Query 003681
Match_columns 803
No_of_seqs 390 out of 3221
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 17:42:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003681.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1732-1735//hhsearch_pdb/003681hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 1.0 1 1 417.7 41.7 525 123-694 302-854 (934)
2 1wb9_A DNA mismatch repair pro 1.0 1 1 415.8 38.0 509 124-693 270-798 (800)
3 3thx_B DNA mismatch repair pro 1.0 1 1 404.0 38.9 519 120-694 318-880 (918)
4 1ewq_A DNA mismatch repair pro 1.0 1 1 387.5 42.7 527 92-692 223-763 (765)
5 2o8b_B DNA mismatch repair pro 1.0 1 1 384.5 40.4 305 389-694 661-988 (1022)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 155.1 14.9 163 478-644 5-219 (359)
7 3tui_C Methionine import ATP-b 1.0 1 1 153.3 14.5 165 477-642 24-242 (366)
8 3rlf_A Maltose/maltodextrin im 1.0 1 1 152.9 13.4 162 478-644 4-214 (381)
9 3tif_A Uncharacterized ABC tra 1.0 1 1 151.7 15.1 150 494-644 18-225 (235)
10 4g1u_C Hemin import ATP-bindin 1.0 1 1 150.1 13.5 158 478-640 12-224 (266)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=417.68 Aligned_cols=525 Identities=19% Similarity=0.235 Sum_probs=370.2
Q ss_pred CCHHHHHHHCCCCCCC-----CCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHHHC----------C-C
Q ss_conf 7500222203546899-----5310023158999984179998620699935789-99999998830----------4-6
Q 003681 123 LHLGTATQIGAIPTEG-----IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA-STIQAICKLMS----------K-V 185 (803)
Q Consensus 123 l~~~ta~qlg~~~~~~-----ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~~a-~~i~~~~~~~~----------~-~ 185 (803)
|--.|-.+|-+.++.. -.+|+..+ -.-.++.-.|-||.||++|.--.-. ..=+.++..|. . .
T Consensus 302 lD~~t~~nLEl~~~~~~~~~~~~SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~ 380 (934)
T 3thx_A 302 LDIAAVRALNLFQGSVEDTTGSQSLAALL-NKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDL 380 (934)
T ss_dssp ECHHHHHHTTSCC---------CCHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTT
T ss_pred ECHHHHHHCCCCCCCCCCCCCCCCHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 57888963612645799987777499986-45778799999999974868899999999999999850958999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC---CHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 789860789999997410236999989999999995506921899999613---53466303588968899999999997
Q 003681 186 TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLM---DPTWVATGLKIDFETLVEECRLASVR 262 (803)
Q Consensus 186 ~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~---~~~~~~~g~~~~~~~l~~~c~~~~~~ 262 (803)
-..+|++..+...+..+.++.-.+..+...+. .-+.+.+.+...- .+...+ +-.+.|. .....+..
T Consensus 381 L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~------~~~~l~~~l~~~~~~~~~~l~~----~~~~~l~-~~~~~l~~ 449 (934)
T 3thx_A 381 LRRFPDLNRLAKKFQRQAANLQDCYRLYQGIN------QLPNVIQALEKHEGKHQKLLLA----VFVTPLT-DLRSDFSK 449 (934)
T ss_dssp GGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHT------THHHHHHHHHHTCCSSSTTGGG----GTHHHHH-HHHHHHHH
T ss_pred HCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHHCCCCCCHHHHH----HHHHHHH-HHHHHHHH
T ss_conf 64787899999999628999999999999999------9999999998553311067898----8888999-88765999
Q ss_pred HHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60002256775323468999990378635533113222112238999999999999999973047779886642078899
Q 003681 263 IGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGG 342 (803)
Q Consensus 263 i~~vv~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~ 342 (803)
+.++++..++.+....+.+.|.+.|.+.+.+ +.+.+.++......+...+.+++. .-+.
