Query 003683
Match_columns 803
No_of_seqs 577 out of 5312
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.5E-68 1.8E-72 649.3 48.6 643 1-774 423-1101(1153)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-39 5.7E-44 398.2 30.7 491 83-580 39-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.6E-37 5.6E-42 380.5 28.0 446 110-559 92-589 (968)
4 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-32 5.3E-37 318.5 7.0 373 2-409 399-803 (889)
5 KOG0444 Cytoskeletal regulator 100.0 4.3E-32 9.2E-37 284.8 -4.1 353 174-559 23-380 (1255)
6 KOG4194 Membrane glycoprotein 100.0 1.3E-29 2.9E-34 265.0 11.2 361 161-552 53-427 (873)
7 KOG4194 Membrane glycoprotein 100.0 1.5E-29 3.3E-34 264.5 6.2 381 141-549 54-447 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 4.2E-31 9E-36 265.0 -11.1 400 141-582 47-537 (565)
9 KOG0444 Cytoskeletal regulator 99.9 1.3E-29 2.7E-34 266.4 -4.6 357 139-534 7-378 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 9.6E-29 2.1E-33 248.1 -11.2 407 112-553 69-540 (565)
11 KOG0618 Serine/threonine phosp 99.9 1.3E-27 2.8E-32 263.4 -4.1 413 131-569 37-459 (1081)
12 PLN03210 Resistant to P. syrin 99.9 1.9E-23 4.2E-28 257.7 27.3 336 180-580 556-911 (1153)
13 KOG0618 Serine/threonine phosp 99.9 2E-24 4.4E-29 238.4 -4.3 397 113-549 47-508 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.4E-16 3.1E-21 182.8 18.6 255 140-458 202-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 1E-16 2.2E-21 184.1 17.3 239 139-415 222-460 (788)
16 KOG4237 Extracellular matrix p 99.7 2.9E-19 6.3E-24 180.2 -5.1 265 166-436 52-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.7 7.6E-17 1.6E-21 186.4 12.5 73 161-238 179-251 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 181.8 11.8 247 139-437 178-428 (754)
19 KOG4237 Extracellular matrix p 99.6 3.5E-16 7.5E-21 158.2 0.4 382 148-551 55-498 (498)
20 cd00116 LRR_RI Leucine-rich re 99.6 2.2E-16 4.7E-21 169.6 -2.4 259 277-552 18-318 (319)
21 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 137.3 -2.9 165 353-571 33-199 (264)
22 KOG0617 Ras suppressor protein 99.5 1.7E-15 3.6E-20 136.0 -3.4 169 174-374 25-194 (264)
23 cd00116 LRR_RI Leucine-rich re 99.4 6.6E-15 1.4E-19 158.1 -1.7 271 165-457 3-317 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1.3E-12 2.7E-17 153.9 8.7 85 256-340 569-653 (889)
25 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 120.6 1.3 210 299-552 115-337 (505)
26 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 119.1 7.4 196 333-557 97-293 (394)
27 KOG3207 Beta-tubulin folding c 98.9 2.8E-10 6.1E-15 117.6 -0.3 214 277-531 116-339 (505)
28 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.4E-14 118.3 7.1 181 180-394 114-295 (394)
29 KOG0532 Leucine-rich repeat (L 98.9 5E-11 1.1E-15 126.7 -6.2 191 331-551 77-270 (722)
30 KOG1259 Nischarin, modulator o 98.9 7.6E-10 1.7E-14 108.6 2.5 129 396-552 280-410 (490)
31 KOG1909 Ran GTPase-activating 98.9 2.9E-10 6.3E-15 114.5 -0.6 234 280-552 28-309 (382)
32 KOG1259 Nischarin, modulator o 98.9 7.3E-10 1.6E-14 108.8 1.6 133 353-535 284-416 (490)
33 KOG1909 Ran GTPase-activating 98.8 4.6E-10 9.9E-15 113.1 -0.2 187 201-388 88-310 (382)
34 PF14580 LRR_9: Leucine-rich r 98.8 1.3E-08 2.9E-13 96.5 6.7 55 161-216 20-75 (175)
35 KOG0532 Leucine-rich repeat (L 98.7 1.5E-09 3.3E-14 115.7 -0.7 189 354-572 76-270 (722)
36 PF14580 LRR_9: Leucine-rich r 98.7 6.4E-09 1.4E-13 98.7 2.5 134 173-314 10-149 (175)
37 KOG4341 F-box protein containi 98.4 1.1E-08 2.3E-13 105.6 -5.4 229 206-459 139-384 (483)
38 PRK15386 type III secretion pr 98.4 1.2E-06 2.6E-11 93.2 9.7 61 352-417 51-111 (426)
39 PLN03150 hypothetical protein; 98.4 6.5E-07 1.4E-11 104.0 8.4 112 426-560 420-534 (623)
40 KOG0531 Protein phosphatase 1, 98.3 9.2E-08 2E-12 106.1 0.0 192 161-389 73-268 (414)
41 KOG2120 SCF ubiquitin ligase, 98.3 6E-09 1.3E-13 102.5 -8.2 105 354-458 186-297 (419)
42 PLN03150 hypothetical protein; 98.3 1.2E-06 2.5E-11 101.8 7.6 108 330-437 419-528 (623)
43 KOG0531 Protein phosphatase 1, 98.2 3.3E-07 7.2E-12 101.6 0.6 127 136-270 69-198 (414)
44 PRK15386 type III secretion pr 98.2 7.7E-06 1.7E-10 87.2 9.6 160 372-575 48-213 (426)
45 KOG2982 Uncharacterized conser 98.1 7.8E-07 1.7E-11 87.9 1.5 232 328-581 44-287 (418)
46 PF13855 LRR_8: Leucine rich r 98.1 3.7E-06 8E-11 65.3 4.6 55 161-215 2-59 (61)
47 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 93.0 -5.6 152 260-411 187-349 (419)
48 PF13855 LRR_8: Leucine rich r 98.0 4.4E-06 9.6E-11 64.9 3.7 58 353-410 1-59 (61)
49 KOG4341 F-box protein containi 98.0 1.3E-07 2.7E-12 97.8 -7.1 134 328-461 293-440 (483)
50 KOG2982 Uncharacterized conser 98.0 2.3E-06 4.9E-11 84.8 1.1 203 162-389 47-262 (418)
51 KOG1859 Leucine-rich repeat pr 98.0 8.9E-08 1.9E-12 105.0 -9.6 100 354-458 165-265 (1096)
52 COG5238 RNA1 Ran GTPase-activa 97.8 4.7E-06 1E-10 81.5 -0.0 221 89-342 8-255 (388)
53 KOG1859 Leucine-rich repeat pr 97.7 7.5E-07 1.6E-11 97.9 -7.2 110 416-552 179-290 (1096)
54 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5E-10 55.8 2.2 34 519-552 2-35 (44)
55 PF12799 LRR_4: Leucine Rich r 97.4 0.00017 3.7E-09 51.3 3.6 36 182-217 1-36 (44)
56 KOG1644 U2-associated snRNP A' 97.4 0.00031 6.8E-09 66.3 6.2 107 181-293 41-151 (233)
57 KOG3665 ZYG-1-like serine/thre 97.4 3.7E-05 8E-10 89.2 0.1 148 160-313 122-283 (699)
58 KOG3665 ZYG-1-like serine/thre 97.3 9E-05 2E-09 86.0 2.1 133 398-552 146-286 (699)
59 KOG4579 Leucine-rich repeat (L 97.2 2.2E-05 4.8E-10 69.1 -3.7 86 161-247 54-141 (177)
60 KOG1644 U2-associated snRNP A' 97.2 0.00075 1.6E-08 63.8 5.8 105 184-295 21-126 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.1 0.00018 3.9E-09 70.7 1.3 181 257-437 29-255 (388)
62 KOG4579 Leucine-rich repeat (L 97.0 2.8E-05 6.1E-10 68.4 -4.9 87 161-248 28-119 (177)
63 KOG1947 Leucine rich repeat pr 96.8 0.00015 3.3E-09 82.5 -2.3 110 304-413 187-308 (482)
64 KOG1947 Leucine rich repeat pr 96.7 0.00021 4.6E-09 81.3 -2.7 34 204-237 187-223 (482)
65 KOG2739 Leucine-rich acidic nu 96.1 0.0033 7.1E-08 62.2 2.4 62 489-552 61-127 (260)
66 KOG2739 Leucine-rich acidic nu 95.7 0.011 2.3E-07 58.6 4.0 85 374-458 63-154 (260)
67 KOG2123 Uncharacterized conser 95.1 0.0021 4.6E-08 63.6 -3.0 99 304-406 18-123 (388)
68 KOG2123 Uncharacterized conser 95.0 0.0011 2.3E-08 65.7 -5.4 86 183-275 20-105 (388)
69 PF00560 LRR_1: Leucine Rich R 94.3 0.026 5.7E-07 33.3 1.5 21 183-203 1-21 (22)
70 PF00560 LRR_1: Leucine Rich R 94.3 0.016 3.5E-07 34.2 0.5 20 519-538 1-20 (22)
71 PF13306 LRR_5: Leucine rich r 93.7 0.2 4.4E-06 45.1 7.0 102 326-433 9-112 (129)
72 PF13306 LRR_5: Leucine rich r 93.2 0.41 8.8E-06 43.1 8.1 104 130-237 3-112 (129)
73 PF13504 LRR_7: Leucine rich r 92.9 0.065 1.4E-06 29.3 1.4 16 519-534 2-17 (17)
74 PF07725 LRR_3: Leucine Rich R 90.3 0.24 5.2E-06 28.3 1.8 20 183-202 1-20 (20)
75 PF13504 LRR_7: Leucine rich r 88.9 0.26 5.7E-06 27.0 1.3 11 162-172 3-13 (17)
76 KOG4308 LRR-containing protein 88.7 0.0036 7.7E-08 69.8 -12.2 64 491-554 230-303 (478)
77 smart00369 LRR_TYP Leucine-ric 87.5 0.53 1.2E-05 28.9 2.3 21 517-537 1-21 (26)
78 smart00370 LRR Leucine-rich re 87.5 0.53 1.2E-05 28.9 2.3 21 517-537 1-21 (26)
79 KOG4308 LRR-containing protein 87.3 0.0051 1.1E-07 68.6 -12.1 112 422-551 202-328 (478)
80 KOG3864 Uncharacterized conser 85.7 0.16 3.5E-06 48.6 -1.2 68 485-552 117-187 (221)
81 KOG0473 Leucine-rich repeat pr 83.9 0.049 1.1E-06 52.9 -5.6 83 134-216 37-122 (326)
82 KOG3864 Uncharacterized conser 81.4 0.61 1.3E-05 44.8 0.7 83 180-267 99-185 (221)
83 smart00370 LRR Leucine-rich re 80.9 1.4 3.1E-05 27.0 2.1 22 423-444 1-22 (26)
84 smart00369 LRR_TYP Leucine-ric 80.9 1.4 3.1E-05 27.0 2.1 22 423-444 1-22 (26)
85 KOG0473 Leucine-rich repeat pr 78.8 0.069 1.5E-06 51.9 -6.5 80 160-239 42-122 (326)
86 smart00364 LRR_BAC Leucine-ric 75.4 1.7 3.8E-05 26.7 1.2 18 518-535 2-19 (26)
87 smart00367 LRR_CC Leucine-rich 60.8 4.7 0.0001 24.7 1.0 15 541-555 2-16 (26)
88 PF13516 LRR_6: Leucine Rich r 57.1 6.4 0.00014 23.5 1.2 14 518-531 2-15 (24)
89 smart00365 LRR_SD22 Leucine-ri 55.7 9.8 0.00021 23.5 1.8 16 518-533 2-17 (26)
90 smart00368 LRR_RI Leucine rich 38.7 24 0.00053 22.0 1.7 14 518-531 2-15 (28)
91 KOG3763 mRNA export factor TAP 28.1 21 0.00046 39.9 0.2 80 374-453 216-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.5e-68 Score=649.26 Aligned_cols=643 Identities=28% Similarity=0.450 Sum_probs=432.3
Q ss_pred CCeeEEeccCCCh-hhhcceeeeecccCccChHHHHHHhhhCCCCchhhhHhhhccCceEEeCCCceeehHHHHHHHHHH
Q 003683 1 MNILQISFDGLQD-SEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLI 79 (803)
Q Consensus 1 ~~~L~lSYd~L~~-~~k~cFL~~a~fp~~~~~~~l~~~w~a~gf~~~~~~~~Li~r~li~~~~~~~v~mHdll~d~~~~i 79 (803)
+++|++|||+|++ .+|.||+||||||++.+++.+..++.++|+.++.|++.|++||||++. .+.++|||++|+||++|
T Consensus 423 ~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i 501 (1153)
T PLN03210 423 EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEI 501 (1153)
T ss_pred HHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHH
Confidence 3589999999987 589999999999999999999988888899899999999999999998 68899999999999999
Q ss_pred HhhcCCCCCCCccccccchHHHHHHhhCcCCcceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCc----------
Q 003683 80 VTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNV---------- 149 (803)
Q Consensus 80 ~~~e~~~~~~~~~~l~~~~di~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~---------- 149 (803)
+++++ .+|++|+|+|+++|+++++.+++|++++++|+++.. .. .+..+...+|.+|++|++|.+..+
T Consensus 502 ~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~-~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~ 578 (1153)
T PLN03210 502 VRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID-EI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW 578 (1153)
T ss_pred HHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC-cc-ceeeecHHHHhcCccccEEEEeccccccccccee
Confidence 99998 789999999999999999999999999999999988 77 678899999999999999999654
Q ss_pred cccCccccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCC
Q 003683 150 QLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPN 229 (803)
Q Consensus 150 ~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~ 229 (803)
++++++..+|.+||+|+|.+|+++.+|..+.+.+|++|+|+++.++.+|.++..+++|+.|+|+++.....+|+++.+++
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~ 658 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCc
Confidence 35667888899999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred ccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCE
Q 003683 230 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQ 309 (803)
Q Consensus 230 L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 309 (803)
|++|++++|..+..+|.+++. +++|+.
