Query 003681
Match_columns 803
No_of_seqs 621 out of 3221
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 8.6E-68 1.9E-72 612.2 17.9 686 3-694 181-1092(1125)
2 TIGR01070 mutS1 DNA mismatch r 100.0 1.4E-49 3.1E-54 478.2 45.9 510 123-693 251-783 (840)
3 PRK05399 DNA mismatch repair p 100.0 2.4E-49 5.2E-54 478.3 46.7 507 123-693 265-798 (854)
4 COG0249 MutS Mismatch repair A 100.0 3.1E-48 6.7E-53 463.1 40.4 301 389-694 494-799 (843)
5 PRK00409 recombination and DNA 100.0 4.3E-46 9.2E-51 445.8 41.9 443 185-691 64-514 (782)
6 TIGR01069 mutS2 MutS2 family p 100.0 8.6E-45 1.9E-49 433.6 43.9 470 152-691 24-509 (771)
7 KOG0219 Mismatch repair ATPase 100.0 2.4E-42 5.1E-47 394.4 21.9 406 256-696 426-839 (902)
8 KOG0218 Mismatch repair MSH3 [ 100.0 1.9E-41 4.1E-46 380.2 20.1 315 376-694 702-1030(1070)
9 PF00488 MutS_V: MutS domain V 100.0 6.8E-41 1.5E-45 350.5 19.1 226 462-692 1-233 (235)
10 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.2E-37 2.6E-42 322.4 17.4 193 492-684 15-218 (218)
11 KOG0220 Mismatch repair ATPase 100.0 4.3E-37 9.2E-42 346.8 18.8 314 393-717 514-834 (867)
12 cd03287 ABC_MSH3_euk MutS3 hom 100.0 2.2E-36 4.8E-41 313.9 17.3 192 493-684 17-222 (222)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 5.7E-36 1.2E-40 311.0 20.2 200 492-691 15-221 (222)
14 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.2E-35 2.6E-40 307.3 18.1 196 493-688 17-216 (216)
15 smart00534 MUTSac ATPase domai 100.0 1.1E-34 2.3E-39 292.9 17.1 184 505-688 1-185 (185)
16 COG1193 Mismatch repair ATPase 100.0 2.5E-34 5.5E-39 339.2 22.1 358 303-691 141-502 (753)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.7E-33 3.8E-38 288.8 17.8 185 491-675 13-203 (204)
18 KOG0221 Mismatch repair ATPase 100.0 7.9E-33 1.7E-37 307.6 23.5 521 125-695 241-797 (849)
19 cd03281 ABC_MSH5_euk MutS5 hom 100.0 3.7E-33 8E-38 288.2 17.6 184 493-676 15-213 (213)
20 cd03283 ABC_MutS-like MutS-lik 100.0 9.4E-33 2E-37 282.3 17.6 184 492-676 12-199 (199)
21 cd03243 ABC_MutS_homologs The 100.0 8.7E-32 1.9E-36 274.9 17.7 185 492-676 16-202 (202)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 6.7E-31 1.5E-35 268.1 16.7 183 492-676 14-200 (200)
23 COG1126 GlnQ ABC-type polar am 99.8 1.1E-20 2.4E-25 192.2 12.9 148 478-630 3-201 (240)
24 COG4152 ABC-type uncharacteriz 99.8 1E-20 2.2E-25 194.9 12.3 148 477-629 2-194 (300)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.3E-20 2.8E-25 198.0 12.7 148 477-629 4-203 (254)
26 COG1131 CcmA ABC-type multidru 99.8 4E-20 8.6E-25 200.0 14.1 163 478-645 5-218 (293)
27 COG1116 TauB ABC-type nitrate/ 99.8 4.4E-20 9.5E-25 192.1 13.3 150 477-630 3-196 (248)
28 COG1120 FepC ABC-type cobalami 99.8 4.8E-20 1E-24 194.5 13.5 151 478-633 3-208 (258)
29 COG1136 SalX ABC-type antimicr 99.8 1.5E-19 3.3E-24 187.3 13.6 161 479-640 3-218 (226)
30 COG1127 Ttg2A ABC-type transpo 99.8 9.3E-20 2E-24 188.0 11.5 163 477-644 8-226 (263)
31 PRK13537 nodulation ABC transp 99.8 2.2E-19 4.7E-24 195.3 14.4 162 477-643 7-217 (306)
32 PRK13536 nodulation factor exp 99.8 2.9E-19 6.3E-24 197.0 14.9 163 476-643 40-251 (340)
33 COG4555 NatA ABC-type Na+ tran 99.8 4.9E-20 1.1E-24 185.4 7.6 162 478-643 2-212 (245)
34 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 7.1E-19 1.5E-23 181.0 12.7 137 494-631 17-207 (218)
35 COG1125 OpuBA ABC-type proline 99.8 1.7E-19 3.7E-24 187.0 7.9 153 478-634 2-206 (309)
36 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.2E-18 2.6E-23 179.9 13.7 139 494-633 17-201 (220)
37 TIGR00960 3a0501s02 Type II (G 99.8 1.3E-18 2.7E-23 179.1 13.5 148 478-629 2-202 (216)
38 COG3842 PotA ABC-type spermidi 99.8 2.1E-19 4.5E-24 197.1 8.1 161 476-640 4-213 (352)
39 cd03259 ABC_Carb_Solutes_like 99.8 1.4E-18 2.9E-23 178.5 13.3 148 480-632 3-199 (213)
40 cd03214 ABC_Iron-Siderophores_ 99.8 9.5E-19 2.1E-23 175.7 11.9 138 494-633 12-167 (180)
41 TIGR01288 nodI ATP-binding ABC 99.8 1.6E-18 3.5E-23 188.1 14.2 160 477-641 4-212 (303)
42 cd03230 ABC_DR_subfamily_A Thi 99.8 4.5E-19 9.7E-24 176.9 8.6 130 494-629 13-159 (173)
43 cd03265 ABC_DrrA DrrA is the A 99.8 1.4E-18 3.1E-23 179.3 12.6 151 479-634 2-202 (220)
44 cd03227 ABC_Class2 ABC-type Cl 99.8 1.7E-18 3.7E-23 171.4 12.5 124 495-632 11-148 (162)
45 TIGR02211 LolD_lipo_ex lipopro 99.8 2.7E-18 5.8E-23 177.1 14.5 153 478-631 2-208 (221)
46 cd03232 ABC_PDR_domain2 The pl 99.8 5.9E-19 1.3E-23 179.0 9.4 155 477-632 3-177 (192)
47 cd03268 ABC_BcrA_bacitracin_re 99.8 1.5E-18 3.3E-23 177.5 12.5 149 480-633 3-195 (208)
48 cd03246 ABCC_Protease_Secretio 99.8 6.2E-19 1.3E-23 175.9 9.3 130 494-631 15-162 (173)
49 PRK11247 ssuB aliphatic sulfon 99.8 2.4E-18 5.1E-23 182.9 14.3 154 476-634 11-204 (257)
50 TIGR01188 drrA daunorubicin re 99.8 2.2E-18 4.9E-23 186.9 14.4 148 493-641 5-201 (302)
51 cd03226 ABC_cobalt_CbiO_domain 99.8 1.6E-18 3.4E-23 177.2 12.3 138 494-632 13-194 (205)
52 TIGR02673 FtsE cell division A 99.8 2E-18 4.3E-23 177.2 13.1 148 478-629 2-201 (214)
53 cd03229 ABC_Class3 This class 99.8 7.2E-19 1.6E-23 176.2 9.4 133 493-629 12-165 (178)
54 cd03292 ABC_FtsE_transporter F 99.8 1.8E-18 3.8E-23 177.4 12.3 135 494-629 14-200 (214)
55 cd03269 ABC_putative_ATPase Th 99.8 2.4E-18 5.2E-23 176.3 13.1 148 480-632 3-196 (210)
56 cd03219 ABC_Mj1267_LivG_branch 99.8 2.8E-18 6E-23 178.7 13.6 140 493-633 12-212 (236)
57 cd03261 ABC_Org_Solvent_Resist 99.8 3.2E-18 7E-23 178.5 14.0 149 480-633 3-206 (235)
58 COG3839 MalK ABC-type sugar tr 99.8 6.3E-19 1.4E-23 192.4 8.9 153 477-634 3-204 (338)
59 cd03218 ABC_YhbG The ABC trans 99.8 3E-18 6.5E-23 178.0 13.7 149 480-633 3-202 (232)
60 cd03262 ABC_HisP_GlnQ_permease 99.8 2.5E-18 5.5E-23 176.2 12.8 139 493-632 12-203 (213)
61 cd03256 ABC_PhnC_transporter A 99.8 3.9E-18 8.4E-23 178.0 14.3 150 480-633 3-214 (241)
62 TIGR02315 ABC_phnC phosphonate 99.8 3E-18 6.5E-23 179.2 13.4 151 478-632 2-214 (243)
63 cd03225 ABC_cobalt_CbiO_domain 99.8 1.9E-18 4.1E-23 177.0 11.6 135 494-629 14-198 (211)
64 PRK11629 lolD lipoprotein tran 99.8 5.3E-18 1.1E-22 176.8 15.1 152 478-630 6-211 (233)
65 cd03301 ABC_MalK_N The N-termi 99.8 3E-18 6.4E-23 175.8 12.4 145 480-629 3-195 (213)
66 PRK10584 putative ABC transpor 99.8 5.6E-18 1.2E-22 175.7 14.5 155 477-632 6-214 (228)
67 cd03258 ABC_MetN_methionine_tr 99.8 6.2E-18 1.3E-22 175.9 14.9 156 478-634 2-211 (233)
68 cd03216 ABC_Carb_Monos_I This 99.8 3.3E-18 7.1E-23 169.5 12.1 141 480-632 3-150 (163)
69 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.4E-18 5.1E-23 175.7 11.3 141 493-634 12-175 (200)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 5.6E-18 1.2E-22 176.9 14.4 150 478-632 2-200 (236)
71 PRK09536 btuD corrinoid ABC tr 99.8 4.1E-18 8.9E-23 191.6 14.3 157 478-639 4-214 (402)
72 TIGR03522 GldA_ABC_ATP gliding 99.8 4.1E-18 8.8E-23 184.8 13.5 160 478-643 3-211 (301)
73 COG2884 FtsE Predicted ATPase 99.8 1.8E-18 3.9E-23 172.9 9.8 149 478-630 2-202 (223)
74 cd03223 ABCD_peroxisomal_ALDP 99.8 1.6E-18 3.4E-23 172.3 9.3 134 493-632 13-155 (166)
75 cd03224 ABC_TM1139_LivF_branch 99.8 4.3E-18 9.4E-23 175.5 12.9 149 480-633 3-201 (222)
76 cd03266 ABC_NatA_sodium_export 99.8 4.4E-18 9.6E-23 175.2 12.8 137 495-632 19-204 (218)
77 PRK11300 livG leucine/isoleuci 99.8 6.2E-18 1.3E-22 178.3 13.9 151 477-632 5-222 (255)
78 TIGR02314 ABC_MetN D-methionin 99.8 6.7E-18 1.5E-22 186.4 14.5 157 478-635 2-212 (343)
79 cd03296 ABC_CysA_sulfate_impor 99.8 7.2E-18 1.6E-22 176.4 13.9 151 478-633 3-206 (239)
80 cd03263 ABC_subfamily_A The AB 99.8 4.3E-18 9.3E-23 175.5 12.0 138 494-633 15-201 (220)
81 cd03235 ABC_Metallic_Cations A 99.8 4.2E-18 9.1E-23 174.9 11.8 136 493-629 11-196 (213)
82 TIGR01166 cbiO cobalt transpor 99.8 4E-18 8.7E-23 172.2 11.4 134 493-627 4-189 (190)
83 TIGR03608 L_ocin_972_ABC putat 99.8 4.6E-18 1E-22 173.4 12.0 138 493-631 10-200 (206)
84 PRK11264 putative amino-acid A 99.7 1E-17 2.2E-22 176.1 14.8 151 478-633 4-213 (250)
85 PRK09493 glnQ glutamine ABC tr 99.7 8E-18 1.7E-22 176.0 13.8 151 478-633 2-205 (240)
86 PRK10908 cell division protein 99.7 8.7E-18 1.9E-22 173.8 13.6 148 478-629 2-201 (222)
87 PRK13647 cbiO cobalt transport 99.7 6.5E-18 1.4E-22 180.9 13.0 161 477-641 4-215 (274)
88 PRK11153 metN DL-methionine tr 99.7 9.7E-18 2.1E-22 185.2 14.6 161 478-639 2-216 (343)
89 TIGR03265 PhnT2 putative 2-ami 99.7 6.4E-18 1.4E-22 187.3 13.1 162 477-642 4-213 (353)
90 COG3638 ABC-type phosphate/pho 99.7 4.6E-18 1E-22 175.1 11.1 165 477-645 3-229 (258)
91 TIGR03410 urea_trans_UrtE urea 99.7 5.7E-18 1.2E-22 175.9 12.0 149 480-633 3-201 (230)
92 PRK13538 cytochrome c biogenes 99.7 7.8E-18 1.7E-22 172.2 12.7 148 478-630 2-194 (204)
93 PRK10895 lipopolysaccharide AB 99.7 1.1E-17 2.4E-22 175.0 14.2 151 478-633 4-206 (241)
94 cd03228 ABCC_MRP_Like The MRP 99.7 2.8E-18 6.1E-23 170.9 9.1 126 495-630 16-160 (171)
95 PRK13644 cbiO cobalt transport 99.7 8.4E-18 1.8E-22 180.0 13.3 153 478-634 2-205 (274)
96 cd03247 ABCC_cytochrome_bd The 99.7 3.2E-18 7E-23 171.4 9.3 130 495-631 16-163 (178)
97 PRK13638 cbiO cobalt transport 99.7 7.9E-18 1.7E-22 179.7 12.8 152 478-634 2-206 (271)
98 cd03213 ABCG_EPDR ABCG transpo 99.7 2.7E-18 5.8E-23 174.7 8.7 155 478-633 4-181 (194)
99 TIGR01978 sufC FeS assembly AT 99.7 1.6E-17 3.4E-22 173.6 14.5 146 480-630 3-209 (243)
100 PRK11000 maltose/maltodextrin 99.7 1.1E-17 2.5E-22 186.4 14.2 158 478-640 4-210 (369)
101 PRK11248 tauB taurine transpor 99.7 9.3E-18 2E-22 177.8 12.8 151 478-633 2-198 (255)
102 TIGR03740 galliderm_ABC gallid 99.7 1E-17 2.3E-22 173.3 12.6 146 493-639 12-199 (223)
103 PRK11650 ugpC glycerol-3-phosp 99.7 9.4E-18 2E-22 186.2 13.1 161 478-642 4-213 (356)
104 cd03215 ABC_Carb_Monos_II This 99.7 4.2E-18 9.1E-23 171.3 9.4 141 478-628 5-167 (182)
105 cd03231 ABC_CcmA_heme_exporter 99.7 1.1E-17 2.4E-22 170.9 12.6 143 480-627 3-187 (201)
106 TIGR03411 urea_trans_UrtD urea 99.7 1.9E-17 4E-22 173.3 14.6 150 478-633 3-211 (242)
107 PRK13540 cytochrome c biogenes 99.7 1.4E-17 3E-22 169.8 13.2 150 478-632 2-194 (200)
108 PRK13539 cytochrome c biogenes 99.7 1.2E-17 2.6E-22 171.3 12.7 148 478-630 3-192 (207)
109 cd03260 ABC_PstB_phosphate_tra 99.7 1.6E-17 3.5E-22 172.1 13.8 146 493-640 12-216 (227)
110 cd03238 ABC_UvrA The excision 99.7 9.8E-18 2.1E-22 168.7 11.6 137 493-632 7-156 (176)
111 PRK11124 artP arginine transpo 99.7 1.9E-17 4E-22 173.5 14.2 152 478-634 3-211 (242)
112 PRK11432 fbpC ferric transport 99.7 1.1E-17 2.3E-22 185.4 13.0 161 477-642 6-215 (351)
113 TIGR03258 PhnT 2-aminoethylpho 99.7 9.3E-18 2E-22 186.6 12.5 161 477-642 5-217 (362)
114 PRK10247 putative ABC transpor 99.7 2.1E-17 4.6E-22 171.6 14.4 150 477-631 7-204 (225)
115 PRK13635 cbiO cobalt transport 99.7 1.3E-17 2.9E-22 178.9 13.3 152 478-632 6-208 (279)
116 PRK13637 cbiO cobalt transport 99.7 1.8E-17 4E-22 178.6 14.2 162 478-640 3-221 (287)
117 PRK13548 hmuV hemin importer A 99.7 1.6E-17 3.5E-22 176.1 13.5 150 478-632 3-209 (258)
118 TIGR03873 F420-0_ABC_ATP propo 99.7 1.7E-17 3.6E-22 175.5 13.5 151 478-633 2-206 (256)
119 PRK11231 fecE iron-dicitrate t 99.7 1.6E-17 3.5E-22 175.5 13.2 150 478-632 3-206 (255)
120 PRK10575 iron-hydroxamate tran 99.7 2.3E-17 5E-22 175.5 14.4 152 477-633 11-217 (265)
121 PRK10851 sulfate/thiosulfate t 99.7 2E-17 4.4E-22 183.4 14.5 160 478-642 3-215 (353)
122 COG1118 CysA ABC-type sulfate/ 99.7 6.9E-18 1.5E-22 179.2 10.0 161 478-643 3-217 (345)
123 PRK09544 znuC high-affinity zi 99.7 1.5E-17 3.2E-22 176.1 12.6 150 478-632 5-189 (251)
124 PRK11614 livF leucine/isoleuci 99.7 1.3E-17 2.8E-22 174.1 12.0 151 478-633 6-206 (237)
125 PRK14250 phosphate ABC transpo 99.7 2.4E-17 5.3E-22 172.9 14.1 152 478-634 4-202 (241)
126 TIGR01189 ccmA heme ABC export 99.7 1.5E-17 3.3E-22 169.2 12.1 134 493-627 12-189 (198)
127 cd03295 ABC_OpuCA_Osmoprotecti 99.7 2.5E-17 5.4E-22 172.6 14.1 139 494-633 14-205 (242)
128 PRK11831 putative ABC transpor 99.7 2.3E-17 4.9E-22 176.1 14.0 148 477-629 7-208 (269)
129 PRK13543 cytochrome c biogenes 99.7 2.3E-17 5E-22 170.1 13.6 148 477-629 11-201 (214)
130 cd03264 ABC_drug_resistance_li 99.7 1.6E-17 3.4E-22 170.4 12.3 138 493-633 12-198 (211)
131 cd03267 ABC_NatA_like Similar 99.7 2.1E-17 4.5E-22 173.0 13.4 141 492-633 32-223 (236)
132 TIGR02982 heterocyst_DevA ABC 99.7 2.5E-17 5.3E-22 170.3 13.8 154 478-632 2-209 (220)
133 PRK09452 potA putrescine/sperm 99.7 2.2E-17 4.7E-22 184.4 14.2 161 477-642 14-223 (375)
134 PRK10253 iron-enterobactin tra 99.7 2.8E-17 6.1E-22 174.9 14.4 153 476-633 6-213 (265)
135 PRK09984 phosphonate/organopho 99.7 2.6E-17 5.6E-22 174.6 14.1 151 478-633 5-222 (262)
136 COG1137 YhbG ABC-type (unclass 99.7 1.8E-18 4E-23 174.0 4.9 161 477-642 4-217 (243)
137 PRK13650 cbiO cobalt transport 99.7 2.5E-17 5.5E-22 176.8 13.8 155 478-634 5-210 (279)
138 cd03294 ABC_Pro_Gly_Bertaine T 99.7 2.2E-17 4.9E-22 176.2 13.3 141 492-633 35-230 (269)
139 PRK13633 cobalt transporter AT 99.7 2.7E-17 5.9E-22 176.5 13.9 155 477-632 4-212 (280)
140 cd03257 ABC_NikE_OppD_transpor 99.7 3.3E-17 7.1E-22 169.5 14.0 155 478-633 2-215 (228)
141 TIGR03005 ectoine_ehuA ectoine 99.7 2.6E-17 5.6E-22 173.5 13.4 151 479-634 2-217 (252)
142 PRK13632 cbiO cobalt transport 99.7 3E-17 6.5E-22 175.3 14.1 153 477-632 7-210 (271)
143 COG0411 LivG ABC-type branched 99.7 8.2E-18 1.8E-22 174.2 9.3 151 478-633 5-219 (250)
144 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.6E-17 5.6E-22 171.1 13.0 150 478-632 23-210 (224)
145 PRK13648 cbiO cobalt transport 99.7 4E-17 8.6E-22 174.1 14.5 152 477-631 7-209 (269)
146 PRK13652 cbiO cobalt transport 99.7 3.7E-17 8E-22 175.2 14.4 159 478-640 4-214 (277)
147 PRK11607 potG putrescine trans 99.7 3.2E-17 6.9E-22 183.2 14.3 162 477-642 19-228 (377)
148 PRK10619 histidine/lysine/argi 99.7 4.2E-17 9E-22 172.6 14.3 153 477-634 5-222 (257)
149 PRK15056 manganese/iron transp 99.7 2.8E-17 6.2E-22 175.6 13.1 148 477-628 6-205 (272)
150 cd03254 ABCC_Glucan_exporter_l 99.7 2.4E-17 5.2E-22 171.0 11.9 149 478-631 3-204 (229)
151 cd03252 ABCC_Hemolysin The ABC 99.7 3.7E-17 8E-22 170.6 13.4 138 493-632 14-204 (237)
152 PRK15439 autoinducer 2 ABC tra 99.7 3.6E-17 7.8E-22 189.5 14.6 158 478-640 12-216 (510)
153 cd03298 ABC_ThiQ_thiamine_tran 99.7 3.3E-17 7.2E-22 168.0 12.7 134 499-633 16-198 (211)
154 cd03245 ABCC_bacteriocin_expor 99.7 2.5E-17 5.4E-22 169.8 11.7 151 478-632 3-206 (220)
155 PRK13641 cbiO cobalt transport 99.7 3.9E-17 8.5E-22 176.0 13.7 156 478-634 3-215 (287)
156 PRK10762 D-ribose transporter 99.7 4E-17 8.6E-22 188.6 14.7 160 478-642 5-219 (501)
157 cd03250 ABCC_MRP_domain1 Domai 99.7 1.4E-17 3E-22 170.1 9.7 138 494-631 18-194 (204)
158 PRK13643 cbiO cobalt transport 99.7 4.1E-17 8.9E-22 175.9 13.7 164 478-642 2-222 (288)
159 PRK13639 cbiO cobalt transport 99.7 4.9E-17 1.1E-21 174.1 14.1 153 478-634 2-207 (275)
160 COG0410 LivF ABC-type branched 99.7 1.8E-17 4E-22 170.5 10.3 160 477-641 3-214 (237)
161 TIGR01186 proV glycine betaine 99.7 2.7E-17 5.8E-22 182.8 12.2 149 492-641 4-207 (363)
162 PRK13636 cbiO cobalt transport 99.7 5.3E-17 1.2E-21 174.6 14.1 159 478-640 6-218 (283)
163 cd03251 ABCC_MsbA MsbA is an e 99.7 2.6E-17 5.5E-22 171.3 11.3 138 495-634 16-206 (234)
164 TIGR00968 3a0106s01 sulfate AB 99.7 4E-17 8.7E-22 170.8 12.7 149 493-642 12-209 (237)
165 PRK13549 xylose transporter AT 99.7 4.3E-17 9.4E-22 188.6 14.2 159 478-641 6-220 (506)
166 PRK09700 D-allose transporter 99.7 4.9E-17 1.1E-21 188.2 14.7 158 478-640 6-221 (510)
167 cd03244 ABCC_MRP_domain2 Domai 99.7 3.7E-17 8E-22 168.7 12.2 150 478-631 3-204 (221)
168 TIGR02769 nickel_nikE nickel i 99.7 7.2E-17 1.6E-21 171.7 14.6 139 493-632 23-219 (265)
169 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 6E-17 1.3E-21 169.1 13.4 137 494-632 16-205 (238)
170 cd03248 ABCC_TAP TAP, the Tran 99.7 6.1E-17 1.3E-21 167.8 13.0 153 476-631 10-215 (226)
171 COG1122 CbiO ABC-type cobalt t 99.7 3.1E-17 6.7E-22 172.1 10.9 149 478-630 4-204 (235)
172 PRK10070 glycine betaine trans 99.7 6.5E-17 1.4E-21 181.8 14.3 141 493-634 40-235 (400)
173 PRK13651 cobalt transporter AT 99.7 6.7E-17 1.4E-21 175.9 13.9 161 478-639 3-240 (305)
174 PRK10938 putative molybdenum t 99.7 5.1E-17 1.1E-21 187.1 13.7 152 478-634 4-205 (490)
175 cd03233 ABC_PDR_domain1 The pl 99.7 2.9E-17 6.2E-22 168.1 10.3 156 478-634 4-190 (202)
176 PRK14268 phosphate ABC transpo 99.7 7.2E-17 1.6E-21 171.0 13.7 152 477-634 12-223 (258)
177 PRK10418 nikD nickel transport 99.7 8.2E-17 1.8E-21 170.2 14.0 151 478-634 5-211 (254)
178 PRK13640 cbiO cobalt transport 99.7 5.3E-17 1.1E-21 174.5 12.8 154 477-633 5-212 (282)
179 TIGR00972 3a0107s01c2 phosphat 99.7 8E-17 1.7E-21 169.3 13.9 151 478-634 2-213 (247)
180 PRK11022 dppD dipeptide transp 99.7 8.2E-17 1.8E-21 176.7 14.4 162 478-640 4-230 (326)
181 TIGR01184 ntrCD nitrate transp 99.7 4.9E-17 1.1E-21 169.6 12.0 131 503-634 11-185 (230)
182 PRK14242 phosphate transporter 99.7 9.4E-17 2E-21 169.3 14.3 150 478-633 7-217 (253)
183 PRK11701 phnK phosphonate C-P 99.7 7.4E-17 1.6E-21 170.8 13.3 159 477-640 6-228 (258)
184 PRK13649 cbiO cobalt transport 99.7 8.5E-17 1.8E-21 172.4 13.8 156 478-634 3-215 (280)
185 PRK13541 cytochrome c biogenes 99.7 6.4E-17 1.4E-21 164.3 12.2 148 478-631 2-189 (195)
186 PRK13646 cbiO cobalt transport 99.7 9E-17 2E-21 173.1 14.1 156 478-634 3-216 (286)
187 TIGR02324 CP_lyasePhnL phospho 99.7 9.5E-17 2.1E-21 166.1 13.6 138 494-632 21-217 (224)
188 PRK13634 cbiO cobalt transport 99.7 9.1E-17 2E-21 173.4 13.9 162 478-640 3-222 (290)
189 PRK15093 antimicrobial peptide 99.7 9.9E-17 2.2E-21 176.3 14.4 156 478-634 4-229 (330)
190 cd03253 ABCC_ATM1_transporter 99.7 9.2E-17 2E-21 167.3 13.4 138 493-632 13-203 (236)
191 TIGR02323 CP_lyasePhnK phospho 99.7 7.9E-17 1.7E-21 169.8 13.0 151 478-633 4-218 (253)
192 COG1117 PstB ABC-type phosphat 99.7 4.9E-17 1.1E-21 165.2 10.5 147 477-629 7-212 (253)
193 PRK09580 sufC cysteine desulfu 99.7 1.2E-16 2.7E-21 167.6 13.9 148 478-630 2-210 (248)
194 PRK14275 phosphate ABC transpo 99.7 1.4E-16 3.1E-21 171.6 14.7 154 474-633 36-250 (286)
195 TIGR01277 thiQ thiamine ABC tr 99.7 9.3E-17 2E-21 165.2 12.7 136 497-633 14-198 (213)
196 cd03300 ABC_PotA_N PotA is an 99.7 1.3E-16 2.8E-21 166.4 13.9 140 493-633 12-200 (232)
197 PRK15112 antimicrobial peptide 99.7 1E-16 2.2E-21 170.9 13.4 152 477-629 4-214 (267)
198 PRK14237 phosphate transporter 99.7 2E-16 4.4E-21 168.6 15.4 159 475-639 18-237 (267)
199 COG1119 ModF ABC-type molybden 99.7 7.7E-17 1.7E-21 167.1 11.8 151 474-629 28-237 (257)
200 cd03234 ABCG_White The White s 99.7 1.1E-16 2.4E-21 166.0 13.0 140 494-634 20-214 (226)
201 PRK14245 phosphate ABC transpo 99.7 1.9E-16 4.2E-21 166.7 14.9 157 478-640 4-221 (250)
202 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 5.1E-17 1.1E-21 158.0 9.7 114 494-629 13-131 (144)
203 PRK10419 nikE nickel transport 99.7 1.6E-16 3.5E-21 169.5 14.0 156 478-634 4-222 (268)
204 CHL00131 ycf16 sulfate ABC tra 99.7 1.6E-16 3.4E-21 167.3 13.7 149 477-630 7-216 (252)
205 PRK13642 cbiO cobalt transport 99.7 1.4E-16 3.1E-21 170.7 13.5 154 478-633 5-209 (277)
206 COG3840 ThiQ ABC-type thiamine 99.7 8.2E-17 1.8E-21 160.0 10.7 138 503-642 25-208 (231)
207 PRK15079 oligopeptide ABC tran 99.7 1.9E-16 4E-21 174.3 14.7 157 477-634 8-232 (331)
208 PRK10744 pstB phosphate transp 99.7 1.8E-16 4E-21 168.1 14.1 152 476-633 12-224 (260)
209 PRK14247 phosphate ABC transpo 99.7 2.2E-16 4.7E-21 166.2 14.5 150 478-633 4-214 (250)
210 PRK11288 araG L-arabinose tran 99.7 1.4E-16 3E-21 184.1 14.3 152 478-634 5-210 (501)
211 PRK14273 phosphate ABC transpo 99.7 1.9E-16 4E-21 167.2 14.0 151 477-633 7-218 (254)
212 PRK14235 phosphate transporter 99.7 2.1E-16 4.6E-21 168.4 14.5 147 477-629 19-226 (267)
213 cd03237 ABC_RNaseL_inhibitor_d 99.7 8.6E-17 1.9E-21 169.9 11.4 126 503-629 25-180 (246)
214 cd03222 ABC_RNaseL_inhibitor T 99.7 1.1E-16 2.4E-21 161.2 11.6 120 493-629 12-136 (177)
215 PRK13546 teichoic acids export 99.7 9E-17 2E-21 171.5 11.5 137 492-629 35-207 (264)
216 PRK13549 xylose transporter AT 99.7 2.7E-16 5.8E-21 182.0 16.2 155 477-633 259-474 (506)
217 COG1135 AbcC ABC-type metal io 99.7 1.3E-16 2.8E-21 169.9 12.4 151 478-629 2-206 (339)
218 PRK11308 dppF dipeptide transp 99.7 2.3E-16 5.1E-21 173.2 14.8 160 477-637 5-228 (327)
219 TIGR03415 ABC_choXWV_ATP choli 99.7 1E-16 2.2E-21 179.2 12.2 151 492-642 35-243 (382)
220 PRK13547 hmuV hemin importer A 99.7 1.8E-16 3.9E-21 169.8 13.5 150 478-632 2-223 (272)
221 PRK10771 thiQ thiamine transpo 99.7 1.8E-16 3.9E-21 165.1 13.2 133 499-632 17-198 (232)
222 PRK14248 phosphate ABC transpo 99.7 2.3E-16 5.1E-21 168.0 14.3 153 475-633 19-232 (268)
223 PRK13645 cbiO cobalt transport 99.7 1.6E-16 3.5E-21 171.2 13.1 157 477-634 6-221 (289)
224 TIGR02633 xylG D-xylose ABC tr 99.7 1.6E-16 3.4E-21 183.6 13.9 152 478-634 2-211 (500)
225 TIGR02770 nickel_nikD nickel i 99.7 1.4E-16 3.1E-21 165.8 12.3 137 497-634 2-196 (230)
226 COG4598 HisP ABC-type histidin 99.7 7.8E-17 1.7E-21 159.7 9.7 171 477-654 6-239 (256)
227 PRK13631 cbiO cobalt transport 99.7 2.6E-16 5.6E-21 172.4 14.5 164 475-639 19-251 (320)
228 PRK14267 phosphate ABC transpo 99.7 2.6E-16 5.6E-21 165.9 13.9 151 478-634 5-218 (253)
229 PRK14274 phosphate ABC transpo 99.7 3.5E-16 7.5E-21 165.8 14.9 152 477-634 12-224 (259)
230 PRK03695 vitamin B12-transport 99.7 1.9E-16 4.2E-21 167.0 12.8 137 496-633 11-202 (248)
231 PRK14256 phosphate ABC transpo 99.7 3.2E-16 6.9E-21 165.3 14.4 152 477-634 4-217 (252)
232 PRK14269 phosphate ABC transpo 99.7 2.7E-16 5.9E-21 165.4 13.8 150 478-633 3-210 (246)
233 TIGR03269 met_CoM_red_A2 methy 99.7 2.1E-16 4.6E-21 183.4 14.1 150 479-633 2-238 (520)
234 PRK09473 oppD oligopeptide tra 99.7 2.4E-16 5.2E-21 173.3 13.8 158 477-635 12-233 (330)
235 PRK10982 galactose/methyl gala 99.7 1.7E-16 3.7E-21 182.9 13.1 147 493-640 10-210 (491)
236 cd03369 ABCC_NFT1 Domain 2 of 99.7 3.8E-16 8.3E-21 159.8 13.9 150 477-632 6-191 (207)
237 PRK14251 phosphate ABC transpo 99.7 3E-16 6.4E-21 165.3 13.4 151 478-634 5-216 (251)
238 TIGR02633 xylG D-xylose ABC tr 99.7 3.9E-16 8.4E-21 180.3 15.6 156 477-634 257-473 (500)
239 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.8E-16 4E-21 155.3 11.0 129 494-630 12-145 (157)
240 PRK09700 D-allose transporter 99.7 3.9E-16 8.5E-21 180.7 15.6 146 477-629 265-473 (510)
241 PRK14240 phosphate transporter 99.7 3.7E-16 8E-21 164.5 13.8 150 478-633 4-214 (250)
242 cd03297 ABC_ModC_molybdenum_tr 99.7 2.9E-16 6.3E-21 161.5 12.6 134 499-633 16-201 (214)
243 PRK14241 phosphate transporter 99.7 3.9E-16 8.4E-21 165.3 13.8 150 478-633 5-216 (258)
244 PRK14259 phosphate ABC transpo 99.7 3E-16 6.6E-21 167.5 13.0 148 476-629 12-217 (269)
245 PRK14262 phosphate ABC transpo 99.7 4.6E-16 9.9E-21 163.8 14.2 150 478-633 4-214 (250)
246 COG1129 MglA ABC-type sugar tr 99.7 3.9E-16 8.5E-21 177.3 14.2 160 477-641 8-222 (500)
247 PRK11144 modC molybdate transp 99.7 3E-16 6.5E-21 174.0 12.8 141 499-640 16-205 (352)
248 PRK14270 phosphate ABC transpo 99.7 5.1E-16 1.1E-20 163.6 14.0 151 478-634 5-216 (251)
249 cd03290 ABCC_SUR1_N The SUR do 99.7 2.4E-16 5.2E-21 162.6 11.2 138 493-630 13-207 (218)
250 PRK10938 putative molybdenum t 99.7 3.1E-16 6.7E-21 180.7 13.3 149 476-629 259-466 (490)
251 PRK14244 phosphate ABC transpo 99.7 5.5E-16 1.2E-20 163.4 13.9 150 479-634 7-218 (251)
252 PRK14239 phosphate transporter 99.7 5.2E-16 1.1E-20 163.4 13.6 151 478-634 6-217 (252)
253 PRK10261 glutathione transport 99.7 3.4E-16 7.3E-21 185.6 13.5 169 473-642 8-247 (623)
254 TIGR02142 modC_ABC molybdenum 99.7 3.9E-16 8.5E-21 173.2 13.1 143 499-642 15-210 (354)
255 cd03289 ABCC_CFTR2 The CFTR su 99.7 4.1E-16 8.8E-21 167.4 12.6 151 478-632 3-204 (275)
256 cd03291 ABCC_CFTR1 The CFTR su 99.7 2.6E-16 5.7E-21 169.5 11.0 149 476-631 38-225 (282)
257 PRK14255 phosphate ABC transpo 99.7 7.8E-16 1.7E-20 162.2 14.3 151 478-634 6-217 (252)
258 PRK14246 phosphate ABC transpo 99.7 6.7E-16 1.4E-20 163.9 13.7 150 478-633 11-221 (257)
259 PRK14272 phosphate ABC transpo 99.7 8.5E-16 1.8E-20 161.8 14.3 157 478-640 5-223 (252)
260 cd03299 ABC_ModC_like Archeal 99.7 5.9E-16 1.3E-20 161.8 13.0 137 496-633 14-199 (235)
261 PRK14265 phosphate ABC transpo 99.7 6E-16 1.3E-20 165.7 13.0 150 477-632 20-228 (274)
262 PRK15177 Vi polysaccharide exp 99.7 1.9E-16 4.1E-21 163.6 8.9 135 496-633 2-172 (213)
263 PRK14253 phosphate ABC transpo 99.7 9.8E-16 2.1E-20 161.2 14.4 150 478-633 4-213 (249)
264 TIGR01257 rim_protein retinal- 99.7 2.3E-16 5.1E-21 203.0 11.6 166 477-645 1937-2151(2272)
265 COG1124 DppF ABC-type dipeptid 99.7 3.7E-16 8E-21 162.0 10.8 164 478-642 4-220 (252)
266 PRK14261 phosphate ABC transpo 99.7 7.7E-16 1.7E-20 162.4 13.5 150 478-633 7-217 (253)
267 cd03288 ABCC_SUR2 The SUR doma 99.7 9.8E-16 2.1E-20 162.3 14.3 154 475-632 17-222 (257)
268 COG4619 ABC-type uncharacteriz 99.7 3.7E-16 7.9E-21 153.6 10.1 148 491-638 13-208 (223)
269 PRK14254 phosphate ABC transpo 99.7 6.1E-16 1.3E-20 166.7 12.8 149 475-629 37-243 (285)
270 PRK13545 tagH teichoic acids e 99.7 3.2E-16 6.9E-21 179.7 11.0 155 478-634 22-213 (549)
271 PRK14249 phosphate ABC transpo 99.7 9.5E-16 2.1E-20 161.6 13.8 146 478-629 5-210 (251)
272 PRK15134 microcin C ABC transp 99.7 5.5E-16 1.2E-20 180.4 13.1 164 477-641 5-234 (529)
273 PRK15439 autoinducer 2 ABC tra 99.6 7.2E-16 1.6E-20 178.7 13.8 143 477-629 268-467 (510)
274 PRK14238 phosphate transporter 99.6 9.6E-16 2.1E-20 163.8 13.6 152 477-634 24-236 (271)
275 cd03236 ABC_RNaseL_inhibitor_d 99.6 7.3E-16 1.6E-20 163.8 12.5 135 494-629 14-203 (255)
276 PRK10982 galactose/methyl gala 99.6 1.1E-15 2.5E-20 176.1 14.8 150 477-633 250-460 (491)
277 TIGR03771 anch_rpt_ABC anchore 99.6 1.1E-15 2.3E-20 158.8 13.0 129 503-632 6-181 (223)
278 PRK14271 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 163.7 13.9 152 477-634 21-232 (276)
279 TIGR03269 met_CoM_red_A2 methy 99.6 1.2E-15 2.7E-20 177.0 15.0 152 477-629 279-492 (520)
280 PRK15064 ABC transporter ATP-b 99.6 6.9E-16 1.5E-20 179.6 12.7 144 478-629 2-216 (530)
281 PRK11288 araG L-arabinose tran 99.6 1.1E-15 2.4E-20 176.7 14.2 144 477-629 257-460 (501)
282 TIGR01257 rim_protein retinal- 99.6 5.6E-16 1.2E-20 199.6 12.8 164 477-644 928-1140(2272)
283 PRK14264 phosphate ABC transpo 99.6 1.3E-15 2.8E-20 165.7 13.6 148 476-629 44-263 (305)
284 PRK14252 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 161.3 13.9 152 477-634 16-230 (265)
285 PRK14236 phosphate transporter 99.6 1.7E-15 3.7E-20 161.9 14.2 154 475-634 23-237 (272)
286 PRK13409 putative ATPase RIL; 99.6 9.3E-16 2E-20 180.5 13.2 147 477-629 340-518 (590)
287 PRK14243 phosphate transporter 99.6 1.6E-15 3.4E-20 161.5 13.2 147 477-629 10-214 (264)
288 PRK15134 microcin C ABC transp 99.6 1.4E-15 3.1E-20 176.9 13.8 157 477-634 275-496 (529)
289 PRK14260 phosphate ABC transpo 99.6 1.7E-15 3.7E-20 160.6 13.1 147 477-629 7-213 (259)
290 COG4181 Predicted ABC-type tra 99.6 1.8E-15 3.8E-20 149.3 12.1 165 477-641 6-223 (228)
291 PRK10762 D-ribose transporter 99.6 1.8E-15 4E-20 174.9 14.3 143 477-629 257-459 (501)
292 PRK10636 putative ABC transpor 99.6 1.2E-15 2.5E-20 181.4 12.8 144 478-629 2-210 (638)
293 PRK14258 phosphate ABC transpo 99.6 2.1E-15 4.6E-20 160.1 13.2 152 477-633 7-220 (261)
294 PRK10261 glutathione transport 99.6 2.2E-15 4.8E-20 178.7 14.6 156 477-633 313-533 (623)
295 COG3845 ABC-type uncharacteriz 99.6 2.7E-15 5.9E-20 167.9 14.3 162 477-643 4-219 (501)
296 COG0396 sufC Cysteine desulfur 99.6 2.9E-15 6.4E-20 154.0 13.3 151 477-631 3-210 (251)
297 PRK11819 putative ABC transpor 99.6 4.9E-16 1.1E-20 181.9 8.7 144 478-629 7-224 (556)
298 PRK14263 phosphate ABC transpo 99.6 2.7E-15 5.8E-20 159.6 13.3 149 478-632 9-216 (261)
299 PRK14266 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 158.3 12.8 147 478-630 4-210 (250)
300 COG4525 TauB ABC-type taurine 99.6 1.8E-15 3.8E-20 152.0 10.4 137 494-630 18-198 (259)
301 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 7.8E-16 1.7E-20 180.0 8.8 144 478-629 5-222 (552)
302 COG4586 ABC-type uncharacteriz 99.6 6.5E-16 1.4E-20 161.9 7.1 151 495-645 38-238 (325)
303 PRK15064 ABC transporter ATP-b 99.6 2.3E-15 5E-20 175.2 12.2 146 476-629 318-499 (530)
304 PRK10535 macrolide transporter 99.6 5E-15 1.1E-19 176.3 14.8 165 478-643 5-222 (648)
305 PRK10636 putative ABC transpor 99.6 2.9E-15 6.3E-20 178.1 12.3 147 475-629 310-491 (638)
306 PRK10522 multidrug transporter 99.6 6.1E-15 1.3E-19 172.3 14.2 161 477-640 322-525 (547)
307 PRK13409 putative ATPase RIL; 99.6 4.5E-15 9.8E-20 174.7 13.1 135 493-629 86-275 (590)
308 COG4175 ProV ABC-type proline/ 99.6 3.8E-15 8.3E-20 158.8 10.9 145 496-640 43-241 (386)
309 COG0444 DppD ABC-type dipeptid 99.6 3.8E-15 8.2E-20 160.3 11.0 155 478-633 2-223 (316)
310 PRK14257 phosphate ABC transpo 99.6 6.1E-15 1.3E-19 162.2 13.0 161 476-640 79-300 (329)
311 COG4559 ABC-type hemin transpo 99.6 6.3E-15 1.4E-19 149.9 11.9 149 492-642 12-219 (259)
312 COG4604 CeuD ABC-type enteroch 99.6 3.1E-15 6.6E-20 150.6 8.6 147 478-629 2-200 (252)
313 PLN03211 ABC transporter G-25; 99.6 3.2E-15 6.9E-20 178.1 10.4 150 493-643 80-286 (659)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 5.3E-15 1.1E-19 173.1 11.8 146 476-629 321-504 (552)
315 COG4133 CcmA ABC-type transpor 99.6 9.3E-15 2E-19 146.3 11.3 133 492-625 13-190 (209)
316 TIGR01842 type_I_sec_PrtD type 99.6 5.3E-14 1.2E-18 164.3 19.5 155 477-634 316-523 (544)
317 COG1123 ATPase components of v 99.6 1.3E-14 2.8E-19 166.0 13.9 165 477-642 5-233 (539)
318 PRK11819 putative ABC transpor 99.6 2.7E-15 5.9E-20 175.7 8.6 146 476-629 323-506 (556)
319 COG1134 TagH ABC-type polysacc 99.6 3E-15 6.6E-20 155.4 7.8 151 493-644 39-227 (249)
320 PRK11147 ABC transporter ATPas 99.6 7.4E-15 1.6E-19 174.6 12.0 142 478-629 4-217 (635)
321 PRK11147 ABC transporter ATPas 99.6 8.5E-15 1.8E-19 174.1 11.4 147 475-629 317-501 (635)
322 cd03270 ABC_UvrA_I The excisio 99.6 1.7E-14 3.8E-19 150.4 12.4 74 559-633 131-207 (226)
323 PRK13657 cyclic beta-1,2-gluca 99.6 1.5E-14 3.2E-19 170.4 12.9 153 477-634 334-539 (588)
324 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 1.3E-14 2.9E-19 174.3 12.8 159 477-641 477-688 (710)
325 TIGR01187 potA spermidine/putr 99.6 1.5E-14 3.3E-19 158.8 11.8 134 508-642 1-179 (325)
326 TIGR01194 cyc_pep_trnsptr cycl 99.5 3.1E-14 6.7E-19 166.8 14.6 163 476-638 336-544 (555)
327 PLN03073 ABC transporter F fam 99.5 1.8E-14 3.9E-19 172.8 12.6 146 477-629 508-688 (718)
328 PRK10790 putative multidrug tr 99.5 2.3E-14 4.9E-19 168.9 13.2 153 477-634 340-544 (592)
329 COG2274 SunT ABC-type bacterio 99.5 6.4E-14 1.4E-18 167.1 17.1 162 477-642 471-685 (709)
330 TIGR02203 MsbA_lipidA lipid A 99.5 1.2E-13 2.7E-18 161.6 19.2 157 477-637 330-540 (571)
331 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.2E-13 2.6E-18 165.5 19.5 159 477-641 451-661 (686)
332 PRK11174 cysteine/glutathione 99.5 2.3E-14 5E-19 168.6 13.1 152 477-635 349-554 (588)
333 TIGR01192 chvA glucan exporter 99.5 2.3E-14 5E-19 168.9 13.0 153 477-634 334-539 (585)
334 KOG0059 Lipid exporter ABCA1 a 99.5 5.7E-15 1.2E-19 181.1 7.5 173 476-652 563-786 (885)
335 TIGR03375 type_I_sec_LssB type 99.5 2.8E-14 6.1E-19 171.2 13.3 155 477-635 463-670 (694)
336 COG0488 Uup ATPase components 99.5 3E-14 6.5E-19 164.9 12.9 143 478-629 4-214 (530)
337 PRK11176 lipid transporter ATP 99.5 1.5E-13 3.3E-18 161.4 19.0 157 477-637 341-551 (582)
338 PRK11160 cysteine/glutathione 99.5 2.5E-14 5.5E-19 168.1 12.2 154 477-634 338-543 (574)
339 TIGR02204 MsbA_rel ABC transpo 99.5 4.1E-14 8.9E-19 165.9 13.5 161 477-640 337-550 (576)
340 cd03278 ABC_SMC_barmotin Barmo 99.5 3.9E-14 8.4E-19 145.0 11.5 123 503-631 23-182 (197)
341 COG0488 Uup ATPase components 99.5 3.3E-13 7.1E-18 156.4 20.0 149 474-630 318-501 (530)
342 TIGR00958 3a01208 Conjugate Tr 99.5 2.2E-13 4.8E-18 164.0 19.3 161 477-642 478-691 (711)
343 TIGR00954 3a01203 Peroxysomal 99.5 3.8E-14 8.2E-19 169.2 12.5 149 477-632 451-646 (659)
344 TIGR01846 type_I_sec_HlyB type 99.5 5.2E-14 1.1E-18 168.9 13.5 160 477-640 455-667 (694)
345 PRK10789 putative multidrug tr 99.5 5.1E-14 1.1E-18 165.4 13.0 153 477-633 313-518 (569)
346 TIGR02857 CydD thiol reductant 99.5 2.9E-13 6.4E-18 157.3 18.7 152 477-632 320-524 (529)
347 TIGR00956 3a01205 Pleiotropic 99.5 7.1E-14 1.5E-18 178.4 14.7 156 478-634 760-973 (1394)
348 TIGR00955 3a01204 The Eye Pigm 99.5 5.5E-14 1.2E-18 166.7 12.7 152 492-644 36-247 (617)
349 KOG0057 Mitochondrial Fe/S clu 99.5 2.3E-13 5E-18 153.8 16.9 163 477-644 351-565 (591)
350 TIGR01193 bacteriocin_ABC ABC- 99.5 5.2E-14 1.1E-18 169.2 12.6 157 477-639 473-683 (708)
351 COG4161 ArtP ABC-type arginine 99.5 1.3E-13 2.8E-18 134.9 12.9 160 478-643 3-220 (242)
352 PLN03073 ABC transporter F fam 99.5 4.4E-14 9.5E-19 169.6 11.8 145 477-629 177-405 (718)
353 COG4608 AppF ABC-type oligopep 99.5 1.3E-13 2.8E-18 145.7 13.5 154 478-632 5-177 (268)
354 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.4E-13 3E-18 142.5 13.2 148 477-633 5-198 (212)
355 TIGR02868 CydC thiol reductant 99.5 3.3E-14 7.2E-19 165.2 9.4 144 477-625 334-529 (529)
356 COG4674 Uncharacterized ABC-ty 99.5 3.6E-14 7.7E-19 142.7 7.9 147 478-630 6-211 (249)
357 COG1101 PhnK ABC-type uncharac 99.5 1.1E-13 2.4E-18 141.2 10.7 142 492-633 17-218 (263)
358 PLN03140 ABC transporter G fam 99.5 1.3E-13 2.9E-18 175.9 13.6 144 493-637 892-1093(1470)
359 cd03272 ABC_SMC3_euk Eukaryoti 99.5 2.6E-13 5.7E-18 142.0 13.5 71 562-634 155-230 (243)
360 COG4107 PhnK ABC-type phosphon 99.5 2.4E-13 5.2E-18 134.5 12.2 149 478-631 7-218 (258)
361 COG1123 ATPase components of v 99.5 1.8E-13 4E-18 156.7 12.9 154 477-630 280-495 (539)
362 COG4988 CydD ABC-type transpor 99.5 9.1E-13 2E-17 150.7 17.5 161 477-642 318-532 (559)
363 cd03279 ABC_sbcCD SbcCD and ot 99.5 3.1E-13 6.6E-18 139.6 11.3 70 560-630 118-198 (213)
364 COG4148 ModC ABC-type molybdat 99.5 1.2E-13 2.5E-18 145.5 7.9 140 504-644 25-209 (352)
365 PTZ00265 multidrug resistance 99.4 1.6E-13 3.4E-18 175.7 10.6 75 564-639 578-654 (1466)
366 COG4987 CydC ABC-type transpor 99.4 3E-13 6.5E-18 152.8 11.5 164 477-644 336-552 (573)
367 TIGR01271 CFTR_protein cystic 99.4 1.5E-13 3.3E-18 176.6 9.4 147 494-641 439-624 (1490)
368 COG1132 MdlB ABC-type multidru 99.4 9.1E-13 2E-17 154.6 13.0 160 477-642 328-541 (567)
369 PTZ00243 ABC transporter; Prov 99.4 6.6E-13 1.4E-17 171.1 12.7 140 493-633 672-850 (1560)
370 COG4136 ABC-type uncharacteriz 99.4 6.5E-13 1.4E-17 128.8 8.8 138 492-629 13-199 (213)
371 cd03240 ABC_Rad50 The catalyti 99.4 5.9E-13 1.3E-17 136.9 9.1 133 499-632 17-190 (204)
372 TIGR00957 MRP_assoc_pro multi 99.4 4.9E-13 1.1E-17 172.4 10.5 156 477-634 636-831 (1522)
373 KOG0055 Multidrug/pheromone ex 99.4 5.8E-13 1.2E-17 162.7 10.3 165 476-644 349-567 (1228)
374 KOG0061 Transporter, ABC super 99.4 1.3E-12 2.7E-17 154.7 11.9 148 493-641 42-248 (613)
375 PLN03130 ABC transporter C fam 99.4 7.2E-13 1.6E-17 171.2 10.4 157 477-635 614-810 (1622)
376 cd03271 ABC_UvrA_II The excisi 99.4 3.2E-12 6.9E-17 136.4 13.5 73 559-632 163-239 (261)
377 PLN03232 ABC transporter C fam 99.4 3E-12 6.6E-17 164.9 15.8 159 477-637 614-812 (1495)
378 TIGR00956 3a01205 Pleiotropic 99.4 1.7E-12 3.7E-17 166.0 12.7 148 493-641 73-288 (1394)
379 COG4778 PhnL ABC-type phosphon 99.4 6.9E-13 1.5E-17 130.9 6.7 152 477-629 4-216 (235)
380 COG4618 ArpD ABC-type protease 99.4 4E-12 8.8E-17 142.8 13.3 155 477-634 334-541 (580)
381 PLN03140 ABC transporter G fam 99.4 1.5E-12 3.2E-17 166.5 10.6 76 566-642 337-416 (1470)
382 cd03276 ABC_SMC6_euk Eukaryoti 99.4 4E-12 8.7E-17 130.3 11.7 131 500-630 17-181 (198)
383 KOG0927 Predicted transporter 99.3 7.2E-12 1.6E-16 141.5 14.3 145 478-630 390-571 (614)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.3 3.5E-12 7.6E-17 134.7 11.2 68 564-632 154-226 (247)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.3 4.9E-12 1.1E-16 133.8 12.2 70 563-634 164-238 (251)
386 PLN03232 ABC transporter C fam 99.3 1.7E-11 3.7E-16 158.1 19.1 162 477-642 1234-1447(1495)
387 PTZ00265 multidrug resistance 99.3 4.7E-12 1E-16 162.4 13.3 72 564-636 1357-1430(1466)
388 KOG0062 ATPase component of AB 99.3 3.9E-12 8.5E-17 142.9 9.4 134 492-629 91-259 (582)
389 PLN03130 ABC transporter C fam 99.3 6.9E-12 1.5E-16 162.2 12.9 163 477-643 1237-1451(1622)
390 cd03239 ABC_SMC_head The struc 99.3 1E-11 2.3E-16 125.3 11.3 123 505-633 24-166 (178)
391 TIGR01271 CFTR_protein cystic 99.3 8.6E-12 1.9E-16 160.6 13.3 154 477-634 1217-1421(1490)
392 TIGR00957 MRP_assoc_pro multi 99.3 4.4E-11 9.5E-16 154.6 19.5 161 476-640 1283-1495(1522)
393 PTZ00243 ABC transporter; Prov 99.3 9.8E-12 2.1E-16 160.5 13.1 162 477-642 1308-1522(1560)
394 KOG0058 Peptide exporter, ABC 99.2 3.1E-11 6.8E-16 140.8 11.9 156 476-634 464-672 (716)
395 PF00005 ABC_tran: ABC transpo 99.2 9.2E-12 2E-16 118.5 5.8 97 497-593 1-137 (137)
396 COG4138 BtuD ABC-type cobalami 99.2 8.2E-12 1.8E-16 123.9 5.4 128 500-628 22-195 (248)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.2 4.4E-11 9.6E-16 124.0 10.7 64 563-627 124-194 (213)
398 KOG0056 Heavy metal exporter H 99.2 1.3E-10 2.8E-15 129.7 14.0 149 476-632 536-740 (790)
399 COG4172 ABC-type uncharacteriz 99.2 6.6E-11 1.4E-15 130.0 10.1 163 478-641 7-235 (534)
400 KOG0927 Predicted transporter 99.2 5.9E-11 1.3E-15 134.3 9.6 143 477-628 75-282 (614)
401 COG4615 PvdE ABC-type sideroph 99.2 3.3E-10 7.2E-15 124.1 14.9 164 477-643 322-527 (546)
402 COG4172 ABC-type uncharacteriz 99.2 4.4E-11 9.6E-16 131.3 7.5 135 494-629 300-491 (534)
403 KOG0066 eIF2-interacting prote 99.1 1.1E-10 2.3E-15 128.6 9.7 144 481-629 587-765 (807)
404 COG1245 Predicted ATPase, RNas 99.1 1.3E-10 2.9E-15 129.1 9.1 128 503-630 367-521 (591)
405 COG4178 ABC-type uncharacteriz 99.1 1.3E-09 2.8E-14 126.9 16.4 152 475-632 390-581 (604)
406 KOG0055 Multidrug/pheromone ex 99.1 3.4E-10 7.3E-15 138.9 12.1 164 477-645 987-1205(1228)
407 smart00533 MUTSd DNA-binding d 99.1 2E-08 4.4E-13 108.5 24.2 288 141-487 3-304 (308)
408 TIGR00630 uvra excinuclease AB 99.1 1E-09 2.2E-14 134.7 13.7 72 560-632 823-898 (924)
409 KOG0054 Multidrug resistance-a 99.1 1.9E-09 4.2E-14 134.9 16.3 164 474-640 515-718 (1381)
410 COG1245 Predicted ATPase, RNas 99.0 7.1E-10 1.5E-14 123.4 10.4 131 503-634 100-282 (591)
411 PRK00349 uvrA excinuclease ABC 99.0 1.2E-09 2.6E-14 134.3 13.3 72 560-632 825-900 (943)
412 PRK00635 excinuclease ABC subu 99.0 5.7E-10 1.2E-14 142.8 10.7 74 560-634 804-881 (1809)
413 COG2401 ABC-type ATPase fused 99.0 1.1E-09 2.5E-14 120.6 10.6 137 493-629 395-572 (593)
414 KOG0065 Pleiotropic drug resis 99.0 3.3E-10 7.2E-15 139.0 6.2 133 493-626 803-991 (1391)
415 KOG2355 Predicted ABC-type tra 98.9 3.5E-09 7.5E-14 107.8 9.7 154 476-632 12-216 (291)
416 cd03241 ABC_RecN RecN ATPase i 98.9 2.7E-09 5.8E-14 114.8 8.4 66 566-633 171-241 (276)
417 COG3910 Predicted ATPase [Gene 98.9 7.4E-09 1.6E-13 104.3 9.8 55 576-631 140-194 (233)
418 COG4167 SapF ABC-type antimicr 98.8 1.6E-08 3.6E-13 101.4 10.1 55 576-630 161-215 (267)
419 COG4170 SapD ABC-type antimicr 98.8 1.8E-08 3.9E-13 102.9 9.8 52 576-628 170-222 (330)
420 KOG0060 Long-chain acyl-CoA tr 98.7 2.3E-07 5E-12 106.4 17.0 151 476-632 432-634 (659)
421 COG5265 ATM1 ABC-type transpor 98.7 4.5E-08 9.7E-13 108.7 10.2 156 478-641 263-474 (497)
422 PF02463 SMC_N: RecF/RecN/SMC 98.7 1.1E-07 2.3E-12 98.3 11.9 53 579-633 155-207 (220)
423 COG1129 MglA ABC-type sugar tr 98.7 1.8E-07 3.9E-12 107.4 14.6 158 476-643 262-480 (500)
424 KOG0064 Peroxisomal long-chain 98.7 2.8E-07 6E-12 104.5 14.4 136 491-630 492-674 (728)
425 TIGR02858 spore_III_AA stage I 98.6 9E-08 2E-12 102.9 9.4 109 504-630 112-234 (270)
426 KOG0054 Multidrug resistance-a 98.6 1.8E-07 3.8E-12 117.8 12.5 153 477-633 1138-1342(1381)
427 COG0178 UvrA Excinuclease ATPa 98.6 1.9E-07 4.2E-12 110.4 11.1 55 579-634 840-894 (935)
428 KOG0066 eIF2-interacting prote 98.6 8.8E-08 1.9E-12 106.1 6.5 50 576-629 424-473 (807)
429 PRK08533 flagellar accessory p 98.5 3.8E-07 8.3E-12 95.8 10.5 124 500-626 21-163 (230)
430 PF13304 AAA_21: AAA domain; P 98.5 2.4E-07 5.2E-12 93.4 8.2 61 567-628 238-302 (303)
431 PRK00635 excinuclease ABC subu 98.5 2E-07 4.3E-12 120.1 8.8 71 564-635 1698-1772(1809)
432 cd01120 RecA-like_NTPases RecA 98.4 1.2E-06 2.6E-11 84.1 10.8 122 505-627 1-139 (165)
433 KOG0062 ATPase component of AB 98.4 5.1E-07 1.1E-11 102.5 8.5 145 478-630 363-544 (582)
434 cd01124 KaiC KaiC is a circadi 98.4 1.7E-06 3.6E-11 86.5 9.6 47 580-627 93-142 (187)
435 PRK13695 putative NTPase; Prov 98.3 1.9E-06 4E-11 86.2 9.3 50 580-632 94-143 (174)
436 cd03242 ABC_RecF RecF is a rec 98.3 9.3E-07 2E-11 94.9 6.9 43 580-627 208-250 (270)
437 smart00382 AAA ATPases associa 98.3 9.1E-06 2E-10 74.7 11.6 116 503-624 2-125 (148)
438 KOG0217 Mismatch repair ATPase 98.2 1.5E-08 3.3E-13 120.9 -9.9 295 491-791 742-1105(1125)
439 PRK06067 flagellar accessory p 98.1 9.4E-06 2E-10 85.0 10.1 125 501-627 23-167 (234)
440 TIGR00630 uvra excinuclease AB 98.1 1.1E-05 2.3E-10 99.9 10.2 83 551-634 472-558 (924)
441 PRK00349 uvrA excinuclease ABC 98.1 1.1E-05 2.5E-10 99.8 10.0 84 550-634 473-560 (943)
442 KOG0063 RNAse L inhibitor, ABC 98.0 7.8E-06 1.7E-10 91.2 6.2 128 503-630 367-522 (592)
443 cd01131 PilT Pilus retraction 98.0 2.6E-05 5.7E-10 80.0 9.2 109 504-629 2-113 (198)
444 TIGR02788 VirB11 P-type DNA tr 97.9 2.4E-05 5.2E-10 85.8 7.4 114 503-630 144-258 (308)
445 PRK07721 fliI flagellum-specif 97.8 8.8E-05 1.9E-09 85.1 10.6 144 493-643 145-333 (438)
446 TIGR00634 recN DNA repair prot 97.8 0.00016 3.5E-09 85.6 12.1 115 565-689 440-562 (563)
447 cd00009 AAA The AAA+ (ATPases 97.7 0.00012 2.6E-09 68.1 8.7 107 503-627 19-132 (151)
448 COG3845 ABC-type uncharacteriz 97.7 0.00043 9.3E-09 79.1 14.0 162 474-640 254-479 (501)
449 PRK10869 recombination and rep 97.7 0.00029 6.4E-09 83.3 12.5 115 565-689 430-552 (553)
450 cd01125 repA Hexameric Replica 97.6 0.0002 4.3E-09 75.4 9.6 46 580-626 109-160 (239)
451 KOG0065 Pleiotropic drug resis 97.6 6.1E-05 1.3E-09 94.0 6.4 132 494-625 128-321 (1391)
452 PRK04296 thymidine kinase; Pro 97.6 0.00033 7.2E-09 71.5 10.7 114 503-626 2-117 (190)
453 TIGR01420 pilT_fam pilus retra 97.6 0.00018 3.8E-09 80.2 9.2 111 503-628 122-233 (343)
454 PTZ00132 GTP-binding nuclear p 97.6 0.00015 3.3E-09 74.7 8.0 33 580-613 168-205 (215)
455 KOG0063 RNAse L inhibitor, ABC 97.5 0.0001 2.2E-09 82.6 5.7 64 569-633 218-281 (592)
456 PRK09183 transposase/IS protei 97.5 0.00032 6.9E-09 75.3 9.2 103 503-625 102-206 (259)
457 cd00820 PEPCK_HprK Phosphoenol 97.5 5.8E-05 1.3E-09 70.5 3.1 31 494-524 2-36 (107)
458 PRK14721 flhF flagellar biosyn 97.5 0.00075 1.6E-08 77.1 12.4 88 503-599 191-284 (420)
459 PRK06793 fliI flagellum-specif 97.4 0.00025 5.4E-09 81.1 7.3 135 493-631 143-292 (432)
460 PF00004 AAA: ATPase family as 97.4 0.00052 1.1E-08 64.0 8.1 101 506-628 1-115 (132)
461 cd02023 UMPK Uridine monophosp 97.4 0.00012 2.7E-09 74.5 3.7 23 505-527 1-23 (198)
462 PRK06893 DNA replication initi 97.3 0.00061 1.3E-08 71.6 8.5 95 504-627 40-136 (229)
463 cd01130 VirB11-like_ATPase Typ 97.3 0.00048 1E-08 69.9 7.3 26 503-528 25-50 (186)
464 PF13555 AAA_29: P-loop contai 97.3 0.00017 3.8E-09 60.9 3.4 26 503-528 23-48 (62)
465 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0026 5.7E-08 66.2 12.3 127 500-626 17-167 (229)
466 cd01121 Sms Sms (bacterial rad 97.3 0.0016 3.5E-08 73.4 11.1 118 503-625 82-210 (372)
467 PRK11889 flhF flagellar biosyn 97.2 0.0033 7.1E-08 71.2 13.1 87 504-596 242-334 (436)
468 TIGR00618 sbcc exonuclease Sbc 97.2 0.00057 1.2E-08 86.6 7.9 69 561-630 946-1025(1042)
469 PRK06995 flhF flagellar biosyn 97.2 0.0015 3.3E-08 75.8 10.5 85 503-594 256-346 (484)
470 PRK14722 flhF flagellar biosyn 97.2 0.0012 2.6E-08 74.4 9.1 85 503-594 137-227 (374)
471 PRK14723 flhF flagellar biosyn 97.2 0.0012 2.6E-08 80.1 9.6 89 503-598 185-280 (767)
472 PRK03918 chromosome segregatio 97.2 0.00076 1.6E-08 83.7 8.3 69 563-632 786-861 (880)
473 cd01393 recA_like RecA is a b 97.2 0.0029 6.3E-08 65.5 11.3 29 500-528 16-44 (226)
474 TIGR00416 sms DNA repair prote 97.2 0.0018 4E-08 74.9 10.7 119 503-626 94-223 (454)
475 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0023 5E-08 66.7 10.5 126 500-625 16-170 (235)
476 PTZ00454 26S protease regulato 97.2 0.0012 2.6E-08 75.1 9.0 101 504-629 180-298 (398)
477 PRK08699 DNA polymerase III su 97.2 0.00073 1.6E-08 74.9 6.9 117 504-627 22-155 (325)
478 PRK06921 hypothetical protein; 97.2 0.0016 3.5E-08 70.2 9.3 100 504-625 118-225 (266)
479 PRK12727 flagellar biosynthesi 97.1 0.0028 6E-08 74.1 11.6 88 503-594 350-440 (559)
480 PRK06731 flhF flagellar biosyn 97.1 0.0073 1.6E-07 65.4 14.0 100 503-603 75-176 (270)
481 PRK11823 DNA repair protein Ra 97.1 0.0022 4.8E-08 74.0 10.7 119 502-625 79-208 (446)
482 PRK12377 putative replication 97.1 0.0016 3.5E-08 69.6 8.6 105 504-625 102-206 (248)
483 TIGR00606 rad50 rad50. This fa 97.1 0.002 4.3E-08 83.6 10.6 69 562-630 1196-1275(1311)
484 PRK07952 DNA replication prote 97.1 0.001 2.2E-08 70.9 6.6 106 504-625 100-205 (244)
485 TIGR03015 pepcterm_ATPase puta 97.1 0.0033 7.1E-08 66.7 10.5 24 504-527 44-67 (269)
486 cd01122 GP4d_helicase GP4d_hel 97.1 0.0036 7.8E-08 66.8 10.9 30 498-527 25-54 (271)
487 PRK12723 flagellar biosynthesi 97.0 0.0069 1.5E-07 68.8 13.4 86 503-595 174-267 (388)
488 PHA02562 46 endonuclease subun 97.0 0.0011 2.3E-08 78.2 7.2 68 562-632 465-544 (562)
489 PRK06526 transposase; Provisio 97.0 0.0023 4.9E-08 68.6 9.0 103 503-625 98-201 (254)
490 PF13401 AAA_22: AAA domain; P 97.0 0.0012 2.6E-08 62.0 6.1 111 504-624 5-125 (131)
491 PRK10246 exonuclease subunit S 97.0 0.0012 2.6E-08 83.7 7.8 69 561-630 945-1022(1047)
492 PRK08727 hypothetical protein; 97.0 0.0029 6.4E-08 66.7 9.4 93 504-624 42-135 (233)
493 PRK01156 chromosome segregatio 97.0 0.0018 3.9E-08 80.8 9.0 71 562-633 798-878 (895)
494 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0039 8.5E-08 64.8 9.9 121 502-625 15-154 (224)
495 PRK14088 dnaA chromosomal repl 97.0 0.0028 6E-08 73.1 9.5 104 505-627 132-240 (440)
496 COG3854 SpoIIIAA ncharacterize 96.9 0.0025 5.3E-08 67.0 7.9 106 506-630 140-258 (308)
497 TIGR03499 FlhF flagellar biosy 96.9 0.0018 3.9E-08 70.3 7.3 83 503-592 194-282 (282)
498 PRK10078 ribose 1,5-bisphospho 96.9 0.0005 1.1E-08 69.6 2.9 25 503-527 2-26 (186)
499 PTZ00035 Rad51 protein; Provis 96.9 0.0059 1.3E-07 68.1 11.4 123 501-624 116-267 (337)
500 PRK05703 flhF flagellar biosyn 96.9 0.0044 9.5E-08 71.2 10.3 85 503-594 221-311 (424)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.6e-68 Score=612.16 Aligned_cols=686 Identities=28% Similarity=0.315 Sum_probs=582.4
Q ss_pred ccceecCCCceEEEEEeec----cceeeccc--CCCHHHHHHHHhhcCCCcceeecccCCCCCccccccccCCCcccccc
Q 003681 3 LSGVSRSAKGYCIISILET----MKTYSLED--GLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 76 (803)
Q Consensus 3 ~~gi~~~~~gy~~~~v~~~----~~~~~~~~--~lt~ea~~~~l~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (803)
+.+++++++|||.|+..++ |..+..++ +|++|++..++|..++||.|.|.+|..+++ +|+.|+.|+..|.+
T Consensus 181 ~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s---~~~kftpg~kqwWe 257 (1125)
T KOG0217|consen 181 EGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIPPS---FWKKFTPGEKQWWE 257 (1125)
T ss_pred cCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCCCCCccceecCHH---HHhcCCchhhhhhh
Confidence 6789999999999999999 99999998 999999999999999999999999998887 99999999999999
Q ss_pred ccccccc---ccCCCchHHHHHHHHHhhCCCcccceEEEeecCCCCCC---CCchhhhhhhc--cccCCCcccchhhccC
Q 003681 77 CIARHFE---WFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPR---PLHLGTATQIG--AIPTEGIPCLLKVLLP 148 (803)
Q Consensus 77 ~~~~~~~---~~~~~~~~~ll~~v~~~~~~~~~~~f~~~~~~~~~rp~---pl~~~ta~qlg--~~~~~~ip~ll~~~lp 148 (803)
|.+++|+ ||.++-.-+|+.+++..++.+.+..|++++++..++|. |++.++++|.| +.+++++|+.+...+|
T Consensus 258 iKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r 337 (1125)
T KOG0217|consen 258 IKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIR 337 (1125)
T ss_pred hhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhh
Confidence 9999999 99999999999999999999999999999999999999 99999999999 9999999999999999
Q ss_pred CCCCC----chHHHHHhhccCCCchHHHHHHHHHHHHhcccCCCCch--HHH-----HHHHHHhhhhhhHHHH--HHHHH
Q 003681 149 SNCSG----LPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPE--FTC-----LVKLLELREANHIEFC--RIKNV 215 (803)
Q Consensus 149 ~~~~~----~~~~~~r~lll~pP~~~~a~~i~~~~~~~~~~~~~~p~--~~~-----~~~ll~~~~a~~~~~~--~~~~~ 215 (803)
+.+.+ .+|||++++|.+||-+++|..++.+|+.|++++++.|. +++ ......+||.+-.+|| +.++.
T Consensus 338 ~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~~s~ 417 (1125)
T KOG0217|consen 338 ERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRHCSK 417 (1125)
T ss_pred hcccccchhhHHHHHHHHhcCCcchhHHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchhhhH
Confidence 99999 99999999999999999999999999999999999998 555 4567999999999999 79999
Q ss_pred HHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHHHHH----HHHHHhhc-hhcccCC--c-cccccCCCCCCh--
Q 003681 216 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR----LASVRIGE-MISLDGE--S-DQKICSYDNIPS-- 285 (803)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~c~----~~~~~i~~-~v~~~~~--~-~~~~~~~~~ip~-- 285 (803)
++.+|.+++-.|+-...+.|.+|||..++.++......|.|+ |..+++.. ||+.+-- + -+-.++....|.
T Consensus 418 L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek~~~eii~~dy~~~~g~e~~~sil~~p~~~ 497 (1125)
T KOG0217|consen 418 LDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEKTGREIISEDYFESLGLEDSPSILKSPNTD 497 (1125)
T ss_pred HHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhhHHHHHhhhhhhhcccccCchhhccCCCcc
Confidence 999999999999999999999999999999999999999999 77776666 7765310 0 111222233343
Q ss_pred -hHHhhhhhhhccccccccchHHHHHHHHHHHHHHHH---HHhhhHHHHHHhhhhcCCCCCCCcceeeeccccceeeecc
Q 003681 286 -EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLA---VTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGK 361 (803)
Q Consensus 286 -~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~a---i~~d~~~~l~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~ 361 (803)
+|+-+...+|++||+..++++++-++..-.+....+ +..|+.++.....+.-...|++++++.|..+.-.+|+ |+
T Consensus 498 ~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpf-GK 576 (1125)
T KOG0217|consen 498 KELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPF-GK 576 (1125)
T ss_pred chhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChH-HH
Confidence 677778899999999999999999998888777666 6667777777776666777889999999999888998 88
Q ss_pred ceecccccCCCCccc--cCccccccccCCC------ccceeeeecHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 003681 362 KFRPTVWASTPGEEQ--IKQLKPAVDSKGR------KVGEEWFSTLKVEEALERYHEAGAK------AKAKVLELLRGLS 427 (803)
Q Consensus 362 r~~~~v~~~~~~~~~--i~~lv~~~~~~G~------~v~~e~~~t~~l~~~l~~~~~a~~~------~~~~~~~il~~L~ 427 (803)
|+.. .|...+..++ |++.....+..++ ++...|+++++++.++.|+++.... ...++++-++++.