T Consensus 450 ~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~----------lr~~~~~~~~~l~~~~~~~~~~~~-----------~~~~ 508 (934)
T 3thx_A 450 FQEMIETTLDMDQVENHEFLVKPSFDPNLSE----------LREIMNDLEKKMQSTLISAARDLG-----------LDPG 508 (934)
T ss_dssp HHHHHHTTBCTTGGGTTCCCBCTTSSHHHHH----------HHHHHHHHHHHHHHHHHHHHHHSC-----------CCBT
T ss_pred HHHHHHHHHCCCHHHCCCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHC-----------CCCC
T ss_conf 9999999857231424995138998999999----------999999999999999999999848-----------9856
Q ss_pred CCCCEEEECCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97640101136532520462001312689885445861011026888423066203889999999999999999999999
Q 003681 343 PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLEL 422 (803)
Q Consensus 343 ~~~ei~~~~~~~~~~~r~~r~~~~~~~~~~~~~~i~~lv~~~~~~g~~v~~e~f~t~~l~~~l~r~~~a~~~~~~~~~~i 422 (803)
..-.+.|.... |..+.++..... .++. ...+.....+.+.++|+|+++.++.+++..+..++.+...++
T Consensus 509 ~~lk~~~~~~~------Gy~i~v~~~~~~----~~~~-~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i 577 (934)
T 3thx_A 509 KQIKLDSSAQF------GYYFRVTCKEEK----VLRN-NKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAI 577 (934)
T ss_dssp TTBEEEECC--------CEEEEECHHHHT----TTTT-CSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CEEEEEEECCC------EEEEEEEECHHH----CCCC-CCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52799981640------289999842654----4578-878189971357399989899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCEEEEECCCCCCCCC-CCCCEEEEC
Q ss_conf 9999999999999999999999999999620420256--9913007524766774328991457653235-799442100
Q 003681 423 LRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR--RKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNT 499 (803)
Q Consensus 423 l~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~--~~~~~P~i~~~~~~~~~~i~l~~l~p~~~~~-~~~~~V~nd 499 (803)
+.++...+..+...+......+...|++.++|..+.. .+||+|++++. +...+.+++.+|+++.. .++++|+||
T Consensus 578 ~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~~~~~~v~nd 654 (934)
T 3thx_A 578 VKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQDEIAFIPND 654 (934)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC--CCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC---CCCCEEEECCCCCHHHHCCCCEEECCC
T ss_conf 99999999999999999999999999999999999856689848700027---875407636756124433786065345
Q ss_pred CCC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 489----9579999079998007999898767541127312566455430678953078678823784421787799999
Q 003681 500 VDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 500 v~l----g~i~iITGPNgsGKSTlLk~I~~l~ilAq~G~~VPa~~a~i~~~d~I~~~ig~~d~l~~~~StFs~el~~l~~ 575 (803)
+++ |++++|||||||||||+||+++++.+|+|.|+|+|++.+.++.++.+|++++..|++..+.|+|+.+|.+++.
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~ 734 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHH
T ss_pred CEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 33303797189998889987779999999989987628843442330049999998638165387757666799999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEEE
Q ss_conf 99958999099980899999979899999999999983-59799998268255407532223321045899748942222
Q 003681 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 654 (803)
Q Consensus 576 il~~a~~~sLVLLDEpgsGTD~~eg~aLa~aile~L~e-~g~tvIisTH~~eL~~l~~~~~~i~~~~m~~~~~~~~l~~t 654 (803)
++..+++++|+|+||||+|||+.++.++++++++++.+ .|+++||+||++++..+++....+.+++|.+....+.+.++
T Consensus 735 il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~ 814 (934)
T 3thx_A 735 ILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTML 814 (934)
T ss_dssp HHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEE
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEEEECCCCEEEE
T ss_conf 99846399199996998899999999999999999985679999999273799987320400076699998448827788
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 4775176888179999999399999999999999984334
Q 003681 655 WKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 655 YkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
|++.+|.+++|||+++|+++|+|++||++|++++.++|..
T Consensus 815 y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~ 854 (934)
T 3thx_A 815 YQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEF 854 (934)
T ss_dssp EEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8886688898649999998398999999999999999712
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=415.77 Aligned_cols=509 Identities=21% Similarity=0.242 Sum_probs=364.7
Q ss_pred CHHHHHHHCCCCCC---CCCCCHHHCCCCCCCCCHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCC-------CCCCCCHH
Q ss_conf 50022220354689---9531002315899998417999862069993-5789999999988304-------67898607
Q 003681 124 HLGTATQIGAIPTE---GIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-YEIASTIQAICKLMSK-------VTCSIPEF 192 (803)
Q Consensus 124 ~~~ta~qlg~~~~~---~ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~-~~~a~~i~~~~~~~~~-------~~~~~p~~ 192 (803)
--.|-..|.+..+. .-.+|+ +++-.-.++.-.|.+|.||++|-. .+.-..=|.++..+.. .=..+|++
T Consensus 270 d~~t~~~LEl~~~~~~~~~gSL~-~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dl 348 (800)
T 1wb9_A 270 DAATRRNLEITQNLAGGAENTLA-SVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDL 348 (800)
T ss_dssp CHHHHHHTTSSSCTTSCSTTSHH-HHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSH
T ss_pred CHHHHHHCCCCCCCCCCCCCCHH-HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 68999854685247899646599-98688969799999998725889999999999999999999999778875278658
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHH---HHHHHHHHHHCHHCC
Q ss_conf 89999997410236999989999999995506921899999613534663035889688999---999999976000225
Q 003681 193 TCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE---ECRLASVRIGEMISL 269 (803)
Q Consensus 193 ~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~l~~---~c~~~~~~i~~vv~~ 269 (803)
..+.+.+..+.++-..+..++..+..+. .+...++..-.|.. ..+.+ .+....+.|...+..