T Consensus 659 Le~L~L~~c~~L~~lp~si~~-----------------------------------------------------L~~L~~ 685 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQY-----------------------------------------------------LNKLED 685 (1153)
T ss_pred ccEEEecCCCCccccchhhhc-----------------------------------------------------cCCCCE
Confidence 999999999777766654443 333344
Q ss_pred EecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCCCEEecCCCCCC
Q 003683 310 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF 389 (803)
Q Consensus 310 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~ 389 (803)
|++++|..++.+|..+ ++++|+.|++++|..++.+|.. .++|+.|++++|.+..+|..+ .+++|+.|.+.++...
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchh
Confidence 5555555555555544 4666666666666655555543 245666677777766666554 4566666666654321
Q ss_pred cc-------ccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCc-ccCCCchhhhhccCceEeccCCCCCC
Q 003683 390 AR-------VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPP 461 (803)
Q Consensus 390 ~~-------~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~~~~ 461 (803)
.. .+......++|+.|++++|.....+|..++++++|+.|++++|. +..+|..+ .+++|+.|++++|..+.
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 10 11111223556666666666666666666666666666665542 33444433 45555555555554322
Q ss_pred CCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCC-CCcccchhhhcc
Q 003683 462 SSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN-NFVTLPASINSL 540 (803)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l 540 (803)
.. |. ..++|+.|+|++|.+. .+|..+..+++|+.|+|++| +++.+|..+..+
T Consensus 840 ~~----------------------p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 840 TF----------------------PD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred cc----------------------cc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 11 00 1134555555555542 34555555555555555542 344455445555
Q ss_pred cccCccccccccccCcCC--CCCCCceEEEecCCccceeecccc-ccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhh
Q 003683 541 LNLKELEMEDCKRLQFLP--QLPPNIIFVKVNGCSSLVTLLGAL-KLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEA 617 (803)
Q Consensus 541 ~~L~~L~L~~c~~L~~lp--~lp~sL~~L~~~~C~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (803)
++|+.|++++|..|+.++ ..|.++..+. .++.+ .++... ....+|.++.... .++.
T Consensus 893 ~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~-~n~~~--~~p~~~~l~f~nC~~L~~~a------------------~l~~ 951 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASWNGSPSEVAMAT-DNIHS--KLPSTVCINFINCFNLDQEA------------------LLQQ 951 (1153)
T ss_pred cCCCeeecCCCcccccccCCCCchhhhhhc-ccccc--cCCchhccccccccCCCchh------------------hhcc
Confidence 555555555555444332 1111111000 00000 000000 0001333221100 0110
Q ss_pred ccCCCCceEEeecCCCCCCCccccCCCceEE-EEcCCCCcCCCcEEEEEEEEEEeeCCCcccccccCCcceeEEEEecCC
Q 003683 618 VSDPLKDFSTVIPGSKIPKWFMYQNEGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSD 696 (803)
Q Consensus 618 ~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~c~~~~~~ 696 (803)
......+++||.++|+||.||+.|++++ |.+|+.|. ...+.||++|+|+++...... ...+.+.+.|.+.+..
T Consensus 952 ---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~--~~~~~~~~~c~~~~~~ 1025 (1153)
T PLN03210 952 ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFII--SVSFDIQVCCRFIDRL 1025 (1153)
T ss_pred ---cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccC--CCceeEEEEEEEECCC
Confidence 1122357899999999999999999998 99999888 678999999999976654211 1245567788877644
Q ss_pred CCeeEEecccccCCCCCeEEEEEecCcccc----------cc--ccccccCeEEEEEeccccccccCCCCCceEEEEeee
Q 003683 697 RGFFITFGGKFSHSGSDHLWLLFLSPRECY----------DR--RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGF 764 (803)
Q Consensus 697 ~~~~~~~~~~~~~~~s~h~~~~~~~~~~~~----------~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv 764 (803)
+.... ....+|+|+.|.....+. +. .+...++|+.+.|. .. .....++||+|||
T Consensus 1026 ~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~---~~~~~~~~~~cg~ 1091 (1153)
T PLN03210 1026 GNHFD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFR----LT---NKNSQLKLKGCGI 1091 (1153)
T ss_pred CCccc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEE----Ee---cCCCCeEEEeeeE
Confidence 43321 113444444443321110 10 11224678777775 11 1223479999999
Q ss_pred eeeecccccc
Q 003683 765 HPVYMHEVEE 774 (803)
Q Consensus 765 ~liy~~~~~~ 774 (803)
+++|+.+..|
T Consensus 1092 ~~~~~~~~~~ 1101 (1153)
T PLN03210 1092 RLSEDDSSLN 1101 (1153)
T ss_pred EEeccCCCcc
Confidence 9999665443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-39 Score=398.24 Aligned_cols=491 Identities=20% Similarity=0.231 Sum_probs=305.9
Q ss_pred cCCCCCCCccccccch-HHHHH---HhhCcCCcceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCccccCcc---
Q 003683 83 QSPEEPGKRSRLWRQE-EVRHV---LRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL--- 155 (803)
Q Consensus 83 e~~~~~~~~~~l~~~~-di~~~---l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~--- 155 (803)
++..+|+++.+.|+.. +.|.+ .+. +..+++.+.+..+ +. ...+ +.+|..+++|++|++++|.+.+.+
T Consensus 39 ~~~~~~~~~~~~w~~~~~~c~w~gv~c~--~~~~v~~L~L~~~-~i--~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~ 112 (968)
T PLN00113 39 SSINDPLKYLSNWNSSADVCLWQGITCN--NSSRVVSIDLSGK-NI--SGKI-SSAIFRLPYIQTINLSNNQLSGPIPDD 112 (968)
T ss_pred HhCCCCcccCCCCCCCCCCCcCcceecC--CCCcEEEEEecCC-Cc--cccC-ChHHhCCCCCCEEECCCCccCCcCChH
Confidence 3345677777888643 34432 222 2457888888877 44 2223 467889999999999988876432
Q ss_pred -ccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCch-hccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccE
Q 003683 156 -EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEE 232 (803)
Q Consensus 156 -~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~L~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 232 (803)
....++||+|++++|.+........+++|++|+|++|.+. .+|..++++++|++|++++|.....+| .+.++++|++
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 2234688888888887754322345677888888887776 567777777888888887777655544 4777777777
Q ss_pred EeccCCccccccCccccccCcccc------------------cCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccc
Q 003683 233 LYLEGCTKLRKVHPSLLLHNKLIF------------------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 294 (803)
Q Consensus 233 L~L~~~~~l~~i~~~~~~l~~L~~------------------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i 294 (803)
|++++|.....+|..++.+.+|+. +++|++|++++|.+.+.+|..++++++|+.|++++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 777777554455555544433332 34555566666555555555566666666666665555
Q ss_pred c-ccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCccccc-ccCccc
Q 003683 295 K-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSI 372 (803)
Q Consensus 295 ~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l 372 (803)
. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+. .+|..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 4 45555556666666666665555555555555666666666666555555555555666666666666555 455555
Q ss_pred CCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCccc-CCCchhhhhccCce
Q 003683 373 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRT 451 (803)
Q Consensus 373 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~ 451 (803)
+.+++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 55566666666655555555544444444444444444444444444455555555555555544 23444444444444
Q ss_pred EeccC------------------------CCCCCCCCcccccccccccC-CcchhhhccCCCCCCCCCCCEEeCCCCCCC
Q 003683 452 LSFSG------------------------CNGPPSSASWHLHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLSDCGLG 506 (803)
Q Consensus 452 L~L~~------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 506 (803)
|++++ |......+.......+..+. ..+.+.+..|..+..+++|+.|+|++|.+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 44444 43221111111111222222 234455566777888889999999999886
Q ss_pred CCCCCCCCCCCCCCCEEecCCCCCc-ccchhhhcccccCccccccccccCcCCCC---CCCceEEEecCCccceeecc
Q 003683 507 EGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLG 580 (803)
Q Consensus 507 ~~~~~~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~C~~L~~l~~ 580 (803)
+.+|..++.+++|++|+|++|.++ .+|..+..+++|+.|+|++|+....+|.. .++|+.+++++|.-...+|.
T Consensus 513 -~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 513 -GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred -eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 678888899999999999999988 67888999999999999999877777742 35788899988876655553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-37 Score=380.55 Aligned_cols=446 Identities=19% Similarity=0.229 Sum_probs=297.0
Q ss_pred CcceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCccccCccc-cCCCCccEEEecCCCCC-CCCCCC-CCCCeeE
Q 003683 110 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLK-SLPSNL-QLDKIVE 186 (803)
Q Consensus 110 ~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~-~~~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~ 186 (803)
...++.+.+..+ +. ...++...|.++++||+|++++|.+.+.+. ...++|++|++++|.+. .+|..+ .+.+|++
T Consensus 92 l~~L~~L~Ls~n-~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNN-QL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCC-cc--CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 345667777666 33 345666677778888888887777654322 12346667777666654 455545 5666666
Q ss_pred EEeCCCCch-hccccccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccCcccc--------
Q 003683 187 FKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-------- 256 (803)
Q Consensus 187 L~L~~~~i~-~l~~~~~~L~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~-------- 256 (803)
|++++|.+. .+|..+.++++|++|++++|.....+| .++++++|++|++++|.....+|..++.+.+|+.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 666666654 456666666666666666665544433 3555566666666555433344444444433332
Q ss_pred ----------cCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCcccc-ccchhhhhcCCCCEEecCCCCCCCCCCccC
Q 003683 257 ----------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 325 (803)
Q Consensus 257 ----------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 325 (803)
+++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 356666777777776667777777777777777777665 566666666666666666666655666666
Q ss_pred cCCCCCcEEEecCCCCCccCcccccccccccccccCccccc-------------------------ccCcccCCCCCCCE
Q 003683 326 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-------------------------EVPSSIELLPGLEL 380 (803)
Q Consensus 326 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-------------------------~l~~~l~~l~~L~~ 380 (803)
..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 66666666666666666666666666666666666655554 33444555666666
Q ss_pred EecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCC
Q 003683 381 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 460 (803)
Q Consensus 381 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 460 (803)
|++++|.+.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+....+.....++|+.|++++|...
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS 488 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence 66666666666666666667777777777666666666666677777777777776644333445688999999998854
Q ss_pred CCCCcc-cccccccccC-CcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCc-ccchhh
Q 003683 461 PSSASW-HLHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASI 537 (803)
Q Consensus 461 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~-~lp~~i 537 (803)
...+.. .....+..+. ..+.+.+..|..+..+++|+.|+|++|.++ +.+|..++.+++|+.|+|++|+++ .+|..+
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 332211 1111222233 345566778888999999999999999997 789999999999999999999999 799999
Q ss_pred hcccccCccccccccccCcCCC
Q 003683 538 NSLLNLKELEMEDCKRLQFLPQ 559 (803)
Q Consensus 538 ~~l~~L~~L~L~~c~~L~~lp~ 559 (803)
..+++|+.|++++|+....+|.
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hcCcccCEEeccCCcceeeCCC
Confidence 9999999999999998888875
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-32 Score=318.55 Aligned_cols=373 Identities=21% Similarity=0.240 Sum_probs=242.3
Q ss_pred CeeEEeccCCChhhhcceeeeecccCc--cChHHHHHHhhhCCCCch---------hh---hHhhhccCceEEeCC----
Q 003683 2 NILQISFDGLQDSEKKIFLDVACFFKR--WDRDYVAKILEGCGFSPV---------IG---IEVLIERSLLTVDDY---- 63 (803)
Q Consensus 2 ~~L~lSYd~L~~~~k~cFL~~a~fp~~--~~~~~l~~~w~a~gf~~~---------~~---~~~Li~r~li~~~~~---- 63 (803)
+||++|||+||+++|.||||||+||+| |+++.++.+|+||||+.. .| +.+|++++|++..++
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 689999999998899999999999999 999999999999999854 22 999999999997642
Q ss_pred CceeehHHHHHHHHHHHhhcCCCCCCCccccccchHHHHHHhhCcCCcceEEEEEecCCCCccccccCHHhhhcCCCcce
Q 003683 64 NTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGL 143 (803)
Q Consensus 64 ~~v~mHdll~d~~~~i~~~e~~~~~~~~~~l~~~~di~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~ 143 (803)
..++|||++||||.+|+.+....+.... ....-...-..+......++++++..+ +. ..+. .+ ...++|++
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~i---v~~~~~~~~~~~~~~~~~~rr~s~~~~-~~---~~~~-~~-~~~~~L~t 549 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQI---VSDGVGLSEIPQVKSWNSVRRMSLMNN-KI---EHIA-GS-SENPKLRT 549 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceE---EECCcCccccccccchhheeEEEEecc-ch---hhcc-CC-CCCCccce
Confidence 5789999999999999994332221111 000000000112233457788888776 33 1111 11 22347999
Q ss_pred EEecCcc--cc---CccccCCCCccEEEecCCC-CCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCC
Q 003683 144 LKINNVQ--LL---EGLEYLSNKLRLLDWHRYP-LKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE 216 (803)
Q Consensus 144 L~l~~~~--l~---~~~~~~~~~Lr~L~l~~~~-l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~ 216 (803)
|-+..|. +. ..++...+.||+||+++|. +..+|+.+ .+-+|++|+++++.+..+|.++++|..|.+||+..+.
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 9998875 22 2333334599999999765 78999998 7999999999999999999999999999999999998
Q ss_pred CCCCCCCCCC-CCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCcccc
Q 003683 217 NLIKTPDFTE-APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK 295 (803)
Q Consensus 217 ~~~~~~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~ 295 (803)
.+..++.+.. +++||+|.+..-. .......+..++.+.+|+.+....... .+-..+..+..|..