T Consensus 577 Rllk-~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~ 655 (1125)
T KOG0217|consen 577 RLLK-TWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEIN 655 (1125)
T ss_pred HHHH-HHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHH
Confidence 8776 6887776655 7777777777666 7777899999999999999865443 1111111111110
Q ss_pred HHHH----------------------------------------------------------------------------
Q 003681 428 SELQ---------------------------------------------------------------------------- 431 (803)
Q Consensus 428 ~~l~---------------------------------------------------------------------------- 431 (803)
..++
T Consensus 656 ~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~ 735 (1125)
T KOG0217|consen 656 KLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLE 735 (1125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred --------------------------------------------------------------------------------
Q 003681 432 -------------------------------------------------------------------------------- 431 (803)
Q Consensus 432 -------------------------------------------------------------------------------- 431 (803)
T Consensus 736 ~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~ 815 (1125)
T KOG0217|consen 736 EYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLI 815 (1125)
T ss_pred HHHHhcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhhhc--ccCCceeeEeecCccCCcceEEEeccCccccccC--CCceeeeccCCC
Q 003681 432 ----TKINILVFASMLLVIGKALFAHVSEG--RRRKWVFPALKDIELDGANCLKMNGLSPYWFDAA--EGSAVHNTVDMQ 503 (803)
Q Consensus 432 ----~~i~~L~~~~~~~~~a~al~a~a~~a--~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~~--~~~~VlndVsLG 503 (803)
.+..........++..|++++++..+ ...++|+|++.+. .++...+.+.++.|+++... ++.+++|++.+|
T Consensus 816 ~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~-~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g 894 (1125)
T KOG0217|consen 816 VRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVES-TDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELG 894 (1125)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecc-cCCCceeEEecccCceeecCcCCCccccchhhcc
Confidence 00000001111233445666665544 4567899999875 33333577777766665543 457899999994
Q ss_pred -----cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHH
Q 003681 504 -----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 578 (803)
Q Consensus 504 -----ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa 578 (803)
.+.++|||||+|||||||+++.+++|+|+|++||++...++.+++||+++|+.|++..+.|||..++.+...|+.
T Consensus 895 ~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~ 974 (1125)
T KOG0217|consen 895 GAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILK 974 (1125)
T ss_pred ccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHh
Confidence 456699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEEeCCc-eeeeeE
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQ-TVPTWK 656 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~-l~~tYk 656 (803)
.++..+||++||.++||.+.+|.+|+.++++++.+ .+|..+|+|||+.++......+.+..+||...++++. ++|+||
T Consensus 975 ~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYk 1054 (1125)
T KOG0217|consen 975 HATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYK 1054 (1125)
T ss_pred hcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeeh
Confidence 99999999999999999999999999999999976 6899999999999998888888899999998777665 999999
Q ss_pred EeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003681 657 LVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 657 L~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
+.+|+|++|||+++|+++|+|+.|+++|.....+++..
T Consensus 1055 l~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~ 1092 (1125)
T KOG0217|consen 1055 LEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKS 1092 (1125)
T ss_pred hccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888754
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.4e-49 Score=478.17 Aligned_cols=510 Identities=23% Similarity=0.283 Sum_probs=371.5
Q ss_pred CchhhhhhhccccCC--C-cccchhhccCCCCCCchHHHHHhhccCCCchH--HH---HHHHHHHH------HhcccCCC
Q 003681 123 LHLGTATQIGAIPTE--G-IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IA---STIQAICK------LMSKVTCS 188 (803)
Q Consensus 123 l~~~ta~qlg~~~~~--~-ip~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a---~~i~~~~~------~~~~~~~~ 188 (803)
|...|-.+|-|+++. | -.+|+..+ -.-.++.=+|.||.||++|.--. |- +++++... -+...=..
T Consensus 251 lD~~t~~~LEl~~~~~~~~~gSL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~ 329 (840)
T TIGR01070 251 LDAATRRNLELTENLRGGKQNTLFSVL-DETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKE 329 (840)
T ss_pred eCHHHHHhccCCccCCCCCCCcHHHHH-hhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 445677788888763 1 22555544 33335555999999999998642 11 22333222 11123346
Q ss_pred CchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHH---HHHHHHHHHhhc
Q 003681 189 IPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV---EECRLASVRIGE 265 (803)
Q Consensus 189 ~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~c~~~~~~i~~ 265 (803)
+|+++.+...+..+.++-..|..++..+..+-. +.++++..-.|. ...+. ..+....+.|+.
T Consensus 330 i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~------l~~~l~~~~~~~---------l~~l~~~l~~~~~l~~~i~~ 394 (840)
T TIGR01070 330 VGDLERLAARVALGNARPRDLARLRTSLEQLPE------LRALLEELEGPT---------LQALAAQIDDFSELLELLEA 394 (840)
T ss_pred CcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH------HHHHHHhcCcHH---------HHHHHHhcccHHHHHHHHHH
Confidence 899999888888888888777777777664432 222222211110 01111 122333444555
Q ss_pred hhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCCCCCCc
Q 003681 266 MISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKG 345 (803)
Q Consensus 266 ~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~~~~ 345 (803)
.+.. +.+........|.+.+.+.+ +++++..+.+...+.+ +..+.+. ..+-..-
T Consensus 395 ~i~~--~~~~~~~~~~~I~~g~~~~L-----------------d~lr~~~~~~~~~l~~----l~~~~~~---~~~i~~l 448 (840)
T TIGR01070 395 ALIE--NPPLVVRDGGLIREGYDEEL-----------------DELRAASREGTDYLAR----LEARERE---RTGIPTL 448 (840)
T ss_pred HHhc--CCccccccCCeeCCCCCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHH---HcCCCce
Confidence 5532 11112222344555555544 3333333333222221 1111111 1111111
Q ss_pred ceeeeccccceeeeccceecccccCCCCccccCc-cccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003681 346 EILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLR 424 (803)
Q Consensus 346 ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~-lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~ 424 (803)
.+.|. +..+|.+.+..... ..+++ .++..+. .+.++|+++++.+..+++.++.+++.+...+++.
T Consensus 449 k~~~~--------~~~gy~iev~~~~~--~~vp~~~i~~~s~----~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~ 514 (840)
T TIGR01070 449 KVGYN--------AVFGYYIEVTRGQL--HLVPAHYRRRQTL----KNAERYITPELKEKEDKVLEAEGKILALEKELFE 514 (840)
T ss_pred EEEEe--------cCceEEEEEehhhh--hcCCcceEEEEec----cCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 12346666544321 23443 4444433 3457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccCcccccc-CCCceeeeccCCC
Q 003681 425 GLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDMQ 503 (803)
Q Consensus 425 ~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~-~~~~~VlndVsLG 503 (803)
++...+..+.+.+..+...+...|+++++|..+...+||+|++++. ..+.+.+.+|+..+. ..+.+|+||++++
T Consensus 515 ~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~RHP~le~~~~~~~VpNdi~l~ 589 (840)
T TIGR01070 515 ELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDD-----PQLRIREGRHPVVEQVLRTPFVPNDLEMA 589 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCC-----CcEEEEeeECHHHHhccCCCeEeeeeecC
Confidence 9999999999999999999999999999999999999999999764 246666443333321 1357999999993
Q ss_pred ---cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhC
Q 003681 504 ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 504 ---ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a 580 (803)
++++|||||||||||+||+++.+++|+|+|+||||+.+.++.+|+||+++|..|++..+.|||+.||.+++.|+..+
T Consensus 590 ~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~a 669 (840)
T TIGR01070 590 HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNA 669 (840)
T ss_pred CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEee
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVD 659 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~ 659 (803)
++++|+|+||+|+|||+.+|.+|++++++++.+ .++.++|+||++++..+....+++.+.||.+...++++.|+||+.+
T Consensus 670 t~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~ 749 (840)
T TIGR01070 670 TENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLP 749 (840)
T ss_pred CCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECC
Confidence 999999999999999999999999999999988 8999999999999999988888999999999888899999999999
Q ss_pred CcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 003681 660 GICRESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 660 G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~ 693 (803)
|.+++|||+++|+++|+|++||+||++++++++.
T Consensus 750 G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~ 783 (840)
T TIGR01070 750 GPASKSYGLAVAALAGLPKEVIARARQILTQLEA 783 (840)
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999974
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=2.4e-49 Score=478.30 Aligned_cols=507 Identities=24% Similarity=0.289 Sum_probs=370.9
Q ss_pred CchhhhhhhccccC-----CCcccchhhccCCCCCCchHHHHHhhccCCCchH--HHHHHHHHHHHhc----------cc
Q 003681 123 LHLGTATQIGAIPT-----EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IASTIQAICKLMS----------KV 185 (803)
Q Consensus 123 l~~~ta~qlg~~~~-----~~ip~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a~~i~~~~~~~~----------~~ 185 (803)
|.-.|-.+|-|+++ .| ||+..+ =.-.++.=+|.||+||++|.--. |-.- +.++..+. ..
T Consensus 265 lD~~tl~~Lei~~~~~~~~~g--SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R-~d~Ve~l~~~~~~~~~l~~~ 340 (854)
T PRK05399 265 LDAATRRNLELTENLRGGRKN--SLLSVL-DRTVTAMGGRLLRRWLHRPLRDREAIEAR-LDAVEELLEDPLLREDLREL 340 (854)
T ss_pred cCHHHHHhccCCccCCCCCCC--cHHHHh-ccCCCcHHHHHHHHHHhCcCCCHHHHHHH-HHHHHHHHhCHHHHHHHHHH
Confidence 33477788888876 33 666554 33334555999999999986532 1111 12222221 23
Q ss_pred CCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHH---HHHHHHHHH
Q 003681 186 TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV---EECRLASVR 262 (803)
Q Consensus 186 ~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~c~~~~~~ 262 (803)
=..+|++..+...+..+.++...|..++..+..+-. +..+++..-.|. ...+. ..+....+.
T Consensus 341 L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~------l~~~l~~~~~~~---------l~~l~~~l~~~~~l~~~ 405 (854)
T PRK05399 341 LKGVYDLERLLSRIALGRANPRDLAALRDSLEALPE------LKELLAELDSPL---------LAELAEQLDPLEELADL 405 (854)
T ss_pred HhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH------HHHHHHhcCcHH---------HHHHHhhcccHHHHHHH
Confidence 345899999888888888988778777777664432 222222111010 01111 123344455
Q ss_pred hhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCCCC
Q 003681 263 IGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGG 342 (803)
Q Consensus 263 i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~ 342 (803)
|.+++.. |........+.|.+.|.+.+.+ +++.+.++++....+.+...++ ++-
T Consensus 406 i~~~i~~--~~~~~~~~~~~i~~g~~~~Ld~----------lr~~~~~~~~~l~~~~~~~~~~--------------~~~ 459 (854)
T PRK05399 406 LERAIVE--EPPLLIRDGGVIADGYDAELDE----------LRALSDNGKDWLAELEARERER--------------TGI 459 (854)
T ss_pred HHHHHcc--CCchhcccCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHH--------------cCC
Confidence 6666542 1111222234556666555433 3333333333333332222111 221
Q ss_pred CCcceeeeccccceeeeccceecccccCCCCccccCc-cccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHH
Q 003681 343 PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLE 421 (803)
Q Consensus 343 ~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~-lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~ 421 (803)
..-.+.|... ..|.+.+.... ...+++ .++. ..+.+.++|+|+++.++.+++.++.+++.+...+
T Consensus 460 ~~l~~~~~~~--------~gy~iev~~~~--~~~vp~~~~~~----~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~ 525 (854)
T PRK05399 460 SSLKVGYNKV--------FGYYIEVTKAN--LDKVPEDYIRR----QTLKNAERYITPELKELEDKILSAEEKALALEYE 525 (854)
T ss_pred CceEEEEcCc--------eeEEEEEEcch--hhhCChhhhhe----eeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221 12444433221 112332 2222 2334567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccCcccccc--CCCceeeec
Q 003681 422 LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNT 499 (803)
Q Consensus 422 il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~--~~~~~Vlnd 499 (803)
+++++...+..+...+..+...+...|+++++|..+...+||+|++++. ..+.+++.+|+.+.. ..+.+|+||
T Consensus 526 i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~l~i~~~rHP~le~~~~~~~~vpnd 600 (854)
T PRK05399 526 LFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDD-----PGIDIEEGRHPVVEQVLGGEPFVPND 600 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCC-----CCEEEEeccCcEEecccCCCceEecc
Confidence 9999999999999999999999999999999999999999999999864 235555444333332 246799999
Q ss_pred cCC---CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHH
Q 003681 500 VDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 500 VsL---Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
+++ +++++|||||||||||+||+++.+++|+|+|+|||+..+.++.+|+||+++|..|++..+.|||+.||.+++.|
T Consensus 601 ~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~i 680 (854)
T PRK05399 601 CDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANI 680 (854)
T ss_pred eeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHH
Confidence 999 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeee
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTW 655 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tY 655 (803)
+..+++++|+|+||||+||++.+|.++++++++++.+. ++++||+||++++..+....+++.+.||.+...++++.|+|
T Consensus 681 l~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flY 760 (854)
T PRK05399 681 LNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLH 760 (854)
T ss_pred HHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEE
Confidence 99999999999999999999999999999999999877 59999999999999998888899999999987789999999
Q ss_pred EEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 003681 656 KLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 656 kL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~ 693 (803)
|+.+|.+++|||+++|+++|+|++||+||++++++++.
T Consensus 761 kl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~ 798 (854)
T PRK05399 761 KVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES 798 (854)
T ss_pred EeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999974
No 4
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-48 Score=463.06 Aligned_cols=301 Identities=31% Similarity=0.418 Sum_probs=277.1
Q ss_pred CccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEee
Q 003681 389 RKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALK 468 (803)
Q Consensus 389 ~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~ 468 (803)
...+.++|+|+++.+..+++.++..++.....+++.++.+.+..+++.+......++..|++.++|..+...+||+|+++
T Consensus 494 t~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~ 573 (843)
T COG0249 494 TLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFV 573 (843)
T ss_pred HHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceec
Confidence 34456899999999999999999999999999999999999999999999988889999999999999999999999998
Q ss_pred cCccCCcceEEEecc-CccccccCCCceeeeccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccccccc
Q 003681 469 DIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 544 (803)
Q Consensus 469 ~~~~~g~~~i~l~~l-~~~~~~~~~~~~VlndVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~ 544 (803)
+. . .+.+++. ||..-......+|+||+++ +++++|||||||||||+||++|.+++|||+|+||||+.+.++
T Consensus 574 ~~---~--~l~i~~gRHPvvE~~~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ 648 (843)
T COG0249 574 DS---N--DLEIKEGRHPVVEAVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIG 648 (843)
T ss_pred CC---C--CEEEEecCcchhhhhccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHcccc
Confidence 64 1 1666644 4443222223399999999 489999999999999999999999999999999999999999
Q ss_pred chHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEcc
Q 003681 545 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTH 623 (803)
Q Consensus 545 ~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH 623 (803)
++|+||+++|..|++..+.|||+.||.+++.|+..+++.||+||||.|+||++.+|.+|+|++++++.+. ++.+||+||
T Consensus 649 ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATH 728 (843)
T COG0249 649 IVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATH 728 (843)
T ss_pred ccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885 999999999
Q ss_pred ChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003681 624 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 624 ~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
|+|+.++......+.|.||.....++++.|.|++.+|.+.+|||+++|+++|+|.+||+||++++.+++..
T Consensus 729 y~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~ 799 (843)
T COG0249 729 YHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKE 799 (843)
T ss_pred HHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 99999999888899999999988889999999999999999999999999999999999999999999754
No 5
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=4.3e-46 Score=445.79 Aligned_cols=443 Identities=23% Similarity=0.296 Sum_probs=346.1
Q ss_pred cCCCCchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHH---HHHHHH
Q 003681 185 VTCSIPEFTCLVKLLELRE-ANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE---ECRLAS 260 (803)
Q Consensus 185 ~~~~~p~~~~~~~ll~~~~-a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~---~c~~~~ 260 (803)
.-+++|++..+.+.+..+. .+..++.+|+.++..+-.+. ..++..-+. . ..--...+.+ .+....
T Consensus 64 ~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~------~~l~~~~~~----~-~~~~L~~~~~~l~~~~~l~ 132 (782)
T PRK00409 64 PFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK------RFIEDLEEE----E-ELPILEEWVAKIRTLPELE 132 (782)
T ss_pred CCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH------HHHHhcccc----c-chhHHHHHHHcCcCcHHHH
Confidence 5567888888777776543 66778888888877554333 222110000 0 0000011111 122233
Q ss_pred HHhhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCC
Q 003681 261 VRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPL 340 (803)
Q Consensus 261 ~~i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~ 340 (803)
+.|...+..+ |.++. .++.+++.+.+....+...+.+.+..++...+ .
T Consensus 133 ~~i~~~id~~--------------------------g~i~d-~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~-----~ 180 (782)
T PRK00409 133 QEIHNCIDEE--------------------------GEVKD-SASEKLRGIRRQLRRKKSRIREKLESIIRSKS-----L 180 (782)
T ss_pred HHHHHHhCCC--------------------------CEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c
Confidence 4444444221 12222 25557777777777777777665543333211 0
Q ss_pred CCCCcceeeeccccceeeeccceecccccCCCCccccCccccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHH
Q 003681 341 GGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVL 420 (803)
Q Consensus 341 ~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~ 420 (803)
. .|.. ...++.++.||+++++.+.+. .+++++|+.+++|+++|.+| ..+.++++++.++..++.+++.
T Consensus 181 ---~---~~L~-d~~it~r~~r~~i~vk~~~~~--~~~g~v~~~s~sg~t~y~ep---~~~~~ln~~l~~l~~~~~~~~~ 248 (782)
T PRK00409 181 ---Q---KYLQ-DTIITIRNDRYVLPVKAEYKH--AIKGIVHDQSSSGATLYIEP---QSVVELNNEIRELRNKEEQEIE 248 (782)
T ss_pred ---c---cccc-cceEEEECCEEEEEechhhhc--cCCCceeeEECCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111 123577888999999887654 68999999999999987665 3566778888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccCccccccCCCceeeecc
Q 003681 421 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV 500 (803)
Q Consensus 421 ~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~~~~~~VlndV 500 (803)
+++++|+..+..+...+......+...|+++|.+..+...+||+|++++. ..+.+.+.+|+++ ...++|+||+
T Consensus 249 ~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~-----~~i~l~~~rHPll--~~~~~Vpndi 321 (782)
T PRK00409 249 RILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDE-----GKIDLRQARHPLL--DGEKVVPKDI 321 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCC-----CcEEEcCcCCcee--ccCceECcee
Confidence 99999999999999999999888899999999999999999999999753 3477776655554 2356999999
Q ss_pred CCC---cEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccc-ccccchHHHhhhCCcCCCccCCccchHHHHHHHHHH
Q 003681 501 DMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 501 sLG---ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
+++ ++++|||||||||||+||+|+++++|+|+|++||+.. +.++.++++|++++..+++..+.|+|+.+|+++..+
T Consensus 322 ~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 322 SLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred EECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 993 5899999999999999999999999999999999985 789999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeE
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 656 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYk 656 (803)
+..+++|+|+|||||++||||.++.+++.++++++.+.|+++|++||++++..+......+.+++|.+ +.+++.|+|+
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEEE
Confidence 99999999999999999999999999998999999888999999999999998877777788888775 4578999999
Q ss_pred EeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003681 657 LVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 657 L~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~ 691 (803)
+..|.+++|||+++|+++|+|++||++|++++...
T Consensus 480 l~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 514 (782)
T PRK00409 480 LLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGED 514 (782)
T ss_pred EeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999998765
No 6
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=8.6e-45 Score=433.64 Aligned_cols=470 Identities=24% Similarity=0.292 Sum_probs=361.8
Q ss_pred CCchHHHHHhhccCCCchHHHHHHHH---HHHHhc-ccCCCCchHHHHHHHHHhhh-hhhHH-HHHHHHHHHHHHhhhcC
Q 003681 152 SGLPILYVRDLLLNPPAYEIASTIQA---ICKLMS-KVTCSIPEFTCLVKLLELRE-ANHIE-FCRIKNVLDEILHMYGN 225 (803)
Q Consensus 152 ~~~~~~~~r~lll~pP~~~~a~~i~~---~~~~~~-~~~~~~p~~~~~~~ll~~~~-a~~~~-~~~~~~~~~~~l~~~~~ 225 (803)
+.+-+.+++.+-+...+.++....++ +..++. -.-++++++..+.+.++.+. .+..+ |.+|++.+..+..+.
T Consensus 24 t~~gk~~~~~l~P~~~~~~i~~~l~~~~e~~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~-- 101 (771)
T TIGR01069 24 TPLGKEDAIGLKPPKSVEESKEIIIKLTALGSIENNVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK-- 101 (771)
T ss_pred CHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH--
Confidence 45558888885444444444444333 333332 24456777777777777655 66767 888888877554333
Q ss_pred chHHHHHHhhcchhhhhhccCCChHHHHHH------HHHHHHHhhchhcccCCccccccCCCCCChhHHhhhhhhhcccc
Q 003681 226 SELNEILELLMDPTWVATGLKIDFETLVEE------CRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRV 299 (803)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~------c~~~~~~i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~ 299 (803)
..++.. . +...|.+. +.....+|.+.+..+ |.+
T Consensus 102 ----~~l~~~-~----------~~~~L~~~~~~l~~~~~l~~~i~~~id~~--------------------------g~i 140 (771)
T TIGR01069 102 ----VLSEHV-L----------DLEILFHLRLNLITLPPLENDIIACIDDD--------------------------GKV 140 (771)
T ss_pred ----HHHhcc-c----------cchHHHHHHhcCCCcHHHHHHHHHHhCCC--------------------------CEE
Confidence 222110 0 11112111 222334455554321 112
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCCCCCCcceeeeccccceeeeccceecccccCCCCccccCc
Q 003681 300 KRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ 379 (803)
Q Consensus 300 ~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~ 379 (803)
+ +.++.+++.+++....+...+.+.+..++..... . .|... ..+++|++||+++++++.+. .++|
T Consensus 141 ~-d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~--------~---~~l~~-~~it~r~~r~vipvk~~~~~--~i~g 205 (771)
T TIGR01069 141 K-DGASEELDAIRESLKALEEEVVKRLHKIIRSKEL--------A---KYLSD-TIVTIRNGRYVLPLKSGFKG--KIKG 205 (771)
T ss_pred C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--------h---hhhcC-ceEEEECCEEEEEeeHHHhh--cCCC
Confidence 2 2255567777777777777666654433322110 0 12211 34667888999999987554 6899
Q ss_pred cccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 003681 380 LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR 459 (803)
Q Consensus 380 lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~ 459 (803)
++|+.+++|+++|.+|. .+.++++++.++..++.+++.+++++|+..+..+.+.+......+...|++++.+..+..
T Consensus 206 ~v~~~S~sg~t~~~ep~---~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 206 IVHDTSSSGETFYIEPQ---AIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred eEEEEeCCCCEEEEEcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887753 466777788888888999999999999999999999999888888888999999988889
Q ss_pred CCceeeEeecCccCCcceEEEeccCccccccCCCceeeeccCCC---cEEEEEcCCCCCchHHHHHHHHhHhhhhcCccc
Q 003681 460 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 536 (803)
Q Consensus 460 ~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~~~~~~VlndVsLG---ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~V 536 (803)
.+|++|.+.+. ..+.+.+++++++. ..++|++|++++ ++++||||||+|||||||+|+++.+|++.|++|
T Consensus 283 ~~~~~P~~~~~-----~~i~l~~~rhPll~--~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~V 355 (771)
T TIGR01069 283 VKGEFPMPSFT-----GKIILENARHPLLK--EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPI 355 (771)
T ss_pred CCCeeceecCC-----CCEEEccccCceec--CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCc
Confidence 99999998653 25778877665542 345999999994 799999999999999999999999999999999
Q ss_pred cccc-ccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003681 537 PAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 537 pa~~-a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g 615 (803)
|+.. ..++.++++|..++..+++..+.|+|+.+|.++..++..+++++|+|+|||++||||.++.+++.++++++.+.|
T Consensus 356 pa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g 435 (771)
T TIGR01069 356 PANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQN 435 (771)
T ss_pred cCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9976 678999999999999999999999999999999999998999999999999999999999999989999999899
Q ss_pred CEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003681 616 CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 616 ~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~ 691 (803)
+++|++||+.++..+.....++.+++|.++ .+++.|+|+|.+|++++|||++||+++|+|++||++|++++...
T Consensus 436 ~~viitTH~~eL~~~~~~~~~v~~~~~~~d--~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 436 AQVLITTHYKELKALMYNNEGVENASVLFD--EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred CEEEEECChHHHHHHhcCCCCeEEeEEEEc--CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999888877888888888754 57899999999999999999999999999999999999998876
No 7
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-42 Score=394.41 Aligned_cols=406 Identities=24% Similarity=0.341 Sum_probs=331.9
Q ss_pred HHHHHHHhhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 003681 256 CRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKA 335 (803)
Q Consensus 256 c~~~~~~i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~ 335 (803)
....+.++++||+++.|.|+...|.|.|.++|.+.+.+ +.+.+++++.-+.+++..+..||.
T Consensus 426 ~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~e----------Lrq~LdeL~~~m~~~hkrv~~dl~-------- 487 (902)
T KOG0219|consen 426 HLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQE----------LREKLDELERKMEKLHKKVSADLG-------- 487 (902)
T ss_pred hhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence 33446788899999999999999999999999999988 889999999999999999999975
Q ss_pred hcCCCCCCCcceeeeccccceeeeccceecccccCCCCccccCccccccccCCCccceeeeecHHHHHHHHHHHHHHHHH
Q 003681 336 TTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKA 415 (803)
Q Consensus 336 ~~~~~~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~ 415 (803)
+. .++++..-..+...|- |+.+... +..++.-.|...-+.++. ..+|||.++...+++|.+...+.
T Consensus 488 ----~D-~~kklkLe~~~~~G~~----~RlTr~e----~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y 553 (902)
T KOG0219|consen 488 ----LD-PKKQLKLENSAQFGWY----FRVTRKE----EKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEY 553 (902)
T ss_pred ----CC-cccceeeeccchhhee----eeeeehh----hhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHH
Confidence 22 2233333344444552 2222111 111221122222222333 46799999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhcccCCceeeEeecCccCCcceEEEeccCccccccC-C
Q 003681 416 KAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHV--SEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAA-E 492 (803)
Q Consensus 416 ~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a--~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~~-~ 492 (803)
.+...++.+++......|.+.+..+...++.+|+..+++ +.....+|+||.+.+. |...+.+++-+|+++... .
T Consensus 554 ~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~---gs~rl~l~~~rHp~lE~Qd~ 630 (902)
T KOG0219|consen 554 DEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL---GSKRLELKQSRHPVLEGQDE 630 (902)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc---chhHHHHHhcccchhhcccc
Confidence 888888888888877777777776666667777655444 4444789999999764 333455555444443333 3
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~ 568 (803)
-.+++||+++ .++.+||||||+||||++|+.+-+.+|+|+|+|||++.+.++..|.|+++.|+.|+...+.||||.
T Consensus 631 ~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~ 710 (902)
T KOG0219|consen 631 IPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMA 710 (902)
T ss_pred CCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHH
Confidence 4589999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003681 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 569 em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~ 647 (803)
+|.+.+.|+.++++.+|||+|||++||.+.+|..++|++-+++. +.||..||+||++++..++...+.+.+.||.+...
T Consensus 711 Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~ 790 (902)
T KOG0219|consen 711 EMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIE 790 (902)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEec
Confidence 99999999999999999999999999999999999999999995 55899999999999999999999999999999998
Q ss_pred CCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccch
Q 003681 648 DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCV 696 (803)
Q Consensus 648 ~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~~~ 696 (803)
++.+.-.|++.+|+|+.|||+.+|+++|+|+.|++.|++.+.+++...+
T Consensus 791 ~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~ 839 (902)
T KOG0219|consen 791 NDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELV 839 (902)
T ss_pred CcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999875533
No 8
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-41 Score=380.21 Aligned_cols=315 Identities=23% Similarity=0.300 Sum_probs=265.5
Q ss_pred ccCccccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003681 376 QIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 455 (803)
Q Consensus 376 ~i~~lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~ 455 (803)
+++.+..+|-.-+.|...-+|+|++..+.+.++.-..+.....-...+..+...+..+...+..+..-+...||++++|.
T Consensus 702 ~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~ 781 (1070)
T KOG0218|consen 702 QIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAA 781 (1070)
T ss_pred ccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777789999999988877766655555444555666667777777778777777788899999999
Q ss_pred hcccCCceeeEeecCccCCcceEEEec-cCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh
Q 003681 456 EGRRRKWVFPALKDIELDGANCLKMNG-LSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG 530 (803)
Q Consensus 456 ~a~~~~~~~P~~~~~~~~g~~~i~l~~-l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la 530 (803)
.++..+||||+|++. ...|.+++ .||..-.+..+.+||||+.+ +++.+||||||+|||.++|+++++.+||
T Consensus 782 ~s~n~nYvRPtfvd~----~~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMA 857 (1070)
T KOG0218|consen 782 TSCNVNYVRPTFVDG----QQEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMA 857 (1070)
T ss_pred HhccCCccCcccccc----hhhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 999999999999874 12233332 23332223456689999999 4799999999999999999999999999
Q ss_pred hcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003681 531 ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 610 (803)
Q Consensus 531 q~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~ 610 (803)
|+|+|||++.+.++++|.+|++||..|++..+.|||+.||.+...++..+++.+|+||||.|+||.+.+|.+|+.+.+++
T Consensus 858 QiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~y 937 (1070)
T KOG0218|consen 858 QIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKY 937 (1070)
T ss_pred HhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-cCCEEEEEccChhhhhCccccc-ccccceeEEEEe-------CCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHH
Q 003681 611 LDN-IGCLGIVSTHLHGIFSLPLKIK-NAAYKAMGTEYL-------DGQTVPTWKLVDGICRESLAFETAKREGVPETII 681 (803)
Q Consensus 611 L~~-~g~tvIivTH~~el~~l~~~~~-~v~~~~m~~~~~-------~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii 681 (803)
+.+ ..|.++|+||++.+.++....+ .+.++||+.... .+.+.|+|||..|.+.+|||+++|+++++|.+|+
T Consensus 938 f~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii 1017 (1070)
T KOG0218|consen 938 FSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSII 1017 (1070)
T ss_pred HHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHH
Confidence 964 5789999999999998876554 456899987542 2457899999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 003681 682 QRAEDLYIACGVN 694 (803)
Q Consensus 682 ~rA~~l~~~~~~~ 694 (803)
.||-.+.+++|..
T Consensus 1018 ~rA~siSeeleke 1030 (1070)
T KOG0218|consen 1018 NRAFSISEELEKE 1030 (1070)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998743
No 9
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=6.8e-41 Score=350.53 Aligned_cols=226 Identities=36% Similarity=0.537 Sum_probs=189.8
Q ss_pred ceeeEeecCccCCcceEEEeccCcccccc--CCCceeeeccCCC----cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcc
Q 003681 462 WVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLM 535 (803)
Q Consensus 462 ~~~P~~~~~~~~g~~~i~l~~l~~~~~~~--~~~~~VlndVsLG----ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~ 535 (803)
||+|+|+++ ..+.+++.+|+.+.. .++++|+||+.++ .+++|||||+|||||+||+|+.+++|+|+|+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~ 75 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCF 75 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--
T ss_pred CcccEEcCC-----CCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCce
Confidence 899999874 267777664444333 3678999999992 58999999999999999999999999999999
Q ss_pred cccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-c
Q 003681 536 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-I 614 (803)
Q Consensus 536 Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~ 614 (803)
|||+.+.++.+++||++++..|++..+.|+|+.||+++..++..+++.+|+|+||+++||++.+|.+++++++++|.+ .
T Consensus 76 VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~ 155 (235)
T PF00488_consen 76 VPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKS 155 (235)
T ss_dssp BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 003681 615 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 692 (803)
Q Consensus 615 g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~ 692 (803)
++.+|++||++++.+......++.+.+|.+...++++.++|++.+|.+..|||+++|+++|+|++||+||++++++++
T Consensus 156 ~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~ 233 (235)
T PF00488_consen 156 GCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLE 233 (235)
T ss_dssp T-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred cccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 999999999999988877777888999999888999999999999999999999999999999999999999999875
No 10
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.2e-37 Score=322.41 Aligned_cols=193 Identities=36% Similarity=0.565 Sum_probs=183.0
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchH
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs 567 (803)
.+++|+||+++ +++++|+||||+||||++++++++++|+|+|++||++.+.++.+++||++++..|++..+.|+|+
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHH
Confidence 35799999999 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEE
Q 003681 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~ 646 (803)
.||++++.++..+++|+|+|||||++|||+.++.++++++++++.+. ++++|++||++++.......+++.+.+|.+..
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~ 174 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAV 174 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999876 99999999999998877777788999999876
Q ss_pred eC------CceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHH
Q 003681 647 LD------GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 684 (803)
Q Consensus 647 ~~------~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA 684 (803)
.+ +++.|+||+.+|.+++|||+++|+++|+|++||+||
T Consensus 175 ~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 175 KNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred eccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 55 789999999999999999999999999999999987
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-37 Score=346.85 Aligned_cols=314 Identities=21% Similarity=0.300 Sum_probs=278.8
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecC--
Q 003681 393 EEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI-- 470 (803)
Q Consensus 393 ~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~~~-- 470 (803)
...|++..+-+.++|..+...++.-....++.++..+++.++.++..+...+...|++.+++..+...+|++|+|++.
T Consensus 514 ~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~sla 593 (867)
T KOG0220|consen 514 SYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDSLA 593 (867)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcee
Confidence 355789999999999999888888888889999999999999999999998889999888888888889999999986
Q ss_pred ccCCcceEEEeccCccccccCCCceeeeccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchH
Q 003681 471 ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 547 (803)
Q Consensus 471 ~~~g~~~i~l~~l~~~~~~~~~~~~VlndVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d 547 (803)
+.+|+|||. -....++++-|+..+ .++.+|||||||||||+||+++.+.+|||+|+||||..+.+|+|+
T Consensus 594 I~qGRHPIL--------e~i~~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~ 665 (867)
T KOG0220|consen 594 IKQGRHPIL--------EKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFK 665 (867)
T ss_pred eccCCCchh--------hhhcccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHH
Confidence 556666653 223345677788877 479999999999999999999999999999999999999999999
Q ss_pred HHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 548 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 548 ~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
+||++||..|++..+.|+|+.||++.+.|+..+++.+||+|||.++||+.++|.++.+++.|++.+....++++||+.++
T Consensus 666 RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFldI 745 (867)
T KOG0220|consen 666 RIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLDI 745 (867)
T ss_pred HHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccccceeEEEEeCCceee-eeEEeeCcCC-CcHHHHHHHHcCCCHHHHHHHHHHHHHhcccchhcccccCCC
Q 003681 628 FSLPLKIKNAAYKAMGTEYLDGQTVP-TWKLVDGICR-ESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPP 705 (803)
Q Consensus 628 ~~l~~~~~~v~~~~m~~~~~~~~l~~-tYkL~~G~~~-~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~~~~~~~~~~~~ 705 (803)
+.++...+++.+.||..+.+++..+. .|+|..|... ..||+++++..-+|++|+..|+.+..++..+ +...+...
T Consensus 746 a~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~---v~~~~rd~ 822 (867)
T KOG0220|consen 746 AAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQ---ILQNQRDT 822 (867)
T ss_pred HHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHH---HHhhccCc
Confidence 99999999999999988777776664 6999999765 5799999999999999999999999888644 33445567
Q ss_pred CcccccceeEEE
Q 003681 706 PSIIGASCVYVM 717 (803)
Q Consensus 706 p~~~~~~~vy~~ 717 (803)
|+...+..||.+
T Consensus 823 ~~~~rq~~Vy~~ 834 (867)
T KOG0220|consen 823 PEMERQRAVYHL 834 (867)
T ss_pred hHHHHHHHHHHH
Confidence 777777777773
No 12
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.2e-36 Score=313.86 Aligned_cols=192 Identities=34% Similarity=0.481 Sum_probs=178.0
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~ 568 (803)
.++++||+++ |++++|+||||+||||+||+|+++.++++.|+++|+..+.++.+++||++++..|++..+.|+|+.
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~ 96 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV 96 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHH
Confidence 4789999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCccc-ccccccceeEEEE
Q 003681 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK-IKNAAYKAMGTEY 646 (803)
Q Consensus 569 em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~~-~~~v~~~~m~~~~ 646 (803)
||++++.++..+++++|+|+|||++|||+.++.++++++++++.+. ++++|++||++++.++... ...+.+.+|.+..
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~ 176 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLE 176 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEE
Confidence 9999999999999999999999999999999999989999999887 8999999999999877654 3456778887543
Q ss_pred --------eCCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHH
Q 003681 647 --------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 684 (803)
Q Consensus 647 --------~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA 684 (803)
.++++.|+||+.+|.++.|||+++|+++|+|++|++||
T Consensus 177 ~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 177 SQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred eccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 34689999999999999999999999999999999997
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.7e-36 Score=310.96 Aligned_cols=200 Identities=31% Similarity=0.488 Sum_probs=186.1
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchH
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs 567 (803)
..++|+||+++ +++++|+||||||||||||+|+.+.+|+|.|++||+..+.++.++.++.+++..++...+.|+|+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHH
Confidence 46789999998 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEE
Q 003681 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~ 646 (803)
.++.+++.++..+++|+|+|||||++||++.++..+.+.+++++.+ .|+++|++||++++.+++++...+.+++|....
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 9999999999889999999999999999999999999888898875 589999999999999888888888888888766
Q ss_pred eC--CceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003681 647 LD--GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 647 ~~--~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~ 691 (803)
.+ +++.|+|++.+|.++.|||+++|+++|+|++|++||+++.+++
T Consensus 175 ~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 175 DDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred eCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 55 8899999999999999999999999999999999999998875
No 14
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.2e-35 Score=307.32 Aligned_cols=196 Identities=36% Similarity=0.531 Sum_probs=185.8
Q ss_pred CceeeeccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 493 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 493 ~~~VlndVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
.++|+||+++ .++++|+||||||||||||+|+++.++++.|+++|+..+.++.++++|++++..|++..+.|+|..+
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e 96 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVE 96 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHH
Confidence 5689999998 3799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeC
Q 003681 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLD 648 (803)
Q Consensus 570 m~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~ 648 (803)
+.++..++..+++|+++|||||++||++.++..+.+.+++++.+. ++++|++||+.++.++.+...++.+++|.+...+
T Consensus 97 ~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 97 MVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeC
Confidence 999999999999999999999999999999999888999999887 8999999999999998888888889999988888
Q ss_pred CceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 003681 649 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 688 (803)
Q Consensus 649 ~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~ 688 (803)
+++.++|++.+|.++.|||+++|+++|+|++|++||++++
T Consensus 177 ~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 177 GGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred CeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999873
No 15
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.1e-34 Score=292.86 Aligned_cols=184 Identities=36% Similarity=0.556 Sum_probs=173.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCe
Q 003681 505 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 584 (803)
Q Consensus 505 i~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~ps 584 (803)
+++||||||||||||||+|+...+++|.|+++|+..+.++.+++++.+++..+++..+.|+|+.+|+++..++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCcCC
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 663 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~ 663 (803)
++|+|||++|||+.++..+++.+++++.+. ++++|++||++++.++.+...++.+.+|.....++.+.++|++.+|.++
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 999999999999999999988999998874 8999999999999888777778899999888878889999999999999
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHH
Q 003681 664 ESLAFETAKREGVPETIIQRAEDLY 688 (803)
Q Consensus 664 ~S~al~iA~~~Glp~~Ii~rA~~l~ 688 (803)
.|||+++|+++|+|++|++||++++
T Consensus 161 ~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 161 KSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999863
No 16
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-34 Score=339.24 Aligned_cols=358 Identities=23% Similarity=0.280 Sum_probs=291.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCCCCCCcceeeeccccceeeeccceecccccCCCCccccCcccc
Q 003681 303 HIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKP 382 (803)
Q Consensus 303 ~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~ 382 (803)
+....+..++.....+...|.+.+...+..- . -.|.. .+.+..|++||++++++.+++ .+++++|
T Consensus 141 ~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~-----------~-~~~L~-e~~v~~r~~r~vlpvk~~fk~--~i~giv~ 205 (753)
T COG1193 141 RASFELDAIRRQLRDLEEEIRDKLESLIRSK-----------E-AKYLQ-DRIVTTRDGREVLPVKAEFKG--AIKGIVH 205 (753)
T ss_pred cccHHHHHHHhhhHHHHHHHHHHHHHHHhhh-----------h-hHhhh-hceEeccCCeEEeHHHHHhhh--hcCceEe
Confidence 4555667777776666666555544332221 0 11222 223667889999999988775 7999999
Q ss_pred ccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Q 003681 383 AVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKW 462 (803)
Q Consensus 383 ~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~ 462 (803)
+.+++|.+++.+|-... ++.+++.....++..++.++++++++.+.+++..+......+...|...+.+..+....+
T Consensus 206 d~sssg~tl~ieP~~vv---~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~ 282 (753)
T COG1193 206 DTSSSGATLYIEPRSVV---KLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKG 282 (753)
T ss_pred ecccccCeeeecchHHH---hhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 99999999999975444 555566666677777888999999999999887776655554444555555555556778
Q ss_pred eeeEeecCccCCcceEEEeccCccccccCCCceeeeccCCC---cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccc
Q 003681 463 VFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 539 (803)
Q Consensus 463 ~~P~~~~~~~~g~~~i~l~~l~~~~~~~~~~~~VlndVsLG---ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~ 539 (803)
+.|.+++. ..+.+.+.+|+.. +..|++++.++ ..++|||||.+|||+.||+++.+.+|+|.|.++|+.
T Consensus 283 v~P~~~~~-----~~l~l~~~~HPll----~~~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~ 353 (753)
T COG1193 283 VKPDFSND-----GVLELLDARHPLL----KEDVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPAL 353 (753)
T ss_pred CCCccCCC-----ceEEeccccCccC----ccccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeecc
Confidence 99999743 3466665544332 12288999994 689999999999999999999999999999999997
Q ss_pred cc-cccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Q 003681 540 SA-SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 618 (803)
Q Consensus 540 ~a-~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tv 618 (803)
.+ .++.|..+|..+|+.|++.+.+|||+.+|..+..++..+. +|+++||.++||||.+|.+++.++++++.+.++.+
T Consensus 354 ~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~ 431 (753)
T COG1193 354 EGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKI 431 (753)
T ss_pred CCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccce
Confidence 65 8999999999999999999999999999999999996555 99999999999999999999999999999999999
Q ss_pred EEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003681 619 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 619 IivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~ 691 (803)
+.+||+.++..+......+.++.|.++ .+++.|+|++..|.+++|||+++|.++|+|..++++|+...+..
T Consensus 432 ~~tTH~~elk~~~~~~~~v~nas~~fd--~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~ 502 (753)
T COG1193 432 VATTHYRELKALAAEREGVENASMEFD--AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEE 502 (753)
T ss_pred ehHhhHHHHHHHHhcchhhhchhhhhh--HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCch
Confidence 999999999999988899999999865 48999999999999999999999999999999999999887554
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-33 Score=288.83 Aligned_cols=185 Identities=28% Similarity=0.386 Sum_probs=172.6
Q ss_pred CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccch
Q 003681 491 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 566 (803)
Q Consensus 491 ~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stf 566 (803)
..+++++||+++ |++++|+||||+||||++|+|+++.+++|+|+++|+..+.++.+++++.+++..|++..+.|+|
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~f 92 (204)
T cd03282 13 DKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTF 92 (204)
T ss_pred cCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHH
Confidence 356799999999 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEE
Q 003681 567 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 567 s~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~ 646 (803)
+.||+++..+++.+++|+|+|+|||++|||+.++..+.+++++++.+.|+++|++||++++++......++.+.+|....
T Consensus 93 s~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~ 172 (204)
T cd03282 93 ASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQS 172 (204)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999998899999999999999877666788899998765
Q ss_pred e-CCceeeeeEEeeCcCC-CcHHHHHHHHcC
Q 003681 647 L-DGQTVPTWKLVDGICR-ESLAFETAKREG 675 (803)
Q Consensus 647 ~-~~~l~~tYkL~~G~~~-~S~al~iA~~~G 675 (803)
. ++++.++||+.+|.+. .|||+++|+.+.
T Consensus 173 ~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 173 INSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred cCCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 3 4888999999999999 999999999764
No 18
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7.9e-33 Score=307.58 Aligned_cols=521 Identities=19% Similarity=0.220 Sum_probs=347.7
Q ss_pred hhhhhhhccccCCCcccchhhccCCCC----------CCchHHHHHhhccCCCchHHH-----HHHHH--------HHHH
Q 003681 125 LGTATQIGAIPTEGIPCLLKVLLPSNC----------SGLPILYVRDLLLNPPAYEIA-----STIQA--------ICKL 181 (803)
Q Consensus 125 ~~ta~qlg~~~~~~ip~ll~~~lp~~~----------~~~~~~~~r~lll~pP~~~~a-----~~i~~--------~~~~ 181 (803)
--|-+-|-+.|++.=|+-.++-+-.+- +-.-++-||.|+-||-.-.=- +.||- ...-
T Consensus 241 ~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~ 320 (849)
T KOG0221|consen 241 QNTISALQIFPSESHPSKVKSGLKEGLSLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQM 320 (849)
T ss_pred cchHHHHHhcccccccchhhhhhhcchhHHHHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 346677778899988876666655542 122366788888887643211 11111 1122
Q ss_pred hcccCCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHHHHHHHHH
Q 003681 182 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASV 261 (803)
Q Consensus 182 ~~~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~c~~~~~ 261 (803)
|+..-.-+|...-+.+.+++|.+.-.-++-+.+.+. +.-+++++..+|.--..... +-.+.+.++-+++..
T Consensus 321 Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~stv~------~~~~i~~~~rslp~s~~~~~---~~~~~~~~~l~eia~ 391 (849)
T KOG0221|consen 321 LSRLLGRIKNVPLILKRMKSGHTKLSDWQVLYSTVY------SALGIRDACRSLPQSIQLFR---DIAQEFSDDLHEIAS 391 (849)
T ss_pred HHHHHhhcccHHHHHHHHhcCCceechHHHHHHHHH------HHHHHHHHHHhCccchhhhh---HHHHHHHHHHHHHHH
Confidence 333334456666677778888777766666666533 34445555555543222221 234667777888888
Q ss_pred HhhchhcccCCccccc-cCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCC
Q 003681 262 RIGEMISLDGESDQKI-CSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPL 340 (803)
Q Consensus 262 ~i~~~v~~~~~~~~~~-~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~ 340 (803)
.++.||.-++-.++.- .-...|-+++ ++.++....+-.-+.+ -.+++...+
T Consensus 392 ~~g~vIdF~~S~~~~r~Tv~~giD~el---------------------DE~r~~y~~lp~~Lt~-------vAr~e~~~L 443 (849)
T KOG0221|consen 392 LIGKVIDFEGSLAENRFTVLPGIDPEL---------------------DEKRRRYMGLPSFLTE-------VARKELENL 443 (849)
T ss_pred HhhheeccccccccceEEecCCCChHH---------------------HHHHHHHccchHHHHH-------HHHHHHHhh
Confidence 8888885443333210 0013333333 3333333322111110 011111223
Q ss_pred CCCCcceeeeccccceeeeccceecccccCCC-CccccCccc-cccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHH
Q 003681 341 GGPKGEILYAREHEAVWFKGKKFRPTVWASTP-GEEQIKQLK-PAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 418 (803)
Q Consensus 341 ~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~-~~~~i~~lv-~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~ 418 (803)
+..-. . ..+++++--.|...+..-+. .++.....- .....+... -+|.+.+..++.+.|.+.+.++.+-
T Consensus 444 ~~~~p----s--v~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~---l~~rnart~eLD~~~GDIy~~i~D~ 514 (849)
T KOG0221|consen 444 DSRIP----S--VSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEK---LHYRNARTKELDALLGDIYCEIRDQ 514 (849)
T ss_pred CCCCC----c--eeEEEeeceeeEEecccccchhhcCCcccchHHHhcccce---eEeecccHHhHHHHhhhHHHhhhhh
Confidence 21111 1 22333332234433221111 111111100 011122222 2456667777778888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccCccccccCCCceeee
Q 003681 419 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHN 498 (803)
Q Consensus 419 ~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~~~~~~~~~Vln 498 (803)
...++-.|..++...-..|.....+.+-.+.+.++|..+..++|.+|.++++. -.+.+++-+|.......+.+|||
T Consensus 515 et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~----~il~I~ngrh~l~e~~~dtfvPN 590 (849)
T KOG0221|consen 515 ETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV----LILRIQNGRHPLMELCADTFVPN 590 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH----HHHHHHcCChhHHHHHHHhcCCC
Confidence 77777777777766555565555566677888888888899999999999761 01223333444344445789999
Q ss_pred ccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHH
Q 003681 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 499 dVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~ 574 (803)
++.. |++.+|||||.||||.+||+++.++.++++|+|||++.+.++..|+||++|..-+++..++|+|+.++.|++
T Consensus 591 st~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva 670 (849)
T KOG0221|consen 591 STEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVA 670 (849)
T ss_pred ceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHH
Confidence 9988 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC---EEEEEccChhhhhCcccccc--cccceeEEE-EeC
Q 003681 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC---LGIVSTHLHGIFSLPLKIKN--AAYKAMGTE-YLD 648 (803)
Q Consensus 575 ~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~---tvIivTH~~el~~l~~~~~~--v~~~~m~~~-~~~ 648 (803)
.++..++..||+|+||.|.||+..+|..+...++.++.+.|. +|+++||++++.....-..+ +.+..|... .+.
T Consensus 671 ~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~g 750 (849)
T KOG0221|consen 671 KALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDG 750 (849)
T ss_pred HHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhcc
Confidence 999999999999999999999999999999999999987764 59999999999875433222 334444432 245
Q ss_pred CceeeeeEEeeCcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Q 003681 649 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 695 (803)
Q Consensus 649 ~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~~ 695 (803)
+.++|.||+.+|....|+|+.+|+.+|+|+.||.||++++..++...
T Consensus 751 e~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~ 797 (849)
T KOG0221|consen 751 EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGK 797 (849)
T ss_pred CCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999999999999999987553
No 19
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.7e-33 Score=288.17 Aligned_cols=184 Identities=33% Similarity=0.485 Sum_probs=169.4
Q ss_pred CceeeeccCCC----cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHH
Q 003681 493 GSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 493 ~~~VlndVsLG----ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~ 568 (803)
+++|+||++++ ++++|+||||+|||||||+|+....+++.|+++|+..+.++.+++++.+++..+++..+.|+|+.
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~ 94 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMI 94 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHH
Confidence 57999999992 68999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc---CCEEEEEccChhhhhCcc--cccccccceeE
Q 003681 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTHLHGIFSLPL--KIKNAAYKAMG 643 (803)
Q Consensus 569 em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~---g~tvIivTH~~el~~l~~--~~~~v~~~~m~ 643 (803)
+|+++..++..+.+++|+|||||++|||+.++..++.++++++.+. +.++|++||+++++.... ..+.+.+++|.
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~ 174 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTME 174 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEE
Confidence 9999999999999999999999999999999999988999999765 358999999999987764 45678899998
Q ss_pred EEEe------CCceeeeeEEeeCcCCCcHHHHHHHHcCC
Q 003681 644 TEYL------DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 644 ~~~~------~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
+..+ .+++.|+||+.+|+++.|||+++|+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 175 VLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8665 47899999999999999999999999996
No 20
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=9.4e-33 Score=282.33 Aligned_cols=184 Identities=28% Similarity=0.379 Sum_probs=170.3
Q ss_pred CCceeeeccCC--CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 492 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 492 ~~~~VlndVsL--Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
.+++|+||+++ |++++||||||||||||||+|++.+++++.|+++|+....++ .+.+|..++..|++..+.+.|..+
T Consensus 12 ~~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~e 90 (199)
T cd03283 12 REKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGISYFYAE 90 (199)
T ss_pred CCCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccchhccccccChHHHH
Confidence 35789999999 789999999999999999999999999999999999877666 788999999999999999999999
Q ss_pred HHHHHHHHHhCC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003681 570 MSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 570 m~~l~~iLa~a~--~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~ 647 (803)
++++..++..+. +|+++|+|||++|||+.++..+...+++.+.+.|.++|++||+++++......+++.+.+|....+
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~ 170 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDID 170 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEE
Confidence 999999999988 999999999999999999998877888888888999999999999998777778889999999888
Q ss_pred CCceeeeeEEeeCcCCCcHHHHHHHHcCC
Q 003681 648 DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 648 ~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
++.+.++|++.+|+|+.|||+++|++.|+
T Consensus 171 ~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 171 DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999999986
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.98 E-value=8.7e-32 Score=274.88 Aligned_cols=185 Identities=43% Similarity=0.640 Sum_probs=173.4
Q ss_pred CCceeeeccCC--CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 492 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 492 ~~~~VlndVsL--Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
..++++||+++ |++++|+||||||||||||+|++..++++.|.++|+....++.+++++.+++..+++..+.|+|+.+
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e 95 (202)
T cd03243 16 GETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAE 95 (202)
T ss_pred CCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHH
Confidence 46799999999 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCC
Q 003681 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 649 (803)
Q Consensus 570 m~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~ 649 (803)
++++..+++.+.+|+++|+|||++|||+.++..+.+.+++.+.+.++++|++||+.++.........+.+++|.....++
T Consensus 96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence 99999999999999999999999999999999988888998888899999999999999888777788888998887778
Q ss_pred ceeeeeEEeeCcCCCcHHHHHHHHcCC
Q 003681 650 QTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 650 ~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
++.++|++.+|.+..|||+++|+++|+
T Consensus 176 ~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 176 GLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 899999999999999999999999986
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.97 E-value=6.7e-31 Score=268.12 Aligned_cols=183 Identities=30% Similarity=0.477 Sum_probs=164.6
Q ss_pred CCceeeeccCC--C-cEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccc-ccccchHHHhhhCCcCCCccCCccchH
Q 003681 492 EGSAVHNTVDM--Q-SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndVsL--G-ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~i~~~d~l~~~~Stfs 567 (803)
..+++.+++++ + ++++|+||||||||||||+|+...+++|.|+++|+.. ..++.+++++..++..+++..+.++|+
T Consensus 14 ~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs 93 (200)
T cd03280 14 GEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS 93 (200)
T ss_pred CCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHH
Confidence 45788999998 4 4899999999999999999998889999999999975 567888999999998899999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003681 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~ 647 (803)
.+|+++..++..+.+|+++|+|||++|||+.++..+...+++.+.+.+.++|++||+.++..+.++...+..+++.++
T Consensus 94 ~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~-- 171 (200)
T cd03280 94 SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD-- 171 (200)
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe--
Confidence 999999999888999999999999999999999999878899988889999999999988887777767777777544
Q ss_pred CCceeeeeEEeeCcCCCcHHHHHHHHcCC
Q 003681 648 DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 648 ~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
.+++.++|++.+|.++.|||+++|+++|+
T Consensus 172 ~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 172 PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 57899999999999999999999999996
No 23
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=192.18 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=112.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccc--------------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA--------------E 539 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa--------------~ 539 (803)
|+++++++.| ++..|+++|++ |++++|+||+|||||||||+|.++..+...-..+-. +
T Consensus 3 i~i~~l~K~f----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 3 IEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred EEEEeeeEEe----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 6788898877 57899999999 899999999999999999999998743322111111 1
Q ss_pred cccccchHHHhhhCCcCCCcc--------------------------------CCccchHHHHHHHHHHH-HhCCCCeEE
Q 003681 540 SASIPYFDAIMLHMKSYDSPA--------------------------------DGKSSFQVEMSEIRSIV-TATTSRSLV 586 (803)
Q Consensus 540 ~a~i~~~d~I~~~i~~~d~l~--------------------------------~~~Stfs~em~~l~~iL-a~a~~psLL 586 (803)
.+.+++-.++|.++++.+|+. ...+.+|.+.+|...|. +.+.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 123444445565555555543 33345667766654433 348999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
|+|||||+|||+....+. .++..|++.|.|.|++||.+.++..
T Consensus 159 LFDEPTSALDPElv~EVL-~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 159 LFDEPTSALDPELVGEVL-DVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred eecCCcccCCHHHHHHHH-HHHHHHHHcCCeEEEEechhHHHHH
Confidence 999999999999999987 8999999999999999999999864
No 24
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1e-20 Score=194.86 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=114.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-----h-----------hcCccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----G-----------ICGLMV 536 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-----a-----------q~G~~V 536 (803)
.+.++++++.| +++.+++|+|| |++++++||||+||||++|+|.|++.. . ....|+
T Consensus 2 ~L~ie~vtK~F----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyL 77 (300)
T COG4152 2 ALEIEGVTKSF----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77 (300)
T ss_pred ceEEecchhcc----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccC
Confidence 36778888876 57889999999 899999999999999999999999822 1 122356
Q ss_pred ccccccccc---h---------------------HHHhhhCCcCCCccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCC
Q 003681 537 PAESASIPY---F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i~~---~---------------------d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP 591 (803)
|.+++..+- . +.++.++...+.......++|.+++|..+.++ .+.+|+|+|||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 666543321 1 23445556666666667788999988666554 5999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 592 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 592 ~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
||||||.+...+ ...+..+++.|+||||+||.++-++
T Consensus 158 FSGLDPVN~elL-k~~I~~lk~~GatIifSsH~Me~vE 194 (300)
T COG4152 158 FSGLDPVNVELL-KDAIFELKEEGATIIFSSHRMEHVE 194 (300)
T ss_pred ccCCChhhHHHH-HHHHHHHHhcCCEEEEecchHHHHH
Confidence 999999998777 4677778899999999999997654
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=198.00 Aligned_cols=148 Identities=22% Similarity=0.281 Sum_probs=109.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------hcCcc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLM 535 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------q~G~~ 535 (803)
.+.++|++-.| .++ .|++||+| |++++|+||||||||||+|+|+|++... ..-.|
T Consensus 4 ~i~v~nl~v~y---~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSY---GNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred EEEEeeeEEEE---CCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 36777776554 223 69999999 8999999999999999999999987321 12346
Q ss_pred cccccc---cccc---------------------------hHHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 536 VPAESA---SIPY---------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 536 Vpa~~a---~i~~---------------------------~d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
||+... .+|. ++..+.+++..+......+.+|.+.+|... +.+.+++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 777431 1111 122334455555555566777877666544 444599999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
|+|||||+.|+|+.....+. .++..+++.|+||+++|||++...
T Consensus 160 lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred EEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhH
Confidence 99999999999999888886 899999888999999999998754
No 26
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=4e-20 Score=200.01 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=116.1
Q ss_pred EEEeccCccccccCC-CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcC--------------
Q 003681 478 LKMNGLSPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG-------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~-~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G-------------- 533 (803)
+.+.++++.| + ++.+++++|| |++++|+||||||||||||+|+|++... ..|
T Consensus 5 i~~~~l~k~~----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 5 IEVRNLTKKY----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeecceEEEe----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 4556777665 3 5799999999 8999999999999999999999998321 111
Q ss_pred cccccccccccc------------------------hHHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEE
Q 003681 534 LMVPAESASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~~------------------------~d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLL 588 (803)
.++|+.....+. ++.++..++..+......+.||.+|++... +.+.+.+|+|+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 244443321111 122344444444223446789999998655 5566999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhhC-cccccccccceeEEE
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSL-PLKIKNAAYKAMGTE 645 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g-~tvIivTH~~el~~l-~~~~~~v~~~~m~~~ 645 (803)
||||+||||..+..+. .+++.+.+.| .||+++||.++.++. +++..-+..+.+.+.
T Consensus 161 DEPt~GLDp~~~~~~~-~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 161 DEPTSGLDPESRREIW-ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred CCCCcCCCHHHHHHHH-HHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999888885 8888887776 899999999987754 444444445555443
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.4e-20 Score=192.09 Aligned_cols=150 Identities=20% Similarity=0.252 Sum_probs=109.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccc--c-ccccccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV--P-AESASIP 544 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~V--p-a~~a~i~ 544 (803)
.+.++++.+.| ++..|++|+|| |+++.|+||+|||||||||+|+|+..... .|..+ | .+.++++
T Consensus 3 ~l~i~~v~~~f----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSF----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEe----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe
Confidence 35667776665 34789999999 89999999999999999999999984322 22221 0 0123333
Q ss_pred chHHHhhhCCcCCC-------------------------------ccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCCC
Q 003681 545 YFDAIMLHMKSYDS-------------------------------PADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEIC 592 (803)
Q Consensus 545 ~~d~I~~~i~~~d~-------------------------------l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP~ 592 (803)
|-+.+|...++.|| ........|.+|+|...+.+ .+.+|+++||||||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 33333333333333 23334466889998766544 49999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
++||...+..+...+++.+.+.+.|++++|||.+++-+
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 99999999999988888888999999999999988743
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=4.8e-20 Score=194.45 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=109.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH--------------------hhhhcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~--------------------~laq~G 533 (803)
+.+++++-.| +++.+++|+|| |++++|+||||||||||||+|+|++ .+|+.-
T Consensus 3 L~~~~ls~~y----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 3 LEVENLSFGY----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eEEEEEEEEE----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4566665444 47899999999 8999999999999999999999987 234455
Q ss_pred cccccccc---cccch-------------------------HHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 534 LMVPAESA---SIPYF-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a---~i~~~-------------------------d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
.|+|+... .+..+ +..+..++..+.........|.+-+|... +.+.+++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 67776531 11111 11233334444444455667777666554 444599999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~-l~~~ 633 (803)
++||||||+.||......++ .+++.+. ++|.|+|+++||++++. ++++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl-~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVL-ELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred EEEeCCCccccCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999999998 6777775 67999999999999874 4443
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.5e-19 Score=187.29 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=109.3
Q ss_pred EEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----------------
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG---------------- 533 (803)
Q Consensus 479 ~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G---------------- 533 (803)
.++++.+.|........++++++| |++++|+||+||||||||++|+|+..... .|
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 456666655433333678999999 89999999999999999999999873311 11
Q ss_pred ---cccccccccccch---HH---------------------HhhhCCcCCCcc-CCccchHHHHHHHHHH-HHhCCCCe
Q 003681 534 ---LMVPAESASIPYF---DA---------------------IMLHMKSYDSPA-DGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 534 ---~~Vpa~~a~i~~~---d~---------------------I~~~i~~~d~l~-~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
.||.+....++.+ ++ +...++..+... ...+.+|.+.+|...| .+.+.+|+
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~ 162 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK 162 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC
Confidence 1222222222111 11 122223333333 3345667776665543 44489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCcccccccccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
+||.||||.+||+..+..+. .++..+ .+.|+|+|++|||.+++.++++...+..+
T Consensus 163 iilADEPTgnLD~~t~~~V~-~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 163 IILADEPTGNLDSKTAKEVL-ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred eEEeeCccccCChHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 99999999999999999998 555555 56699999999999999988765544444
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=9.3e-20 Score=187.96 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=118.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccc---------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA--------- 538 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa--------- 538 (803)
.+++++++..+ +++.|+++++| |++++|+||+|+|||||||+|.|+..... .|..++.
T Consensus 8 ~I~vr~v~~~f----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 8 LIEVRGVTKSF----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred eEEEeeeeeec----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 47788887665 67899999999 89999999999999999999999873322 2222222
Q ss_pred --ccccccchHHHhhhCCcCCCccCC---------------------------------ccchHHHHHHHHH-HHHhCCC
Q 003681 539 --ESASIPYFDAIMLHMKSYDSPADG---------------------------------KSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 539 --~~a~i~~~d~I~~~i~~~d~l~~~---------------------------------~Stfs~em~~l~~-iLa~a~~ 582 (803)
.-+.++|...+|+.+++.||+... .+.+|.+|++... +.|.+.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 113455666778888877776543 2455677876554 3344899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccccccccceeEE
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~~ 644 (803)
|+|+++||||+||||.....+- .++..++ .-|.|++++|||.+.. ..+++..-+.++++.+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 9999999999999999888875 6666664 5699999999998654 4445444444444443
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.81 E-value=2.2e-19 Score=195.30 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=113.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G 533 (803)
.+.++++++.| +++.+++++|| |++++|+||||||||||+|+|+|+.... +.-
T Consensus 7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 47788887765 34679999999 8999999999999999999999987211 112
Q ss_pred ccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEE
Q 003681 534 LMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLL 588 (803)
.++|++....+ ..+. ++..++..+........+|.+|++... +.+.+.+|+++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 24444432221 1111 111222222223345678888887654 4455999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~ 643 (803)
||||+|||+.....+. .+++.+++.|.|+|++||+++++ .++++...+..+.+.
T Consensus 163 DEPt~gLD~~~~~~l~-~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 163 DEPTTGLDPQARHLMW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999988885 67777777799999999999876 456555444444443
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.80 E-value=2.9e-19 Score=197.04 Aligned_cols=163 Identities=18% Similarity=0.156 Sum_probs=113.6
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hc
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------IC 532 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~ 532 (803)
..+.++|+++.| +++.+++|+|| |++++|+||||||||||||+|+|+.... +.
T Consensus 40 ~~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 347888888766 35679999998 8999999999999999999999987211 11
Q ss_pred Ccccccccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEE
Q 003681 533 GLMVPAESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVL 587 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLL 587 (803)
-.++|++.... ...+. ++..++..+........+|.+|++...+ .+.+.+|+++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12344432221 11111 1222233222334456788898886654 44589999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~ 643 (803)
|||||+|||+.....+. .++..+.+.|.|+|++||+++.. +++++...+..+.+.
T Consensus 196 LDEPt~gLD~~~r~~l~-~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 196 LDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred EECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999998886 67777776799999999999876 455554444444443
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.9e-20 Score=185.40 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=113.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccc--------c----cccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV--------P----AESA 541 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~V--------p----a~~a 541 (803)
+.+.++++.|. .....+.|++| |++++|.||||+||||+||+|+.++...+.-..+ | ...+
T Consensus 2 l~v~~l~K~y~---~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYG---SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhcc---CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 45667777662 23347899999 8999999999999999999999998655432221 1 1112
Q ss_pred cccchHHHhhhCCcCCCcc-------------------------------CCccchHHHHHHHHHHH-HhCCCCeEEEEe
Q 003681 542 SIPYFDAIMLHMKSYDSPA-------------------------------DGKSSFQVEMSEIRSIV-TATTSRSLVLID 589 (803)
Q Consensus 542 ~i~~~d~I~~~i~~~d~l~-------------------------------~~~Stfs~em~~l~~iL-a~a~~psLLLLD 589 (803)
.++.-..+|.+++..+|+. .....||.+|++...+. +.+.+|+++++|
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 2222223455555554442 22235677787765544 348999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeE
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m~ 643 (803)
||++|||......+- .++.++++.|.++||+||.++..+ ++++..-++.+++.
T Consensus 159 EP~sGLDi~~~r~~~-dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 159 EPTSGLDIRTRRKFH-DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred CCCCCccHHHHHHHH-HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 999999998888774 888899999999999999998765 66655555554443
No 34
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.78 E-value=7.1e-19 Score=181.03 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=94.0
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------------hcCccccccccccc-
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP- 544 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------------q~G~~Vpa~~a~i~- 544 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... +.-.++++....++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 579999998 8999999999999999999999986211 01122333221111
Q ss_pred --chH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 545 --YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 545 --~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
..+ .++..++..+........+|.++++... +.+.+.+|+++||||||+|||+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 111 1122223222223334567777777554 4445899999999999999999988
Q ss_pred HHHHHHHHHHHHh-cCCEEEEEccChhhhhCc
Q 003681 601 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 601 ~~L~~alle~L~~-~g~tvIivTH~~el~~l~ 631 (803)
..+. .+++.+.+ .|.++|++||+.+....+
T Consensus 177 ~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~ 207 (218)
T cd03255 177 KEVM-ELLRELNKEAGTTIVVVTHDPELAEYA 207 (218)
T ss_pred HHHH-HHHHHHHHhcCCeEEEEECCHHHHhhh
Confidence 8886 66666655 689999999999876543
No 35
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=1.7e-19 Score=187.03 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=106.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccc-------------cc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-------------ES 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa-------------~~ 540 (803)
++++++++.| +++.+++|+|| |++++++||+||||||+||||.+++.....-.++.. ..
T Consensus 2 I~~~nvsk~y----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRY----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhc----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4677887776 37889999999 899999999999999999999998733221111110 01
Q ss_pred ccccchHHHhhhCCcCCCcc---------------------------------CCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 541 ASIPYFDAIMLHMKSYDSPA---------------------------------DGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 541 a~i~~~d~I~~~i~~~d~l~---------------------------------~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
+++-+--.+|.++++.+|+. ...+.+|.+.+|..- +.+.+.+|.++
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 12222223444444444432 223344555555444 44458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
||||||+++||..+..+-..+.+.-++.|+|+||+|||++++ .++++.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 999999999999999998777766678899999999999886 455443
No 36
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-18 Score=179.94 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=95.2
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------hcCccccccccccc---chHH---
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---YFDA--- 548 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------q~G~~Vpa~~a~i~---~~d~--- 548 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... +...++|+....++ ..++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 579999998 8999999999999999999999986221 11123443321111 1111
Q ss_pred ------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003681 549 ------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 549 ------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle 609 (803)
++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~-~~l~ 175 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ-EELL 175 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH-HHHH
Confidence 122223222223334567888877554 44458999999999999999999998887 5555
Q ss_pred HH-HhcCCEEEEEccChhhh-hCccc
Q 003681 610 TL-DNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 610 ~L-~~~g~tvIivTH~~el~-~l~~~ 633 (803)
.+ .+.|.++|++||+.+.. .++++
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 55 45589999999999854 44443
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.78 E-value=1.3e-18 Score=179.13 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=99.6
Q ss_pred EEEeccCccccccCCC-ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 478 LKMNGLSPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~-~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
+.+++++..| .++ +.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 2 l~~~~l~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 2 IRFEQVSKAY---PGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred eEEEEEEEEe---cCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHH
Confidence 3455665443 222 469999998 8999999999999999999999986211
Q ss_pred -hcCccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 531 -ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
+.-.+++++...++ ..++ ++..++..+........+|.++++... +.+.+.+|+
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (216)
T TIGR00960 79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP 158 (216)
T ss_pred HHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11123333322111 1111 122223222233334567777776554 444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
++||||||+|||+.....+. .++..+.+.|.++|++||+.++..
T Consensus 159 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 159 LLLADEPTGNLDPELSRDIM-RLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 99999999999999988887 666677667899999999998764
No 38
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=2.1e-19 Score=197.10 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=120.3
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------cCccccccc---
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAES--- 540 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------~G~~Vpa~~--- 540 (803)
..+.++++++.| ++..+++|+|+ |+++.|+|||||||||+||+|+|+..... .-..+|.+.
T Consensus 4 ~~l~i~~v~k~y----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeec----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 357888998877 36899999999 89999999999999999999999984322 122345532
Q ss_pred ccccchHHHhhhCCcCCCccCCcc--------------------------------chHHHHHHH-HHHHHhCCCCeEEE
Q 003681 541 ASIPYFDAIMLHMKSYDSPADGKS--------------------------------SFQVEMSEI-RSIVTATTSRSLVL 587 (803)
Q Consensus 541 a~i~~~d~I~~~i~~~d~l~~~~S--------------------------------tfs~em~~l-~~iLa~a~~psLLL 587 (803)
+.+++-..+|.+|++.+|+..++. ..|.+.+|. +.+.+.+.+|.++|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 556666778999999999776654 112232222 22333489999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
||||.++||..-+..+...+.+...+.|.|.|++|||.+.+ .+.++...+..+
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 99999999999999998777777788899999999999876 344444333333
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.4e-18 Score=178.49 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------cCcccc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CGLMVP 537 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------~G~~Vp 537 (803)
+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... ...++|
T Consensus 3 ~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 3 LKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred eeeeEEEe----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 44554433 23578999998 89999999999999999999999862110 012334
Q ss_pred cccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCC
Q 003681 538 AESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 592 (803)
Q Consensus 538 a~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~ 592 (803)
++...+ ...+. ++..++..+........+|.++++...+ .+.+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 332111 11111 1122222222223345677787775554 4458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcc
Q 003681 593 RGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~ 632 (803)
+|||+.....+. .++..+.+ .|.++|++||+.++. .+++
T Consensus 159 ~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 159 SALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALAD 199 (213)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcC
Confidence 999999988886 56666654 589999999999864 3444
No 40
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.78 E-value=9.5e-19 Score=175.65 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=100.5
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc------ccccc-----cccccchHHHhhhCCcCCC
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVPAE-----SASIPYFDAIMLHMKSYDS 558 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~------~Vpa~-----~a~i~~~d~I~~~i~~~d~ 558 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... .|. .+... ...+....+++..++..+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 568999988 8999999999999999999999986332 221 11110 0122333335556666655
Q ss_pred ccCCccchHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhh-hCccc
Q 003681 559 PADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 559 l~~~~Stfs~em~~l~~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~-~l~~~ 633 (803)
.......+|.++++...+. +.+.+|+++||||||+|+|+.....+. .+++.+.++ +.++|++||+.+.. +++++
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 5566677888887755544 458999999999999999999888886 666666655 89999999999875 44443
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.78 E-value=1.6e-18 Score=188.08 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=108.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.... ...
T Consensus 4 ~i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 36677777655 34679999998 8999999999999999999999986211 111
Q ss_pred cccccccccc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEE
Q 003681 534 LMVPAESASI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLL 588 (803)
.++|+..... ...+.+ +..++..+........+|.++++... +.+.+.+|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2344432211 111211 11222222223334577888877655 4445899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
||||+|||+.....+. .+++.+.+.|.|+|++||++++.. ++++...+..+.