T Consensus 349 er~l~r~~~~~~~~~dl~~l~~~l~~~~------~l~~~l~~~~~~~L---------~~l~~~l~~~~~l~~~i~~~i~~ 413 (800)
T 1wb9_A 349 ERILARLALRTARPRDLARMRHAFQQLP------ELRAQLETVDSAPV---------QALREKMGEFAELRDLLERAIID 413 (800)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTTHH------HHHHHHHSCCCHHH---------HHHHHHHCCCHHHHHHHHHHBCS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH------HHHHHHHHCCCHHH---------HHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999999729989999999999999999------99999873686899---------99997360289999999998674
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 67753234689999903786355331132221122389999999999999999730477798866420788999764010
Q 003681 270 DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILY 349 (803)
Q Consensus 270 ~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~~~~~~~~ei~~ 349 (803)
|....+.....|.+.+...+ +.+.+....+...+.+ +..+.+. ..+...-.+.|
T Consensus 414 --~~~~~~~~~~~I~~g~~~eL-----------------d~lr~~~~~~~~~l~~----~~~~~~~---~~~~~~l~i~~ 467 (800)
T 1wb9_A 414 --TPPVLVRDGGVIASGYNEEL-----------------DEWRALADGATDYLER----LEVRERE---RTGLDTLKVGF 467 (800)
T ss_dssp --SCCSCSTTCCCBCTTSCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHH---HHTCTTCEEEE
T ss_pred --CCHHHHHCCCEECCCCCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHH---HHCCCCEEEEE
T ss_conf --75445413884678978899-----------------9999999999999999----9999999---83998147876
Q ss_pred ECCCCCEEEECCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11365325204620013126898854458-61011026888423066203889999999999999999999999999999
Q 003681 350 AREHEAVWFKGKKFRPTVWASTPGEEQIK-QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS 428 (803)
Q Consensus 350 ~~~~~~~~~r~~r~~~~~~~~~~~~~~i~-~lv~~~~~~g~~v~~e~f~t~~l~~~l~r~~~a~~~~~~~~~~il~~L~~ 428 (803)
.+.. .|.+.+..... .+++ +.++..+.+ +.++|+++++.+..+++.++..++.....+++.+|..
T Consensus 468 ~~~~--------gy~i~V~~~~~--~~vp~~~i~~~s~~----~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~ 533 (800)
T 1wb9_A 468 NAVH--------GYYIQISRGQS--HLAPINYMRRQTLK----NAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFD 533 (800)
T ss_dssp ETTT--------EEEEEEEHHHH--TTSCTTCEEEEECS----SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--------EEEEEEECCCC--CCCCCCEEEEEECC----CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4731--------39999843200--13885127864026----8878847899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCC---CC
Q ss_conf 99999999999999999999996204202569913007524766774328991457653235-799442100489---95
Q 003681 429 ELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QS 504 (803)
Q Consensus 429 ~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~~~~~i~l~~l~p~~~~~-~~~~~V~ndv~l---g~ 504 (803)
.+..+.+.+......+...|++++++..+...+||+|++++. ..+.+++.+|+..+. .++++++||+++ |+
T Consensus 534 ~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~ 608 (800)
T 1wb9_A 534 LLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDK-----PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRR 608 (800)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSS-----SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC-----CCEEEEECCCCEEECCCCCCEEEECCCCCCCCC
T ss_conf 998889999999999999999999999998689836477799-----878999541637872479836510231267885
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 79999079998007999898767541127312566455430678953078678823784421787799999999589990
Q 003681 505 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 584 (803)
Q Consensus 505 i~iITGPNgsGKSTlLk~I~~l~ilAq~G~~VPa~~a~i~~~d~I~~~ig~~d~l~~~~StFs~el~~l~~il~~a~~~s 584 (803)
+++|||||||||||+||+++++.+++|.|++||+..+.++.++++|++++..|++..+.|+|+.+|.++..++..+++++
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~ps 688 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYS 688 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999987689999999889887518642132045421999876588788887426555688999999998456997
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCC
Q ss_conf 99980899999979899999999999983-59799998268255407532223321045899748942222477517688
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 663 (803)
Q Consensus 585 LVLLDEpgsGTD~~eg~aLa~aile~L~e-~g~tvIisTH~~eL~~l~~~~~~i~~~~m~~~~~~~~l~~tYkL~~G~~~ 663 (803)
|+|+||||+|||+.++.++++++++++.+ .++++||+||++++..+++...++.+++|.++..++.+.|+|++.+|.++
T Consensus 689 LlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~ 768 (800)
T 1wb9_A 689 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAAS 768 (800)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 89997998789866799999999999986239868998378899987443202377899999728917898799878999
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 817999999939999999999999998433
Q 003681 664 ESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 664 ~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~ 693 (803)
+|||+++|+++|+|++||+||++++.++|.