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~--------- 694 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRS--------- 694 (889)
T ss_pred ccccccchhhhcccccEEEeeccc----cccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHH---------
Confidence 7777776554 9999999997632 222223333444455555555533221 11111111111111
Q ss_pred ccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCccccc------ccccccccccCcccccccC
Q 003683 296 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT------TMEDLSELNLDGTSITEVP 369 (803)
Q Consensus 296 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~------~l~~L~~L~L~~~~l~~l~ 369 (803)
..+.+.+.+ ......+..+..+.+|+.|.+.+|........... .++++..+.+.++.....+
T Consensus 695 ----------~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 695 ----------LLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred ----------HhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 111122222 22233344456677777777777766543222211 1344555555555555555
Q ss_pred cccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecC
Q 003683 370 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSG 409 (803)
Q Consensus 370 ~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 409 (803)
.+....++|+.|.+..|.....+.+....+..++.+.+..
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f 803 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF 803 (889)
T ss_pred chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecc
Confidence 6666778888888888888777666665565565544433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.3e-32 Score=284.83 Aligned_cols=353 Identities=24% Similarity=0.338 Sum_probs=276.3
Q ss_pred CCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCcc-ccccCcccccc
Q 003683 174 SLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK-LRKVHPSLLLH 251 (803)
Q Consensus 174 ~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~-l~~i~~~~~~l 251 (803)
.+|.+. .+.+++.|.|..+++..+|++++.|.+|++|.+++|++...-..++.++.|+.+.++.|.. -..+|+.++.+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 456665 6777777777777777777777777777777777776665556677777777777766531 12466655554
Q ss_pred CcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchh-hhhcCCCCEEecCCCCCCCCCCccCcCCCC
Q 003683 252 NKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQC 330 (803)
Q Consensus 252 ~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 330 (803)
.. |.+||+++|.+ ...|..+..-+++-.|+|++|+|..+|.. +-+++.|-.|+|++| .++.+|+.+..+.+
T Consensus 103 ~d------Lt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 103 KD------LTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred cc------ceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 43 34477777653 45677777777888888888888888866 456777888888874 57778887888888
Q ss_pred CcEEEecCCCCCccCcccccccccccccccCccccc--ccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEec
Q 003683 331 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 408 (803)
Q Consensus 331 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 408 (803)
|+.|.|++|....--...+..+++|+.|++++++-+ .+|.++..+.+|..++++.|. +...|..+.++++|+.|+|+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccC
Confidence 888888888765544455567788888888887655 788888888899999988765 56778888899999999999
Q ss_pred CCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCC
Q 003683 409 GCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS 488 (803)
Q Consensus 409 ~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (803)
+|.+. .+.-..+...+|++|+++.|+++.+|+.+..+++|+.|.+.+|+.. -..+|..
T Consensus 254 ~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~---------------------FeGiPSG 311 (1255)
T KOG0444|consen 254 GNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT---------------------FEGIPSG 311 (1255)
T ss_pred cCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc---------------------ccCCccc
Confidence 97644 4444556678999999999999999999999999999999988722 1234888
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccchhhhcccccCccccccccccCcCCC
Q 003683 489 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ 559 (803)
Q Consensus 489 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 559 (803)
++.+..|+.+...+|.+ +..|+.++.|..|+.|.|+.|.+.++|+.|+-|+.|+.|++.+|++|...|.
T Consensus 312 IGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999999999999998 6899999999999999999999999999999999999999999999986654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-29 Score=265.00 Aligned_cols=361 Identities=24% Similarity=0.289 Sum_probs=238.3
Q ss_pred CccEEEecCCCCCCCCC----CCCCCCeeEEEeCCCCchhc-cccccCCCCccEEEecCCCCCCCCCCCCCCC-CccEEe
Q 003683 161 KLRLLDWHRYPLKSLPS----NLQLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIKTPDFTEAP-NLEELY 234 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~----~~~l~~L~~L~L~~~~i~~l-~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~-~L~~L~ 234 (803)
.-+.|++++..+..+.. .+-+..-+.|++++|.+..+ +.+|.++++|+.+++..|. ++.+|.++... +|++|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEe
Confidence 34444444444444321 11334455566666666544 3445666666666666654 33444444333 366666
Q ss_pred ccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccch-hhhhcCCCCEEecC
Q 003683 235 LEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLN 313 (803)
Q Consensus 235 L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~ 313 (803)
|.+| .+..+.. ..|..++.|++|||+.|.+...--..+..-.++++|+|++|.|+.+-. .+..+.+|..|.|+
T Consensus 132 L~~N-~I~sv~s-----e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 132 LRHN-LISSVTS-----EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eecc-ccccccH-----HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 6654 2333221 234445566666666665555444555555666666666666665543 35556666666666
Q ss_pred CCCCCCCCC-ccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcc-cCCCCCCCEEecCCCCCCcc
Q 003683 314 DCKNLSSLP-VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFAR 391 (803)
Q Consensus 314 ~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~~~~~~~ 391 (803)
+|. +..+| ..|+++++|+.|+|..|.+...-.-.+..+++|+.|.|..|.+.++.++ +-.+.++++|+|..|+....
T Consensus 206 rNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 644 33333 3455577777777776655444344566777888888888888877654 67778888888888887777
Q ss_pred ccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCc-hhhhhccCceEeccCCCCCCCCCcccccc
Q 003683 392 VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHL 470 (803)
Q Consensus 392 ~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 470 (803)
-..++.++++|+.|+++.|.+...-++.....++|++|+|+.|.|+.+++ ++..+..|++|.|+.|...
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~---------- 354 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID---------- 354 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH----------
Confidence 77778888888888888888777777777778888888888888888876 4555888888888887721
Q ss_pred cccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCC---CCCCCCCCCCCEEecCCCCCcccch-hhhcccccCcc
Q 003683 471 PFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI---PSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKEL 546 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~---~~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L 546 (803)
...-..+.++++|++|||++|.+. ..+ ...+.++++|+.|.+.||++..+|. .+..+++|++|
T Consensus 355 ------------~l~e~af~~lssL~~LdLr~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 355 ------------HLAEGAFVGLSSLHKLDLRSNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ------------HHHhhHHHHhhhhhhhcCcCCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 111334677889999999999875 222 3346779999999999999999986 68899999999
Q ss_pred cccccc
Q 003683 547 EMEDCK 552 (803)
Q Consensus 547 ~L~~c~ 552 (803)
+|.+|.
T Consensus 422 dL~~Na 427 (873)
T KOG4194|consen 422 DLGDNA 427 (873)
T ss_pred cCCCCc
Confidence 999987
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-29 Score=264.55 Aligned_cols=381 Identities=22% Similarity=0.219 Sum_probs=282.3
Q ss_pred cceEEecCccccCc-----cccCCCCccEEEecCCCCCCCCCC-C-CCCCeeEEEeCCCCchhccccccCCCCccEEEec
Q 003683 141 LGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 213 (803)
Q Consensus 141 Lr~L~l~~~~l~~~-----~~~~~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~ 213 (803)
-+.|+++++.+... ...+|..-+.|++++|.+..+.-. | ++++|+.++|.+|.++.+|.......+|+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 35566666665542 345566677788888888777644 3 7888888888888888888888777888888888
Q ss_pred CCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCc
Q 003683 214 HSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT 292 (803)
Q Consensus 214 ~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 292 (803)
+|.+..... .++-++.|+.|+|+.| .+.+++..- ...-.++++|+|++|.++..-...|.++.+|..|.|+.|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~s-----fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRN-LISEIPKPS-----FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCC-----CCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 886544322 4777888888888876 566655321 111345777888888888877788888888888888888
Q ss_pred cccccchh-hhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccC-c
Q 003683 293 DIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-S 370 (803)
Q Consensus 293 ~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~ 370 (803)
.++.+|.. +.++++|+.|+|..|..-..-...|..+++|+.|.|..|.+..--...+-.+.++++|+|..|++.++. .
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 88888865 444888888888886432221334777888888888888777666667778888888999988888775 4
Q ss_pred ccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCc-hhhhhccC
Q 003683 371 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNL 449 (803)
Q Consensus 371 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L 449 (803)
++-+++.|+.|++++|.+...-+++....++|+.|+|++|.+..--++.+..+..|++|.|+.|.+..+.. .+..+++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 57888889999999988888777778888899999998888777777778888889999999998887765 44558889
Q ss_pred ceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCC-CCCCCCCCCCEEecCCC
Q 003683 450 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDIGNLHSLNELYLSKN 528 (803)
Q Consensus 450 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~-~~l~~l~~L~~L~Ls~n 528 (803)
++|+|++|..... .......+.++++|+.|++.+|++. .+| .++.++++|+.|+|.+|
T Consensus 368 ~~LdLr~N~ls~~-------------------IEDaa~~f~gl~~LrkL~l~gNqlk--~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 368 HKLDLRSNELSWC-------------------IEDAAVAFNGLPSLRKLRLTGNQLK--SIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhcCcCCeEEEE-------------------EecchhhhccchhhhheeecCceee--ecchhhhccCcccceecCCCC
Confidence 9999988762111 1111334667888899999998884 344 56888889999999888
Q ss_pred CCccc-chhhhcccccCccccc
Q 003683 529 NFVTL-PASINSLLNLKELEME 549 (803)
Q Consensus 529 ~l~~l-p~~i~~l~~L~~L~L~ 549 (803)
.+.++ |..+..+ .|+.|.+.
T Consensus 427 aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cceeecccccccc-hhhhhhhc
Confidence 88755 4456666 77877765
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=4.2e-31 Score=265.02 Aligned_cols=400 Identities=24% Similarity=0.310 Sum_probs=241.2
Q ss_pred cceEEecCcccc---CccccCCCCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCC
Q 003683 141 LGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE 216 (803)
Q Consensus 141 Lr~L~l~~~~l~---~~~~~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~ 216 (803)
|+.|.+++|.+. .++..++ .|.+|.++++.+..+|+.+ .+..++.|+.++|++.++|+.+..+..|+.++.+++.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 444555555432 3333333 5666666666666666665 6666666677777777777776666777777777666
Q ss_pred CCCCCCCCCCCCCccEEeccCCccccccCccccccCcccc-----------------cCCccEEEecCCCCCCCCCcccC
Q 003683 217 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-----------------VESLKILILSGCLKLRKFPHVVG 279 (803)
Q Consensus 217 ~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~-----------------l~~L~~L~l~~~~~~~~~~~~l~ 279 (803)
....+++++.+..|+.|+..+| .+..+|.+++++.++.. ++.|++|+...| ..+.+|+.++
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg 203 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELG 203 (565)
T ss_pred eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhc
Confidence 6655666666666666666554 55566666555544433 233444555443 3445566666
Q ss_pred CCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCc-CCCCCcEEEecCCCCCccCccccccccccccc
Q 003683 280 SMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 358 (803)
Q Consensus 280 ~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 358 (803)
.+.+|+-|++..|++..+| .+..+..|++|.+..| .++.+|.... .+++|.+||+..| .+++.|+.+..+.+|..|
T Consensus 204 ~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERL 280 (565)
T ss_pred chhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhh
Confidence 6666666666666666666 5566666666666553 4555665433 6777777887775 456677777777788888
Q ss_pred ccCcccccccCcccCCCCCCCEEecCCCCCCcc-------------------------------------ccc----ccc
Q 003683 359 NLDGTSITEVPSSIELLPGLELLNLNDCKNFAR-------------------------------------VPS----SIN 397 (803)
Q Consensus 359 ~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~-------------------------------------~p~----~~~ 397 (803)
++++|.|+.+|.+++++ .|+.|.+.+|.+-+. .+. ...
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 88888888888888887 778887777753210 000 011
Q ss_pred CCCCCCEEEecCCCCCCcCCcccCCC---CCCcEEecCCCcccCCC------------------------chhhhhccCc
Q 003683 398 GLKSLKTLNLSGCCKLENVPDTLGQV---ESLEELDISETAVRRPP------------------------SSVFLMKNLR 450 (803)
Q Consensus 398 ~l~~L~~L~L~~c~~~~~~~~~~~~l---~~L~~L~L~~~~i~~lp------------------------~~~~~l~~L~ 450 (803)
.+.+.+.|++++ ...+.+|+.+... .-....++++|++.++| ..+..+++|.
T Consensus 360 ~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 360 AIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 233455555555 2233344322111 11344455555544444 3344567788
Q ss_pred eEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCC
Q 003683 451 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNF 530 (803)
Q Consensus 451 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l 530 (803)
.|++++|. ...+|..++++..|+.|+++.|++ ..+|..+..+..|+.+-.++|++
T Consensus 439 ~L~L~NN~-----------------------Ln~LP~e~~~lv~Lq~LnlS~NrF--r~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 439 FLDLSNNL-----------------------LNDLPEEMGSLVRLQTLNLSFNRF--RMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred eeecccch-----------------------hhhcchhhhhhhhhheeccccccc--ccchHHHhhHHHHHHHHhccccc
Confidence 88887765 334466777888888888888877 45776666666666666666777
Q ss_pred cccchh-hhcccccCccccccccccCcCCCCCCCceEEEecCCccceeecccc
Q 003683 531 VTLPAS-INSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGAL 582 (803)
Q Consensus 531 ~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~~L~~l~~~~ 582 (803)
.++++. +.++.+|.+|++.+|. ++.+|. - +.+|++|+++....
