Consensus 302 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~----i~------~~~~~~~~-- 368 (423)
T 4fie_A 302 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM----IR------DNLPPRLK-- 368 (423)
T ss_dssp -CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH----HH------HSCCCCCS--
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----HH------CCCCCCCC--
T ss_conf -643466647472799997799999689999999999999978799898699999999----97------27998876--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 5428999999999964544977899998899999
Q 003680 719 SFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSM 752 (803)
Q Consensus 719 ~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~ 752 (803)
........+.+++.+||+.||++||+++|+++.
T Consensus 369 -~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 369 -NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp -CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf -501299999999999867895689099999609
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=382.22 Aligned_cols=250 Identities=22% Similarity=0.317 Sum_probs=209.3
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEEC
Q ss_conf 39874684444796108999934-99699999915546206899999999997335882667852675185557999824
Q 003680 481 NNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEYM 559 (803)
Q Consensus 481 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~~ 559 (803)
+.|++.++||+|+||.||+|+.+ +++.||||++........+.+.+|+++|++++|||||++++++.+++..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89982233018899877890226889999896667655048885793656988735259998122024551003899986
Q 003680 560 PNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQDQ 639 (803)
Q Consensus 560 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ki~Dfgla~~~~~~~~~ 639 (803)
++|+|.+++. ...+++.++..++.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+++.+....
T Consensus 154 ~gg~L~~~l~----~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-- 224 (346)
T 4fih_A 154 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-- 224 (346)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--
T ss_pred CCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC--
T ss_conf 9980899987----189899999999999999999999888---3556278899788799988990275753667887--
Q ss_pred CCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 42220122788559121125998965655612587899784898987677830376777664012321000276555785
Q 003680 640 ADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLSESS 719 (803)
Q Consensus 640 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~ 719 (803)
......+||+.|+|||++.+..|+.++||||+||++|||++|+.||...+....+.. . .....+.+.
T Consensus 225 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~----i------~~~~~~~~~--- 291 (346)
T 4fih_A 225 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM----I------RDNLPPRLK--- 291 (346)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH----H------HHSSCCCCS---
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----H------HCCCCCCCC---
T ss_conf 753465627582799997799999689999999999999978799898599999999----9------717999887---
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 428999999999964544977899998899999
Q 003680 720 FQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSM 752 (803)
Q Consensus 720 ~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~ 752 (803)
.......++.+++.+||+.||++|||++|+++.
T Consensus 292 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 292 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 502299999999999867995689099999609
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=380.01 Aligned_cols=267 Identities=21% Similarity=0.236 Sum_probs=215.6
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 239874684444796108999934-9969999991554620689999999999733588266785267518555799982
Q 003680 480 TNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEY 558 (803)
Q Consensus 480 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E~ 558 (803)
.+.|.+.++||+|+||.||+|+.+ .++.||||+++.... ..+|+.++++++|||||++++++.++...++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CCEEECCCCCCCCCCCC
Q ss_conf 48998223301889987789022688999989666765504888579365698873525999-81220245510038999
Q 003680 559 MPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEEL-NPKISDFGMAKIFGGNQ 637 (803)
Q Consensus 559 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~-~~ki~Dfgla~~~~~~~ 637 (803)
+++|+|.+++. +.+.+++.++..++.||+.||.|||+.+ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIK---QMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998---7699999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CC---CCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 86---422201227885591211259989656556125878997848989876778303767776640123210002765
Q 003680 638 DQ---ADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPF 714 (803)
Q Consensus 638 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 714 (803)
.. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.............. ... .
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~----~~~-------~ 274 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS----EPP-------P 274 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHH----SCC-------G
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC----CCC-------C
T ss_conf 65402217854558020089998899989089999999999999978699899899999999980----899-------8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 55785428999999999964544977899998899999810237899999998645
Q 003680 715 LSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRDLPYPKEPAFTE 770 (803)
Q Consensus 715 l~~~~~~~~~~~~l~~li~~Cl~~dP~~RPt~~ev~~~L~~~~~~~~~p~~p~~~~ 770 (803)
. ...+...+..+.+++.+||+.||++|||+.|+++.|...+.+...-..|-+..
T Consensus 275 ~--~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 275 I--REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp G--GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred C--HHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 0--02586679999999999762897689599999999999975443216987677
Done!