T Consensus 769 ~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 769 KSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp SCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 858999999819899999999999998761
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=403.95 Aligned_cols=519 Identities=18% Similarity=0.221 Sum_probs=354.8
Q ss_pred CCCCCHHHHHHHCCCCCCC----CCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHHH-----------C
Q ss_conf 9777500222203546899----5310023158999984179998620699935789-9999999883-----------0
Q 003681 120 PRPLHLGTATQIGAIPTEG----IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA-STIQAICKLM-----------S 183 (803)
Q Consensus 120 p~pl~~~ta~qlg~~~~~~----ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~~a-~~i~~~~~~~-----------~ 183 (803)
---|--.|-.+|-+..+-. -.+|+..+ -.-.++.-.|-||+||++|---.-. ..=|.++..| .
T Consensus 318 ~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~L-d~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~ 396 (918)
T 3thx_B 318 FMTINGTTLRNLEILQNQTDMKTKGSLLWVL-DHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIE 396 (918)
T ss_dssp BCEECHHHHHHTTSSSCTTTCSSTTSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred EEEECHHHHHHCCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7998789997437763689998887699998-427796899999998758278999999999999999847957899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCC-HHHHHHHHHHH---
Q ss_conf 46789860789999997410236999989999999995506921899999613534663035889-68899999999---
Q 003681 184 KVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKID-FETLVEECRLA--- 259 (803)
Q Consensus 184 ~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~l~~~c~~~--- 259 (803)
..-..+|+++.+...+..+.++--.|..+...+..+.. .+..++.. +....... ...+...+...
T Consensus 397 ~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~-----~l~~~l~~------~~~~~~~~lL~~~~~~~~~~~~~ 465 (918)
T 3thx_B 397 NHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKS-----EFQAIIPA------VNSHIQSDLLRTVILEIPELLSP 465 (918)
T ss_dssp HTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHTCCCHHHHHHHTHHHHHTGG
T ss_pred HHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 98726865778888760376888999999999999999-----99999887------65202578999999755566789
Q ss_pred HHHHHCHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99760002256775323468-99999037863553311322211223899999999999999997304777988664207
Q 003681 260 SVRIGEMISLDGESDQKICS-YDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTA 338 (803)
Q Consensus 260 ~~~i~~vv~~~~~~~~~~~~-~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~~d~~~~l~~~~~~~~ 338 (803)
...+.+++... ...... ...+.. ..+ ...+....+....+...+.+ .+.+.+..++
T Consensus 466 ~~~~~~~i~~~---~~~~~~~~~~~~~-~~~---------------~~~l~~~~~~~~~~~~~~~~----~l~~~~~~i~ 522 (918)
T 3thx_B 466 VEHYLKILNEQ---AAKVGDKTELFKD-LSD---------------FPLIKKRKDEIQGVIDEIRM----HLQEIRKILK 522 (918)
T ss_dssp GHHHHTTSCHH---HHHHTCSTTSCSC-GGG---------------CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT
T ss_pred HHHHHHHHHHH---HHHCCCCCCCCCC-CCC---------------CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC
T ss_conf 99999998776---6442774200024-322---------------77799999999999999999----9999998747
Q ss_pred CCCCCCCCEEEECCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999764010113653252046200131268988544586101102688842306620388999999999999999999
Q 003681 339 PLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 418 (803)
Q Consensus 339 ~~~~~~~ei~~~~~~~~~~~r~~r~~~~~~~~~~~~~~i~~lv~~~~~~g~~v~~e~f~t~~l~~~l~r~~~a~~~~~~~ 418 (803)
. .+ +.| ...++.+|.+.+..... ..+++..+..+..+ +.++|+++++.+..+++..+.++....
T Consensus 523 ~---~~--~~~------~~~~g~~y~iev~~~~~--~~vp~~~~~~~~~~---~~~rf~tpel~~~~~~~~~~~e~~~~~ 586 (918)
T 3thx_B 523 N---PS--AQY------VTVSGQEFMIEIKNSAV--SCIPTDWVKVGSTK---AVSRFHSPFIVENYRHLNQLREQLVLD 586 (918)
T ss_dssp C---TT--CCC------EEETTEEEEEEEETTSG--GGSCSSCEEEEECS---SEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CC--CEE------EEECCCEEEEEECHHHH--HHCCCEEEEEEECC---CEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 5---66--436------85128789999737877--01998489998347---725997789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCC---CCCCCE
Q ss_conf 99999999999999999999999999999999620420256991300752476677432899145765323---579944
Q 003681 419 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSA 495 (803)
Q Consensus 419 ~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~~~~~i~l~~l~p~~~~---~~~~~~ 495 (803)
..+.+.++...+..+...+......+...|+++|+|..+...+||+|++++. ..+.+++.+|+.++ ..++++
T Consensus 587 e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~~~ 661 (918)
T 3thx_B 587 CSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEE-----RKIVIKNGRHPVIDVLLGEQDQY 661 (918)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESS-----CEEEEEEECCHHHHHHTCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCEEEEECCCHHHHHHHCCCCCE
T ss_conf 9999999999999889999999999999999999999973489747754688-----84799725652122231368956
Q ss_pred EEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 2100489----957999907999800799989876754112731256645543067895307867882378442178779
Q 003681 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 571 (803)
Q Consensus 496 V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~ilAq~G~~VPa~~a~i~~~d~I~~~ig~~d~l~~~~StFs~el~ 571 (803)
|+||+++ |++++|||||||||||+||+++++.+|+|.|+++|+..+.++.++.+|++++..|++..+.|+|+.+|+
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~ 741 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELT 741 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHH
T ss_pred ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 61566234788708999899987658999999887888624763452111225999999867858899986877658999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCC-CCCCEEEEEEE--
Q ss_conf 999999958999099980899999979899999999999983-59799998268255407532223-32104589974--
Q 003681 572 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKN-AAYKAMGTEYL-- 647 (803)
Q Consensus 572 ~l~~il~~a~~~sLVLLDEpgsGTD~~eg~aLa~aile~L~e-~g~tvIisTH~~eL~~l~~~~~~-i~~~~m~~~~~-- 647 (803)
++..++..+++|+|+|||||++|||+.++.++++++++++.+ .|+++||+||++++..+++..+. +.++||.+...