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp---~-----LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNND-LQQIPP---I-----LGNMTNLRHLELDG 537 (565)
T ss_pred cccChHHhhhhhhcceeccCCCc-hhhCCh---h-----hccccceeEEEecC
Confidence 776665 7777777777777664 444432 2 22455555554433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.3e-29 Score=266.36 Aligned_cols=357 Identities=22% Similarity=0.264 Sum_probs=302.7
Q ss_pred CCcceEEecCccccCcc-----ccCCCCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEe
Q 003683 139 TNLGLLKINNVQLLEGL-----EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 212 (803)
Q Consensus 139 ~~Lr~L~l~~~~l~~~~-----~~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L 212 (803)
+-.|-+++++|.++++- ..+ ..+++|.+....+..+|... .+.+|+.|.+++|++.++-.++..|+.|+.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 34555666677666442 222 47888999988999999887 899999999999999999999999999999999
Q ss_pred cCCCCCCC--CCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEcc
Q 003683 213 SHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 290 (803)
Q Consensus 213 ~~~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 290 (803)
+.|++... ++++-++..|..|+|++| .+.++|..+...+ ++-.|++++|++.+.....+.++.-|-.|+|+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AK------n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAK------NSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhc------CcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 99976543 557999999999999997 7888887655544 44559999999888777788899999999999
Q ss_pred CccccccchhhhhcCCCCEEecCCCCC----CCCCCccCcCCCCCcEEEecCCCCC-ccCcccccccccccccccCcccc
Q 003683 291 GTDIKELPLSIEHLFGLVQLTLNDCKN----LSSLPVAISSFQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSI 365 (803)
Q Consensus 291 ~~~i~~lp~~l~~l~~L~~L~L~~~~~----l~~lp~~l~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~~~l 365 (803)
+|.+..+|..+..+..|+.|+|++|.. ++.+|. +.+|++|.+++...+ ..+|..+..+.+|..++++.|.+
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 999999999999999999999999864 345554 788999999987654 56899999999999999999999
Q ss_pred cccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCccc--CCCchh
Q 003683 366 TEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR--RPPSSV 443 (803)
Q Consensus 366 ~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~~ 443 (803)
..+|..+-.+++|+.|+|++|.+. .+....+...+|++|+++.| .+..+|+.+..++.|+.|.+.+|.+. .+|+.+
T Consensus 235 p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 999999999999999999999864 44445677889999999996 46779999999999999999999876 899999
Q ss_pred hhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEE
Q 003683 444 FLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNEL 523 (803)
Q Consensus 444 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 523 (803)
+.+.+|+.+...+|. ....|..++.++.|+.|.|+.|++. .+|+.+.-++.|+.|
T Consensus 313 GKL~~Levf~aanN~-----------------------LElVPEglcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNK-----------------------LELVPEGLCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVL 367 (1255)
T ss_pred hhhhhhHHHHhhccc-----------------------cccCchhhhhhHHHHHhccccccee--echhhhhhcCCccee
Confidence 999999999988876 2334888999999999999999984 599999999999999
Q ss_pred ecCCCCCcccc
Q 003683 524 YLSKNNFVTLP 534 (803)
Q Consensus 524 ~Ls~n~l~~lp 534 (803)
++..|.-.-+|
T Consensus 368 DlreNpnLVMP 378 (1255)
T KOG0444|consen 368 DLRENPNLVMP 378 (1255)
T ss_pred eccCCcCccCC
Confidence 99998555444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=9.6e-29 Score=248.11 Aligned_cols=407 Identities=22% Similarity=0.255 Sum_probs=284.4
Q ss_pred ceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCccccCccccCC--CCccEEEecCCCCCCCCCCC-CCCCeeEEE
Q 003683 112 LVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNL-QLDKIVEFK 188 (803)
Q Consensus 112 ~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~--~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~ 188 (803)
....+.++.+ ...+++ .++.++..++.|+.+.|.+..-+.... .+|+.|+++.+.+..+|+.+ .+..|..|+
T Consensus 69 ~l~vl~~~~n----~l~~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 69 CLTVLNVHDN----KLSQLP-AAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred ceeEEEeccc----hhhhCC-HHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 3444555555 234444 467777777788887777654332222 36777888888888887777 777888888
Q ss_pred eCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccc------------
Q 003683 189 MCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF------------ 256 (803)
Q Consensus 189 L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~------------ 256 (803)
..+|++..+|+++.++.+|..+++.+|.....+|+.-.++.|++|+...| -++.+|+.++.+.+|..
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 88888888888888777777788877776666666555777777777664 56777777666555443
Q ss_pred ----cCCccEEEecCCCCCCCCCcc-cCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCC
Q 003683 257 ----VESLKILILSGCLKLRKFPHV-VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 331 (803)
Q Consensus 257 ----l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 331 (803)
+..|+.|.++.|.+. .+|.. ..++.+|..|++..|+++++|..+..+.+|.+||+++| .+..+|..++++ +|
T Consensus 223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-ee
Confidence 223344444444433 33333 34778888888888888888888888888888888874 567788778888 88
Q ss_pred cEEEecCCCCCccC-------------------------------------c----ccccccccccccccCcccccccCc
Q 003683 332 RNLKLSGCSKLKKF-------------------------------------P----QIVTTMEDLSELNLDGTSITEVPS 370 (803)
Q Consensus 332 ~~L~Ls~~~~~~~~-------------------------------------~----~~~~~l~~L~~L~L~~~~l~~l~~ 370 (803)
+.|.+.||..-+.- + .....+.+.+.|++++-+++.+|.
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd 379 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD 379 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence 88888876432100 0 001133456777778878887776
Q ss_pred ccC---CCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhc
Q 003683 371 SIE---LLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMK 447 (803)
Q Consensus 371 ~l~---~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~ 447 (803)
... .-.-....+++.|.+ .++|..+..+..+.+.-+..++....+|..+..+++|..|++++|.+.++|..++.+.
T Consensus 380 EVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv 458 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLV 458 (565)
T ss_pred HHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhh
Confidence 532 223367888888764 5667767777777776677778888888889999999999999999999999999999
Q ss_pred cCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCC-CCCCCCCCCEEecC
Q 003683 448 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLS 526 (803)
Q Consensus 448 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~-~l~~l~~L~~L~Ls 526 (803)
.|+.|+++.|+.... |..+-.+..|+.+-.++|++. .++. .+.++.+|..|||.
T Consensus 459 ~Lq~LnlS~NrFr~l-----------------------P~~~y~lq~lEtllas~nqi~--~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRML-----------------------PECLYELQTLETLLASNNQIG--SVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred hhheecccccccccc-----------------------hHHHhhHHHHHHHHhcccccc--ccChHHhhhhhhcceeccC
Confidence 999999998862211 222333345566666677774 3444 48888888888888
Q ss_pred CCCCcccchhhhcccccCccccccccc
Q 003683 527 KNNFVTLPASINSLLNLKELEMEDCKR 553 (803)
Q Consensus 527 ~n~l~~lp~~i~~l~~L~~L~L~~c~~ 553 (803)
+|.+..+|+.++++++|++|++++|+.
T Consensus 514 nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 514 NNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCchhhCChhhccccceeEEEecCCcc
Confidence 888888888888888888888888873
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-27 Score=263.37 Aligned_cols=413 Identities=22% Similarity=0.240 Sum_probs=313.2
Q ss_pred CHHhhhcCCCcceEEecCccccCccccCC--CCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCc
Q 003683 131 SAKAFSLMTNLGLLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNML 207 (803)
Q Consensus 131 ~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~--~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L 207 (803)
+.++.++.-+|+.|++++|++...+..+. .+|+.|.++.|.+.++|... ++.+|++|+|.+|.++.+|.++..+.+|
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNL 116 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcc
Confidence 34566666669999999998765433322 58999999999999999776 8999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEE
Q 003683 208 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 287 (803)
Q Consensus 208 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 287 (803)
++|++++|.+...++-+..+..++.+..++|..+..++. . .++.+++..+.+.+.++..+..+.. .|
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~-------~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----T-------SIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----c-------cchhhhhhhhhcccchhcchhhhhe--ee
Confidence 999999998777777788888888888888733333221 1 1566888888888888888888877 89
Q ss_pred EccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccc
Q 003683 288 LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 367 (803)
Q Consensus 288 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 367 (803)
+|..|.+. ...+..+.+|+.|....+.... +- -.-++|+.|+.+.|.+....+. ....+|+.++++.+.+..
T Consensus 184 dLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 184 DLRYNEME--VLDLSNLANLEVLHCERNQLSE-LE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN 255 (1081)
T ss_pred ecccchhh--hhhhhhccchhhhhhhhcccce-EE---ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc
Confidence 99999887 3456677778888777654322 11 2257899999999888744332 234588999999999999
Q ss_pred cCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhh--
Q 003683 368 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL-- 445 (803)
Q Consensus 368 l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~-- 445 (803)
+|++++.+.+|+.+.+.+|.+ ..+|..+....+|+.|.+..|. ++.+|...+.+.+|+.|+|..|.+..+|+.+..
T Consensus 256 lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL 333 (1081)
T ss_pred chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhh
Confidence 999999999999999999887 7778888888999999988864 567888888899999999999999999985544
Q ss_pred hccCceEeccCCCCCCCCCccc-ccccccccC-CcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCC-CCCCCCCCE
Q 003683 446 MKNLRTLSFSGCNGPPSSASWH-LHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHSLNE 522 (803)
Q Consensus 446 l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~-l~~l~~L~~ 522 (803)
..+|..|..+.++......... ....+..+. ..|.++....+.+.++++|+.|+|++|++. .+|+. +.++..|++
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEE 411 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHH
Confidence 2235666666555332221111 112233333 456677777888999999999999999994 57754 788999999
Q ss_pred EecCCCCCcccchhhhcccccCccccccccccCcCCCCC--CCceEEEe
Q 003683 523 LYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP--PNIIFVKV 569 (803)
Q Consensus 523 L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~~ 569 (803)
|+||||+++.+|.++..++.|++|...+|. +.++|++- +.|+.+|+
T Consensus 412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred HhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec
Confidence 999999999999988888888888887764 55555432 34555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.9e-23 Score=257.66 Aligned_cols=336 Identities=25% Similarity=0.385 Sum_probs=248.2
Q ss_pred CCCCeeEEEeCCCCch-------hccccccCCC-CccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccc
Q 003683 180 QLDKIVEFKMCYSRIE-------ELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH 251 (803)
Q Consensus 180 ~l~~L~~L~L~~~~i~-------~l~~~~~~L~-~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l 251 (803)
++.+|+.|.+..+... .+|+++..++ +|+.|++.++.....++.+ ...+|++|++.+| .+..++.++.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~-- 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVH-- 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccc--
Confidence 6777777777554321 4667776664 5888888877544333344 5677888888775 3444443322
Q ss_pred CcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCC
Q 003683 252 NKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 331 (803)
Q Consensus 252 ~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 331 (803)
.+++|+.|+++++... ..+| .+..+++|+.|++.+|..+..+|..+..+++|
T Consensus 632 ----~l~~Lk~L~Ls~~~~l-----------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 632 ----SLTGLRNIDLRGSKNL-----------------------KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ----cCCCCCEEECCCCCCc-----------------------CcCC-ccccCCcccEEEecCCCCccccchhhhccCCC
Confidence 1333444444444332 3333 24556788888999999999999999999999
Q ss_pred cEEEecCCCCCccCcccccccccccccccCcccc-cccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCC
Q 003683 332 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI-TEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 410 (803)
Q Consensus 332 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l-~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c 410 (803)
+.|++++|..++.+|..+ ++++|+.|++++|.. ..+|. ..++|+.|++.+|.+ ..+|..+ .+++|++|.+.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcc-ccccccc-ccccccccccccc
Confidence 999999999999988766 789999999999854 35553 246899999999874 5667655 5889999998875
Q ss_pred CCCCc-------CCcccCCCCCCcEEecCCCc-ccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhh
Q 003683 411 CKLEN-------VPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 482 (803)
Q Consensus 411 ~~~~~-------~~~~~~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (803)
..... .+......++|+.|++++|. +..+|..+.++++|+.|++++|..+...
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L------------------- 818 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL------------------- 818 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-------------------
Confidence 43211 11122345789999999985 5579999999999999999999855432
Q ss_pred hccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccchhhhcccccCccccccccccCcCCCCC-
Q 003683 483 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP- 561 (803)
Q Consensus 483 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp- 561 (803)
|..+ .+++|+.|++++|... ..+|.. .++|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+
T Consensus 819 ---P~~~-~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 819 ---PTGI-NLESLESLDLSGCSRL-RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred ---CCCC-CccccCEEECCCCCcc-cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 3333 6899999999999765 445543 468999999999999999999999999999999999999988644
Q ss_pred --CCceEEEecCCccceeecc
Q 003683 562 --PNIIFVKVNGCSSLVTLLG 580 (803)
Q Consensus 562 --~sL~~L~~~~C~~L~~l~~ 580 (803)
++|+.+++++|++|+.++.
T Consensus 891 ~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccCCCeeecCCCcccccccC
Confidence 4677889999999987764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=238.38 Aligned_cols=397 Identities=21% Similarity=0.241 Sum_probs=252.0
Q ss_pred eEEEEEecCCCCccccccCHHhhhcCCCcceEEecCccccCccccCC--CCccEEEecCCCCCCCCCCC-CCCCeeEEEe
Q 003683 113 VEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKM 189 (803)
Q Consensus 113 i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~--~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L 189 (803)
+..+.+..+ ....++ ..+..+.+|+.|.++.|.+..-..... ++|++|.+.++.+..+|..+ .+.+|.+|++
T Consensus 47 L~~l~lsnn----~~~~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNN----QISSFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeecccc----ccccCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 555555444 233333 567788899999999988765444333 78999999999999999988 8999999999
Q ss_pred CCCCchhccccccCCCCccEEEecCCCCCCCCC--------------------CCCCCCCccEEeccCCccccccCcccc
Q 003683 190 CYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP--------------------DFTEAPNLEELYLEGCTKLRKVHPSLL 249 (803)
Q Consensus 190 ~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~--------------------~l~~l~~L~~L~L~~~~~l~~i~~~~~ 249 (803)
++|.+..+|.-+..+..+..++.++|......+ ++..+.+ .|+|+.|.-. . ....