T Consensus 160 DEPt~gLD~~~~~~l~-~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 160 DEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 9999999999988886 666777667999999999998764 455443333333
No 42
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.5e-19 Score=176.94 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=91.8
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCcccc-------cccccccchHHHhhhCCcCC
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVP-------AESASIPYFDAIMLHMKSYD 557 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vp-------a~~a~i~~~d~I~~~i~~~d 557 (803)
+.++++++| |++++|+||||||||||+|+|+|+..... .|..+. ...+++++...++..++..+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence 468999998 89999999999999999999999863211 111110 01122222222333333444
Q ss_pred CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 558 SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 558 ~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
++. +|.++++... +.+.+.+|+++|+||||+|+|+.....+. .+++.+.++|.++|++||+.++..
T Consensus 93 ~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 93 NLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred Hhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHH
Confidence 432 6777766544 45558999999999999999999988887 666677666899999999998764
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.4e-18 Score=179.31 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=99.9
Q ss_pred EEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCcc
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLM 535 (803)
Q Consensus 479 ~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~~ 535 (803)
.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... +.-.+
T Consensus 2 ~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 2 EVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred EEEEEEEEE----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 345554443 24578999998 8999999999999999999999986211 01123
Q ss_pred ccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeC
Q 003681 536 VPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDE 590 (803)
+|++....+ ..+. ++..++..+........+|.++++... +.+.+.+|+++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 444322111 1111 112222222223334567777776554 445589999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh-Ccccc
Q 003681 591 ICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 591 P~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~-l~~~~ 634 (803)
||+|+|+.....+. .+++.+.+. |.++|++||+.+... ++++.
T Consensus 158 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i 202 (220)
T cd03265 158 PTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202 (220)
T ss_pred CccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999888886 666666554 899999999998754 44433
No 44
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.7e-18 Score=171.35 Aligned_cols=124 Identities=36% Similarity=0.477 Sum_probs=99.8
Q ss_pred eeeeccCCC--cEEEEEcCCCCCchHHHHHHHHhHhhhh----------cCcccccccccccchHHHhhhCCcCCCccCC
Q 003681 495 AVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGI----------CGLMVPAESASIPYFDAIMLHMKSYDSPADG 562 (803)
Q Consensus 495 ~VlndVsLG--ei~~ItGPNGsGKSTLLr~Iagl~~laq----------~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~ 562 (803)
.+++++.+. .+.+|||||||||||++|+|+.+..+++ .|+++|+....+ ++..++
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~~~~-------- 77 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ-------- 77 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehheee--------
Confidence 567888884 4999999999999999999999999988 888888776544 333332
Q ss_pred ccchHHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 563 KSSFQVEMSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 563 ~Stfs~em~~l~~iLa~a~--~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
.|..+.++..+..++.... +|+++|+|||++|||+.++..+...+.+.+.+ ++++|++||+.++....+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELAD 148 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhh
Confidence 4444555555666666644 89999999999999999999999888877766 899999999999987653
No 45
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.77 E-value=2.7e-18 Score=177.15 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=100.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|-...+.+.++++++| |++++|+||||||||||||+|+|+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 3455665444111112578999998 8999999999999999999999986210
Q ss_pred -hcCcccccccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 531 -ICGLMVPAESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
+.-.++++....+ ...++ ++..++..+........+|.++++... +.+.+.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 1122344432111 11111 122223322233344567778777554 444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~ 631 (803)
++||||||+|||+.....+. .++..+.+ .|.++|++||+.+.....
T Consensus 162 illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~ 208 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKL 208 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 99999999999999988886 66666654 589999999999876543
No 46
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=5.9e-19 Score=179.04 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=103.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-hhcCccc-c---------cccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMV-P---------AESA 541 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-aq~G~~V-p---------a~~a 541 (803)
.+.+++++..|.....++.++++++| |++++|+||||||||||+|+|+|+... ...|... . ...+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 35667776554211113579999998 899999999999999999999997421 1222111 0 0112
Q ss_pred cccchHHHhhhCCcCCCccCCc--cchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Q 003681 542 SIPYFDAIMLHMKSYDSPADGK--SSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 618 (803)
Q Consensus 542 ~i~~~d~I~~~i~~~d~l~~~~--Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tv 618 (803)
++++...++..++..+++.... ..+|.++++...+ .+.+.+|+++|+|||++|+|+.....+. .+++.+.+.|.|+
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ti 161 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAI 161 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEE
Confidence 2233223344444444443211 1677777765544 4458999999999999999999888886 6677777678999
Q ss_pred EEEccChhh--hhCcc
Q 003681 619 IVSTHLHGI--FSLPL 632 (803)
Q Consensus 619 IivTH~~el--~~l~~ 632 (803)
|++||+.+. ...++
T Consensus 162 iivtH~~~~~~~~~~d 177 (192)
T cd03232 162 LCTIHQPSASIFEKFD 177 (192)
T ss_pred EEEEcCChHHHHhhCC
Confidence 999999873 44444
No 47
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.77 E-value=1.5e-18 Score=177.47 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=99.0
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------hcCcccc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVP 537 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------q~G~~Vp 537 (803)
+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +.-.++|
T Consensus 3 ~~~l~~~~----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 3 TNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred EEEEEEEE----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 45555443 24579999998 8999999999999999999999986211 0112344
Q ss_pred ccccccc---chHHH-----------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCC
Q 003681 538 AESASIP---YFDAI-----------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 538 a~~a~i~---~~d~I-----------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD 596 (803)
++...++ ..+++ +..++..+........+|.++++... +.+.+.+|+++||||||+|||
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 4322111 11111 11222222222233456677766544 444589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.....+. .+++.+.+.|.++|++||+.++.. ++++
T Consensus 159 ~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~ 195 (208)
T cd03268 159 PDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADR 195 (208)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCE
Confidence 99988886 666777667899999999998764 4443
No 48
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=6.2e-19 Score=175.93 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=90.9
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cccccc--------ccccccchHHHhhhCCcC
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVPA--------ESASIPYFDAIMLHMKSY 556 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vpa--------~~a~i~~~d~I~~~i~~~ 556 (803)
+.+++++++ |++++|+||||+|||||+|+|+|+...... |..+.. ..+++++...++. .+..
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIA 93 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHH
Confidence 468899888 899999999999999999999998643211 111100 0111222212222 1233
Q ss_pred CCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 557 DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 557 d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
+++ +|.++++... +.+.+.+|+++||||||+|+|+.....+. .+++.+.+.|.++|++||+.++...+
T Consensus 94 ~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~ 162 (173)
T cd03246 94 ENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIAHRPETLASA 162 (173)
T ss_pred HHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 333 6777776554 44458999999999999999999988886 66677766789999999999876543
No 49
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=182.85 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=106.0
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------hcCccc
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMV 536 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------q~G~~V 536 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +...++
T Consensus 11 ~~l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 11 TPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CcEEEEEEEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence 357788887655 24679999998 8999999999999999999999986221 011234
Q ss_pred cccccccc---chH---------------HHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCH
Q 003681 537 PAESASIP---YFD---------------AIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 537 pa~~a~i~---~~d---------------~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~ 597 (803)
+++...++ ..+ .++..++..+........+|.++++...+ .+.+.+|+++||||||+|||+
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 44322111 111 12223333333334456778888776554 445899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccc
Q 003681 598 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 598 ~~g~~L~~alle~L-~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
.....+. .+++.+ .+.|.++|++||+.+.. .++++.
T Consensus 167 ~~~~~l~-~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 167 LTRIEMQ-DLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 9988887 555555 45689999999999875 445443
No 50
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.77 E-value=2.2e-18 Score=186.86 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=102.1
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCcccccccccccc---h
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIPY---F 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~~Vpa~~a~i~~---~ 546 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... ..-.++|+.....+. .
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4578999998 8999999999999999999999987211 011234443222111 1
Q ss_pred H---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 003681 547 D---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 547 d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~ 604 (803)
+ .++..++..+......+.+|.++++... +.+.+.+|+++||||||+|||+.....+.
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1 1222333333333445678888887655 44558999999999999999999888886
Q ss_pred HHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003681 605 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 605 ~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
.+++.+.+.|.|+|++||+++... ++++...+..+.
T Consensus 165 -~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 165 -DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred -HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 677777777999999999998764 455443333333
No 51
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=1.6e-18 Score=177.19 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=95.9
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------hcCcccccccc-cc---cchH-
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMVPAESA-SI---PYFD- 547 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------q~G~~Vpa~~a-~i---~~~d- 547 (803)
+.++++++| |++++|+||||||||||||+|+|+.... +.-.+++++.. .+ ...+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 578999988 8999999999999999999999986211 01123344321 00 1111
Q ss_pred ----------------HHhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003681 548 ----------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIET 610 (803)
Q Consensus 548 ----------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~ 610 (803)
.++..++..+........+|.++++...+. +.+.+|+++||||||+|+|+.....+. .+++.
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 171 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG-ELIRE 171 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHH
Confidence 122233333333334456788887765544 458999999999999999999888886 67777
Q ss_pred HHhcCCEEEEEccChhhhh-Ccc
Q 003681 611 LDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 611 L~~~g~tvIivTH~~el~~-l~~ 632 (803)
+.+.|.++|++||+.+... +++
T Consensus 172 ~~~~~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 172 LAAQGKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCC
Confidence 7667899999999998764 444
No 52
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.77 E-value=2e-18 Score=177.24 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=99.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..| .+++.+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 2 l~~~~l~~~~---~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAY---PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEe---CCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3456665443 124579999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 531 ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
+...+++++...++ ..++ ++..++..+........+|.++++... +.+.+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 01123333321111 1111 112222222223334567777776554 4445899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+||||||+|+|+.....+. .+++.+.+.|.++|++||+.+...
T Consensus 159 llLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERIL-DLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 9999999999999988886 666666667899999999988764
No 53
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=7.2e-19 Score=176.23 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=92.1
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cccccc----------ccccccchHHHhhhC
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVPA----------ESASIPYFDAIMLHM 553 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vpa----------~~a~i~~~d~I~~~i 553 (803)
++.++++++| |++++|+||||+|||||+|+|+|+...... |..+.. ..+++++...++...
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 3578999988 899999999999999999999998632211 111100 011222222223233
Q ss_pred CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh
Q 003681 554 KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS 629 (803)
Q Consensus 554 ~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~ 629 (803)
+..+++... +|.++++... +.+.+.+|+++|||||++|+|+.....+. .+++.+.+. |.++|++||+.++..
T Consensus 92 t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 92 TVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333333222 7777776554 45558999999999999999999888886 666677665 799999999998765
No 54
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.77 E-value=1.8e-18 Score=177.44 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=92.7
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------hcCccccccccccc--
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------ICGLMVPAESASIP-- 544 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------------q~G~~Vpa~~a~i~-- 544 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... +...+++++...++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 578999998 8999999999999999999999986211 01123333322111
Q ss_pred -chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHH
Q 003681 545 -YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 545 -~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~ 601 (803)
..++ ++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+....
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 1111 112222222222333566777776554 44458999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 602 CIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 602 ~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+. .+++.+.+.|.|+|++||+.+...
T Consensus 174 ~~~-~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 174 EIM-NLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHH-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 886 666667666899999999998764
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.4e-18 Score=176.27 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=98.3
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------cCcccccc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----------------CGLMVPAE 539 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----------------~G~~Vpa~ 539 (803)
+++++..| +++.++++++| |++++|+||||||||||+++|+|+..... ...++++.
T Consensus 3 ~~~l~~~~----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 3 VENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred EEEEEEEE----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccC
Confidence 44554433 24578999988 89999999999999999999999862110 11234443
Q ss_pred cccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCC
Q 003681 540 SASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 540 ~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sG 594 (803)
...+ ...++ ++..++...........+|.++++... +.+.+.+|+++||||||+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 2211 11111 111222222222333456777776554 4455899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
+|+.....+. .+++.+.+.|.++|++||+.++.. +++
T Consensus 159 LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 159 LDPVNVELLK-DVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred CCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 9999888886 566666666899999999998753 344
No 56
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.77 E-value=2.8e-18 Score=178.72 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=94.6
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c-Cccccccccccc---
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C-GLMVPAESASIP--- 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~-G~~Vpa~~a~i~--- 544 (803)
++.++++++| |++++|+||||||||||||+|+|+..... . -.++|+....++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4568999988 89999999999999999999999862110 0 123333321111
Q ss_pred chHH-------------------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCC
Q 003681 545 YFDA-------------------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 592 (803)
Q Consensus 545 ~~d~-------------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~ 592 (803)
..+. ++..++..+........+|.++++... +.+.+.+|+++||||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111 111222222222334566777776544 44458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+|+|+.....+. .+++.+.+.|.|+|++||+.++.. ++++
T Consensus 172 ~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~ 212 (236)
T cd03219 172 AGLNPEETEELA-ELIRELRERGITVLLVEHDMDVVMSLADR 212 (236)
T ss_pred ccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 999999888886 666666667899999999998763 3443
No 57
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.2e-18 Score=178.46 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=99.0
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----------------------c
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------------C 532 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----------------------~ 532 (803)
+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+..... .
T Consensus 3 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 3 LRGLTKSF----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred EEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 44554433 24578999998 89999999999999999999999862110 0
Q ss_pred Cccccccccccc---chHHH----------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 533 GLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~I----------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
..++|+....++ ..+++ +..++..+........+|.++++... +.+.+.+|+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 123343321111 11111 11222222223334567778777554 44558999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
||||||+|+|+.....+. .+++.+.+ .|.|+|++||+.+... ++++
T Consensus 159 llDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 159 LYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred EecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 999999999999888886 66666655 5899999999998653 4443
No 58
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.77 E-value=6.3e-19 Score=192.40 Aligned_cols=153 Identities=24% Similarity=0.263 Sum_probs=113.4
Q ss_pred eEEEeccCccccccCCCce-eeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCccc---c-c--cc
Q 003681 477 CLKMNGLSPYWFDAAEGSA-VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMV---P-A--ES 540 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~-VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~~V---p-a--~~ 540 (803)
.+.++|+.+.| +.. +++++|+ |++++|+||||||||||||+|+|+.... ..|..| | . ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 47788888877 333 9999999 8999999999999999999999998433 233333 2 2 23
Q ss_pred ccccchHHHhhhCCcCCCccCCcc-------------------------------chHHHHHHH-HHHHHhCCCCeEEEE
Q 003681 541 ASIPYFDAIMLHMKSYDSPADGKS-------------------------------SFQVEMSEI-RSIVTATTSRSLVLI 588 (803)
Q Consensus 541 a~i~~~d~I~~~i~~~d~l~~~~S-------------------------------tfs~em~~l-~~iLa~a~~psLLLL 588 (803)
+.++|...+|.+|++.+|+..++. .+|.+.+|. +...+.+.+|+++||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 667777788888888888766532 334444433 333444899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
|||.|+||..-+..+...+.+...+.|.|+|++|||..++ .++++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence 9999999999999987555554456799999999998665 445443
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=3e-18 Score=178.02 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=98.7
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------cCc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------CGL 534 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------~G~ 534 (803)
+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .-.
T Consensus 3 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 3 AENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred EEEEEEEe----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 44554443 24578999998 89999999999999999999999862110 011
Q ss_pred cccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
++++....++ ..++ ++..++..+........+|.++++... +.+.+.+|+++|||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 3333321111 1111 111222222222334567777776554 44558999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
|||+|+|+.....+. .+++.+.+.|.|+|++||+.+.. .++++
T Consensus 159 EPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~ 202 (232)
T cd03218 159 EPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDR 202 (232)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 999999999888886 67777766789999999999654 44443
No 60
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.76 E-value=2.5e-18 Score=176.17 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=94.7
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------hcCccccccccccc--
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESASIP-- 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------q~G~~Vpa~~a~i~-- 544 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|++...++
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 3578999988 8999999999999999999999986211 01123333322111
Q ss_pred -chHH----------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 545 -YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 545 -~~d~----------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
..++ ++..++...........+|.++++... +.+.+.+|+++||||||+|+|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1111 111222222223334567777776554 4445899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
..+. .+++.+.+.|.++|++||+.+... +++
T Consensus 172 ~~l~-~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 172 GEVL-DVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 8876 677777667899999999998763 443
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.9e-18 Score=178.04 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=98.5
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------hc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------IC 532 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------------q~ 532 (803)
+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+.... +.
T Consensus 3 ~~~l~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEec---CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 45555443 122679999998 8999999999999999999999986211 01
Q ss_pred Cccccccccccc---chHHH-----------------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHh
Q 003681 533 GLMVPAESASIP---YFDAI-----------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTA 579 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~I-----------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~ 579 (803)
-.++|++...++ ..+++ +..++..+........+|.++++... +.+.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 123343322111 11111 11122221222233466777776554 4445
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+|+++||||||+|+|+.....+. .+++.+.+ .|.++|++||+.+... ++++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 8999999999999999999988886 66666654 5899999999998765 4443
No 62
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=3e-18 Score=179.24 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=99.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||||+|+|+....
T Consensus 2 l~~~~l~~~~---~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeec---CCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 3456665444 124579999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chHHH-----------------------------hhhCCcCCCccCCccchHHHHHHHHH-HH
Q 003681 531 ICGLMVPAESASIP---YFDAI-----------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~I-----------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iL 577 (803)
+...++|++...++ ..+++ +..++..+........+|.++++... +.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 01123343322111 11111 11122222222334566777776554 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~ 632 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ .|+++|++||+.+.. ++++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 458999999999999999999888886 66666644 589999999999875 3444
No 63
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=1.9e-18 Score=177.03 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=94.5
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcCcccccccc-cc---cc
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESA-SI---PY 545 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G~~Vpa~~a-~i---~~ 545 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... +...++|+... .+ ..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 578999988 8999999999999999999999986211 11123343321 01 11
Q ss_pred hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 003681 546 FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 603 (803)
Q Consensus 546 ~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L 603 (803)
.++ ++..++..+......+.+|.++++... +.+.+.+|+++||||||+|||+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 222233332333445677888877554 4445899999999999999999998888
Q ss_pred HHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 604 AGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 604 ~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
. .+++.+.+.|.++|++||+.++..
T Consensus 174 ~-~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 174 L-ELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred H-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 7 566666666899999999998764
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.3e-18 Score=176.77 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=101.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|......+.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 5667776554211112579999998 8999999999999999999999986210
Q ss_pred -hcCcccccccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 531 -ICGLMVPAESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
+.-.+++++...+ ...++ ++..++..+........+|.++++... +.+.+.+|+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0112334332111 11111 122223222223334567777776554 444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhC
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l 630 (803)
++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+....
T Consensus 166 lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 166 LVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred EEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 99999999999999888886 66666654 58999999999988654
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.76 E-value=3e-18 Score=175.83 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=96.0
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c-------------Ccccc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C-------------GLMVP 537 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~-------------G~~Vp 537 (803)
+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... . -.+++
T Consensus 3 ~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 3 LENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred EEeeEEEE----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 44554433 24578999998 89999999999999999999999862110 0 11333
Q ss_pred cccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCC
Q 003681 538 AESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 592 (803)
Q Consensus 538 a~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~ 592 (803)
+....+ ...++ ++..++..+........+|.++++... +.+.+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 322111 11111 122222222223334566777776554 44458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh
Q 003681 593 RGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~ 629 (803)
+|+|+.....+. .+++.+.+ .|.|+|++||+.++..
T Consensus 159 ~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 159 SNLDAKLRVQMR-AELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 999999988886 56666654 5899999999997653
No 66
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=5.6e-18 Score=175.71 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=100.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
.+.+++++..|-.......++++++| |++++|+||||||||||+|+|+|+....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 35677776554110001358999998 8999999999999999999999986211
Q ss_pred --hcCcccccccccc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 531 --ICGLMVPAESASI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 531 --q~G~~Vpa~~a~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
....+++++...+ ...+++ ...++..+........+|.++++... +.+.+.+|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p 165 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0112334332211 111222 11222222222334566777776554 44458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~l~~ 632 (803)
+++||||||+|||+.....+. .+++.+. +.|.++|++||+.++...++
T Consensus 166 ~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d 214 (228)
T PRK10584 166 DVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAARCD 214 (228)
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 999999999999999888886 6666664 45899999999998765443
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.2e-18 Score=175.94 Aligned_cols=156 Identities=14% Similarity=0.194 Sum_probs=101.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|-...+...++++++| |++++|+||||||||||+|+|+|+....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3455665443110001279999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 531 ICGLMVPAESASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
....++|+....++ ..+++ +..++..+........+|.++++... +.+.+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11123444322211 11111 12222222223344567777776554 4455899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~ 634 (803)
+||||||+|+|+.....+. .++..+.+ .|.++|++||+.+.. .++++.
T Consensus 162 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 162 LLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRV 211 (233)
T ss_pred EEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999988886 66666654 489999999999875 345443
No 68
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=3.3e-18 Score=169.49 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=93.6
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccc-ccccchHHHhhhCC
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMK 554 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~i~ 554 (803)
+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.........+.... ......+..-..++
T Consensus 3 ~~~l~~~~----~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 3 LRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred EEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 44555443 24578999998 89999999999999999999999763322111111110 00110010001111
Q ss_pred cCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcc
Q 003681 555 SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 555 ~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~ 632 (803)
. ...+|.++++... +.+.+.+|+++|+||||+|+|+.....+. .+++.+.+.|.|+|++||+.+.. +.++
T Consensus 79 ~-------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 79 M-------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred E-------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 1 1127777776554 44558999999999999999999988886 66666766689999999999854 3444
No 69
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=2.4e-18 Score=175.74 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=97.3
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH-hhhhcC------ccccc---------ccccccchHHHhhh
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGICG------LMVPA---------ESASIPYFDAIMLH 552 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~-~laq~G------~~Vpa---------~~a~i~~~d~I~~~ 552 (803)
++.++++++| |++++|+||||+|||||+|+|+|+. .....| ..+.. ..+++++...++..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4579999998 8999999999999999999999984 111122 11100 01122332233333
Q ss_pred CCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh--
Q 003681 553 MKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-- 629 (803)
Q Consensus 553 i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-- 629 (803)
+...+.+......++.++++... +.+.+.+|+++||||||+|+|+.....+. .++..+.+.+.|+|++||+++...
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~sh~~~~~~~~ 170 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLIITHYQRLLDYI 170 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 33333332333467888776554 44458999999999999999999888886 666667667899999999999876
Q ss_pred Ccccc
Q 003681 630 LPLKI 634 (803)
Q Consensus 630 l~~~~ 634 (803)
.+++.
T Consensus 171 ~~d~i 175 (200)
T cd03217 171 KPDRV 175 (200)
T ss_pred hCCEE
Confidence 45543
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.76 E-value=5.6e-18 Score=176.92 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=100.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~ 534 (803)
+.++++...| +++.++++++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAY----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 3455555433 24678999998 8999999999999999999999986211 0112
Q ss_pred ccccccccc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
+++++.... ...++ ++..++..+........+|.++++... +.+.+.+|+++|||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 334332111 11111 122223222233344567777776554 44558999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcc
Q 003681 590 EICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~l~~ 632 (803)
|||+|+|+.....+. .++..+. +.|.++|++||+.+....++
T Consensus 158 EP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d 200 (236)
T TIGR03864 158 EPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEADD 200 (236)
T ss_pred CCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence 999999999999887 5666665 46899999999998875433
No 71
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.76 E-value=4.1e-18 Score=191.55 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=107.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.... +.-
T Consensus 4 L~~~nls~~y----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 4 IDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred EEEeeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5667776554 35789999999 8999999999999999999999986211 111
Q ss_pred cccccccccc---cchHH-------------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 534 LMVPAESASI---PYFDA-------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~-------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
.+++++.... ...+. .+..++..+........+|.++++...+ .+.+.+|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2344432211 11111 1222233222333445677787765544 44489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~ 639 (803)
++||||||+|||+.....+. .+++.+.+.|.|+|++||+++++ +++++.-.+..
T Consensus 160 iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLAD 214 (402)
T ss_pred EEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999988886 77777776789999999999987 45554433333
No 72
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.76 E-value=4.1e-18 Score=184.84 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=108.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~ 534 (803)
+.+++++..| +++.+++|++| |++++|+||||+|||||||+|+|+.... +.-.
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEE----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 5667776655 35679999999 8999999999999999999999986211 1122
Q ss_pred cccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
++|+.....+ ..+. ++..++..+......+.+|.++++... +.+.+.+|+++|||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3444322111 1111 122233333333445667888877554 44559999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~ 643 (803)
|||+|||+.....+. .+++.+.+ +.|+|++||+++++ +++++...+..+.+.
T Consensus 159 EPt~gLD~~~~~~l~-~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 159 EPTTGLDPNQLVEIR-NVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred CCcccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999888876 66677765 79999999999865 456554444444443
No 73
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.76 E-value=1.8e-18 Score=172.86 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=108.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCcc--------ccc--
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLM--------VPA-- 538 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~--------Vpa-- 538 (803)
|.++++++.| .+++.+++|+|| |+++-|+||+|+|||||||+|.+...... .|.. +|-
T Consensus 2 I~f~~V~k~Y---~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 2 IRFENVSKAY---PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eeehhhhhhc---CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 4567777666 456779999999 89999999999999999999999873322 1111 111
Q ss_pred -ccccccchHHHhhhCCcCCCccCC-------------------------------ccchHHHHHHHHH-HHHhCCCCeE
Q 003681 539 -ESASIPYFDAIMLHMKSYDSPADG-------------------------------KSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 539 -~~a~i~~~d~I~~~i~~~d~l~~~-------------------------------~Stfs~em~~l~~-iLa~a~~psL 585 (803)
..+.+++..+++.+.++.||+... .+.+|.+-+|... +-+.+.+|.+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v 158 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV 158 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe
Confidence 123334444455555666665432 2344555444433 3344899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+|.||||.+|||..+..|+ .+++.+...|.||+++|||.++.+.
T Consensus 159 LlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred EeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHh
Confidence 9999999999999999997 8999999999999999999999764
No 74
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.76 E-value=1.6e-18 Score=172.28 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=91.7
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc-cccc--ccccccchHHHhhhCCcCCCccC-Ccc
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPA--ESASIPYFDAIMLHMKSYDSPAD-GKS 564 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~-~Vpa--~~a~i~~~d~I~~~i~~~d~l~~-~~S 564 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... .|. .+.. ..+++++...++ ..+..+++.. ...
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~ 90 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLP-LGTLREQLIYPWDD 90 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccc-cccHHHHhhccCCC
Confidence 3578999998 8999999999999999999999986432 221 1111 112222221111 2344444433 356
Q ss_pred chHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 565 SFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 565 tfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
.+|.++++... +.+.+.+|+++|||||++|+|+.....+. .+++.+ +.++|++||+.++...++
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiivsh~~~~~~~~d 155 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISVGHRPSLWKFHD 155 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEEeCChhHHhhCC
Confidence 77888776554 44458999999999999999999888776 444443 689999999987755443
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.76 E-value=4.3e-18 Score=175.53 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=96.6
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------cCc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------CGL 534 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------~G~ 534 (803)
++++...| +++.++++++| |++++|+||||||||||+|+|+|+..... .-.
T Consensus 3 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 3 VENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred EeeEEeec----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 45554433 24578999998 89999999999999999999999862110 112
Q ss_pred cccccccccc---chHHH-------------------hhhC-CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeC
Q 003681 535 MVPAESASIP---YFDAI-------------------MLHM-KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 590 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d~I-------------------~~~i-~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDE 590 (803)
++|+....++ ..+++ +..+ +..+........+|.++++... +.+.+.+|+++||||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 3333322111 11111 1111 0111112223456667666544 344489999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 591 P~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
||+|||+.....+. .+++.+.+.|.|+|++||+.+.. .++++
T Consensus 159 Pt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 159 PSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence 99999999988886 66666766789999999999864 44443
No 76
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.76 E-value=4.4e-18 Score=175.16 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=92.3
Q ss_pred eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cCccccccccccc---chHH
Q 003681 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMVPAESASIP---YFDA 548 (803)
Q Consensus 495 ~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G~~Vpa~~a~i~---~~d~ 548 (803)
.++++++| |++++|+||||||||||+|+|+|+..... .-.++|+....++ ..+.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 68999988 89999999999999999999999862210 1123333321111 1111
Q ss_pred ---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 003681 549 ---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGS 606 (803)
Q Consensus 549 ---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~a 606 (803)
++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR-E 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-H
Confidence 111222222222233456667666444 44458999999999999999999988886 6
Q ss_pred HHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 607 IIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 607 lle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
+++.+.+.|.|+|++||+.+... +++
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 66666667899999999997653 444
No 77
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.2e-18 Score=178.28 Aligned_cols=151 Identities=15% Similarity=0.219 Sum_probs=100.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 36677776554 34679999998 8999999999999999999999986211 11
Q ss_pred C-ccccccccccc---chHHHh------------------------------------hhCCcCCCccCCccchHHHHHH
Q 003681 533 G-LMVPAESASIP---YFDAIM------------------------------------LHMKSYDSPADGKSSFQVEMSE 572 (803)
Q Consensus 533 G-~~Vpa~~a~i~---~~d~I~------------------------------------~~i~~~d~l~~~~Stfs~em~~ 572 (803)
+ .++++....++ ..+++. ..++..+........+|.++++
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 1 12343322111 111111 1112222222233456667766
Q ss_pred HHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhh-hCcc
Q 003681 573 IRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 573 l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~-~l~~ 632 (803)
... +.+.+.+|+++||||||+|||+.....+. .++..+++. |+|+|++||+.+.. .+++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELD-ELIAELRNEHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence 544 44458999999999999999999988886 666666654 89999999999876 3444
No 78
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.75 E-value=6.7e-18 Score=186.39 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=106.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|-...+...+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 4567776655211123579999998 8999999999999999999999987211
Q ss_pred hcCccccccccccc---chH---------------------HHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeE
Q 003681 531 ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psL 585 (803)
+.-.++++....++ ..+ .++..++..+......+.+|.++++...+ .+.+.+|++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 01123333322111 111 12223343333344456778888775544 445899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIK 635 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~ 635 (803)
+|+||||++||+.....+. .+++.+.+ .|.|+|++||+++.+ +++++..
T Consensus 162 LLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~ 212 (343)
T TIGR02314 162 LLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVA 212 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999887 67777754 589999999999886 4455443
No 79
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.2e-18 Score=176.42 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=99.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------cCcc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CGLM 535 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------~G~~ 535 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .-.+
T Consensus 3 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEeEEEEE----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 4566665544 24679999998 89999999999999999999999862110 0123
Q ss_pred cccccccc---cchHHH-------------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEE
Q 003681 536 VPAESASI---PYFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLV 586 (803)
Q Consensus 536 Vpa~~a~i---~~~d~I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLL 586 (803)
+++....+ ...+++ +..++..+........+|.++++...+ .+.+.+|+++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 33332111 111111 111222111222334567777765544 4458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
||||||+|+|+.....+. .+++.+.+ .|.|+|++||+.+.. ..+++
T Consensus 159 llDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 159 LLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred EEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999999988886 66666655 489999999999864 34443
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.75 E-value=4.3e-18 Score=175.49 Aligned_cols=138 Identities=19% Similarity=0.190 Sum_probs=93.1
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cCcccccccccc---cchH
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMVPAESASI---PYFD 547 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G~~Vpa~~a~i---~~~d 547 (803)
+.++++++| |++++|+||||||||||+|+|+|+..... ...+++++...+ ...+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 679999998 89999999999999999999999862110 012333322111 1111
Q ss_pred H---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 548 A---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 548 ~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
+ ++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~- 173 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW- 173 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH-
Confidence 1 112222222222334556777766544 44558999999999999999999888886
Q ss_pred HHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 606 SIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 606 alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
.+++.+.+ +.|+|++||+++... .+++
T Consensus 174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 174 DLILEVRK-GRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHHhcCE
Confidence 66666665 589999999998764 4443
No 81
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.75 E-value=4.2e-18 Score=174.87 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=94.1
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------hcCccccccccc-----ccchHH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS-----IPYFDA 548 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------q~G~~Vpa~~a~-----i~~~d~ 548 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... +...+++++... ....++
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 3568999998 8999999999999999999999986211 112244443221 111122
Q ss_pred H-------------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHH
Q 003681 549 I-------------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 549 I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~ 602 (803)
+ +..++..+........+|.++++...+ .+.+.+|+++||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 122222222233345677787775544 44589999999999999999999888
Q ss_pred HHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 603 IAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 603 L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+. .++..+.+.|.++|++||+.++..
T Consensus 171 l~-~~l~~~~~~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 171 IY-ELLRELRREGMTILVVTHDLGLVL 196 (213)
T ss_pred HH-HHHHHHHhcCCEEEEEeCCHHHHH
Confidence 87 566666657899999999998753
No 82
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.75 E-value=4e-18 Score=172.17 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=91.9
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------------cCcccccccc--cc-
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----------------------CGLMVPAESA--SI- 543 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----------------------~G~~Vpa~~a--~i- 543 (803)
++.++++++| |++++|+||||||||||+|+|+|+..... .-.+++++.. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 4568899988 89999999999999999999999862110 0123333321 11
Q ss_pred -cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 544 -PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 544 -~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
...++ ++..++..+......+.+|.++++... +.+.+.+|+++||||||+|+|+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11111 111222222233334567777776554 4455899999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
..+. .+++.+.+.|.++|++||+.++
T Consensus 164 ~~~~-~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQML-AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeecccc
Confidence 8886 6666776678999999999875
No 83
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.75 E-value=4.6e-18 Score=173.35 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=93.3
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c-------------------Ccccccccccc-
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C-------------------GLMVPAESASI- 543 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~-------------------G~~Vpa~~a~i- 543 (803)
++.++++++| |++++|+||||||||||+|+|+|+..... . ..++++....+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4578999998 89999999999999999999999862110 0 11222221111
Q ss_pred --cchH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHH
Q 003681 544 --PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 544 --~~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~ 599 (803)
...+ .++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 0111 1122222222223334556777766544 444589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
...+. .+++.+.+.|.++|++||+.++...+
T Consensus 170 ~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 170 RDEVL-DLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 88886 66667666689999999999876543
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.75 E-value=1e-17 Score=176.07 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=101.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred EEEeceEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5666776544 24579999998 8999999999999999999999986210
Q ss_pred -----hcCccccccccccc---chHHH----------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHh
Q 003681 531 -----ICGLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTA 579 (803)
Q Consensus 531 -----q~G~~Vpa~~a~i~---~~d~I----------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~ 579 (803)
....++|+....++ ..+++ +..++..+......+.+|.++++... +.+.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHH
Confidence 00123333321111 11111 11222222223334567777776554 4455
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+... ++++
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVL-NTIRQLAQEKRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 8999999999999999999888886 667777767899999999998763 4443
No 85
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=8e-18 Score=176.01 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=100.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------h
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------I 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------q 531 (803)
+.+++++..| +++.+++|++| |++++|+||||+|||||+|+|+|+.... +
T Consensus 2 l~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEE----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 3455665443 24578999998 8999999999999999999999986211 0
Q ss_pred cCccccccccccc---chHH----------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 532 CGLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~----------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
.-.++++....++ ..+. ++..++..+........+|.++++... +.+.+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 1123333321111 1111 112222222222334567777776554 4444899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+||||||+|+|+.....+. .+++.+.+.|.++|++||+.++.. ++++
T Consensus 158 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 205 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASR 205 (240)
T ss_pred EEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999988886 667777667899999999998763 3443
No 86
>PRK10908 cell division protein FtsE; Provisional
Probab=99.75 E-value=8.7e-18 Score=173.76 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAY---LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEe---cCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 3455665443 124578999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeE
Q 003681 531 ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psL 585 (803)
+.-.+++++...++ ..++ ++..++..+......+.+|.++++...+ .+.+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 01123343322111 1111 1222222222233345677777775544 444899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+||||||+|+|+.....+. .+++.+.+.+.++|++||+.++..
T Consensus 159 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 159 LLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred EEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999999999999888886 566666666899999999998764
No 87
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.5e-18 Score=180.85 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=106.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..| .+++.+++|+|| |++++|+||||||||||+|+|+|+..... .
T Consensus 4 ~l~~~~l~~~~---~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRY---KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEe---CCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence 35667776544 224579999998 89999999999999999999999862110 1
Q ss_pred Ccccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 533 GLMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
-.++++... .+ ...+++ +..++..+........+|.++++... +.+.+.+|+++
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 123333320 00 111111 11222222223334567777776554 44458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~ 641 (803)
||||||+|||+.....+. .+++.+.+.|.|+|++||+++.+ +++++.-.+..+.
T Consensus 161 llDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~ 215 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215 (274)
T ss_pred EEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999886 66667766689999999999876 4565544443433
No 88
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.7e-18 Score=185.22 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=106.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|-...+++.+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 4566666554211124679999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeE
Q 003681 531 ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psL 585 (803)
+.-.+++++...++ ..++ ++..++..+......+.+|.++++...+ .+.+.+|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 11123444322111 1111 1222333333334456678888776554 445899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccccccccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAY 639 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~-l~~~~~~v~~ 639 (803)
+||||||+|||+.....+. .+++.+. +.|.|+|++||+++... ++++.-.+..
T Consensus 162 LlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~ 216 (343)
T PRK11153 162 LLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA 216 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999988886 6666664 45899999999998754 4544333333
No 89
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.75 E-value=6.4e-18 Score=187.30 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=107.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc-------------Cc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC-------------GL 534 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~-------------G~ 534 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.... .. ..
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36777887665 34678999988 8999999999999999999999987221 01 12
Q ss_pred ccccccccccc---hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
+++++.+.++. .++ +...++..+........+|.++++... +.+.+.+|+++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33333322221 111 122222222223334556777766544 44458999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||+++||+.....+...+.+...+.|.|+|++||+.+++ .++++...+..+.+
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999987444444455699999999999875 55655444444444
No 90
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.6e-18 Score=175.11 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=116.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh------------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------ 528 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~------------------------ 528 (803)
.+.++|++..| ++++.+++||+| |++++|+||+|||||||||+|.|+.-
T Consensus 3 ~i~~~nl~k~y---p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 3 MIEVKNLSKTY---PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred eEEEeeeeeec---CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36778887766 478899999999 89999999999999999999999761
Q ss_pred hhhcCcccccccccc-----------------cchHH---------------HhhhCCcCCCccCCccchHHHHHHHHHH
Q 003681 529 LGICGLMVPAESASI-----------------PYFDA---------------IMLHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 529 laq~G~~Vpa~~a~i-----------------~~~d~---------------I~~~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
..++|+ +.+....+ +.+.. .+.+++..+......+++|.+.++...|
T Consensus 80 r~~iGm-IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 80 RRDIGM-IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHhcee-EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 122332 22211111 11111 2234455444455566777776665544
Q ss_pred HH-hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEEE
Q 003681 577 VT-ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 645 (803)
Q Consensus 577 La-~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m~~~ 645 (803)
.+ .+.+|+++|.|||+++|||.....++..+.+...+.|.|+|++-|+.+++. ++++...+..+.+.++
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 43 489999999999999999999999985555555678999999999999984 5555555555555443
No 91
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=5.7e-18 Score=175.87 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=97.1
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------hcCc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGL 534 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q~G~ 534 (803)
+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 3 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 3 VSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred EEeEEEEe----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 44554433 24578999998 8999999999999999999999986211 1122
Q ss_pred ccccccccccc---hHHHh------------------hhCC-cCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCC
Q 003681 535 MVPAESASIPY---FDAIM------------------LHMK-SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 591 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~I~------------------~~i~-~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP 591 (803)
++|++...++. .+.+. ..++ ..+........+|.++++... +.+.+.+|+++|||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 44444322211 11111 0011 011112223456667666544 3445899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 592 CRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 592 ~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
|+|+|+.....+. .++..+.+ .|.|+|++||+.+... ++++
T Consensus 159 t~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 201 (230)
T TIGR03410 159 TEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADR 201 (230)
T ss_pred cccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence 9999999988886 66666655 4899999999998765 3443
No 92
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=7.8e-18 Score=172.18 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=99.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c--------------Cc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--------------GL 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~--------------G~ 534 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... . -.
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACER----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEE----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 3455555443 24578999998 89999999999999999999999862111 0 11
Q ss_pred ccccccccc---cchHH------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCC
Q 003681 535 MVPAESASI---PYFDA------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 592 (803)
Q Consensus 535 ~Vpa~~a~i---~~~d~------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~ 592 (803)
++++..... ...++ +...++..+......+.+|.++++... +.+.+.+|+++|+||||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222221111 11111 122223222223334567777776554 44458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+|+|+.....+. .+++.+.+.|.|+|++||+.++...
T Consensus 158 ~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 158 TAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred ccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhcc
Confidence 999999998886 6666666678999999999988754
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=175.01 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=100.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------hc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q~ 532 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... +.
T Consensus 4 l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 4 LTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred EEEeCcEEEe----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5566776544 24679999999 8999999999999999999999986211 01
Q ss_pred Ccccccccccc---cchHHHh----------------------hhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 533 GLMVPAESASI---PYFDAIM----------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~I~----------------------~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
-.++++....+ ...+++. ..++..+........+|.++++... +.+.+.+|+++
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12333332111 1112211 1111111112223456777766544 44558999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
||||||+|+|+.....+. .+++.+.+.|.++|++||+.+.. ..+++
T Consensus 160 llDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~ 206 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCER 206 (241)
T ss_pred EEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCE
Confidence 999999999999888885 67777777789999999998644 44443
No 94
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.8e-18 Score=170.89 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=88.6
Q ss_pred eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc-ccccc-------------cccccchHHHhhhCCcC
Q 003681 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAE-------------SASIPYFDAIMLHMKSY 556 (803)
Q Consensus 495 ~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~-~Vpa~-------------~a~i~~~d~I~~~i~~~ 556 (803)
.++++++| |++++|+||||+|||||+|+|+|+.... .|. .+... .+++++...+|. .+..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 68899888 8999999999999999999999986432 121 11100 011222222222 2333
Q ss_pred CCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 557 DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 557 d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
|++ +|.++++...+ .+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.+....
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~ 160 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEEecCHHHHHh
Confidence 333 67777765544 4458999999999999999999988886 66666654 6899999999988754
No 95
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8.4e-18 Score=179.99 Aligned_cols=153 Identities=13% Similarity=0.149 Sum_probs=101.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C---------------- 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~---------------- 532 (803)
+.+++++..| .+++.+++|++| |++++|+||||+|||||||+|+|+..... .
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSY---PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEc---CCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3455665443 224569999998 89999999999999999999999862110 0
Q ss_pred Ccccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEE
Q 003681 533 GLMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLL 586 (803)
..++++... .+ ...+++ ...++..+........+|.++++...+ .+.+.+|+++
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 112333211 00 111111 111222222223345677787775554 4458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
||||||+|+|+.....+. .+++.+.+.|.|+|++||+.+....+++.
T Consensus 159 lLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~~tH~~~~~~~~d~v 205 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVL-ERIKKLHEKGKTIVYITHNLEELHDADRI 205 (274)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHhhCCEE
Confidence 999999999999888886 66777766799999999999987654433
No 96
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.74 E-value=3.2e-18 Score=171.39 Aligned_cols=130 Identities=17% Similarity=0.087 Sum_probs=90.7
Q ss_pred eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc------ccc-------cccccccchHHHhhhCCcCC
Q 003681 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVP-------AESASIPYFDAIMLHMKSYD 557 (803)
Q Consensus 495 ~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~------~Vp-------a~~a~i~~~d~I~~~i~~~d 557 (803)
.++++++| |++++|+||||+|||||+|+|+|+.... .|. .+. ...+++++...++ ..+..+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLF-DTTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeee-cccHHH
Confidence 68999988 8999999999999999999999986321 121 110 0011222222222 123344
Q ss_pred CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 558 SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 558 ~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
++ ...++.++++... +.+.+.+|+++||||||+|+|+.....+. .+++.+. ++.|+|++||+.++...+
T Consensus 94 ~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~~~~ 163 (178)
T cd03247 94 NL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWITHHLTGIEHM 163 (178)
T ss_pred hh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhC
Confidence 43 4566777766544 44458999999999999999999888886 5666665 489999999999887643
No 97
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.9e-18 Score=179.66 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=100.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------h
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------I 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------q 531 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+.... +
T Consensus 2 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRY----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEc----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 4456665544 24578999998 8999999999999999999999986211 0
Q ss_pred cCccccccccc-cc---chHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 532 CGLMVPAESAS-IP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a~-i~---~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
...++|++... +. ..+++ +..++..+........+|.++++... +.+.+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 11233433210 00 11111 11112211122234567778777554 4445899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+||||||+|||+.....+. .+++.+.+.|.++|++||+.+.. .++++.
T Consensus 158 llLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i 206 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAV 206 (271)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999988886 66666766689999999999876 345443
No 98
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.74 E-value=2.7e-18 Score=174.65 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=101.3
Q ss_pred EEEeccCcccccc--CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH--hhhhc-----Ccccc-----cc
Q 003681 478 LKMNGLSPYWFDA--AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGIC-----GLMVP-----AE 539 (803)
Q Consensus 478 i~l~~l~~~~~~~--~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~--~laq~-----G~~Vp-----a~ 539 (803)
+.+++++..|-.. ..++.++++++| |++++|+||||+|||||+|+|+|+. ..... |..+. ..
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhhe
Confidence 5666776554210 013679999998 8999999999999999999999986 32211 11110 00
Q ss_pred cccccchHHHhhhCCcCCCccCCc--cchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003681 540 SASIPYFDAIMLHMKSYDSPADGK--SSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 616 (803)
Q Consensus 540 ~a~i~~~d~I~~~i~~~d~l~~~~--Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~ 616 (803)
.+++++...++..++..+++.... ..+|.++++... +.+.+.+|+++|||||++|+|+.....+. .+++.+.+.|.
T Consensus 84 i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 162 (194)
T cd03213 84 IGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGR 162 (194)
T ss_pred EEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCC
Confidence 122222222333334444432211 157777776544 44558999999999999999999988886 66667766799
Q ss_pred EEEEEccChh--hhhCccc
Q 003681 617 LGIVSTHLHG--IFSLPLK 633 (803)
Q Consensus 617 tvIivTH~~e--l~~l~~~ 633 (803)
|+|++||+.+ +...+++
T Consensus 163 tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 163 TIICSIHQPSSEIFELFDK 181 (194)
T ss_pred EEEEEecCchHHHHHhcCE
Confidence 9999999985 3344443
No 99
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.74 E-value=1.6e-17 Score=173.63 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=97.1
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH-hhh---------------------hc-
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLG---------------------IC- 532 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~-~la---------------------q~- 532 (803)
+++++..| +++.++++++| |++++|+||||||||||+|+|+|+. ... ..
T Consensus 3 ~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 3 IKDLHVSV----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred EeeEEEEE----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 44554443 24678999998 8999999999999999999999983 100 11
Q ss_pred Ccccccccccccc---hH----------------------------HHhhhCCcCCC-ccCCcc-chHHHHHHHHH-HHH
Q 003681 533 GLMVPAESASIPY---FD----------------------------AIMLHMKSYDS-PADGKS-SFQVEMSEIRS-IVT 578 (803)
Q Consensus 533 G~~Vpa~~a~i~~---~d----------------------------~I~~~i~~~d~-l~~~~S-tfs~em~~l~~-iLa 578 (803)
-.+++++...++. .+ .++..++..+. ...... .+|.++++... +.+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 1233333221110 00 01111222211 122233 47888777554 445
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.+.+|+++||||||+|+|+.....+. .+++.+.+.|.|+|++||+.++...
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHh
Confidence 58999999999999999999988886 6667777678999999999988754
No 100
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=186.38 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=105.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c-------------Ccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C-------------GLM 535 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~-------------G~~ 535 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... . -.+
T Consensus 4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 6677776655 24678999998 89999999999999999999999862210 1 123
Q ss_pred ccccccccc---chHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeC
Q 003681 536 VPAESASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDE 590 (803)
++++...++ ..+++ +..++..+........+|.++++... +.+.+.+|+++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444332221 11111 22223322233344567778777554 444589999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccccccccc
Q 003681 591 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 591 P~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
||+|||+.....+. .+++.+. +.|.|+|++||+.+++ .++++...+..+
T Consensus 160 Pts~LD~~~~~~l~-~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 160 PLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999998887 5555554 4589999999999765 445544333333
No 101
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.3e-18 Score=177.85 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=100.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----------ccccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----------LMVPA 538 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----------~~Vpa 538 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+..... .| .++++
T Consensus 2 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADY----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEe----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 3456665444 23578999998 89999999999999999999999862210 11 23333
Q ss_pred cccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCC
Q 003681 539 ESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 593 (803)
Q Consensus 539 ~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~s 593 (803)
....++ ..++ ++..++..+........+|.++++... +.+.+.+|+++||||||+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 321111 1111 122222222223334567777776554 444589999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Cccc
Q 003681 594 GTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~-l~~~ 633 (803)
|||+.....+. .+++.+ .+.|+++|++||+.+... ++++
T Consensus 158 ~LD~~~~~~l~-~~L~~~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 158 ALDAFTREQMQ-TLLLKLWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999988886 566666 456899999999998753 4443
No 102
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.74 E-value=1e-17 Score=173.28 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=97.1
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------cCcccccccccc---cchHHH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----------------CGLMVPAESASI---PYFDAI 549 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----------------~G~~Vpa~~a~i---~~~d~I 549 (803)
++.++++++| |++++|+||||+|||||+++|+|+..... ...++|+....+ ...+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 4578999988 89999999999999999999999862111 111333332211 111221
Q ss_pred -----------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003681 550 -----------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 550 -----------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L 611 (803)
+..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH-HHHHHH
Confidence 12222222222333456767666544 44558999999999999999999988886 666667
Q ss_pred HhcCCEEEEEccChhhh-hCccccccccc
Q 003681 612 DNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 612 ~~~g~tvIivTH~~el~-~l~~~~~~v~~ 639 (803)
.+.|.++|++||+.++. ..+++...+..
T Consensus 171 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 171 PEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 66789999999999876 45554433333
No 103
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.4e-18 Score=186.20 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=104.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------cc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------LM 535 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------~~ 535 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||||+|+|+..... .| .+
T Consensus 4 l~i~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEeEEEEe---CCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5667776554 134679999998 89999999999999999999999873211 11 12
Q ss_pred cccccccccc---hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeC
Q 003681 536 VPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~~---~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDE 590 (803)
+++....++. .++ ++..++..+........+|.++++... +.+.+.+|+++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3333222211 111 111222222222333456677766544 444489999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccccccccccee
Q 003681 591 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 591 P~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
|+++||+.....+. ..++.+. +.|.|+|++||+.+.+ .++++...+..+.+
T Consensus 161 P~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 161 PLSNLDAKLRVQMR-LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999987 4455554 4599999999998755 45554444444433
No 104
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=4.2e-18 Score=171.30 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccc---------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA---------E 539 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa---------~ 539 (803)
+.++++...+ ++++++| |++++|+||||+|||||+|+|+|+..... .|..+.. .
T Consensus 5 l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 5 LEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 5666665432 7888888 89999999999999999999999863221 1111110 0
Q ss_pred cccccch---HHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003681 540 SASIPYF---DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 540 ~a~i~~~---d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g 615 (803)
.+++++. ..++..++..+++.... .+|.++++... +.+.+.+|+++|||||++|+|+.....+. .+++.+.+.|
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~ 154 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADAG 154 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 1111211 11333344444443221 16777776554 44558999999999999999999988886 6666666668
Q ss_pred CEEEEEccChhhh
Q 003681 616 CLGIVSTHLHGIF 628 (803)
Q Consensus 616 ~tvIivTH~~el~ 628 (803)
.++|++||+.+..
T Consensus 155 ~tiii~sh~~~~~ 167 (182)
T cd03215 155 KAVLLISSELDEL 167 (182)
T ss_pred CEEEEEeCCHHHH
Confidence 9999999998654
No 105
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.74 E-value=1.1e-17 Score=170.85 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=95.5
Q ss_pred EeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cCccc
Q 003681 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMV 536 (803)
Q Consensus 480 l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G~~V 536 (803)
+++++..| +++.++++++| |++++|+|+||+|||||+|+|+|+..... ...++
T Consensus 3 i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 3 ADELTCER----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred EEEEEEEe----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 45554443 34678999988 89999999999999999999999862110 01123
Q ss_pred ccccccc---cchHH---------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 537 PAESASI---PYFDA---------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 537 pa~~a~i---~~~d~---------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
+++.... ...++ ++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 3221111 11111 222233322223334567777776554 4445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
.....+. .++..+.+.|.++|++||+...
T Consensus 159 ~~~~~l~-~~l~~~~~~g~tiii~sH~~~~ 187 (201)
T cd03231 159 AGVARFA-EAMAGHCARGGMVVLTTHQDLG 187 (201)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEEecCchh
Confidence 9988886 6666666678999999998654
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.74 E-value=1.9e-17 Score=173.33 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=99.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------C 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------~ 532 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||||+|+|+..... .
T Consensus 3 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4566666544 24579999998 89999999999999999999999862110 0
Q ss_pred Cccccccccccc---chHH-----------------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHh
Q 003681 533 GLMVPAESASIP---YFDA-----------------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTA 579 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~-----------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~ 579 (803)
-.++++....++ ..++ ++..++..+........+|.++++... +.+.
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 112333221111 1111 112222222223334556777766544 4445
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.++.. ++++
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAG-KHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhc-CCEEEEEECCHHHHHHhCCE
Confidence 8999999999999999999988886 66666655 689999999998764 4443
No 107
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.4e-17 Score=169.83 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=99.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cCc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGL 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G~ 534 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .-.
T Consensus 2 l~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDY----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEe----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE
Confidence 3456665443 24579999998 89999999999999999999999862110 011
Q ss_pred ccccccccc---cchHH----------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCC
Q 003681 535 MVPAESASI---PYFDA----------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 535 ~Vpa~~a~i---~~~d~----------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sG 594 (803)
++++..... ...+. ++..++..+........++.++++... +.+.+.+|+++|+||||+|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 233221111 11111 122222222222333456766665443 4455899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+|+.....+. .+++.+.+.|.++|++||+.+....++
T Consensus 158 LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 158 LDELSLLTII-TKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred cCHHHHHHHH-HHHHHHHHcCCEEEEEeCCchhccccc
Confidence 9999988886 566666667899999999998876543
No 108
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.2e-17 Score=171.27 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=99.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----------------cCccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------CGLMV 536 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----------------~G~~V 536 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+++|+|+..... ...++
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVR----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEeEEEEE----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 4566665544 24578999998 89999999999999999999999862110 01223
Q ss_pred ccccccc---cchHHH-----------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCC
Q 003681 537 PAESASI---PYFDAI-----------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 537 pa~~a~i---~~~d~I-----------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGL 595 (803)
+...... ...+++ +..++..+........+|.++++... +.+.+.+|+++||||||+|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 3221111 111111 11222222222334567777776554 44458999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 596 D~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
|+.....+. .+++.+.+.|.++|++||+.++...
T Consensus 159 D~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 159 DAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc
Confidence 999988886 6666666679999999999987654
No 109
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.74 E-value=1.6e-17 Score=172.13 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=96.2
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH-----hhhh-----cC-----------------cccccccc
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----LLGI-----CG-----------------LMVPAESA 541 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~-----~laq-----~G-----------------~~Vpa~~a 541 (803)
++.++++++| |++++|+||||||||||+|+|+|+. .... .| .++++...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4578999998 8999999999999999999999986 3210 01 12333221
Q ss_pred cc--cchHH----------------------HhhhCCcCCCccCC--ccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCC
Q 003681 542 SI--PYFDA----------------------IMLHMKSYDSPADG--KSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 542 ~i--~~~d~----------------------I~~~i~~~d~l~~~--~Stfs~em~~l~~i-La~a~~psLLLLDEP~sG 594 (803)
.+ ...++ ++..++..+..... ...+|.++++...+ .+.+.+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11 11111 11222222222222 26678887775554 445899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
||+.....+. .+++.+.+. .++|++||+.+... ++++...+..+
T Consensus 172 LD~~~~~~l~-~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 172 LDPISTAKIE-ELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred CCHHHHHHHH-HHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 9999888886 666666665 89999999998753 45443333333
No 110
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=9.8e-18 Score=168.75 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=95.7
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH-hhhhcCccccc----ccccccchHHHhhhCCcCC-CccCC
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPA----ESASIPYFDAIMLHMKSYD-SPADG 562 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~-~laq~G~~Vpa----~~a~i~~~d~I~~~i~~~d-~l~~~ 562 (803)
.+.+++++|| |++++|+||||||||||||++.+-. .....+. .+. ...++++ ......++..+ .....
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~-~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~~~ 84 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISF-LPKFSRNKLIFIDQ-LQFLIDVGLGYLTLGQK 84 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCc-ccccccccEEEEhH-HHHHHHcCCCccccCCC
Confidence 4578899888 8999999999999999999985310 0000111 111 0122233 23455666543 35556
Q ss_pred ccchHHHHHHHHHHH-HhCCC--CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 563 KSSFQVEMSEIRSIV-TATTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 563 ~Stfs~em~~l~~iL-a~a~~--psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
...++.++++...+. +.+.+ |+++|+|||++|+|+.....+. .+++.+.+.|.++|++||+.++...++
T Consensus 85 ~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIivSH~~~~~~~~d 156 (176)
T cd03238 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIEHNLDVLSSAD 156 (176)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 678888887755544 44788 9999999999999999988887 566666667999999999998865443
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.9e-17 Score=173.48 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=101.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC---------------- 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~---------------- 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 3 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEeeEEEE----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4556665544 24579999998 8999999999999999999999986211 00
Q ss_pred -----Ccccccccccc---cchHHH----------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCC
Q 003681 533 -----GLMVPAESASI---PYFDAI----------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATT 581 (803)
Q Consensus 533 -----G~~Vpa~~a~i---~~~d~I----------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~ 581 (803)
-.++|+....+ ...+++ +..++...........+|.++++... +.+.+.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12333332111 111111 11122222222333456777776554 444589
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+|+++||||||+|+|+.....+. .+++.+.+.|.|+|++||+.+.. +++++.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIV-SIIRELAETGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 99999999999999999888886 67777776789999999999876 344443
No 112
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=185.41 Aligned_cols=161 Identities=13% Similarity=0.140 Sum_probs=107.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------L 534 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------~ 534 (803)
.+.++++++.| +++.++++++| |++++|+||||||||||||+|+|+..... .| .
T Consensus 6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46778887665 34678999998 89999999999999999999999873211 11 1
Q ss_pred ccccccccccc---hHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIPY---FDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
+++++.+.++. .+++ ...++..+........+|.++++... +.+.+.+|+++|||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 23333322221 1111 11122222222233456666666443 34448999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 590 EICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||++|||+.....+. ..++.+ .+.|.|+|++||+.+++ .++++...+..+.+
T Consensus 162 EP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 162 EPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999987 555555 45589999999999875 56665544444444
No 113
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.74 E-value=9.3e-18 Score=186.56 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=106.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--c-----C------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--C-----G------------ 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--~-----G------------ 533 (803)
.+.++++++.| +++.++++++| |++++|+||||||||||||+|+|+..... . |
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 47778887766 24579999998 89999999999999999999999864332 1 1
Q ss_pred -cccccccccccc---hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEE
Q 003681 534 -LMVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVL 587 (803)
Q Consensus 534 -~~Vpa~~a~i~~---~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLL 587 (803)
.+++++...++. .++ ++..++..+........+|.++++... +.+.+.+|+++|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 122222221111 111 112222222223334456677766544 344489999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhc--CCEEEEEccChhhh-hCccccccccccee
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~~--g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||||++|||+..+..+. ..++.+.+. |.|+|++||+.+++ .++++...+..+.+
T Consensus 161 LDEP~s~LD~~~r~~l~-~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i 217 (362)
T TIGR03258 161 LDEPLSALDANIRANMR-EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL 217 (362)
T ss_pred EcCccccCCHHHHHHHH-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999987 555666554 79999999999875 45554444444433
No 114
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.74 E-value=2.1e-17 Score=171.58 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=101.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 36777887554 34679999999 8999999999999999999999986211 11
Q ss_pred Ccccccccccc--cchH-------------------HHhhhCCcCC-CccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 533 GLMVPAESASI--PYFD-------------------AIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 533 G~~Vpa~~a~i--~~~d-------------------~I~~~i~~~d-~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
..++++....+ ...+ .++..++..+ ........+|.++++... +.+.+.+|+++|||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 12334332111 1111 1222233221 122334566777766444 44458999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCc
Q 003681 590 EICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~l~ 631 (803)
|||+|+|+.....+. .+++.+. +.|.++|++||+.++...+
T Consensus 163 EPt~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sh~~~~~~~~ 204 (225)
T PRK10247 163 EITSALDESNKHNVN-EIIHRYVREQNIAVLWVTHDKDEINHA 204 (225)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECChHHHHhC
Confidence 999999999888886 5555554 4589999999999887543
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=178.92 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=102.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..|- ...+.++++++| |++++|+||||+|||||+|+|+|+..... ..
T Consensus 6 l~~~~l~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 6 IRVEHISFRYP--DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred EEEEEEEEEeC--CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 56777765541 123569999998 89999999999999999999999862211 11
Q ss_pred cccccccc-cc---cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCeEEE
Q 003681 534 LMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~psLLL 587 (803)
.++++... .+ ...++ ++..++..+........+|.++++...+. +.+.+|+|+|
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23333221 00 11111 11222332233334456777877755544 4489999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcc
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~ 632 (803)
|||||+|||+.....+. .+++.+.+. |.|+|++||+++....++
T Consensus 164 LDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d 208 (279)
T PRK13635 164 LDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQAD 208 (279)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCC
Confidence 99999999999988886 666676654 899999999999876444
No 116
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=178.60 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=106.9
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
+.+++++..|.... .++.+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 45566655442111 12479999998 8999999999999999999999986211
Q ss_pred hcCccccccc--ccc--cchH---------------------HHhhhCCcC--CCccCCccchHHHHHHHHHH-HHhCCC
Q 003681 531 ICGLMVPAES--ASI--PYFD---------------------AIMLHMKSY--DSPADGKSSFQVEMSEIRSI-VTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~--a~i--~~~d---------------------~I~~~i~~~--d~l~~~~Stfs~em~~l~~i-La~a~~ 582 (803)
....++|+.. ..+ ...+ .++..++.. +........+|.++++...+ .+.+.+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~ 162 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME 162 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence 1112444432 111 1111 122233432 22334456788888876554 444899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++++ .++++...+..+
T Consensus 163 P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 163 PKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999988886 66777755 489999999999876 455544333333
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.73 E-value=1.6e-17 Score=176.12 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=99.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ...
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 3 LEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4566666544 24679999998 8999999999999999999999986211 011
Q ss_pred cccccccccc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHHHHHh-C------CC
Q 003681 534 LMVPAESASI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-T------TS 582 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-a------~~ 582 (803)
.++++..... ...+.+ +..++..+........+|.++++...+... + .+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 2334332211 111211 111222222223344667777775554443 5 48
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Ccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~-l~~ 632 (803)
|+++||||||+|||+.....+. .+++.+. +.|.++|++||+++... +++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence 9999999999999999988887 5556665 67899999999998764 444
No 118
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.73 E-value=1.7e-17 Score=175.50 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=101.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... +.-
T Consensus 2 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSA----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEE----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe
Confidence 3456665444 34679999998 8999999999999999999999986211 111
Q ss_pred cccccccccc---cchHHH-------------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 534 LMVPAESASI---PYFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
.++|++.... ...+++ +..++..+........+|.++++... +.+.+.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2444432111 111221 11112222222233456677766544 444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
++||||||+|+|+.....+. .+++.+.+.|.|+|++||+++.. +++++
T Consensus 158 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETL-ALVRELAATGVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred EEEEcCccccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999888886 66777776789999999999876 44543
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.6e-17 Score=175.55 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=99.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +.-
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 3 LRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEeEEEEE----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4566666544 24679999998 8999999999999999999999986211 111
Q ss_pred cccccccccc---cchHHHh-------------------------hhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 534 LMVPAESASI---PYFDAIM-------------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I~-------------------------~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
.++|++.... ...+.+. ..++..+........+|.++++... +.+.+.+|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2344432211 1111111 1111111122233456777766444 445589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~ 632 (803)
++||||||+|+|+.....+. .+++.+.+.|.|+|++||+.+.. +.++
T Consensus 159 llllDEP~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcC
Confidence 99999999999999888886 66666766689999999999875 3443
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.3e-17 Score=175.52 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=102.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +.
T Consensus 11 ~l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46777876554 24679999999 8999999999999999999999986211 01
Q ss_pred Cccccccccccc---chHHH-------------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP---YFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
..++++....++ ..+++ +..++..+.+......+|.++++... +.+.+.+|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 166 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 123444322111 11221 11122211122233456777776554 44558999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
+++||||||+|+|+.....+. .++..+.+ .|.++|++||+.++. ..+++
T Consensus 167 ~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred CEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999999999988886 66666654 489999999999875 34443
No 121
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.73 E-value=2e-17 Score=183.35 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=105.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------cCcc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CGLM 535 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------~G~~ 535 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .-.+
T Consensus 3 L~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEe----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 5667776655 24579999998 89999999999999999999999862210 1123
Q ss_pred cccccccccc---hHHH-------------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 536 VPAESASIPY---FDAI-------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 536 Vpa~~a~i~~---~d~I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
++++...++. .+++ +..++..+........+|.++++... +.+.+.+|+++
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333222211 1111 11222222222333456777776554 34448999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
|||||++|||+.....+. .+++.+.+ .|.|+|++||+.+.+ .++++...+..+.+
T Consensus 159 LLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 159 LLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred EEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999887 55555654 589999999999875 45554444444433
No 122
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.9e-18 Score=179.21 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=111.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cc------ccccc---
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GL------MVPAE--- 539 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~------~Vpa~--- 539 (803)
+.+.+.++.| +...+++||++ |++++++|||||||||+||+|+|+...... |- .++..
T Consensus 3 i~i~~~~~~~----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 3 IRINNVKKRF----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred eeehhhhhhc----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 3455555554 34566778887 899999999999999999999999843221 11 11221
Q ss_pred cccccchHHHhhhCCcCCCccCCcc---------------------------------chHHHHHHHH-HHHHhCCCCeE
Q 003681 540 SASIPYFDAIMLHMKSYDSPADGKS---------------------------------SFQVEMSEIR-SIVTATTSRSL 585 (803)
Q Consensus 540 ~a~i~~~d~I~~~i~~~d~l~~~~S---------------------------------tfs~em~~l~-~iLa~a~~psL 585 (803)
.+++.+...+|.+|++.||+..++. .+|.+.++.. .+.+.+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 2455666779999999999887752 1122322221 23333899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccccccccceeE
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~ 643 (803)
+|||||+++||..-+..+- .-++.+. +.|.|++|+|||.+++ +++++.-.+.++...
T Consensus 159 LLLDEPf~ALDa~vr~~lr-~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 159 LLLDEPFGALDAKVRKELR-RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred EeecCCchhhhHHHHHHHH-HHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 9999999999999998885 5555554 5599999999999876 455555444555443
No 123
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.73 E-value=1.5e-17 Score=176.05 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=102.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCccccccccccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASIP 544 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a~i~ 544 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .-.++|++....+
T Consensus 5 l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 5 VSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEeceEEEE----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 5666776544 24579999998 89999999999999999999999863211 1124444322111
Q ss_pred c-----h--------------HHHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 003681 545 Y-----F--------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 545 ~-----~--------------d~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~ 604 (803)
. . ..++..++..+........+|.++++...+ .+.+.+|+++||||||+|||+.....+.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1 0 111223333333334456678787765544 4458999999999999999999988886
Q ss_pred HHHHHHHHhc-CCEEEEEccChhhh-hCcc
Q 003681 605 GSIIETLDNI-GCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 605 ~alle~L~~~-g~tvIivTH~~el~-~l~~ 632 (803)
.++..+.+. |.|+|++||+.++. ..++
T Consensus 161 -~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 161 -DLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred -HHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 555666544 89999999999875 3443
No 124
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-17 Score=174.13 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=97.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------C 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------~ 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .
T Consensus 6 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 6 LSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5667776544 24679999998 89999999999999999999999862110 1
Q ss_pred Cccccccccccc---chHHHhh-------------------hC-CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEE
Q 003681 533 GLMVPAESASIP---YFDAIML-------------------HM-KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLI 588 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~I~~-------------------~i-~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLL 588 (803)
-.++++....++ ..+++.. .+ +..+........+|.++++... +.+.+.+|+++||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 123333321111 1111110 01 0111111223345556655443 3444899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCccc
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLK 633 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el-~~l~~~ 633 (803)
||||+|+|+.....+. .+++.+.+.|.|+|++||+.+. .+.+++
T Consensus 162 DEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 162 DEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred cCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 9999999999888886 6667777779999999999875 344443
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=172.88 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=100.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... ...
T Consensus 4 l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 4 IEFKEVSYSS----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 5666766443 24578999998 8999999999999999999999986211 011
Q ss_pred ccccccccccc--ch-----------------HHHhhhCCcC-CCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCC
Q 003681 534 LMVPAESASIP--YF-----------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 592 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~-----------------d~I~~~i~~~-d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~ 592 (803)
.+++++...++ .. ..++..++.. +........+|.++++... +.+.+.+|+++||||||
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 23333321111 00 1122222332 1122334566777766554 44458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 593 RGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
+|+|+.....+. .+++.+.+ .|.|+|++||+.+... ++++.
T Consensus 160 ~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i 202 (241)
T PRK14250 160 SALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYT 202 (241)
T ss_pred ccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEE
Confidence 999998888876 66666655 5899999999998753 45443
No 126
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.73 E-value=1.5e-17 Score=169.18 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=91.0
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCcccccccccc---cch
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASI---PYF 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~~Vpa~~a~i---~~~ 546 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... ....++++..... ...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 4678999998 8999999999999999999999986211 0112333322111 111
Q ss_pred HH-----------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 003681 547 DA-----------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 547 d~-----------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~all 608 (803)
++ ++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA-GLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHH
Confidence 11 112222222223334567777766554 44458999999999999999999888876 666
Q ss_pred HHHHhcCCEEEEEccChhh
Q 003681 609 ETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 609 e~L~~~g~tvIivTH~~el 627 (803)
..+.+.|.|+|++||+...
T Consensus 171 ~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 171 RAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred HHHHhCCCEEEEEEccccc
Confidence 6666678999999998743
No 127
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.5e-17 Score=172.63 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=94.1
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcCccccccccccc---ch
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP---YF 546 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G~~Vpa~~a~i~---~~ 546 (803)
+.++++++| |++++|+||||+|||||||+|+|+.... ....++|+....++ ..
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 568999988 8999999999999999999999986211 01123344322111 11
Q ss_pred HH---------------------HhhhCCcCC--CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 003681 547 DA---------------------IMLHMKSYD--SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 547 d~---------------------I~~~i~~~d--~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~ 602 (803)
++ ++..++... ........+|.++++... +.+.+.+|+++||||||+|+|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 11 122223321 223334567777777554 444589999999999999999998888
Q ss_pred HHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 603 IAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 603 L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
+. .+++.+.+ .|.++|++||+.+.. .++++
T Consensus 174 l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 174 LQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred HH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 86 66666654 489999999999864 34443
No 128
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.73 E-value=2.3e-17 Score=176.05 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=100.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+....
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 7 LVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred eEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 36777776544 34679999998 8999999999999999999999986211
Q ss_pred -hcCccccccccccc---chHHH----------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCC
Q 003681 531 -ICGLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSR 583 (803)
Q Consensus 531 -q~G~~Vpa~~a~i~---~~d~I----------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~p 583 (803)
+...++++....++ ..+++ +..++..+......+.+|.++++...+ .+.+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 01123343322111 11221 111222222223345677787775554 4458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~ 629 (803)
+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+...
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Confidence 999999999999999988886 56666654 4899999999987653
No 129
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=2.3e-17 Score=170.07 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----------------cCcc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------CGLM 535 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----------------~G~~ 535 (803)
.+.+++++..+ +++.++++++| |++++|+||||||||||+|+|+|+..... ...+
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred eEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 36777876554 24579999998 89999999999999999999999862110 0123
Q ss_pred cccccccc---cchHHH------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCC
Q 003681 536 VPAESASI---PYFDAI------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 593 (803)
Q Consensus 536 Vpa~~a~i---~~~d~I------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~s 593 (803)
+++..... ...+++ ...++..+........+|.++++... +.+.+.+|+++|||||++
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 33322111 111111 11222222223334466777766544 444589999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
|+|+.....+. .+++.+.+.|.++|++||+.+...
T Consensus 167 ~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 167 NLDLEGITLVN-RMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred cCCHHHHHHHH-HHHHHHHhCCCEEEEEecChhhhh
Confidence 99999888775 677777677899999999998753
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.6e-17 Score=170.36 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=92.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCccccccccccc---ch
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP---YF 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~~Vpa~~a~i~---~~ 546 (803)
++.++++++| | +++|+||||||||||+|+|+|+.... ....+++++...++ ..
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 3578999998 7 99999999999999999999986211 11123444332111 11
Q ss_pred HHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 003681 547 DAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 547 d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~ 604 (803)
+.+ +..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 111 11122222222233456777766544 44558999999999999999999888886
Q ss_pred HHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 605 GSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 605 ~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
.+++.+.+ +.|+|++||+.++.. ++++
T Consensus 171 -~~l~~~~~-~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 171 -NLLSELGE-DRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred -HHHHHHhC-CCEEEEEcCCHHHHHHhCCE
Confidence 67777765 589999999998764 4443
No 131
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.73 E-value=2.1e-17 Score=172.97 Aligned_cols=141 Identities=12% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cCcccc-cccccc---c
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMVP-AESASI---P 544 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G~~Vp-a~~a~i---~ 544 (803)
+++.++++++| |++++|+||||||||||+|+|+|+..... ...+++ +..... .
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 45679999998 89999999999999999999999862110 111233 211111 1
Q ss_pred chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 003681 545 YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 545 ~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~ 602 (803)
..+. ++..++..+........+|.++++... +.+.+.+|+++||||||+|||+.....
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 1111 111122222222334556777776554 445589999999999999999999888
Q ss_pred HHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 603 IAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 603 L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
+. .++..+.+ .+.++|++||+.++. .++++
T Consensus 192 l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 192 IR-NFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred HH-HHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 87 56666644 589999999999875 44443
No 132
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.73 E-value=2.5e-17 Score=170.30 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=98.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..+-...+.+.++++++| |++++|+||||+|||||+++|+|+....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 4455555443111112679999998 8999999999999999999999986211
Q ss_pred hcCccccccccccc---chH----------------------HHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 531 ICGLMVPAESASIP---YFD----------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d----------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
....++++....++ ..+ .++..++..+........++.++++...+ .+.+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01122333221111 111 11112222222223334566777665543 34489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~ 632 (803)
++|||||++|+|+.....+. .+++.+.+ .+.++|++||+++..++++
T Consensus 162 illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d 209 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTILIVTHDNRILDVAD 209 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 99999999999999988886 66666654 5899999999998765544
No 133
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=2.2e-17 Score=184.39 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=106.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------L 534 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------~ 534 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .| .