T Consensus 742 ~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~ 821 (918)
T 3thx_B 742 DTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSED 821 (918)
T ss_dssp HHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC--
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 99999986669978999689889998999999999999999824986999947689999986251446789999997156
Q ss_pred ------------CCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ------------89422224775176888179999999399999999999999984334
Q 003681 648 ------------DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 648 ------------~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
.+.+.|+|++.+|.+++|||+++|+++|+|++||+||++++.++|..
T Consensus 822 ~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 822 ESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp ---------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 43334443457888345863562289987489999998296999999999999999999
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=387.54 Aligned_cols=527 Identities=21% Similarity=0.248 Sum_probs=366.6
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC-CCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 9999998861999653158986259998977750022220354689-953100231589999841799986206999357
Q 003681 92 ELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTE-GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE 170 (803)
Q Consensus 92 ~ll~~v~~~~~~~~~~~f~~~~~~~~~rp~pl~~~ta~qlg~~~~~-~ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~ 170 (803)
.||.-+++.-.- ... ...+..-....---+--.|-..|.+..+. | -.-|-+++-.-.++.-.|.+|.||++|.--.
T Consensus 223 ~ll~Yl~~~~~~-~~~-~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~-~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~ 299 (765)
T 1ewq_A 223 ALLAYAQRTQGG-ALS-LQPFRFYDPGAFMRLPEATLRALEVFEPLRG-QDTLFSVLDETRTAPGRRLLQSWLRHPLLDR 299 (765)
T ss_dssp HHHHHHHHHHTS-CCC-CCCCEECCGGGSCBCCHHHHHHTTSSSCSSS-CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHC-CCC-CCCCEEECCCCEEEECHHHHHHCCCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 999999996022-125-5786897778869966899973758547896-1169998688879799999999765747899
Q ss_pred H-H----HHHHHHHH------HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
Q ss_conf 8-9----99999998------83046789860789999997410236999989999999995506921899999613534
Q 003681 171 I-A----STIQAICK------LMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPT 239 (803)
Q Consensus 171 ~-a----~~i~~~~~------~~~~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 239 (803)
- - +++++... -+...=..+|++..+...+..+.++-..+..++..+..+.. +...+.
T Consensus 300 ~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~------l~~~l~------ 367 (765)
T 1ewq_A 300 GPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPE------LRALLG------ 367 (765)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH------HHHHHC------
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH------HHHHHH------
T ss_conf 99999999999997398999988998735778899999997289988999999999999999------999998------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66303588968899999999997600022567753234689999903786355331132221122389999999999999
Q 003681 240 WVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALS 319 (803)
Q Consensus 240 ~~~~g~~~~~~~l~~~c~~~~~~i~~vv~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~ 319 (803)
+...+ + .+....+.|...+.. +..........|.+.+...+ +.+.+......