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls 196 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLS 196 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhh
Confidence 999999988887777777777777662111111 1222222 3566554322 1 1111
Q ss_pred ccCcccc--------------cCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCC
Q 003683 250 LHNKLIF--------------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 315 (803)
Q Consensus 250 ~l~~L~~--------------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~ 315 (803)
.+.+|+. -++|+.|+...|.+....+ -..-.+|++++++.+.+..+|++++.+.+|+.|+..+|
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccch
Confidence 2222221 2456666666665553222 12235677777777777777777777777777777665
Q ss_pred CCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCc-------------------------
Q 003683 316 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS------------------------- 370 (803)
Q Consensus 316 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~------------------------- 370 (803)
. +..+|..+....+|+.|.+..|. +..+|+....+++|+.|+|..|.+..+|.
T Consensus 275 ~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 275 R-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred h-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 3 34455444445555555554432 23344444445555555555555544443
Q ss_pred c-cCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCc-ccCCCCCCcEEecCCCcccCCCchhhhhcc
Q 003683 371 S-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPSSVFLMKN 448 (803)
Q Consensus 371 ~-l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~-~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 448 (803)
. -...+.|+.|.+.+|.+....-..+.++++||.|+|++|.. ..+|. .+.+++.|++|+|+||.++.+|..+..++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 1 12345677777777777776666677888888888888654 44444 467778888888888888888888888888
Q ss_pred CceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCC
Q 003683 449 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 528 (803)
Q Consensus 449 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n 528 (803)
|++|...+|.... .+.+..++.|+.+|+|.|++.+..+|..... ++|++|||+||
T Consensus 432 L~tL~ahsN~l~~------------------------fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS------------------------FPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hHHHhhcCCceee------------------------chhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 8888877766322 2367788889999999998876666665544 78999999998
Q ss_pred CCccc-chhhhcccccCccccc
Q 003683 529 NFVTL-PASINSLLNLKELEME 549 (803)
Q Consensus 529 ~l~~l-p~~i~~l~~L~~L~L~ 549 (803)
.-..+ -..+..+..+...++.
T Consensus 487 ~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 487 TRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cccccchhhhHHhhhhhheecc
Confidence 63322 1233444444444443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1.4e-16 Score=182.82 Aligned_cols=255 Identities=20% Similarity=0.227 Sum_probs=133.6
Q ss_pred CcceEEecCccccCccccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCC
Q 003683 140 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 219 (803)
Q Consensus 140 ~Lr~L~l~~~~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~ 219 (803)
+-..|+++++.+..-+..++.+|+.|.+.+|.++.+|. .+++|++|++++|+++.+|.. .++|+.|++++|.+.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~- 275 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT- 275 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh-
Confidence 34456666665554444445556666666666665554 245556666666655555532 245555555555432
Q ss_pred CCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccch
Q 003683 220 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 299 (803)
Q Consensus 220 ~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~ 299 (803)
.+|. ...+|+.|++++| .+..+|. . .++|+.|++++|.+..+|.
T Consensus 276 ~Lp~--lp~~L~~L~Ls~N-~Lt~LP~------------------------------~---p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 276 HLPA--LPSGLCKLWIFGN-QLTSLPV------------------------------L---PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hhhh--chhhcCEEECcCC-ccccccc------------------------------c---ccccceeECCCCccccCCC
Confidence 2221 1234555555554 2333332 1 2344445555554444443
Q ss_pred hhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCCC
Q 003683 300 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 379 (803)
Q Consensus 300 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~ 379 (803)
. ..+|+.|.+.+|. +..+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+..+|.. .++|+
T Consensus 320 l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~ 385 (788)
T PRK15387 320 L---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLK 385 (788)
T ss_pred C---cccccccccccCc-ccccccc---ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccc
Confidence 1 1234445555432 3334421 235556666655433 23322 23455566666666665543 24566
Q ss_pred EEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCC
Q 003683 380 LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 458 (803)
Q Consensus 380 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~ 458 (803)
.|++++|.+. .+|.. .++|+.|++++|... .+|.. ..+|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus 386 ~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 386 ELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred eEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 6677666544 24432 246777777776543 35543 235667777777777777777777777777777776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1e-16 Score=184.07 Aligned_cols=239 Identities=25% Similarity=0.261 Sum_probs=156.1
Q ss_pred CCcceEEecCccccCccccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCC
Q 003683 139 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 218 (803)
Q Consensus 139 ~~Lr~L~l~~~~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~ 218 (803)
++|+.|.+.+|.+.. +..++++|++|++++|.++.+|.. +++|+.|++++|.+..+|... .+|+.|++++|++.
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhch---hhcCEEECcCCccc
Confidence 479999999999876 345678999999999999999863 579999999999999988743 67889999999755
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccc
Q 003683 219 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 298 (803)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp 298 (803)
.+|. ..++|++|++++| .+..+|.. ...|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|
T Consensus 296 -~LP~--~p~~L~~LdLS~N-~L~~Lp~l---------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 296 -SLPV--LPPGLQELSVSDN-QLASLPAL---------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASLP 358 (788)
T ss_pred -cccc--cccccceeECCCC-ccccCCCC---------cccccccccccCcccc-cccc---ccccceEecCCCccCCCC
Confidence 4443 3578999999997 56666531 2346668888877653 4432 246778888888877777
Q ss_pred hhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCC
Q 003683 299 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 378 (803)
Q Consensus 299 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L 378 (803)
.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+..+|.. ..+|
T Consensus 359 ~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L 424 (788)
T PRK15387 359 TL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPML---PSGL 424 (788)
T ss_pred CC---Ccccceehhhccc-cccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcc---hhhh
Confidence 53 2456666776643 4445542 245666666665443 23322 23455566666665555532 2244
Q ss_pred CEEecCCCCCCccccccccCCCCCCEEEecCCCCCCc
Q 003683 379 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN 415 (803)
Q Consensus 379 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~ 415 (803)
+.|++++|.+. .+|..+.++++|+.|++++|+..+.
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 45555554432 3454455555555555555544443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-19 Score=180.25 Aligned_cols=265 Identities=23% Similarity=0.258 Sum_probs=162.4
Q ss_pred EecCCCCCCCCCCCCCCCeeEEEeCCCCchhcccc-ccCCCCccEEEecCCCCCCCCC-CCCCCCCccEEeccCCccccc
Q 003683 166 DWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRK 243 (803)
Q Consensus 166 ~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~L~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~ 243 (803)
+.++-.+..+|.+. +..-+.++|..|.|+.+|++ |+.+++|+.|||++|.+....| .|.++++|-.|-+.++..++.
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 33444455555444 33445666666666666543 6677777777777776655544 367777777776666556777
Q ss_pred cCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccch-hhhhcCCCCEEecCCCCCCC---
Q 003683 244 VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS--- 319 (803)
Q Consensus 244 i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~--- 319 (803)
+|...+.- +.+|+.|.+.-|.+.-...+.+..+++|..|.+..|.+..++. .+..+..++.+.+..+....
T Consensus 131 l~k~~F~g-----L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 131 LPKGAFGG-----LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhhHhhh-----HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 66543221 3344446666666666666777777777777777777777766 56667777777766554211
Q ss_pred ---------CCCccCcCCCC----------------------CcEE---EecCCCCCccCc-ccccccccccccccCccc
Q 003683 320 ---------SLPVAISSFQC----------------------LRNL---KLSGCSKLKKFP-QIVTTMEDLSELNLDGTS 364 (803)
Q Consensus 320 ---------~lp~~l~~l~~----------------------L~~L---~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~ 364 (803)
..|..++.+.. ++.+ -.+.|......| ..+..+++|++|+|++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11111111111 1111 111222222222 346677778888888888
Q ss_pred ccccC-cccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcc
Q 003683 365 ITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAV 436 (803)
Q Consensus 365 l~~l~-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i 436 (803)
++.+. .++.....++.|.|..|++...-...|.++..|++|+|.+|++....|..|..+.+|.+|.+-.|.+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 87664 4577777788888877776555555677777788888888777777777777777777777766554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.6e-17 Score=186.37 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=36.3
Q ss_pred CccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCC
Q 003683 161 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 238 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 238 (803)
+...|+++++.++++|..+ +++|+.|+|++|+++.+|..+. .+|++|++++|.+. .+|. .-..+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCC
Confidence 3445555555555555443 2455666666666665555443 35566666555433 2221 01124555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2.7e-16 Score=181.81 Aligned_cols=247 Identities=19% Similarity=0.252 Sum_probs=151.5
Q ss_pred CCcceEEecCccccCccccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCC
Q 003683 139 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 218 (803)
Q Consensus 139 ~~Lr~L~l~~~~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~ 218 (803)
.+...|+++++.+...+..+|+.|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 456788898888877666678899999999999999997663 589999999999999988664 47999999999765
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccc
Q 003683 219 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 298 (803)
Q Consensus 219 ~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp 298 (803)
..++.+. .+|+.|++++| .+..+|..+ .++|+.|++++|.+.. +|..+. .+|+.|++++|.+..+|
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l--------~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENL--------PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCcccccc--------CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCC
Confidence 3333332 47888888876 566666432 2356667777775543 343332 35666666666666555
Q ss_pred hhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCC
Q 003683 299 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 378 (803)
Q Consensus 299 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L 378 (803)
..+. ++|+.|++++|. +..+|..+ .++|+.|+++ +|.+..+|..+ .++|
T Consensus 321 ~~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls------------------------~N~L~~LP~~l--p~~L 369 (754)
T PRK15370 321 ETLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVS------------------------KNQITVLPETL--PPTI 369 (754)
T ss_pred cccc--ccceeccccCCc-cccCChhh--cCcccEEECC------------------------CCCCCcCChhh--cCCc
Confidence 4332 355555555543 33344332 2344444444 44444444332 1345
Q ss_pred CEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcc----cCCCCCCcEEecCCCccc
Q 003683 379 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT----LGQVESLEELDISETAVR 437 (803)
Q Consensus 379 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~----~~~l~~L~~L~L~~~~i~ 437 (803)
+.|++++|.+. .+|..+. .+|+.|++++|... .+|.. .+.++++..|++.+|.+.
T Consensus 370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55555555433 2333222 24555555554433 33432 233466677777777665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=3.5e-16 Score=158.23 Aligned_cols=382 Identities=21% Similarity=0.206 Sum_probs=252.7
Q ss_pred CccccCccccCCCCccEEEecCCCCCCCCCCC--CCCCeeEEEeCCCCchhc-cccccCCCCccEEEecCCCCCCCCC--
Q 003683 148 NVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIKTP-- 222 (803)
Q Consensus 148 ~~~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~L~~L~~L~L~~~~~~~~~~-- 222 (803)
+-.+.+-+..+|..-..++++.|.++.||+.. .+++|+.|||++|+|+.+ |+.|+.|+.|..|-+-+++..+.+|
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 34455566778888899999999999999654 899999999999999987 7789999998888877754555555
Q ss_pred CCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCcccc-------
Q 003683 223 DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK------- 295 (803)
Q Consensus 223 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~------- 295 (803)
.|.++..|+.|.+.-| .+.-+.. ..++.+++|..|.+..|.+....-..+..+..++.+.+..|.+.
T Consensus 135 ~F~gL~slqrLllNan-~i~Cir~-----~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNAN-HINCIRQ-----DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred HhhhHHHHHHHhcChh-hhcchhH-----HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 4889999998888765 2332222 12344666777888877666555557777777777777665521
Q ss_pred ------ccchhhhhcCC----------------------CCEE---ecCCCCCCCCCCc-cCcCCCCCcEEEecCCCCCc
Q 003683 296 ------ELPLSIEHLFG----------------------LVQL---TLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLK 343 (803)
Q Consensus 296 ------~lp~~l~~l~~----------------------L~~L---~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~ 343 (803)
..|..++.... ++.+ -.+.|......|. .|..+++|++|++++|.+..
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 11111111111 1111 1111222222332 37889999999999999999
Q ss_pred cCcccccccccccccccCcccccccCcc-cCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCc-----CC
Q 003683 344 KFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN-----VP 417 (803)
Q Consensus 344 ~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~-----~~ 417 (803)
.-+.++.....+++|.|..|++..+... +..+..|+.|+|.+|++....|..|..+.+|.+|++-.|+..-. +.
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH
Confidence 9999999999999999999999988654 79999999999999999999999999999999999987664321 11
Q ss_pred ccc-----------CCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccC
Q 003683 418 DTL-----------GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALML 486 (803)
Q Consensus 418 ~~~-----------~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (803)
+++ +....++.+.+++..+.+.... ....+-.+.-+.|+... .-.-.+...++.....+|
T Consensus 369 ~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~--~~ee~~~~~s~~cP~~c-------~c~~tVvRcSnk~lk~lp 439 (498)
T KOG4237|consen 369 EWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG--GPEELGCLTSSPCPPPC-------TCLDTVVRCSNKLLKLLP 439 (498)
T ss_pred HHHhhCCCCCCCCCCCCchhccccchhccccccccC--CccccCCCCCCCCCCCc-------chhhhhHhhcccchhhcC
Confidence 111 1222455555555544432111 00011111111111000 000111223333344444
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccch-hhhcccccCccccccc
Q 003683 487 PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDC 551 (803)
Q Consensus 487 ~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 551 (803)
..+. ..-.+|++.+|.++ .+|.. .+.+| .+++++|++..+.. .+.++++|.+|.|+.|
T Consensus 440 ~~iP--~d~telyl~gn~~~--~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAIT--SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhc--ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4332 34568899999985 57776 67788 89999999997765 5788888888888764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=2.2e-16 Score=169.62 Aligned_cols=259 Identities=23% Similarity=0.258 Sum_probs=139.6
Q ss_pred ccCCCCcCcEEEccCcccc-----ccchhhhhcCCCCEEecCCCCCC------CCCCccCcCCCCCcEEEecCCCCCccC
Q 003683 277 VVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNL------SSLPVAISSFQCLRNLKLSGCSKLKKF 345 (803)
Q Consensus 277 ~l~~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l------~~lp~~l~~l~~L~~L~Ls~~~~~~~~ 345 (803)
.+..+.+|+.|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3344444555555555542 34444555555666665554322 112223444556666666666655444
Q ss_pred ccccccccc---ccccccCccccc-----ccCcccCCC-CCCCEEecCCCCCCcc----ccccccCCCCCCEEEecCCCC
Q 003683 346 PQIVTTMED---LSELNLDGTSIT-----EVPSSIELL-PGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCK 412 (803)
Q Consensus 346 ~~~~~~l~~---L~~L~L~~~~l~-----~l~~~l~~l-~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~c~~ 412 (803)
+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|..