T Consensus 14 ~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 14 LVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred eEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47778887665 34678999988 89999999999999999999999873211 11 1
Q ss_pred ccccccccccc---hHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIPY---FDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
+++++.+.++. .+++ +..++..+........+|.++++... +.+.+.+|+++|||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD 169 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 23333222211 1111 11122222222233456666666444 34448999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 590 EICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||++|||+..+..+. ..++.+ .+.|.|+|++||+.+++ .++++...+..+.+
T Consensus 170 EP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 170 ESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999887 555555 45699999999999875 45665544444444
No 134
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.8e-17 Score=174.88 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=102.2
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------h
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------I 531 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q 531 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.... .
T Consensus 6 ~~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 357778887655 24679999999 8999999999999999999999986211 0
Q ss_pred cCcccccccccc---cchHHH-------------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 532 CGLMVPAESASI---PYFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i---~~~d~I-------------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
.-.++|++...+ ...+.+ +..++..+........+|.++++... +.+.+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 112334332111 111111 11112222222334556777766544 4445899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
|+++||||||+|+|+.....+. .++..+.+ .|.++|++||+.++. +++++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d~ 213 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYASH 213 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999999998887 56666654 589999999999854 44443
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=2.6e-17 Score=174.63 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=99.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--cC------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--CG------------------ 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--~G------------------ 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .|
T Consensus 5 l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 5 IRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5667776554 34679999998 89999999999999999999999874210 11
Q ss_pred --------ccccccccccc---chHHHh-----------------------------hhCCcCCCccCCccchHHHHHHH
Q 003681 534 --------LMVPAESASIP---YFDAIM-----------------------------LHMKSYDSPADGKSSFQVEMSEI 573 (803)
Q Consensus 534 --------~~Vpa~~a~i~---~~d~I~-----------------------------~~i~~~d~l~~~~Stfs~em~~l 573 (803)
.++|+....++ ..+++. ..++..+........+|.++++.
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence 22333321111 111111 11121111222334566666665
Q ss_pred HH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 574 RS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 574 ~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
.. +.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.++. ..+++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 44 34458999999999999999999988886 66666654 589999999999864 44543
No 136
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=1.8e-18 Score=173.96 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=111.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCc---ccc----cc-
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGL---MVP----AE- 539 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~---~Vp----a~- 539 (803)
.+...++.+.| +++.|.+++|| |+++++.||||+||||.+.||.|++.... .+. ..| +.
T Consensus 4 ~L~a~~l~K~y----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 4 TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred EEEehhhhHhh----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35667888777 57899999999 89999999999999999999999872211 010 011 11
Q ss_pred -cccccchHHHhhhCCcCCCccCCc---------------------------------cchHHHHHHHHH-HHHhCCCCe
Q 003681 540 -SASIPYFDAIMLHMKSYDSPADGK---------------------------------SSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 540 -~a~i~~~d~I~~~i~~~d~l~~~~---------------------------------Stfs~em~~l~~-iLa~a~~ps 584 (803)
.+++||-..||..++++||+..-+ .++|.+-++... +.+.+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 144555556666666665543211 122333333222 334489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCccccccccccee
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYKAM 642 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el-~~l~~~~~~v~~~~m 642 (803)
++||||||+|.||..-..| +.++.+|+++|.-|+++-|+... ....++.--+..+++
T Consensus 160 fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred EEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeE
Confidence 9999999999999999998 59999999999999999999754 345544433333333
No 137
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.5e-17 Score=176.76 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=102.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..|-. .+...+++|+|| |++++|+||||||||||+|+|+|+..... ..
T Consensus 5 l~~~~l~~~~~~-~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 5 IEVKNLTFKYKE-DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEEEeEEEEcCC-CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 566777655411 112468999998 89999999999999999999999862111 11
Q ss_pred cccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEE
Q 003681 534 LMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLL 587 (803)
.++++... .+ ...+++ +..++..+........+|.++++... +.+.+.+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23333221 11 111111 11222222223334567777766544 444589999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccc
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~~ 634 (803)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+.+....+++.
T Consensus 164 LDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri 210 (279)
T PRK13650 164 LDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRV 210 (279)
T ss_pred EECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 99999999999888886 66666655 589999999999887654433
No 138
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.2e-17 Score=176.17 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------------cCcccccccccc
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------------CGLMVPAESASI 543 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------------~G~~Vpa~~a~i 543 (803)
+++.++++++| |++++|+||||||||||+|+|+|+..... ...++|+....+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 35678999998 89999999999999999999999862110 112333332111
Q ss_pred c---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHH
Q 003681 544 P---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 544 ~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~ 598 (803)
+ ..++ ++..++..+........+|.++++... +.+.+.+|+++||||||+|||+.
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 1 1111 112222222233334567778777554 44458999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccc
Q 003681 599 KGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 599 ~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~ 633 (803)
....+. .++..+. +.|.++|++||+.+.. .++++
T Consensus 195 ~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 195 IRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 988886 6666664 4589999999999865 34443
No 139
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.7e-17 Score=176.53 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=104.1
Q ss_pred eEEEeccCccccccC--CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------
Q 003681 477 CLKMNGLSPYWFDAA--EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~--~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------- 530 (803)
.+.+++++..|-... +++.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 356777766552111 13579999998 8999999999999999999999986211
Q ss_pred -hcCcccccccc--ccc--chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCC
Q 003681 531 -ICGLMVPAESA--SIP--YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSR 583 (803)
Q Consensus 531 -q~G~~Vpa~~a--~i~--~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~p 583 (803)
+...++|++.. .+. ..+. ++..++..+........+|.++++...+ .+.+.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 01123333221 000 0111 1122233232333446777888775554 4458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~ 632 (803)
+++|||||++|||+.....+. .++..+.+ .|.|+|++||+++....++
T Consensus 164 ~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d 212 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEAD 212 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCC
Confidence 999999999999999999986 66777754 5899999999999875443
No 140
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.73 E-value=3.3e-17 Score=169.49 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=98.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------- 531 (803)
+.+++++..|.....+..++++++| |++++|+|||||||||||++|+|+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 3456665444110001378999998 89999999999999999999999862110
Q ss_pred -cCcccccccc--c---ccchHHH-----------------------hhhCCcC-CCccCCccchHHHHHHHHHH-HHhC
Q 003681 532 -CGLMVPAESA--S---IPYFDAI-----------------------MLHMKSY-DSPADGKSSFQVEMSEIRSI-VTAT 580 (803)
Q Consensus 532 -~G~~Vpa~~a--~---i~~~d~I-----------------------~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a 580 (803)
.-.+++++.. . ....+++ +..++.. .........+|.++++...+ .+.+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 1122333321 0 1111111 1112221 11222334567777765543 4458
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
.+|+++||||||+|||+.....+. .++..+.+ .|.|+|++||+.+... ++++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 999999999999999999888886 55555654 4899999999998765 4443
No 141
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.73 E-value=2.6e-17 Score=173.54 Aligned_cols=151 Identities=15% Similarity=0.196 Sum_probs=97.5
Q ss_pred EEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc-----------------
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC----------------- 532 (803)
Q Consensus 479 ~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~----------------- 532 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 2 RFSDVTKRF----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred EEEEEEEEe----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 345554443 23578999998 8999999999999999999999986211 01
Q ss_pred -----------Cccccccccccc---chHHH----------------------hhhCCcCCCccCCccchHHHHHHHHH-
Q 003681 533 -----------GLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSEIRS- 575 (803)
Q Consensus 533 -----------G~~Vpa~~a~i~---~~d~I----------------------~~~i~~~d~l~~~~Stfs~em~~l~~- 575 (803)
..++++....++ ..+++ +..++..+........+|.++++...
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHH
Confidence 112333221111 11111 11222222222233456677666544
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+++.. .++++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 217 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRV 217 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 44458999999999999999999888886 55666554 589999999999876 445433
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3e-17 Score=175.30 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=101.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..|- .+++.++++++| |++++|+||||||||||+|+|+|+..... .
T Consensus 7 ~l~~~nl~~~~~--~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 7 MIKVENVSFSYP--NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred EEEEEeEEEEcC--CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 466777765541 134579999998 89999999999999999999999862210 0
Q ss_pred Ccccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 533 GLMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
..+++++.. .+ ...+++ +..++..+........+|.++++... +.+.+.+|+++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 123333321 11 111111 11122222222334567777776554 44458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l~~ 632 (803)
||||||+|||+.....+. .+++.+.+. +.++|++||+.+....++
T Consensus 165 lLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d 210 (271)
T PRK13632 165 IFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAILAD 210 (271)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHhhCC
Confidence 999999999999888886 666666554 589999999998765443
No 143
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=8.2e-18 Score=174.24 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=106.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCcc---ccc-cc----
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLM---VPA-ES---- 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~---Vpa-~~---- 540 (803)
+.++++++.| ++-.++||||| |++++|+||||+||||++++|.|+..... .|-. .|. +.
T Consensus 5 L~v~~l~k~F----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 5 LEVRGLSKRF----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeccceeec----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4567787766 67889999999 89999999999999999999999873321 1111 111 11
Q ss_pred -ccccchHHHhhhCCcCCCccCCc-------------------------------------------cchHHHHHHH-HH
Q 003681 541 -ASIPYFDAIMLHMKSYDSPADGK-------------------------------------------SSFQVEMSEI-RS 575 (803)
Q Consensus 541 -a~i~~~d~I~~~i~~~d~l~~~~-------------------------------------------Stfs~em~~l-~~ 575 (803)
++-+|..++|..+++.||+..+. ..++.+.++. .-
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 22344456666666666653321 1222233332 22
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+++|+|+|||||.+|+++.+...++ .+++.+.+ .|.|++++.|++++. .++++
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccE
Confidence 44558999999999999999999999997 77777766 579999999999986 34443
No 144
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.72 E-value=2.6e-17 Score=171.08 Aligned_cols=150 Identities=18% Similarity=0.090 Sum_probs=98.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccc---cccccc---
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV---PAESAS--- 542 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~V---pa~~a~--- 542 (803)
+.+.+++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .|..+ ......
T Consensus 23 l~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEV----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE 98 (224)
T ss_pred hhhhhhhhhc----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC
Confidence 3445554433 45789999998 89999999999999999999999863211 11000 000000
Q ss_pred ccchH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 543 IPYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 543 i~~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
....+ .++..++..+........+|.++++... +.+.+.+|+++||||||+|||+...
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11111 1122223333333445667777776554 4445899999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
..+. .+++.+.+.|.++|++||+.++.. +++
T Consensus 179 ~~~~-~~l~~~~~~~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 179 EKCQ-RRLRELLKQGKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred HHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 8887 555666556899999999998754 344
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4e-17 Score=174.10 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=101.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..|- ...+.+++|++| |++++|+||||||||||+|+|+|+..... .
T Consensus 7 ~l~i~~l~~~~~--~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQ--SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcC--CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 366777765541 112468999998 89999999999999999999999862110 1
Q ss_pred Ccccccccc-ccc---chH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 533 GLMVPAESA-SIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i~---~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
..++++... .++ ..+ .+...++..+........+|.++++... +.+.+.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 123333321 110 011 1112223222233344567777776554 44458999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~ 631 (803)
||||||+|+|+.....+. .++..+.+ .|.|+|++||+.+....+
T Consensus 165 lLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~ 209 (269)
T PRK13648 165 ILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEA 209 (269)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcC
Confidence 999999999999988887 55566654 489999999999876543
No 146
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.7e-17 Score=175.21 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=104.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+..... ..
T Consensus 4 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 4 IETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred EEEEEEEEEe---CCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5566776544 223468999998 89999999999999999999999862110 01
Q ss_pred cccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEE
Q 003681 534 LMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLL 587 (803)
.++++... .+ ...+++ ...++..+........+|.++++... +.+.+.+|+++|
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23333321 01 111111 11222222233334567777776554 445589999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
|||||+|+|+.....+. .+++.+.+ .|.|+|++||++++. +.+++...+..+
T Consensus 161 lDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 161 LDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999988886 66666655 489999999999876 455544333333
No 147
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.2e-17 Score=183.23 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=106.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------L 534 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------~ 534 (803)
.+.+++++..| ++..++++++| |++++|+||||||||||||+|+|+..... .| .
T Consensus 19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47788887765 34578999988 89999999999999999999999973211 11 1
Q ss_pred ccccccccccc---hHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 535 MVPAESASIPY---FDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
+++++.+.++. .+++ ...++..+........+|.++++... +.+.+.+|+++|||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD 174 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33333322221 1111 11112211112223455666666443 44448999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||++|||+.....+...+.+.+.+.|.|+|++||+.+++ .++++...+..+.+
T Consensus 175 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999887555555566799999999999875 55655444444333
No 148
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.72 E-value=4.2e-17 Score=172.58 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=103.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--------------- 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~--------------- 532 (803)
.+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+..... .
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 5 KLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred cEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46778887654 24679999998 89999999999999999999999862110 0
Q ss_pred -------------Ccccccccccc---cchHHH----------------------hhhCCcCCCc-cCCccchHHHHHHH
Q 003681 533 -------------GLMVPAESASI---PYFDAI----------------------MLHMKSYDSP-ADGKSSFQVEMSEI 573 (803)
Q Consensus 533 -------------G~~Vpa~~a~i---~~~d~I----------------------~~~i~~~d~l-~~~~Stfs~em~~l 573 (803)
-.++|+....+ ...+++ +..++..+.. ......+|.++++.
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 12233322111 111221 1222222211 23345677777765
Q ss_pred HH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 574 RS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 574 ~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
.. +.+.+.+|+++||||||+|||+.....+. .+++.+.+.|+++|++||+.++.. ++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 54 44448999999999999999999988886 677777767999999999998765 34433
No 149
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.8e-17 Score=175.57 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=101.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------hcCcc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLM 535 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------q~G~~ 535 (803)
.+.+++++..| .+++.+++|++| |++++|+||||||||||+|+|+|+.... ....+
T Consensus 6 ~l~~~~l~~~~---~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTW---RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEe---cCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 46777776554 234679999998 8999999999999999999999986211 01123
Q ss_pred ccccccc---c--cchH-------------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 536 VPAESAS---I--PYFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 536 Vpa~~a~---i--~~~d-------------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
+|++... . ...+ .++..++..+........+|.++++... +.+.+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4433210 0 0000 1112222222223334567777776554 444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~ 628 (803)
++||||||+|||+.....+. .+++.+.+.|.++|++||+.+..
T Consensus 163 llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~ 205 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSV 205 (272)
T ss_pred EEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999999988886 66677766789999999999765
No 150
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.4e-17 Score=170.98 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=96.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||||+|+|+..... .-
T Consensus 3 l~~~~l~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 3 IEFENVNFSY---DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred EEEEEEEEec---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5666776544 223468999998 89999999999999999999999862110 01
Q ss_pred ccccccccccc--chHHHhh---------------hCCc-----------CCCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 534 LMVPAESASIP--YFDAIML---------------HMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I~~---------------~i~~-----------~d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
.++++....++ ..+++.. .++. ..........+|.++++... +.+.+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 22333221110 0011100 0000 00011112456777766554 344489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
++|||||++|||+.....+. .++..+. .+.++|++||+.++...+
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~~~~ 204 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLM-KGRTSIIIAHRLSTIKNA 204 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhc-CCCEEEEEecCHHHHhhC
Confidence 99999999999999988886 5666665 489999999999886543
No 151
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.72 E-value=3.7e-17 Score=170.57 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=92.2
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcCcccccccccc--cch
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASI--PYF 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G~~Vpa~~a~i--~~~ 546 (803)
++.++++++| |++++|+||||||||||+|+|+|+.... ....++|+....+ ...
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 3578999988 8999999999999999999999986211 0112334332111 011
Q ss_pred HHHhh---------------hCCc-----------CCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHH
Q 003681 547 DAIML---------------HMKS-----------YDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 547 d~I~~---------------~i~~-----------~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~ 599 (803)
+++.. ..+. ..........+|.++++...+ .+.+.+|+++||||||+|+|+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 11110 0000 001112335677777775544 44589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
...+. .+++.+.+ |.++|++||+.++...++
T Consensus 174 ~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~d 204 (237)
T cd03252 174 EHAIM-RNMHDICA-GRTVIIIAHRLSTVKNAD 204 (237)
T ss_pred HHHHH-HHHHHhcC-CCEEEEEeCCHHHHHhCC
Confidence 88887 55666654 899999999998875443
No 152
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.72 E-value=3.6e-17 Score=189.47 Aligned_cols=158 Identities=21% Similarity=0.241 Sum_probs=109.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC---------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G--------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .|
T Consensus 12 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 12 LCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred EEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 6777887655 34679999999 89999999999999999999999862110 11
Q ss_pred -ccccccccccc---chH-----------------HHhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCeEEEEeCC
Q 003681 534 -LMVPAESASIP---YFD-----------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEI 591 (803)
Q Consensus 534 -~~Vpa~~a~i~---~~d-----------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~psLLLLDEP 591 (803)
.+++++...++ ..+ .++..++..+........+|.++++...+. +.+.+|+++|||||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 13343321111 111 122333333334445567888888766544 45899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003681 592 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 592 ~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
|+|||+.....+. .+++.+.+.|.++|++||+.+.. .++++...+..+
T Consensus 168 t~~LD~~~~~~l~-~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 168 TASLTPAETERLF-SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred CCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999988886 66777777799999999999875 345444333333
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.3e-17 Score=167.98 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=88.2
Q ss_pred ccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c-------------Cccccccccccc---chHHHh---
Q 003681 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C-------------GLMVPAESASIP---YFDAIM--- 550 (803)
Q Consensus 499 dVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~-------------G~~Vpa~~a~i~---~~d~I~--- 550 (803)
+++| |++++|+||||||||||+|+|+|+..... . ..+++++...++ ..+++.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 6666 89999999999999999999999862211 0 123333322111 112221
Q ss_pred ------------------hhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003681 551 ------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 551 ------------------~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L 611 (803)
..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 1111111112223456777776554 44458999999999999999999999887 555666
Q ss_pred H-hcCCEEEEEccChhhh-hCccc
Q 003681 612 D-NIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 612 ~-~~g~tvIivTH~~el~-~l~~~ 633 (803)
. +.|.++|++||+.++. .++++
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCE
Confidence 4 4589999999999876 34443
No 154
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.72 E-value=2.5e-17 Score=169.81 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=98.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G 533 (803)
+.+++++..|- ..++.++++++| |++++|+||||||||||+++|+|+.... ...
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcC--CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56667665441 112568999998 8999999999999999999999986211 011
Q ss_pred ccccccccccc--chHHH---------------hhhCCcCCCccC-----------CccchHHHHHHHHHH-HHhCCCCe
Q 003681 534 LMVPAESASIP--YFDAI---------------MLHMKSYDSPAD-----------GKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I---------------~~~i~~~d~l~~-----------~~Stfs~em~~l~~i-La~a~~ps 584 (803)
.+++++...++ ..+.+ +..++..+.+.. ....+|.++++...+ .+.+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 23444332111 11111 111111110110 124677777765544 44589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
++||||||+|||+.....+. .+++.+.+. .++|++||++++.++++
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~tii~~sH~~~~~~~~d 206 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGD-KTLIIITHRPSLLDLVD 206 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCC-CEEEEEeCCHHHHHhCC
Confidence 99999999999999988886 566666554 89999999998765544
No 155
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.9e-17 Score=175.97 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=103.4
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------- 531 (803)
+.+++++..|-... .++.+++|++| |++++|+||||+|||||||+|+|+.....
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 45566665542100 12468999998 89999999999999999999999862110
Q ss_pred ---cCccccccc--cc--ccchHHH---------------------hhhCCcC-CCccCCccchHHHHHHHHHH-HHhCC
Q 003681 532 ---CGLMVPAES--AS--IPYFDAI---------------------MLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATT 581 (803)
Q Consensus 532 ---~G~~Vpa~~--a~--i~~~d~I---------------------~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~ 581 (803)
...++++.. .. ....+++ +..++.. +........+|.++++...+ .+.+.
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~ 162 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY 162 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 112333331 01 1111111 1222332 12234456778888776554 44489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+++.+ .++++.
T Consensus 163 ~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 163 EPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999888886 67777777799999999999875 344433
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.72 E-value=4e-17 Score=188.64 Aligned_cols=160 Identities=13% Similarity=0.185 Sum_probs=108.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcC---------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG--------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G--------------- 533 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+.... ..|
T Consensus 5 i~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 5 LQLKGIDKAF----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred EEEeeeEEEe----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5677776654 34679999998 8999999999999999999999986221 011
Q ss_pred -cccccccccc---cchH-------------------------HHhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCC
Q 003681 534 -LMVPAESASI---PYFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSR 583 (803)
Q Consensus 534 -~~Vpa~~a~i---~~~d-------------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~p 583 (803)
.+++++...+ ...+ .++..++..+.......++|.++++...+. +.+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 1333321111 0111 112223333333334567788888765544 458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m 642 (803)
+++||||||+|||+.....+. .+++.+.+.|.++|++||+.++.. ++++.-.+..+.+
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999988886 677777777899999999988764 4554433434333
No 157
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.4e-17 Score=170.06 Aligned_cols=138 Identities=18% Similarity=0.140 Sum_probs=93.2
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC--cccccccccc--cchHHHhh---------
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--LMVPAESASI--PYFDAIML--------- 551 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G--~~Vpa~~a~i--~~~d~I~~--------- 551 (803)
+.++++++| |++++|+||||+|||||+|+|+|+..... .| .++++....+ ...+++..
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 369999998 89999999999999999999999863211 11 3444432111 11111110
Q ss_pred -----hCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003681 552 -----HMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 614 (803)
Q Consensus 552 -----~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~ 614 (803)
.++..+ ........++.++++... +.+.+.+|+++|+|||++|+|+.....+...+++.+.+.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 111100 111223567777776554 344489999999999999999998888875566666556
Q ss_pred CCEEEEEccChhhhhCc
Q 003681 615 GCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 615 g~tvIivTH~~el~~l~ 631 (803)
|.|+|++||+.+....+
T Consensus 178 ~~tvi~~sh~~~~~~~~ 194 (204)
T cd03250 178 NKTRILVTHQLQLLPHA 194 (204)
T ss_pred CCEEEEEeCCHHHHhhC
Confidence 89999999999877643
No 158
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.1e-17 Score=175.95 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c---------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--------------- 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~--------------- 532 (803)
+.+++++..|.... .++.+++|++| |++++|+||||||||||+|+|+|+..... .
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 45566655442111 12368999998 89999999999999999999999862210 1
Q ss_pred ----Cccccccc--ccc--cchHH---------------------HhhhCCcCC-CccCCccchHHHHHHHHHH-HHhCC
Q 003681 533 ----GLMVPAES--ASI--PYFDA---------------------IMLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATT 581 (803)
Q Consensus 533 ----G~~Vpa~~--a~i--~~~d~---------------------I~~~i~~~d-~l~~~~Stfs~em~~l~~i-La~a~ 581 (803)
..++++.. ..+ ...++ ++..++..+ ........+|.++++...+ .+.+.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 12333321 111 11111 112223221 1223345667777765543 34489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
+|+++||||||+|||+.....+. .+++.+++.|.|+|++||+++++ .++++...+..+.+
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999888886 67777776799999999999876 45655444444433
No 159
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.9e-17 Score=174.07 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=101.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------- 531 (803)
+.+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+.....
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSY---PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEe---CCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3455665444 223568999998 89999999999999999999999862110
Q ss_pred cCcccccccc--cc--cchHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 532 CGLMVPAESA--SI--PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a--~i--~~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
...++|+... .+ ...++ ++..++..+........+|.++++... +.+.+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0123333311 00 11111 111222222222334567777776554 4445899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
+||||||+|+|+.....+. .++..+.+.|.|+|++||+.+... ++++.
T Consensus 159 lllDEPt~gLD~~~~~~l~-~~l~~l~~~~~til~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIM-KLLYDLNKEGITIIISTHDVDLVPVYADKV 207 (275)
T ss_pred EEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 9999999999999999887 666666666899999999998764 45443
No 160
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=1.8e-17 Score=170.50 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=113.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCccc---cc------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMV---PA------ 538 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~~V---pa------ 538 (803)
.+.+++++-.| ++..++.++|| |+++.|+||||+|||||||+|+|++... ..|..+ |.
T Consensus 3 mL~v~~l~~~Y----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeecc----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 35677887666 45789999999 8999999999999999999999988322 122222 11
Q ss_pred ccccccchHHHhhhCCcCCCccCCc-------------------------------cchHHHHHHHHHH-HHhCCCCeEE
Q 003681 539 ESASIPYFDAIMLHMKSYDSPADGK-------------------------------SSFQVEMSEIRSI-VTATTSRSLV 586 (803)
Q Consensus 539 ~~a~i~~~d~I~~~i~~~d~l~~~~-------------------------------Stfs~em~~l~~i-La~a~~psLL 586 (803)
..+++|+-.++|.++++.+|+..+. .++|.+-+|+..| .+.+.+|+|+
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 1245666677777777777765331 2344555554433 3448999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccce
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
|||||+.||.|.-...|. .+++.+++ .|.||+++.++...+- ++++...+.++.
T Consensus 159 LLDEPs~GLaP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gr 214 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGR 214 (237)
T ss_pred EecCCccCcCHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCE
Confidence 999999999999999997 66777764 4789999999988763 444433333333
No 161
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.71 E-value=2.7e-17 Score=182.80 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=102.0
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh------------------------hhcCcccccccccc
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 543 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l------------------------aq~G~~Vpa~~a~i 543 (803)
+++.+++|+|| |++++|+||||||||||||+|+|+... .+...++++....+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35678899998 899999999999999999999998721 11223444443322
Q ss_pred cc---hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHH
Q 003681 544 PY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 544 ~~---~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~ 598 (803)
+. .++ ++..++..+........+|.++++... +.+.+.+|+++||||||++||+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 21 111 122233333333445567888877554 44458999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccccccccce
Q 003681 599 KGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 599 ~g~~L~~alle~L-~~~g~tvIivTH~~el~-~l~~~~~~v~~~~ 641 (803)
.+..+. .++..+ .+.|.|+||+||+++++ .++++...+..+.
T Consensus 164 ~r~~l~-~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~ 207 (363)
T TIGR01186 164 IRDSMQ-DELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGE 207 (363)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999997 444455 45589999999999875 5555544444443
No 162
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.3e-17 Score=174.59 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=105.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------h
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------I 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------q 531 (803)
+.+++++..| .+++.++++++| |++++|+||||+|||||+|+|+|+.... .
T Consensus 6 l~~~~l~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 6 LKVEELNYNY---SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred EEEEeEEEEe---CCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5677776554 234679999998 8999999999999999999999986211 0
Q ss_pred cCcccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeE
Q 003681 532 CGLMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psL 585 (803)
...++|++.. .+ ...+++ +..++..+........+|.++++...+ .+.+.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1123344321 00 111111 122222222233345677777775544 444899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
+||||||+|+|+.....+. .+++.+.+ .|.|+|++||+++... ++++.-.+..+
T Consensus 163 LilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred EEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999988886 66666654 4899999999998864 55544333333
No 163
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.6e-17 Score=171.29 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=91.2
Q ss_pred eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cCcccccccccc--cchHH
Q 003681 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPAESASI--PYFDA 548 (803)
Q Consensus 495 ~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G~~Vpa~~a~i--~~~d~ 548 (803)
.++++++| |++++|+||||||||||+|+|+|+..... ...+++++...+ ...++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 68899888 89999999999999999999999872211 112333332111 11111
Q ss_pred Hhh------------------------hC--CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHH
Q 003681 549 IML------------------------HM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 549 I~~------------------------~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~ 601 (803)
+.. .+ +...........+|.++++... +.+.+.+|+++||||||+|||+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 100 00 0000111223456677666544 44458999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 602 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 602 ~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
.+. .+++.+.+ +.++|++||+.++...+++.
T Consensus 176 ~l~-~~l~~~~~-~~tii~~sh~~~~~~~~d~v 206 (234)
T cd03251 176 LVQ-AALERLMK-NRTTFVIAHRLSTIENADRI 206 (234)
T ss_pred HHH-HHHHHhcC-CCEEEEEecCHHHHhhCCEE
Confidence 886 66666654 88999999999887654433
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.71 E-value=4e-17 Score=170.82 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=97.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------hcCccccccccccc---chH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YFD 547 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------q~G~~Vpa~~a~i~---~~d 547 (803)
++.++++++| |++++|+||||+|||||+|+|+|+.... ....++|+....++ ..+
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 4579999988 8999999999999999999999986211 01123333321111 111
Q ss_pred ---------------------HHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 548 ---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 548 ---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
.++..++..+........+|.++++...+ .+.+.+|+++|||||++|+|+.....+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~- 170 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR- 170 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 11222222222223335677777765544 4448999999999999999999888886
Q ss_pred HHHHHHHhc-CCEEEEEccChhhh-hCccccccccccee
Q 003681 606 SIIETLDNI-GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 606 alle~L~~~-g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
.+++.+.+. ++|+|++||+.+.. +.+++...+..+.+
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 566666554 89999999999864 44554433344433
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.3e-17 Score=188.56 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=107.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-hcC-------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-ICG------------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-q~G------------------- 533 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 6 l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 6 LEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred EEEeeeEEEe----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 6777777655 34679999999 8999999999999999999999986420 111
Q ss_pred ---cccccccccc---cchHH------------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCC
Q 003681 534 ---LMVPAESASI---PYFDA------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTS 582 (803)
Q Consensus 534 ---~~Vpa~~a~i---~~~d~------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~ 582 (803)
.+++++...+ ...+. ++..++..+.......++|.++++...+ .+.+.+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 1223221110 11111 1222233222333456778888776554 445899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
|+++||||||+|||+.....+. .++..+.+.|.++|++||+.+.+. ++++.-.+..+.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~ 220 (506)
T PRK13549 162 ARLLILDEPTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220 (506)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCE
Confidence 9999999999999999988886 666677777899999999988764 455443333333
No 166
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.9e-17 Score=188.23 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=107.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------hc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q~ 532 (803)
+.+++++..| +++.+++|+|| |++++|+||||||||||||+|+|+.... ..
T Consensus 6 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 6 ISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred EEEeeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 6677777655 34679999998 8999999999999999999999986211 01
Q ss_pred Ccccccccccc---cchHH----------------------------HhhhCCcCCCccCCccchHHHHHHHHHHH-HhC
Q 003681 533 GLMVPAESASI---PYFDA----------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIV-TAT 580 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~----------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a 580 (803)
-.+++++...+ ...+. ++..++..+......+++|.++++...+. +.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 12333332111 11111 12222333333344567788888765544 458
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+.+++. ++++...+..+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999988886 677777777999999999988764 44443333333
No 167
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=3.7e-17 Score=168.66 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=97.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..|- .+++.++++++| |++++|+||||||||||+|+|+|+..... .-
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYR--PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecC--CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56667765441 123579999998 89999999999999999999999862111 11
Q ss_pred ccccccccccc--chHHH--------------hhhCCcCCCc-----------cCCccchHHHHHHHHHH-HHhCCCCeE
Q 003681 534 LMVPAESASIP--YFDAI--------------MLHMKSYDSP-----------ADGKSSFQVEMSEIRSI-VTATTSRSL 585 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I--------------~~~i~~~d~l-----------~~~~Stfs~em~~l~~i-La~a~~psL 585 (803)
.++++....++ ..+++ +..++..+.+ ......+|.++++...+ .+.+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 23333322111 01111 1111111111 12345667777665544 444899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
+|||||++|||+.....+. .+++.+.+ +.++|++||+.++...+
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~ 204 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFK-DCTVLTIAHRLDTIIDS 204 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcC-CCEEEEEeCCHHHHhhC
Confidence 9999999999999888886 66666654 68999999999887644
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.71 E-value=7.2e-17 Score=171.72 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=94.0
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------hcCcccccccc--c-
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------ICGLMVPAESA--S- 542 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------------------q~G~~Vpa~~a--~- 542 (803)
++.+++|++| |++++|+||||||||||||+|+|+.... +...++++... .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4679999999 8999999999999999999999986210 11223444321 1
Q ss_pred --ccchHH----------------------HhhhCCcC-CCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCC
Q 003681 543 --IPYFDA----------------------IMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 543 --i~~~d~----------------------I~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD 596 (803)
....+. ++..++.. .........+|.++++...+ .+.+.+|+++||||||+|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 011111 12222322 11223345667777765544 44589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccc
Q 003681 597 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~ 632 (803)
+.....+. .+++.+.+ .|.|+|++||+.+... +++
T Consensus 183 ~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 183 MVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred HHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhc
Confidence 99888886 55556554 5899999999998764 344
No 169
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.71 E-value=6e-17 Score=169.10 Aligned_cols=137 Identities=13% Similarity=0.083 Sum_probs=90.4
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcCccccccccccc--chH
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--YFD 547 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G~~Vpa~~a~i~--~~d 547 (803)
+.++++++| |++++|+||||||||||+++|+|+.... ....++++....++ ..+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 568899888 8999999999999999999999986211 01122333221110 011
Q ss_pred HHhh---------------hCCc-----------CCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 548 AIML---------------HMKS-----------YDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 548 ~I~~---------------~i~~-----------~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g 600 (803)
.+.. ..+. ..........+|.++++...+ .+.+.+|+++||||||+|||+...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1100 0000 001111234567777665543 444899999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
..+. .+++.+. .|.++|++||+.++...++
T Consensus 176 ~~l~-~~l~~~~-~g~~vi~~sh~~~~~~~~d 205 (238)
T cd03249 176 KLVQ-EALDRAM-KGRTTIVIAHRLSTIRNAD 205 (238)
T ss_pred HHHH-HHHHHhc-CCCEEEEEeCCHHHHhhCC
Confidence 8886 6666666 6899999999998876544
No 170
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.71 E-value=6.1e-17 Score=167.76 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=100.3
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------- 531 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------- 531 (803)
..+.+++++..|-. .++..++++++| |++++|+||||+|||||+++|+|+.....
T Consensus 10 ~~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 10 GIVKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred ceEEEEEEEEEeCC-CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 45777888765521 112468999998 89999999999999999999999862111
Q ss_pred cCcccccccccc--cchHHH------------------------hhhC--CcCCCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 532 CGLMVPAESASI--PYFDAI------------------------MLHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i--~~~d~I------------------------~~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
.-.+++++...+ ...+++ +..+ +...........+|.++++... +.+.+.+
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 012233322110 000111 1111 1222223334567777776554 4445899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
|+++||||||+|+|+.....+. .++..+.+ +.|+|++||++++...+
T Consensus 169 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~ 215 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQ-QALYDWPE-RRTVLVIAHRLSTVERA 215 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHcC-CCEEEEEECCHHHHHhC
Confidence 9999999999999999988886 55555655 68999999999887543
No 171
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.1e-17 Score=172.08 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=99.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Ccccc---------cc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVP---------AE 539 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vp---------a~ 539 (803)
+.+++++..| .++..+++++++ |+.++|+||||||||||+++++|+...... |.... ..
T Consensus 4 i~~~~l~~~y---~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEc---CCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 4455555443 333789999998 899999999999999999999999843321 11100 00
Q ss_pred cccccch--------------------------------HHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEE
Q 003681 540 SASIPYF--------------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 540 ~a~i~~~--------------------------------d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLL 586 (803)
.+.+.+. ......++..+........+|.+.++... +-..+.+|+++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 1111111 11222333333334444555666555433 33448999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhC
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSL 630 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~l 630 (803)
||||||+|||+.....++ .++..+.+. |.|+|++||+++....
T Consensus 161 iLDEPta~LD~~~~~~l~-~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 161 LLDEPTAGLDPKGRRELL-ELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred EEcCCCCCCCHHHHHHHH-HHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 999999999999988887 777777665 7899999999988643
No 172
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.5e-17 Score=181.77 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=97.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------------hcCccccccccccc
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------------q~G~~Vpa~~a~i~ 544 (803)
...+++++|| |++++|+||||||||||||+|+|+.... ....++++....++
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4468999998 8999999999999999999999987211 01224444332221
Q ss_pred ---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHH
Q 003681 545 ---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 545 ---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~ 599 (803)
..++ ++..++..+......+.+|.++++...+ .+.+.+|+++||||||+|||+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1111 2223333333344456778888776554 44589999999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccc
Q 003681 600 GTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 600 g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~ 634 (803)
...+. .++..+. +.|+|+|++||+.+++ .++++.
T Consensus 200 r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 200 RTEMQ-DELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHH-HHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 88886 5555554 4689999999999875 344443
No 173
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.7e-17 Score=175.88 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=105.1
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc--------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------------------- 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-------------------- 532 (803)
+.+++++..|-... .+..++++++| |++++|+||||||||||+|+|+|+......
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 45666665542111 12368999998 899999999999999999999998622110
Q ss_pred ------------------------Cccccccc--ccc--cchH---------------------HHhhhCCcC-CCccCC
Q 003681 533 ------------------------GLMVPAES--ASI--PYFD---------------------AIMLHMKSY-DSPADG 562 (803)
Q Consensus 533 ------------------------G~~Vpa~~--a~i--~~~d---------------------~I~~~i~~~-d~l~~~ 562 (803)
-.++++.. ..+ ...+ .++..++.. +.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 12333321 111 0011 112222332 223334
Q ss_pred ccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003681 563 KSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 563 ~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~ 639 (803)
...+|.++++...+ .+.+.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+++.. .++++.-.+..
T Consensus 163 ~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 55677787775544 3448999999999999999998888876 77777777799999999999864 55554433333
No 174
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=5.1e-17 Score=187.10 Aligned_cols=152 Identities=12% Similarity=0.083 Sum_probs=104.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC---------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G--------------- 533 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+..... .|
T Consensus 4 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 4 LQISQGTFRL----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred EEEEeEEEEc----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5667776655 24569999998 89999999999999999999999862210 01
Q ss_pred ccccccccc-----------ccc-------------hHHHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEE
Q 003681 534 LMVPAESAS-----------IPY-------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~-----------i~~-------------~d~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLL 588 (803)
.++++.... +.. ...++..++..+......+.+|.++++...+ .+.+.+|+++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 122221100 000 1122333444333344566788888876654 445899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
||||+|||+.....+. .+++.+.+.|.|+|++||+.+... ++++.
T Consensus 160 DEPt~~LD~~~~~~l~-~~l~~~~~~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 160 DEPFDGLDVASRQQLA-ELLASLHQSGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence 9999999999988886 677777777899999999987753 34433
No 175
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.9e-17 Score=168.14 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=99.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--hhcC------ccccc-------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICG------LMVPA------- 538 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--aq~G------~~Vpa------- 538 (803)
+.++|+...|....+++.++++++| |++++|+||||||||||+++|+|+... ...| ..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 4567776665443356789999998 899999999999999999999998641 1122 11110
Q ss_pred ccccccchHHHhhhCCcCCCc--------cCCccchHHHHHHHH-HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003681 539 ESASIPYFDAIMLHMKSYDSP--------ADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 539 ~~a~i~~~d~I~~~i~~~d~l--------~~~~Stfs~em~~l~-~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle 609 (803)
..+++++...++..++..+++ ......++.++++.. .+.+.+.+|+++|||||++|+|+.....+. .+++
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~ 162 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCIR 162 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHH
Confidence 011222222222223333322 223456677776654 445558999999999999999999988886 5666
Q ss_pred HHHhc-CCEEEEE-ccChh-hhhCcccc
Q 003681 610 TLDNI-GCLGIVS-THLHG-IFSLPLKI 634 (803)
Q Consensus 610 ~L~~~-g~tvIiv-TH~~e-l~~l~~~~ 634 (803)
.+.+. +.++|++ +|+.+ +.+.+++.
T Consensus 163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i 190 (202)
T cd03233 163 TMADVLKTTTFVSLYQASDEIYDLFDKV 190 (202)
T ss_pred HHHHhCCCEEEEEEcCCHHHHHHhCCeE
Confidence 66543 6666655 55544 44555443
No 176
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.2e-17 Score=170.99 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=99.4
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 12 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 12 QIKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eEEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36667776544 24678999998 8999999999999999999999975320 111
Q ss_pred --------ccccccccccc--chHHH---------------------hhhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 --------LMVPAESASIP--YFDAI---------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I---------------------~~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...++ ..+++ +..++.. +........+|.++++... +.
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12232221111 11111 1111111 1112233456777776554 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.++. +++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~-~~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKK-DYTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhh-CCEEEEEECCHHHHHHhCCEE
Confidence 458999999999999999999988886 66666654 79999999999875 444433
No 177
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.71 E-value=8.2e-17 Score=170.19 Aligned_cols=151 Identities=12% Similarity=0.118 Sum_probs=100.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---hcC-----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---ICG----------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---q~G----------------- 533 (803)
+.+++++..| ++.++++++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 5 l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 5 IELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 5677776554 3468999998 8999999999999999999999986430 111
Q ss_pred --cccccccc-ccc-c---hHH-------------------HhhhCCcCC---CccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 534 --LMVPAESA-SIP-Y---FDA-------------------IMLHMKSYD---SPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 534 --~~Vpa~~a-~i~-~---~d~-------------------I~~~i~~~d---~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
.+++++.. .+. . .+. ++..++..+ .+......+|.++++... +.+.+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 13333321 111 0 011 111222221 122334567777776554 44458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~ 634 (803)
+++||||||+|+|+.....+. .+++.+.+ .|.++|++||+.+.. ..+++.
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhCCEE
Confidence 999999999999999888886 66666644 589999999999876 344443
No 178
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.3e-17 Score=174.52 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=101.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc--C-----------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--G----------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~--G----------------- 533 (803)
.+.+++++..|- ...+.++++++| |++++|+||||||||||+|+|+|+...... |
T Consensus 5 ~l~i~~l~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYP--DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcC--CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 366777765541 112468999998 899999999999999999999998743320 1
Q ss_pred ----cccccccc-cc---cchHHH---------------------hhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 534 ----LMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 534 ----~~Vpa~~a-~i---~~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
.++++... .+ ...+++ +..++..+........+|.++++... +.+.+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 12222210 00 111111 11122222222334566777766544 44458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~ 633 (803)
+++|||||++|||+.....+. .+++.+.+ .|.++|++||++++...+++
T Consensus 163 ~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~d~ 212 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQIL-KLIRKLKKKNNLTVISITHDIDEANMADQ 212 (282)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 999999999999999988887 56666654 58999999999988765443
No 179
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.71 E-value=8e-17 Score=169.34 Aligned_cols=151 Identities=19% Similarity=0.262 Sum_probs=99.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 2 IEIENLNLFY----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred EEEEEEEEEE----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 4456665444 23568999998 8999999999999999999999986432 011
Q ss_pred -------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|++...+ ...+++. ..++.. +........+|.++++... +.
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 1222221111 1111111 112222 1222334567777776554 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. .++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKK-KYTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-cCeEEEEecCHHHHHHhCCEE
Confidence 458999999999999999999988886 66666665 48999999999865 445443
No 180
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=8.2e-17 Score=176.72 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=106.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---hc------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---IC------------------ 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---q~------------------ 532 (803)
+.+++++..|....+...+++|||| |++++|+|+||||||||+|+|+|+.... ..
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 5677776655221112469999999 8999999999999999999999986310 01
Q ss_pred -------Ccccccccc--ccc---chH----------------------HHhhhCCcCC---CccCCccchHHHHHHHHH
Q 003681 533 -------GLMVPAESA--SIP---YFD----------------------AIMLHMKSYD---SPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 533 -------G~~Vpa~~a--~i~---~~d----------------------~I~~~i~~~d---~l~~~~Stfs~em~~l~~ 575 (803)
..++|++.. ..+ ..+ .++..++..+ .+......+|.+|++...
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 123343321 111 001 1122223221 122344567888887554
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
+.+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++|++|||++++ .++++...+..+
T Consensus 164 iArAL~~~P~llilDEPts~LD~~~~~~il-~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G 230 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 44558999999999999999999999887 66666654 689999999999886 455544333333
No 181
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.71 E-value=4.9e-17 Score=169.55 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=86.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----------cccccccccc---cchHHH---------------
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----------LMVPAESASI---PYFDAI--------------- 549 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----------~~Vpa~~a~i---~~~d~I--------------- 549 (803)
|++++|+||||||||||+|+|+|+..... .| .++++....+ ...+.+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 90 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE 90 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 89999999999999999999999873210 11 2334332211 111221
Q ss_pred --------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEE
Q 003681 550 --------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 619 (803)
Q Consensus 550 --------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvI 619 (803)
+..++..+......+.+|.++++...+ .+.+.+|+++||||||+|+|+.....+. .++..+. +.|.|+|
T Consensus 91 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~tii 169 (230)
T TIGR01184 91 RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRVTVL 169 (230)
T ss_pred HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence 112222222223345677777775544 4458999999999999999999988887 5555554 4589999
Q ss_pred EEccChhhh-hCcccc
Q 003681 620 VSTHLHGIF-SLPLKI 634 (803)
Q Consensus 620 ivTH~~el~-~l~~~~ 634 (803)
++||+.+.. ..+++.
T Consensus 170 ~~sH~~~~~~~~~d~v 185 (230)
T TIGR01184 170 MVTHDVDEALLLSDRV 185 (230)
T ss_pred EEeCCHHHHHHhcCEE
Confidence 999999864 445443
No 182
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.4e-17 Score=169.26 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=98.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--h--hhcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--l--aq~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.. . ...|
T Consensus 7 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 7 MEARGLSFFY----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEeeeEEEE----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5677776554 24579999998 89999999999999999999999742 1 0111
Q ss_pred -------cccccccccc--cchHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHHH-H
Q 003681 534 -------LMVPAESASI--PYFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRSI-V 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~i-L 577 (803)
.+++++...+ ...+++. ..++..+ ........+|.++++...+ .
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 1233322111 1111111 0111110 1122345677777775544 4
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.+.. .++++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tvii~tH~~~~~~~~~d~ 217 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKA-RYTIIIVTHNMQQAARVSDV 217 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCeEEEEEecHHHHHHhCCE
Confidence 458999999999999999999988886 66666654 78999999999875 44443
No 183
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.70 E-value=7.4e-17 Score=170.79 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=105.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-----------------hh----
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GI---- 531 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-----------------aq---- 531 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ..
T Consensus 6 ~l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEc----CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 36677776554 23579999998 899999999999999999999998621 00
Q ss_pred --------cCccccccccc-----ccchH----------------------HHhhhCCcCC-CccCCccchHHHHHHHHH
Q 003681 532 --------CGLMVPAESAS-----IPYFD----------------------AIMLHMKSYD-SPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 532 --------~G~~Vpa~~a~-----i~~~d----------------------~I~~~i~~~d-~l~~~~Stfs~em~~l~~ 575 (803)
...++++.... +...+ .++..++..+ ........+|.++++...
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 01234443210 00011 1122233321 233445667778776554
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.++.. .+++.-.+.++
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 44458999999999999999999888886 55555544 5899999999998875 45443333333
No 184
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.5e-17 Score=172.42 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=100.9
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
+.+++++..|-... ..+.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 45566654441100 01468999998 8999999999999999999999986211
Q ss_pred --hcCccccccc--ccc--cchHHH---------------------hhhCCcCC-CccCCccchHHHHHHHHH-HHHhCC
Q 003681 531 --ICGLMVPAES--ASI--PYFDAI---------------------MLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~--a~i--~~~d~I---------------------~~~i~~~d-~l~~~~Stfs~em~~l~~-iLa~a~ 581 (803)
....++|+.. ..+ ...+++ +..++..+ ........+|.++++... +.+.+.
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 0112344432 111 111111 11222221 123334567788777554 444589
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+|+++||||||+|||+.....+. .++..+.+.|.|+|++||+.++. .++++.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 163 EPKILVLDEPTAGLDPKGRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEE
Confidence 99999999999999999888886 66666666689999999999876 344433
No 185
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=6.4e-17 Score=164.34 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=96.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-----------cccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-----------LMVP 537 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-----------~~Vp 537 (803)
+.+++++..| +++.+++ ++| |++++|+||||||||||+|+|+|+..... .| .+++
T Consensus 2 l~~~~l~~~~----~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (195)
T PRK13541 2 LSLHQLQFNI----EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG 76 (195)
T ss_pred eEEEEeeEEE----CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEecc
Confidence 3455665444 2344554 877 89999999999999999999999862111 11 1233
Q ss_pred cccccc---cchHH----------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 538 AESASI---PYFDA----------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 538 a~~a~i---~~~d~----------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
+..... ...++ ++..++..+........+|.++++... +.+.+.+|+++|+|||++|+|+
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 222111 11111 112223322233344567777776554 4445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
.....+. .+++...+.|.++|++||+.+....+
T Consensus 157 ~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 157 ENRDLLN-NLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEEeCCccccchh
Confidence 9987776 56665666789999999998876554
No 186
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=9e-17 Score=173.08 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=103.0
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------- 531 (803)
+.+++++..|-... .++.+++|++| |++++|+||||||||||+|+|+|+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 45566665542111 12469999999 89999999999999999999999862110
Q ss_pred ---cCccccccc--ccc--cchH---------------------HHhhhCCcC-CCccCCccchHHHHHHHHHHH-HhCC
Q 003681 532 ---CGLMVPAES--ASI--PYFD---------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIV-TATT 581 (803)
Q Consensus 532 ---~G~~Vpa~~--a~i--~~~d---------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~iL-a~a~ 581 (803)
.-.++++.. ..+ ...+ .++..++.. +........+|.++++...+. +.+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~ 162 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM 162 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 112344431 111 0111 112223332 222334566778877765544 4489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~ 634 (803)
+|+++||||||+|+|+.....+. .+++.+.+ .|.|+|++||++++. ..+++.
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 99999999999999999988886 67777754 589999999999875 455543
No 187
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.70 E-value=9.5e-17 Score=166.11 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=93.1
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c--C---------------------cccccccc
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--G---------------------LMVPAESA 541 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~--G---------------------~~Vpa~~a 541 (803)
+.++++++| |++++|+||||||||||+|+|+|+..... . | .++++...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 478999998 89999999999999999999999862110 0 1 12333221
Q ss_pred cccc---hHH---------------------HhhhCCcCCCc-cCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCC
Q 003681 542 SIPY---FDA---------------------IMLHMKSYDSP-ADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 542 ~i~~---~d~---------------------I~~~i~~~d~l-~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGL 595 (803)
..+. .+. ++..++..+.. ......+|.++++... +.+.+.+|+++||||||+|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1110 001 11222222211 2234456777766554 34458999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 596 D~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
|+.....+. .+++.+.+.|+|+|++||+.++.. +++
T Consensus 181 D~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 181 DAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 999988886 666667767899999999998764 443
No 188
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=9.1e-17 Score=173.42 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=105.4
Q ss_pred EEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------
Q 003681 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------- 531 (803)
+.+++++..|-... .+..+++|++| |++++|+||||||||||+|+|+|+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 45667765552111 12569999998 89999999999999999999999862210
Q ss_pred ---cCcccccccc-cc---cchHH---------------------HhhhCCcC-CCccCCccchHHHHHHHHHH-HHhCC
Q 003681 532 ---CGLMVPAESA-SI---PYFDA---------------------IMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATT 581 (803)
Q Consensus 532 ---~G~~Vpa~~a-~i---~~~d~---------------------I~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~ 581 (803)
...++++... .+ ...++ ++..++.. +........+|.++++...+ .+.+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1123443310 01 11111 11223332 12233456778888775554 34489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
+|+++||||||+|||+.....+. .++..+.+ .|.|||++||+++.. .++++...+..+
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999988886 66666654 589999999999875 445544333333
No 189
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.9e-17 Score=176.29 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=103.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh---hh-------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---GI------------------- 531 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l---aq------------------- 531 (803)
+.++|++..|....+...+++|+|| |++++|+|+||||||||+|+|+|+... ..
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 5667776655322234579999998 899999999999999999999998521 00
Q ss_pred ------cCcccccccc--ccc---chHHH---------------------------hhhCCcCCC---ccCCccchHHHH
Q 003681 532 ------CGLMVPAESA--SIP---YFDAI---------------------------MLHMKSYDS---PADGKSSFQVEM 570 (803)
Q Consensus 532 ------~G~~Vpa~~a--~i~---~~d~I---------------------------~~~i~~~d~---l~~~~Stfs~em 570 (803)
.-.+++++.. ..+ ..+++ +..++..+. .......+|.+|
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 1123444321 011 11111 112222210 122334678888
Q ss_pred HHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 571 SEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 571 ~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
++... +.+.+.+|++||+||||+|||+.....+. .+++.+.+ .|.|+||+|||++++. ++++.
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 77554 44558999999999999999999988887 66666765 5899999999998874 45443
No 190
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=9.2e-17 Score=167.34 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc--------------------Cccccccccccc--ch
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--------------------GLMVPAESASIP--YF 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~--------------------G~~Vpa~~a~i~--~~ 546 (803)
++.++++++| |++++|+||||||||||+|+|+|+...... -.++++....++ ..
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 3568899888 899999999999999999999998632110 123333321111 01
Q ss_pred HHHhh---------------hCCcCCC-----------ccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHH
Q 003681 547 DAIML---------------HMKSYDS-----------PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 547 d~I~~---------------~i~~~d~-----------l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~ 599 (803)
+++.. ..+..+. .......+|.++++... +.+.+.+|+++||||||+|+|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11100 0010000 01112356777766544 444589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
...+. .++..+.+ |.++|++||+.+....++
T Consensus 173 ~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~~d 203 (236)
T cd03253 173 EREIQ-AALRDVSK-GRTTIVIAHRLSTIVNAD 203 (236)
T ss_pred HHHHH-HHHHHhcC-CCEEEEEcCCHHHHHhCC
Confidence 88886 66666666 899999999998875543
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.70 E-value=7.9e-17 Score=169.83 Aligned_cols=151 Identities=20% Similarity=0.237 Sum_probs=99.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C---------------- 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~---------------- 532 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+..... .
T Consensus 4 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 4 LQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred EEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5667776554 23568999998 89999999999999999999999862110 0
Q ss_pred --------Cccccccccc-----ccchHH----------------------HhhhCCcCC-CccCCccchHHHHHHHHH-
Q 003681 533 --------GLMVPAESAS-----IPYFDA----------------------IMLHMKSYD-SPADGKSSFQVEMSEIRS- 575 (803)
Q Consensus 533 --------G~~Vpa~~a~-----i~~~d~----------------------I~~~i~~~d-~l~~~~Stfs~em~~l~~- 575 (803)
-.++++.... +...++ ++..++..+ ........+|.++++...
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 1222322110 000011 112222211 222334556777766544
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Cccc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+ .+.|.++|++||+.+... .+++
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 44458999999999999999999998887 555555 445899999999998765 3443
No 192
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.9e-17 Score=165.24 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=96.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------hcCc--------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------ICGL-------- 534 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------q~G~-------- 534 (803)
.+.++++.-+| +.+.+++||++ +.+++|+||+|||||||||++..+.-+- ..|.
T Consensus 7 ~~~~~~l~~yY----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 7 AIEVRDLNLYY----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred eeEecceeEEE----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35667776655 47789999999 7999999999999999999999876110 0111
Q ss_pred ---------ccccccccc--cchHHHhhhC---C----------------------cCCCccCCccchHHHHHHHHH-HH
Q 003681 535 ---------MVPAESASI--PYFDAIMLHM---K----------------------SYDSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 535 ---------~Vpa~~a~i--~~~d~I~~~i---~----------------------~~d~l~~~~Stfs~em~~l~~-iL 577 (803)
.|.+...-+ .+++++-... + +.|.+......+|.+.+|..- +.
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 111211111 1222211100 0 111222222345566554332 33
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+.+|++||||||||+|||.....| +.++..|++ .-|||++||++.-+.
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~-~yTIviVTHnmqQAa 212 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKI-EELITELKK-KYTIVIVTHNMQQAA 212 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHh-ccEEEEEeCCHHHHH
Confidence 34899999999999999999999998 588888874 689999999998764
No 193
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.70 E-value=1.2e-16 Score=167.58 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=95.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-hhhcC-------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICG------------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-laq~G------------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. ....|
T Consensus 2 i~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 2 LSIKDLHVSV----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred eEEEEEEEEe----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 4556665443 24578999998 89999999999999999999999841 11111
Q ss_pred ---cccccccccccchH-HH-----h-------------------------hhCCcCCC-ccCCc-cchHHHHHHHHHH-
Q 003681 534 ---LMVPAESASIPYFD-AI-----M-------------------------LHMKSYDS-PADGK-SSFQVEMSEIRSI- 576 (803)
Q Consensus 534 ---~~Vpa~~a~i~~~d-~I-----~-------------------------~~i~~~d~-l~~~~-Stfs~em~~l~~i- 576 (803)
.++++....++... .. + ..++..+. ..... ..+|.++++...+
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 11222211111000 00 0 00011000 01111 2577787775544
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+.+.|+|++||+.++...
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVA-DGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 4458999999999999999999988886 6667777778999999999987654
No 194
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=171.64 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=100.9
Q ss_pred CcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--h--hhcC------------
Q 003681 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GICG------------ 533 (803)
Q Consensus 474 g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--l--aq~G------------ 533 (803)
+...+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+.. . ...|
T Consensus 36 ~~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYY----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 44457888887654 24579999998 89999999999999999999999742 1 0111
Q ss_pred -----------cccccccccc--cchHHH----------------------hhhCCcC----CCccCCccchHHHHHHHH
Q 003681 534 -----------LMVPAESASI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 534 -----------~~Vpa~~a~i--~~~d~I----------------------~~~i~~~----d~l~~~~Stfs~em~~l~ 574 (803)
.+++++...+ ...+++ +..++.. +........+|.++++..
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 1233322111 111111 1111111 112233456677777655
Q ss_pred H-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 575 S-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 575 ~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
. +.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.++.. ++++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~-~~tvIivsH~~~~~~~~~d~ 250 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRG-SYTIMIVTHNMQQASRVSDY 250 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 4 44458999999999999999999888886 56666655 589999999998853 4443
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.70 E-value=9.3e-17 Score=165.20 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=89.4
Q ss_pred eeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------hcCcccccccccc---cchHHH--
Q 003681 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASI---PYFDAI-- 549 (803)
Q Consensus 497 lndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------q~G~~Vpa~~a~i---~~~d~I-- 549 (803)
+.+++| |++++|+||||||||||+|+|+|+.... ....+++++...+ ...+++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 456666 8999999999999999999999986211 0112334332211 111222
Q ss_pred -------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003681 550 -------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 550 -------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle 609 (803)
+..++..+........+|.++++...+ .+.+.+|+++||||||+|+|+.....+. .+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~ 172 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML-ALVK 172 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHH
Confidence 111222222222234567777665544 4458999999999999999999988887 5666
Q ss_pred HHHh-cCCEEEEEccChhhh-hCccc
Q 003681 610 TLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 610 ~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
.+.+ .+.|+|++||+.++. +++++
T Consensus 173 ~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 173 QLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred HHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 6654 589999999999875 34443
No 196
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.3e-16 Score=166.41 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=95.4
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------cCccccccccccc---chH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CGLMVPAESASIP---YFD 547 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------~G~~Vpa~~a~i~---~~d 547 (803)
++.++++++| |++++|+||||+|||||+|+|+|+..... .-.+++++...++ ..+
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 4579999988 89999999999999999999999873211 1122333321111 111
Q ss_pred ---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 548 ---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 548 ---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
.++..++..+........+|.++++... +.+.+.+|+++|||||++|+|+.....+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~- 170 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ- 170 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 1122233333333334567777766544 44558999999999999999999988886
Q ss_pred HHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003681 606 SIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 606 alle~L~~-~g~tvIivTH~~el~-~l~~~ 633 (803)
.+++.+.+ .|.|+|++||+.++. +.+++
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 66666655 489999999999874 44443
No 197
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.70 E-value=1e-16 Score=170.89 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=99.3
Q ss_pred eEEEeccCccccccC-----CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------
Q 003681 477 CLKMNGLSPYWFDAA-----EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~-----~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------- 530 (803)
.+.+++++..|.... +++.++++++| |++++|+||||||||||||+|+|+....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 367778876552110 13579999998 8999999999999999999999987211
Q ss_pred ---hcCcccccccc--ccc---chH----------------------HHhhhCCcC-CCccCCccchHHHHHHHHH-HHH
Q 003681 531 ---ICGLMVPAESA--SIP---YFD----------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVT 578 (803)
Q Consensus 531 ---q~G~~Vpa~~a--~i~---~~d----------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~-iLa 578 (803)
+...++|+... ..+ ..+ .++..++.. +......+.+|.++++... +.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 01123333221 000 000 111222221 1112223567777776554 445
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~ 629 (803)
.+.+|+++||||||+|||+.....+. .++..+.+ .|.++|++||+.+...
T Consensus 164 l~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 164 LILRPKVIIADEALASLDMSMRSQLI-NLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHhCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 58999999999999999998888886 56666654 5899999999998764
No 198
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2e-16 Score=168.61 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=104.4
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC-------------
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG------------- 533 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G------------- 533 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+... ...|
T Consensus 18 ~~~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 18 EIALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CeEEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3457888887655 34679999998 899999999999999999999998631 0111
Q ss_pred ----------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH
Q 003681 534 ----------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 ----------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~ 575 (803)
.++|+....+ ...+++. ..++.. +........+|.++++...
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 2233322111 1111111 111111 1122334567777776554
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~ 639 (803)
+.+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.. +++++...+..
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKK-NYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 34448999999999999999999888886 66666654 78999999999875 45554433333
No 199
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.7e-17 Score=167.15 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=97.7
Q ss_pred CcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccc-----------cc
Q 003681 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV-----------PA 538 (803)
Q Consensus 474 g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~V-----------pa 538 (803)
...-|.++|+.-.+ +++.+++|+++ |+-++|+|||||||||||+++++-.........+ +.
T Consensus 28 ~~~li~l~~v~v~r----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~e 103 (257)
T COG1119 28 NEPLIELKNVSVRR----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103 (257)
T ss_pred CcceEEecceEEEE----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHH
Confidence 33446777765433 68999999998 8999999999999999999999976221000000 00
Q ss_pred ccccccch-------------------H----------------------HHhhhCCcCCCccCCccchHHHHHHHHHHH
Q 003681 539 ESASIPYF-------------------D----------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 539 ~~a~i~~~-------------------d----------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iL 577 (803)
-+..++.+ . .+...++...-......+.|.+.++...|.
T Consensus 104 lrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA 183 (257)
T ss_pred HHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH
Confidence 00001000 0 122222322222333445566666655433
Q ss_pred -HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCEEEEEccChhhhh
Q 003681 578 -TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHGIFS 629 (803)
Q Consensus 578 -a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~--g~tvIivTH~~el~~ 629 (803)
+.+.+|.|+|||||++|+|...+..+. ..+..+... +.++|++||+.+.+-
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll-~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLL-NRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHH-HHHHHHhcCCCCceEEEEEcchhhcc
Confidence 348999999999999999999988887 555555443 788999999988753
No 200
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.69 E-value=1.1e-16 Score=166.05 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=92.7
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh---hhh-----c------------Cccccccccccc---ch
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LGI-----C------------GLMVPAESASIP---YF 546 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~---laq-----~------------G~~Vpa~~a~i~---~~ 546 (803)
+.++++++| |++++|+||||||||||+|+|+|+.. ... . ..+++++...++ ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 678999988 89999999999999999999999865 211 0 113333322111 11
Q ss_pred HHHh-------------------------hhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 547 DAIM-------------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 547 d~I~-------------------------~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
+++. ..++..+........+|.++++... +.+.+.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 1111 0011111111223456667666444 4445899999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccCh--hhhhCcccc
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKI 634 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~--el~~l~~~~ 634 (803)
..+. .++..+.+.|.|+|++||+. ++.+.+++.
T Consensus 180 ~~~~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 180 LNLV-STLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred HHHH-HHHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 8886 56666666689999999997 455555543
No 201
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=166.75 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=99.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--hh--hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--la--q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.- .. ..|
T Consensus 4 l~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 4 IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEE----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5566666544 24578999998 89999999999999999999998631 10 011
Q ss_pred -------cccccccccc--cchHHH----------------------hhhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I----------------------~~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|+....+ ...+++ +..++..+ ........+|.++++... +.
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 2233321111 111111 11111111 112223456777766544 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ ++++|++||+.+.. +.+++.-.+..+
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 458999999999999999999988886 66666654 78999999999875 445543333333
No 202
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=5.1e-17 Score=158.01 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=81.2
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
..++++++| |++++|+||||+|||||+++|+|+........++... ..+.+. ..+|.+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~-----------------~~lS~G 74 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYF-----------------EQLSGG 74 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEE-----------------ccCCHH
Confidence 468888888 8999999999999999999999875332111111110 011110 116777
Q ss_pred HHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 570 MSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 570 m~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+++... +.+.+.+|+++|+|||++|+|+.....+. .+++.+ +.++|++||+.+...
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEEECCHHHHH
Confidence 766554 44458999999999999999999888776 444444 579999999988763
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.69 E-value=1.6e-16 Score=169.55 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=101.0
Q ss_pred EEEeccCcccccc-----CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------
Q 003681 478 LKMNGLSPYWFDA-----AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ 530 (803)
Q Consensus 478 i~l~~l~~~~~~~-----~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------ 530 (803)
+.+++++..|-.. ..++.+++|++| |++++|+||||||||||+|+|+|+....
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 4566665544110 014679999998 8999999999999999999999986211
Q ss_pred -----hcCcccccccc-cc----cchH----------------------HHhhhCCcC-CCccCCccchHHHHHHHHH-H
Q 003681 531 -----ICGLMVPAESA-SI----PYFD----------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 531 -----q~G~~Vpa~~a-~i----~~~d----------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~-i 576 (803)
....++++... .+ ...+ .++..++.. +........+|.++++... +
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 01122333221 01 0011 122222222 1223344567777766544 4
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ .+.|+|++||+.++.. ++++.
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCCEE
Confidence 4558999999999999999999888886 66666654 4899999999998764 45443
No 204
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.69 E-value=1.6e-16 Score=167.34 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=98.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-hhhcC------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICG------------------ 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-laq~G------------------ 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. -...|
T Consensus 7 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred eEEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 36777776554 24579999998 89999999999999999999999721 11111
Q ss_pred ----ccccccccccc---chHH----------------------------HhhhCCcCC-CccCCcc-chHHHHHHHHH-
Q 003681 534 ----LMVPAESASIP---YFDA----------------------------IMLHMKSYD-SPADGKS-SFQVEMSEIRS- 575 (803)
Q Consensus 534 ----~~Vpa~~a~i~---~~d~----------------------------I~~~i~~~d-~l~~~~S-tfs~em~~l~~- 575 (803)
.++++....++ ..+. ++..++..+ ....... .+|.++++...
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 11222211110 0011 111122211 1112222 47777776554
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+.+.+.+|+++||||||+|+|+.....+. .++..+.+.|.|+|++||+.++...
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHh
Confidence 44458999999999999999999988886 6666676678999999999987653
No 205
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.4e-16 Score=170.72 Aligned_cols=154 Identities=15% Similarity=0.066 Sum_probs=100.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G 533 (803)
+.+++++..|- ...+..++++++| |++++|+||||+|||||+++|+|+..... ..
T Consensus 5 l~~~~l~~~~~-~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 5 LEVENLVFKYE-KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEEEcC-CCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 56667765441 1112468999998 89999999999999999999999872111 11
Q ss_pred cccccccc-cc---cchHHHh---------------------hhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEE
Q 003681 534 LMVPAESA-SI---PYFDAIM---------------------LHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~I~---------------------~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLL 587 (803)
.++++... .+ ...+++. ..++..+........+|.++++...+ .+.+.+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23333321 11 1111221 11121111222334567777765544 34489999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccc
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~ 633 (803)
|||||+|||+.....+. .++..+.+ .|.|+|++||+.+....+++
T Consensus 164 lDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~ 209 (277)
T PRK13642 164 LDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDR 209 (277)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 99999999999999987 56666665 48999999999998765443
No 206
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=8.2e-17 Score=160.02 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccc---------cccc--ccccchHHHhhhCCcCCCccCCcc-------
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV---------PAES--ASIPYFDAIMLHMKSYDSPADGKS------- 564 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~V---------pa~~--a~i~~~d~I~~~i~~~d~l~~~~S------- 564 (803)
|++++|+||+|+||||||+.|+|+...++....+ |+++ +.+++-+++|.++++.+|+..+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a 104 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNA 104 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCH
Confidence 8999999999999999999999998655433222 4433 556777889999999999877654
Q ss_pred ------------------------chHHHHHHHHHHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCE
Q 003681 565 ------------------------SFQVEMSEIRSIVTA--TTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 617 (803)
Q Consensus 565 ------------------------tfs~em~~l~~iLa~--a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~t 617 (803)
++|.+.++.. ++++ +.+..++||||||+.|||.-+..+. +++..+ .+++.|
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv-ALARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~~T 182 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV-ALARCLVREQPILLLDEPFSALDPALRAEML-ALVSQLCDERKMT 182 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccccCchHHHHH-HHHHHHhccCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhCCE
Confidence 1222322222 4444 7899999999999999999999987 555555 678999
Q ss_pred EEEEccChhhhh-Cccccccccccee
Q 003681 618 GIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 618 vIivTH~~el~~-l~~~~~~v~~~~m 642 (803)
++|+||..+.+. ++.+...+.++.+
T Consensus 183 llmVTH~~~Da~~ia~~~~fl~~Gri 208 (231)
T COG3840 183 LLMVTHHPEDAARIADRVVFLDNGRI 208 (231)
T ss_pred EEEEeCCHHHHHHhhhceEEEeCCEE
Confidence 999999987653 4443333333333
No 207
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.69 E-value=1.9e-16 Score=174.29 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=104.9
Q ss_pred eEEEeccCccccccC---------CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------
Q 003681 477 CLKMNGLSPYWFDAA---------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~---------~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------- 530 (803)
.++++|++..|.... +...+++|+|| |++++|+|+||||||||+|+|+|+....
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 367778876552111 13578999998 8999999999999999999999986211
Q ss_pred ----------hcCccccccc--cccc---chHHH-----------------------hhhCCcCC-CccCCccchHHHHH
Q 003681 531 ----------ICGLMVPAES--ASIP---YFDAI-----------------------MLHMKSYD-SPADGKSSFQVEMS 571 (803)
Q Consensus 531 ----------q~G~~Vpa~~--a~i~---~~d~I-----------------------~~~i~~~d-~l~~~~Stfs~em~ 571 (803)
....+++++. ...+ ..+++ +..++..+ ........+|.+|+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~ 167 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQC 167 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHH
Confidence 0112344432 1111 11121 11222211 12233456788887
Q ss_pred HHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 572 EIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 572 ~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
+... +.+.+.+|+|+|+||||+|||+.....+. .+++.+.+ .|.|+||+|||++++. ++++.
T Consensus 168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVV-NLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 7554 44559999999999999999999999987 66666654 5899999999999875 45443
No 208
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=168.06 Aligned_cols=152 Identities=19% Similarity=0.249 Sum_probs=98.9
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC--------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG-------------- 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G-------------- 533 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 12 ~~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEe----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 347778886655 24579999998 899999999999999999999998531 0112
Q ss_pred ---------ccccccccccc--chHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-
Q 003681 534 ---------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS- 575 (803)
Q Consensus 534 ---------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~- 575 (803)
.+++++...++ ..+++. ..++.. +........+|.++++...
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 12232211111 111111 111110 0112223456777766544
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. .++++
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQ-DYTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 44458999999999999999999888886 66666654 68999999999875 34443
No 209
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=166.22 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=99.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+++|+|+.... ..|
T Consensus 4 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred EEEEeeEEEE----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 5566766544 24579999998 8999999999999999999999985320 111
Q ss_pred -----cccccccccc---cchHHHh-----------------------hhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 -----LMVPAESASI---PYFDAIM-----------------------LHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -----~~Vpa~~a~i---~~~d~I~-----------------------~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|+....+ ...+++. ..++..+ ........+|.++++... +.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 1233322111 1112221 1111110 122334567777776554 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.+.. ..+++
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIE-SLFLELKK-DMTIVLVTHFPQQAARISDY 214 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhcCE
Confidence 458999999999999999999988886 56666654 79999999999875 34443
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=184.12 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=104.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------C 532 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------------~ 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .
T Consensus 5 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 5 LSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred EEEeeeEEEE----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5667776554 24579999998 89999999999999999999999862110 0
Q ss_pred Ccccccccccc---cchHH------------------------HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 533 GLMVPAESASI---PYFDA------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
-.++++....+ ...++ ++..++..+......+.+|.++++...+ .+.+.+|+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 12333322111 11111 1222232222333456778888776554 44589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
++||||||+|||+.....+. .++..+.+.|.++|++||+.++.. ++++.
T Consensus 161 lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiiitHd~~~~~~~~d~i 210 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRMEEIFALCDAI 210 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999988886 666667777999999999998763 34443
No 211
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=167.25 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=98.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 7 IIETENLNLFY----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred eEEEeeeEEEe----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46777886654 24579999998 8999999999999999999999986431 111
Q ss_pred --------ccccccccc--ccchHHHhh----------------------hCCc----CCCccCCccchHHHHHHHHH-H
Q 003681 534 --------LMVPAESAS--IPYFDAIML----------------------HMKS----YDSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 534 --------~~Vpa~~a~--i~~~d~I~~----------------------~i~~----~d~l~~~~Stfs~em~~l~~-i 576 (803)
.+++++... ....+++.. .++. .+........+|.++++... +
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 122222111 111111110 0000 00112223456677766544 3
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
.+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.+.+ .++++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKE-SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 4448999999999999999999988887 56666654 78999999999875 34443
No 212
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=168.44 Aligned_cols=147 Identities=16% Similarity=0.266 Sum_probs=98.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 19 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 19 KMRARDVSVFY----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred eEEEEeEEEEE----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 47778887655 24679999998 899999999999999999999998642 1112
Q ss_pred --------cccccccccc--cchHHHh-----------------------hhCCcCC----CccCCccchHHHHHHHHH-
Q 003681 534 --------LMVPAESASI--PYFDAIM-----------------------LHMKSYD----SPADGKSSFQVEMSEIRS- 575 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I~-----------------------~~i~~~d----~l~~~~Stfs~em~~l~~- 575 (803)
.++++....+ ...+++. ..++..+ ........+|.++++...