T Consensus 368 -l~~~l--~------~~~~l~~~i~~~i~~--~~~~~~~~~~~i~~g~~~~L-----------------d~lr~~~~~~~ 419 (765)
T 1ewq_A 368 -EEVGL--P------DLSPLKEELEAALVE--DPPLKVSEGGLIREGYDPDL-----------------DALRAAHREGV 419 (765)
T ss_dssp -TTSCC--C------CCHHHHHHHHHHBCS--SCCSCTTSSCCBCTTSCHHH-----------------HHHHHHHHHHH
T ss_pred -HHHCC--C------CHHHHHHHHHHHHCC--CCHHHHCCCCCCCCCCCHHH-----------------HHHHHHHHHHH
T ss_conf -77516--5------379999999998634--64344204775378878999-----------------99999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEC
Q ss_conf 999730477798866420788999764010113653252046200131268988544586-1011026888423066203
Q 003681 320 LAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFST 398 (803)
Q Consensus 320 ~ai~~d~~~~l~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~r~~~~~~~~~~~~~~i~~-lv~~~~~~g~~v~~e~f~t 398 (803)
..+.+- ..+.+.. .+...-.+.|.+... |.+.+..... .++++ .++..+. .+.++|++
T Consensus 420 ~~l~~~----~~~~~~~---~~~~~l~i~~~~~~g--------y~i~v~~~~~--~~vp~~~i~~~s~----~~~~rf~t 478 (765)
T 1ewq_A 420 AYFLEL----EERERER---TGIPTLKVGYNAVFG--------YYLEVTRPYY--ERVPKEYRPVQTL----KDRQRYTL 478 (765)
T ss_dssp HHHHHH----HHHHHHH---HCCTTCEEEEETTTE--------EEEEEEGGGG--GGSCTTCEEEEEC----SSEEEEEC
T ss_pred HHHHHH----HHHHHHH---CCCCCEEEEECCCEE--------EEEEEEHHHH--HCCCCCEEEEEEC----CCCCEEEC
T ss_conf 999999----9999997---299955898626415--------9999646765--0398635998722----68757877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEE
Q ss_conf 88999999999999999999999999999999999999999999999999996204202569913007524766774328
Q 003681 399 LKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCL 478 (803)
Q Consensus 399 ~~l~~~l~r~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~~~~~i 478 (803)
+++.+..+++.++..++.....+++.+|...+..+...+......+...|++++++..+...+||+|++ + ..+
T Consensus 479 p~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~------~~i 551 (765)
T 1ewq_A 479 PEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-G------DRL 551 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-S------SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC-C------CCE
T ss_conf 899999999999999999999999999999999989999999999999999995499998679334135-7------738
Q ss_pred EEECCCCCCCCCCCCCEEEECCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 991457653235799442100489-9579999079998007999898767541127312566455430678953078678
Q 003681 479 KMNGLSPYWFDAAEGSAVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 557 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~V~ndv~l-g~i~iITGPNgsGKSTlLk~I~~l~ilAq~G~~VPa~~a~i~~~d~I~~~ig~~d 557 (803)
.+++.+|+.++. ++++++||+++ |++++|||||||||||+||+++++..+++.|+++|+..+.++.++++|.+++..|
T Consensus 552 ~i~~~rHP~le~-~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d 630 (765)
T 1ewq_A 552 QIRAGRHPVVER-RTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASD 630 (765)
T ss_dssp EEEEECCTTGGG-TSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC--
T ss_pred EEEEEECCEECC-CCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHHCCCCHHH
T ss_conf 999727863706-8845751105778689999999987689999998656531168553044051343777653197899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCC
Q ss_conf 82378442178779999999958999099980899999979899999999999983597999982682554075322233
Q 003681 558 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 637 (803)
Q Consensus 558 ~l~~~~StFs~el~~l~~il~~a~~~sLVLLDEpgsGTD~~eg~aLa~aile~L~e~g~tvIisTH~~eL~~l~~~~~~i 637 (803)
++..+.|+|+.+|.++..++..+++|+|+|+||||+||++.|+.++++++++++.+.+++++++||++++..++ .+++
T Consensus 631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~--~~~v 708 (765)
T 1ewq_A 631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG--LPRL 708 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC--CTTE
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHCC
T ss_conf 98742367789999999999856689789998899888876899999999999996899899992788999765--4160
Q ss_pred CCCEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 2104589974894222247751768881799999993999999999999999843
Q 003681 638 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 692 (803)
Q Consensus 638 ~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~ 692 (803)
.+.+|.++..++.+.|+|++.+|.+++|||+++|+++|+|++||++|++++.++|
T Consensus 709 ~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 709 KNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp EEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 5899999970890789878977899996699999982989999999999999874
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=384.46 Aligned_cols=305 Identities=25% Similarity=0.328 Sum_probs=258.0
Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEE
Q ss_conf 8423066203889999999999999999999999999999999999999999999999999962042025--69913007
Q 003681 389 RKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPA 466 (803)
Q Consensus 389 ~~v~~e~f~t~~l~~~l~r~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~--~~~~~~P~ 466 (803)
.+.+.++|+|+++++...++..+.++......++..++...+..+...+..+...+...|++++++..+. ..+||+|+
T Consensus 661 t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~ 740 (1022)