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 443333333 666666666555 122334455 6777777777766532 333455566777777777665
Q ss_pred CC----cCCcccCCCCCCcEEecCCCcccC-----CCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhh
Q 003683 413 LE----NVPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA 483 (803)
Q Consensus 413 ~~----~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (803)
.. .++..+...++|+.|++++|.+.. +...+..+++|++|++++|..... .. .....
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-~~-------------~~l~~ 243 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-GA-------------AALAS 243 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-HH-------------HHHHH
Confidence 43 122334445677777777776652 223344566777777777652110 00 00000
Q ss_pred ccCCCCCCCCCCCEEeCCCCCCCCCC---CCCCCCCCCCCCEEecCCCCCcc-----cchhhhcc-cccCcccccccc
Q 003683 484 LMLPSLSGLRSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYLSKNNFVT-----LPASINSL-LNLKELEMEDCK 552 (803)
Q Consensus 484 ~~~~~l~~l~~L~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~~l-~~L~~L~L~~c~ 552 (803)
.. ....+.|+.|++++|.+++.. +...+..+++|+++++++|.+.. +...+... +.|+.|++.+++
T Consensus 244 ~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 244 AL---LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HH---hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 00 013467888888888775321 23345556788888888888772 33344445 677888777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-15 Score=137.29 Aligned_cols=165 Identities=32% Similarity=0.580 Sum_probs=98.2
Q ss_pred ccccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecC
Q 003683 353 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 432 (803)
Q Consensus 353 ~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~ 432 (803)
.+++.|.|++|.++.+|+.+..+.+|+.|++.+|. ...+|.++..+++|+.|++.- +.+..+|..||.+|.|+.|++.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence 33444444555555555555555555555555443 233444455555555555543 2344456666666666666666
Q ss_pred CCccc--CCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCC
Q 003683 433 ETAVR--RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 510 (803)
Q Consensus 433 ~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~ 510 (803)
.|++. .+|..++.+..|+.|+++.| .+ +.+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dn----------------------------------------------df--e~l 142 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDN----------------------------------------------DF--EIL 142 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCC----------------------------------------------Cc--ccC
Confidence 66554 35555555555555555544 33 457
Q ss_pred CCCCCCCCCCCEEecCCCCCcccchhhhcccccCccccccccccCcCCCCCCCceEEEecC
Q 003683 511 PSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 571 (803)
Q Consensus 511 ~~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~ 571 (803)
|..++.+++|+.|.+.+|.+.++|..++.+++|+.|.+.+|+ ++. +|+-|..+++.+
T Consensus 143 p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~v---lppel~~l~l~~ 199 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTV---LPPELANLDLVG 199 (264)
T ss_pred ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eee---cChhhhhhhhhh
Confidence 777888888888888888888888888888888888888876 443 455555555433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.7e-15 Score=136.01 Aligned_cols=169 Identities=22% Similarity=0.308 Sum_probs=96.6
Q ss_pred CCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCc
Q 003683 174 SLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNK 253 (803)
Q Consensus 174 ~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~ 253 (803)
.+|.-|.+.+.+.|-|++|++..+|..+..|.+|++|++++|++...++.++++++|++|+++-| .+...|.++|.+.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p- 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP- 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc-
Confidence 34445566666666666666666666666666666666666665555556666666666666543 3444444443322
Q ss_pred ccccCCccEEEecCCCCC-CCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCc
Q 003683 254 LIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLR 332 (803)
Q Consensus 254 L~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 332 (803)
.|+.||+++|.+. ..+|..+..|+.|+.|+++.|.++-+|..++++++|+.|.+.+|. +
T Consensus 103 -----~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-l-------------- 162 (264)
T KOG0617|consen 103 -----ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-L-------------- 162 (264)
T ss_pred -----hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-h--------------
Confidence 2222444444332 234555555666666666666666666666665555555555532 2
Q ss_pred EEEecCCCCCccCcccccccccccccccCcccccccCcccCC
Q 003683 333 NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 374 (803)
Q Consensus 333 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~ 374 (803)
-.+|..++.+..|++|++.+|.++-+|+.+++
T Consensus 163 ----------l~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 163 ----------LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ----------hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 23455556666667777777777666655443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=6.6e-15 Score=158.10 Aligned_cols=271 Identities=21% Similarity=0.151 Sum_probs=129.9
Q ss_pred EEecCCCCC--CCCCCC-CCCCeeEEEeCCCCch-----hccccccCCCCccEEEecCCCCCCC-------CCCCCCCCC
Q 003683 165 LDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSENLIK-------TPDFTEAPN 229 (803)
Q Consensus 165 L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~-----~l~~~~~~L~~L~~L~L~~~~~~~~-------~~~l~~l~~ 229 (803)
|++.++.+. ..+..+ .+.+|++|+++++.+. .++..+...++|+.++++++..... ...+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555442 233333 5566777777777763 3555666677777777777654310 012444556
Q ss_pred ccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhc-CCCC
Q 003683 230 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHL-FGLV 308 (803)
Q Consensus 230 L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l-~~L~ 308 (803)
|++|++++|......+..+..+.. . ++|++|++++|........ .+...+..+ ++|+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~--~-~~L~~L~ls~~~~~~~~~~-------------------~l~~~l~~~~~~L~ 140 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLR--S-SSLQELKLNNNGLGDRGLR-------------------LLAKGLKDLPPALE 140 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhc--c-CcccEEEeeCCccchHHHH-------------------HHHHHHHhCCCCce
Confidence 666666655332222222222211 1 3345555555543321000 122223333 4444
Q ss_pred EEecCCCCCCC----CCCccCcCCCCCcEEEecCCCCCcc----CcccccccccccccccCccccc-----ccCcccCCC
Q 003683 309 QLTLNDCKNLS----SLPVAISSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSIT-----EVPSSIELL 375 (803)
Q Consensus 309 ~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~-----~l~~~l~~l 375 (803)
.|++++|.... .++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+. .+...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 45554443221 1222233344555555555544321 2222333345555555555554 223345556
Q ss_pred CCCCEEecCCCCCCcccccccc-----CCCCCCEEEecCCCCCC----cCCcccCCCCCCcEEecCCCcccCCC-----c
Q 003683 376 PGLELLNLNDCKNFARVPSSIN-----GLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRPP-----S 441 (803)
Q Consensus 376 ~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~c~~~~----~~~~~~~~l~~L~~L~L~~~~i~~lp-----~ 441 (803)
++|++|++++|.+.......+. ..+.|+.|++++|.... .+...+..+++|+.+++++|.+..-+ .
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 6677777776665432111111 23667777777765542 22334445567777777777766332 1
Q ss_pred hhhhh-ccCceEeccCC
Q 003683 442 SVFLM-KNLRTLSFSGC 457 (803)
Q Consensus 442 ~~~~l-~~L~~L~L~~~ 457 (803)
.+... +.|++|++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 301 SLLEPGNELESLWVKDD 317 (319)
T ss_pred HHhhcCCchhhcccCCC
Confidence 22223 56666666554
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-12 Score=153.91 Aligned_cols=85 Identities=33% Similarity=0.449 Sum_probs=71.3
Q ss_pred ccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEE
Q 003683 256 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 335 (803)
Q Consensus 256 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 335 (803)
.++.|++||+++|...+.+|..++++-+|++|+++++.+..+|.++.++..|.+|++..+..+..+|.....+++|++|.
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 35666667777777777778888888889999999999999999999999999999999888888877677799999999
Q ss_pred ecCCC
Q 003683 336 LSGCS 340 (803)
Q Consensus 336 Ls~~~ 340 (803)
+....
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 87643
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-10 Score=120.58 Aligned_cols=210 Identities=23% Similarity=0.224 Sum_probs=108.2
Q ss_pred hhhhhcCCCCEEecCCCCCCCCCC--ccCcCCCCCcEEEecCCCCCc--cCcccccccccccccccCcccccccCcccCC
Q 003683 299 LSIEHLFGLVQLTLNDCKNLSSLP--VAISSFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIEL 374 (803)
Q Consensus 299 ~~l~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~ 374 (803)
..-.++.+|+.+.|.++. ....+ .....|++++.|+|++|-+.. .+......+|+|+.|+++.|.+....++.
T Consensus 115 akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-- 191 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-- 191 (505)
T ss_pred HHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--
Confidence 334456667777766542 33333 134446666666666653322 12233345555555555555544222110
Q ss_pred CCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCc-CCcccCCCCCCcEEecCCCc-ccCCCchhhhhccCceE
Q 003683 375 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN-VPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTL 452 (803)
Q Consensus 375 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~-~~~~~~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L 452 (803)
.-..++.|+.|.+++|..... +...+..+|+|+.|++..|. +..-.....-+..|+.|
T Consensus 192 --------------------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 192 --------------------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred --------------------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 011334444444444443321 11122334455555555442 11111122224555555
Q ss_pred eccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCC-----CCCCCCCCEEecCC
Q 003683 453 SFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-----IGNLHSLNELYLSK 527 (803)
Q Consensus 453 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~-----l~~l~~L~~L~Ls~ 527 (803)
+|++|...... .....+.++.|..|.++.|.+.+-..|+. ...+++|++|+++.
T Consensus 252 dLs~N~li~~~---------------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 252 DLSNNNLIDFD---------------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred cccCCcccccc---------------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 55555422211 02335566777777777777765555554 46688999999999
Q ss_pred CCCcccch--hhhcccccCcccccccc
Q 003683 528 NNFVTLPA--SINSLLNLKELEMEDCK 552 (803)
Q Consensus 528 n~l~~lp~--~i~~l~~L~~L~L~~c~ 552 (803)
|++...++ .+..+++|+.|.+..++
T Consensus 311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 311 NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred Cccccccccchhhccchhhhhhccccc
Confidence 98876653 56777888888876654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=2e-09 Score=119.07 Aligned_cols=196 Identities=32% Similarity=0.462 Sum_probs=140.8
Q ss_pred EEEecCCCCCccCcccccccccccccccCcccccccCcccCCCC-CCCEEecCCCCCCccccccccCCCCCCEEEecCCC
Q 003683 333 NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLP-GLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 411 (803)
Q Consensus 333 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~-~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~ 411 (803)
.++...+...... ..+..++.+..|.+.++.+++++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4555554432222 222334667777888888888877777774 8888888877643 344556778888888888865
Q ss_pred CCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCC
Q 003683 412 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 491 (803)
Q Consensus 412 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 491 (803)
.. .+|...+..++|+.|++++|.+..+|..+..+..|++|.+++|..... +..+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----------------------~~~~~~ 230 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-----------------------LSSLSN 230 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-----------------------chhhhh
Confidence 43 445545577889999999999999988877777899999988852211 445667
Q ss_pred CCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccchhhhcccccCccccccccccCcC
Q 003683 492 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 557 (803)
Q Consensus 492 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 557 (803)
+.++..+.+.+|++. .++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+
T Consensus 231 ~~~l~~l~l~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 231 LKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccccccCCceee--eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 778888888888874 347778888889999999999998886 888889999999888755443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.8e-10 Score=117.57 Aligned_cols=214 Identities=19% Similarity=0.229 Sum_probs=125.7
Q ss_pred ccCCCCcCcEEEccCccccccch--hhhhcCCCCEEecCCCCCCCC--CCccCcCCCCCcEEEecCCCCCccCcc-cccc
Q 003683 277 VVGSMECLQELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGCSKLKKFPQ-IVTT 351 (803)
Q Consensus 277 ~l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~~~~-~~~~ 351 (803)
--.++.+|+...|.++.+...+. -...+++++.|+|+.|-.... +-.....+|+|+.|+++.|.+...... .-..
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 34567899999999999987764 688899999999998643322 223356799999999999876533221 1224
Q ss_pred cccccccccCccccc--ccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcC-CcccCCCCCCcE
Q 003683 352 MEDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV-PDTLGQVESLEE 428 (803)
Q Consensus 352 l~~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~-~~~~~~l~~L~~ 428 (803)
+++|+.|.|+.|.++ ++...+..+|+|+.|++..|.....-......+..|+.|+|++|+....- ....+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 566777777777666 33344455666666666665432222222333445555555554443321 122344444555
Q ss_pred EecCCCcccCC--CchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCC
Q 003683 429 LDISETAVRRP--PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 506 (803)
Q Consensus 429 L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 506 (803)
|+++.|.+.++ |+. ....-...+++|+.|+++.|++.
T Consensus 276 Lnls~tgi~si~~~d~-----------------------------------------~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDV-----------------------------------------ESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCc-----------------------------------------cchhhhcccccceeeecccCccc
Confidence 55544444422 110 00111345677778888877775
Q ss_pred CCCCCCCCCCCCCCCEEecCCCCCc
Q 003683 507 EGAIPSDIGNLHSLNELYLSKNNFV 531 (803)
Q Consensus 507 ~~~~~~~l~~l~~L~~L~Ls~n~l~ 531 (803)
+-..-..+..+++|+.|.+.+|.+.
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhccchhhhhhccccccc
Confidence 4333344556677777777776665
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.5e-09 Score=118.35 Aligned_cols=181 Identities=25% Similarity=0.348 Sum_probs=90.1
Q ss_pred CCCCeeEEEeCCCCchhccccccCCC-CccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccccC
Q 003683 180 QLDKIVEFKMCYSRIEELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 258 (803)
Q Consensus 180 ~l~~L~~L~L~~~~i~~l~~~~~~L~-~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~ 258 (803)
....+..|++.++.+.+++.....+. +|+.|+++++........+..+++|+.|++++| .+..++...