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1223221111 1111111 1111111 111233456777766544
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~-~~tiiivtH~~~~~~ 226 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQ-NYTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhc-CCeEEEEEcCHHHHH
Confidence 44458999999999999999999988886 66666655 689999999998763
No 213
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=8.6e-17 Score=169.90 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------cCccccccccc---ccchH-----------------HHhhhCC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESAS---IPYFD-----------------AIMLHMK 554 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------~G~~Vpa~~a~---i~~~d-----------------~I~~~i~ 554 (803)
|++++|+||||||||||+|+|+|+..... .-.++|+.... ....+ .++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 79999999999999999999999863211 11244443211 11111 1222333
Q ss_pred cCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh
Q 003681 555 SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 555 ~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~ 629 (803)
..+......+.+|.++++... +.+.+.+|+++||||||++||+.....+. .++..+. +.+.++|++||+.++..
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333333445677878776554 44558999999999999999999998887 5555554 45899999999998765
No 214
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=1.1e-16 Score=161.24 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=82.2
Q ss_pred Cceeeecc-CC--CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 493 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 493 ~~~VlndV-sL--Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
++.+++++ ++ |++++|+||||||||||+|+|+|+.........+... .+... .+.. .+|.+
T Consensus 12 ~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~i~~~---------~q~~-----~LSgG 75 (177)
T cd03222 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--TPVYK---------PQYI-----DLSGG 75 (177)
T ss_pred CEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--EEEEE---------cccC-----CCCHH
Confidence 34555553 22 8999999999999999999999975332111111110 01100 0000 17777
Q ss_pred HHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhh
Q 003681 570 MSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 629 (803)
Q Consensus 570 m~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g-~tvIivTH~~el~~ 629 (803)
+++...+ .+.+.+|+++|||||++|+|+.....+. .+++.+.+.+ .++|++||+++...
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEECCHHHHH
Confidence 7775554 4458999999999999999999988887 5555555554 89999999998765
No 215
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=9e-17 Score=171.45 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=93.7
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC--cccccccc---cccchHH---------
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--LMVPAESA---SIPYFDA--------- 548 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G--~~Vpa~~a---~i~~~d~--------- 548 (803)
.++.++++++| |++++|+||||||||||+++|+|+..... .| .++++... .+...+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 45678999998 89999999999999999999999863221 11 11111110 0111111
Q ss_pred ------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003681 549 ------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 549 ------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g 615 (803)
++...+..+.+......+|.++++... +.+.+.+|+++|||||++|+|+.....+. .++..+.+.|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQN 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCC
Confidence 111222333333445667777776544 44558999999999999999999888886 5666666778
Q ss_pred CEEEEEccChhhhh
Q 003681 616 CLGIVSTHLHGIFS 629 (803)
Q Consensus 616 ~tvIivTH~~el~~ 629 (803)
.++|++||+.+...
T Consensus 194 ~tiIiisH~~~~i~ 207 (264)
T PRK13546 194 KTIFFVSHNLGQVR 207 (264)
T ss_pred CEEEEEcCCHHHHH
Confidence 99999999988753
No 216
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=2.7e-16 Score=182.02 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=105.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-hh-----c--------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-GI-----C-------------- 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-aq-----~-------------- 532 (803)
.+.+++++..|- ..+++.+++|++| |++++|+||||||||||+|+|+|+... .. .
T Consensus 259 ~l~~~~l~~~~~-~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDP-VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccc-cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 477888876541 1124568999998 899999999999999999999998531 00 0
Q ss_pred --Ccccccccc---c---ccchH--------------------------HHhhhCCcC-CCccCCccchHHHHHHHHHHH
Q 003681 533 --GLMVPAESA---S---IPYFD--------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 533 --G~~Vpa~~a---~---i~~~d--------------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~iL 577 (803)
-.++++... . +...+ .++..++.. +.......++|.++++...+.
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 123333310 1 11111 122223332 123334567788888766544
Q ss_pred -HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 578 -TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 578 -a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+++++. ++++
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIY-KLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 458999999999999999999988886 777778777999999999998753 4443
No 217
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=169.89 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=105.9
Q ss_pred EEEeccCcccccc-CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccc---------------
Q 003681 478 LKMNGLSPYWFDA-AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP--------------- 537 (803)
Q Consensus 478 i~l~~l~~~~~~~-~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vp--------------- 537 (803)
|.++++++.|... .+...+++|+|| |++++|+|.+|+|||||+|+|.++......-.+|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 5667777666442 223578999999 89999999999999999999999873322111111
Q ss_pred -cccccccchHHHhhhCCcCCCc-------------------------------cCCccchHHHHHHHHHHH-HhCCCCe
Q 003681 538 -AESASIPYFDAIMLHMKSYDSP-------------------------------ADGKSSFQVEMSEIRSIV-TATTSRS 584 (803)
Q Consensus 538 -a~~a~i~~~d~I~~~i~~~d~l-------------------------------~~~~Stfs~em~~l~~iL-a~a~~ps 584 (803)
.+.+.+++..+++...++.+|+ ....+.+|.+.+|...|. +.+.+|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 0112333333344444444443 344456677777655544 3489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~ 629 (803)
++|.||+||+|||.....|. .++..+ .+.|.|++++||.++..+
T Consensus 162 iLL~DEaTSALDP~TT~sIL-~LL~~In~~lglTIvlITHEm~Vvk 206 (339)
T COG1135 162 ILLCDEATSALDPETTQSIL-ELLKDINRELGLTIVLITHEMEVVK 206 (339)
T ss_pred EEEecCccccCChHHHHHHH-HHHHHHHHHcCCEEEEEechHHHHH
Confidence 99999999999999999998 555555 677999999999999864
No 218
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=2.3e-16 Score=173.23 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=105.6
Q ss_pred eEEEeccCccccccC------CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------
Q 003681 477 CLKMNGLSPYWFDAA------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~------~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------- 530 (803)
.++++|++..|.... +...+++||+| |++++|+|+||||||||+++|+|+....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 367777776552111 12578999999 8999999999999999999999986211
Q ss_pred -------hcCcccccccc--ccc---ch----------------------HHHhhhCCcCC-CccCCccchHHHHHHHHH
Q 003681 531 -------ICGLMVPAESA--SIP---YF----------------------DAIMLHMKSYD-SPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 531 -------q~G~~Vpa~~a--~i~---~~----------------------d~I~~~i~~~d-~l~~~~Stfs~em~~l~~ 575 (803)
..-.+++++.. ..+ .. ..++..++..+ ........+|.+|++...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~ 164 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA 164 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH
Confidence 01123343321 111 00 11122223221 123334567888877554
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNA 637 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~-l~~~~~~v 637 (803)
+.+.+.+|++||+||||+|||+.....+. .++..+. +.|.|+|++|||++++. ++++...+
T Consensus 165 iArAL~~~P~lLilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 165 IARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred HHHHHHcCCCEEEEECCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45558999999999999999999999887 5555554 46999999999999875 45544333
No 219
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.69 E-value=1e-16 Score=179.17 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----------------------------cCcccccc
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----------------------------CGLMVPAE 539 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----------------------------~G~~Vpa~ 539 (803)
+...+++|+|| |++++|+||||||||||+|+|+|+..... .-.++++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 45678899988 89999999999999999999999872210 01223333
Q ss_pred ccccc---chHHH---------------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCC
Q 003681 540 SASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 540 ~a~i~---~~d~I---------------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sG 594 (803)
...++ ..+++ +..++..+........+|.++++...+ .+.+.+|+++||||||+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~ 194 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSA 194 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 22222 11111 122232222333345677888776554 444899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
||+.....+...+.+...+.+.|+||+||+++++ +++++...+..+.+
T Consensus 195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999987444443344589999999999875 55555444444433
No 220
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.69 E-value=1.8e-16 Score=169.84 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=97.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------hcC-------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICG------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------q~G------------- 533 (803)
+.+++++..+ +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 2 l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVAR----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEE----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 4556665443 34679999998 8999999999999999999999986432 011
Q ss_pred --------ccccccccc---ccchHHHhh-------------------------hCCcCCCccCCccchHHHHHHHHHHH
Q 003681 534 --------LMVPAESAS---IPYFDAIML-------------------------HMKSYDSPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 534 --------~~Vpa~~a~---i~~~d~I~~-------------------------~i~~~d~l~~~~Stfs~em~~l~~iL 577 (803)
.++|+.... ....+++.. .++..+......+++|.++++...+.
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 123332111 111122211 11111111223345677777655444
Q ss_pred H-hC---------CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh-Ccc
Q 003681 578 T-AT---------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 578 a-~a---------~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g~tvIivTH~~el~~-l~~ 632 (803)
. .+ .+|+++||||||+|||+.....+. .+++.+.+. |.++|++||+.+... +++
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 3 35 499999999999999999999887 566666554 899999999998763 444
No 221
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.8e-16 Score=165.15 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=86.5
Q ss_pred ccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------hcCcccccccccc---cchHHHh---
Q 003681 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASI---PYFDAIM--- 550 (803)
Q Consensus 499 dVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------q~G~~Vpa~~a~i---~~~d~I~--- 550 (803)
+++| |++++|+||||||||||+|+|+|+.... ....++|+....+ ...+++.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 5666 8999999999999999999999986211 0112333332111 1112221
Q ss_pred ------------------hhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003681 551 ------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 551 ------------------~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L 611 (803)
..++..+........+|.++++... +.+.+.+|+++|||||++|+|+.....+. .+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~-~~l~~~ 175 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQV 175 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 1111111122223456667666544 44458999999999999999999988886 556565
Q ss_pred H-hcCCEEEEEccChhhhh-Ccc
Q 003681 612 D-NIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 612 ~-~~g~tvIivTH~~el~~-l~~ 632 (803)
. +.|.|+|++||+.++.. .++
T Consensus 176 ~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 176 CQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred HHhcCCEEEEEECCHHHHHHhCC
Confidence 4 45899999999998753 444
No 222
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=168.00 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=100.3
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-h---hhcC-------------
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-L---GICG------------- 533 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-l---aq~G------------- 533 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. . ...|
T Consensus 19 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEe----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457888887655 24679999998 89999999999999999999999742 0 0111
Q ss_pred ----------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH
Q 003681 534 ----------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 ----------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~ 575 (803)
.+++++...+ ...+++. ..++.. +........+|.++++...
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 1223322111 1111111 011110 0012234557777776554
Q ss_pred H-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 576 I-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 576 i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+ .+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.+.. .++++
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKE-EYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhc-CCEEEEEEeCHHHHHHhCCE
Confidence 3 4448999999999999999999988886 66666655 68999999999865 34443
No 223
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=171.20 Aligned_cols=157 Identities=11% Similarity=0.066 Sum_probs=101.0
Q ss_pred eEEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------
Q 003681 477 CLKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G------------- 533 (803)
.+.+++++..|-... ....++++++| |++++|+||||||||||+|+|+|+..... .|
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 477788876551100 01358999998 89999999999999999999999872110 01
Q ss_pred -------cccccccc--cc--cchHHH---------------------hhhCCcC-CCccCCccchHHHHHHHHH-HHHh
Q 003681 534 -------LMVPAESA--SI--PYFDAI---------------------MLHMKSY-DSPADGKSSFQVEMSEIRS-IVTA 579 (803)
Q Consensus 534 -------~~Vpa~~a--~i--~~~d~I---------------------~~~i~~~-d~l~~~~Stfs~em~~l~~-iLa~ 579 (803)
.++++... .+ ...+++ +..++.. +......+.+|.++++... +.+.
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 13333210 00 011111 1111221 1122334567778777554 4445
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+|+++||||||+|||+.....+. .+++.+. +.|+++|++||+.+.. .++++.
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 8999999999999999999888886 5666664 4589999999999864 445443
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.68 E-value=1.6e-16 Score=183.56 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=103.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-hcC-------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-ICG------------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-q~G------------------- 533 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 2 l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 2 LEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred EEEEeEEEEe----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 4556666544 24679999998 8999999999999999999999986420 111
Q ss_pred ---cccccccccc---cchHHH-------------------------hhhCCcCCCc-cCCccchHHHHHHHHHHH-HhC
Q 003681 534 ---LMVPAESASI---PYFDAI-------------------------MLHMKSYDSP-ADGKSSFQVEMSEIRSIV-TAT 580 (803)
Q Consensus 534 ---~~Vpa~~a~i---~~~d~I-------------------------~~~i~~~d~l-~~~~Stfs~em~~l~~iL-a~a 580 (803)
.++|+....+ ...+.+ +..++..+.. .....++|.++++...+. +.+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 1333322111 111111 1122222111 123457888888765544 458
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+... ++++.
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~~~~~~~d~i 211 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLNEVKAVCDTI 211 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHHhCCEE
Confidence 999999999999999999988886 677777777999999999988764 44443
No 225
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.68 E-value=1.4e-16 Score=165.82 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=89.3
Q ss_pred eeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---hcC-------------------cccccccc-cc----cc
Q 003681 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---ICG-------------------LMVPAESA-SI----PY 545 (803)
Q Consensus 497 lndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---q~G-------------------~~Vpa~~a-~i----~~ 545 (803)
++|++| |++++|+||||||||||+|+|+|+.... ..| .+++++.. .+ ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 456666 8999999999999999999999987531 111 12232221 01 00
Q ss_pred hHH---------------------HhhhCCcC---CCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 546 FDA---------------------IMLHMKSY---DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 546 ~d~---------------------I~~~i~~~---d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
.+. ++..++.. +........+|.++++... +.+.+.+|+++||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 011 11111121 1122334567777776554 4445899999999999999999988
Q ss_pred HHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 601 TCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 601 ~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
..+. .++..+.+ .|.|+|++||+.+... ++++.
T Consensus 162 ~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 162 ARVL-KLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8886 55666654 5899999999998763 45443
No 226
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=7.8e-17 Score=159.73 Aligned_cols=171 Identities=17% Similarity=0.191 Sum_probs=120.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----------------hhcCccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------GICGLMV 536 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----------------aq~G~~V 536 (803)
.+.++++|+.| +...|++.+|+ |+++.|+|.+|||||||||+|..+... ...|..+
T Consensus 6 ~l~v~dlHK~~----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 6 ALEVEDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ceehhHHHhhc----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46778898887 56789999999 899999999999999999999887622 2334444
Q ss_pred ccccc----------cccchHHHhhhCCcCCCc--------------------------------cCCccchHHHHHHHH
Q 003681 537 PAESA----------SIPYFDAIMLHMKSYDSP--------------------------------ADGKSSFQVEMSEIR 574 (803)
Q Consensus 537 pa~~a----------~i~~~d~I~~~i~~~d~l--------------------------------~~~~Stfs~em~~l~ 574 (803)
|++.. .+++-.+++.+|++.+|+ ......++.+.++..
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 54331 122222344444444433 222334455555544
Q ss_pred HHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCCceee
Q 003681 575 SIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 653 (803)
Q Consensus 575 ~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~~~~~~l~~ 653 (803)
.|. +.+.+|+++|+|||||.|||+-.-.+. .+++.|++.|.|.+++||.+.+++.. ...+.+.|.+...+.|+...
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVL-kv~~~LAeEgrTMv~VTHEM~FAR~V--ss~v~fLh~G~iEE~G~P~q 238 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDV--SSHVIFLHQGKIEEEGPPEQ 238 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHH-HHHHHHHHhCCeEEEEeeehhHHHhh--hhheEEeecceecccCChHH
Confidence 333 338999999999999999999888887 89999999999999999999987643 34556666666555555443
Q ss_pred e
Q 003681 654 T 654 (803)
Q Consensus 654 t 654 (803)
.
T Consensus 239 v 239 (256)
T COG4598 239 V 239 (256)
T ss_pred H
Confidence 3
No 227
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.6e-16 Score=172.39 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=106.4
Q ss_pred cceEEEeccCccccccC-CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-----------
Q 003681 475 ANCLKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----------- 533 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~-~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----------- 533 (803)
...+.+++++..|-... .+..++++++| |++++|+||||||||||+|+|+|+..... .|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34578888876652111 12469999998 89999999999999999999999862210 01
Q ss_pred --------------------ccccccc--ccc--cchHHH---------------------hhhCCcC-CCccCCccchH
Q 003681 534 --------------------LMVPAES--ASI--PYFDAI---------------------MLHMKSY-DSPADGKSSFQ 567 (803)
Q Consensus 534 --------------------~~Vpa~~--a~i--~~~d~I---------------------~~~i~~~-d~l~~~~Stfs 567 (803)
.+++++. ..+ ...+++ ...++.. +........+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 1223321 011 011111 1122221 11223344567
Q ss_pred HHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003681 568 VEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 568 ~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~ 639 (803)
.++++... +.+.+.+|+++||||||+|||+.....+. .++..+.++|.|+|++||+++.+ .++++...+..
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 77766554 34448999999999999999999988887 66666766799999999999865 55554433333
No 228
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.6e-16 Score=165.92 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=97.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.+++|++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 5 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred EEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5666776544 24579999998 8999999999999999999999986421 111
Q ss_pred -------cccccccccc---cchHHHh-----------------------hhCCcC----CCccCCccchHHHHHHHHH-
Q 003681 534 -------LMVPAESASI---PYFDAIM-----------------------LHMKSY----DSPADGKSSFQVEMSEIRS- 575 (803)
Q Consensus 534 -------~~Vpa~~a~i---~~~d~I~-----------------------~~i~~~----d~l~~~~Stfs~em~~l~~- 575 (803)
.+++++...+ ...+++. ..++.. +........+|.++++...
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 1222221111 1111111 011110 0111223445666666444
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. .++++.
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i 218 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKK-EYTIVLVTHSPAQAARVSDYV 218 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhh-CCEEEEEECCHHHHHhhCCEE
Confidence 34448999999999999999999888886 56666654 68999999999875 345443
No 229
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.5e-16 Score=165.76 Aligned_cols=152 Identities=17% Similarity=0.292 Sum_probs=99.4
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--h--hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--G--ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--a--q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... . ..|
T Consensus 12 ~l~i~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 12 VYQINGMNLWY----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred eEEEeeEEEEE----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46778887654 24579999998 899999999999999999999998631 0 112
Q ss_pred --------ccccccccccc--chHHH----------------------hhhCCcCC----CccCCccchHHHHHHHHHHH
Q 003681 534 --------LMVPAESASIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I----------------------~~~i~~~d----~l~~~~Stfs~em~~l~~iL 577 (803)
.++|++...++ ..+++ +..++..+ .+......+|.++++...+.
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 12222211110 11111 11111110 11223345677776655443
Q ss_pred -HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 -TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 -a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.+.. ..+++.
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKE-KYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEEcCHHHHHHhCCEE
Confidence 448999999999999999999888886 66666655 78999999999875 344433
No 230
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.68 E-value=1.9e-16 Score=166.98 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=91.4
Q ss_pred eeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcCcccccccccc---cchH--
Q 003681 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASI---PYFD-- 547 (803)
Q Consensus 496 VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G~~Vpa~~a~i---~~~d-- 547 (803)
++++++| |++++|+||||||||||+|+|+|+.... +...++|+....+ ...+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 6788887 8999999999999999999999986210 0012333322111 1111
Q ss_pred ------------------HHhhhCCcCCCccCCccchHHHHHHHHHHHHh-CC-------CCeEEEEeCCCCCCCHHHHH
Q 003681 548 ------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TT-------SRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 548 ------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-a~-------~psLLLLDEP~sGLD~~~g~ 601 (803)
.++..++..+........+|.++++...+... +. +|+++|||||++|||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 11222222222333445677788776554443 54 67999999999999999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 602 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 602 ~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
.+. .++..+.+.|.|+|++||+.++. .++++
T Consensus 171 ~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 171 ALD-RLLSELCQQGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred HHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 886 67777766789999999999854 44443
No 231
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.2e-16 Score=165.27 Aligned_cols=152 Identities=22% Similarity=0.268 Sum_probs=99.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--hh--hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--la--q~G--------------- 533 (803)
.+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.. .. ..|
T Consensus 4 ~l~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHF----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEe----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 36777776554 24579999998 89999999999999999999999852 10 011
Q ss_pred --------ccccccccccc---chHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHHH
Q 003681 534 --------LMVPAESASIP---YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~---~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~i 576 (803)
.++|++...++ ..+++. ..++... ........+|.++++...+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 12333221111 111111 1111110 1112234567777665544
Q ss_pred H-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 577 V-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 577 L-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
. +.+.+|+++|||||++|+|+.....+. .+++.+.+ +.|+|++||+.+.. +++++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKE-KYTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHh-CCcEEEEECCHHHHHhhCCEE
Confidence 3 448999999999999999999888886 66667765 58999999999875 445443
No 232
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.7e-16 Score=165.36 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=96.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--hhcC------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICG------------------ 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--aq~G------------------ 533 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 3 ~~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 3 AKTTNLNLFY----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred eeeeeeEEEE----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4556665554 24678999998 899999999999999999999997420 0111
Q ss_pred ---ccccccccccc--chHHH-----------------------hhhCCcC----CCccCCccchHHHHHHHHH-HHHhC
Q 003681 534 ---LMVPAESASIP--YFDAI-----------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTAT 580 (803)
Q Consensus 534 ---~~Vpa~~a~i~--~~d~I-----------------------~~~i~~~----d~l~~~~Stfs~em~~l~~-iLa~a 580 (803)
.++|++...++ ..+++ +..++.. +........++.++++... +.+.+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 23333321111 11111 1111221 0112223456777766544 34448
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.++. ..+++
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIE-ELLKELSH-NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHHhhCcE
Confidence 999999999999999999888886 56666654 88999999999865 34443
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=2.1e-16 Score=183.35 Aligned_cols=150 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred EEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-hhhcC--------------------
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICG-------------------- 533 (803)
Q Consensus 479 ~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-laq~G-------------------- 533 (803)
.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.. ....|
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 2 EVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred EEEEEEEEE----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 345555443 24679999998 89999999999999999999999841 00001
Q ss_pred ----------------------------------cccccc-ccccc---chHH---------------------HhhhCC
Q 003681 534 ----------------------------------LMVPAE-SASIP---YFDA---------------------IMLHMK 554 (803)
Q Consensus 534 ----------------------------------~~Vpa~-~a~i~---~~d~---------------------I~~~i~ 554 (803)
.++++. ...++ ..++ ++..++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 122221 11111 1111 112222
Q ss_pred cCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Cc
Q 003681 555 SYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LP 631 (803)
Q Consensus 555 ~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~-l~ 631 (803)
..+......+.+|.++++...+ .+.+.+|+++||||||+|||+.....+. .+++.+ .+.|.|+|++||+.+... ++
T Consensus 158 l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 2222233456778888776554 4458999999999999999999999887 566666 456899999999998764 44
Q ss_pred cc
Q 003681 632 LK 633 (803)
Q Consensus 632 ~~ 633 (803)
++
T Consensus 237 d~ 238 (520)
T TIGR03269 237 DK 238 (520)
T ss_pred CE
Confidence 43
No 234
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.68 E-value=2.4e-16 Score=173.30 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=105.4
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--hcC-----------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--ICG----------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--q~G----------------- 533 (803)
.+.++|++..|....+...+++++|| |++++|+|+||||||||+++|+|+.... ..|
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 46788887665322233579999999 8999999999999999999999987331 011
Q ss_pred --------ccccccc--cccc---chHH----------------------HhhhCCcCC---CccCCccchHHHHHHHHH
Q 003681 534 --------LMVPAES--ASIP---YFDA----------------------IMLHMKSYD---SPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 --------~~Vpa~~--a~i~---~~d~----------------------I~~~i~~~d---~l~~~~Stfs~em~~l~~ 575 (803)
.+++++. ...+ ..++ ++..++..+ .+......+|.+|++...
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM 171 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence 2333332 1111 1111 111122211 012234567888877554
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIK 635 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~~ 635 (803)
+.+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++||+|||++++. ++++..
T Consensus 172 IArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~ 233 (330)
T PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVL 233 (330)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 44558999999999999999999999987 56666654 5899999999998864 455443
No 235
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=182.94 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=99.6
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----------------cccccccccc---c
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----------------LMVPAESASI---P 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----------------~~Vpa~~a~i---~ 544 (803)
++.++++++| |++++|+||||||||||+|+|+|+..... .| .++|++...+ .
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4578999998 89999999999999999999999862110 11 2334332111 1
Q ss_pred chHH------------------------HhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHH
Q 003681 545 YFDA------------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 545 ~~d~------------------------I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~psLLLLDEP~sGLD~~~ 599 (803)
..++ ++..++...........+|.++++...+. +.+.+|+++||||||+|+|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 1111 12222222223334556788887765544 4589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
...+. .+++.+.+.|.++|++||+.++.. ++++...+..+
T Consensus 170 ~~~l~-~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G 210 (491)
T PRK10982 170 VNHLF-TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210 (491)
T ss_pred HHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 88886 667777777999999999998764 44443333333
No 236
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=3.8e-16 Score=159.84 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=97.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.++++...|- .....++++++| |++++|+||||+|||||+|+|+|+.... ..
T Consensus 6 ~l~~~~l~~~~~--~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYA--PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeC--CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 467777765541 112478999998 8999999999999999999999986211 11
Q ss_pred CcccccccccccchHHHhhhCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 533 GLMVPAESASIPYFDAIMLHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 533 G~~Vpa~~a~i~~~d~I~~~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
-.+++++...++. .+...+.... .+......++.++++... +.+.+.+|+++|||||++|+|+...
T Consensus 84 i~~v~q~~~~~~~--tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 84 LTIIPQDPTLFSG--TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred EEEEecCCcccCc--cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 1233333211110 1111110000 012234556776665443 4445899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
..+. .+++.+. .|.|+|++||+.++...++
T Consensus 162 ~~l~-~~l~~~~-~~~tiii~th~~~~~~~~d 191 (207)
T cd03369 162 ALIQ-KTIREEF-TNSTILTIAHRLRTIIDYD 191 (207)
T ss_pred HHHH-HHHHHhc-CCCEEEEEeCCHHHHhhCC
Confidence 8876 5666654 4899999999998865433
No 237
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=165.29 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=97.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 5 l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 5 ISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred EEEEeeEEEE----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5667776554 24579999998 899999999999999999999998631 0111
Q ss_pred -------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...+ ...+++. ..++.. +........+|.++++... +.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 1222221111 1111111 111111 0112233456667666544 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++|||||++|+|+.....+. .+++.+.+ +.|+|++||+.+.. +.+++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKH-QYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHc-CCeEEEEECCHHHHHhhcCEE
Confidence 458999999999999999999888886 66666654 68999999999875 344433
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.67 E-value=3.9e-16 Score=180.28 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=105.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------cC-------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------CG------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------~G------------- 533 (803)
.+.+++++..|.. .+++.++++++| |++++|+||||||||||||+|+|+..... .|
T Consensus 257 ~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVI-NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccc-cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 4778888754311 123568999998 89999999999999999999999863210 01
Q ss_pred ---ccccccc---cccc---c--------------------------hHHHhhhCCcCC-CccCCccchHHHHHHHHHHH
Q 003681 534 ---LMVPAES---ASIP---Y--------------------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 534 ---~~Vpa~~---a~i~---~--------------------------~d~I~~~i~~~d-~l~~~~Stfs~em~~l~~iL 577 (803)
.+++++. ..++ . ...++..++..+ ........+|.++++...+.
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 2233321 0111 0 011222333321 23344567888888766544
Q ss_pred -HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 578 -TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 578 -a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.++.. ++++.
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~v 473 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIY-KLINQLAQEGVAIIVVSSELAEVLGLSDRV 473 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 448899999999999999999888886 677778777999999999998764 44443
No 239
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.8e-16 Score=155.30 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=85.8
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
+.+++++++ |++++|+||||+|||||+++|+|+......-.++......-.........++. ...++.+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~-------~~qlS~G 84 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY-------VPQLSGG 84 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE-------EeeCCHH
Confidence 467888887 79999999999999999999999753221111111110000000011111111 0116777
Q ss_pred HHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 570 MSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 570 m~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+++... +.+.+.+|+++|+|||++|+|+.....+. .++..+.+.+.++|++||+++....
T Consensus 85 ~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 766554 44458899999999999999999988886 5555665557899999999988654
No 240
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.9e-16 Score=180.71 Aligned_cols=146 Identities=9% Similarity=0.075 Sum_probs=102.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------h
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------I 531 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q 531 (803)
.+.+++++..+ + .+++|++| |++++|+||||||||||+|+|+|+.... .
T Consensus 265 ~l~~~~l~~~~-----~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD-----R-KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC-----C-CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 47788887542 1 37999998 8999999999999999999999986210 0
Q ss_pred cCccccccc---ccc---cchH------------------------------HHhhhCCcC-CCccCCccchHHHHHHHH
Q 003681 532 CGLMVPAES---ASI---PYFD------------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 532 ~G~~Vpa~~---a~i---~~~d------------------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~ 574 (803)
.-.++|+.. ..+ ...+ .++..++.. +........+|.++++..
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 112444431 111 1111 122333332 333444567888888766
Q ss_pred HHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 575 SIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 575 ~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+. +.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.++..
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~vsHd~~~~~ 473 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIY-KVMRQLADDGKVILMVSSELPEII 473 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHH
Confidence 544 448999999999999999999988886 677777677999999999988754
No 241
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.7e-16 Score=164.49 Aligned_cols=150 Identities=18% Similarity=0.256 Sum_probs=97.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-h---hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-G---ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-a---q~G---------------- 533 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+... . ..|
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEEEEEEE----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5667776554 24578999998 899999999999999999999997421 0 011
Q ss_pred -------cccccccccc--cchHHHhh----------------------hCCcC----CCccCCccchHHHHHHHHHH-H
Q 003681 534 -------LMVPAESASI--PYFDAIML----------------------HMKSY----DSPADGKSSFQVEMSEIRSI-V 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~~----------------------~i~~~----d~l~~~~Stfs~em~~l~~i-L 577 (803)
.+++++...+ ...+++.. .++.. +........+|.++++...+ .
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 1233322111 11111110 01100 00122334677777765544 4
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. ..+++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIE-ELIQELKK-DYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEEeCHHHHHhhCCE
Confidence 448999999999999999999988886 56666654 78999999999864 34443
No 242
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.9e-16 Score=161.53 Aligned_cols=134 Identities=16% Similarity=0.091 Sum_probs=88.8
Q ss_pred ccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------------cCcccccccccc---cchHH
Q 003681 499 TVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------------CGLMVPAESASI---PYFDA 548 (803)
Q Consensus 499 dVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------------~G~~Vpa~~a~i---~~~d~ 548 (803)
|++| .++++|+||||||||||+|+|+|+..... ...+++++...+ ...++
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 7766 48999999999999999999999862110 011333332111 11111
Q ss_pred -------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 003681 549 -------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 549 -------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~all 608 (803)
++..++..+........+|.++++... +.+.+.+|+++||||||+|+|+.....+. .++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 174 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-PEL 174 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 122223222223344567777776554 44458999999999999999999988886 666
Q ss_pred HHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 609 ETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 609 e~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
..+.+ .|.|+|++||+.+... .+++
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 66654 4899999999998753 4443
No 243
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.9e-16 Score=165.32 Aligned_cols=150 Identities=17% Similarity=0.250 Sum_probs=97.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+.... ..|
T Consensus 5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5667776554 24578999998 8999999999999999999999986320 111
Q ss_pred -------cccccccccc---cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-H
Q 003681 534 -------LMVPAESASI---PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 534 -------~~Vpa~~a~i---~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-i 576 (803)
.++++....+ ...+++. ..++.. +........+|.++++... +
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 1222221111 1111111 111110 1112233456777766544 4
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. +++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQ-DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 4448999999999999999999988886 66666654 68999999999875 34443
No 244
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=167.48 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=97.6
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC--------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG-------------- 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G-------------- 533 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+... ...|
T Consensus 12 ~~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 347788887655 34679999998 899999999999999999999998531 0111
Q ss_pred ---------ccccccccccc--chHHHh--------------------hhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 ---------LMVPAESASIP--YFDAIM--------------------LHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 ---------~~Vpa~~a~i~--~~d~I~--------------------~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|+....++ ..+++. ..++.. +........+|.++++... +.
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 12333221111 111111 111110 0112223456777766544 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+.+|+++||||||+|||+.....+. .+++.+++ +.++|++||+.++..
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~ 217 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKK-NFTIVIVTHNMQQAV 217 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 458999999999999999999988886 66666654 689999999997653
No 245
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.6e-16 Score=163.76 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=96.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||||+|+|+... ...|
T Consensus 4 l~~~~l~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 4 IEIENFSAYY----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred EEEEeeEEEe----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5667776544 24578999998 899999999999999999999997531 0111
Q ss_pred -------cccccccccc--cchHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...+ ...+++. ..++..+ ........+|.++++... +.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 1222221111 1111111 0011100 011223456666666444 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.+.. .++++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tili~sH~~~~~~~~~d~ 214 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSE-NYTIVIVTHNIGQAIRIADY 214 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhc-CcEEEEEeCCHHHHHHhCCE
Confidence 458999999999999999999988886 66666655 68999999999854 44443
No 246
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.9e-16 Score=177.26 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=114.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCcc------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLM------------ 535 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~~------------ 535 (803)
.+.++|+++.| ++..++++++| |++++|+|.||+|||||+|+|+|..... ..|..
T Consensus 8 ll~~~~i~K~F----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 8 LLELRGISKSF----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eeeeecceEEc----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 46788998887 57799999999 8999999999999999999999987211 11111
Q ss_pred ----cccccccccc---hH-------------------------HHhhhCCcCCCccCCccchHHHHHHHHHHHHh-CCC
Q 003681 536 ----VPAESASIPY---FD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTS 582 (803)
Q Consensus 536 ----Vpa~~a~i~~---~d-------------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-a~~ 582 (803)
|.++.+.+|. .. .++.+++...........++...+|+..|.+. ..+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 1222111111 11 23334444323444456667777777766655 678
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCcccccccccce
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYKA 641 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el-~~l~~~~~~v~~~~ 641 (803)
+++|||||||+.|+..+...+. .+++.|+++|.++||+||.++. .+.+++...+..+.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf-~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~ 222 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGR 222 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCE
Confidence 8999999999999999999997 8999999999999999999854 46666654444443
No 247
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=173.99 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=93.4
Q ss_pred ccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------------cccccccccccc---hH
Q 003681 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------------LMVPAESASIPY---FD 547 (803)
Q Consensus 499 dVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------------~~Vpa~~a~i~~---~d 547 (803)
|++| |++++|+||||||||||||+|+|+..... .| .+++++...++. .+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 6666 89999999999999999999999862210 11 123333222211 11
Q ss_pred ---------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003681 548 ---------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 548 ---------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L 611 (803)
.++..++..+........+|.++++... +.+.+.+|+++||||||+|||+.....+. .+++.+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 1222333333334445667888777554 44458999999999999999999988887 555555
Q ss_pred Hh-cCCEEEEEccChhhh-hCcccccccccc
Q 003681 612 DN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 612 ~~-~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
.+ .|.|+|++||+.+.+ .++++...+..+
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 44 489999999999765 445544333333
No 248
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.1e-16 Score=163.63 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=97.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+... ...|
T Consensus 5 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 5 MESKNLNLWY----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEeEEEE----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5667776544 24578999998 899999999999999999999997532 0112
Q ss_pred -------ccccccccccc--chHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|+....++ ..+++. ..++.. +........+|.++++... +.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 12232221111 111111 011110 0112233456777766544 34
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.+.. ..+++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKK-EYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCeEEEEEcCHHHHHHhcCEE
Confidence 458999999999999999999988886 56666655 58999999999875 344443
No 249
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=2.4e-16 Score=162.59 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=92.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------------------------hcCcccccccccc-
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASI- 543 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------------------------q~G~~Vpa~~a~i- 543 (803)
+..++++++| |++++|+|||||||||||++|+|+.... +.-.+++++...+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 4568999988 8999999999999999999999986211 0011233322111
Q ss_pred -cchHHHh--------------hhCCcCCC-----------ccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCC
Q 003681 544 -PYFDAIM--------------LHMKSYDS-----------PADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 544 -~~~d~I~--------------~~i~~~d~-----------l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD 596 (803)
...+++. ..++..+. .......++.++++...+ .+.+.+|+++||||||+|+|
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 1111111 11111000 112235677777765544 44489999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhcCCEEEEEccChhhhhC
Q 003681 597 TAKGTCIAGS-IIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 597 ~~~g~~L~~a-lle~L~~~g~tvIivTH~~el~~l 630 (803)
+.....+... +++.+.+.|.|+|++||+.+....
T Consensus 173 ~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~ 207 (218)
T cd03290 173 IHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH 207 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence 9998888753 777777778999999999987654
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=3.1e-16 Score=180.66 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=100.4
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC------------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG------------------ 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G------------------ 533 (803)
..+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+......|
T Consensus 259 ~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 259 PRIVLNNGVVSY----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred ceEEEeceEEEE----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 347788887655 24579999999 8999999999999999999999964220011
Q ss_pred ----ccccccccccc-----ch-------------------------HHHhhhCCcCC-CccCCccchHHHHHHHHH-HH
Q 003681 534 ----LMVPAESASIP-----YF-------------------------DAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 ----~~Vpa~~a~i~-----~~-------------------------d~I~~~i~~~d-~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++..... .. ..++..++..+ ........+|.++++... +.
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 12222110000 00 01122223222 223334567788877554 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhh
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 629 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g-~tvIivTH~~el~~ 629 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+.+ .++|++||+.++..
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhh
Confidence 458999999999999999999999887 6666666555 57999999998764
No 251
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.5e-16 Score=163.38 Aligned_cols=150 Identities=17% Similarity=0.302 Sum_probs=96.1
Q ss_pred EEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--h--hhcC-----------------
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GICG----------------- 533 (803)
Q Consensus 479 ~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--l--aq~G----------------- 533 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. . ...|
T Consensus 7 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 7 SVKNLNLWY----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EeeeEEEEE----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 345554433 24578999998 89999999999999999999999853 1 0111
Q ss_pred ------ccccccccccc--chHHH-----------------------hhhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 ------LMVPAESASIP--YFDAI-----------------------MLHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 ------~~Vpa~~a~i~--~~d~I-----------------------~~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|++...++ ..+++ +..++..+ ........+|.++++... +.
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 13333321111 11111 11111111 011223456666666444 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+ +.|+|++||+.++.. .+++.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELKK-NFTIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHhhcCEE
Confidence 448999999999999999999888876 66666654 899999999998754 45443
No 252
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=163.40 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=97.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--hh--hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--la--q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. .. ..|
T Consensus 6 l~~~~l~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 6 LQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred EEEEeeEEEE----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5677776554 24578999998 89999999999999999999999732 10 112
Q ss_pred -------cccccccccc--cchHHHhh----------------------hCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAIML----------------------HMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~~----------------------~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|+....+ ...+++.. .++.. +........+|.++++... +.
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 1223322111 11122110 00000 0011223456667666444 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.. ..+++.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHHHHHHhCCEE
Confidence 458999999999999999999988886 66666654 68999999999764 445543
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-16 Score=185.56 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=112.2
Q ss_pred CCcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcC----------
Q 003681 473 DGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG---------- 533 (803)
Q Consensus 473 ~g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G---------- 533 (803)
+.+..+.+++++..|....++..+++|+|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 334457888887665222223579999999 8999999999999999999999986210 001
Q ss_pred -------------------ccccccc--ccc---cchHH----------------------HhhhCCcCC---CccCCcc
Q 003681 534 -------------------LMVPAES--ASI---PYFDA----------------------IMLHMKSYD---SPADGKS 564 (803)
Q Consensus 534 -------------------~~Vpa~~--a~i---~~~d~----------------------I~~~i~~~d---~l~~~~S 564 (803)
.+++++. ... ...++ ++..++..+ .......
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1233321 011 11111 122233321 1234456
Q ss_pred chHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccce
Q 003681 565 SFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 565 tfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~~ 641 (803)
++|.++++... +.+.+.+|+||||||||+|||+.....+. .+++.+.+ .|.++|++||+++++ .++++...+..+.
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 78888887655 44558999999999999999999988886 67777754 589999999999875 4555544444443
Q ss_pred e
Q 003681 642 M 642 (803)
Q Consensus 642 m 642 (803)
+
T Consensus 247 i 247 (623)
T PRK10261 247 A 247 (623)
T ss_pred e
Confidence 3
No 254
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.66 E-value=3.9e-16 Score=173.16 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=93.3
Q ss_pred ccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC-------------------ccccccccccc---chH
Q 003681 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG-------------------LMVPAESASIP---YFD 547 (803)
Q Consensus 499 dVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G-------------------~~Vpa~~a~i~---~~d 547 (803)
+++| |++++|+||||||||||||+|+|+..... .| .+++++...++ ..+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 6766 89999999999999999999999862210 01 12333222111 111
Q ss_pred H-------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Q 003681 548 A-------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSI 607 (803)
Q Consensus 548 ~-------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~al 607 (803)
+ ++..++..+........+|.++++... +.+.+.+|+++||||||+|||+.....+. .+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~-~~ 173 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL-PY 173 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HH
Confidence 1 112222222223334567778777554 44458999999999999999999988887 56
Q ss_pred HHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003681 608 IETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 608 le~L~~-~g~tvIivTH~~el~-~l~~~~~~v~~~~m 642 (803)
++.+.+ .|.|+|++||+.+.+ .++++...+..+.+
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 666654 489999999999875 34554444444433
No 255
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=4.1e-16 Score=167.44 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=98.4
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-------------------hhcCc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGL 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-------------------aq~G~ 534 (803)
|.++++...|. .++..+++|++| |++++|+||||+|||||+++|+|+... .....
T Consensus 3 i~~~nls~~~~--~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYT--EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeC--CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 56677765542 234578999998 899999999999999999999998620 01112
Q ss_pred cccccccccc--chHHH--------------hhhCCcCCCccC-----------CccchHHHHHHHHHH-HHhCCCCeEE
Q 003681 535 MVPAESASIP--YFDAI--------------MLHMKSYDSPAD-----------GKSSFQVEMSEIRSI-VTATTSRSLV 586 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I--------------~~~i~~~d~l~~-----------~~Stfs~em~~l~~i-La~a~~psLL 586 (803)
++|++...++ ..+++ ...++..+.+.. +.+.++.++++...+ .+.+.+|+++
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3444332211 01111 111111111111 112377888775544 4448999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
||||||+|+|+.....+. .++..+. .++|+|++||+++....++
T Consensus 161 llDEpts~LD~~~~~~l~-~~l~~~~-~~~tii~isH~~~~i~~~d 204 (275)
T cd03289 161 LLDEPSAHLDPITYQVIR-KTLKQAF-ADCTVILSEHRIEAMLECQ 204 (275)
T ss_pred EEECccccCCHHHHHHHH-HHHHHhc-CCCEEEEEECCHHHHHhCC
Confidence 999999999999888876 5555553 4899999999998776443
No 256
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=2.6e-16 Score=169.49 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=98.3
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-------Ccccccccccc-
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------GLMVPAESASI- 543 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-------G~~Vpa~~a~i- 543 (803)
..+.++++... ++.++++++| |++++|+||||||||||+|+|+|+...... -.++++.....
T Consensus 38 ~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 38 NNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred CeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 45778887542 3569999998 899999999999999999999998632110 12444432111
Q ss_pred -cchHHHh--------------hhCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCC
Q 003681 544 -PYFDAIM--------------LHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 544 -~~~d~I~--------------~~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD 596 (803)
...+++. ...+..+ .+......+|.++++... +.+.+.+|+++|||||++|+|
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1111111 0111110 011112467777776554 444589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
+.....+...+++.+.+ +.++|++||+.+....+
T Consensus 192 ~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~ 225 (282)
T cd03291 192 VFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKA 225 (282)
T ss_pred HHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhC
Confidence 99888777556666544 78999999999876543
No 257
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.8e-16 Score=162.21 Aligned_cols=151 Identities=19% Similarity=0.274 Sum_probs=98.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--hh--hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--la--q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. .. +.|
T Consensus 6 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 6 ITSSDVHLFY----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred EEEEeEEEEE----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5667776544 24679999998 89999999999999999999999742 10 111
Q ss_pred -------ccccccccccc--chHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...++ ..+++. ..++.. +........+|.++++... +.
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 12333221111 111111 001100 0112233456777766554 34
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+... .+++.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIE-NMLLELRD-QYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHh-CCEEEEEECCHHHHHHhCCEE
Confidence 448999999999999999999988886 66666655 589999999998763 44433
No 258
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.7e-16 Score=163.91 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=99.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC---------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G--------------- 533 (803)
+.+++++..+ +++.+++|++| |++++|+||||||||||+++|+|+..... .|
T Consensus 11 i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 11 FNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred eeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5666666554 45679999998 89999999999999999999999863211 01
Q ss_pred ------ccccccccccc---chHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHHH-H
Q 003681 534 ------LMVPAESASIP---YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRSI-V 577 (803)
Q Consensus 534 ------~~Vpa~~a~i~---~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~i-L 577 (803)
.+++++...++ ..+++. ..++.. +........++.++++...+ .
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 12333222111 111111 111211 01112234567777665544 4
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+ ++|+|++||+.+.. ..+++
T Consensus 167 al~~~P~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIE-KLITELKN-EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CcEEEEEECCHHHHHHhCCE
Confidence 448999999999999999999888886 66666654 68999999999876 44443
No 259
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=8.5e-16 Score=161.79 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=100.3
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 5 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 5 LSAQDVNIYY----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEeeeEEEE----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4566666544 24679999998 8999999999999999999999985321 011
Q ss_pred -------ccccccccccc---chHHHhh--h--------------------CCcC----CCccCCccchHHHHHHHHH-H
Q 003681 534 -------LMVPAESASIP---YFDAIML--H--------------------MKSY----DSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 534 -------~~Vpa~~a~i~---~~d~I~~--~--------------------i~~~----d~l~~~~Stfs~em~~l~~-i 576 (803)
.+++++...++ ..+++.. . ++.. +........+|.++++... +
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 12222221111 1121110 0 0000 0112223456777766544 4
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
.+.+.+|+++|||||++|+|+.....+. .+++.+.+ +.|+|++||+.+... .+++.-.+..+
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 4458999999999999999999888886 56666654 689999999998764 44443333333
No 260
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5.9e-16 Score=161.83 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=91.9
Q ss_pred eeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------cCccccccccccc---chHH--
Q 003681 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CGLMVPAESASIP---YFDA-- 548 (803)
Q Consensus 496 VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------~G~~Vpa~~a~i~---~~d~-- 548 (803)
++++++| |++++|+||||+|||||+++|+|+..... .-.+++++...++ ..++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 7899988 89999999999999999999999862211 1122333221111 1111
Q ss_pred -------------------HhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 003681 549 -------------------IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 549 -------------------I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~all 608 (803)
++..++..+........+|.++++... +.+.+.+|+++|+|||++|+|+.....+. .++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR-EEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH-HHH
Confidence 111222222223334567777766544 44458999999999999999999888886 666
Q ss_pred HHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 609 ETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 609 e~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+.. .|+|+|++||+.++.. .+++
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 66654 4899999999998753 4443
No 261
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6e-16 Score=165.72 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=99.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 20 ~l~~~nl~~~~----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 20 VFEVEGVKVFY----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred eEEEeeEEEEe----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 47778887655 24579999998 8999999999999999999999975310 111
Q ss_pred --------ccccccccccc--chHHHhh--------------------hCCcC----CCccCCccchHHHHHHHHH-HHH
Q 003681 534 --------LMVPAESASIP--YFDAIML--------------------HMKSY----DSPADGKSSFQVEMSEIRS-IVT 578 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~~--------------------~i~~~----d~l~~~~Stfs~em~~l~~-iLa 578 (803)
.+++++...++ ..+++.. .++.. +........++.++++... +.+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 12333321111 1111110 00110 1112233456777766544 444
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~ 632 (803)
.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+... +++
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKE-QYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 58999999999999999999988886 56666655 689999999997763 444
No 262
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.65 E-value=1.9e-16 Score=163.55 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=86.9
Q ss_pred eeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcc-------ccc--ccccc---cchHHHh--hh-----
Q 003681 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-------VPA--ESASI---PYFDAIM--LH----- 552 (803)
Q Consensus 496 VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~-------Vpa--~~a~i---~~~d~I~--~~----- 552 (803)
|++|++| |++++|+||||||||||+|+|+|+.... .|.. ++. ....+ ...+++. ..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 6788888 8999999999999999999999986322 1211 110 11111 1112111 01
Q ss_pred -----------CCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Q 003681 553 -----------MKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 620 (803)
Q Consensus 553 -----------i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIi 620 (803)
++..+........++.++++... +.+.+.+|+++|+|||++++|+.....+...+.+.+++ .++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~ 158 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIV 158 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEE
Confidence 01111112233456777776544 44558999999999999999999988887555555543 57999
Q ss_pred EccChhhhh-Cccc
Q 003681 621 STHLHGIFS-LPLK 633 (803)
Q Consensus 621 vTH~~el~~-l~~~ 633 (803)
+||+++... ++++
T Consensus 159 vsH~~~~~~~~~d~ 172 (213)
T PRK15177 159 LTHNPRLIKEHCHA 172 (213)
T ss_pred EECCHHHHHHhcCe
Confidence 999998764 4443
No 263
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9.8e-16 Score=161.15 Aligned_cols=150 Identities=18% Similarity=0.280 Sum_probs=96.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 4 FNIENLDLFY----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred EEEeccEEEE----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5566776544 24679999998 8999999999999999999999986421 111
Q ss_pred ------ccccccccccc--chHHHhh--h--------------------CCcC----CCccCCccchHHHHHHHHH-HHH
Q 003681 534 ------LMVPAESASIP--YFDAIML--H--------------------MKSY----DSPADGKSSFQVEMSEIRS-IVT 578 (803)
Q Consensus 534 ------~~Vpa~~a~i~--~~d~I~~--~--------------------i~~~----d~l~~~~Stfs~em~~l~~-iLa 578 (803)
.+++++...++ ..+++.. . ++.. +........+|.++++... +.+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 12232221111 1111110 0 0100 0011223456666666544 344
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+... .+++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~~d~ 213 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIE-ELMEELKK-NYTIVIVTHSMQQARRISDR 213 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEecCHHHHHHhCCE
Confidence 48999999999999999999888876 67777765 589999999998754 3443
No 264
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.65 E-value=2.3e-16 Score=203.04 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=114.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G 533 (803)
.+.++++++.|. .+++.+++|++| |++++|+||||||||||+|+|+|+..... .-
T Consensus 1937 ~L~v~nLsK~Y~--~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYS--GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEEC--CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 477888877662 113679999999 89999999999999999999999872211 11
Q ss_pred ccccccccccc---chHH---------------------HhhhCCcCCCccCCccchHHHHHHHH-HHHHhCCCCeEEEE
Q 003681 534 LMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~-~iLa~a~~psLLLL 588 (803)
.++|+..+..+ ..+. ++..++..+.......++|.++++.. .+++.+.+|+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 23444322211 1111 11222222222334467788888754 46666999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEEE
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 645 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m~~~ 645 (803)
||||+|+||..+..+. .+++.+.+.|++||++||++++++ ++++...+..+.+...
T Consensus 2095 DEPTsGLDp~sr~~l~-~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLW-NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred ECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999988885 777777777999999999998774 5555555555555443
No 265
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.7e-16 Score=161.96 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=105.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCcc-------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLM------------- 535 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~------------- 535 (803)
+.++|+...|-.......++|+||| |++++|+|++|||||||.|+|+|+....+ .|..
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 5667776655222112259999999 99999999999999999999999983321 2211
Q ss_pred ---ccccc-ccc-c---ch-------------------HHHhhhCCcCCCc-cCCccchHHHHHH-HHHHHHhCCCCeEE
Q 003681 536 ---VPAES-ASI-P---YF-------------------DAIMLHMKSYDSP-ADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 536 ---Vpa~~-a~i-~---~~-------------------d~I~~~i~~~d~l-~~~~Stfs~em~~-l~~iLa~a~~psLL 586 (803)
|+++. ..+ | .. ..+...++...+. ......+|.+.++ ++.+.|.+.+|+++
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklL 163 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL 163 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEE
Confidence 12211 000 0 00 1122233332222 1223356666555 44445558999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhC-ccccccccccee
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAM 642 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~l-~~~~~~v~~~~m 642 (803)
|+|||||+||+.....+. .++..+ ++.+.|.||+|||..++++ +++...+.++.+
T Consensus 164 IlDEptSaLD~siQa~Il-nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 164 ILDEPTSALDVSVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred EecCchhhhcHHHHHHHH-HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE
Confidence 999999999999988886 566666 5678999999999998764 444433344443
No 266
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.7e-16 Score=162.44 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=96.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 7 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 7 LSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred EEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5666776544 34679999998 8999999999999999999999974210 112
Q ss_pred -------cccccccccc--cchHHHhh----------------------hCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASI--PYFDAIML----------------------HMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I~~----------------------~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...+ ...+++.. .++.. +........+|.++++... +.
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 1222221111 01111100 00100 0011223345666665444 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
+.+.+|+++|||||++|+|+.....+. .+++.+.+ +.++|++||+.+... .+++
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~-~~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIE-DLIEDLKK-EYTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhh-CceEEEEEcCHHHHHhhCCE
Confidence 458999999999999999999988886 66666665 589999999998763 4443
No 267
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.65 E-value=9.8e-16 Score=162.35 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=98.4
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------- 530 (803)
.+.+.++++...|- ..++.++++++| |++++|+|+||+|||||+|+|+|+....
T Consensus 17 ~~~i~~~~l~~~~~--~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 17 GGEIKIHDLCVRYE--NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CceEEEEEEEEEeC--CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 44578888865541 112568999998 8999999999999999999999986211
Q ss_pred hcCcccccccccccc--hHH--------------HhhhCCcC-----------CCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 531 ICGLMVPAESASIPY--FDA--------------IMLHMKSY-----------DSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~a~i~~--~d~--------------I~~~i~~~-----------d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
....++++....++. .++ .....+.. ..+......++.++++... +.+.+.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 011233333211110 000 00000110 0011112356777666444 4445899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
|+++||||||+|+|+.....+. .+++.+. .+.|+|++||+++....++
T Consensus 175 p~llllDEPt~gLD~~~~~~l~-~~l~~~~-~~~tiii~sh~~~~~~~~d 222 (257)
T cd03288 175 SSILIMDEATASIDMATENILQ-KVVMTAF-ADRTVVTIAHRVSTILDAD 222 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHH-HHHHHhc-CCCEEEEEecChHHHHhCC
Confidence 9999999999999999877775 5555554 4899999999999876443
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=3.7e-16 Score=153.63 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=100.4
Q ss_pred CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCc---------------cccccccccc--
Q 003681 491 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGL---------------MVPAESASIP-- 544 (803)
Q Consensus 491 ~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~---------------~Vpa~~a~i~-- 544 (803)
.++..++|++|| |+.++||||+|||||||+|+++.+.-.. ..|- |+.+..+.++
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 356789999999 8999999999999999999999987221 1122 2222111111
Q ss_pred --------c-----------hHHHhhhCCcCCCc-cCCccchHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHHH
Q 003681 545 --------Y-----------FDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCI 603 (803)
Q Consensus 545 --------~-----------~d~I~~~i~~~d~l-~~~~Stfs~em~~l~~iLa~-a~~psLLLLDEP~sGLD~~~g~~L 603 (803)
+ +-.++.+++..+.+ ......+|.+-++...+++. ...|+++||||||+.||+.+...+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 0 01123333333332 22234456666665555554 789999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEccChhh-hhCcccccccc
Q 003681 604 AGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAA 638 (803)
Q Consensus 604 ~~alle~L~~~g~tvIivTH~~el-~~l~~~~~~v~ 638 (803)
-.-+.++..++...++.+||+.+. ...+.+...+.
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence 767777777889999999999887 44444433333
No 269
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.1e-16 Score=166.68 Aligned_cols=149 Identities=19% Similarity=0.290 Sum_probs=99.6
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC-------------
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG------------- 533 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G------------- 533 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 37 ~~~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3347778887654 24679999998 899999999999999999999998531 0111
Q ss_pred ----------ccccccccccc--chHHH--------------------hhhCCcC----CCccCCccchHHHHHHHHH-H
Q 003681 534 ----------LMVPAESASIP--YFDAI--------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 534 ----------~~Vpa~~a~i~--~~d~I--------------------~~~i~~~----d~l~~~~Stfs~em~~l~~-i 576 (803)
.+++++...++ ..+++ +..++.. +........+|.++++... +
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 12333221111 11111 1111111 1122334567777776554 4
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+++.
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~-~~tiii~tH~~~~i~ 243 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIE-DLIEELAE-EYTVVIVTHNMQQAA 243 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 4458999999999999999999888886 66666665 479999999998764
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.65 E-value=3.2e-16 Score=179.70 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=102.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cc--cccccc---ccc
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GL--MVPAES---ASI 543 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~--~Vpa~~---a~i 543 (803)
+.+++++..+- ....+.++++++| |++++|+||||||||||||+|+|+...... |. .++... ..+
T Consensus 22 L~lknL~~~~~-~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l 100 (549)
T PRK13545 22 DKLKDLFFRSK-DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL 100 (549)
T ss_pred eEEEEEEEecC-CCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC
Confidence 55666653331 1112468999998 899999999999999999999998632111 10 000000 001
Q ss_pred cchH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHH
Q 003681 544 PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 544 ~~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~ 601 (803)
...+ .++..++..+........+|.++++... +.+.+.+|+++||||||+|||+....
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~ 180 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTK 180 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 1111 1222233333344455678888877554 44558999999999999999999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 602 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 602 ~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
.+. .++..+.+.|.++|++||+++... ++++.
T Consensus 181 ~Ll-elL~el~~~G~TIIIVSHdl~~i~~l~DrI 213 (549)
T PRK13545 181 KCL-DKMNEFKEQGKTIFFISHSLSQVKSFCTKA 213 (549)
T ss_pred HHH-HHHHHHHhCCCEEEEEECCHHHHHHhCCEE
Confidence 886 666667777899999999998763 44443
No 271
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9.5e-16 Score=161.59 Aligned_cols=146 Identities=19% Similarity=0.315 Sum_probs=96.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----cC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----CG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .|
T Consensus 5 l~~~~l~~~~----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 5 IKIRGVNFFY----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred EEEEEEEEEE----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5667776554 24579999998 89999999999999999999999864321 12
Q ss_pred -------ccccccccccc--chHHHhh----------------------hCCcC----CCccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASIP--YFDAIML----------------------HMKSY----DSPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~~----------------------~i~~~----d~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...++ ..+++.. .++.. +........+|.++++... +.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 12222211111 1111100 01100 0112233456667666544 34
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+. .+.|+|++||+.+...
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~-~~~tilivsh~~~~~~ 210 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELK-QNYTIAIVTHNMQQAA 210 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHH
Confidence 448999999999999999999988886 5666665 4799999999998764
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=5.5e-16 Score=180.35 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=106.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..|-...+++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 36777777655211113579999999 8999999999999999999999987420 011
Q ss_pred ----------cccccccc--ccc---chHH----------------------HhhhCCcCC---CccCCccchHHHHHHH
Q 003681 534 ----------LMVPAESA--SIP---YFDA----------------------IMLHMKSYD---SPADGKSSFQVEMSEI 573 (803)
Q Consensus 534 ----------~~Vpa~~a--~i~---~~d~----------------------I~~~i~~~d---~l~~~~Stfs~em~~l 573 (803)
.+++++.. ..+ ..+. ++..++..+ ........+|.++++.
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 12333211 000 0011 111122211 0123345677887775
Q ss_pred HHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccce
Q 003681 574 RSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 574 ~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
..+ .+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.+. ++++...+..++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 554 4458999999999999999999998887 66666755 4899999999998764 455443333333
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.65 E-value=7.2e-16 Score=178.68 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=100.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------h
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------I 531 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q 531 (803)
.+.+++++. .++++++| |++++|+||||||||||+|+|+|+.... .
T Consensus 268 ~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 467777752 15788888 8999999999999999999999985210 0
Q ss_pred cCccccccc---ccc---cchH------------------------HHhhhCCcC-CCccCCccchHHHHHHHHHHH-Hh
Q 003681 532 CGLMVPAES---ASI---PYFD------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIV-TA 579 (803)
Q Consensus 532 ~G~~Vpa~~---a~i---~~~d------------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~iL-a~ 579 (803)
.-.|+|++. ..+ ...+ .++..++.. +........+|.++++...+. +.
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 112444431 011 1111 122233332 233444567888888766544 45
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.++..
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tiIivsHd~~~i~ 467 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSDLEEIE 467 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHH
Confidence 8999999999999999999988886 677777777999999999998764
No 274
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9.6e-16 Score=163.84 Aligned_cols=152 Identities=15% Similarity=0.232 Sum_probs=98.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+|+||||||||+|+|+|+... ...|
T Consensus 24 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 24 VFDTQNLNLWY----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred EEEEeeeEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 47788887654 24568999998 899999999999999999999998631 1111
Q ss_pred --------cccccccccc--cchHHHhh--hC-CcC-----------------------CCccCCccchHHHHHHHHHH-
Q 003681 534 --------LMVPAESASI--PYFDAIML--HM-KSY-----------------------DSPADGKSSFQVEMSEIRSI- 576 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I~~--~i-~~~-----------------------d~l~~~~Stfs~em~~l~~i- 576 (803)
.+++++...+ ...+++.. .. +.. +........+|.++++...+
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 1222221111 11122110 00 000 00112234566676665443
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
.+.+.+|+++||||||+|+|+.....+. .++..+.+ +.++|++||+.+.. ..+++.
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKK-DYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHc-CCEEEEEEcCHHHHHHhCCEE
Confidence 3448999999999999999999988887 56666665 68999999999875 344443
No 275
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=7.3e-16 Score=163.76 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=92.2
Q ss_pred ceeeeccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------hcCccc-----------------c
Q 003681 494 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMV-----------------P 537 (803)
Q Consensus 494 ~~VlndVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------q~G~~V-----------------p 537 (803)
+.+++++++ |++++|+||||||||||||+|+|+.... ..|..+ +
T Consensus 14 ~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 14 SFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred chhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 357777777 8999999999999999999999987321 111111 1
Q ss_pred ccccccc------------------chHHHhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHH
Q 003681 538 AESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 538 a~~a~i~------------------~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~ 598 (803)
+.....+ ....++..++..+........++.++++...+ .+.+.+|+++|+|||++|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 1000000 00112233343333344455677777765544 4448999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 599 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 599 ~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
....+. .+++.+.+.++++|++||+++...
T Consensus 174 ~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~ 203 (255)
T cd03236 174 QRLNAA-RLIRELAEDDNYVLVVEHDLAVLD 203 (255)
T ss_pred HHHHHH-HHHHHHHhcCCEEEEEECCHHHHH
Confidence 988886 666777767899999999998765
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=176.06 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=103.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC--------------- 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~--------------- 532 (803)
.+.+++++.. .+.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 250 ~i~~~~l~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 250 ILEVRNLTSL------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EEEEeCcccc------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4777887643 2358999998 8999999999999999999999986210 00
Q ss_pred -Ccccccccc---ccc---ch---------------------------HHHhhhCCcC-CCccCCccchHHHHHHHHHH-
Q 003681 533 -GLMVPAESA---SIP---YF---------------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSI- 576 (803)
Q Consensus 533 -G~~Vpa~~a---~i~---~~---------------------------d~I~~~i~~~-d~l~~~~Stfs~em~~l~~i- 576 (803)
-.++|+... .++ .. ..++..++.. +........+|.++++...+
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 123333211 000 00 0111222222 23344556788888876554
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~ 633 (803)
.+.+.+|+++||||||+|+|+.....+. .+++.+.+.|.|+|++||+.++.. ++++
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~-~~l~~l~~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIY-QLIAELAKKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHH-HHHHHHHHCCCEEEEECCChHHHHhhCCE
Confidence 4458999999999999999999999886 677777778999999999998764 4443
No 277
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.64 E-value=1.1e-15 Score=158.81 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------hcCccccccccc-----ccchHHH-------------
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS-----IPYFDAI------------- 549 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------q~G~~Vpa~~a~-----i~~~d~I------------- 549 (803)
|++++|+||||||||||+|+|+|+.... +.-.++|++... ....+.+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 7999999999999999999999986221 112234443211 1111111
Q ss_pred ------------hhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003681 550 ------------MLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 616 (803)
Q Consensus 550 ------------~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~ 616 (803)
+..++..+........+|.++++...+ .+.+.+|+++|+||||+|+|+.....+. .+++.+.+.|.
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 164 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT-ELFIELAGAGT 164 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCC
Confidence 122222222223345677777775544 4458999999999999999999999887 56666766789
Q ss_pred EEEEEccChhhh-hCcc
Q 003681 617 LGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 617 tvIivTH~~el~-~l~~ 632 (803)
|+|++||+.+.. ..++
T Consensus 165 tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 165 AILMTTHDLAQAMATCD 181 (223)
T ss_pred EEEEEeCCHHHHHHhCC
Confidence 999999999865 3444
No 278
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=163.65 Aligned_cols=152 Identities=19% Similarity=0.275 Sum_probs=99.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.+++|++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 21 ~l~i~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 21 AMAAVNLTLGF----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred EEEEeeEEEEE----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35777887655 35689999998 8999999999999999999999985420 111
Q ss_pred -------ccccccccccc--chHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.+++++...++ ..+++. ..++... .+......+|.++++... +.
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 13333221111 111111 1111110 011223456777766544 44
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.++. +++++.
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLAD-RLTVIIVTHNLAQAARISDRA 232 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 448999999999999999999888886 56666665 58999999999875 344433
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.64 E-value=1.2e-15 Score=176.99 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=102.7
Q ss_pred eEEEeccCcccccc-CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc-C------------
Q 003681 477 CLKMNGLSPYWFDA-AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC-G------------ 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~-~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~-G------------ 533 (803)
.+.+++++..|... .+++.++++++| |++++|+||||||||||+|+|+|+.... .. |
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 47778887655211 123579999998 8999999999999999999999986211 00 1
Q ss_pred ---------ccccccccccc---chHH--------------------HhhhCCcCC-----CccCCccchHHHHHHHHHH
Q 003681 534 ---------LMVPAESASIP---YFDA--------------------IMLHMKSYD-----SPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 534 ---------~~Vpa~~a~i~---~~d~--------------------I~~~i~~~d-----~l~~~~Stfs~em~~l~~i 576 (803)
.++|++...++ ..+. ++..++..+ ........+|.++++...+
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 23333321111 1111 122233321 1234456778888776554
Q ss_pred -HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh
Q 003681 577 -VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 -La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~ 629 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+. +.|.++|++||+.+++.
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~ 492 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVL 492 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 4558999999999999999999999887 5666665 45899999999998764
No 280
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6.9e-16 Score=179.56 Aligned_cols=144 Identities=10% Similarity=0.135 Sum_probs=96.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccccc-
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASI- 543 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a~i- 543 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+..... .-.++++.....
T Consensus 2 l~i~~ls~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 2 LSTANITMQF----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred EEEEEEEEEe----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 4556666544 34679999998 89999999999999999999999863211 012333332111
Q ss_pred --cch-----------------------------------------------------HHHhhhCCcCCCc-cCCccchH
Q 003681 544 --PYF-----------------------------------------------------DAIMLHMKSYDSP-ADGKSSFQ 567 (803)
Q Consensus 544 --~~~-----------------------------------------------------d~I~~~i~~~d~l-~~~~Stfs 567 (803)
... ..++..++..+.. .....++|
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 000 0122223332211 12346788
Q ss_pred HHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 568 VEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 568 ~em~~l~~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.++++...+. +.+.+|+++||||||+|||+.....+. .++ .+.|.|||++||+.++..
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLE-DVL---NERNSTMIIISHDRHFLN 216 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHH---HhCCCeEEEEeCCHHHHH
Confidence 8888766544 448999999999999999999887775 333 346899999999998754
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=176.67 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=99.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hc---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC--------------- 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~--------------- 532 (803)
.+.+++++. +.+++++|| |++++|+||||||||||+|+|+|+.... ..
T Consensus 257 ~l~~~~~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 257 RLRLDGLKG--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred EEEEecccc--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 356666641 247899998 8999999999999999999999986210 00
Q ss_pred -Ccccccccc---cc---cchH---------------------------HHhhhCCcC-CCccCCccchHHHHHHHHHHH
Q 003681 533 -GLMVPAESA---SI---PYFD---------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 533 -G~~Vpa~~a---~i---~~~d---------------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~iL 577 (803)
-.++|+... .+ ...+ .++..++.. +........+|.++++...+.
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG 408 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH
Confidence 113333210 11 0111 122233331 233444567888888765544
Q ss_pred -HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 578 -TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 578 -a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+.+|+|+||||||+|+|+.....+. .+++.+.+.|.++|++|||.++..
T Consensus 409 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~ 460 (501)
T PRK11288 409 RWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLPEVL 460 (501)
T ss_pred HHHccCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHH
Confidence 448999999999999999999999986 677777778999999999998764
No 282
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.64 E-value=5.6e-16 Score=199.61 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=113.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------------------hcC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------q~G 533 (803)
.+.++++++.|. .+++.++++++| |++++|+||||||||||||+|+|+.... +.-
T Consensus 928 ~L~I~nLsK~y~--~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFE--PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEec--CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 366777766551 135689999998 8999999999999999999999987211 111
Q ss_pred ccccccccccc---chH---------------------HHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEE
Q 003681 534 LMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d---------------------~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLL 588 (803)
.++|+....++ ..+ .++..++..+......+++|.++++... +++.+.+|+++||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 23444322111 111 1233334333334445678888887554 5566999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEE
Q 003681 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGT 644 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m~~ 644 (803)
||||+|+|+..+..+. .+++.++ .|.+||++||++++++ ++++...+..+.+..
T Consensus 1086 DEPTSGLDp~sr~~l~-~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIW-DLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred ECCCcCCCHHHHHHHH-HHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999988886 6777775 5899999999998875 566555555555443
No 283
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=165.69 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=97.5
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC--------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG-------------- 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G-------------- 533 (803)
..+.+++++..| +++.++++++| |++++|+|||||||||||++|+|+... ...|
T Consensus 44 ~~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 357788887554 24679999998 899999999999999999999998531 0111
Q ss_pred ---------cccccccccc--cchHHHhhh----------------------------------CCcC----CCccCCcc
Q 003681 534 ---------LMVPAESASI--PYFDAIMLH----------------------------------MKSY----DSPADGKS 564 (803)
Q Consensus 534 ---------~~Vpa~~a~i--~~~d~I~~~----------------------------------i~~~----d~l~~~~S 564 (803)
.++++....+ ...+++... ++.. +.......
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1333322111 111111100 0000 01112234
Q ss_pred chHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 565 SFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 565 tfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+|.++++... +.+.+.+|+++|||||++|||+.....+. .+++.+.+ +.++|++||+.+...
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~-~~tiiivtH~~~~i~ 263 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE-DLIEELAE-EYTVVVVTHNMQQAA 263 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEEcCHHHHH
Confidence 56677766544 44458999999999999999999888886 66666665 489999999998753
No 284
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=161.34 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=98.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 16 ~l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 16 KSEVNKLNFYY----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred eEEEEEEEEEE----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 47788887655 24579999998 8999999999999999999999975310 111
Q ss_pred ----------ccccccccccc--chHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH
Q 003681 534 ----------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 ----------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~ 575 (803)
.+++++...++ ..+++. ..++.. +........+|.++++...
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 12232211111 111111 001110 0011223456666666444
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~ 634 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+... ++++.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~-~~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIE-ELISDLKN-KVTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHh-CCEEEEEecCHHHHHHhCCEE
Confidence 34448999999999999999999888886 66666665 689999999998763 44433
No 285
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=161.92 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=99.8
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC-------------
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG------------- 533 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G------------- 533 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 23 ~~~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFY----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEE----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3457888887655 24579999998 899999999999999999999998531 0111
Q ss_pred ----------ccccccccccc--chHHHhh----------------------hCCcCC----CccCCccchHHHHHHHHH
Q 003681 534 ----------LMVPAESASIP--YFDAIML----------------------HMKSYD----SPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 ----------~~Vpa~~a~i~--~~d~I~~----------------------~i~~~d----~l~~~~Stfs~em~~l~~ 575 (803)
.+++++...++ ..+++.. .++..+ ........+|.++++...
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 12232221111 1112110 001100 011122345666665444
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~ 634 (803)
+.+.+.+|+++||||||+|+|+.....+. .++..+.+ +.++|++||+.+.. ..+++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~-~~tiiivtH~~~~~~~~~d~i 237 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKS-KYTIVIVTHNMQQAARVSDYT 237 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCeEEEEeCCHHHHHhhCCEE
Confidence 44458999999999999999999888876 66666665 68999999999875 345443
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=9.3e-16 Score=180.48 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=103.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------cCcccccccccc--
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASI-- 543 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------~G~~Vpa~~a~i-- 543 (803)
.+.+++++..| +...++++++ |++++|+||||||||||+|+|+|+..... .-.++|+.....
T Consensus 340 ~l~~~~ls~~~-----~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 340 LVEYPDLTKKL-----GDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred EEEEcceEEEE-----CCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 46777877544 1245788777 89999999999999999999999863211 122445442211
Q ss_pred -cch----------------HHHhhhCCcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 544 -PYF----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 544 -~~~----------------d~I~~~i~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
... ..++..++..+.......++|.++++... +.+.+.+|+++||||||+|||+.....+.
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~- 493 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA- 493 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-
Confidence 111 12333444444445556778888877554 44458999999999999999999999887
Q ss_pred HHHHHHHh-cCCEEEEEccChhhhh
Q 003681 606 SIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 606 alle~L~~-~g~tvIivTH~~el~~ 629 (803)
.+++.+.+ .|.++|++|||.+++.
T Consensus 494 ~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 494 KAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 66666644 5899999999998764
No 287
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=161.51 Aligned_cols=147 Identities=20% Similarity=0.287 Sum_probs=95.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----hhcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+... ...|
T Consensus 10 ~l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EEEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 36777887654 24578999998 899999999999999999999997531 0112
Q ss_pred --------ccccccccccc--chHHHhh--------------------hCCcC----CCccCCccchHHHHHHHHH-HHH
Q 003681 534 --------LMVPAESASIP--YFDAIML--------------------HMKSY----DSPADGKSSFQVEMSEIRS-IVT 578 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~~--------------------~i~~~----d~l~~~~Stfs~em~~l~~-iLa 578 (803)
.+++++...++ ..+++.. .++.. +........+|.++++... +.+
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 11222211111 1111110 00100 0011123346666666444 444
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+.+|+++|||||++|+|+.....+. .++..+.+ +.++|++||+.+...
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIE-ELMHELKE-QYTIIIVTHNMQQAA 214 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHH
Confidence 48999999999999999999988886 66666665 589999999987653
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.63 E-value=1.4e-15 Score=176.87 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=103.4
Q ss_pred eEEEeccCccccccC-------CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh------h----------
Q 003681 477 CLKMNGLSPYWFDAA-------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------L---------- 529 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~-------~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~------l---------- 529 (803)
.+.+++++..|.... +++.+++++|| |++++|+||||||||||+|+|+|+.. +
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 367778776542110 13579999998 89999999999999999999999861 0
Q ss_pred ------hhcCcccccccc--cc---cchHHH-----------------------hhhCCcC-CCccCCccchHHHHHHHH
Q 003681 530 ------GICGLMVPAESA--SI---PYFDAI-----------------------MLHMKSY-DSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 530 ------aq~G~~Vpa~~a--~i---~~~d~I-----------------------~~~i~~~-d~l~~~~Stfs~em~~l~ 574 (803)
...-.++++... .+ ...+.+ +..++.. +........+|.++++..