T 2o8b_B 661 TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPV 740 (1022)
T ss_dssp ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCE
T ss_pred ECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 13685079615788999999999999999999999999999999999999999999999999957999864367851775
Q ss_pred EECCCCCCCCEEEEECCCCCCCCC--CCCCEEEECCCC-----------CCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 524766774328991457653235--799442100489-----------9579999079998007999898767541127
Q 003681 467 LKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDM-----------QSLFLLTGPNGGGKSSLLRSICAASLLGICG 533 (803)
Q Consensus 467 i~~~~~~~~~~i~l~~l~p~~~~~--~~~~~V~ndv~l-----------g~i~iITGPNgsGKSTlLk~I~~l~ilAq~G 533 (803)
+++. .+....+.+++.+|+.+.. .++.+|+||++| |++++|||||||||||+||++|++.+|+|+|
T Consensus 741 ~~~~-~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG 819 (1022)
T 2o8b_B 741 ILLP-EDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMG 819 (1022)
T ss_dssp ECCT-TTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CCCC-CCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEE
T ss_conf 4567-799863999926255799995589557544553355444557788489998899998689999998899986626
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 31256645543067895307867882378442178779999999958999099980899999979899999999999983
Q 003681 534 LMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 534 ~~VPa~~a~i~~~d~I~~~ig~~d~l~~~~StFs~el~~l~~il~~a~~~sLVLLDEpgsGTD~~eg~aLa~aile~L~e 613 (803)
+|||++.+.++++++|+++++..|++..+.|+|+.+|.+++.+++.+++++|||+||||+|||+.+|.++++++++++.+
T Consensus 820 ~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 820 CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp CCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88526767797999999976977888615433289999999999748899689997998889867899999999999986
Q ss_pred C-CCEEEEECCCHHHHHCCCCCCCCCCCEEEEEE-------ECCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5-97999982682554075322233210458997-------489422224775176888179999999399999999999
Q 003681 614 I-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY-------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 685 (803)
Q Consensus 614 ~-g~tvIisTH~~eL~~l~~~~~~i~~~~m~~~~-------~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~ 685 (803)
. ++++||+||+++++........+.+++|.+.. .++.+.++|++.+|.+++|||+++|+++|+|++||++|+
T Consensus 900 ~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~ 979 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGH 979 (1022)
T ss_dssp TSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 47998999969899999857854315276999970572337877358885324799998799999998097999999999
Q ss_pred HHHHHHCCC
Q ss_conf 999984334
Q 003681 686 DLYIACGVN 694 (803)
Q Consensus 686 ~l~~~~~~~ 694 (803)
+++.++|..
T Consensus 980 ~~~~~le~~ 988 (1022)
T 2o8b_B 980 RKAREFEKM 988 (1022)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHHHH
T ss_conf 999999978
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=155.09 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=113.4
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHHH----------------------HH
Q ss_conf 8991457653235799442100489----957999907999800799989876754----------------------11
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GI 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~il----------------------Aq 531 (803)
+.++++...+ ++..+++|++| |++++|+|||||||||+||+|+++... .+
T Consensus 5 l~i~~ls~~y----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHC
T ss_conf 9999699998----998889753899959989999999980599999999669989973899999997545566554108
Q ss_pred CCCCCCCCCCCCC---CHHHH---------------------HHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCCEEE
Q ss_conf 2731256645543---06789---------------------53078678823784421787799999-99958999099
Q 003681 532 CGLMVPAESASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 532 ~G~~VPa~~a~i~---~~d~I---------------------~~~ig~~d~l~~~~StFs~el~~l~~-il~~a~~~sLV 586 (803)
.-.+|++..+.++ ..+++ +..++..+......+++|.+++|... +.+.+.+|+++
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88999078757899999999999998769986899999999998869903755892457999999999999997399999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HCCCCCCCCCCCEEEE
Q ss_conf 980899999979899999999999983597999982682554-0753222332104589
Q 003681 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 587 LLDEpgsGTD~~eg~aLa~aile~L~e~g~tvIisTH~~eL~-~l~~~~~~i~~~~m~~ 644 (803)
|+|||++|+|+.....+...+.+...+.|.++|++||+.+.+ .++++...+..+.+..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99697436799999999999999998579989999499999998799999998998999
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=153.34 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=115.5
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHH-----------------------H
Q ss_conf 28991457653235799442100489----95799990799980079998987675-----------------------4
Q 003681 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------------L 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~i-----------------------l 529 (803)
-+.++++...+.....+..+++|++| |++++|+|||||||||++|+++++.. .