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~---------- 182 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLL---------- 182 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhh----------
Confidence 33445555555555555544444442 455555555443332233444444444444443 232222211
Q ss_pred CccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecC
Q 003683 259 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 338 (803)
Q Consensus 259 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 338 (803)
+..++|+.|++++|.+..+|..+.....|++|.++++. ....+..+..+.++..+.+.+
T Consensus 183 --------------------~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 183 --------------------SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred --------------------hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC
Confidence 13344444455555555555444444455555555543 222233344455555555444
Q ss_pred CCCCccCcccccccccccccccCcccccccCcccCCCCCCCEEecCCCCCCccccc
Q 003683 339 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS 394 (803)
Q Consensus 339 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~ 394 (803)
+.. ..++..++.+++++.|++++|.+..++. ++.+.+|+.|+++++......+.
T Consensus 242 n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 242 NKL-EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cee-eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 322 2224555666667777777777776666 66667777777777666555444
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=5e-11 Score=126.67 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=132.3
Q ss_pred CcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCC
Q 003683 331 LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 410 (803)
Q Consensus 331 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c 410 (803)
-...+++.|. ...+|.....+..|+.+.+..|.+..+|..+.++..|+.|+|+.|.+ ..+|..++.++ |+.|-+++
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN- 152 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN- 152 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec-
Confidence 3445666653 45677777888888999999999999999999999999999988764 45566666655 77777776
Q ss_pred CCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCC
Q 003683 411 CKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS 490 (803)
Q Consensus 411 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (803)
++++.+|+.++..+.|..|+.+.|.+..+|+.++.+.+|+.|.++.|.... .|+.+.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-----------------------lp~El~ 209 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-----------------------LPEELC 209 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-----------------------CCHHHh
Confidence 456778888887788888888888888888888888888888877766221 133333
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccchhh---hcccccCccccccc
Q 003683 491 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI---NSLLNLKELEMEDC 551 (803)
Q Consensus 491 ~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c 551 (803)
.| .|..||+|.|+++ .+|-.+..++.|++|-|.+|.+.+-|+.| +...--++|+..-|
T Consensus 210 ~L-pLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CC-ceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 22 3566666666663 46666666666666666666666655544 23334455666555
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=7.6e-10 Score=108.63 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=83.3
Q ss_pred ccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCccccccccccc
Q 003683 396 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLM 475 (803)
Q Consensus 396 ~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 475 (803)
+.....|+++++++|.+ ..+.+++.-.|.++.|+++.|.+..+.. +..+++|+.|+|++|....
T Consensus 280 ~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-------------- 343 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-------------- 343 (490)
T ss_pred cchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh--------------
Confidence 33455667777777543 3455556666777777777777776654 6667777777777765111
Q ss_pred CCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccch--hhhcccccCcccccccc
Q 003683 476 GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 552 (803)
Q Consensus 476 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 552 (803)
+..+-..+-+.+.|.|+.|.+. .-..++.+-+|..||+++|++..+.+ .|+++|.|+.|.|.+||
T Consensus 344 ---------~~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 344 ---------CVGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---------hhhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 0111224556777777777663 22345667778888888888875543 68888888888888887
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=2.9e-10 Score=114.45 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=125.3
Q ss_pred CCCcCcEEEccCcccc-----ccchhhhhcCCCCEEecCCCCCCC----CCC-------ccCcCCCCCcEEEecCCCCCc
Q 003683 280 SMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLS----SLP-------VAISSFQCLRNLKLSGCSKLK 343 (803)
Q Consensus 280 ~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l~----~lp-------~~l~~l~~L~~L~Ls~~~~~~ 343 (803)
.+..++++++++|.+. .+...+.+.++|+..++++- ..+ .+| ..+..++.|++|+||+|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3444555555555543 23334444555555555542 111 122 123345566666666665544
Q ss_pred cCc----ccccccccccccccCcccccccC--------------cccCCCCCCCEEecCCCCCCccccccccCCCCCCEE
Q 003683 344 KFP----QIVTTMEDLSELNLDGTSITEVP--------------SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 405 (803)
Q Consensus 344 ~~~----~~~~~l~~L~~L~L~~~~l~~l~--------------~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 405 (803)
..+ +.+.....|++|.|.+|.+...- ...+.-+.|+++...+|+.-..-.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga------------ 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA------------ 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH------------
Confidence 333 23344556666666666554111 112334445555554443321100
Q ss_pred EecCCCCCCcCCcccCCCCCCcEEecCCCcccC-----CCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcch
Q 003683 406 NLSGCCKLENVPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC 480 (803)
Q Consensus 406 ~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (803)
..+...+...+.|+.+.+..|.|.. +...+.++++|+.|+|+.|.....
T Consensus 175 --------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e------------------ 228 (382)
T KOG1909|consen 175 --------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE------------------ 228 (382)
T ss_pred --------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH------------------
Confidence 0112233444555555555555441 123455567777777776652111
Q ss_pred hhhccCCCCCCCCCCCEEeCCCCCCCCCCCCC---C-CCCCCCCCEEecCCCCCc-----ccchhhhcccccCccccccc
Q 003683 481 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS---D-IGNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDC 551 (803)
Q Consensus 481 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~---~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c 551 (803)
....+...+..+++|++|++++|.+....... . -...|+|+.|.+.+|.++ .+-.++...+.|+.|+|++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 01112334667788999999999876433221 1 234789999999999988 45567788999999999999
Q ss_pred c
Q 003683 552 K 552 (803)
Q Consensus 552 ~ 552 (803)
.
T Consensus 309 ~ 309 (382)
T KOG1909|consen 309 R 309 (382)
T ss_pred c
Confidence 7
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=7.3e-10 Score=108.76 Aligned_cols=133 Identities=29% Similarity=0.361 Sum_probs=95.1
Q ss_pred ccccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecC
Q 003683 353 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 432 (803)
Q Consensus 353 ~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~ 432 (803)
..|++++|++|.|+.+..+..-.|.++.|+++.|.+... ..+..+++|+.|+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecc
Confidence 457777777777777777777777777777776654322 113445666777777
Q ss_pred CCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCC
Q 003683 433 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 512 (803)
Q Consensus 433 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~ 512 (803)
+|.++++..+-..+.+.++|.|++|.... ...++.+.+|..||+++|++.+-.--.
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~------------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIET------------------------LSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHhh------------------------hhhhHhhhhheeccccccchhhHHHhc
Confidence 77777666666677788888887765211 344667789999999999985444456
Q ss_pred CCCCCCCCCEEecCCCCCcccch
Q 003683 513 DIGNLHSLNELYLSKNNFVTLPA 535 (803)
Q Consensus 513 ~l~~l~~L~~L~Ls~n~l~~lp~ 535 (803)
.++++|.|+.+.|.+|.+..+|+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccccccHHHHHhhcCCCccccch
Confidence 78999999999999999987775
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=4.6e-10 Score=113.08 Aligned_cols=187 Identities=27% Similarity=0.311 Sum_probs=100.3
Q ss_pred ccCCCCccEEEecCCCCCCC-CCC----CCCCCCccEEeccCCccccccCcc--------ccccCcccccCCccEEEecC
Q 003683 201 IKHLNMLKVMKLSHSENLIK-TPD----FTEAPNLEELYLEGCTKLRKVHPS--------LLLHNKLIFVESLKILILSG 267 (803)
Q Consensus 201 ~~~L~~L~~L~L~~~~~~~~-~~~----l~~l~~L~~L~L~~~~~l~~i~~~--------~~~l~~L~~l~~L~~L~l~~ 267 (803)
+...++|++||||+|-+... ++. ++++..|++|.|.+| .+...... +...++...-+.|+++....
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 33444555555555543322 221 445666666666665 22211100 11223344456777788877
Q ss_pred CCCCCC----CCcccCCCCcCcEEEccCcccc-----ccchhhhhcCCCCEEecCCCCCCCC----CCccCcCCCCCcEE
Q 003683 268 CLKLRK----FPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNL 334 (803)
Q Consensus 268 ~~~~~~----~~~~l~~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L 334 (803)
|+.... +...+...+.|+.+.+..|.|. .+...+.++++|+.|+|.+|..... +...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 765432 3345666678888888887765 3445677788888888887765432 22334556777777
Q ss_pred EecCCCCCccCcccc-----cccccccccccCcccccc-----cCcccCCCCCCCEEecCCCCC
Q 003683 335 KLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKN 388 (803)
Q Consensus 335 ~Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~~~~ 388 (803)
++++|.....-...+ ...|+|++|.+.+|.|+. +-..+...+.|+.|+|++|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777776554322211 234556666666655541 112223344455555555443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=1.3e-08 Score=96.51 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=8.8
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCC
Q 003683 161 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE 216 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~ 216 (803)
++|.|+++|+.+..+..-. .+.+|+.|+|++|.|+++. ++..+++|++|++++|.
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC
Confidence 3444444444444443222 3444444444444444442 34444444444444444
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=1.5e-09 Score=115.65 Aligned_cols=189 Identities=25% Similarity=0.331 Sum_probs=158.2
Q ss_pred cccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCC
Q 003683 354 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 433 (803)
Q Consensus 354 ~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~ 433 (803)
--...+++.|.+.++|..+..+..|+.+.+..|. ...+|..++++..|..|+++.|. +..+|..+..++ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec
Confidence 3456788999999999988888899999888765 45678889999999999999865 456777777665 89999999
Q ss_pred CcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCC
Q 003683 434 TAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 513 (803)
Q Consensus 434 ~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~ 513 (803)
|+++.+|..++..+.|..|+.+.|.. ..+|..++++.+|+.|.++.|++. .+|..
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei-----------------------~slpsql~~l~slr~l~vrRn~l~--~lp~E 207 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEI-----------------------QSLPSQLGYLTSLRDLNVRRNHLE--DLPEE 207 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhh-----------------------hhchHHhhhHHHHHHHHHhhhhhh--hCCHH
Confidence 99999999999999999999998873 233777889999999999999984 58888
Q ss_pred CCCCCCCCEEecCCCCCcccchhhhcccccCccccccccccCcCCC------CCCCceEEEecCC
Q 003683 514 IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQ------LPPNIIFVKVNGC 572 (803)
Q Consensus 514 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~~~~C 572 (803)
+.. -.|..||+|.|++..||.++..+..|++|-|.+|+ |++-|. .-.-.++|++.-|
T Consensus 208 l~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 208 LCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 884 46899999999999999999999999999999998 777652 1123477777777
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=6.4e-09 Score=98.66 Aligned_cols=134 Identities=22% Similarity=0.197 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCeeEEEeCCCCchhcccccc-CCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccc
Q 003683 173 KSLPSNLQLDKIVEFKMCYSRIEELWKGIK-HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH 251 (803)
Q Consensus 173 ~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~-~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l 251 (803)
+..|...++.++++|+|+++.|+.+. .++ .+.+|+.|++++|.+. .++.+..+++|++|++++| .++.+...+.
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~-- 84 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNN-RISSISEGLD-- 84 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHH--
T ss_pred cccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCC-CCCccccchH--
Confidence 34444445556666666666666653 343 4566666666666533 3455666666666666665 3443322111
Q ss_pred CcccccCCccEEEecCCCCCCC-CCcccCCCCcCcEEEccCccccccch----hhhhcCCCCEEecCC
Q 003683 252 NKLIFVESLKILILSGCLKLRK-FPHVVGSMECLQELLLDGTDIKELPL----SIEHLFGLVQLTLND 314 (803)
Q Consensus 252 ~~L~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~i~~lp~----~l~~l~~L~~L~L~~ 314 (803)
..+++|+.|++++|.+... .-..+..+++|+.|++.+|.+..-+. .+..+++|+.||-..
T Consensus 85 ---~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 ---KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ---HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ---HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 1245566666666655432 12345556666677776666654332 366677777777544
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=1.1e-08 Score=105.60 Aligned_cols=229 Identities=24% Similarity=0.313 Sum_probs=105.2
Q ss_pred CccEEEecCCCCCCCCC--C-CCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCC
Q 003683 206 MLKVMKLSHSENLIKTP--D-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 282 (803)
Q Consensus 206 ~L~~L~L~~~~~~~~~~--~-l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 282 (803)
.|+.|.++++.....-+ . ...++++++|.+.+|..+++. +..++ -+++++|+++++..|...+..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~--s~~sl--a~~C~~l~~l~L~~c~~iT~~-------- 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS--SLLSL--ARYCRKLRHLNLHSCSSITDV-------- 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH--HHHHH--HHhcchhhhhhhcccchhHHH--------
Confidence 45666666665433322 1 346777777777777654431 11111 122444444555443221110
Q ss_pred cCcEEEccCccccccchhhhhcCCCCEEecCCCCCCCC--CCccCcCCCCCcEEEecCCCCCcc--Cccccccccccccc
Q 003683 283 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSEL 358 (803)
Q Consensus 283 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L 358 (803)
.+..-...+++|++|+++.|..+.. +-....++..++.+.+.||.-.+. +...-+....+.++
T Consensus 207 -------------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 207 -------------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred -------------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 0001122345555566666554433 111133344555665556543221 11111233334444
Q ss_pred ccCccc-ccc--cCcccCCCCCCCEEecCCCCCCccccc--cccCCCCCCEEEecCCCCCCcCCc--ccCCCCCCcEEec
Q 003683 359 NLDGTS-ITE--VPSSIELLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSGCCKLENVPD--TLGQVESLEELDI 431 (803)
Q Consensus 359 ~L~~~~-l~~--l~~~l~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~L~L~~c~~~~~~~~--~~~~l~~L~~L~L 431 (803)
++..+. ++. +...-..+..|+.|..++|...+..+- -..+.++|+.|-+.+|...+.... .-.+.+.|+.+++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 444432 221 111224456677777777766444322 124567777777777765443211 1124456666666
Q ss_pred CCCcccC---CCchhhhhccCceEeccCCCC
Q 003683 432 SETAVRR---PPSSVFLMKNLRTLSFSGCNG 459 (803)
Q Consensus 432 ~~~~i~~---lp~~~~~l~~L~~L~L~~~~~ 459 (803)
.++.... +-..-.+++.|+.|.++.|..