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 000123333320 11 111111 1222222 112333456788887755
Q ss_pred HH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003681 575 SI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 575 ~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~~ 634 (803)
.+ .+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+++. ++++.
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 54 4458999999999999999999999887 66666654 4899999999998764 44433
No 289
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=160.61 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=96.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+|+||||||||+|+|+|+.... ..|
T Consensus 7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 7 AIKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred eEEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46777776554 24578999998 8999999999999999999999975421 112
Q ss_pred --------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHH-H
Q 003681 534 --------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRS-I 576 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~-i 576 (803)
.+++++...+ ...+++. ..++.. +........+|.++++... +
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 1122221111 1111111 011110 0111223456677666444 4
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+++...
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~i~ 213 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRS-ELTIAIVTHNMQQAT 213 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 4458999999999999999999888886 66666655 589999999998764
No 290
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.63 E-value=1.8e-15 Score=149.31 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=113.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
.|++.++++......+.-.|++++++ |+.++|+||+||||||||-.++|+....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 45666666655455566789999998 8999999999999999999999986211
Q ss_pred --hcCcccccccccccch------------------------HHHhhhCCcCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003681 531 --ICGLMVPAESASIPYF------------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 531 --q~G~~Vpa~~a~i~~~------------------------d~I~~~i~~~d~l~~~~Stfs~em~~-l~~iLa~a~~p 583 (803)
..-.+|.+....+|.+ ..++..+|..+.+......++.+-+| .+.+.+.+..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 0111222222111111 12333444444444444455555444 33344458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~ 641 (803)
++++.||||-+||...+..++..+.....+.|.|.+++|||..++..+.+.-.+..++
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 9999999999999999999996666666889999999999999988776655544443
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=174.88 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=99.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------------h
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------I 531 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------q 531 (803)
.+.+++++. .++++++| |++++|+||||||||||||+|+|+.... +
T Consensus 257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 466777652 36888888 8999999999999999999999986211 0
Q ss_pred cCcccccccc---cc---cchH---------------------------HHhhhCCcC-CCccCCccchHHHHHHHHHH-
Q 003681 532 CGLMVPAESA---SI---PYFD---------------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRSI- 576 (803)
Q Consensus 532 ~G~~Vpa~~a---~i---~~~d---------------------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~i- 576 (803)
.-.++|++.. .+ ...+ .++..++.. +........+|.++++...+
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 1123444320 00 1111 122233332 22334456778888876554
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||++++..
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~ 459 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVL 459 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHH
Confidence 4458999999999999999999998886 677777767999999999998764
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=181.41 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=96.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----ccccccc----
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAES---- 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----~~Vpa~~---- 540 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+..... .| .++++..
T Consensus 2 i~i~nls~~~----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 2 IVFSSLQIRR----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred EEEEEEEEEe----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 4566776555 45789999998 89999999999999999999999762211 11 1122210
Q ss_pred -c---cccc------------------------------------------hHHHhhhCCcC-CCccCCccchHHHHHHH
Q 003681 541 -A---SIPY------------------------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEI 573 (803)
Q Consensus 541 -a---~i~~------------------------------------------~d~I~~~i~~~-d~l~~~~Stfs~em~~l 573 (803)
. .+.. ...++..++.. +......+++|.++++.
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 0 0000 00112223332 22344567788998876
Q ss_pred HHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 574 RSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 574 ~~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
..+. +.+.+|+++||||||+|||+.....+. .+ +.+.+.++|++|||.++..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~-~~---L~~~~~tviivsHd~~~l~ 210 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLE-KW---LKSYQGTLILISHDRDFLD 210 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHH-HH---HHhCCCeEEEEeCCHHHHH
Confidence 6544 448999999999999999998876654 33 3444679999999998764
No 293
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=160.15 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=98.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC---------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| ++..+++|++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 7 ~l~~~nl~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 7 AIKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred eEEEeeEEEEe----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46777776554 23468999998 8999999999999999999999986431 112
Q ss_pred --------ccccccccccc--chHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHHH-
Q 003681 534 --------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRSI- 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~i- 576 (803)
.+++++...++ ..+++. ..++..+ ........+|.++++...+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 11122211111 111111 0111100 0112234567777665543
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccc
Q 003681 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~-l~~~ 633 (803)
.+.+.+|+++||||||+|+|+.....+. .++..+. +.|.|+|++||++++.. ++++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 4448999999999999999999888886 5555554 45899999999998754 4443
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=178.67 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=104.8
Q ss_pred eEEEeccCccccccC-------CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh---------------
Q 003681 477 CLKMNGLSPYWFDAA-------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~-------~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------- 530 (803)
.+.+++++..|.... ++..+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 477788876552100 12468999999 8999999999999999999999986210
Q ss_pred --------hcCccccccc--cccc---chHH----------------------HhhhCCcC-CCccCCccchHHHHHHHH
Q 003681 531 --------ICGLMVPAES--ASIP---YFDA----------------------IMLHMKSY-DSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 531 --------q~G~~Vpa~~--a~i~---~~d~----------------------I~~~i~~~-d~l~~~~Stfs~em~~l~ 574 (803)
..-.+++++. ...+ ..+. ++..++.. +........+|.++++..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 0112344432 1111 1111 12222332 122334567788888765
Q ss_pred HH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003681 575 SI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 575 ~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~-l~~~ 633 (803)
.+ .+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++||+|||++++. ++++
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 54 4458999999999999999999999987 66666654 5899999999998764 3443
No 295
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=167.88 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=116.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccc----ccc----
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV----PAE---- 539 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~V----pa~---- 539 (803)
.+.++++++.| ++..+.++||| |++.+|+|.||+||||||+++.|+..... .|..+ |.+
T Consensus 4 ~l~~~~itK~f----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 4 ALEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred eEEEeccEEEc----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 46778888876 36778889998 89999999999999999999999873321 12211 110
Q ss_pred -cccccchHHHhhhCCcCCCcc----------------------------------CCccchHHHHHHHHHHHHh-CCCC
Q 003681 540 -SASIPYFDAIMLHMKSYDSPA----------------------------------DGKSSFQVEMSEIRSIVTA-TTSR 583 (803)
Q Consensus 540 -~a~i~~~d~I~~~i~~~d~l~----------------------------------~~~Stfs~em~~l~~iLa~-a~~p 583 (803)
.+.+.|...++..+++.+|+. ...+..+.+++|...|+.. ..++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 012222223333444444433 3334556678887778876 7999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~~m~ 643 (803)
++|||||||+-|.|.+...++ .+++.+++.|++|||+||-+++. +.+++...+..+++.
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf-~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999998 88899999999999999998654 556665555555443
No 296
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-15 Score=154.02 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=103.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH----------------------hhh
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------LLG 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~----------------------~la 530 (803)
.++++|+|-.. .+.+.|++++|+ |++.+|.||||||||||.++|+|.- --|
T Consensus 3 ~L~I~dLhv~v---~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 3 MLEIKDLHVEV---EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred eeEEeeeEEEe---cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 46677776443 222599999999 8999999999999999999999964 124
Q ss_pred hcCcccc-cccccccc---hHH------------------------HhhhCCcCCC-ccCC-ccchHHHHHHHHHHHHh-
Q 003681 531 ICGLMVP-AESASIPY---FDA------------------------IMLHMKSYDS-PADG-KSSFQVEMSEIRSIVTA- 579 (803)
Q Consensus 531 q~G~~Vp-a~~a~i~~---~d~------------------------I~~~i~~~d~-l~~~-~Stfs~em~~l~~iLa~- 579 (803)
..|.|+. +....++- .+- ....++..+. +... ---||.+-++...++..
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 4555441 11121211 110 1111111110 0111 12467777777777776
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
+.+|++.|||||-||+|...-..+ ...++.+++.|..++++||+.++.++.
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V-~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIV-AEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHH-HHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 799999999999999999655555 588889999999999999999998764
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.62 E-value=4.9e-16 Score=181.91 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=98.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccccc-
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASI- 543 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a~i- 543 (803)
+.+++++..| .+++.+++|+|| |++++|+||||||||||||+|+|+..... .-.++|++....
T Consensus 7 l~i~~l~~~y---~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 7 YTMNRVSKVV---PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEeeEEEEe---CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5677776555 224789999998 89999999999999999999999863211 112455543221
Q ss_pred --cchHHHh---------------------------------------------------------hhCCcCCCccCCcc
Q 003681 544 --PYFDAIM---------------------------------------------------------LHMKSYDSPADGKS 564 (803)
Q Consensus 544 --~~~d~I~---------------------------------------------------------~~i~~~d~l~~~~S 564 (803)
...+.+. ..++.. ......+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 162 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVT 162 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchh
Confidence 1112111 011111 1233456
Q ss_pred chHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 565 SFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 565 tfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+|.++++...+ .+.+.+|+++||||||+|||+.....+. .+++.+ +.|+|++||+.++..
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiisHd~~~~~ 224 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY---PGTVVAVTHDRYFLD 224 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC---CCeEEEEeCCHHHHH
Confidence 788888776554 4458999999999999999999877775 444443 459999999998765
No 298
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=159.65 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=95.9
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 9 ~~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 9 MDCKLDKIFY----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred EEEEeEEEEe----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4555554443 35679999998 8999999999999999999999986320 111
Q ss_pred -------cccccccccc--cchHHH--------------------hhhCCcCCC----ccCCccchHHHHHHHHH-HHHh
Q 003681 534 -------LMVPAESASI--PYFDAI--------------------MLHMKSYDS----PADGKSSFQVEMSEIRS-IVTA 579 (803)
Q Consensus 534 -------~~Vpa~~a~i--~~~d~I--------------------~~~i~~~d~----l~~~~Stfs~em~~l~~-iLa~ 579 (803)
.+++++...+ ...+++ +...+.... .......++.++++... +.+.
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1222221111 111111 111111110 11122456777766544 4445
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~ 632 (803)
+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+++.. ++++
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~-~~l~~~~~-~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVE-ELMVELKK-DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence 8999999999999999999988886 66666654 78999999999865 3444
No 299
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.4e-15 Score=158.33 Aligned_cols=147 Identities=21% Similarity=0.321 Sum_probs=94.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--h--hhcC----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--l--aq~G---------------- 533 (803)
+.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.. . ...|
T Consensus 4 l~~~~v~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 4 IEVENLNTYF----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEeEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4566665444 24579999998 89999999999999999999999742 1 0112
Q ss_pred -------ccccccccccc--chHHHh----------------------hhCCcCC----CccCCccchHHHHHHHHH-HH
Q 003681 534 -------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSEIRS-IV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~----------------------~~i~~~d----~l~~~~Stfs~em~~l~~-iL 577 (803)
.++|++...++ ..+++. ..++..+ ........+|.++++... +.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 12232221111 111111 0001000 011223445666665444 34
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+.+.+|+++|||||++|+|+.....+. .++..+.+ +.++|++||+.+....
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIE-DLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEECCHHHHHh
Confidence 448999999999999999999888886 66666654 7899999999987643
No 300
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.8e-15 Score=152.01 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=101.2
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccc--c-cccccccchHHHhhhCCcCCC---
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV--P-AESASIPYFDAIMLHMKSYDS--- 558 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~V--p-a~~a~i~~~d~I~~~i~~~d~--- 558 (803)
..++.|+|+ |+.++++||+||||||||+.++|++...+ .|..+ | ++.+.+++-+.++..++..||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 458999998 89999999999999999999999984432 12222 1 122333333333333333333
Q ss_pred ----------------------------ccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003681 559 ----------------------------PADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 559 ----------------------------l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP~sGLD~~~g~~L~~alle 609 (803)
-....-.+|.+|+|..-+.. .+.+|++++||||+..+|...+..+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 33334456788888765443 4899999999999999999999999888888
Q ss_pred HHHhcCCEEEEEccChhhhhC
Q 003681 610 TLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 610 ~L~~~g~tvIivTH~~el~~l 630 (803)
...+.|+.++++||+.+++-+
T Consensus 178 lw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHh
Confidence 889999999999999998754
No 301
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=7.8e-16 Score=180.03 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=96.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccccc-
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASI- 543 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a~i- 543 (803)
+.+++++..| .+++.+++|+|| |++++|+||||||||||||+|+|+..... .-.++++.....
T Consensus 5 i~~~nls~~~---~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 5 YTMNRVSKVV---PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEeeEEEec---CCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5667776655 224679999998 89999999999999999999999863211 112445443211
Q ss_pred --cchHHHhh---------------------------------------------------------hCCcCCCccCCcc
Q 003681 544 --PYFDAIML---------------------------------------------------------HMKSYDSPADGKS 564 (803)
Q Consensus 544 --~~~d~I~~---------------------------------------------------------~i~~~d~l~~~~S 564 (803)
...+.+.. .++.. ......+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 160 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVT 160 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchh
Confidence 11111110 00110 1223456
Q ss_pred chHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 565 SFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 565 tfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+|.++++...+ .+.+.+|+++||||||++||+.....+. .++.. .+.++|++||+.++..
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L~~---~~~tvIiisHd~~~~~ 222 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE-QHLQE---YPGTVVAVTHDRYFLD 222 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHH-HHHHh---CCCeEEEEeCCHHHHH
Confidence 788888876554 4458999999999999999999887775 44433 3469999999998765
No 302
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=6.5e-16 Score=161.90 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=102.2
Q ss_pred eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----cCccccccc--cc-------ccch----------H
Q 003681 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----CGLMVPAES--AS-------IPYF----------D 547 (803)
Q Consensus 495 ~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----~G~~Vpa~~--a~-------i~~~----------d 547 (803)
.+..|+|| |++++++||||+||||+||++.|++.... .+.++|... .+ +++. +
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 36788888 89999999999999999999999885432 233344321 00 0000 0
Q ss_pred -----H-H--------------h-hhCCcCCCccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 548 -----A-I--------------M-LHMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 548 -----~-I--------------~-~~i~~~d~l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
+ | + .-++....+.....+.|.+.+....+++ .+.+|++++|||||-|||......+..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 0 0 0 0111222222333445555555444444 489999999999999999999999987
Q ss_pred HHHHHHHhcCCEEEEEccCh-hhhhCcccccccccceeEEE
Q 003681 606 SIIETLDNIGCLGIVSTHLH-GIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 606 alle~L~~~g~tvIivTH~~-el~~l~~~~~~v~~~~m~~~ 645 (803)
.+-++..++++||+++||++ +++.++++.-.+..+.+.++
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 77777788899999999997 46677776666666666543
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=175.17 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=100.5
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccc-
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA- 541 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a- 541 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .-.+++++..
T Consensus 318 ~~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 393 (530)
T PRK15064 318 NALEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAY 393 (530)
T ss_pred ceEEEEeeEEee----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccc
Confidence 357888887665 34579999998 89999999999999999999999862210 1124454321
Q ss_pred -c---ccchHH----------------HhhhCCcC-CCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHH
Q 003681 542 -S---IPYFDA----------------IMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 542 -~---i~~~d~----------------I~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~ 599 (803)
. ....+. ++..++.. +......+.+|.++++...+ .+.+.+|+++||||||+|||+..
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 473 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1 111111 22233331 22334456778888876554 44489999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
...+. .+++.+ +.|+|++||+.++..
T Consensus 474 ~~~l~-~~l~~~---~~tvi~vsHd~~~~~ 499 (530)
T PRK15064 474 IESLN-MALEKY---EGTLIFVSHDREFVS 499 (530)
T ss_pred HHHHH-HHHHHC---CCEEEEEeCCHHHHH
Confidence 88776 444443 469999999998764
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.60 E-value=5e-15 Score=176.35 Aligned_cols=165 Identities=14% Similarity=0.151 Sum_probs=111.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------------- 530 (803)
+.+++++..|....+++.++++++| |++++|+||||+|||||+|+|+|+....
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 84 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR 84 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence 5677776655211223579999998 8999999999999999999999986211
Q ss_pred -hcCcccccccccccc---hHH---------------------HhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCe
Q 003681 531 -ICGLMVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i~~---~d~---------------------I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~ps 584 (803)
+...+++++...++. .++ ++..++..+........++.++++...+. +.+.+|+
T Consensus 85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~ 164 (648)
T PRK10535 85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164 (648)
T ss_pred hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 112244443322211 111 12222332333334456777777755544 4489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~ 643 (803)
++|+|||++|+|+.....+. .+++.+.+.|.++|++||+.++.+.+++.-.+..+.+.
T Consensus 165 lLllDEP~~gLD~~s~~~l~-~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 165 VILADEPTGALDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999988886 67777777799999999999988766554444444443
No 305
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.9e-15 Score=178.05 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=100.4
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCccccccc-
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAES- 540 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~- 540 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .-.|+++..
T Consensus 310 ~~~l~~~~l~~~y----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~ 385 (638)
T PRK10636 310 NPLLKMEKVSAGY----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385 (638)
T ss_pred CceEEEEeeEEEe----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcch
Confidence 3457788887655 35679999998 89999999999999999999999863211 112344421
Q ss_pred cccc----ch---------------HHHhhhCCcC-CCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHH
Q 003681 541 ASIP----YF---------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 541 a~i~----~~---------------d~I~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~ 599 (803)
..+. .. ..++..++.. +......+.+|.++++...+ .+.+.+|+++||||||+|||+..
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1110 01 1122233332 12344556788888775554 44489999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 600 g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
...+. .++..+ +.|+|++|||.++..
T Consensus 466 ~~~l~-~~L~~~---~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 466 RQALT-EALIDF---EGALVVVSHDRHLLR 491 (638)
T ss_pred HHHHH-HHHHHc---CCeEEEEeCCHHHHH
Confidence 88886 444443 349999999998764
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.60 E-value=6.1e-15 Score=172.30 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=105.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.++|++..| .+++++++|+|+ |+.++|+||||||||||+++|+|+..... .
T Consensus 322 ~i~~~~v~f~y---~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAY---QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEe---CCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 47788876554 334579999999 89999999999999999999999862211 1
Q ss_pred Cccccccccccc-------------chHHHhhhCCcCCCccCC-----ccchHHHHHHHHH-HHHhCCCCeEEEEeCCCC
Q 003681 533 GLMVPAESASIP-------------YFDAIMLHMKSYDSPADG-----KSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 593 (803)
Q Consensus 533 G~~Vpa~~a~i~-------------~~d~I~~~i~~~d~l~~~-----~Stfs~em~~l~~-iLa~a~~psLLLLDEP~s 593 (803)
-.++|++...+. ........++..+....+ -..+|.+.++... +.+.+.+|+++||||||+
T Consensus 399 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred eEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 113333221100 001112222222221111 2357777666444 344489999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003681 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
++|+.....+...+.+.+++.++|+|++||+.+....+++.-.+..+
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 525 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNG 525 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECC
Confidence 99999988887666665555689999999999877766554433333
No 307
>PRK13409 putative ATPase RIL; Provisional
Probab=99.59 E-value=4.5e-15 Score=174.74 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=95.6
Q ss_pred CceeeeccCC---CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------hcCccc-----------------
Q 003681 493 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMV----------------- 536 (803)
Q Consensus 493 ~~~VlndVsL---Gei~~ItGPNGsGKSTLLr~Iagl~~la----------------q~G~~V----------------- 536 (803)
+.+++++++. |++++|+||||+|||||||+|+|+.... ..|..+
T Consensus 86 ~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred CceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 3578888887 8999999999999999999999986321 111111
Q ss_pred cccccccc------------------chHHHhhhCCcCCCccCCccchHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCH
Q 003681 537 PAESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 537 pa~~a~i~------------------~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~psLLLLDEP~sGLD~ 597 (803)
++.....+ ..+.++..++.........+.+|.++++...+. +.+.+|+++||||||++||+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 11000000 011223334444344555677888888766544 44899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.....+. .+++.+.+ |.++|++||++++..
T Consensus 246 ~~~~~l~-~~i~~l~~-g~tvIivsHd~~~l~ 275 (590)
T PRK13409 246 RQRLNVA-RLIRELAE-GKYVLVVEHDLAVLD 275 (590)
T ss_pred HHHHHHH-HHHHHHHC-CCEEEEEeCCHHHHH
Confidence 9998886 67777777 999999999998764
No 308
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=3.8e-15 Score=158.78 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=99.2
Q ss_pred eeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cccccc------------ccccccchHHHhhhCC
Q 003681 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVPA------------ESASIPYFDAIMLHMK 554 (803)
Q Consensus 496 VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vpa------------~~a~i~~~d~I~~~i~ 554 (803)
-++|++| |+|++|.|-+|||||||+|++.+++..... |..+.. ..+.+++-..++.+.+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4577777 899999999999999999999998733221 111100 0012222222333333
Q ss_pred cCCCcc-------------------------------CCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHH
Q 003681 555 SYDSPA-------------------------------DGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 555 ~~d~l~-------------------------------~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~ 602 (803)
+.+|.. .....+|.+|+|..-+ -+.+++|+++|+|||||.|||--+..
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 333333 3344667889886654 34489999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003681 603 IAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 603 L~~alle~L~~~g~tvIivTH~~el~-~l~~~~~~v~~~ 640 (803)
+-..+++.-.+.++||+|+|||++++ ++.++..-+..+
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 98888887788899999999999886 444443333333
No 309
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=3.8e-15 Score=160.25 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=104.2
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh---hhc-C----------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---GIC-G---------------- 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l---aq~-G---------------- 533 (803)
++++|++-.|....+...+++|||| |++++|+|.+||||||+.++|.|++.- ... |
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 3556666554333344678999999 899999999999999999999998731 111 1
Q ss_pred ---------cccccccc-cc-cc---hHH-----------------------HhhhCCcCCC---ccCCccchHHHHHHH
Q 003681 534 ---------LMVPAESA-SI-PY---FDA-----------------------IMLHMKSYDS---PADGKSSFQVEMSEI 573 (803)
Q Consensus 534 ---------~~Vpa~~a-~i-~~---~d~-----------------------I~~~i~~~d~---l~~~~Stfs~em~~l 573 (803)
.+++++.. .+ |. -++ ++..++..+. +......||.+|+|.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 11222210 00 00 011 1112222211 122334678899885
Q ss_pred HH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccc
Q 003681 574 RS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 574 ~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~-~l~~~ 633 (803)
.. +++.+.+|+|||.||||++||......|. .+++.+. +.|.++||+|||+.++ +++++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl-~Ll~~l~~e~~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQIL-DLLKELQREKGTALILITHDLGVVAEIADR 223 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 54 56679999999999999999999999998 7777775 5899999999999975 44443
No 310
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.1e-15 Score=162.21 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=105.3
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcC--------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG-------------- 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G-------------- 533 (803)
..+.+++++..|- .+.+.++++++| |++++|+|||||||||||++|+|+.... ..|
T Consensus 79 ~~i~~~nls~~y~--~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYM--NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEec--CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4578888876652 134579999999 8999999999999999999999986320 011
Q ss_pred ---------cccccccccc--cchHHHh----------------------hhCCcC----CCccCCccchHHHHHHHHHH
Q 003681 534 ---------LMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 534 ---------~~Vpa~~a~i--~~~d~I~----------------------~~i~~~----d~l~~~~Stfs~em~~l~~i 576 (803)
.++|+....+ ...+++. ...+.. ..+......+|.+.++...+
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1233332111 1111221 011110 11223345677777765543
Q ss_pred -HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003681 577 -VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 577 -La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|+|+.....+. .+++.+.+ ++|+|++||+++... .+++...+..+
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~-~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIE-ELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3448999999999999999999888875 66666665 689999999998864 35544333333
No 311
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.3e-15 Score=149.86 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=94.0
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--------------------hhcCcccccccccccch-
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIPYF- 546 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--------------------aq~G~~Vpa~~a~i~~~- 546 (803)
.++.+++++++ |++.+|+||||+|||||||.++|-... ++.-..+|+....-+.|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 47889999998 899999999999999999999996521 11111122221110001
Q ss_pred -HHHhhhCCcC---------CC----------------ccCCccchHHHHHH---HHHHHHhC----CCCeEEEEeCCCC
Q 003681 547 -DAIMLHMKSY---------DS----------------PADGKSSFQVEMSE---IRSIVTAT----TSRSLVLIDEICR 593 (803)
Q Consensus 547 -d~I~~~i~~~---------d~----------------l~~~~Stfs~em~~---l~~iLa~a----~~psLLLLDEP~s 593 (803)
..+ ..||.. ++ ......++|.+-++ ++..++.. ..+..++|||||+
T Consensus 92 v~eV-V~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 92 VQEV-VQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred HHHH-HHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 000 111110 00 00111233444433 33455553 3456999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003681 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m 642 (803)
.||......++ .+.+.+...|..|+.+-||++++. ++++.--++.+++
T Consensus 171 aLDi~HQ~~tl-~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv 219 (259)
T COG4559 171 ALDIAHQHHTL-RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRV 219 (259)
T ss_pred ccchHHHHHHH-HHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeE
Confidence 99999999887 888999888999999999999975 4444333334433
No 312
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.1e-15 Score=150.57 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=100.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cccccccc--------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVPAES-------- 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vpa~~-------- 540 (803)
+.++++++.| +++.|++++|+ |.++.|+||||+||||||.+++.+..+... |..+....
T Consensus 2 I~i~nv~K~y----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSY----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhh----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4567777766 57899999998 899999999999999999999998733221 11111100
Q ss_pred ccccchHHHhhhCCcCCCcc---------------------------------CCccchHHHHHHHHHHHH-hCCCCeEE
Q 003681 541 ASIPYFDAIMLHMKSYDSPA---------------------------------DGKSSFQVEMSEIRSIVT-ATTSRSLV 586 (803)
Q Consensus 541 a~i~~~d~I~~~i~~~d~l~---------------------------------~~~Stfs~em~~l~~iLa-~a~~psLL 586 (803)
+.+.+-..+-.+++++|-+. ..+..+|.+.++.+.+.. .+.+.+.+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 11112222223333333222 223344555555554332 28999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~ 629 (803)
+||||.++||......++ .+++.+ .+.|+|++++-||.+++.
T Consensus 158 lLDEPLNNLDmkHsv~iM-k~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIM-KILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred EecCcccccchHHHHHHH-HHHHHHHHHhCCeEEEEEecccHHH
Confidence 999999999999999998 666666 567999999999999985
No 313
>PLN03211 ABC transporter G-25; Provisional
Probab=99.58 E-value=3.2e-15 Score=178.05 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=99.3
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-hc-----------------Cccccccccccc---chH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-IC-----------------GLMVPAESASIP---YFD 547 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-q~-----------------G~~Vpa~~a~i~---~~d 547 (803)
++.+++|+++ |++++|+||||||||||||+|+|..... .. ..+++++....+ ..+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 5689999998 8999999999999999999999986321 01 123444322111 111
Q ss_pred H------------------------HhhhCCcCCCc-----cCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 548 A------------------------IMLHMKSYDSP-----ADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 548 ~------------------------I~~~i~~~d~l-----~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
. ++..++..+.. ......+|.++++... +.+.+.+|+++||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 1 11122221110 0112346777666444 4555899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChh--hhhCcccccccccceeE
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~e--l~~l~~~~~~v~~~~m~ 643 (803)
.....+. .+++.+.+.|.|+|++||+++ +.++.++.-.+..+++.
T Consensus 240 ~~~~~l~-~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 240 TAAYRLV-LTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 9999887 677777777999999999985 45555554444444443
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.58 E-value=5.3e-15 Score=173.07 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=100.7
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccc-
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA- 541 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a- 541 (803)
..+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .-.++|++..
T Consensus 321 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 321 KVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred eEEEEeeEEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 347778887654 34679999998 89999999999999999999999863211 0124444321
Q ss_pred cc---cchH-------------------HHhhhCCcCC-CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 542 SI---PYFD-------------------AIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 542 ~i---~~~d-------------------~I~~~i~~~d-~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
.. ...+ .++..++..+ ......+++|.++++... +.+.+.+|+++||||||+|||+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 11 1111 1223334322 233445678888887655 4445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.....+. .++..+ +.++|++||+.++..
T Consensus 477 ~~~~~l~-~~l~~~---~~~viivsHd~~~~~ 504 (552)
T TIGR03719 477 ETLRALE-EALLEF---AGCAVVISHDRWFLD 504 (552)
T ss_pred HHHHHHH-HHHHHC---CCeEEEEeCCHHHHH
Confidence 9988886 455544 248999999998764
No 315
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9.3e-15 Score=146.31 Aligned_cols=133 Identities=13% Similarity=0.182 Sum_probs=88.9
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccccc-------cccc----------c
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAES-------ASIP----------Y 545 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa~~-------a~i~----------~ 545 (803)
++..++.+++| |+++.|+||||+|||||||+|+|+..... .|..+.... -+++ .
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 45678888888 89999999999999999999999873221 111111110 0111 1
Q ss_pred hHH--H----------------hhhCCcCCCccCCccchHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 003681 546 FDA--I----------------MLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 606 (803)
Q Consensus 546 ~d~--I----------------~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-a~~psLLLLDEP~sGLD~~~g~~L~~a 606 (803)
+.+ + ...++..+-.......+|.++++...+.+. +..++|.|||||++++|......+ ..
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l-~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-TA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH-HH
Confidence 111 1 112222233333445667787776655554 899999999999999999655555 57
Q ss_pred HHHHHHhcCCEEEEEccCh
Q 003681 607 IIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 607 lle~L~~~g~tvIivTH~~ 625 (803)
++..-..+|-.||++||..
T Consensus 172 l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHhcCCCEEEEecCCc
Confidence 7777777788999999975
No 316
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.57 E-value=5.3e-14 Score=164.26 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=102.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..|- .+++.+++|+++ |+.++|+||||||||||+|+++|+....+ .
T Consensus 316 ~i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPP--GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 478888865541 224679999998 89999999999999999999999873211 1
Q ss_pred Ccccccccccc--cchHHHh------------------------hhC--CcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASI--PYFDAIM------------------------LHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i--~~~d~I~------------------------~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+ ...+++. ..+ +....+..+...+|.+.++... +.+.+.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 12344432211 0111111 111 0011111223456777666443 44458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
+++||||||+|+|+.....+. ..+..+...++|+|++||+.+..+.+++.
T Consensus 474 ~ililDEpts~LD~~~~~~i~-~~l~~~~~~~~tvi~ith~~~~~~~~d~i 523 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALA-NAIKALKARGITVVVITHRPSLLGCVDKI 523 (544)
T ss_pred CEEEEeCCccccCHHHHHHHH-HHHHHHhhCCCEEEEEeCCHHHHHhCCEE
Confidence 999999999999999888886 55555555689999999999876655443
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=166.03 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=114.0
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh----------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la---------------------- 530 (803)
-+.++|+...|....+...+++|+|| |++++|+|.+||||||+.++|.|+....
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 46778887665443333479999999 9999999999999999999999987211
Q ss_pred ------hcCcccccccc-cc-c------ch-------------------HHHhhhCCcCCCccC--CccchHHHHHHHHH
Q 003681 531 ------ICGLMVPAESA-SI-P------YF-------------------DAIMLHMKSYDSPAD--GKSSFQVEMSEIRS 575 (803)
Q Consensus 531 ------q~G~~Vpa~~a-~i-~------~~-------------------d~I~~~i~~~d~l~~--~~Stfs~em~~l~~ 575 (803)
....+++++.. .+ | ++ ..++..++..+.... ....+|.+|+|...
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 01112333321 01 1 00 124444555444443 55678999988654
Q ss_pred -HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Cccccccccccee
Q 003681 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 576 -iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m 642 (803)
+++.+.+|+|+|+||||++||+.....|. .+++.+ .+.|.++||+|||+++.. ++++...+..+.+
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL-~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQIL-DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHH-HHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 55669999999999999999999999998 555555 578999999999999864 4444433334433
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.57 E-value=2.7e-15 Score=175.66 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=100.7
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCccccccc-c
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAES-A 541 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~-a 541 (803)
..+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+..... .-.++|++. .
T Consensus 323 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 323 KVIEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred eEEEEEeEEEEE----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 347788887654 34679999998 89999999999999999999999863211 012455542 1
Q ss_pred cc---cchHH-------------------HhhhCCcCC-CccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCH
Q 003681 542 SI---PYFDA-------------------IMLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 542 ~i---~~~d~-------------------I~~~i~~~d-~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~ 597 (803)
.. ...+. ++..++..+ ......+.+|.++++...+ .+.+.+|+++||||||+|||+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 11 11111 222333321 2234456788888876554 445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.....+. .++..+ +.++|++||+.++..
T Consensus 479 ~~~~~l~-~~l~~~---~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 479 ETLRALE-EALLEF---PGCAVVISHDRWFLD 506 (556)
T ss_pred HHHHHHH-HHHHhC---CCeEEEEECCHHHHH
Confidence 9988886 555544 238999999998764
No 319
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=3e-15 Score=155.43 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------------cCcccccccc----c-----cc
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------CGLMVPAESA----S-----IP 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------------~G~~Vpa~~a----~-----i~ 544 (803)
...+++|||| |+.++|+|+||||||||||+|+|+..+.. ...+-|.-.+ . ++
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 4678999999 89999999999999999999999873322 1122222110 0 00
Q ss_pred --------chHHHhhhCCcCCCccCCccchHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003681 545 --------YFDAIMLHMKSYDSPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 545 --------~~d~I~~~i~~~d~l~~~~Stfs~em~-~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g 615 (803)
..+.|..--...+-+..+..++|.+|. ++...++...+|+++|+||-.+--|+.-...=. ..++.+.+++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~ 197 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKN 197 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcC
Confidence 011222222233456677889999997 467788889999999999999999998777654 6666776677
Q ss_pred CEEEEEccChhhh-hCcccccccccceeEE
Q 003681 616 CLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 616 ~tvIivTH~~el~-~l~~~~~~v~~~~m~~ 644 (803)
.|+|++||+++.. +++++..-+..+.+..
T Consensus 198 ~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 198 KTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred CEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 9999999999876 4555444444554443
No 320
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.57 E-value=7.4e-15 Score=174.59 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=93.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC----ccccccc----
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAES---- 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G----~~Vpa~~---- 540 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+..... .| .++++..
T Consensus 4 l~i~~ls~~~----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 4 ISIHGAWLSF----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEeeEEEEe----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 5667776655 35679999998 89999999999999999999999863211 11 1122110
Q ss_pred -ccccch-----------------------------------------------------HHHhhhCCcCCCccCCccch
Q 003681 541 -ASIPYF-----------------------------------------------------DAIMLHMKSYDSPADGKSSF 566 (803)
Q Consensus 541 -a~i~~~-----------------------------------------------------d~I~~~i~~~d~l~~~~Stf 566 (803)
..+... ..++..++.. .....+++
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~L 157 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSL 157 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhc
Confidence 000000 0011111111 12345678
Q ss_pred HHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 567 QVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 567 s~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
|.++++...+ .+.+.+|+++||||||+|||+.....+. .++..+ +.++|++||+.++..
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~-~~L~~~---~~tvlivsHd~~~l~ 217 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE-GFLKTF---QGSIIFISHDRSFIR 217 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHhC---CCEEEEEeCCHHHHH
Confidence 8888776554 4448999999999999999999877665 444433 469999999998764
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.56 E-value=8.5e-15 Score=174.08 Aligned_cols=147 Identities=13% Similarity=0.182 Sum_probs=97.9
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh----cC-----cccccccc
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----CG-----LMVPAESA 541 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq----~G-----~~Vpa~~a 541 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+..... .| .|+++...
T Consensus 317 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~ 392 (635)
T PRK11147 317 KIVFEMENVNYQI----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA 392 (635)
T ss_pred CceEEEeeeEEEE----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc
Confidence 3357888887655 34679999998 89999999999999999999999862210 01 23444321
Q ss_pred -c---ccchHHH-------------------hhhCCcC-CCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCC
Q 003681 542 -S---IPYFDAI-------------------MLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 542 -~---i~~~d~I-------------------~~~i~~~-d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD 596 (803)
. ....+.+ +..++.. +......+.+|.++++...+ .+.+.+|+++||||||+|||
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 1 1112222 1122221 12233445678888775554 44489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.....+. .+++. .+.|+|++|||.++..
T Consensus 473 ~~~~~~l~-~~l~~---~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 473 VETLELLE-ELLDS---YQGTVLLVSHDRQFVD 501 (635)
T ss_pred HHHHHHHH-HHHHh---CCCeEEEEECCHHHHH
Confidence 98876664 34333 3569999999998764
No 322
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=1.7e-14 Score=150.38 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=57.2
Q ss_pred ccCCccchHHHHHHHHHHH-HhCCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 559 PADGKSSFQVEMSEIRSIV-TATTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 559 l~~~~Stfs~em~~l~~iL-a~a~~p--sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
.......+|.++++...+. +.+.+| +++|+||||+|+|+.....+. .++..+.+.|.++|++||++++...+++
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~tii~itH~~~~~~~~d~ 207 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTVLVVEHDEDTIRAADH 207 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEEeCHHHHHhCCE
Confidence 4445667888887755543 346666 699999999999999988887 5666677779999999999988765443
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.56 E-value=1.5e-14 Score=170.39 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=101.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| .+++.+++|+++ |+.++|+|+||||||||+|.|+|+.... +.
T Consensus 334 ~I~~~~vsf~y---~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSY---DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEe---CCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47788876554 233579999999 8999999999999999999999987321 12
Q ss_pred Cccccccccccc--chHHHhh---------------hCCc-----------CCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIML---------------HMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~~---------------~i~~-----------~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+. ..+++.. ..+. ...+..+...+|.+.+|... +.+.+.+|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 234555432211 1111110 0010 00111222346776655443 33448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
+++||||||+++|+.....+...+ +.+. .++|+|++||+.+..+.+++.
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l-~~~~-~~~tvIiitHr~~~~~~~D~i 539 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAAL-DELM-KGRTTFIIAHRLSTVRNADRI 539 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHHh-cCCEEEEEEecHHHHHhCCEE
Confidence 999999999999999988886444 4443 479999999999887766544
No 324
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.56 E-value=1.3e-14 Score=174.28 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=104.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|- ..++.+++|+|| |+.++|+||||||||||+|+|+|+.... +.
T Consensus 477 ~I~~~~vsf~y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYS--PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecC--CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 478888865542 124679999999 8999999999999999999999987221 12
Q ss_pred Cccccccccccc--chHHHh------------------------hhC--CcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM------------------------LHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~------------------------~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.+||++...+. ..+++. ..+ |....+..+-..+|.+.+|... +.+.+.+|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 234555432111 111111 001 1111111223456777666444 33448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~ 641 (803)
+++||||||+++|+.....+...+ .+.++|+|++||.++....+++.-.+..+.
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l----~~~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNL----RRRGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHH----HhcCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999877776444 335899999999999887766544444433
No 325
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.56 E-value=1.5e-14 Score=158.79 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=85.6
Q ss_pred EEcCCCCCchHHHHHHHHhHhhhh-----c-------------Cccccccccccc---chHH------------------
Q 003681 508 LTGPNGGGKSSLLRSICAASLLGI-----C-------------GLMVPAESASIP---YFDA------------------ 548 (803)
Q Consensus 508 ItGPNGsGKSTLLr~Iagl~~laq-----~-------------G~~Vpa~~a~i~---~~d~------------------ 548 (803)
|+||||||||||||+|+|+..... . ..+++++...++ ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999872110 1 123333322211 1111
Q ss_pred ---HhhhCCcCCCccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEcc
Q 003681 549 ---IMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTH 623 (803)
Q Consensus 549 ---I~~~i~~~d~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH 623 (803)
++..++..+........+|.++++...+ .+.+.+|+++|||||++|||+.....+. .+++.+. +.|.|+|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 1222233222333445677787775544 4458999999999999999999988886 5555554 55899999999
Q ss_pred Chhhh-hCccccccccccee
Q 003681 624 LHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 624 ~~el~-~l~~~~~~v~~~~m 642 (803)
+.+.+ .++++...+..+.+
T Consensus 160 d~~e~~~~~d~i~vl~~G~i 179 (325)
T TIGR01187 160 DQEEAMTMSDRIAIMRKGKI 179 (325)
T ss_pred CHHHHHHhCCEEEEEECCEE
Confidence 99765 45554444444433
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.55 E-value=3.1e-14 Score=166.76 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=105.6
Q ss_pred ceEEEeccCccccccCC-CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cC------------
Q 003681 476 NCLKMNGLSPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG------------ 533 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~-~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G------------ 533 (803)
..+.+++++..|....+ .+++++++|| |++++|+||||||||||+++|+|+..... .|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35788888766521111 2469999999 89999999999999999999999863211 11
Q ss_pred ---cccccccccc---------c-----chHHHhhhCCcCCCcc---CC---ccchHHHHHHHHH-HHHhCCCCeEEEEe
Q 003681 534 ---LMVPAESASI---------P-----YFDAIMLHMKSYDSPA---DG---KSSFQVEMSEIRS-IVTATTSRSLVLID 589 (803)
Q Consensus 534 ---~~Vpa~~a~i---------~-----~~d~I~~~i~~~d~l~---~~---~Stfs~em~~l~~-iLa~a~~psLLLLD 589 (803)
.+++++...+ + .........+..+.+. .+ ...+|.+.++... +.+.+.+|+++|||
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1222221100 0 0001122222222111 11 1356777666544 34448999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccc
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 638 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~ 638 (803)
|||+++|+.....+...+++.++..++|+|++||+.+..+.+++.-.+.
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~ 544 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLA 544 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 9999999999888876677666667899999999998776665443333
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.55 E-value=1.8e-14 Score=172.84 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=98.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCccccccc-cc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAES-AS 542 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~-a~ 542 (803)
.+.+++++..| .+++.++++++| |++++|+||||||||||||+|+|+..... ...++++.. ..
T Consensus 508 ~L~~~~ls~~y---~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 508 IISFSDASFGY---PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred eEEEEeeEEEe---CCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 47778887654 234578999998 89999999999999999999999863211 011333321 00
Q ss_pred ccc-------------------hHHHhhhCCcCC-CccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHH
Q 003681 543 IPY-------------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 543 i~~-------------------~d~I~~~i~~~d-~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~ 601 (803)
+.. ...++..++..+ ........+|.++++...+ .+.+.+|+++||||||+|||+....
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 000 012233344432 2344567788888876554 4458999999999999999999877
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 602 CIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 602 ~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+... +.+.+.++|++||+.++..
T Consensus 665 ~l~~~----L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 665 ALIQG----LVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred HHHHH----HHHcCCEEEEEECCHHHHH
Confidence 76533 3332349999999998765
No 328
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=2.3e-14 Score=168.86 Aligned_cols=153 Identities=12% Similarity=0.196 Sum_probs=101.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| .+++.+++|+++ |+.++|+|+||||||||+|+|+|+.... +.
T Consensus 340 ~i~~~~v~f~y---~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAY---RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred eEEEEEEEEEe---CCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 47888876554 234579999999 8999999999999999999999987322 12
Q ss_pred Ccccccccccccc--hHHH--------------hhhCCcC-----------CCccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 533 GLMVPAESASIPY--FDAI--------------MLHMKSY-----------DSPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~~--~d~I--------------~~~i~~~-----------d~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
-.++|++...++. .+++ ....+.. ..+...-..+|.+.+|... +.+.+.+|+
T Consensus 417 i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 417 VAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred eEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 2345554332211 1111 1111111 1111122346776655443 444489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
++||||||+++|+.....+.. .+..+.+ ++|+|++||..+....+++.
T Consensus 497 illlDEpts~LD~~t~~~i~~-~l~~~~~-~~tvIivtHr~~~l~~~D~i 544 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQ-ALAAVRE-HTTLVVIAHRLSTIVEADTI 544 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEecchHHHHhCCEE
Confidence 999999999999998888864 4444433 68999999999887766544
No 329
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.55 E-value=6.4e-14 Score=167.06 Aligned_cols=162 Identities=13% Similarity=0.125 Sum_probs=107.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--------------------hhc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--------------------aq~ 532 (803)
.+.+++++-.|. ..+..+++|+++ |+.++|+|+||||||||+|++.|+... .+.
T Consensus 471 ~I~~~nvsf~y~--~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 471 EIEFENVSFRYG--PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred eEEEEEEEEEeC--CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 478888875552 233579999999 899999999999999999999998722 222
Q ss_pred Cccccccccccc--chH------------HHhh--------------hCCcCCCccCCccchHHHHHHHHHHH-HhCCCC
Q 003681 533 GLMVPAESASIP--YFD------------AIML--------------HMKSYDSPADGKSSFQVEMSEIRSIV-TATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d------------~I~~--------------~i~~~d~l~~~~Stfs~em~~l~~iL-a~a~~p 583 (803)
-.+|+++...+. ..+ ++.. .+|-.-.+..+-+.+|.|.+|...+. +...+|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 334555432110 011 1110 11222222333456778877755433 348999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
+++|||||||++|+..-..+...+.+. . .|+|+|++||.+...+.+++.-.+..+.+
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~-~-~~~T~I~IaHRl~ti~~adrIiVl~~Gki 685 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQI-L-QGRTVIIIAHRLSTIRSADRIIVLDQGKI 685 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHH-h-cCCeEEEEEccchHhhhccEEEEccCCce
Confidence 999999999999998877776444333 2 36999999999999888776554444444
No 330
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.55 E-value=1.2e-13 Score=161.64 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=102.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++-.|- ..++++++++++ |+.++|+|+||+|||||+|+|+|+.... +.
T Consensus 330 ~i~~~~v~f~y~--~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcC--CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 478888865541 124679999998 8999999999999999999999987221 11
Q ss_pred Cccccccccccc--chHHH----------------hhhCCcCC-----------CccCCccchHHHHHHHHHH-HHhCCC
Q 003681 533 GLMVPAESASIP--YFDAI----------------MLHMKSYD-----------SPADGKSSFQVEMSEIRSI-VTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I----------------~~~i~~~d-----------~l~~~~Stfs~em~~l~~i-La~a~~ 582 (803)
-.++|++...+. ..+++ ....+..+ .+...-..+|.+.+|...+ .+.+.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 234555432110 01111 11111110 1111223567776665443 344899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 637 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v 637 (803)
|+++||||||+++|+.....+.. .+..+. .++|+|++||+.+....+++.-.+
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~-~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l 540 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQA-ALERLM-QGRTTLVIAHRLSTIEKADRIVVM 540 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHHh-CCCEEEEEehhhHHHHhCCEEEEE
Confidence 99999999999999999888864 444443 468999999999887776654433
No 331
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.55 E-value=1.2e-13 Score=165.55 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=104.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|- ..++++++|+|| |+.++|+||||||||||+|+|+|+.... +.
T Consensus 451 ~I~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYR--PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcC--CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 478888875552 234689999999 8999999999999999999999987221 12
Q ss_pred Cccccccccccc--chHHHh--------------hhCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCCCe
Q 003681 533 GLMVPAESASIP--YFDAIM--------------LHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~--------------~~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
-.+||++...+. ..+++. ...+..+ .+..+-..+|.+.+|... +.+.+.+|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 234555432211 111111 1111111 111223456777666444 444489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~ 641 (803)
++||||||+++|+.....+...+ .+.++|+|++||.++....+++.-.+..+.
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L----~~~~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESL----ERLKVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHH----HHhCCeEEEEecChHHHHcCCEEEEEECCE
Confidence 99999999999999877776443 333689999999998887766544443333
No 332
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.55 E-value=2.3e-14 Score=168.60 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=100.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC-------------------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG------------------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G------------------- 533 (803)
.+.+++++..+. +++++++|+|| |+.++|+||||||||||++.|+|+. .. .|
T Consensus 349 ~i~~~~vsf~~~---~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSP---DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEecc---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCCHHHHHh
Confidence 478888863332 34689999999 8999999999999999999999987 32 22
Q ss_pred --ccccccccccc--chHHHh------------------------hhC--CcCCCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 534 --LMVPAESASIP--YFDAIM------------------------LHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 534 --~~Vpa~~a~i~--~~d~I~------------------------~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
.+||++...+. ..++|. ..+ |..-.+...-..+|.+.+|... +.+.+.+
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 23444331110 111111 111 1111111222356777665443 4445899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~ 635 (803)
|+++||||||+++|+.....+.. .++.+. .++|+|++||.++....+++.-
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~-~l~~~~-~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQ-ALNAAS-RRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHH-HHHHHh-CCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999888874 444443 4789999999998877665443
No 333
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.54 E-value=2.3e-14 Score=168.87 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=100.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..| .+++.+++++++ |+.++|+||||||||||+++|+|+..... .
T Consensus 334 ~i~~~~v~~~y---~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEF---ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred eEEEEEEEEEC---CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47888886554 233568999998 89999999999999999999999863211 1
Q ss_pred Cccccccccccc--chHHHhh---------------hCCc-----------CCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIML---------------HMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~~---------------~i~~-----------~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+. ..+++.. ..+. ...+......+|.+.++... +.+.+.+|
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 123444432111 1111110 0000 01111222346667666443 44558999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
+++||||||+|+|+.....+. ..++.+. .+.|+|++||+.+....+++.
T Consensus 491 ~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~tvI~isH~~~~~~~~d~i 539 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVK-NAIDALR-KNRTTFIIAHRLSTVRNADLV 539 (585)
T ss_pred CEEEEECCccCCCHHHHHHHH-HHHHHHh-CCCEEEEEEcChHHHHcCCEE
Confidence 999999999999999988886 4555554 489999999999887655443
No 334
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.54 E-value=5.7e-15 Score=181.13 Aligned_cols=173 Identities=16% Similarity=0.167 Sum_probs=123.2
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Cccc---------c
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMV---------P 537 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~V---------p 537 (803)
+.+.+.++.+.|.. .+.+.+++++ |+++++.||||+||||++|++.|...+... |..+ .
T Consensus 563 ~~~~~~~L~k~y~~---~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG---KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecc---hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhh
Confidence 45666677666521 1117788888 899999999999999999999998743321 2222 1
Q ss_pred cccccccchHHHhhhCCcCCCcc-------------------------------CCccchHHHHHH-HHHHHHhCCCCeE
Q 003681 538 AESASIPYFDAIMLHMKSYDSPA-------------------------------DGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 538 a~~a~i~~~d~I~~~i~~~d~l~-------------------------------~~~Stfs~em~~-l~~iLa~a~~psL 585 (803)
..-++.|++|.++..++..|.+. ...++++.++++ +..+++.+.+|++
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 22355677766665555444331 223566777766 5667888999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEEEEeCCcee
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTV 652 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~-l~~~~~~v~~~~m~~~~~~~~l~ 652 (803)
++||||++|+||..+..+ |.++..+.+.|..+|++||.+++++ ++++...+.++++........++
T Consensus 720 i~LDEPstGmDP~arr~l-W~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHL-WDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred EEecCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999999777666 6999999887779999999999986 56666667777776654443333
No 335
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.54 E-value=2.8e-14 Score=171.15 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=102.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|- .+.+++++|+++ |+.++|+||||||||||+|+|+|+.... +.
T Consensus 463 ~I~~~~vsf~Y~--~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYP--GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeC--CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 578888865551 234679999999 8999999999999999999999986321 12
Q ss_pred Cccccccccccc--chHHHh---------------hhCCcC-----------CCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM---------------LHMKSY-----------DSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~i~~~-----------d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.+||++...+. ..+++. ...+.. -.+...-..+|.+.+|... +.+.+.+|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 234444432110 011111 001111 1111222457777666544 33448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~ 635 (803)
+++||||||+++|+.....+... +..+. .++|+|++||.++....+++.-
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~-l~~~~-~~~T~iiItHrl~~~~~~D~ii 670 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDR-LKRWL-AGKTLVLVTHRTSLLDLVDRII 670 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHh-CCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999998888744 44443 3789999999998877665443
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.54 E-value=3e-14 Score=164.95 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=94.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh------hcC---cccccccccc-
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------ICG---LMVPAESASI- 543 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la------q~G---~~Vpa~~a~i- 543 (803)
+.+.+++..| +++.+++++++ |+.++|+|+||+|||||||+|+|..... ..+ .+++++...-
T Consensus 4 i~~~~ls~~~----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 4 ITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred EEEeeeEEee----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 5566666554 67899999998 8999999999999999999999976211 111 1223322111
Q ss_pred --cchH---------------------------------------------------HHhhhCCcCCCccCCccchHHHH
Q 003681 544 --PYFD---------------------------------------------------AIMLHMKSYDSPADGKSSFQVEM 570 (803)
Q Consensus 544 --~~~d---------------------------------------------------~I~~~i~~~d~l~~~~Stfs~em 570 (803)
...+ .+...++..+. ....+++|.+.
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 0000 12222333332 45567788886
Q ss_pred HHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 571 SEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 571 ~~l~~iL-a~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+....+. +...+|+++||||||++||......+ -++|.+...|+|+||||.++.+
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL----e~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH----HHHHHhCCCcEEEEeCCHHHHH
Confidence 5544333 33899999999999999999764433 2444444449999999998865
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.54 E-value=1.5e-13 Score=161.39 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=102.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++-.|- .+++++++++++ |+.++|+||||||||||+|+|+|+.... +.
T Consensus 341 ~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecC--CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 478888764441 124679999999 8999999999999999999999987221 12
Q ss_pred Cccccccccccc--chHHHhh----------------hCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCC
Q 003681 533 GLMVPAESASIP--YFDAIML----------------HMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~~----------------~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
-.++|++...++ ..+++.. ..+..+ .+...-..+|.+.+|... +.+.+.+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 234555432211 1111111 001000 011112346777666444 3344899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 637 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v 637 (803)
|+++||||||+++|+.....+...+ ..+. .++|+|++||+.+....+++.-.+
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l-~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l 551 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAAL-DELQ-KNRTSLVIAHRLSTIEKADEILVV 551 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHH-HHHh-CCCEEEEEecchHHHHhCCEEEEE
Confidence 9999999999999999988887444 4443 468999999999887776654333
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.53 E-value=2.5e-14 Score=168.12 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=101.4
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|. .+++.+++|+++ |+.++|+||||||||||+|+|+|+.... +.
T Consensus 338 ~i~~~~v~f~y~--~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 338 SLTLNNVSFTYP--DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred eEEEEEEEEECC--CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 488888875552 123579999999 8999999999999999999999986221 11
Q ss_pred Cccccccccccc--chHH---------------HhhhCCcCCCcc----------CCccchHHHHHHHHH-HHHhCCCCe
Q 003681 533 GLMVPAESASIP--YFDA---------------IMLHMKSYDSPA----------DGKSSFQVEMSEIRS-IVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~---------------I~~~i~~~d~l~----------~~~Stfs~em~~l~~-iLa~a~~ps 584 (803)
-.++|++...+. ..++ .....+..+.+. .+...+|.+.++... +.+.+.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 234454432111 0111 111122221111 123456777666443 344489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
++||||||+++|+.....+... +..+. .++|+|++||.++....+++.
T Consensus 496 ililDE~ts~lD~~t~~~i~~~-l~~~~-~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILEL-LAEHA-QNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHH-HHHHc-CCCEEEEEecChhHHHhCCEE
Confidence 9999999999999998888744 44443 478999999999887665543
No 339
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.53 E-value=4.1e-14 Score=165.90 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=103.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..|-. ..++.++++++| |+.++|+||||||||||+|+|+|+..... .
T Consensus 337 ~i~~~~v~f~y~~-~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCC-CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 4788888655421 123679999998 89999999999999999999999873221 1
Q ss_pred Cccccccccccc--chHHHh------------------------hhC--CcCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM------------------------LHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~------------------------~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+. ..+++. ..+ |....+..+...+|.+.++... +.+.+.+|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 234455432111 111111 111 1111111223456666655443 44448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
+++|+||||+++|+.....+. ..++.+. .++|+|++||+.+....+++.-.+..+
T Consensus 496 ~ililDEpts~lD~~~~~~i~-~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQ-QALETLM-KGRTTLIIAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred CeEEEeCcccccCHHHHHHHH-HHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECC
Confidence 999999999999999877776 4445553 479999999999887766554433333
No 340
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.53 E-value=3.9e-14 Score=144.99 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=80.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------hcCc------------ccccccccc------cchHHHh
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLG--------------ICGL------------MVPAESASI------PYFDAIM 550 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------q~G~------------~Vpa~~a~i------~~~d~I~ 550 (803)
| +++|+||||+|||||+++|+++.... ..|. +++++.... ...+.++
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l 101 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEII 101 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHH
Confidence 6 99999999999999999999885211 0011 111111100 0012222
Q ss_pred hhCCcCCCccCCccchHHHHHHHHHHHHh-----CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 551 LHMKSYDSPADGKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 551 ~~i~~~d~l~~~~Stfs~em~~l~~iLa~-----a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
.. .+........++.++++...+... ..+|+++|+|||++|+|+.....+. .+++.+.+ +.++|++||++
T Consensus 102 ~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 102 EA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred hC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEEECCH
Confidence 22 222233445678888776554332 2567999999999999999988886 66666655 68999999999
Q ss_pred hhhhCc
Q 003681 626 GIFSLP 631 (803)
Q Consensus 626 el~~l~ 631 (803)
++...+
T Consensus 177 ~~~~~~ 182 (197)
T cd03278 177 GTMEAA 182 (197)
T ss_pred HHHhhc
Confidence 886543
No 341
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=3.3e-13 Score=156.37 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=97.9
Q ss_pred CcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC----------cccccc
Q 003681 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG----------LMVPAE 539 (803)
Q Consensus 474 g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G----------~~Vpa~ 539 (803)
+...+.++++...| .+++.++++++| |+.++|+||||+|||||||+|.|..... .| .|+++.
T Consensus 318 g~~vl~~~~~~~~y---~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 318 GKLVLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCeeEEEecccccc---CCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEeh
Confidence 44557778887665 334789999998 8999999999999999999997755221 12 122332
Q ss_pred cccc----cchH---------------HHhhhCCcC-CCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHH
Q 003681 540 SASI----PYFD---------------AIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 540 ~a~i----~~~d---------------~I~~~i~~~-d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~ 598 (803)
...+ ..++ ..+.+++.. +.......++|.+-+.... +...+.+|.++||||||+.||..
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~ 473 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHH
Confidence 2111 1111 122222221 2223344566766544333 33348899999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 599 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 599 ~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
...++. +.|.+...|+|+||||..+.+.
T Consensus 474 s~~aLe----~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 474 SLEALE----EALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHHHH----HHHHhCCCeEEEEeCCHHHHHh
Confidence 765554 5556667899999999998753
No 342
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.52 E-value=2.2e-13 Score=163.97 Aligned_cols=161 Identities=11% Similarity=0.064 Sum_probs=103.2
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.++++|++..|- ...++++++|+|| |+.++|+||||||||||+|.|+|+.... +.
T Consensus 478 ~I~~~nVsf~Y~-~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECC-CCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 488888875542 1124689999999 8999999999999999999999987321 12
Q ss_pred Cccccccccccc--chHHHh---------------hhCCc-----------CCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM---------------LHMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~i~~-----------~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+. ..+++. ...+. ...+..+-..+|.+.+|... +.+.+.+|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 234555432111 111111 11111 11111222456777666544 33448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
+++||||||+++|+.....+.. .....++|+|++||.++....+++.-.+.++.+
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~i 691 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGSV 691 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCEE
Confidence 9999999999999987666653 223357899999999988777665444444433
No 343
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.52 E-value=3.8e-14 Score=169.19 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=99.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASI 543 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a~i 543 (803)
.+.+++++..+ .+++.++++++| |++++|+||||||||||+|+|+|+..... .-.++|++....
T Consensus 451 ~i~~~nv~~~~---~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 451 GIKFENIPLVT---PNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred eEEEEeeEEEC---CCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 47778876543 235579999998 89999999999999999999999863211 113455543111
Q ss_pred --cchHHH----------------------hhhCCcCCCccC---------CccchHHHHHHHHHH-HHhCCCCeEEEEe
Q 003681 544 --PYFDAI----------------------MLHMKSYDSPAD---------GKSSFQVEMSEIRSI-VTATTSRSLVLID 589 (803)
Q Consensus 544 --~~~d~I----------------------~~~i~~~d~l~~---------~~Stfs~em~~l~~i-La~a~~psLLLLD 589 (803)
...+++ +...+..+.+.. ....+|.++++...+ .+.+.+|+++|||
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 111121 112222111111 124678887775544 4448999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
|||+|+|+.....+. +.+.+.|.|+|++||+.++...++
T Consensus 608 Epts~LD~~~~~~l~----~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 608 ECTSAVSVDVEGYMY----RLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred CCccCCCHHHHHHHH----HHHHHcCCEEEEEeCchHHHHhCC
Confidence 999999998766665 333445899999999999876554
No 344
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.52 E-value=5.2e-14 Score=168.92 Aligned_cols=160 Identities=12% Similarity=0.094 Sum_probs=104.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|- .+++.+++++++ |+.++|+|+||||||||+|+|+|+.... +.
T Consensus 455 ~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYA--PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 478888865541 234579999999 8999999999999999999999986221 12
Q ss_pred Cccccccccccc--chHHHh---------------hhCC-----------cCCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM---------------LHMK-----------SYDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~i~-----------~~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.+||++...++ ..+++. ...+ ....+..+...+|.+.+|... +.+.+.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 234555432111 011111 0111 111112223457777666444 44448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
+++||||||+++|+.....+...+ +.+. .++|+|++||+.+....+++.-.+.++
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNM-REIC-RGRTVIIIAHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHH-HHHh-CCCEEEEEeCChHHHHhCCEEEEEeCC
Confidence 999999999999999988887444 4443 578999999999887766544333333
No 345
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.52 E-value=5.1e-14 Score=165.39 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=98.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++-.|- .+++.+++++++ |+.++|+||||||||||+++|+|+.... +.
T Consensus 313 ~I~~~~v~~~y~--~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYP--QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECC--CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 367777654431 124579999998 8999999999999999999999986221 11
Q ss_pred Cccccccccccc--chHHHh---------------hhCCcCC-----------CccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM---------------LHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~i~~~d-----------~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
-.++|++...+. ..+++. ...+..+ .+......+|.+.++... +.+.+.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 123444321110 011110 0111111 011122346777666443 44458999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
+++||||||+++|+.....+.. .++.+. .++|+|++||+.+....+++
T Consensus 471 ~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILH-NLRQWG-EGRTVIISAHRLSALTEASE 518 (569)
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHHh-CCCEEEEEecchhHHHcCCE
Confidence 9999999999999999888874 444443 58999999999987765544
No 346
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.51 E-value=2.9e-13 Score=157.34 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=99.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~ 532 (803)
.+.+++++..|- .+.+++++|+++ |+.++|+||||||||||+|+|+|+..... .
T Consensus 320 ~i~~~~v~f~y~--~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYP--GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECC--CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 578888865551 123579999999 89999999999999999999999873211 1
Q ss_pred Cccccccccccc--chHHHh---------------hhCCcCC-----------CccCCccchHHHHHHHHHH-HHhCCCC
Q 003681 533 GLMVPAESASIP--YFDAIM---------------LHMKSYD-----------SPADGKSSFQVEMSEIRSI-VTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~i~~~d-----------~l~~~~Stfs~em~~l~~i-La~a~~p 583 (803)
-.++|++...+. ..+++. ...+..+ .+......+|.+.+|...+ .+.+.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 234444432111 111111 1111111 0111224567776665443 3448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+++||||||+++|+.....+...+ ..+. .++|+|++||+++....++
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEAL-RALA-QGRTVLLVTHRLALAERAD 524 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHH-HHhc-CCCEEEEEecCHHHHHhCC
Confidence 999999999999999988887444 4443 5799999999998876554
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.51 E-value=7.1e-14 Score=178.39 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=100.5
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh---hh-----hcC-----------c
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG-----ICG-----------L 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~---la-----q~G-----------~ 534 (803)
+.++|++..+....+++.+++|+++ |++++|+|||||||||||++|+|... .. ..| .
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 4566664433111235689999998 89999999999999999999999863 11 112 2
Q ss_pred cccccccccc---chH------------------------HHhhhCCcCCCccCCcc----chHHHHHHHHH-HHHhCCC
Q 003681 535 MVPAESASIP---YFD------------------------AIMLHMKSYDSPADGKS----SFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d------------------------~I~~~i~~~d~l~~~~S----tfs~em~~l~~-iLa~a~~ 582 (803)
+++++...++ ..+ .++..++..+....... .++.++++... +.+.+.+
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 3333221111 011 11122222111111111 47777776554 4455899
Q ss_pred Ce-EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh--hhCcccc
Q 003681 583 RS-LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI--FSLPLKI 634 (803)
Q Consensus 583 ps-LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el--~~l~~~~ 634 (803)
|+ ++||||||+|||+.....+. .+++.+++.|+|||++||+++. .+..++.
T Consensus 920 P~~iLlLDEPTsgLD~~~~~~i~-~~L~~la~~g~tvI~t~H~~~~~~~~~~D~v 973 (1394)
T TIGR00956 920 PKLLLFLDEPTSGLDSQTAWSIC-KLMRKLADHGQAILCTIHQPSAILFEEFDRL 973 (1394)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCCHHHHHhcCEE
Confidence 96 99999999999999988886 7777787789999999999874 2444443
No 348
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=5.5e-14 Score=166.66 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=100.8
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--hcC------------------ccccccccccc---
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--ICG------------------LMVPAESASIP--- 544 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--q~G------------------~~Vpa~~a~i~--- 544 (803)
+++.+++|+++ |++++|+|||||||||||++|+|..... ..| .+++++...++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 45789999998 8999999999999999999999975321 111 23343322111
Q ss_pred ch------------------------HHHhhhCCcCCCccCC------ccchHHHHHH-HHHHHHhCCCCeEEEEeCCCC
Q 003681 545 YF------------------------DAIMLHMKSYDSPADG------KSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 545 ~~------------------------d~I~~~i~~~d~l~~~------~Stfs~em~~-l~~iLa~a~~psLLLLDEP~s 593 (803)
.. +.++..++..+..... ...++.+.++ +.-+.+.+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 11 1122222222111111 1235665554 444556689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh--hhhhCcccccccccceeEE
Q 003681 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L~~~g~tvIivTH~~--el~~l~~~~~~v~~~~m~~ 644 (803)
|||+..+..+. ..++.+.+.|.|+|++||++ ++.++.++..-+..+++..
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999987 66677777799999999997 3566666655555555543
No 349
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.3e-13 Score=153.84 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=113.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhH-------------------hhhhcC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-------------------LLGICG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~-------------------~laq~G 533 (803)
.|.+++++-.| ..+++|++++|| |+-++|+|+|||||||++|+|..+. -+.+..
T Consensus 351 ~I~F~dV~f~y---~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSY---GPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEe---CCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 48889988665 356679999999 8999999999999999999999876 133445
Q ss_pred cccccccccccc--hH---------------HHhhhCCcCCCccC---Cc--------cchHHH-HHHHHHHHHhCCCCe
Q 003681 534 LMVPAESASIPY--FD---------------AIMLHMKSYDSPAD---GK--------SSFQVE-MSEIRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~~--~d---------------~I~~~i~~~d~l~~---~~--------Stfs~e-m~~l~~iLa~a~~ps 584 (803)
.+||++...+.. +. .+..+.+..|.+.. +- ...+.+ .++++.+.+.+.+|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 567776543211 00 11122222222211 11 123344 444555555699999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEE
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~ 644 (803)
++++|||||.||.+.-..+...++. ...+.|+|++-|++.+....+....+.++.+..
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e 565 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKE 565 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEE
Confidence 9999999999999998888866666 456899999999999998887766666665543
No 350
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.51 E-value=5.2e-14 Score=169.24 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=103.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.+.+++++..| ..++.+++|+++ |+.++|+||||||||||+|+|+|+.... +.
T Consensus 473 ~I~~~~vsf~y---~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSY---GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEc---CCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 57888887555 235679999999 8999999999999999999999986221 12
Q ss_pred Cccccccccccc--chHHHhh----------------hCCcC-----------CCccCCccchHHHHHHHHHH-HHhCCC
Q 003681 533 GLMVPAESASIP--YFDAIML----------------HMKSY-----------DSPADGKSSFQVEMSEIRSI-VTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~~----------------~i~~~-----------d~l~~~~Stfs~em~~l~~i-La~a~~ 582 (803)
-.+||++...+. ..+++.. ..+.. -.+..+-..+|.+.+|...+ .+.+.+
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 234555432111 0111110 00110 01112234567776665443 344899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~ 639 (803)
|+++||||||+++|+.....+...+. .+ .++|+|++||..+....+++.-.+..
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~-~~--~~~T~IiitHr~~~~~~~D~i~~l~~ 683 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLL-NL--QDKTIIFVAHRLSVAKQSDKIIVLDH 683 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHH-Hh--cCCEEEEEecchHHHHcCCEEEEEEC
Confidence 99999999999999998888875554 33 47899999999988877665433333
No 351
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=134.91 Aligned_cols=160 Identities=17% Similarity=0.237 Sum_probs=105.1
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc-----------cccccc--
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-----------MVPAES-- 540 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~-----------~Vpa~~-- 540 (803)
|.++|+...| +...++-||++ |+.+++.||+|+|||||+|.+..+.... .|- ..|.+.
T Consensus 3 irv~~in~~y----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 3 IQLNGINCFY----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred eEEccccccc----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccCccHHHH
Confidence 5566776655 45678889998 8999999999999999999998775321 111 112211
Q ss_pred -------ccccchHHHhhhCCcCCCccC--------------------------------CccchHHHHHHHHH-HHHhC
Q 003681 541 -------ASIPYFDAIMLHMKSYDSPAD--------------------------------GKSSFQVEMSEIRS-IVTAT 580 (803)
Q Consensus 541 -------a~i~~~d~I~~~i~~~d~l~~--------------------------------~~Stfs~em~~l~~-iLa~a 580 (803)
+.+++...++.++++.+|+.. ..-.++.+.++... +.+.+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 222222334444444443321 11122334333322 33348
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC-cccccccccceeE
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAMG 643 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l-~~~~~~v~~~~m~ 643 (803)
.+|.++|+||||+.|||+-...+. .|++.+.+.|.|-+++||..+.++. +.+...+.++++.
T Consensus 158 mkpqvllfdeptaaldpeitaqvv-~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIV-SIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHH-HHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 999999999999999999888886 8999999999999999999998753 3333334444443
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.51 E-value=4.4e-14 Score=169.57 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--hhhcC--ccccccc-----c--
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LGICG--LMVPAES-----A-- 541 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--laq~G--~~Vpa~~-----a-- 541 (803)
.|.+++++..| +++.+++|++| |++++|+||||||||||||+|+|... ....| .+++++. .
T Consensus 177 ~I~i~nls~~y----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 177 DIHMENFSISV----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eEEEceEEEEe----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 47777887665 35679999999 89999999999999999999998531 00000 0111110 0
Q ss_pred -------------------cccch-----------------------------H-------------------HHhhhCC
Q 003681 542 -------------------SIPYF-----------------------------D-------------------AIMLHMK 554 (803)
Q Consensus 542 -------------------~i~~~-----------------------------d-------------------~I~~~i~ 554 (803)
.+.+. . .++..++
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 00000 0 0011111
Q ss_pred cC-CCccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 555 SY-DSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 555 ~~-d~l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.. +.......++|.++++...+.. .+.+|+++||||||++||+.....+. .++ .+.+.++|++||+.++..
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~L---~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE-TYL---LKWPKTFIVVSHAREFLN 405 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHH---HHcCCEEEEEECCHHHHH
Confidence 11 1122334678888877655444 48999999999999999998876665 333 344789999999998764
No 353
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=145.66 Aligned_cols=154 Identities=13% Similarity=0.108 Sum_probs=107.4
Q ss_pred EEEeccCcccccc---CCC--ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccc-------cc
Q 003681 478 LKMNGLSPYWFDA---AEG--SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-------SA 541 (803)
Q Consensus 478 i~l~~l~~~~~~~---~~~--~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~-------~a 541 (803)
+.++++.+.|... ... ..+++|||| |++++|+|.|||||||+-|+|.++......-.+.... ..
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~ 84 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEE 84 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhH
Confidence 4556666554321 112 478899999 8999999999999999999999987433221111111 01
Q ss_pred cccchHHHhhhCCcCC-CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEE
Q 003681 542 SIPYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLG 618 (803)
Q Consensus 542 ~i~~~d~I~~~i~~~d-~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tv 618 (803)
.......++..++..+ ........|+.+.+|... +.+.+.+|+++++|||+|.||...+..+. .++..+. +.|.+.
T Consensus 85 ~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~ 163 (268)
T COG4608 85 RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTY 163 (268)
T ss_pred HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeE
Confidence 1122334555666443 344556678888776544 44458999999999999999999999987 6777774 569999
Q ss_pred EEEccChhhhhCcc
Q 003681 619 IVSTHLHGIFSLPL 632 (803)
Q Consensus 619 IivTH~~el~~l~~ 632 (803)
+|+|||+..+....
T Consensus 164 lFIsHDL~vv~~is 177 (268)
T COG4608 164 LFISHDLSVVRYIS 177 (268)
T ss_pred EEEEEEHHhhhhhc
Confidence 99999999987543
No 354
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=1.4e-13 Score=142.49 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=90.4
Q ss_pred eEEEeccCccccccCCCceeeeccCCCcEEEEEcCCCCCchHHHHHHHHhH-----hh--hhcCcccccccccc------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS-----LL--GICGLMVPAESASI------ 543 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsLGei~~ItGPNGsGKSTLLr~Iagl~-----~l--aq~G~~Vpa~~a~i------ 543 (803)
.+.++|...+ ++..+++++++ ++++|+|||||||||+|++|..+. .. .+.| +++......