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHH
T ss_conf 59998489993898877378874699984898999995899559999999966999996299999999875898799987
Q ss_pred HHCCCCCCCCCCCCC---CHHH---------------------HHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCE
Q ss_conf 112731256645543---0678---------------------953078678823784421787799999999-589990
Q 003681 530 GICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSRS 584 (803)
Q Consensus 530 Aq~G~~VPa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~StFs~el~~l~~il~-~a~~~s 584 (803)
.+.-.|||+....++ ..++ ++..++..+......+++|.++++...|.. .+.+|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 38689992787568888999999999986599878999999999997699347619945589999999999999966999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHH-HCCCCCCCCCCCEE
Q ss_conf 999808999999798999999999999-83597999982682554-07532223321045
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 585 LVLLDEpgsGTD~~eg~aLa~aile~L-~e~g~tvIisTH~~eL~-~l~~~~~~i~~~~m 642 (803)
++|+|||++|+|+.....+. .+++.+ .+.|.++|++||+.+.. .++++...+..+.+
T Consensus 184 lLLlDEPTs~LD~~~~~~i~-~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHH-HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 99997987568999999999-999999973799999995689999996999999989989
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=152.91 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=113.4
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHHH------------------HHCCCC
Q ss_conf 8991457653235799442100489----957999907999800799989876754------------------112731
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~il------------------Aq~G~~ 535 (803)
+.++++...+ ++..+++|++| |++++|+|||||||||+||+|+++... ...-.+
T Consensus 4 l~~~~l~~~y----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEE
T ss_conf 9998489998----999999656899879989999968995599999999769988971999999999879977888899
Q ss_pred CCCCCCCCC---CHHH---------------------HHHHCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEEEC
Q ss_conf 256645543---0678---------------------95307867882378442178779999999-9589990999808
Q 003681 536 VPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDE 590 (803)
Q Consensus 536 VPa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~StFs~el~~l~~il-~~a~~~sLVLLDE 590 (803)
|+++.+.++ ..++ ++..++..+......+.+|.+++|...+. +.+.+|+++|+||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 90687578999999999999977599989999999999988599416539925799999999999999981999999989
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHH-HCCCCCCCCCCCEEEE
Q ss_conf 999999798999999999999-83597999982682554-0753222332104589
Q 003681 591 ICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 591 pgsGTD~~eg~aLa~aile~L-~e~g~tvIisTH~~eL~-~l~~~~~~i~~~~m~~ 644 (803)
|++++|+.....+. .+++.+ .+.|.++|++||+.+.+ .++++...+..+.+..
T Consensus 160 Pts~LD~~~~~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 160 PLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp TTTTSCHHHHHHHH-HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 87679999999999-99999998679889999889999998699999998998999
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=1.00 E-value=1 Score=151.70 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=104.8
Q ss_pred CEEEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHHH------------------------HHCCCCCCCCCCCC--
Q ss_conf 442100489----957999907999800799989876754------------------------11273125664554--
Q 003681 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI-- 543 (803)
Q Consensus 494 ~~V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~il------------------------Aq~G~~VPa~~a~i-- 543 (803)
..++++++| |++++|+|||||||||++|+++++... .+.-.|+|+....+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 04687436898699899999999984999999995599999659999999845289889999863569999568756889
Q ss_pred -CCHHHH------------------------HHHCCCCCCC-CCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCCCCC
Q ss_conf -306789------------------------5307867882-3784421787799999-999589990999808999999
Q 003681 544 -PYFDAI------------------------MLHMKSYDSP-ADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 544 -~~~d~I------------------------~~~ig~~d~l-~~~~StFs~el~~l~~-il~~a~~~sLVLLDEpgsGTD 596 (803)
...+++ +..++..+.. ....+++|.++++... +.+.+.+|+++|+|||++|+|
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 86999999798764115788799999999999977997456509944589999999999999972999999948866699
Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHCCCCCCCCCCCEEEE
Q ss_conf 7989999999999998-35979999826825540753222332104589
Q 003681 597 TAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 597 ~~eg~aLa~aile~L~-e~g~tvIisTH~~eL~~l~~~~~~i~~~~m~~ 644 (803)
+.....+. .++..+. +.|.++|++||+.++..++++...+..+.+..
T Consensus 178 ~~~~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 178 SKTGEKIM-QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEEE
T ss_conf 89999999-9999999976999999918888997489899998998998
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=150.06 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=108.4
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCC----CCEEEEECCCCCCCHHHHHHHHHHHH--------------------HHHCC
Q ss_conf 8991457653235799442100489----95799990799980079998987675--------------------41127
Q 003681 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~V~ndv~l----g~i~iITGPNgsGKSTlLk~I~~l~i--------------------lAq~G 533 (803)
+.++++...+ +++.++++++| |++++|+|||||||||++|+++++.. ..+..
T Consensus 12 l~~~~l~~~~----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 12 LEASHLHYHV----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHEE
T ss_conf 9998699995----995678765899869989999999998599999999669988873899999997759989985308
Q ss_pred CCCCCCCCC---CCCHH-------------------HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-HCC------CCE
Q ss_conf 312566455---43067-------------------8953078678823784421787799999999-589------990
Q 003681 534 LMVPAESAS---IPYFD-------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATT------SRS 584 (803)
Q Consensus 534 ~~VPa~~a~---i~~~d-------------------~I~~~ig~~d~l~~~~StFs~el~~l~~il~-~a~------~~s 584 (803)
.++++.... +...+ .++..++..+......+++|.++++...+.. .+. +|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99923775678979999998554206857799999999987598557559924078999999999999966445688999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHH-CCCCCCCCCCC
Q ss_conf 9998089999997989999999999998-35979999826825540-75322233210
Q 003681 585 LVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 585 LVLLDEpgsGTD~~eg~aLa~aile~L~-e~g~tvIisTH~~eL~~-l~~~~~~i~~~ 640 (803)
++|+|||++|+|+.....+. .+++.+. +.+.++|++||+.++.. ++++...+..+
T Consensus 168 lLllDEPts~LD~~~~~~i~-~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTL-RLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQG 224 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHH-HHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 99983964469999999999-9999999738989999976989999868999999899
Done!