T Consensus 5 ~l~l~nfk~~-----~~~~~l~~~~~-~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 5 KLVLENFKSY-----AGEQVIGPFHK-SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEEECcccC-----CCCeeeccCCC-CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 3566666532 35678888888 899999999999999999998432 00 1111 112211100
Q ss_pred ---cchHHH-----h--hhCC------------------cCCCccCCccchHHHHHHHHHHHHh-C----CCCeEEEEeC
Q 003681 544 ---PYFDAI-----M--LHMK------------------SYDSPADGKSSFQVEMSEIRSIVTA-T----TSRSLVLIDE 590 (803)
Q Consensus 544 ---~~~d~I-----~--~~i~------------------~~d~l~~~~Stfs~em~~l~~iLa~-a----~~psLLLLDE 590 (803)
..+... + ..+. ..+........++.++++...+... + .+|+++|+||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 001000 0 0000 0111111234566777765554432 2 3589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 591 P~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
|++|+|+.....+. .+++.+. .+.++|++||+.++.+.+++
T Consensus 158 Pt~gLD~~~~~~l~-~~l~~~~-~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 158 IDAALDFRNVSIVA-NYIKERT-KNAQFIVISLRNNMFELADR 198 (212)
T ss_pred CCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEECcHHHHHhCCE
Confidence 99999999888876 6666665 46789999999887776554
No 355
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.50 E-value=3.3e-14 Score=165.22 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=94.1
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------------------cC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------------------~G 533 (803)
.+.++|++..| .+++.+++|+|| |+.++|+||||||||||+|.|+|+..... .-
T Consensus 334 ~I~~~~vsf~Y---~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGY---PGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred eEEEEEEEEec---CCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 47788876554 334569999999 89999999999999999999999873211 22
Q ss_pred ccccccccccc--chHHHh---------------hhCCcCCC-----------ccCCccchHHHHHHHH-HHHHhCCCCe
Q 003681 534 LMVPAESASIP--YFDAIM---------------LHMKSYDS-----------PADGKSSFQVEMSEIR-SIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I~---------------~~i~~~d~-----------l~~~~Stfs~em~~l~-~iLa~a~~ps 584 (803)
.+||++...+. ..+++. ...+..+. +...-..+|.+.+|.. -+.+.+.+|+
T Consensus 411 ~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 411 SVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 35555432211 111111 11111110 1111234666766544 3444589999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
++||||||+++|+.....+...+. .+ ..++|+|++||.+
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~-~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLL-AA-LSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH-Hh-cCCCEEEEEecCC
Confidence 999999999999998888864444 33 3478999999963
No 356
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=3.6e-14 Score=142.74 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccc---------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA--------------- 538 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa--------------- 538 (803)
+.+.|++-.+ ++-.++|++|| |+.-+|+||||+||||+|..|+|-.-....-.++..
T Consensus 6 L~~~~vsVsF----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 6 LYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred EEEeceEEEE----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4556665444 56788999999 899999999999999999999997632211111100
Q ss_pred ccccccchHHHhhhCCcCCCccCC---------------------------------------ccchHHHHHHHHHHHHh
Q 003681 539 ESASIPYFDAIMLHMKSYDSPADG---------------------------------------KSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 539 ~~a~i~~~d~I~~~i~~~d~l~~~---------------------------------------~Stfs~em~~l~~iLa~ 579 (803)
...+-++.+.+|..+++.+|+... .+.+|.+.+|...|-..
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 001112233445555555544321 12223333333333222
Q ss_pred -CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 580 -TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 580 -a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+++|.|+|+|||.+|+.-.+....+ .++..++. +++++++.||+++.+.
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~-~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAG-KHSILVVEHDMGFVRE 211 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhc-CceEEEEeccHHHHHH
Confidence 7899999999999999999998887 77777765 5799999999998753
No 357
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=141.17 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=96.2
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCcccccc----c----ccccch--HHHhhh
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAE----S----ASIPYF--DAIMLH 552 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa~----~----a~i~~~--d~I~~~ 552 (803)
..+.+++++++ |+++.|+|.||+|||||++.|+|-+.+.. .|..|... + +.+++- ...+..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35788999998 89999999999999999999999773321 11111100 0 011110 011122
Q ss_pred CCcCCC---------------------------------------ccCCccchHHHHHH-HHHHHHhCCCCeEEEEeCCC
Q 003681 553 MKSYDS---------------------------------------PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 592 (803)
Q Consensus 553 i~~~d~---------------------------------------l~~~~Stfs~em~~-l~~iLa~a~~psLLLLDEP~ 592 (803)
++.++| +......+|.+.+| ++-+++.+.+|++++|||-|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 222222 22333455666666 34466669999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003681 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 593 sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~-~l~~~ 633 (803)
++|||..+..++...-+...+.+.|.+++||+++-+ .+..+
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence 999999999998777777778889999999999875 34433
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.48 E-value=1.3e-13 Score=175.91 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=95.4
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-h------cC------------ccccccccccc---ch
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-I------CG------------LMVPAESASIP---YF 546 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-q------~G------------~~Vpa~~a~i~---~~ 546 (803)
++.+++|+++ |++++|+||||||||||||+|+|..... . .| .+++++....+ ..
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3579999998 8999999999999999999999975210 0 11 12333211111 11
Q ss_pred HH------------------------HhhhCCcCCCccCC-----ccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCC
Q 003681 547 DA------------------------IMLHMKSYDSPADG-----KSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 547 d~------------------------I~~~i~~~d~l~~~-----~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD 596 (803)
+. ++..++..+..... ...+|.++++... +.+.+.+|+++||||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 11 11112221111111 1357777776554 455599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChh--hhhCccccccc
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNA 637 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~e--l~~l~~~~~~v 637 (803)
+..+..+. .+++.+.+.|.|||++||+.+ +.+..++.-.+
T Consensus 1052 ~~~a~~v~-~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1052 ARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 99988886 677778888999999999986 34555544333
No 359
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.48 E-value=2.6e-13 Score=142.01 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=52.8
Q ss_pred CccchHHHHHHHHHHHHh-C----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 562 GKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 562 ~~Stfs~em~~l~~iLa~-a----~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
....++.++++...+... + .+|+++|+|||++|+|+.....+. ..+..+.+ +.++|++||..+....+++.
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHhhCCEE
Confidence 345678888775544333 2 468999999999999999988886 56666655 78999999998877665543
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.4e-13 Score=134.50 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=103.7
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------cC------------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CG------------ 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------~G------------ 533 (803)
+.+.++++.| ++..-..|++| |++++|+|.+||||||||++|++-+...+ .|
T Consensus 7 L~V~~lsk~Y----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 7 LSVSGLSKLY----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred eeehhhhhhh----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 5677888887 34455778888 89999999999999999999998541110 00
Q ss_pred ---------ccc---cccc--------ccccc------------h----HHHhhhCCcC-CCccCCccchHHHHHHHHHH
Q 003681 534 ---------LMV---PAES--------ASIPY------------F----DAIMLHMKSY-DSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 534 ---------~~V---pa~~--------a~i~~------------~----d~I~~~i~~~-d~l~~~~Stfs~em~~l~~i 576 (803)
.+| |.+. +.++. . ..++.+..+. +.+.....+|+.+|++...|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 111 1110 01100 0 0112222211 22334457899999998877
Q ss_pred HHh-CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCc
Q 003681 577 VTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 577 La~-a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~l~ 631 (803)
... ++.|.|+++||||.|||..-.+.+. .+++.+ .+.|..++++|||+..+.+.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLL-DllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHH-HHHHHHHHhcCceEEEEechhHHHHHh
Confidence 666 8999999999999999998888887 666766 57799999999999888764
No 361
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=156.70 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=103.1
Q ss_pred eEEEeccCcccccc-------CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCccccccc
Q 003681 477 CLKMNGLSPYWFDA-------AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMVPAES 540 (803)
Q Consensus 477 ~i~l~~l~~~~~~~-------~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~~Vpa~~ 540 (803)
.+.++|+.+.|... .+...+++|||| |++++|+|++||||||+.|+|+|+.... ..|..+....
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 35678887766421 123577999999 9999999999999999999999998431 1111100000
Q ss_pred ----------ccccc----------------------------------hHHHhhhCCcCCC-ccCCccchHHHHHHHH-
Q 003681 541 ----------ASIPY----------------------------------FDAIMLHMKSYDS-PADGKSSFQVEMSEIR- 574 (803)
Q Consensus 541 ----------a~i~~----------------------------------~d~I~~~i~~~d~-l~~~~Stfs~em~~l~- 574 (803)
..+++ ++.++..++...+ +......||.+.++..
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva 439 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH
Confidence 00000 1112333333322 2333456677766543
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 575 ~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.+.+.+.+|+++|+|||++.||+.....+...+.+.-.+.|.|.||+|||+...+.
T Consensus 440 IARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 440 IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 34455999999999999999999999999855555556779999999999998764
No 362
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.1e-13 Score=150.75 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=101.8
Q ss_pred eEEEe--ccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------
Q 003681 477 CLKMN--GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 477 ~i~l~--~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------------------- 530 (803)
+++++ +++..| .+++++++|++| |+.++|+|+||||||||++.|+|+....
T Consensus 318 ~~ei~~~~l~~~y---~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 318 PIEISLENLSFRY---PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CceeeecceEEec---CCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 44444 655433 556699999999 8999999999999999999999987321
Q ss_pred hcCccccccccccc--chHHH---------------hhhC----------CcCCCccCCccchHHHHHH-HHHHHHhCCC
Q 003681 531 ICGLMVPAESASIP--YFDAI---------------MLHM----------KSYDSPADGKSSFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~a~i~--~~d~I---------------~~~i----------~~~d~l~~~~Stfs~em~~-l~~iLa~a~~ 582 (803)
+.-.+|++.+-.++ .-+++ .... |..-.+..+-+..|.+..+ +.-+.+...+
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 11223333221110 00111 1111 1111122233445665444 4444455899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
++++|+||||+++|.+....+. ..+..+.+ ++|+|++||.+.....++..-.+.++..
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~-~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l 532 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIIL-QALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRL 532 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHH-HHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCce
Confidence 9999999999999998877776 55555554 4899999999988877665544444443
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.45 E-value=3.1e-13 Score=139.57 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=53.6
Q ss_pred cCCccchHHHHHHHHHHHHh-C----------CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003681 560 ADGKSSFQVEMSEIRSIVTA-T----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 560 ~~~~Stfs~em~~l~~iLa~-a----------~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~ 628 (803)
.....+++.++++...+... + .+|+++|+|||++|+|+.....+. .+++.+.+.+.|+|++||++++.
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~itH~~~~~ 196 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVISHVEELK 196 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECchHHH
Confidence 34456778887765543332 3 367999999999999999888886 66677777789999999999876
Q ss_pred hC
Q 003681 629 SL 630 (803)
Q Consensus 629 ~l 630 (803)
..
T Consensus 197 ~~ 198 (213)
T cd03279 197 ER 198 (213)
T ss_pred Hh
Confidence 54
No 364
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.2e-13 Score=145.45 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHh--------------hhhcCccccccc---ccccchHHHhhhCCcCCCccCCcc--
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASL--------------LGICGLMVPAES---ASIPYFDAIMLHMKSYDSPADGKS-- 564 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~--------------laq~G~~Vpa~~---a~i~~~d~I~~~i~~~d~l~~~~S-- 564 (803)
.+++|.|++||||||++|+|+|+.. -+..|.++|.+. +++++.-++|.++++..|+..+..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 7999999999999999999999982 244567777754 556666778999988888765532
Q ss_pred -----------------------chHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEE
Q 003681 565 -----------------------SFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 619 (803)
Q Consensus 565 -----------------------tfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvI 619 (803)
++|.+-+|... .-+..+.|+|+|||||.+.||..-..+++ -.++.|. +.+..|+
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~IPIl 183 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYLERLRDEINIPIL 183 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCCCEE
Confidence 33444333332 23448999999999999999999888887 7777774 5688999
Q ss_pred EEccChh-hhhCcccccccccceeEE
Q 003681 620 VSTHLHG-IFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 620 ivTH~~e-l~~l~~~~~~v~~~~m~~ 644 (803)
++||.++ ++.++++..-+.++.+.+
T Consensus 184 YVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 184 YVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred EEecCHHHHHhhhheEEEecCCeEEe
Confidence 9999985 456777665555665543
No 365
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.45 E-value=1.6e-13 Score=175.72 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=56.7
Q ss_pred cchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccccccccc
Q 003681 564 SSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 564 Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~el~~l~~~~~~v~~ 639 (803)
..+|.+++|... +.+.+.+|+++||||||++||+.....+. ..++.+.+ .|.|+|++||+++....+++.-.+..
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 456777776554 44458999999999999999998888876 55666654 68999999999988776665433333
No 366
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3e-13 Score=152.80 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=105.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccc--------c
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA--------E 539 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa--------~ 539 (803)
.++++|++-.|- .+..++++|+|| |+-++|+|++||||||++..++|.....| .|..+.. .
T Consensus 336 ~l~~~~vsF~y~--~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecC--CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence 477788875541 234489999999 89999999999999999999998653222 2222211 0
Q ss_pred cccccchHHHhh------------------------hCCcCCC-----------ccCCccchHHHHHH-HHHHHHhCCCC
Q 003681 540 SASIPYFDAIML------------------------HMKSYDS-----------PADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 540 ~a~i~~~d~I~~------------------------~i~~~d~-----------l~~~~Stfs~em~~-l~~iLa~a~~p 583 (803)
.+.+++-..+|. ..+..+- +..+-..+|.+-++ +.-+....++.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 112222222221 1111110 11112244554443 33333337899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEE
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~ 644 (803)
+++||||||.|||+....+++..+.+++. |+|+|++||.....+..++...+.+++...
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie 552 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeee
Confidence 99999999999999999999866666554 789999999998877777766666665543
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.44 E-value=1.5e-13 Score=176.63 Aligned_cols=147 Identities=19% Similarity=0.119 Sum_probs=99.2
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----c--Ccccccccccc--cchHHHhh---------
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--GLMVPAESASI--PYFDAIML--------- 551 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~--G~~Vpa~~a~i--~~~d~I~~--------- 551 (803)
+++++|++| |++++|+|||||||||||++|+|+..... . -.|++++...+ ...++|..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 568999998 89999999999999999999999873221 1 13455543211 11122210
Q ss_pred --------------hCCcCC--CccCCccchHHHHHHHHHH-HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003681 552 --------------HMKSYD--SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 614 (803)
Q Consensus 552 --------------~i~~~d--~l~~~~Stfs~em~~l~~i-La~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~ 614 (803)
.+...+ .+.....++|.++++...+ .+.+.+|+++|||||++|+|+..+..+...++..+. +
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~ 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c
Confidence 000001 1122235678888775544 444899999999999999999999999866665554 4
Q ss_pred CCEEEEEccChhhhhCcccccccccce
Q 003681 615 GCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 615 g~tvIivTH~~el~~l~~~~~~v~~~~ 641 (803)
|+|+|++||+++....+++.-.+.++.
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~ 624 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGV 624 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCE
Confidence 899999999998877655444444443
No 368
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.41 E-value=9.1e-13 Score=154.65 Aligned_cols=160 Identities=13% Similarity=0.158 Sum_probs=106.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh---------------------hh
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GI 531 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l---------------------aq 531 (803)
.+.+++++..| .+++.+++|+|| |+.++|+|||||||||+++.+.++... .+
T Consensus 328 ~I~f~~vsf~y---~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 328 SIEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred eEEEEEEEEEc---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 47888876544 346799999999 899999999999999999999998722 11
Q ss_pred cCccccccccccc--chHHH------------------------hhhC--CcCCCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 532 CGLMVPAESASIP--YFDAI------------------------MLHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~--~~d~I------------------------~~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
.+ +||++...+. ..+++ ..++ |..-.+..+-..+|.+.+|... +.+.+.+
T Consensus 405 I~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 405 IG-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred cc-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 22 4554332111 01111 1111 1111112223467777766544 4444899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
|+++||||||+++|+.....+..++. .+. ++.|+|+++|.+.....+++.-.+..+.+
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~-~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i 541 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALK-KLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRI 541 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHH-HHh-cCCEEEEEeccHhHHHhCCEEEEEECCEE
Confidence 99999999999999999888875554 444 45799999999988777765555555543
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.41 E-value=6.6e-13 Score=171.13 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=95.2
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-------hcCcccccccccc--cchHHHh---------
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI--PYFDAIM--------- 550 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-------q~G~~Vpa~~a~i--~~~d~I~--------- 550 (803)
++.+++|++| |++++|+|||||||||||++|+|..... ..-.++|++...+ ...+++.
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 4679999998 8999999999999999999999986321 1223455543211 1111111
Q ss_pred --------------hhC--CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 003681 551 --------------LHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 551 --------------~~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~ 613 (803)
..+ +....+......+|.++++... +.+.+.+|+++|||||+++||+..+..+...++....
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~- 830 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL- 830 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-
Confidence 111 1111222334567778776554 3444899999999999999999988888765554333
Q ss_pred cCCEEEEEccChhhhhCccc
Q 003681 614 IGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 614 ~g~tvIivTH~~el~~l~~~ 633 (803)
.|+|+|++||+.++...+++
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~ 850 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADY 850 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCE
Confidence 48999999999998775543
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=6.5e-13 Score=128.83 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=101.1
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----------hcCccccccc---ccccchHHHhhhC
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------ICGLMVPAES---ASIPYFDAIMLHM 553 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----------q~G~~Vpa~~---a~i~~~d~I~~~i 553 (803)
++...+-++++ |+++-|.||+|||||||+.-++|.+--. +.--.+|+.. +.+.+.+-+|.++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 46677888887 8999999999999999999999976211 1112345543 3445556678888
Q ss_pred CcCCCccCCcc------------------------------chHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHH
Q 003681 554 KSYDSPADGKS------------------------------SFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 554 ~~~d~l~~~~S------------------------------tfs~em~~l~~iL-a~a~~psLLLLDEP~sGLD~~~g~~ 602 (803)
++.+|+...+. +.+.+.+....++ +.+..|+++|||||+|.||..-+..
T Consensus 93 sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~q 172 (213)
T COG4136 93 SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172 (213)
T ss_pred ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHH
Confidence 88877654321 2233333222222 2378999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 603 IAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 603 L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.-.-+...+...|..++.+|||++-+.
T Consensus 173 fR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 173 FRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHhcCCCeEEEecccccCC
Confidence 888888888889999999999988765
No 371
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.40 E-value=5.9e-13 Score=136.92 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=79.9
Q ss_pred ccCC-CcEEEEEcCCCCCchHHHHHHHHhH----hhhhcCc-------ccccccccc---cchH-----HHhhhCCcCCC
Q 003681 499 TVDM-QSLFLLTGPNGGGKSSLLRSICAAS----LLGICGL-------MVPAESASI---PYFD-----AIMLHMKSYDS 558 (803)
Q Consensus 499 dVsL-Gei~~ItGPNGsGKSTLLr~Iagl~----~laq~G~-------~Vpa~~a~i---~~~d-----~I~~~i~~~d~ 558 (803)
+++| ..+++|+||||+||||||++|.... .....+. ..+...+.+ .+.. .+...+...++
T Consensus 17 ~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~ 96 (204)
T cd03240 17 EIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILEN 96 (204)
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhc
Confidence 3455 3499999999999999999996433 1111000 001111111 0000 00111112222
Q ss_pred c------------cCCccchHHHHHHHH-----HHH--HhCCCCeEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhc-CCE
Q 003681 559 P------------ADGKSSFQVEMSEIR-----SIV--TATTSRSLVLIDEICRGTETAKGT-CIAGSIIETLDNI-GCL 617 (803)
Q Consensus 559 l------------~~~~Stfs~em~~l~-----~iL--a~a~~psLLLLDEP~sGLD~~~g~-~L~~alle~L~~~-g~t 617 (803)
+ ......++.++++.. ..+ +.+.+|+++|+|||++++|+.... .+. .++..+.+. +.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~ 175 (204)
T cd03240 97 VIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQ 175 (204)
T ss_pred eeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCE
Confidence 1 223346666776642 122 337899999999999999999888 776 666666655 889
Q ss_pred EEEEccChhhhhCcc
Q 003681 618 GIVSTHLHGIFSLPL 632 (803)
Q Consensus 618 vIivTH~~el~~l~~ 632 (803)
+|++||++++...++
T Consensus 176 iiiitH~~~~~~~~d 190 (204)
T cd03240 176 LIVITHDEELVDAAD 190 (204)
T ss_pred EEEEEecHHHHhhCC
Confidence 999999998765443
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.40 E-value=4.9e-13 Score=172.38 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=103.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-------cCcccccccccc--
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASI-- 543 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-------~G~~Vpa~~a~i-- 543 (803)
.+.+++++..|- ...+++++|+++ |++++|+||||||||||+++|+|...... .-.++|++...+
T Consensus 636 ~i~~~~~~~~~~--~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 636 SITVHNATFTWA--RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred cEEEEEeEEEcC--CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 477777765551 123579999998 89999999999999999999999863221 113555543211
Q ss_pred cchHHHh--------------h---------hC--CcCCCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 544 PYFDAIM--------------L---------HM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 544 ~~~d~I~--------------~---------~i--~~~d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
...++|. . .+ +....+......+|.++++... +.+...+|+++|||||++++|+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 1111111 0 00 0000122233567888776554 3344899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCcccc
Q 003681 598 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 598 ~~g~~L~~alle~L-~~~g~tvIivTH~~el~~l~~~~ 634 (803)
.....+...+.+.. ...++|+|++||+.+....+++.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~i 831 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVI 831 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEE
Confidence 99998886665421 23478999999999887665543
No 373
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=5.8e-13 Score=162.69 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=105.3
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc-----Ccccc--------c
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVP--------A 538 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~-----G~~Vp--------a 538 (803)
..++++|++..|. ...+..|+++++| |+.++|+|||||||||+++.+.++.-.... |..+. .
T Consensus 349 g~ief~nV~FsYP-sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYP-SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred cceEEEEEEecCC-CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 3577888875553 2345689999998 899999999999999999999998722111 11110 0
Q ss_pred ccccccchHHHhhhCCcCCCccCC------------------------------------ccchHHHHHHHHH-HHHhCC
Q 003681 539 ESASIPYFDAIMLHMKSYDSPADG------------------------------------KSSFQVEMSEIRS-IVTATT 581 (803)
Q Consensus 539 ~~a~i~~~d~I~~~i~~~d~l~~~------------------------------------~Stfs~em~~l~~-iLa~a~ 581 (803)
..+.+.+.+ ++...+..+|+..+ -..++.+.+|... +.+.+.
T Consensus 428 ~iglV~QeP-vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 428 QIGLVSQEP-VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred hcCeeeech-hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 011112211 11111222222111 1235667666443 344489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEE
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~ 644 (803)
+|++|||||||++||++....+ +..++... .|.|+|+++|.+...+.++....++.+.+..
T Consensus 507 ~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 507 NPKILLLDEATSALDAESERVV-QEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCEEEecCcccccCHHHHHHH-HHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 9999999999999999876555 46666554 4789999999999888777665555555443
No 374
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=1.3e-12 Score=154.67 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=98.4
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hcCcccccccccccc---
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIPY--- 545 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~G~~Vpa~~a~i~~--- 545 (803)
.+.++++|+. |++++|.||+||||||||++++|-..-. +.-.||+++...++.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 4789999998 8999999999999999999999976311 111233333221111
Q ss_pred ------------------------hHHHhhhCCcCCCccCCc-----cchH-HHHHHHHHHHHhCCCCeEEEEeCCCCCC
Q 003681 546 ------------------------FDAIMLHMKSYDSPADGK-----SSFQ-VEMSEIRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 546 ------------------------~d~I~~~i~~~d~l~~~~-----Stfs-~em~~l~~iLa~a~~psLLLLDEP~sGL 595 (803)
++.+...++..+.-..-. .-.+ .|.++++.++..+++|+++++||||+||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 112233333221100000 1122 3556677777789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEccCh--hhhhCcccccccccce
Q 003681 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKA 641 (803)
Q Consensus 596 D~~~g~~L~~alle~L~~~g~tvIivTH~~--el~~l~~~~~~v~~~~ 641 (803)
|...+..+. .+++.+++.|+|||++=|.+ ++..+.++.--...+.
T Consensus 202 DS~sA~~vv-~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 202 DSFSALQVV-QLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred chhhHHHHH-HHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 999999997 78888877799999999997 4555554433333333
No 375
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=7.2e-13 Score=171.17 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------cCccccccccccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP 544 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------~G~~Vpa~~a~i~ 544 (803)
.+.+++++-.|- ...++++++|+++ |+.++|+||+|||||||+++|.|...... .-.++|++...+.
T Consensus 614 ~I~~~nvsf~y~-~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWD-SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEcc-CCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 477888765552 1124679999999 89999999999999999999999875433 1134555432110
Q ss_pred --chHHHh-----------------------hhCCcCC--CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCC
Q 003681 545 --YFDAIM-----------------------LHMKSYD--SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 545 --~~d~I~-----------------------~~i~~~d--~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD 596 (803)
..++|. ..+...+ .+...-..+|++.++... +.+...+|+++|||||++++|
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 111111 1111111 111222457777666443 444489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~ 635 (803)
+..+..+...++..+. +++|+|++||..+....+++.-
T Consensus 773 ~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii 810 (1622)
T PLN03130 773 AHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRII 810 (1622)
T ss_pred HHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEE
Confidence 9998888766666543 4799999999998877665443
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.38 E-value=3.2e-12 Score=136.42 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=57.3
Q ss_pred ccCCccchHHHHHHHHHHHHh-CC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 559 PADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 559 l~~~~Stfs~em~~l~~iLa~-a~---~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+....+++|.++++...+... +. +|+++||||||+|||+.+...+. .+++.+.+.|.|+|++||++++...++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 344556778888776554443 44 37999999999999999998886 677777778999999999999876544
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.38 E-value=3e-12 Score=164.89 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=104.8
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhc--------Cccccccccccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--------GLMVPAESASIP 544 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~--------G~~Vpa~~a~i~ 544 (803)
.+.+++++-.|- ...++++++|+|| |+.++|+||+|||||||++.|.|....... -.++|++...+.
T Consensus 614 ~I~~~~vsF~y~-~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWD-SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcC-CCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 477888765552 1124679999999 899999999999999999999998743321 134555432111
Q ss_pred --chHHHh-----------------------hhCCcCC--CccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCC
Q 003681 545 --YFDAIM-----------------------LHMKSYD--SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 545 --~~d~I~-----------------------~~i~~~d--~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD 596 (803)
..++|. ..+...+ .+...-..+|++.++... +.+...+|+++||||||+++|
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 111111 1111111 111222356777666443 344489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccc
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 637 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v 637 (803)
+..+..+...++.... .++|+|++||..+....+++.-.+
T Consensus 773 ~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L 812 (1495)
T PLN03232 773 AHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILV 812 (1495)
T ss_pred HHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEE
Confidence 9998888777666543 578999999999887666544333
No 378
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.37 E-value=1.7e-12 Score=165.97 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=93.3
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh---h------hhcC--------------ccccccccccc-
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L------GICG--------------LMVPAESASIP- 544 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~---l------aq~G--------------~~Vpa~~a~i~- 544 (803)
.+.+++|+++ |++++|+||||||||||||+|+|... . ...| .+++++...++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3567888888 89999999999999999999999741 0 0011 22333211111
Q ss_pred --chHH-----------------------------HhhhCCcCCCccC-----CccchHHHHHHHHH-HHHhCCCCeEEE
Q 003681 545 --YFDA-----------------------------IMLHMKSYDSPAD-----GKSSFQVEMSEIRS-IVTATTSRSLVL 587 (803)
Q Consensus 545 --~~d~-----------------------------I~~~i~~~d~l~~-----~~Stfs~em~~l~~-iLa~a~~psLLL 587 (803)
..+. ++..++..+.... ....+|.++++... +.+.+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 0011 1112222211110 12345666665444 445589999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccCh--hhhhCcccccccccce
Q 003681 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYKA 641 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~--el~~l~~~~~~v~~~~ 641 (803)
+||||+|||+..+..+. .+++.+.+ .|.|+|+++|+. ++.++.++.-.+..+.
T Consensus 233 lDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~ 288 (1394)
T TIGR00956 233 WDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288 (1394)
T ss_pred EeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCe
Confidence 99999999999999997 67777765 589999999995 3555555443333333
No 379
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=6.9e-13 Score=130.95 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=105.4
Q ss_pred eEEEeccCcccc-ccCCC--ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh-------hhcCccc---ccc
Q 003681 477 CLKMNGLSPYWF-DAAEG--SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGLMV---PAE 539 (803)
Q Consensus 477 ~i~l~~l~~~~~-~~~~~--~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l-------aq~G~~V---pa~ 539 (803)
++.++++.+.+. +..+| -+|+++++| |+++++-||+|+||||+||++-+.... .+.|..+ .++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 355666665542 22233 368899998 899999999999999999999887621 2222221 010
Q ss_pred -----------cccccchHH-------------------------------HhhhCCcCCCc-cCCccchHHHHHHHHHH
Q 003681 540 -----------SASIPYFDA-------------------------------IMLHMKSYDSP-ADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 540 -----------~a~i~~~d~-------------------------------I~~~i~~~d~l-~~~~Stfs~em~~l~~i 576 (803)
.+++++|-+ +++++...+.+ ....+||+.+-+|..+|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 012222222 34444433322 33457999988887776
Q ss_pred HHh-CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 577 VTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~-a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
... +.+-.++||||||+.||..++..+. .++...+.+|+.+|=+-||.+.-+
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVv-eli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVV-ELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHH-HHHHHHHhcCceEEEeeccHHHHH
Confidence 554 8999999999999999999998886 778888889999999999987653
No 380
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.36 E-value=4e-12 Score=142.78 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--------------------hhhc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--------------------laq~ 532 (803)
.+.++++.- .....+++++++++| |+.++|+||+|||||||.|+|.|+.. +.+.
T Consensus 334 ~L~Ve~l~~--~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 334 ALSVERLTA--APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred eeeEeeeee--cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc
Confidence 466776642 112346799999999 89999999999999999999999862 2233
Q ss_pred Ccccccccccccc-hHHHhhhCC---------------------------cCCCccCCccchHHHHHHHH-HHHHhCCCC
Q 003681 533 GLMVPAESASIPY-FDAIMLHMK---------------------------SYDSPADGKSSFQVEMSEIR-SIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~~-~d~I~~~i~---------------------------~~d~l~~~~Stfs~em~~l~-~iLa~a~~p 583 (803)
-.|.|++...++- +.+-..+++ -+-.+-.+-+++|.+.+|.. -+.+.-.+|
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 3455664322210 001111222 11122233456777766644 344447999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
.|++||||-++||..--.++. .-+..++++|+++|++||-.......++.
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~-~Ai~~~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALA-AAILAAKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred cEEEecCCCCCcchhHHHHHH-HHHHHHHHcCCEEEEEecCHHHHhhccee
Confidence 999999999999998777776 55566788899999999999887665543
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.36 E-value=1.5e-12 Score=166.48 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=53.9
Q ss_pred hHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEccCh--hhhhCcccccccccce
Q 003681 566 FQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYKA 641 (803)
Q Consensus 566 fs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~-~g~tvIivTH~~--el~~l~~~~~~v~~~~ 641 (803)
+|.++++... +.+.+.+|+++++||||+|||+.....+. .+++.+.+ .|.|+|+++|+. +..++.++...+..++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 4444444332 33448899999999999999999999997 66666654 689999999985 5556665544444444
Q ss_pred e
Q 003681 642 M 642 (803)
Q Consensus 642 m 642 (803)
+
T Consensus 416 i 416 (1470)
T PLN03140 416 I 416 (1470)
T ss_pred E
Confidence 3
No 382
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.36 E-value=4e-12 Score=130.26 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=79.9
Q ss_pred cCC-CcEEEEEcCCCCCchHHHHHHHHhHhhh----hcCc----cccc--cccc--------------ccch--HHHhhh
Q 003681 500 VDM-QSLFLLTGPNGGGKSSLLRSICAASLLG----ICGL----MVPA--ESAS--------------IPYF--DAIMLH 552 (803)
Q Consensus 500 VsL-Gei~~ItGPNGsGKSTLLr~Iagl~~la----q~G~----~Vpa--~~a~--------------i~~~--d~I~~~ 552 (803)
++| ..+.+|+||||+||||+|..|.....-. ..|. ++.. ..+. .... +.+..-
T Consensus 17 l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (198)
T cd03276 17 IEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSF 96 (198)
T ss_pred EecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHH
Confidence 445 3578999999999999999997543110 0010 0000 0000 0000 111111
Q ss_pred CCcCCCccCCccchHHHHHHHHHHH-Hh----CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEccCh
Q 003681 553 MKSYDSPADGKSSFQVEMSEIRSIV-TA----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHLH 625 (803)
Q Consensus 553 i~~~d~l~~~~Stfs~em~~l~~iL-a~----a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~--~g~tvIivTH~~ 625 (803)
+...+.......+++.++++...+. +. +.+|+++|+|||++|+|+.....+...+.+...+ .+.++|++||++
T Consensus 97 l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 97 LTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred hccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 1112333445567888888755533 22 5899999999999999999988887544444343 246899999999
Q ss_pred hhhhC
Q 003681 626 GIFSL 630 (803)
Q Consensus 626 el~~l 630 (803)
+.+..
T Consensus 177 ~~i~~ 181 (198)
T cd03276 177 SGLAS 181 (198)
T ss_pred ccccc
Confidence 87653
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.35 E-value=7.2e-12 Score=141.53 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=97.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccccc-----------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS----------- 542 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~----------- 542 (803)
+.+.|+...| .++..++++++| ++.++++||||+|||||||++.|.+.. ..|...|.....
T Consensus 390 i~~~nv~F~y---~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 390 IMVQNVSFGY---SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred EEEeccccCC---CCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhHhh
Confidence 4555654332 344478888888 588999999999999999999997621 122211111111
Q ss_pred --------------------ccchHHHhhhCCcC-CCccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 543 --------------------IPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 543 --------------------i~~~d~I~~~i~~~-d~l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
...+..+..++|.. +......+++|.+++.... +...++.|.||||||||+|+|...-
T Consensus 466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ti 545 (614)
T KOG0927|consen 466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETI 545 (614)
T ss_pred cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhH
Confidence 11223455566654 4444566788888776544 4444899999999999999999876
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.+++ +.+.+...++|++|||..+...
T Consensus 546 d~la----eaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 546 DALA----EAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred HHHH----HHHhccCCceeeeechhhHHHH
Confidence 5555 5556666789999999887653
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.35 E-value=3.5e-12 Score=134.71 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHHh-C----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 564 SSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 564 Stfs~em~~l~~iLa~-a----~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
..++.++++...+... + .+|+++|+|||++|+|+.....+. .++..+.+.|.++|++||+.++...++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccCCcEEEEEECCHHHHhhCC
Confidence 3455666654443332 3 358999999999999999988886 566667666899999999988876654
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=4.9e-12 Score=133.76 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=52.3
Q ss_pred ccchHHHHHHHHHHHHh-C----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 563 KSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 563 ~Stfs~em~~l~~iLa~-a----~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
...++.++++...+... + .+|+++|+|||++|+|+.....+. .+++.+. .|.++|++||..+..+.+++.
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 34566677665443322 2 678999999999999999988886 5666664 488999999998888776544
No 386
>PLN03232 ABC transporter C family member; Provisional
Probab=99.34 E-value=1.7e-11 Score=158.08 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=105.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--------------------hhc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--------------------aq~ 532 (803)
.++++|++-.|. ++.++|++|+|| |+.++|+|++|||||||+++|.++... .+.
T Consensus 1234 ~I~f~nVsf~Y~--~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYR--PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEEC--CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 488888875551 223579999999 899999999999999999999998621 112
Q ss_pred Cccccccccccc--chH-----------HH---hhhCCc-----------CCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 533 GLMVPAESASIP--YFD-----------AI---MLHMKS-----------YDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d-----------~I---~~~i~~-----------~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
-.+||++...+. ..+ .+ ....+. ...+..+-+.+|.+.+|...+ .+.+.+|+
T Consensus 1312 i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1312 LSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred cEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 234555532211 001 11 111111 111222334678887775543 33489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
++||||||+++|+.....|. ..++... .++|+|+++|.++....+++.-.+..+++
T Consensus 1392 ILILDEATSaLD~~Te~~Iq-~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQ-RTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred EEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999998766665 4444442 47999999999988776655444444433
No 387
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.33 E-value=4.7e-12 Score=162.36 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=53.9
Q ss_pred cchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcccccc
Q 003681 564 SSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKN 636 (803)
Q Consensus 564 Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-~~g~tvIivTH~~el~~l~~~~~~ 636 (803)
..+|.+.+|... +.+.+.+|++||||||||+||+.....+. ..++.+. ..++|+|++||.+...+.+++.-.
T Consensus 1357 ~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence 356777666544 34448999999999999999998877776 4445554 358999999999988777665433
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.9e-12 Score=142.94 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=87.2
Q ss_pred CCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh---h---hhcCcccccccc----cccch-----------
Q 003681 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L---GICGLMVPAESA----SIPYF----------- 546 (803)
Q Consensus 492 ~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~---l---aq~G~~Vpa~~a----~i~~~----------- 546 (803)
+++.++++.++ |+-++|+|+||+|||||||+|+--.+ . -..|.++++... .....
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 57788888776 89999999999999999999987210 0 011333332110 00000
Q ss_pred ----HH----HhhhCCcCC-CccCCccchHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003681 547 ----DA----IMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 616 (803)
Q Consensus 547 ----d~----I~~~i~~~d-~l~~~~Stfs~em~~-l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~ 616 (803)
.. ++..+|..+ -......+||.+.+- ++.+-|...+|+|+||||||+.||...-.. +-++|...+.
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~W----Le~yL~t~~~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW----LENYLQTWKI 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHH----HHHHHhhCCc
Confidence 11 222333322 223455677777653 233334478999999999999999976333 3467777789
Q ss_pred EEEEEccChhhhh
Q 003681 617 LGIVSTHLHGIFS 629 (803)
Q Consensus 617 tvIivTH~~el~~ 629 (803)
|+|++|||..+.+
T Consensus 247 T~liVSHDr~FLn 259 (582)
T KOG0062|consen 247 TSLIVSHDRNFLN 259 (582)
T ss_pred eEEEEeccHHHHH
Confidence 9999999988764
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.31 E-value=6.9e-12 Score=162.22 Aligned_cols=163 Identities=13% Similarity=0.118 Sum_probs=107.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------hc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q~ 532 (803)
.++++|++-.|. .+..+|++|+|| |+.++|+|++|||||||+++|.++.... +.
T Consensus 1237 ~I~f~nVsf~Y~--~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYR--PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeC--CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 588888875552 223579999999 8999999999999999999999986221 12
Q ss_pred Cccccccccccc--chHH-----------Hh---hhC-----------CcCCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 533 GLMVPAESASIP--YFDA-----------IM---LHM-----------KSYDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~-----------I~---~~i-----------~~~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
-.+||++...+. ..++ +. ... |..-.+..+-..+|.|.+|...+ .+.+.+|+
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 234555432211 0011 10 011 11111222334678887776543 33489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~ 643 (803)
++||||||+++|+..-..|. ..++... .++|+|+++|.++....+++.-.+..+.+.
T Consensus 1395 ILILDEATSaLD~~Te~~Iq-~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQ-KTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 99999999999998877665 4444443 479999999999988776665555555443
No 390
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.31 E-value=1e-11 Score=125.26 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHhHhhhhcC-------------cccccccccccch-HH-HhhhCCcCCCccCCccchHHH
Q 003681 505 LFLLTGPNGGGKSSLLRSICAASLLGICG-------------LMVPAESASIPYF-DA-IMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 505 i~~ItGPNGsGKSTLLr~Iagl~~laq~G-------------~~Vpa~~a~i~~~-d~-I~~~i~~~d~l~~~~Stfs~e 569 (803)
+.+|+||||+|||++|..|+-...-.... ....+..+.+... +. ++.-+. .++.. -++.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-~~~~~----~LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-GKVEQ----ILSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecC-CcCcc----cCCHH
Confidence 89999999999999999997654110000 0001111111110 00 111111 11111 15666
Q ss_pred HHHHHHHHHh-----CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 570 MSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 570 m~~l~~iLa~-----a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
+++...+... ..+|+++|+|||++++|+.....+. ..+..+.+.|.++|++||+.+....+++
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHhhCCe
Confidence 6654443322 3789999999999999999988887 5666666668999999999988765443
No 391
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.31 E-value=8.6e-12 Score=160.62 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=100.7
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-------------------hhhcC
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICG 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-------------------laq~G 533 (803)
.+.+++++-.|- .+...|++|++| |+.++|+|++|||||||+++|.++.. +.+.-
T Consensus 1217 ~I~f~nVs~~Y~--~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYT--EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeC--CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 478888875552 234689999999 89999999999999999999999862 01111
Q ss_pred ccccccccccc--chHHH--------------hhhCCcC-----------CCccCCccchHHHHHHHHH-HHHhCCCCeE
Q 003681 534 LMVPAESASIP--YFDAI--------------MLHMKSY-----------DSPADGKSSFQVEMSEIRS-IVTATTSRSL 585 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I--------------~~~i~~~-----------d~l~~~~Stfs~em~~l~~-iLa~a~~psL 585 (803)
.++|++...+. ..+++ ....+.. -.+..+-..+|.+.+|+.. +.+.+.+|++
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 23444432211 00111 1111111 1111222357888777554 3344899999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
|||||||+++|+..-..|. ..++... .++|+|++||.++....+++.
T Consensus 1375 LlLDEaTS~lD~~Te~~I~-~~L~~~~-~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIR-KTLKQSF-SNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhCCEE
Confidence 9999999999998877775 4444432 369999999999877655543
No 392
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.30 E-value=4.4e-11 Score=154.56 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=104.2
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh--------------------h
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------I 531 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la--------------------q 531 (803)
..++++|++-.|- .+...|++|+|| |+.++|+|++|||||||+++|.++.... .
T Consensus 1283 g~I~f~nVsf~Y~--~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR--EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeC--CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 3588888875552 123579999999 8999999999999999999999986221 1
Q ss_pred cCccccccccccc--chHH-----------H---hhhCCc-----------CCCccCCccchHHHHHHHHH-HHHhCCCC
Q 003681 532 CGLMVPAESASIP--YFDA-----------I---MLHMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSR 583 (803)
Q Consensus 532 ~G~~Vpa~~a~i~--~~d~-----------I---~~~i~~-----------~d~l~~~~Stfs~em~~l~~-iLa~a~~p 583 (803)
.-.+||++...+. ..++ + ....+. .-.+..+-..+|.+.+|+.. +.+.+.+|
T Consensus 1361 ~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred cCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 2234555432211 0001 1 111111 11112223567888777554 33448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
+++||||||+++|+..-..|. ..++... .++|+|+++|.++....+++.-.+..+
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq-~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G 1495 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQ-STIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKG 1495 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999998766665 4444432 479999999999887766544333333
No 393
>PTZ00243 ABC transporter; Provisional
Probab=99.30 E-value=9.8e-12 Score=160.49 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=104.9
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--------------------hhc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--------------------aq~ 532 (803)
.|.++|++-.|. .+...|++|+|| |+.++|+|++|||||||+++|.++... .+.
T Consensus 1308 ~I~f~nVsf~Y~--~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYR--EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeC--CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 478888765542 123469999999 899999999999999999999998722 122
Q ss_pred Cccccccccccc--chHHH--------------hhhCCcCC-----------CccCCccchHHHHHHHHHHHH-hCCC-C
Q 003681 533 GLMVPAESASIP--YFDAI--------------MLHMKSYD-----------SPADGKSSFQVEMSEIRSIVT-ATTS-R 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I--------------~~~i~~~d-----------~l~~~~Stfs~em~~l~~iLa-~a~~-p 583 (803)
-.+||++...+. ..++| ....+..+ .+..+-+.+|.+.+|...+.+ .+.+ |
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred ceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 234555532221 01111 11111111 111223567888877654443 3664 8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m 642 (803)
++|||||||+++|+..-..|. ..++... .++|+|+++|.++....+++.-.+..+.+
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq-~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQ-ATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHH-HHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEE
Confidence 999999999999998877775 4444432 36999999999988777665544444433
No 394
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.1e-11 Score=140.83 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=99.4
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcCc------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGL------------ 534 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G~------------ 534 (803)
..++++|++..| ....+..|++|++| |++++|+|||||||||+...+-.+.... ..|.
T Consensus 464 G~IeF~~VsFaY-P~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAY-PTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred ceEEEEEeeeec-CCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 468888887555 23456789999999 9999999999999999999998876211 1121
Q ss_pred ---ccccccccc--cchHHHh------------------------hhCCcC--CCccCCccchHHHHHHHHH-HHHhCCC
Q 003681 535 ---MVPAESASI--PYFDAIM------------------------LHMKSY--DSPADGKSSFQVEMSEIRS-IVTATTS 582 (803)
Q Consensus 535 ---~Vpa~~a~i--~~~d~I~------------------------~~i~~~--d~l~~~~Stfs~em~~l~~-iLa~a~~ 582 (803)
.|.++.-.+ .+.++|. ..+... -..-..-+..+.+.+|... +.|.+.+
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred HeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence 222222111 0111111 111100 0011112356667666443 3444899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 583 psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
|.++||||-||+||.+.-..+ +..+..+.+ +.|||++.|.+...+.++..
T Consensus 623 P~VLILDEATSALDaeSE~lV-q~aL~~~~~-~rTVlvIAHRLSTV~~Ad~I 672 (716)
T KOG0058|consen 623 PRVLILDEATSALDAESEYLV-QEALDRLMQ-GRTVLVIAHRLSTVRHADQI 672 (716)
T ss_pred CCEEEEechhhhcchhhHHHH-HHHHHHhhc-CCeEEEEehhhhHhhhccEE
Confidence 999999999999999765444 455555544 48999999998888776643
No 395
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.23 E-value=9.2e-12 Score=118.54 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=60.6
Q ss_pred eeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh--------------------cCccccccccccc--------
Q 003681 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPAESASIP-------- 544 (803)
Q Consensus 497 lndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq--------------------~G~~Vpa~~a~i~-------- 544 (803)
++++++ |++++|+||||||||||+++|+|...... ...+++++.....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356666 89999999999999999999999873211 1112232211110
Q ss_pred ---chHHHhhhCCcCCC----ccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCC
Q 003681 545 ---YFDAIMLHMKSYDS----PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 593 (803)
Q Consensus 545 ---~~d~I~~~i~~~d~----l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~s 593 (803)
....++..++..+. +......++.++++... +.+.+.+|+++||||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 11223334443332 22333778888777554 445589999999999996
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.23 E-value=8.2e-12 Score=123.91 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=78.5
Q ss_pred cCCCcEEEEEcCCCCCchHHHHHHHHhHhh----hhcCc---------------cccccc---cccc-------------
Q 003681 500 VDMQSLFLLTGPNGGGKSSLLRSICAASLL----GICGL---------------MVPAES---ASIP------------- 544 (803)
Q Consensus 500 VsLGei~~ItGPNGsGKSTLLr~Iagl~~l----aq~G~---------------~Vpa~~---a~i~------------- 544 (803)
++-|+++-++||||+||||||-.++|+... ...|. |..+.. ..++
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~ 101 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT 101 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence 444899999999999999999999998611 11111 111110 0011
Q ss_pred ---chHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh-------C-CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 003681 545 ---YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-------T-TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 545 ---~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-------a-~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~ 613 (803)
..+.|...++..|.+-...+.++.+-=+...+.+. + ....|+|+|||.+++|.....++ ..+++.+..
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~ 180 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQ 180 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHh
Confidence 11223333333344433333333321111111111 1 23489999999999999877776 599999999
Q ss_pred cCCEEEEEccChhhh
Q 003681 614 IGCLGIVSTHLHGIF 628 (803)
Q Consensus 614 ~g~tvIivTH~~el~ 628 (803)
.|.+||+++||++-.
T Consensus 181 ~G~~vims~HDLNhT 195 (248)
T COG4138 181 QGLAIVMSSHDLNHT 195 (248)
T ss_pred CCcEEEEeccchhhH
Confidence 999999999998653
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.22 E-value=4.4e-11 Score=124.04 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHHHH---h--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-C-CEEEEEccChhh
Q 003681 563 KSSFQVEMSEIRSIVT---A--TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-G-CLGIVSTHLHGI 627 (803)
Q Consensus 563 ~Stfs~em~~l~~iLa---~--a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~-g-~tvIivTH~~el 627 (803)
...++.+++++..+.. + +.+|+++|+|||++|+|+.....+. .++..+.+. | .++|++||++..
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~ 194 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLP 194 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhcc
Confidence 4567888887644322 2 6899999999999999999999887 555555544 5 579999998643
No 398
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=129.67 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=94.9
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--------------------hhh
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGI 531 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--------------------laq 531 (803)
..++++|++.. ...+++|+.|||| |+.++|+||+|+||||+||.+-.+.- +.+
T Consensus 536 G~i~fsnvtF~---Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 536 GKIEFSNVTFA---YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred CeEEEEEeEEe---cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 45788887744 4678999999999 89999999999999999999987651 111
Q ss_pred cCcccccccccccchHHHhhh-----CCcCC--------------Cc------------cCCccchHHHHHH-HHHHHHh
Q 003681 532 CGLMVPAESASIPYFDAIMLH-----MKSYD--------------SP------------ADGKSSFQVEMSE-IRSIVTA 579 (803)
Q Consensus 532 ~G~~Vpa~~a~i~~~d~I~~~-----i~~~d--------------~l------------~~~~Stfs~em~~-l~~iLa~ 579 (803)
....||++...+. |.|+.. .+..+ .+ +.++ ..+.+-+| .+.+...
T Consensus 613 ~IGVVPQDtvLFN--dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 613 SIGVVPQDTVLFN--DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTI 689 (790)
T ss_pred hcCcccCcceeec--ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHH
Confidence 1223455432110 111111 11100 00 0111 22333333 3333334
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+..|++++|||.||+||+..-.+|- +-+..+.. +.|.|++-|.+.-.-.++
T Consensus 690 LK~P~iIlLDEATSALDT~tER~IQ-aaL~rlca-~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAIQ-AALARLCA-NRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHHH-HHHHHHhc-CCceEEEeeeehheeccc
Confidence 8999999999999999999888885 66676655 567888889766554444
No 399
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.18 E-value=6.6e-11 Score=130.00 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=105.8
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh----------hhcCc---------
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------GICGL--------- 534 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l----------aq~G~--------- 534 (803)
+.++|++-.+....+...+.+++|| |+.++|+|.+|||||...+.|++++-- ...|.
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 5666776555444456788999999 899999999999999999999998711 00110
Q ss_pred ----------ccccccc-cccch----H----------------------HHhhhCCcCCC---ccCCccchHHHHHH-H
Q 003681 535 ----------MVPAESA-SIPYF----D----------------------AIMLHMKSYDS---PADGKSSFQVEMSE-I 573 (803)
Q Consensus 535 ----------~Vpa~~a-~i~~~----d----------------------~I~~~i~~~d~---l~~~~Stfs~em~~-l 573 (803)
.+.++.. .+... . .++...+..+- +......+|.+.++ .
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 1112210 00000 0 12223333221 11222345566555 3
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Ccccccccccce
Q 003681 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 574 ~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~~-l~~~~~~v~~~~ 641 (803)
..+++.+++|+|+|.||||..||..-...|. .+++.| .+.|..++|+|||+.+.. ++++...+..+.
T Consensus 167 MIAMALan~P~lLIADEPTTALDVtvQaQIL-~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 167 MIAMALANEPDLLIADEPTTALDVTVQAQIL-DLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred HHHHHHcCCCCeEeecCCcchhhhhhHHHHH-HHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 4456679999999999999999999999987 677777 567999999999999875 444444333433
No 400
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.17 E-value=5.9e-11 Score=134.26 Aligned_cols=143 Identities=18% Similarity=0.278 Sum_probs=84.5
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--hhcCccccccc----------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICGLMVPAES---------- 540 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--aq~G~~Vpa~~---------- 540 (803)
.+.+.+++..+ .+..++.|+.| |+-++|+|||||||||+|++|++-... .+++.|.-...
T Consensus 75 dvk~~sls~s~----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 75 DVKIESLSLSF----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred cceeeeeeecc----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35666766544 46788899888 899999999999999999999885522 11221110000
Q ss_pred ----------cccc----------------chHHHhhhCCcCCC--c------------------cCCccchHHHHHHHH
Q 003681 541 ----------ASIP----------------YFDAIMLHMKSYDS--P------------------ADGKSSFQVEMSEIR 574 (803)
Q Consensus 541 ----------a~i~----------------~~d~I~~~i~~~d~--l------------------~~~~Stfs~em~~l~ 574 (803)
..+. .++.++.+....++ . ......||.+.+ ++
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr-mR 229 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR-MR 229 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH-HH
Confidence 0000 00111111111110 0 001123334432 22
Q ss_pred HHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEccChhhh
Q 003681 575 SIVTA--TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIF 628 (803)
Q Consensus 575 ~iLa~--a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~-tvIivTH~~el~ 628 (803)
.++++ ..+|+|+||||||+|||+.....| -++|.+... ++++++|+.++.
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL----ee~L~k~d~~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWL----EEYLAKYDRIILVIVSHSQDFL 282 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHH----HHHHHhccCceEEEEecchhhh
Confidence 24444 799999999999999999764443 345555555 899999998875
No 401
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.3e-10 Score=124.14 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=112.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccccc--ccccc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAES--ASIPY 545 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa~~--a~i~~ 545 (803)
.+++++++..| ....+-++.||+ |+++-|+|.||||||||++.+.|+..... .|.+|.++. .+-..
T Consensus 322 ~lelrnvrfay---~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 322 TLELRNVRFAY---QDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred ceeeeeeeecc---CcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 46777776444 223355666666 89999999999999999999999875433 344444432 11122
Q ss_pred hHHHhhhCCcCCCccCC------------------------------ccchHHHHH-HHHHHHHhCCCCeEEEEeCCCCC
Q 003681 546 FDAIMLHMKSYDSPADG------------------------------KSSFQVEMS-EIRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 546 ~d~I~~~i~~~d~l~~~------------------------------~Stfs~em~-~l~~iLa~a~~psLLLLDEP~sG 594 (803)
|..+|+++-..+.+... .-..|.+.+ +++.+++.+.+++++++||=.+-
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 33344333211111000 012233443 45667778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~ 643 (803)
.||.-+..+...++-.+++.|+||+.+|||..-...+++.-.+.++.+.
T Consensus 479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 9999999999999999999999999999998777777776666666543
No 402
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.16 E-value=4.4e-11 Score=131.33 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=90.0
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh----hhhcCccccccc--c---------cccc--hHHHhhh
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----LGICGLMVPAES--A---------SIPY--FDAIMLH 552 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~----laq~G~~Vpa~~--a---------~i~~--~d~I~~~ 552 (803)
..+.+++++ |+.++|+|.+|||||||=+++..++. +...|-.+.... . .+++ +..+-.+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 457888988 89999999999999999999988762 122222221100 0 0000 0011112
Q ss_pred CCcCCC----------------------------------ccCCccchHHHHHHHHH-HHHhCCCCeEEEEeCCCCCCCH
Q 003681 553 MKSYDS----------------------------------PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 553 i~~~d~----------------------------------l~~~~Stfs~em~~l~~-iLa~a~~psLLLLDEP~sGLD~ 597 (803)
|++.+- .......||.+.++... +-+.+.+|++++||||||.||-
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 211111 12233467888776444 3344899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh
Q 003681 598 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~alle~L-~~~g~tvIivTH~~el~~ 629 (803)
.-...+. .+++.| .+.|.+.+|+|||+...+
T Consensus 460 SVQaQvv-~LLr~LQ~k~~LsYLFISHDL~Vvr 491 (534)
T COG4172 460 SVQAQVL-DLLRDLQQKHGLSYLFISHDLAVVR 491 (534)
T ss_pred HHHHHHH-HHHHHHHHHhCCeEEEEeccHHHHH
Confidence 8888887 788887 466899999999998764
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.1e-10 Score=128.64 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=87.3
Q ss_pred eccCccccccCCCceeeeccCCC----cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhh-hCCc
Q 003681 481 NGLSPYWFDAAEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIML-HMKS 555 (803)
Q Consensus 481 ~~l~~~~~~~~~~~~VlndVsLG----ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~-~i~~ 555 (803)
-|+|..-|.+.+.++.+..++|| +-++|+||||.||||||+.+.|-+.... |-.-....-.+++|++-.. .+..
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~-GE~RKnhrL~iG~FdQh~~E~L~~ 665 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND-GELRKNHRLRIGWFDQHANEALNG 665 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc-chhhccceeeeechhhhhHHhhcc
Confidence 45666666677888899988884 7899999999999999999977542110 0000001122333332111 1111
Q ss_pred CCCcc-----------------------------CCccchHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHHHHH
Q 003681 556 YDSPA-----------------------------DGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 556 ~d~l~-----------------------------~~~Stfs~em~~l~~iLa~-a~~psLLLLDEP~sGLD~~~g~~L~~ 605 (803)
.+... ..+..++.+.+....+... +..|+++||||||++||...-.+++.
T Consensus 666 Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaE 745 (807)
T KOG0066|consen 666 EETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAE 745 (807)
T ss_pred ccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHH
Confidence 11100 0112233443332222222 78999999999999999988776664
Q ss_pred HHHHHHHhcCCEEEEEccChhhhh
Q 003681 606 SIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 606 alle~L~~~g~tvIivTH~~el~~ 629 (803)
+| .+....||++|||-.+..
T Consensus 746 AI----ney~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 746 AI----NEYNGGVIMVSHDERLIV 765 (807)
T ss_pred HH----HhccCcEEEEecccceee
Confidence 44 445667999999987753
No 404
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=129.14 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=91.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC------ccccccc-----ccccc---------------hHHHhhhCCcC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICG------LMVPAES-----ASIPY---------------FDAIMLHMKSY 556 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G------~~Vpa~~-----a~i~~---------------~d~I~~~i~~~ 556 (803)
|++++++||||-|||||.|+++|.+.....+ +|-|+-. ..+.+ ...++..+...
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 7999999999999999999999987543221 1222211 11111 11233344444
Q ss_pred CCccCCccchHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 557 DSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 557 d~l~~~~Stfs~-em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+-+......+|. |+++++.+++...+.+|.|||||.+-||.+.+...+..|-+...+.+++.+++.||+-+.++
T Consensus 447 ~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 447 DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 444444555554 67777777788999999999999999999999999866666666778999999999888765
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=126.87 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=94.6
Q ss_pred cceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC---------cccccccc
Q 003681 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG---------LMVPAESA 541 (803)
Q Consensus 475 ~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G---------~~Vpa~~a 541 (803)
.+.+.++|+.-. .++++..+++.++ |+-+.|+||||+|||||+|+|+|+=..+... .|+|+..
T Consensus 390 ~~~i~~~nl~l~---~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P- 465 (604)
T COG4178 390 DHGITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP- 465 (604)
T ss_pred cceeEEeeeeEE---CCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC-
Confidence 466788877422 2456688888888 8999999999999999999999986433322 2334321
Q ss_pred cccch---HH-----------------HhhhCCcCC------CccCCccchHHHHHH-HHHHHHhCCCCeEEEEeCCCCC
Q 003681 542 SIPYF---DA-----------------IMLHMKSYD------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 542 ~i~~~---d~-----------------I~~~i~~~d------~l~~~~Stfs~em~~-l~~iLa~a~~psLLLLDEP~sG 594 (803)
++|.- +. ++...+..+ ........++.+-+| ++.+-...++|++++|||-|++
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 11110 11 111111110 000111223333333 4434444899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 595 LD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+|+.....+...+.+.+ .++|+|-+.|-..+..+..
T Consensus 546 LDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 546 LDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFHS 581 (604)
T ss_pred cChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHHh
Confidence 99988777764443333 4789999999888766543
No 406
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=3.4e-10 Score=138.93 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=105.6
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--------------------hhhc
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--------------------laq~ 532 (803)
.++++|+.-.|- ...+..|++|+++ |+.++|+||+||||||.+-+|-.+.- +.+.
T Consensus 987 ~I~~~~V~F~YP-sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCC-CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 377888765542 3457889999999 89999999999999999999877651 1111
Q ss_pred Ccccccccccc--cchHHHhhhCCcCC--------------------C--------ccCCccchHHHHHHHHH-HHHhCC
Q 003681 533 GLMVPAESASI--PYFDAIMLHMKSYD--------------------S--------PADGKSSFQVEMSEIRS-IVTATT 581 (803)
Q Consensus 533 G~~Vpa~~a~i--~~~d~I~~~i~~~d--------------------~--------l~~~~Stfs~em~~l~~-iLa~a~ 581 (803)
-..|.+++..+ .+.++|.. |..+ + +-..-..++.+.+|... +.+.+.
T Consensus 1066 i~lVsQEP~LF~~TIrENI~Y--G~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAY--GSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred cceeccCchhhcccHHHHHhc--cCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 11222322111 11112211 1000 0 00112345666665443 344489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEE
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~m~~~ 645 (803)
+|++|||||-||+||.+.- .+.+..++.... |.|+|+++|.+...+.++....+.++.+...
T Consensus 1144 nPkILLLDEATSALDseSE-rvVQeALd~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESE-RVVQEALDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred CCCeeeeeccchhhhhhhH-HHHHHHHHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 9999999999999999764 444566666544 7899999999999888877766666665433
No 407
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.09 E-value=2e-08 Score=108.45 Aligned_cols=288 Identities=18% Similarity=0.180 Sum_probs=171.0
Q ss_pred cchhhccCCCCCCchHHHHHhhccCCCchH--HH---HHHHHHHH------HhcccCCCCchHHHHHHHHHhhhhhhHHH
Q 003681 141 CLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IA---STIQAICK------LMSKVTCSIPEFTCLVKLLELREANHIEF 209 (803)
Q Consensus 141 ~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a---~~i~~~~~------~~~~~~~~~p~~~~~~~ll~~~~a~~~~~ 209 (803)
+|+.+ |-.-.++.=++.+|.||++|+.-. +- +.+++... -+...-..+|++..+.+.+..+..+-.+|
T Consensus 3 sL~~~-l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~~el 81 (308)
T smart00533 3 SLFEL-LNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASPRDL 81 (308)
T ss_pred CHHHH-HccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCHHHH
Confidence 34444 333234555999999999977421 11 12222222 11123355789988888888777888888
Q ss_pred HHHHHHHHHHHhhhcCchHHHHHHhhcchh--hhhhccCCChHHHHHHHHHHHHHhhchhcccCCccccc-cCCCCCChh
Q 003681 210 CRIKNVLDEILHMYGNSELNEILELLMDPT--WVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKI-CSYDNIPSE 286 (803)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~c~~~~~~i~~~v~~~~~~~~~~-~~~~~ip~~ 286 (803)
.++.+.+..+..+. .+++..-.+. .+...+. +.+.+. +..+.+++. +.+... .+.+.|.+.
T Consensus 82 ~~l~~~l~~~~~l~------~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~l~~~~~---~~~~~~~~~~~~i~~~ 145 (308)
T smart00533 82 LRLYDSLEGLKEIR------QLLESLDGPLLGLLLKVIL---EPLLEL----LELLLELLN---DDDPLEVNDGGLIKDG 145 (308)
T ss_pred HHHHHHHHHHHHHH------HHHHhcCcHHHHHHHHhhc---cchHHH----HHHHHHHhc---cCCcccccCCCeeCCC
Confidence 88888777554332 2222211000 0000000 001111 122222222 222211 111233333
Q ss_pred HHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhcCCCCCCCcceeeeccccceeeeccceecc
Q 003681 287 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPT 366 (803)
Q Consensus 287 f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~r~~~~ 366 (803)
++++++.+.+....+...+.+.+..+..+ ++. +.+.+. ....++ |+++
T Consensus 146 -----------------~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~-------~~~--~~l~~~----~~~~~g--~~i~ 193 (308)
T smart00533 146 -----------------FDPELDELREKLEELEEELEELLKKEREE-------LGI--DSLKLG----YNKVHG--YYIE 193 (308)
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCC--CceEEe----EeccEE--EEEE
Confidence 44455666666665555555443322221 110 111111 011122 6666
Q ss_pred cccCCCCccccCccccccccCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003681 367 VWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 446 (803)
Q Consensus 367 v~~~~~~~~~i~~lv~~~~~~G~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~ 446 (803)
+..+.. ..+++.++..+++|.+++ |++.++.++++++.+...++.+...++++++...+..+...+..+...+..
T Consensus 194 v~~~~~--~~~~~~~~~~s~s~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~ 268 (308)
T smart00533 194 VTKSEA--KKVPKDFIRRSSLKNTER---FTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAE 268 (308)
T ss_pred ecchhh--ccCChHHHHHhhhcccce---eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665433 367888888888888764 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccCccc
Q 003681 447 GKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYW 487 (803)
Q Consensus 447 a~al~a~a~~a~~~~~~~P~~~~~~~~g~~~i~l~~l~~~~ 487 (803)
.|+++|.|..+...+||+|+|++. ..+.+.+.+|+.
T Consensus 269 lD~l~s~a~~a~~~~~~~P~i~~~-----~~l~i~~~rHPl 304 (308)
T smart00533 269 LDVLLSLATLAAEGNYVRPEFVDS-----GELEIKNGRHPV 304 (308)
T ss_pred HHHHHHHHHHHHHCCCcCCeeCCC-----CCEEEeeCCCCc
Confidence 999999999999999999999863 246776654443
No 408
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1e-09 Score=134.70 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=56.2
Q ss_pred cCCccchHHHHHHHHHHHHh-CC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 560 ADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 560 ~~~~Stfs~em~~l~~iLa~-a~---~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
.....++|.++++...+... +. +|+++|||||++|||+.+...+. .+++.+.+.|.|+|++||++++...++
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi~H~~~~i~~aD 898 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVIEHNLDVIKTAD 898 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 34456777777775554433 33 68999999999999999999986 667777777999999999999876544
No 409
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=1.9e-09 Score=134.91 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=110.6
Q ss_pred CcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHH
Q 003681 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 549 (803)
Q Consensus 474 g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I 549 (803)
+...+.+++....|-. .+..+.++|+|| |+.++|+||-|||||+||.+|.|-.........|....++++|...|
T Consensus 515 ~~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3445788888777754 344558999998 89999999999999999999999764332222222223333333222
Q ss_pred hhhCCcCCCccC-----------------------------------CccchHHHHHHH-HHHHHhCCCCeEEEEeCCCC
Q 003681 550 MLHMKSYDSPAD-----------------------------------GKSSFQVEMSEI-RSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 550 ~~~i~~~d~l~~-----------------------------------~~Stfs~em~~l-~~iLa~a~~psLLLLDEP~s 593 (803)
+. -+++||+.. .--+.+++.++. +-+.|.-.+.+++|||.|+|
T Consensus 594 ~n-gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 594 QN-GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hC-CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 21 112222211 123556676653 33444479999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003681 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 594 GLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~ 640 (803)
++|.+-+..|.+..+..+.+ ++|+|++||..++...++..--+.++
T Consensus 673 AVDahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCC
Confidence 99999999999998855544 78999999998887766554444443
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.04 E-value=7.1e-10 Score=123.45 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhc----------------Cc---------------------c---cccc-c-
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGIC----------------GL---------------------M---VPAE-S- 540 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~----------------G~---------------------~---Vpa~-~- 540 (803)
|.+++|+||||-||||.+|+++|-+..... |. | +|.. .
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG 179 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG 179 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc
Confidence 889999999999999999999997622110 00 0 0000 0
Q ss_pred ---------ccccchHHHhhhCCcCCCccCCccchHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003681 541 ---------ASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 610 (803)
Q Consensus 541 ---------a~i~~~d~I~~~i~~~d~l~~~~Stfs~-em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~ 610 (803)
..-+.++.+..+++....+....+.+|. |+++++.+.+.+.+.++.++|||++-||..++...+ .+++.
T Consensus 180 ~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a-r~Ire 258 (591)
T COG1245 180 KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA-RVIRE 258 (591)
T ss_pred hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH-HHHHH
Confidence 0012234444555555555555566665 566666666678999999999999999999999997 77777
Q ss_pred HHhcCCEEEEEccChhhhhCcccc
Q 003681 611 LDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 611 L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
+.+.+++||++.||+...++....
T Consensus 259 l~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 259 LAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred HhccCCeEEEEechHHHHHHhhhe
Confidence 877789999999999887765443
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.04 E-value=1.2e-09 Score=134.31 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=57.1
Q ss_pred cCCccchHHHHHHHHHHHHh-CCCC---eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 560 ADGKSSFQVEMSEIRSIVTA-TTSR---SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 560 ~~~~Stfs~em~~l~~iLa~-a~~p---sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
.....++|.++++...+... +.+| +++|||||++|||+.+...+. .+++.+.+.|.|+|++||++++...++
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiitH~~~~i~~aD 900 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIEHNLDVIKTAD 900 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 34456778888776554443 6666 999999999999999999987 677777778999999999999876544
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.03 E-value=5.7e-10 Score=142.84 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred cCCccchHHHHHHHHHHHHh-C---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 560 ADGKSSFQVEMSEIRSIVTA-T---TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 560 ~~~~Stfs~em~~l~~iLa~-a---~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
.....++|.++++...+... + .+|+++||||||+|||+.+...+. .+++.+.+.|.|+|++||++++...+++.
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIiIsHdl~~i~~aDrV 881 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVIIEHNMHVVKVADYV 881 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 33445667777765554433 2 699999999999999999999987 77777878899999999999987665543
No 413
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=120.59 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc-----------------cccccc-c---cccchH
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-----------------MVPAES-A---SIPYFD 547 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~-----------------~Vpa~~-a---~i~~~d 547 (803)
...++.|+|| |++++|+|++|+||||+||+|+|....--.-. .+|.+. . .....+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 3578899998 89999999999999999999999873211111 122211 0 111223
Q ss_pred HHhhhC-------------CcCCCccC--CccchHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003681 548 AIMLHM-------------KSYDSPAD--GKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 548 ~I~~~i-------------~~~d~l~~--~~Stfs~em~~l~~iLa~-a~~psLLLLDEP~sGLD~~~g~~L~~alle~L 611 (803)
+++... |..|.... ..+.++.+.++...+.+. +..|.+++.||..+.||+..+..++..+-+..
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 333322 22222211 123445566665555544 68899999999999999999999998888877
Q ss_pred HhcCCEEEEEccChhhhh
Q 003681 612 DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 612 ~~~g~tvIivTH~~el~~ 629 (803)
.+.|.|.+++||..++.+
T Consensus 555 Re~giTlivvThrpEv~~ 572 (593)
T COG2401 555 REAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHhCCeEEEEecCHHHHh
Confidence 888999999999999875
No 414
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=3.3e-10 Score=139.04 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=86.6
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh-------hhhcCcccccc-----cccccchHHHhhhCCcC
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------LGICGLMVPAE-----SASIPYFDAIMLHMKSY 556 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~-------laq~G~~Vpa~-----~a~i~~~d~I~~~i~~~ 556 (803)
.+.+++||+- |.+++|+|+||+||||||+.++|=.. +...|.+.+++ .+++.+.|--...++++
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 4567778775 78999999999999999999998542 22334444421 12333333222333444
Q ss_pred CCccCC----------cc---ch------HHHHHHHHHHH--------------------HhCCCC-eEEEEeCCCCCCC
Q 003681 557 DSPADG----------KS---SF------QVEMSEIRSIV--------------------TATTSR-SLVLIDEICRGTE 596 (803)
Q Consensus 557 d~l~~~----------~S---tf------s~em~~l~~iL--------------------a~a~~p-sLLLLDEP~sGLD 596 (803)
+++... .+ .| ..||++.++++ ..+.+| +||+|||||+|||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 433211 00 01 12333333322 125678 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 597 ~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
...+..++ .+++.+.+.|.+|+.+=|.+.
T Consensus 963 sqaA~~i~-~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 963 SQAAAIVM-RFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred HHHHHHHH-HHHHHHHhcCCeEEEEecCCc
Confidence 99888776 888999999999999999974
No 415
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.93 E-value=3.5e-09 Score=107.82 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=94.5
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCc------------
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGL------------ 534 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~------------ 534 (803)
..|+++|+...| ....+++-|+|+ |.-..++|.||+|||||||+++|-.+..- .|.
T Consensus 12 ~aievsgl~f~y---~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 12 FAIEVSGLQFKY---KVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ceEEEeccEEec---ccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 357788876544 344578888887 78899999999999999999998542110 000
Q ss_pred ---cccc-------ccccccch-----HHHhhhCCcCCC-----c----cC----CccchHHHHHHHHHHHH-hCCCCeE
Q 003681 535 ---MVPA-------ESASIPYF-----DAIMLHMKSYDS-----P----AD----GKSSFQVEMSEIRSIVT-ATTSRSL 585 (803)
Q Consensus 535 ---~Vpa-------~~a~i~~~-----d~I~~~i~~~d~-----l----~~----~~Stfs~em~~l~~iLa-~a~~psL 585 (803)
|+-. -...+|.. ..+...++..+- + .. .....+.+.++..++.. .+.+-++
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkV 168 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKV 168 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeE
Confidence 0000 00111110 011111211111 0 00 01233445555444444 4666799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChh-hhhCcc
Q 003681 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPL 632 (803)
Q Consensus 586 LLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~e-l~~l~~ 632 (803)
+||||.|--||...+..+..-+.++..++|+||+.+||-.+ +...+.
T Consensus 169 LLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpt 216 (291)
T KOG2355|consen 169 LLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPT 216 (291)
T ss_pred EEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcch
Confidence 99999999999999999987777777788999999999653 444443
No 416
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=2.7e-09 Score=114.75 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHH-Hh--C--CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 566 FQVEMSEIRSIV-TA--T--TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 566 fs~em~~l~~iL-a~--a--~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
++.++++...+. +. + .+|+++|+|||++|+|+.....+. .++..+.+ +.++|++||++++...+++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEechHHHHHhcCc
Confidence 456665543322 22 2 399999999999999999988887 45555544 6899999999987665543
No 417
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=7.4e-09 Score=104.27 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
+..+.++.-+.|||||-++|+|.-...++ +++..+.+.|.-+||+||..=+..+.
T Consensus 140 ~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiATHSPiLlAiP 194 (233)
T COG3910 140 FHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIATHSPILLAIP 194 (233)
T ss_pred HHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEEecChhheeCC
Confidence 44458899999999999999999999987 89999999999999999998776543
No 418
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.83 E-value=1.6e-08 Score=101.38 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+.+.+-+|+++|.||...+||...+..+....++.-.+.|...|.+|.++...+.
T Consensus 161 ARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKH 215 (267)
T COG4167 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH 215 (267)
T ss_pred HHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhh
Confidence 3444899999999999999999999999866666667789999999999887654
No 419
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.81 E-value=1.8e-08 Score=102.90 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~~el~ 628 (803)
+++.+..|.|+|.||||+.+++.....+. .++..+ .++|.++++++||+...
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~i 222 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMI 222 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHH
Confidence 55668999999999999999999999998 555555 56789999999998654
No 420
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.74 E-value=2.3e-07 Score=106.40 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=97.2
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--------h----hcCcccccc
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G----ICGLMVPAE 539 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--------a----q~G~~Vpa~ 539 (803)
..++++++.-. ..+++..+..|+++ |..+.||||||+|||+|||+++|+-.. . ..-.|+|+.
T Consensus 432 n~i~~e~v~l~--tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 432 NAIEFEEVSLS--TPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ceEEeeeeeec--CCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 45777765311 11236778888998 899999999999999999999998521 1 112456665
Q ss_pred ccc-ccc-hH-------------------------------HHhhhCCcCC--CccCCccchHH-HHHHHHHHHHhCCCC
Q 003681 540 SAS-IPY-FD-------------------------------AIMLHMKSYD--SPADGKSSFQV-EMSEIRSIVTATTSR 583 (803)
Q Consensus 540 ~a~-i~~-~d-------------------------------~I~~~i~~~d--~l~~~~Stfs~-em~~l~~iLa~a~~p 583 (803)
.-. ++- -+ ++..+.+..| ........+|. |+++++.+.-...+|
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence 311 110 01 1222333322 22222334443 455555444448999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
++.||||-|+++|...-.++. +.+.+.|.|.|-++|-..+.++.+
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Y----r~~r~~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALY----RKCREMGITFISVGHRKSLWKFHD 634 (659)
T ss_pred ceEEeechhhhccHHHHHHHH----HHHHHcCCeEEEeccHHHHHhhhh
Confidence 999999999999987654443 556777999999999988876543
No 421
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.5e-08 Score=108.68 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=94.6
Q ss_pred EEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh--h------------------hcC
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--G------------------ICG 533 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l--a------------------q~G 533 (803)
+.+.+++-. ..+.+++++++++ |+.++|+||+|+||||++|.+-.+.-. + ...
T Consensus 263 v~F~~V~F~---y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 263 VAFINVSFA---YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred EEEEEEEee---ccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 555555433 3567899999998 899999999999999999999887611 1 111
Q ss_pred cccccccccccchHHHhhhCCc--CCC-----------------c------------cCCccchHHHHHH-HHHHHHhCC
Q 003681 534 LMVPAESASIPYFDAIMLHMKS--YDS-----------------P------------ADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 534 ~~Vpa~~a~i~~~d~I~~~i~~--~d~-----------------l------------~~~~Stfs~em~~-l~~iLa~a~ 581 (803)
..||++...+. |.++..+.- .+. + +.++ ..+.+-+| ++-+...+.
T Consensus 340 g~VPQDtvLFN--Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggekqrvaiar~ilk 416 (497)
T COG5265 340 GIVPQDTVLFN--DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEKQRVAIARTILK 416 (497)
T ss_pred CcCcccceehh--hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchHHHHHHHHHHhc
Confidence 22343322111 122221110 000 0 0000 12233333 333333489
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~~~ 641 (803)
+|+++++||-||.||+..-.+|. +-++.+. .|.|.+++-|-+.-.--++....+.++.
T Consensus 417 ~p~il~~deatsaldt~te~~iq-~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQ-AALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999888875 5555554 5789999999877655555443334443
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.70 E-value=1.1e-07 Score=98.31 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
...+..++||||+.++||......++ .++..+.+ +.-+|++||..++...++.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEEEEE-S-HHHHTT-SE
T ss_pred cccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccc
Confidence 36788999999999999999988886 56665543 4779999999998877643
No 423
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.8e-07 Score=107.37 Aligned_cols=158 Identities=17% Similarity=0.219 Sum_probs=100.4
Q ss_pred ceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh---------------------hh
Q 003681 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LG 530 (803)
Q Consensus 476 ~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~---------------------la 530 (803)
..+.++++... ..++|+|| ||+++|.|-=|+|+|-++++|.|+.. +.
T Consensus 262 ~~l~v~~l~~~--------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 262 PVLEVRNLSGG--------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred cEEEEecCCCC--------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 34566666421 14677777 99999999999999999999999541 11
Q ss_pred hcCccccccccc---c---cchHHH--------------------------hhhCCcC-CCccCCccchHHHHHHHHHHH
Q 003681 531 ICGLMVPAESAS---I---PYFDAI--------------------------MLHMKSY-DSPADGKSSFQVEMSEIRSIV 577 (803)
Q Consensus 531 q~G~~Vpa~~a~---i---~~~d~I--------------------------~~~i~~~-d~l~~~~Stfs~em~~l~~iL 577 (803)
..-.|||.++.. + +..+++ ...+... -+.....+++|.+-+|.. ++
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV-vl 412 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV-VL 412 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH-HH
Confidence 122345543311 1 111111 0111110 112223445666655544 34
Q ss_pred Hh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh-hhhhCcccccccccceeE
Q 003681 578 TA--TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH-GIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 578 a~--a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~-el~~l~~~~~~v~~~~m~ 643 (803)
++ +++|+++||||||+|.|......|. .+++.+.+.|.+||++|-++ |+..++++.-.+..+.+.
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eIy-~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEIY-RLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHHH-HHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 44 8999999999999999999999996 89999999999998888776 455566655444444443
No 424
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.66 E-value=2.8e-07 Score=104.54 Aligned_cols=136 Identities=20% Similarity=0.221 Sum_probs=82.7
Q ss_pred CCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh---------cCcccccccc-ccc-chHHHhh----
Q 003681 491 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA-SIP-YFDAIML---- 551 (803)
Q Consensus 491 ~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq---------~G~~Vpa~~a-~i~-~~d~I~~---- 551 (803)
+.+..+.+.++| |.-+.||||||||||+|+|+++|+-..-+ .-.|+|+..- ..+ ..|+|..
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcH
Confidence 345677777777 78899999999999999999999863322 2234444320 010 0111111
Q ss_pred ---------------------------hCCcCCCccCCccchHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHH
Q 003681 552 ---------------------------HMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSRSLVLIDEICRGTETAKGTCI 603 (803)
Q Consensus 552 ---------------------------~i~~~d~l~~~~Stfs~em~~l~~iLa-~a~~psLLLLDEP~sGLD~~~g~~L 603 (803)
+-+..|-+......++.+-+|...+.+ .-.+|...+|||-|++..+.--.
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~-- 649 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG-- 649 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH--
Confidence 101111111111122333333332222 26899999999999999886433
Q ss_pred HHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 604 AGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 604 ~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.+.+..++.|.+.|-+||...+-.+
T Consensus 650 --~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 650 --KIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred --HHHHHHHhcCceEEEeecCccHHHH
Confidence 4446667889999999999887654
No 425
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.64 E-value=9e-08 Score=102.95 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhh-----cCccccc--cc-------ccccchHHHhhhCCcCCCccCCccchHHH
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA--ES-------ASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq-----~G~~Vpa--~~-------a~i~~~d~I~~~i~~~d~l~~~~Stfs~e 569 (803)
..++|.||||+|||||+|+++++..... .|..+.. +. ..+++. .++.++.+.++..+ ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k-----~~~ 185 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPK-----AEG 185 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchH-----HHH
Confidence 4689999999999999999999874321 1211110 00 111111 11222222211110 112
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 570 m~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
| ..+.++.+|+++|+|||++. ....++++.+. .|.++|++||+..+.+.
T Consensus 186 ~----~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 186 M----MMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred H----HHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 2 22334579999999999742 22335666654 69999999998776544
No 426
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=1.8e-07 Score=117.78 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=102.3
Q ss_pred eEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhh------------hhcC-------
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------GICG------- 533 (803)
Q Consensus 477 ~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~l------------aq~G------- 533 (803)
.|+++|++-.|- ++...|++++++ |+-+||+|..|||||||+.++-.+... +++|
T Consensus 1138 ~I~f~~~~~RYr--p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYR--PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred eEEEEEeEEEeC--CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 588888865552 335689999999 899999999999999999999888732 2233
Q ss_pred -cccccccccc--------cch-----HHHhh------------h--CCcCCCccCCccchHHHHHHHHHH-HHhCCCCe
Q 003681 534 -LMVPAESASI--------PYF-----DAIML------------H--MKSYDSPADGKSSFQVEMSEIRSI-VTATTSRS 584 (803)
Q Consensus 534 -~~Vpa~~a~i--------~~~-----d~I~~------------~--i~~~d~l~~~~Stfs~em~~l~~i-La~a~~ps 584 (803)
..+|++...+ ..+ ++|+. . .+....+..+-+.||.|.+|+.-+ .+.+.+.+
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 2356654221 111 11211 1 112222344557899998887643 33489999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 585 LLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
+++|||.|++.|+..=.-|-..|-+.++ +||||.+-|.+.-.-..++
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCe
Confidence 9999999999999765555434444443 6999999998776544443
No 427
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.9e-07 Score=110.42 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=49.6
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003681 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 579 ~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~ 634 (803)
+.+...|.||||||.||-..+-..++ .++..|.+.|.|||++.|+++..+.++..
T Consensus 840 ~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 840 RSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 37888999999999999999999997 89999999999999999999988776543
No 428
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.8e-08 Score=106.15 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=38.3
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 576 iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
+.+....|.|+.|||||+.||......+ -.+|.....|.+|+|||..+.+
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNAVIWL----dNYLQgWkKTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQGFLD 473 (807)
T ss_pred HHHHhcCceeeeecCCccccccceeeeh----hhHHhhhhheeEEEecccchHH
Confidence 3344689999999999999998654433 3556666789999999987754
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.53 E-value=3.8e-07 Score=95.83 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=67.6
Q ss_pred cCCCcEEEEEcCCCCCchHH-HHHHHHhHhhhhcCcccccccccccchHHHhhhCCc-------CCCccC-Cc-cchHH-
Q 003681 500 VDMQSLFLLTGPNGGGKSSL-LRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS-------YDSPAD-GK-SSFQV- 568 (803)
Q Consensus 500 VsLGei~~ItGPNGsGKSTL-Lr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~-------~d~l~~-~~-Stfs~- 568 (803)
+.-|++++|+||||+||||| ++.+.++........|+..+...-....+ ...++. .+.+.. .. ..++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34478999999999999999 67777765434344455433211111111 111111 011100 00 00111
Q ss_pred -HHHH-HHHHHHh--CCCCeEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 569 -EMSE-IRSIVTA--TTSRSLVLIDEICRGT----ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 569 -em~~-l~~iLa~--a~~psLLLLDEP~sGL----D~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
+... +..++.. ..+|+++++|||++++ |+.....+. .+++.+.+.|.++++ ||+..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~-t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIIL-TANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEE-Eeccc
Confidence 1111 2223322 3589999999999998 666556664 677777777886655 55543
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.52 E-value=2.4e-07 Score=93.40 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHh---CCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003681 567 QVEMSEIRSIVTA---TTSR-SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 567 s~em~~l~~iLa~---a~~p-sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~ 628 (803)
+.|++++..++.. .... .++++|||-++|.|.....++ .++..+.+.+.-+|+|||...+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 6677776444333 3444 999999999999998888887 55555555678999999998764
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.50 E-value=2e-07 Score=120.07 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=55.1
Q ss_pred cchHHHHHHHHHHHHhC----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003681 564 SSFQVEMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 564 Stfs~em~~l~~iLa~a----~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~ 635 (803)
.++|.+-.|...+.+.+ ..+.|+||||||.||++.+-..+. .+++.|.+.|.|+|++.|++++.+.++...
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivieH~~~~i~~aD~ii 1772 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYIDHDPALLKQADYLI 1772 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhCCEEE
Confidence 45555444433333332 346999999999999999999997 788999999999999999999988776543
No 432
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.45 E-value=1.2e-06 Score=84.11 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHhHhhh-hcCcccccccccccchHH--HhhhCCcCCCccC--Ccc-c-hHHHHHHHHHHH
Q 003681 505 LFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDA--IMLHMKSYDSPAD--GKS-S-FQVEMSEIRSIV 577 (803)
Q Consensus 505 i~~ItGPNGsGKSTLLr~Iagl~~la-q~G~~Vpa~~a~i~~~d~--I~~~i~~~d~l~~--~~S-t-fs~em~~l~~iL 577 (803)
+++|+||||+||||+++.+++..... ..-.++..+......... .+......+.... ... . ......+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 46899999999999999998865321 111223332221111111 1111111111110 001 1 111222233344
Q ss_pred HhCCCCeEEEEeCCCCCC----------CHHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 578 TATTSRSLVLIDEICRGT----------ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 578 a~a~~psLLLLDEP~sGL----------D~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
....++.++++||+++-+ +...... ...+.+.+.+.++++|+++|....
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEE-LRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHhcCCceEEEEEecCCc
Confidence 557899999999999544 3333333 457777777789999999998753
No 433
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=5.1e-07 Score=102.47 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=86.7
Q ss_pred EEEeccCccccccCCCc-eeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc--cccc-ccccccc----
Q 003681 478 LKMNGLSPYWFDAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPA-ESASIPY---- 545 (803)
Q Consensus 478 i~l~~l~~~~~~~~~~~-~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~--~Vpa-~~a~i~~---- 545 (803)
+.+..+.. ....+. .++.++++ .+-+.++|+||.||||++|++.+=... ..|. ..|. ...++.+
T Consensus 363 l~i~~V~f---~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 363 LRISYVAF---EYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-TRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred eEEEeeec---cCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-ccceeeecccceecchhHhhhh
Confidence 44544442 223344 45555555 467899999999999999999873210 0000 0000 0000000
Q ss_pred -----------------------hHHHhhhCCcCCCcc-CCccchHHHHHHHH-HHHHhCCCCeEEEEeCCCCCCCHHHH
Q 003681 546 -----------------------FDAIMLHMKSYDSPA-DGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 546 -----------------------~d~I~~~i~~~d~l~-~~~Stfs~em~~l~-~iLa~a~~psLLLLDEP~sGLD~~~g 600 (803)
...-+..+|....+. ....++|.+.+-.. .+.....+|-|++|||||+.||...-
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl 518 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSL 518 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHH
Confidence 112233445443332 33456677755433 33334899999999999999999775
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 601 ~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
.++ .+.+.+.+..||++||+.++...
T Consensus 519 ~AL----~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 519 GAL----AKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred HHH----HHHHHhcCCcEEEEECcHHHHhh
Confidence 444 46666667789999999999764
No 434
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.36 E-value=1.7e-06 Score=86.53 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCCCeEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 580 TTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD---~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
..+|+++++|||++.+| ......+ ..+++.+++.|.++|+++|....
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEEEeccccC
Confidence 46899999999999998 5544444 46778888889999999998765
No 435
>PRK13695 putative NTPase; Provisional
Probab=98.34 E-value=1.9e-06 Score=86.23 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
+.+|+++|+|||+. ++..+ ..+. ..++.+.+.+.++|+++|+.....+.+
T Consensus 94 l~~~~~lllDE~~~-~e~~~-~~~~-~~l~~~~~~~~~~i~v~h~~~~~~~~~ 143 (174)
T PRK13695 94 LEEADVIIIDEIGK-MELKS-PKFV-KAVEEVLDSEKPVIATLHRRSVHPFVQ 143 (174)
T ss_pred cCCCCEEEEECCCc-chhhh-HHHH-HHHHHHHhCCCeEEEEECchhhHHHHH
Confidence 57999999999742 33333 2233 444445577899999999865544333
No 436
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=9.3e-07 Score=94.91 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
..+|+++|+|||++++|+.....+. +.+.+.+ .++++||+.+.
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~-q~ii~~~~~~~ 250 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEGRV-QTFVTTTDLAD 250 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCC-CEEEEeCCchh
Confidence 4799999999999999998877665 3333333 35555555443
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.27 E-value=9.1e-06 Score=74.68 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh-cCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh--
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-- 579 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq-~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-- 579 (803)
+..++|+||+|+||||+++.++....... ...++..+........... .......... .........++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKAS-GSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCC-CCHHHHHHHHHHHHH
Confidence 35789999999999999999987653332 1122222211111110000 0000000001 1111122222222
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhcCCEEEEEccC
Q 003681 580 TTSRSLVLIDEICRGTETAKGTCIAG-----SIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD~~~g~~L~~-----alle~L~~~g~tvIivTH~ 624 (803)
...++++++||+.+-.+......... .........+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 33479999999999999876655432 1233334556788888885
No 438
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=98.23 E-value=1.5e-08 Score=120.87 Aligned_cols=295 Identities=24% Similarity=0.183 Sum_probs=190.1
Q ss_pred CCCceeeeccCCCcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHH
Q 003681 491 AEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 570 (803)
Q Consensus 491 ~~~~~VlndVsLGei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em 570 (803)
.-...+.+|+......+-+++|++|+|. ++-+.-.......+.+.|.....++.++.+-.++...+. ...+.|...+
T Consensus 742 ~c~si~~~~vGk~~y~lEvP~n~~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~--d~~~r~~~~f 818 (1125)
T KOG0217|consen 742 GCSSIVFVDVGKDVYQLEVPENGGVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLS--DLKRRLIVRF 818 (1125)
T ss_pred CCCceeEeecCceEEEEecCcccCCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 3345666777767889999999999999 666544445555677888877777777765554433221 1122222222
Q ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH----HHHHHHHHHHHHhcCCEEEEEccChhhhhCccc----cccccccee
Q 003681 571 SEIRSIVTATTSRSLVLIDEICRGTETAKG----TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK----IKNAAYKAM 642 (803)
Q Consensus 571 ~~l~~iLa~a~~psLLLLDEP~sGLD~~~g----~~L~~alle~L~~~g~tvIivTH~~el~~l~~~----~~~v~~~~m 642 (803)
.+.. ++=+++-..+..+|+.++++-...+ .... .+.+.... ....++.+|-|.-..+... .+|.....+
T Consensus 819 ~~~~-~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp-~i~~~~dt-~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~ 895 (1125)
T KOG0217|consen 819 DEHY-IIWQATVKALASIDCLLSLAETSKGLGGPMCRP-EIVESTDT-PGFLIVKGLRHPCFSLPSTGTSFIPNDVELGG 895 (1125)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc-eeecccCC-CceeEEecccCceeecCcCCCccccchhhccc
Confidence 2211 1111222334456666665554433 1111 12222222 2256777777766554433 333333222
Q ss_pred EEEEeCC-ceeeeeEEeeCcCCCcHHHHHHHHcC--CCHHHHHHHH--HHHHHh--------------------------
Q 003681 643 GTEYLDG-QTVPTWKLVDGICRESLAFETAKREG--VPETIIQRAE--DLYIAC-------------------------- 691 (803)
Q Consensus 643 ~~~~~~~-~l~~tYkL~~G~~~~S~al~iA~~~G--lp~~Ii~rA~--~l~~~~-------------------------- 691 (803)
......+ -.-|+.....+.+.++-.+.|++..| +|.++++++- .+...+
T Consensus 896 ~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~ 975 (1125)
T KOG0217|consen 896 AEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKH 975 (1125)
T ss_pred cccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhh
Confidence 2111111 12355666666777788888999999 9999887754 333332
Q ss_pred ----------c-----------------ccchhcccccCCCCcc-cccceeEEEecC-CccccccccCChhh-HHHhhhc
Q 003681 692 ----------G-----------------VNCVMIAAREQPPPSI-IGASCVYVMLRP-DKKLYIGQTDDLDG-RIRAHRG 741 (803)
Q Consensus 692 ----------~-----------------~~~~~~~~~~~~~p~~-~~~~~vy~~~~~-~~~~y~~~~d~l~~-r~~~~r~ 741 (803)
+ ..+...+.++.+++++ .+..|+|+++.| .+.+|.+..+|.+. +...||.
T Consensus 976 aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl 1055 (1125)
T KOG0217|consen 976 ATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKL 1055 (1125)
T ss_pred cCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehh
Confidence 0 0111223556678898 888899999988 78899999999988 7788898
Q ss_pred ccCcccceeEEEeeCCchHHHHHHHHHHhhhhcccccccccccCCccccc
Q 003681 742 KEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFG 791 (803)
Q Consensus 742 ~~~~~~~~~~~~~~~~k~~~~~le~~~~~~L~~~~~~l~~~~d~~~~~~~ 791 (803)
.+|.+--++.|-.+.++++.+|+.+..++++...+..+.|.+|++||+|+
T Consensus 1056 ~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~~~~d~~~r~~~ 1105 (1125)
T KOG0217|consen 1056 EEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSANAADGKIREVV 1105 (1125)
T ss_pred ccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 99999888888888899999999999999999999999999999999999
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.15 E-value=9.4e-06 Score=84.98 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=67.0
Q ss_pred CCCcEEEEEcCCCCCchHHHHHHHHh-HhhhhcCcccccccccccchHHHhhhCCc--CCCccC-----------Cccch
Q 003681 501 DMQSLFLLTGPNGGGKSSLLRSICAA-SLLGICGLMVPAESASIPYFDAIMLHMKS--YDSPAD-----------GKSSF 566 (803)
Q Consensus 501 sLGei~~ItGPNGsGKSTLLr~Iagl-~~laq~G~~Vpa~~a~i~~~d~I~~~i~~--~d~l~~-----------~~Stf 566 (803)
--|+++.|+|++|+|||||..+++-- +.-...+.|+..+...-....+ +..++. .+.+.. .....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccC
Confidence 33789999999999999999998532 2223334455443321111111 111111 110000 01111
Q ss_pred HHHHHHHHHHHHh---CCCCeEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 567 QVEMSEIRSIVTA---TTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 567 s~em~~l~~iLa~---a~~psLLLLDEP~sGLD---~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
..++.++...+.. ..+++++++|||+..+| ...-..+.. .+..+.+.|+++++++|....
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcC
Confidence 2333444333322 25899999999996544 433333332 345556678999999997643
No 440
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=1.1e-05 Score=99.87 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=64.0
Q ss_pred hhCCcCCC-ccCCccchHHHHHHHHHHHHh-CCC--CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 551 LHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 551 ~~i~~~d~-l~~~~Stfs~em~~l~~iLa~-a~~--psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
..++.... +.....++|.++++...+... +.+ |.++||||||+|||+.+...+. .+++.+.+.|.|||++||+++
T Consensus 472 ~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~~ 550 (924)
T TIGR00630 472 IDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDEE 550 (924)
T ss_pred hhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHH
Confidence 34444322 456678899998887665544 444 4899999999999999999986 788888888999999999999
Q ss_pred hhhCcccc
Q 003681 627 IFSLPLKI 634 (803)
Q Consensus 627 l~~l~~~~ 634 (803)
+...+++.
T Consensus 551 ~i~~aD~v 558 (924)
T TIGR00630 551 TIRAADYV 558 (924)
T ss_pred HHhhCCEE
Confidence 87765543
No 441
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.06 E-value=1.1e-05 Score=99.80 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred hhhCCcCCC-ccCCccchHHHHHHHHHHHHh-CCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 550 MLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 550 ~~~i~~~d~-l~~~~Stfs~em~~l~~iLa~-a~~p--sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
+..++.... +.....++|.+++|...+... +.+| .++||||||+|||+.+...+. .+++.+++.|.|||++||++
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCH
Confidence 444555432 456677889888887665554 4554 999999999999999999987 78888888899999999999
Q ss_pred hhhhCcccc
Q 003681 626 GIFSLPLKI 634 (803)
Q Consensus 626 el~~l~~~~ 634 (803)
+....+++.
T Consensus 552 ~~i~~aD~v 560 (943)
T PRK00349 552 DTIRAADYI 560 (943)
T ss_pred HHHHhCCEE
Confidence 987655543
No 442
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.00 E-value=7.8e-06 Score=91.23 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=82.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcC-------ccccccc-----ccccch---------------HHHhhhCCc
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICG-------LMVPAES-----ASIPYF---------------DAIMLHMKS 555 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G-------~~Vpa~~-----a~i~~~---------------d~I~~~i~~ 555 (803)
.++++.+|.||.|||||+++++|.......+ ++-|+.. ..+.+. ..+...+..
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 4789999999999999999999954322211 1112211 111110 011112222
Q ss_pred CCCccCCccchH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 556 YDSPADGKSSFQ-VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 556 ~d~l~~~~Stfs-~em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
++-+.+...+.+ .|+++.+.++..-...++.++|||.+-+|.+.+...+..+.+.+...+.|-+++.||.-.+.+
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 222222233333 456667777777788899999999999999888777766666667778899999998776644
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.98 E-value=2.6e-05 Score=80.05 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccc-ccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh--C
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA--T 580 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~--a 580 (803)
.+++|+||+||||||+++.+.+.......+..+.-+. ..+. .......+. ...+.....+|. ..++. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~-------~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFE-------NALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHH-------HHHHHHhc
Confidence 4689999999999999999876543222221111111 0000 000000000 000100111222 22222 4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
.+|+++++||+. |+.. +..+++ ....|..++.++|..+...
T Consensus 73 ~~pd~ii~gEir---d~e~----~~~~l~-~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMR---DLET----IRLALT-AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCC---CHHH----HHHHHH-HHHcCCEEEEEecCCcHHH
Confidence 689999999995 5543 223343 3457889999999876543
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.88 E-value=2.4e-05 Score=85.82 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=57.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccch-HHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF-DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~-d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~ 581 (803)
+..++|+||+|||||||++.+++..... .+...-.+...+... .+.. .+.... ...+ .....+.+.... +...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~-~l~~~~-~~~~--~~~~~~~~~l~~-~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYV-HLFYSK-GGQG--LAKVTPKDLLQS-CLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEE-EEEecC-CCCC--cCccCHHHHHHH-HhcC
Confidence 5689999999999999999998754211 111000010011000 0000 000000 0001 111122222221 2258
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
+|+++++|||.. ... ..+++.+...+..++.++|..+....
T Consensus 218 ~pd~ii~gE~r~-------~e~-~~~l~a~~~g~~~~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 218 RPDRIILGELRG-------DEA-FDFIRAVNTGHPGSITTLHAGSPEEA 258 (308)
T ss_pred CCCeEEEeccCC-------HHH-HHHHHHHhcCCCeEEEEEeCCCHHHH
Confidence 899999999995 122 24566665433456999998775443
No 445
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.81 E-value=8.8e-05 Score=85.08 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=79.8
Q ss_pred CceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccc-cccc-ccccchHHHhhh-CCc---CCCcc-C
Q 003681 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV-PAES-ASIPYFDAIMLH-MKS---YDSPA-D 561 (803)
Q Consensus 493 ~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~V-pa~~-a~i~~~d~I~~~-i~~---~d~l~-~ 561 (803)
+..+++++ + |+.++|+|+||+|||||+++|++..... .|.+. -.+. ..+. .++.. ++. ...+. .
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~gvI~~~Gerg~ev~---e~~~~~l~~~~l~r~v~vv 219 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD-LNVIALIGERGREVR---EFIERDLGPEGLKRSIVVV 219 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEEecCCccHH---HHHHhhcChhhhcCeEEEE
Confidence 44566666 4 8999999999999999999998865321 12111 0011 1111 11111 111 00110 1
Q ss_pred CccchHHHHHHH--------HHHHHhCCCCeEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHH--
Q 003681 562 GKSSFQVEMSEI--------RSIVTATTSRSLVLID-----------------EI--CRGTETAKGTCIAGSIIETLD-- 612 (803)
Q Consensus 562 ~~Stfs~em~~l--------~~iLa~a~~psLLLLD-----------------EP--~sGLD~~~g~~L~~alle~L~-- 612 (803)
..+.-+..++-. +.-++.-...=|+++| || ++|+||.....+. .+++.+.
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~-~ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP-KLLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHHHhcCC
Confidence 111111222211 1122224566677888 75 7899998877775 7888876
Q ss_pred hcCC-----EEEEEccChhhhhCcccccccccceeE
Q 003681 613 NIGC-----LGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 613 ~~g~-----tvIivTH~~el~~l~~~~~~v~~~~m~ 643 (803)
+.|. ||++.+|+++. ..+++...+..+++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Iv 333 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFV 333 (438)
T ss_pred CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEE
Confidence 3575 99999999874 444444444455544
No 446
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.76 E-value=0.00016 Score=85.63 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=74.4
Q ss_pred chHHHHHHHH-HHHHhCC----CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003681 565 SFQVEMSEIR-SIVTATT----SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 565 tfs~em~~l~-~iLa~a~----~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~ 639 (803)
.++.++++.. .+++.+. +|+++|+|||++|+|+.....+. .++..+.+ +.+||++||++.++..+++.-.+..
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 4566665543 3444433 47999999999999999988887 66666654 7999999999998875543222111
Q ss_pred ceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHc-C--CCHHHHHHHHHHHH
Q 003681 640 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE-G--VPETIIQRAEDLYI 689 (803)
Q Consensus 640 ~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~-G--lp~~Ii~rA~~l~~ 689 (803)
. ..++. |+.-+.-..++.--.++|+|+ | +.+.-+..|++++.
T Consensus 518 ~-----~~~~~---t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll~ 562 (563)
T TIGR00634 518 E-----GLDGR---TATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELLE 562 (563)
T ss_pred c-----cCCCc---EEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 1 11121 222222223335556899999 3 46777888888763
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.74 E-value=0.00012 Score=68.06 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHH--HHHHHHHHHhC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE--MSEIRSIVTAT 580 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~e--m~~l~~iLa~a 580 (803)
+..+.|+||.|+||||+++.++.... +.+..+ ..+. .......... ....+ ...........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v----~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 82 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF--RPGAPF----LYLN-ASDLLEGLVV---------AELFGHFLVRLLFELAEK 82 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCe----EEEe-hhhhhhhhHH---------HHHhhhhhHhHHHHhhcc
Confidence 35689999999999999999987543 111100 0000 0000000000 00000 11222233446
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----hcCCEEEEEccChhh
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLD-----NIGCLGIVSTHLHGI 627 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~-----~~g~tvIivTH~~el 627 (803)
.++.++++||.-.. ++.....+. .+++.+. ..++.+|++|+....
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNALL-RVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHHH-HHHHhcCceeccCCCeEEEEecCcccc
Confidence 78899999999876 343444444 4444443 257888999887653
No 448
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.72 E-value=0.00043 Score=79.10 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=98.5
Q ss_pred CcceEEEeccCccccccCCCceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHhhhh------------------
Q 003681 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------ 531 (803)
Q Consensus 474 g~~~i~l~~l~~~~~~~~~~~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~laq------------------ 531 (803)
++.-+++++++-. ...+...+.++|| |++++|.|-.|-|-+.|+..|+|+...+.
T Consensus 254 g~~vL~V~~L~v~---~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 254 GEVVLEVEDLSVK---DRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCeEEEEeeeEee---cCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 4445677777522 1233567888998 89999999999999999999999872211
Q ss_pred ----cCccccccc---ccc---cchHHHh-hhC---------------------------CcC-CCccCCccchHHHHHH
Q 003681 532 ----CGLMVPAES---ASI---PYFDAIM-LHM---------------------------KSY-DSPADGKSSFQVEMSE 572 (803)
Q Consensus 532 ----~G~~Vpa~~---a~i---~~~d~I~-~~i---------------------------~~~-d~l~~~~Stfs~em~~ 572 (803)
.-.+||.++ +.+ +..+++. ... .+. .+......++|.+-+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 112445433 111 1112211 111 111 0111112233333222
Q ss_pred HHHHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCcccccccccc
Q 003681 573 IRSIVTA--TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYK 640 (803)
Q Consensus 573 l~~iLa~--a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el-~~l~~~~~~v~~~ 640 (803)
.. ++++ ..+|+|+|+.+||+|+|......+. .-+-..++.|+.|+++|-++++ ..++++...+..+
T Consensus 411 K~-IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~-~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 411 KL-ILARELARRPDLLIAAQPTRGLDVGAIEFIH-ERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred hh-hhhhhhccCCCEEEEcCCCccccHHHHHHHH-HHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 22 4444 7999999999999999998877776 4445567789999998888754 4666654444333
No 449
>PRK10869 recombination and repair protein; Provisional
Probab=97.67 E-value=0.00029 Score=83.26 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=74.7
Q ss_pred chHHHHHH-HHHHHHhC----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003681 565 SFQVEMSE-IRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 565 tfs~em~~-l~~iLa~a----~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~~~~v~~ 639 (803)
.++.++++ +..+++.+ .+|+++|+|||++|+|...+..+. .++..+.+ +.++|++||++.++.+++..-.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 34555444 44444443 468999999999999999988886 66777754 6899999999998876554322211
Q ss_pred ceeEEEEeCCceeeeeEEeeCcCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 003681 640 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 689 (803)
Q Consensus 640 ~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~G---lp~~Ii~rA~~l~~ 689 (803)
. ..++ .||.-+.-..++.--.++|+|+| +.+.-+..|++++.
T Consensus 508 ~-----~~~~---~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 508 E-----TDGG---MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred c-----ccCC---eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 1 1112 12222222233455678999993 46777888988863
No 450
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.65 E-value=0.0002 Score=75.45 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.4
Q ss_pred CCCCeEEEEeCCCC------CCCHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 580 TTSRSLVLIDEICR------GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 580 a~~psLLLLDEP~s------GLD~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
..+|++||+| |.+ ..|+.....+...+.+...+.|+++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999 654 468877777765444444566999999999753
No 451
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=6.1e-05 Score=93.98 Aligned_cols=132 Identities=19% Similarity=0.282 Sum_probs=86.9
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHHHhHh--------hhhcCc----ccc-cccccccchHHHhhhCCcC
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------LGICGL----MVP-AESASIPYFDAIMLHMKSY 556 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Iagl~~--------laq~G~----~Vp-a~~a~i~~~d~I~~~i~~~ 556 (803)
..+++|++. |+++.+.||.||||||||+.++|-.. +.-.|. +++ ...+++++.|--+.+|++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 468899887 89999999999999999999999762 111222 222 3345566666556666665
Q ss_pred CCccCCcc------chH--------HHHHH-HHHHH------------------------------HhCCCCeEEEEeCC
Q 003681 557 DSPADGKS------SFQ--------VEMSE-IRSIV------------------------------TATTSRSLVLIDEI 591 (803)
Q Consensus 557 d~l~~~~S------tfs--------~em~~-l~~iL------------------------------a~a~~psLLLLDEP 591 (803)
+.+....+ ... ..|.+ +..++ ..+.+++.+.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 55432211 000 00111 11111 11578999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 592 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 592 ~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
++|||...+..++..+.+.-+..+.|.+++=|..
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQP 321 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccC
Confidence 9999999999998555555556688888888875
No 452
>PRK04296 thymidine kinase; Provisional
Probab=97.64 E-value=0.00033 Score=71.52 Aligned_cols=114 Identities=19% Similarity=0.054 Sum_probs=59.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh-cCccc-ccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMV-PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq-~G~~V-pa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a 580 (803)
|.+.+|+||.|+||||++..++.-...+. ...++ |.-..... ...+..+++..-.. ........-...+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 57899999999999999877754332221 11111 11000111 11233333321000 000111111111111 34
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 581 ~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
.+.++|++||.-. ++.. .+ ..+++.+++.|.++|++.++.+
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCeEEEEecCcc
Confidence 5779999999932 3332 23 3677888889999999999944
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.63 E-value=0.00018 Score=80.21 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCccccccc-ccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~ 581 (803)
+.+++|+||+||||||+|+.+.+.......+..+..+. ..+. .......+... .+.....+|... +..++ -.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~-evg~~~~~~~~~---l~~~l--r~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQR-EVGLDTLSFANA---LRAAL--RE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEcc-ccCCCCcCHHHH---HHHhh--cc
Confidence 57899999999999999999876432111121111110 0000 00000000000 000001122111 11122 47
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003681 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~ 628 (803)
+|+++++||+. |+..... .++ ....|..++.++|-.+..
T Consensus 195 ~pd~i~vgEir---d~~~~~~----~l~-aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 DPDVILIGEMR---DLETVEL----ALT-AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCCEEEEeCCC---CHHHHHH----HHH-HHHcCCcEEEEEcCCCHH
Confidence 99999999996 7655432 223 346688999999975543
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.62 E-value=0.00015 Score=74.66 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCC-----CCCCHHHHHHHHHHHHHHHHh
Q 003681 580 TTSRSLVLIDEIC-----RGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 580 a~~psLLLLDEP~-----sGLD~~~g~~L~~alle~L~~ 613 (803)
+.+|+++++|||+ +|+|+.....+. .++..+++
T Consensus 168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 168 TNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred hhcccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 7899999999999 999999988886 66666643
No 455
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.54 E-value=0.0001 Score=82.57 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003681 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 569 em~~l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~~ 633 (803)
|+++.+.+++-+...++.++|||.+-||...+...+ ..++.+.+...-+|++.||+.+.++...
T Consensus 218 elqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA-~~IRsl~~p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 218 ELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA-ITIRSLINPDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred hhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH-HHHHHhhCCCCeEEEEEeechHHHhhhc
Confidence 344444455558899999999999999999998887 7788888888899999999998876543
No 456
>PRK09183 transposase/IS protein; Provisional
Probab=97.53 E-value=0.00032 Score=75.28 Aligned_cols=103 Identities=18% Similarity=0.272 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh-CC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TT 581 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~-a~ 581 (803)
++.++|+||+|+|||+|+..|+.... +.|..+- ++. ...++..+..... . ..+...+.. ..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~----~~~-~~~l~~~l~~a~~--~---------~~~~~~~~~~~~ 163 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVR----FTT-AADLLLQLSTAQR--Q---------GRYKTTLQRGVM 163 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEE----EEe-HHHHHHHHHHHHH--C---------CcHHHHHHHHhc
Confidence 68899999999999999999966433 2232110 111 1112211110000 0 011122222 56
Q ss_pred CCeEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 582 SRSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 582 ~psLLLLDEP~sG-LD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
.++++++||.+.. .+......+ ..++....+.+ .+|++|+..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~l-f~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLF-FQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHH-HHHHHHHHhcC-cEEEecCCC
Confidence 7899999999864 555443344 46666665555 467777763
No 457
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.53 E-value=5.8e-05 Score=70.47 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=26.9
Q ss_pred ceeeeccCC----CcEEEEEcCCCCCchHHHHHHH
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSIC 524 (803)
Q Consensus 494 ~~VlndVsL----Gei~~ItGPNGsGKSTLLr~Ia 524 (803)
..+++++++ |++++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456777777 6899999999999999999975
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00075 Score=77.08 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh---cCcccccccccccchHHH--hh-hCCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAI--ML-HMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq---~G~~Vpa~~a~i~~~d~I--~~-~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
|++++++||||+||||+++.|++...+.. .+..+..+...++.++++ |. .++..-.... .-.++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~-------~~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK-------DIADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC-------CHHHHHHH
Confidence 78999999999999999999998643322 223344444444444332 22 2222111000 11223345
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHH
Q 003681 577 VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 577 La~a~~psLLLLDEP~sGLD~~~ 599 (803)
+..+.+.+++|+|.+ |....+
T Consensus 264 l~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 264 LHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHhcCCCEEEecCC--CCCcch
Confidence 556788899999975 555544
No 459
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.43 E-value=0.00025 Score=81.09 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred Cceeeecc-CC--CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCc--ccccccccccch-HHHhhhCCcCCC-ccCCccc
Q 003681 493 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIPYF-DAIMLHMKSYDS-PADGKSS 565 (803)
Q Consensus 493 ~~~VlndV-sL--Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~--~Vpa~~a~i~~~-d~I~~~i~~~d~-l~~~~St 565 (803)
+..+++.+ .+ |+.++|+|+||+|||||+++|++..... .|. .+......+..+ ...+..-+.... +....+.
T Consensus 143 GiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 143 GIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred CCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCC
Confidence 44555553 12 7999999999999999999999865321 111 111121222111 111111111111 1122334
Q ss_pred hHHHHHHHHHHHH--------hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003681 566 FQVEMSEIRSIVT--------ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 566 fs~em~~l~~iLa--------~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~ 631 (803)
.+..++......+ .-.++-|+++|++|+..|+. ..+. ..+...-..|-+..+.||...+.+.+
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCeeeeeeccchhHHHHh
Confidence 4455544333222 24789999999999999996 4443 33444443477778888866665543
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00052 Score=64.02 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=55.4
Q ss_pred EEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh---CCC
Q 003681 506 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA---TTS 582 (803)
Q Consensus 506 ~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~---a~~ 582 (803)
++|+||.|+||||+.+.++... +..+ ..+.. ..+.. . ......+.+..++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~----~~i~~-~~~~~---------~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPF----IEIDG-SELIS---------S---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEE----EEEET-THHHT---------S---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccc----ccccc-ccccc---------c---ccccccccccccccccccccc
Confidence 5799999999999999998753 1100 00000 00110 0 111222233333333 235
Q ss_pred CeEEEEeCCCCCCCHH------HHHHHHHHHHHHHHh-----cCCEEEEEccChhhh
Q 003681 583 RSLVLIDEICRGTETA------KGTCIAGSIIETLDN-----IGCLGIVSTHLHGIF 628 (803)
Q Consensus 583 psLLLLDEP~sGLD~~------~g~~L~~alle~L~~-----~g~tvIivTH~~el~ 628 (803)
|.++++||.-.-.... ....+...++..+.+ .+..+|++|++.+..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 8999999985443332 334445566666643 236888899885543
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.38 E-value=0.00012 Score=74.47 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHhH
Q 003681 505 LFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 505 i~~ItGPNGsGKSTLLr~Iagl~ 527 (803)
+++|+||||||||||.++|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999875
No 462
>PRK06893 DNA replication initiation factor; Validated
Probab=97.35 E-value=0.00061 Score=71.57 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhh-cCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCC
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq-~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~ 582 (803)
..+.|.||.|+|||+|++.|+.-..-.. ...|++.. . . ..+. ..++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-------~--------~-------~~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-------K--------S-------QYFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-------H--------h-------hhhh------HHHHhhccc
Confidence 4578999999999999999987532211 01111110 0 0 0000 123344567
Q ss_pred CeEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 583 RSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 583 psLLLLDEP~sGL-D~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
.++|++||+.... +......+ ..++....+.|.++|++|++..-
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCcEEEEeCCCCh
Confidence 8999999998865 44333344 47777777777777777766543
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.34 E-value=0.00048 Score=69.90 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHh
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASL 528 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~ 528 (803)
|+.++|+|||||||||++++++++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 68899999999999999999988753
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00017 Score=60.86 Aligned_cols=26 Identities=46% Similarity=0.717 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHh
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASL 528 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~ 528 (803)
|.++.|+||||+||||+|..|.-++.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46899999999999999999976543
No 465
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.28 E-value=0.0026 Score=66.19 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=64.7
Q ss_pred cCCCcEEEEEcCCCCCchHHHHHHHHhH-hhhhcCccccccccc---------ccc-hHHHh--hhCCcCCCccC-----
Q 003681 500 VDMQSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPAESAS---------IPY-FDAIM--LHMKSYDSPAD----- 561 (803)
Q Consensus 500 VsLGei~~ItGPNGsGKSTLLr~Iagl~-~laq~G~~Vpa~~a~---------i~~-~d~I~--~~i~~~d~l~~----- 561 (803)
+.-|++++|.||+|+|||||...++.-. .-...+.++..+... ++. +.... .++...|....
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~ 96 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKEDE 96 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEccccccccc
Confidence 3337899999999999999999876322 112223344322110 010 11111 01111111100
Q ss_pred -CccchH-HH-HHHHHHHHHhC-CCCeEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 562 -GKSSFQ-VE-MSEIRSIVTAT-TSRSLVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 562 -~~Stfs-~e-m~~l~~iLa~a-~~psLLLLDEP~sGL--D~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
....+. .+ ..++..++... .+++++++|-++.=+ ++.....+...+.+.+++.|+|+|+++|...
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 97 WSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred cccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 000111 11 11222333333 257788888876542 3433345555677777888999999999643
No 466
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.0016 Score=73.42 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhh-hcCcccccccccccchHHHhhhCCcC-CCccCCccchHHHHHHHHHHHHhC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~la-q~G~~Vpa~~a~i~~~d~I~~~i~~~-d~l~~~~Stfs~em~~l~~iLa~a 580 (803)
|+++.|.|++|+|||||+.+++...... ....|+..+.. ..++..-..+++.. +++..... ..+.++...+. .
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e---~~le~I~~~i~-~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAE---TNLEDILASIE-E 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEcc---CcHHHHHHHHH-h
Confidence 7899999999999999999998654322 12334444322 12222222344432 22211111 12333333332 3
Q ss_pred CCCeEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 581 TSRSLVLIDEICR----GTE-----TAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 581 ~~psLLLLDEP~s----GLD-----~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
.+|++|++|+... .+| ...-..++..+.+..++.++++|++.|-.
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 5899999999732 222 12223344456666778899999999854
No 467
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0033 Score=71.21 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCc---ccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh-
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGL---MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA- 579 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~---~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~- 579 (803)
.+++|+||||+||||++..|++... ..|. .+.++...+.-.+++-...... ++...... .-..+...+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~l-gipv~v~~---d~~~L~~aL~~l 315 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTI-GFEVIAVR---DEAAMTRALTYF 315 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhc-CCcEEecC---CHHHHHHHHHHH
Confidence 5789999999999999999987543 2232 3344333333333322211100 01000000 11223334433
Q ss_pred --CCCCeEEEEeCCCCCCC
Q 003681 580 --TTSRSLVLIDEICRGTE 596 (803)
Q Consensus 580 --a~~psLLLLDEP~sGLD 596 (803)
..+.++||+|-+++.-.
T Consensus 316 k~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HhccCCCEEEEeCccccCc
Confidence 23679999998888553
No 468
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.00057 Score=86.61 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=53.8
Q ss_pred CCccchHHHHHHHHH-HHHhC----------CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 561 DGKSSFQVEMSEIRS-IVTAT----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 561 ~~~Stfs~em~~l~~-iLa~a----------~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
....++|.|++.+.. +++.+ .+|+++||||||+|+|+.....++ .+++.+.+.|.+|+|+||+.++..
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~l~~~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAI-GILDAIREGSKMIGIISHVPEFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHH
Confidence 345678888876544 23322 279999999999999998888876 677778778999999999999875
Q ss_pred C
Q 003681 630 L 630 (803)
Q Consensus 630 l 630 (803)
.
T Consensus 1025 ~ 1025 (1042)
T TIGR00618 1025 R 1025 (1042)
T ss_pred h
Confidence 4
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0015 Score=75.81 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhc---CcccccccccccchHHHh--h-hCCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGIC---GLMVPAESASIPYFDAIM--L-HMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~---G~~Vpa~~a~i~~~d~I~--~-~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
|.+++++||||+||||++..|++.....+. -..++++...+.-.+++- . .++..-.. .. .-.+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~----~~---~~~Dl~~a 328 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA----VK---DAADLRLA 328 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----cC---CchhHHHH
Confidence 568999999999999999999987654432 224555544343333322 1 12211000 00 01122223
Q ss_pred HHhCCCCeEEEEeCCCCC
Q 003681 577 VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 577 La~a~~psLLLLDEP~sG 594 (803)
+..+.+.+++|+|.++.+
T Consensus 329 L~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 329 LSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHhccCCCeEEeCCCCcC
Confidence 445667789999997655
No 470
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0012 Score=74.40 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh---cCcccccccccccchHHH--hh-hCCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAI--ML-HMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq---~G~~Vpa~~a~i~~~d~I--~~-~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
|++++++||||+||||++..|+......+ ...++..+...+.-.+++ |. .++..-..... -.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~-------~~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD-------GGDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCC-------cccHHHH
Confidence 68999999999999999999988654322 112344433333333322 11 22221100011 1123345
Q ss_pred HHhCCCCeEEEEeCCCCC
Q 003681 577 VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 577 La~a~~psLLLLDEP~sG 594 (803)
+....+.+++|+|+++..
T Consensus 210 l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHhcCCCEEEEcCCCCC
Confidence 566778899999999876
No 471
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0012 Score=80.13 Aligned_cols=89 Identities=18% Similarity=0.254 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhc---CcccccccccccchHHHh---hhCCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGIC---GLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~---G~~Vpa~~a~i~~~d~I~---~~i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
|++++++||||+||||++..|++.....+. -..+..+...+.-.+++. ..++..-.. .. .-..+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~---~~----~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHA---VK----DAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccc---cC----CHHHHHHH
Confidence 689999999999999999999987643321 124445444443333322 222221111 01 22345566
Q ss_pred HHhCCCCeEEEEeCCCCC-CCHH
Q 003681 577 VTATTSRSLVLIDEICRG-TETA 598 (803)
Q Consensus 577 La~a~~psLLLLDEP~sG-LD~~ 598 (803)
+..+.+.++||+|=+++. .|..
T Consensus 258 l~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 258 LAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred HHHhcCCCEEEEeCCCCCccCHH
Confidence 667778899999988855 3443
No 472
>PRK03918 chromosome segregation protein; Provisional
Probab=97.19 E-value=0.00076 Score=83.69 Aligned_cols=69 Identities=10% Similarity=-0.013 Sum_probs=52.1
Q ss_pred ccchHHHHHHHHH-----HHH--hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003681 563 KSSFQVEMSEIRS-----IVT--ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 563 ~Stfs~em~~l~~-----iLa--~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l~~ 632 (803)
..++|.++++... +++ .+.+|+++|+||||+|+|+.....+. .++..+...+.++|++||+.++...++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~-~~l~~~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLV-DIMERYLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHhCC
Confidence 3567778776432 222 26789999999999999999988887 455556666789999999998766544
No 473
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.18 E-value=0.0029 Score=65.49 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCCchHHHHHHHHhHh
Q 003681 500 VDMQSLFLLTGPNGGGKSSLLRSICAASL 528 (803)
Q Consensus 500 VsLGei~~ItGPNGsGKSTLLr~Iagl~~ 528 (803)
+.-|+++.|+||+|+|||||+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 44478999999999999999999987654
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.18 E-value=0.0018 Score=74.86 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhh-hcCcccccccccccchHHHhhhCCcC-CCccCCccchHHHHHHHHHHHHhC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~la-q~G~~Vpa~~a~i~~~d~I~~~i~~~-d~l~~~~Stfs~em~~l~~iLa~a 580 (803)
|+++.|.|++|+|||||+.+++....-. ....|+..+.. ..+...-..+++.. +++..... ..+.++...+. .
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e---~~~~~I~~~i~-~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSE---TNWEQICANIE-E 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCC---CCHHHHHHHHH-h
Confidence 7899999999999999999997654221 12235544322 11221112233321 11111111 12333333333 3
Q ss_pred CCCeEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003681 581 TSRSLVLIDEICRGT---------ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 581 ~~psLLLLDEP~sGL---------D~~~g~~L~~alle~L~~~g~tvIivTH~~e 626 (803)
.+++++++|....=. +......++..+.+..++.|.|+|+++|...
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 578999999875421 1222334444566666888999999999654
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.18 E-value=0.0023 Score=66.66 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred cCCCcEEEEEcCCCCCchHHHHHHHHhHhhh-------hcCccccccccc-ccchHHHhhhCCc-----CCCccCCccch
Q 003681 500 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESAS-IPYFDAIMLHMKS-----YDSPADGKSSF 566 (803)
Q Consensus 500 VsLGei~~ItGPNGsGKSTLLr~Iagl~~la-------q~G~~Vpa~~a~-i~~~d~I~~~i~~-----~d~l~~~~Stf 566 (803)
+.-|+++.|+||+|+|||||+.+++...... ....|+..+... ...+.++...++. .+++......-
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4447999999999999999999998654322 222334333211 1111122222111 11111100000
Q ss_pred HHHH----HHHHHHHHhCCCCeEEEEeCCCCCC----C----HHHHHHHHHHHHHHH----HhcCCEEEEEccCh
Q 003681 567 QVEM----SEIRSIVTATTSRSLVLIDEICRGT----E----TAKGTCIAGSIIETL----DNIGCLGIVSTHLH 625 (803)
Q Consensus 567 s~em----~~l~~iLa~a~~psLLLLDEP~sGL----D----~~~g~~L~~alle~L----~~~g~tvIivTH~~ 625 (803)
..++ .++...+....++++|++|-.++=. + ..++...+..++..| .+.++++|+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1122 2233333333489999999997521 1 123333333333333 46799999988754
No 476
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.17 E-value=0.0012 Score=75.12 Aligned_cols=101 Identities=19% Similarity=0.316 Sum_probs=57.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccch-HHHhhhCCcCCCccCCccchHHH-HHHHHHHH--Hh
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF-DAIMLHMKSYDSPADGKSSFQVE-MSEIRSIV--TA 579 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~-d~I~~~i~~~d~l~~~~Stfs~e-m~~l~~iL--a~ 579 (803)
.-+.|.||+|+|||++.|.++.... .. .+... ..+... +..+ .+.+..++ +.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~-----~~------fi~i~~s~l~~k-------------~~ge~~~~lr~lf~~A~ 235 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTT-----AT------FIRVVGSEFVQK-------------YLGEGPRMVRDVFRLAR 235 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC-----CC------EEEEehHHHHHH-------------hcchhHHHHHHHHHHHH
Confidence 4588999999999999999987421 10 00000 001100 0001 11222232 34
Q ss_pred CCCCeEEEEeCC----------CCCCCHHHHHHHHHHHHHHHHh----cCCEEEEEccChhhhh
Q 003681 580 TTSRSLVLIDEI----------CRGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 580 a~~psLLLLDEP----------~sGLD~~~g~~L~~alle~L~~----~g~tvIivTH~~el~~ 629 (803)
...|++|++||. .+|.|......+ ..++..+.. .+..+|++||..+..+
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l-~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRIL-LELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHH-HHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 678999999994 344454333333 355555532 3567999999876544
No 477
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.00073 Score=74.90 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhc-Ccccccccc---------cccchHHHhhhCCcCCC-ccCCccchHHHHHH
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGIC-GLMVPAESA---------SIPYFDAIMLHMKSYDS-PADGKSSFQVEMSE 572 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~-G~~Vpa~~a---------~i~~~d~I~~~i~~~d~-l~~~~Stfs~em~~ 572 (803)
.-+++.||.|.||||+.+.++..+.-..- ....|+... .-|.+. .+..... -..+..+-...+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~----~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY----EITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEE----EEecccccccccccCCCcCHHH
Confidence 45789999999999999999887542111 001122110 011111 0110000 00111001122334
Q ss_pred HHHHHHh------CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003681 573 IRSIVTA------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 573 l~~iLa~------a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el 627 (803)
+..+... ....++ ++|||+.++|+.....+. .+++... .++++|++||+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV-~iiEp~~~Ld~~a~naLL-k~LEep~-~~~~~Ilvth~~~~ 155 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRV-ILIHPAESMNLQAANSLL-KVLEEPP-PQVVFLLVSHAADK 155 (325)
T ss_pred HHHHHHHHhhCcccCCceE-EEEechhhCCHHHHHHHH-HHHHhCc-CCCEEEEEeCChHh
Confidence 4443333 233444 467999999998887776 5666654 46889999999764
No 478
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.0016 Score=70.16 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhh--hcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCC
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~la--q~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~ 581 (803)
..+.|+||.|+|||.|+.+|+.-+.-. ....|++. ..++..+.. .| ......+..+.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~--------~~l~~~l~~---------~~----~~~~~~~~~~~ 176 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF--------VEGFGDLKD---------DF----DLLEAKLNRMK 176 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH--------HHHHHHHHH---------HH----HHHHHHHHHhc
Confidence 457999999999999999998754321 11122221 112221100 11 12223455577
Q ss_pred CCeEEEEeCCCC---CCC---HHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 582 SRSLVLIDEICR---GTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 582 ~psLLLLDEP~s---GLD---~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
+.+|||||+... |.. ......+. .++......+..+|++|+..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf-~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMY-SVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHH-HHHHHHHHCCCCEEEECCCC
Confidence 899999999955 432 22233443 67777766677788888864
No 479
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0028 Score=74.09 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh---cCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHh
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~ 579 (803)
|++++|+||+|+||||++..|+....... ...++..+...+.-.+++... +..-.+.... ......+..++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y-a~iLgv~v~~---a~d~~~L~~aL~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY-GRQLGIAVHE---ADSAESLLDLLER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh-hcccCceeEe---cCcHHHHHHHHHH
Confidence 78999999999999999999987654322 223344433333322332221 1111110000 0112345556666
Q ss_pred CCCCeEEEEeCCCCC
Q 003681 580 TTSRSLVLIDEICRG 594 (803)
Q Consensus 580 a~~psLLLLDEP~sG 594 (803)
..+.++||+|.|+.+
T Consensus 426 l~~~DLVLIDTaG~s 440 (559)
T PRK12727 426 LRDYKLVLIDTAGMG 440 (559)
T ss_pred hccCCEEEecCCCcc
Confidence 778999999999875
No 480
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0073 Score=65.36 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhh-hhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~l-aq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~ 581 (803)
++.++++||||+||||+++.|++...- .....++..+...+....++-......+ +......-...+.+...-++...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC-ceEEecCCHHHHHHHHHHHHhcC
Confidence 478999999999999999999886532 1122233333332333332222111111 10000001112222222223345
Q ss_pred CCeEEEEeCCCCCC-CHHHHHHH
Q 003681 582 SRSLVLIDEICRGT-ETAKGTCI 603 (803)
Q Consensus 582 ~psLLLLDEP~sGL-D~~~g~~L 603 (803)
+.+++|+|-|++.- |...-.++
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el 176 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEM 176 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHH
Confidence 78999999999974 44433333
No 481
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.12 E-value=0.0022 Score=74.02 Aligned_cols=119 Identities=20% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHhHhh-hhcCcccccccccccchHHHhhhCCcC-CCccCCccchHHHHHHHHHHHHh
Q 003681 502 MQSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 502 LGei~~ItGPNGsGKSTLLr~Iagl~~l-aq~G~~Vpa~~a~i~~~d~I~~~i~~~-d~l~~~~Stfs~em~~l~~iLa~ 579 (803)
-|+++.|.|+.|+|||||+.+++..... .....|+..+.. ..++.....+++.. +++..... ..+.++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~~~~~l~~~~e---~~l~~i~~~i~- 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGLPSDNLYLLAE---TNLEAILATIE- 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCCChhcEEEeCC---CCHHHHHHHHH-
Confidence 3789999999999999999999875431 122345544432 11222223334431 12111111 12333333332
Q ss_pred CCCCeEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 580 TTSRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 580 a~~psLLLLDEP~sGLD---------~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
-.+++++++|+...-.. ...-..++..+.+..++.|+++|+++|-.
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvt 208 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVT 208 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 35799999999864322 12223444456666788899999999953
No 482
>PRK12377 putative replication protein; Provisional
Probab=97.11 E-value=0.0016 Score=69.59 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~p 583 (803)
..++|.||.|+|||.|+..|+..+. +.|..| ..+ ....++..+... +... .....++..+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v----~~i-~~~~l~~~l~~~---------~~~~-~~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV----IVV-TVPDVMSRLHES---------YDNG-QSGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCe----EEE-EHHHHHHHHHHH---------Hhcc-chHHHHHHHhcCC
Confidence 4689999999999999999987543 223222 111 112222222110 0000 0112456668899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
+||+|||.+.--.......+...+++.-.+.+..+|++|...
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999998765555566666688888777667778888753
No 483
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.002 Score=83.61 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=52.0
Q ss_pred CccchHHHHHHH-------HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCCEEEEEccChhhhhC
Q 003681 562 GKSSFQVEMSEI-------RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD----NIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 562 ~~Stfs~em~~l-------~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~----~~g~tvIivTH~~el~~l 630 (803)
....++.+++++ ..+.+.+.+|.++||||||+|+|+.....+...+.+.+. ..|.++|++||+.++...
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 345788888873 222333789999999999999999998888755554432 247899999999988653
No 484
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.06 E-value=0.001 Score=70.94 Aligned_cols=106 Identities=26% Similarity=0.330 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~p 583 (803)
..+.|.|+.|+|||+|+..|+-.+.. .|..+ ..+ ....++..+... |...-.....++..+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~i-t~~~l~~~l~~~---------~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LII-TVADIMSAMKDT---------FSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEE-EHHHHHHHHHHH---------HhhccccHHHHHHHhccC
Confidence 36899999999999999999775432 23211 111 122233222110 100000112344556789
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 584 sLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
+||++||++.--+......++..++++-.+....+|++|...
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 999999999877666666677788887666567778887753
No 485
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.06 E-value=0.0033 Score=66.70 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhH
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~ 527 (803)
.+++|+||||+||||+++.+....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 489999999999999999997653
No 486
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.06 E-value=0.0036 Score=66.77 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.7
Q ss_pred eccCCCcEEEEEcCCCCCchHHHHHHHHhH
Q 003681 498 NTVDMQSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 498 ndVsLGei~~ItGPNGsGKSTLLr~Iagl~ 527 (803)
..+.-|++++|.||+|+|||||+.+++...
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344447899999999999999999987644
No 487
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0069 Score=68.75 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh--cCc---ccccccccccchHH--Hhhh-CCcCCCccCCccchHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI--CGL---MVPAESASIPYFDA--IMLH-MKSYDSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq--~G~---~Vpa~~a~i~~~d~--I~~~-i~~~d~l~~~~Stfs~em~~l~ 574 (803)
+.+++++||||+||||.+.-++....... .|. .+..+.....-..+ .+.. ++.. +.. .. ....+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~-~~----~~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKA-IE----SFKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEe-eC----cHHHHH
Confidence 46899999999999999999987654321 222 23333322222222 1222 3321 110 11 123455
Q ss_pred HHHHhCCCCeEEEEeCCCCCC
Q 003681 575 SIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 575 ~iLa~a~~psLLLLDEP~sGL 595 (803)
..+....+.++||+|++++..
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 566667889999999999875
No 488
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.04 E-value=0.0011 Score=78.23 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred CccchHHHHHHHHHHH-HhC----------CCCeEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003681 562 GKSSFQVEMSEIRSIV-TAT----------TSRSLVLIDEIC-RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 562 ~~Stfs~em~~l~~iL-a~a----------~~psLLLLDEP~-sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~ 629 (803)
....+|.++++...+. +.+ .+|+++|||||+ +++|+.....+. .++..+ .|.++|++||+.++..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~-~~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALL-SILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHH-HHHHhC--CCCeEEEEECchhchh
Confidence 3456788877754432 211 589999999998 789999888886 566666 4789999999987765
Q ss_pred Ccc
Q 003681 630 LPL 632 (803)
Q Consensus 630 l~~ 632 (803)
.++
T Consensus 542 ~~d 544 (562)
T PHA02562 542 KFD 544 (562)
T ss_pred hhh
Confidence 544
No 489
>PRK06526 transposase; Provisional
Probab=97.04 E-value=0.0023 Score=68.64 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCC
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~ 582 (803)
++.++|+||.|+|||+|...|+.-.. +.|..| .+.....++..+.... ... .....+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v-----~f~t~~~l~~~l~~~~----~~~-------~~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV-----LFATAAQWVARLAAAH----HAG-------RLQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCCch-----hhhhHHHHHHHHHHHH----hcC-------cHHHHHHHhcc
Confidence 46789999999999999999975332 233221 1111122232221110 001 11223444567
Q ss_pred CeEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 583 RSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 583 psLLLLDEP~sG-LD~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
++|||+||.+.- .++.....+ ..++....+.+ .+|++|+..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L-~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLF-FQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHH-HHHHHHHHhcC-CEEEEcCCC
Confidence 899999999864 455444334 46666555544 577777764
No 490
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.0012 Score=61.99 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhh-----c-Cccc--ccccccccchHHHhhhCCcCCCccCCccchHHHH-HHHH
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGI-----C-GLMV--PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM-SEIR 574 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq-----~-G~~V--pa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em-~~l~ 574 (803)
.++.|+||.|+||||+++.+..-..... . -.++ +.....-.....+...++..... .....++ ..+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~~~ 80 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSLLI 80 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHHHH
Confidence 5789999999999999999987653211 0 0112 11111112233444444433222 1112222 3344
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEccC
Q 003681 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 624 (803)
Q Consensus 575 ~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L-~~~g~tvIivTH~ 624 (803)
..+..... .+|++||.-. +. . ..++..+ ..+ .+.+..+|++.+.
T Consensus 81 ~~l~~~~~-~~lviDe~~~-l~--~-~~~l~~l-~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRV-VLLVIDEADH-LF--S-DEFLEFL-RSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTE-EEEEEETTHH-HH--T-HHHHHHH-HHHTCSCBEEEEEEESS
T ss_pred HHHHhcCC-eEEEEeChHh-cC--C-HHHHHHH-HHHHhCCCCeEEEEECh
Confidence 44443332 7999999865 42 1 3333233 333 3456677776665
No 491
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.02 E-value=0.0012 Score=83.67 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCccchHHHHHHHHHH-HHhC--------CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 561 DGKSSFQVEMSEIRSI-VTAT--------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 561 ~~~Stfs~em~~l~~i-La~a--------~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
....++|.+++.+..+ ++.+ .+|+++|+||||+|+|+.....+. .+++.+.+.|.+|+|+||..++.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEecHHHHHHh
Confidence 3456788888765443 3332 379999999999999998888876 7788888889999999998877653
No 492
>PRK08727 hypothetical protein; Validated
Probab=97.00 E-value=0.0029 Score=66.65 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHhHhhhhcCcccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003681 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 ei~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~~p 583 (803)
..+.|.||.|+|||.|+..++.-.. +.|. ...+++. .. +. ..+..++....+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~--~~~~----~~~y~~~-~~-----------------~~---~~~~~~~~~l~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE--QAGR----SSAYLPL-QA-----------------AA---GRLRDALEALEGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCC----cEEEEeH-HH-----------------hh---hhHHHHHHHHhcC
Confidence 4589999999999999999976422 1121 0011111 11 00 1122345556778
Q ss_pred eEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhcCCEEEEEccC
Q 003681 584 SLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 584 sLLLLDEP~sGL-D~~~g~~L~~alle~L~~~g~tvIivTH~ 624 (803)
++|++||...-. ++.....+. .++....+.|..+|++++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf-~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALF-DFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEeCcccccCChHHHHHHH-HHHHHHHHcCCeEEEECCC
Confidence 999999987654 344444554 6777777778889999986
No 493
>PRK01156 chromosome segregation protein; Provisional
Probab=96.99 E-value=0.0018 Score=80.78 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=52.2
Q ss_pred CccchHHHHHHHHHH-----HHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhcC--CEEEEEccChhhhhCc
Q 003681 562 GKSSFQVEMSEIRSI-----VTA--TTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIG--CLGIVSTHLHGIFSLP 631 (803)
Q Consensus 562 ~~Stfs~em~~l~~i-----La~--a~~psLLLLDEP~sGLD~~~g~~L~~alle-~L~~~g--~tvIivTH~~el~~l~ 631 (803)
....+|.+++....+ +++ +.+|++++|||||+|+|+.....+. .++. .+...+ .++|++||++++...+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~-~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLK-DIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 355678887765432 222 6789999999999999999988887 4444 444433 4899999999987765
Q ss_pred cc
Q 003681 632 LK 633 (803)
Q Consensus 632 ~~ 633 (803)
++
T Consensus 877 d~ 878 (895)
T PRK01156 877 DV 878 (895)
T ss_pred Ce
Confidence 54
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.97 E-value=0.0039 Score=64.82 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHhH-hhhhcCcccccccccccchHHHhhhCCcC-----C-Ccc---CCccchHHHHH
Q 003681 502 MQSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPAESASIPYFDAIMLHMKSY-----D-SPA---DGKSSFQVEMS 571 (803)
Q Consensus 502 LGei~~ItGPNGsGKSTLLr~Iagl~-~laq~G~~Vpa~~a~i~~~d~I~~~i~~~-----d-~l~---~~~Stfs~em~ 571 (803)
-|+++.|.|+.|+|||+|.-.++--. .....+.|+..+... ..+-..+..++.. + .+. .....+...+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE-ERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTSLN 93 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhhHH
Confidence 37899999999999999988775322 112233344333211 1111111111110 0 010 00011111122
Q ss_pred HHH----HHHHhCCCCeEEEEeCCCCCC-----CHHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003681 572 EIR----SIVTATTSRSLVLIDEICRGT-----ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 572 ~l~----~iLa~a~~psLLLLDEP~sGL-----D~~~g~~L~~alle~L~~~g~tvIivTH~~ 625 (803)
++. .++. -.+++++++| +.+.+ |+.........+++.+++.|+|+++++|..
T Consensus 94 ~l~~~~~~~i~-~~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~ 154 (224)
T TIGR03880 94 RIKNELPILIK-ELGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD 154 (224)
T ss_pred HHHHHHHHHHH-HhCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 222 2222 2457899999 43332 333333444578888888999999999964
No 495
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0028 Score=73.12 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHhHhhhhcC---cccccccccccchHHHhhhCCcCCCccCCccchHHHHHHHHHHHHhCC
Q 003681 505 LFLLTGPNGGGKSSLLRSICAASLLGICG---LMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 505 i~~ItGPNGsGKSTLLr~Iagl~~laq~G---~~Vpa~~a~i~~~d~I~~~i~~~d~l~~~~Stfs~em~~l~~iLa~a~ 581 (803)
-+.|.||.|+|||.|++.|+.-+.-...+ .|++++. .+..+...+... .+.++.... ..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~----f~~~~~~~~~~~------------~~~~f~~~~--~~ 193 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKEG------------KLNEFREKY--RK 193 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH----HHHHHHHHHhcc------------cHHHHHHHH--Hh
Confidence 37899999999999999998754321111 2222211 011111111100 011111111 13
Q ss_pred CCeEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhcCCEEEEEc-cChhh
Q 003681 582 SRSLVLIDEICRGTETAKG-TCIAGSIIETLDNIGCLGIVST-HLHGI 627 (803)
Q Consensus 582 ~psLLLLDEP~sGLD~~~g-~~L~~alle~L~~~g~tvIivT-H~~el 627 (803)
++++||+||+....+.... ..+. .++..+.+.|..+|++| |....
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf-~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHH-HHHHHHHHcCCeEEEECCCCHHH
Confidence 6899999999988776543 3454 67777777777788876 55543
No 496
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0025 Score=66.95 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=61.2
Q ss_pred EEEEcCCCCCchHHHHHHHHhHhhhhcCcccccc------cccc-------cchHHHhhhCCcCCCccCCccchHHHHHH
Q 003681 506 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE------SASI-------PYFDAIMLHMKSYDSPADGKSSFQVEMSE 572 (803)
Q Consensus 506 ~~ItGPNGsGKSTLLr~Iagl~~laq~G~~Vpa~------~a~i-------~~~d~I~~~i~~~d~l~~~~Stfs~em~~ 572 (803)
+.|+||.++||||+||=|+.++--...+ +.|.. ++.+ |+.+ +-.++.+.|..-+ +.+|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~-~l~kkv~IiDersEIag~~~gvpq~~-~g~R~dVld~cpk-----~~gm-- 210 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQ-FLPKKVGIIDERSEIAGCLNGVPQHG-RGRRMDVLDPCPK-----AEGM-- 210 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccc-cCCceEEEEeccchhhccccCCchhh-hhhhhhhcccchH-----HHHH--
Confidence 8999999999999999999987433221 22221 1111 1111 1111222111110 1111
Q ss_pred HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003681 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 573 l~~iLa~a~~psLLLLDEP~sGLD~~~g~~L~~alle~L~~~g~tvIivTH~~el~~l 630 (803)
. +.-+...|+++|+||.++-.|... +++. .+.|..+|-+-|=.++.++
T Consensus 211 -m-maIrsm~PEViIvDEIGt~~d~~A-------~~ta-~~~GVkli~TaHG~~iedl 258 (308)
T COG3854 211 -M-MAIRSMSPEVIIVDEIGTEEDALA-------ILTA-LHAGVKLITTAHGNGIEDL 258 (308)
T ss_pred -H-HHHHhcCCcEEEEeccccHHHHHH-------HHHH-HhcCcEEEEeeccccHHHh
Confidence 1 111357799999999999888743 3333 3569999999997666544
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.94 E-value=0.0018 Score=70.33 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhh---hcCcccccccccccchHHH--hhh-CCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPYFDAI--MLH-MKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~la---q~G~~Vpa~~a~i~~~d~I--~~~-i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
+.+++|+||||+||||++..++...... ....++..+........++ +.. ++.. .... ..-..+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p----~~~~---~~~~~l~~~ 266 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP----VKVA---RDPKELRKA 266 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc----eecc---CCHHHHHHH
Confidence 5789999999999999999998765432 2223444443322222222 211 1110 0000 112234556
Q ss_pred HHhCCCCeEEEEeCCC
Q 003681 577 VTATTSRSLVLIDEIC 592 (803)
Q Consensus 577 La~a~~psLLLLDEP~ 592 (803)
+..+.+.++||+|.||
T Consensus 267 l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 267 LDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHccCCCEEEEeCCC
Confidence 6666778999999885
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.0005 Score=69.62 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~ 527 (803)
|++++|+|||||||||++|+|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 6789999999999999999998764
No 499
>PTZ00035 Rad51 protein; Provisional
Probab=96.92 E-value=0.0059 Score=68.11 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCCcEEEEEcCCCCCchHHHHHHHHhHhhh-----hcC--ccccccccccc-chHHHhhhCCcC-----CCccCCccchH
Q 003681 501 DMQSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG--LMVPAESASIP-YFDAIMLHMKSY-----DSPADGKSSFQ 567 (803)
Q Consensus 501 sLGei~~ItGPNGsGKSTLLr~Iagl~~la-----q~G--~~Vpa~~a~i~-~~d~I~~~i~~~-----d~l~~~~Stfs 567 (803)
.-|+++.|+||||+|||||+.+++....+. ..| .|+..+...-+ .+.++..+++.. +++... ..+.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~-~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYA-RAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEE-ccCC
Confidence 337899999999999999999998765421 111 24444332111 122233333321 222111 1121
Q ss_pred -HHHHH-HHHHHHh--CCCCeEEEEeCCCCCC--------CHHHHHHHHHHHHHHH----HhcCCEEEEEccC
Q 003681 568 -VEMSE-IRSIVTA--TTSRSLVLIDEICRGT--------ETAKGTCIAGSIIETL----DNIGCLGIVSTHL 624 (803)
Q Consensus 568 -~em~~-l~~iLa~--a~~psLLLLDEP~sGL--------D~~~g~~L~~alle~L----~~~g~tvIivTH~ 624 (803)
.++.+ +..+... -.+.++|++|=.++-. +..++...+..++..| .+.++++|++.|-
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv 267 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQV 267 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecce
Confidence 12222 1111111 3578999999887632 2223333222333333 4678898888763
No 500
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.0044 Score=71.18 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHhHhhhh---cCcccccccccccchHHHh--hh-CCcCCCccCCccchHHHHHHHHHH
Q 003681 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM--LH-MKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Gei~~ItGPNGsGKSTLLr~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~--~~-i~~~d~l~~~~Stfs~em~~l~~i 576 (803)
+++++++||||+||||++..++....+.. ...++..+.....-..++. .+ ++..-.. . ....++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~---~----~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV---V----YDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc---c----CCHHhHHHH
Confidence 57899999999999999999887554112 2223333332222122221 11 2211000 0 111244455
Q ss_pred HHhCCCCeEEEEeCCCCC
Q 003681 577 VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 577 La~a~~psLLLLDEP~sG 594 (803)
+....+.++||+|.|+..
T Consensus 294 l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 294 LEQLRDCDVILIDTAGRS 311 (424)
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 566678899999999874
Done!