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhh
Confidence 6654331 222223355566666665553
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.2e-06 Score=93.24 Aligned_cols=61 Identities=23% Similarity=0.511 Sum_probs=33.1
Q ss_pred cccccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCC
Q 003683 352 MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 417 (803)
Q Consensus 352 l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~ 417 (803)
+.+++.|++++|.++.+|. ..++|+.|.+.+|..+..+|..+ .++|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4556666666666666651 22346666666665555555433 2355666666554444443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=6.5e-07 Score=103.95 Aligned_cols=112 Identities=29% Similarity=0.490 Sum_probs=85.0
Q ss_pred CcEEecCCCccc-CCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCC
Q 003683 426 LEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG 504 (803)
Q Consensus 426 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 504 (803)
++.|+|++|.+. .+|..+..+++|+.|+|++|. +.+.+|..++.+++|+.|+|++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~----------------------l~g~iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS----------------------IRGNIPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc----------------------ccCcCChHHhCCCCCCEEECCCCC
Confidence 667777777776 466677777778888777765 223346667888888899999988
Q ss_pred CCCCCCCCCCCCCCCCCEEecCCCCCc-ccchhhhcc-cccCccccccccccCcCCCC
Q 003683 505 LGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSL-LNLKELEMEDCKRLQFLPQL 560 (803)
Q Consensus 505 l~~~~~~~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~lp~l 560 (803)
+. +.+|..++.+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+...|.+
T Consensus 478 ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 478 FN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 86 678888899999999999999888 788877653 46778888888776655543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=9.2e-08 Score=106.08 Aligned_cols=192 Identities=22% Similarity=0.260 Sum_probs=93.1
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCc
Q 003683 161 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 239 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 239 (803)
.++.+.+..+.+..+-... .+.+|+.|++.+|.|+++...+..+++|++|++++|.+ ..+..+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccccchhhccchhhheeccCc
Confidence 3444444444444422222 55666666666666665544455566666666666542 333445555555555555541
Q ss_pred cccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchh-hhhcCCCCEEecCCCCCC
Q 003683 240 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNL 318 (803)
Q Consensus 240 ~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l 318 (803)
+.. ...+.. +..|+.+++++|.+..+... ...+.+++.+.+.++...
T Consensus 152 -i~~-------~~~~~~------------------------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 152 -ISD-------ISGLES------------------------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred -chh-------ccCCcc------------------------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 221 122222 44444444444444443332 344445555555543321
Q ss_pred CCCCccCcCCCCCcEEEecCCCCCccCcccccccc--cccccccCcccccccCcccCCCCCCCEEecCCCCCC
Q 003683 319 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTME--DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF 389 (803)
Q Consensus 319 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~--~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~ 389 (803)
..- .+..+..+..+++..+.+...-+ +..+. .|+.+++.++.+..++..+..+..+..|++.+++..
T Consensus 200 ~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 200 EIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 111 12222233333444433322211 11111 377788888888777666777777777777776543
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6e-09 Score=102.52 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=68.8
Q ss_pred cccccccCccccc--ccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCc--ccCCCCCCcEE
Q 003683 354 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD--TLGQVESLEEL 429 (803)
Q Consensus 354 ~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~--~~~~l~~L~~L 429 (803)
.|+.|+|++..|+ .+...+..+.+|+.|.|.+++....+...+..-.+|+.|+++.|+..+.... .+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777766 4445567788888888888877777777777888888888888877664332 24566677777
Q ss_pred ecCCCcccC--CCchhhh-hccCceEeccCCC
Q 003683 430 DISETAVRR--PPSSVFL-MKNLRTLSFSGCN 458 (803)
Q Consensus 430 ~L~~~~i~~--lp~~~~~-l~~L~~L~L~~~~ 458 (803)
+|+.|.+.. +...+.+ -++|+.|+|+||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 777776542 1111111 3556666666655
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.2e-06 Score=101.85 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=96.7
Q ss_pred CCcEEEecCCCCCccCcccccccccccccccCccccc-ccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEec
Q 003683 330 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 408 (803)
Q Consensus 330 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~ 408 (803)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999999999999999999999999998 788889999999999999999999999999999999999999
Q ss_pred CCCCCCcCCcccCCC-CCCcEEecCCCccc
Q 003683 409 GCCKLENVPDTLGQV-ESLEELDISETAVR 437 (803)
Q Consensus 409 ~c~~~~~~~~~~~~l-~~L~~L~L~~~~i~ 437 (803)
+|...+.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999887654 46778888888643
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=3.3e-07 Score=101.63 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=92.7
Q ss_pred hcCCCcceEEecCccccCccc--cCCCCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEe
Q 003683 136 SLMTNLGLLKINNVQLLEGLE--YLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 212 (803)
Q Consensus 136 ~~~~~Lr~L~l~~~~l~~~~~--~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L 212 (803)
..+..++.+.+..|.+..... ....+|.+|++.++.+..+.... .+.+|++|++++|.|+++ .++..++.|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhhee
Confidence 345666666677777765332 22368999999999999999844 899999999999999988 56778888999999
Q ss_pred cCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEEEecCCCC
Q 003683 213 SHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK 270 (803)
Q Consensus 213 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~ 270 (803)
++|. ...++.+..+++|+.+++++|. +..+... . +..+.+|+.+.+.+|.+
T Consensus 148 ~~N~-i~~~~~~~~l~~L~~l~l~~n~-i~~ie~~----~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNL-ISDISGLESLKSLKLLDLSYNR-IVDIEND----E-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCc-chhccCCccchhhhcccCCcch-hhhhhhh----h-hhhccchHHHhccCCch
Confidence 9996 4566778889999999999973 4433321 0 23344455555555543
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=7.7e-06 Score=87.18 Aligned_cols=160 Identities=20% Similarity=0.353 Sum_probs=88.4
Q ss_pred cCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCC-cccCCCchhhhhccCc
Q 003683 372 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLR 450 (803)
Q Consensus 372 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~-~i~~lp~~~~~l~~L~ 450 (803)
+..+.+++.|++++| .+..+|. -.++|+.|.+++|..+..+|+.+ .++|+.|++++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 344567777777777 3444452 12357777777777777776644 246777777776 5555553 455
Q ss_pred eEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCC-CCCCEEeCCCCC-CCCCCCCCCCCCCCCCCEEecCCC
Q 003683 451 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RSLTKLDLSDCG-LGEGAIPSDIGNLHSLNELYLSKN 528 (803)
Q Consensus 451 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~~~-l~~~~~~~~l~~l~~L~~L~Ls~n 528 (803)
.|++.++... .+..+ ++|+.|.+.+++ .....+|.. -.++|++|++++|
T Consensus 116 ~L~L~~n~~~---------------------------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c 166 (426)
T PRK15386 116 SLEIKGSATD---------------------------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC 166 (426)
T ss_pred eEEeCCCCCc---------------------------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCC
Confidence 5665533210 01112 245566664332 111111111 1256778888777
Q ss_pred CCcccchhhhcccccCcccccccc--ccC-cCCCCCCCceEEEecCCccc
Q 003683 529 NFVTLPASINSLLNLKELEMEDCK--RLQ-FLPQLPPNIIFVKVNGCSSL 575 (803)
Q Consensus 529 ~l~~lp~~i~~l~~L~~L~L~~c~--~L~-~lp~lp~sL~~L~~~~C~~L 575 (803)
....+|..+. .+|+.|+++.+. .+. ..+.+|+++ .|.+.+|-.|
T Consensus 167 ~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 167 SNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred CcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 7666554433 477777776643 111 122567777 7888887554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=7.8e-07 Score=87.94 Aligned_cols=232 Identities=20% Similarity=0.199 Sum_probs=149.9
Q ss_pred CCCCcEEEecCCCCCcc--CcccccccccccccccCccccc---ccCcccCCCCCCCEEecCCCCCCccccccccCCCCC
Q 003683 328 FQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 402 (803)
Q Consensus 328 l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~l~---~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 402 (803)
+..++.|.+.+|.+-.. ....-...+.+++++|.+|.|. ++...+.++|.|+.|+|+.|.....+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 44555666666654322 2222235677889999999887 445567899999999999887655443322345688
Q ss_pred CEEEecCCCCCC-cCCcccCCCCCCcEEecCCCcccCCCc---hhh-hhccCceEeccCCCCCCCCCcccccccccccCC
Q 003683 403 KTLNLSGCCKLE-NVPDTLGQVESLEELDISETAVRRPPS---SVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 477 (803)
Q Consensus 403 ~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~~~i~~lp~---~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 477 (803)
++|.+.|....- .....+..+|.+++|+++.|+...+-. ... .-+.+++|.+.+|......
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-------------- 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-------------- 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH--------------
Confidence 888887744322 223445677888888888886553311 111 1235566666665421110
Q ss_pred cchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccc--hhhhcccccCccccccccccC
Q 003683 478 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQ 555 (803)
Q Consensus 478 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 555 (803)
.....-.-+|++..+-+..|.+.+.........+|.+..|+|+.|++.+.. +.+..+++|..|.++++|...
T Consensus 190 ------~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 ------NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ------HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 001112346888889999998866556666777889999999999998554 478899999999999999777
Q ss_pred cCCCCCCCceEEEecCCccceeeccc
Q 003683 556 FLPQLPPNIIFVKVNGCSSLVTLLGA 581 (803)
Q Consensus 556 ~lp~lp~sL~~L~~~~C~~L~~l~~~ 581 (803)
.+.. .-=+.|-+...++++.+.++
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccC--CcceEEEEeeccceEEecCc
Confidence 6653 12244556677777777654
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.7e-06 Score=65.29 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=29.1
Q ss_pred CccEEEecCCCCCCCCCC-C-CCCCeeEEEeCCCCchhccc-cccCCCCccEEEecCC
Q 003683 161 KLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHS 215 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~-~~~~L~~L~~L~L~~~ 215 (803)
+|++|++++|.+..+|.. | .+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 455555555555555532 2 45555555555555555543 3455555555555554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.4e-07 Score=93.03 Aligned_cols=152 Identities=25% Similarity=0.329 Sum_probs=68.1
Q ss_pred ccEEEecCCCCCC-CCCcccCCCCcCcEEEccCcccc-ccchhhhhcCCCCEEecCCCCCCCCCCc--cCcCCCCCcEEE
Q 003683 260 LKILILSGCLKLR-KFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPV--AISSFQCLRNLK 335 (803)
Q Consensus 260 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~ 335 (803)
|++||++...++. .+...+..+.+|+.|.+.++.+. .+...+.+-.+|+.|+++.|..+..... .+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555544332 22233445555555555555554 3444455555555555555554443221 134455555555
Q ss_pred ecCCCCCccCc-cccc-ccccccccccCccccc----ccCcccCCCCCCCEEecCCCCCCcc-ccccccCCCCCCEEEec
Q 003683 336 LSGCSKLKKFP-QIVT-TMEDLSELNLDGTSIT----EVPSSIELLPGLELLNLNDCKNFAR-VPSSINGLKSLKTLNLS 408 (803)
Q Consensus 336 Ls~~~~~~~~~-~~~~-~l~~L~~L~L~~~~l~----~l~~~l~~l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~L~ 408 (803)
++.|......- ..+. --++|+.|+|+|+.-. .+..-...+|+|..|+|++|..+.. ....+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 55554433211 1111 1234555555544211 1212234455555555555543322 11223445555555555
Q ss_pred CCC
Q 003683 409 GCC 411 (803)
Q Consensus 409 ~c~ 411 (803)
.|.
T Consensus 347 RCY 349 (419)
T KOG2120|consen 347 RCY 349 (419)
T ss_pred hhc
Confidence 553
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=4.4e-06 Score=64.86 Aligned_cols=58 Identities=33% Similarity=0.530 Sum_probs=32.9
Q ss_pred ccccccccCcccccccCc-ccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCC
Q 003683 353 EDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 410 (803)
Q Consensus 353 ~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c 410 (803)
|+|++|++++|.+..+|. .+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 345666666666666553 4555666666666655555444445555555555555554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=1.3e-07 Score=97.83 Aligned_cols=134 Identities=20% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCCcEEEecCCCCCccCc--ccccccccccccccCccc-ccc--cCcccCCCCCCCEEecCCCCCCcc--ccccccCCC
Q 003683 328 FQCLRNLKLSGCSKLKKFP--QIVTTMEDLSELNLDGTS-ITE--VPSSIELLPGLELLNLNDCKNFAR--VPSSINGLK 400 (803)
Q Consensus 328 l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~L~~~~-l~~--l~~~l~~l~~L~~L~L~~~~~~~~--~p~~~~~l~ 400 (803)
+..|++|+.++|...+..+ ....+.++|+.|.+.+++ ++. +...-.+.+.|+.+++..|..... +...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455555555554433221 112234555555555543 221 111124556666666666544322 222234566
Q ss_pred CCCEEEecCCCCCCcC-----CcccCCCCCCcEEecCCCccc--CCCchhhhhccCceEeccCCCCCC
Q 003683 401 SLKTLNLSGCCKLENV-----PDTLGQVESLEELDISETAVR--RPPSSVFLMKNLRTLSFSGCNGPP 461 (803)
Q Consensus 401 ~L~~L~L~~c~~~~~~-----~~~~~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~ 461 (803)
.|+.|.++.|...... ...-..+..|+.+.++++... ..-..+..+++|+.+++.+|....
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 7777777766554432 223345566777777777654 233455567788888888777543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.3e-06 Score=84.76 Aligned_cols=203 Identities=17% Similarity=0.138 Sum_probs=102.9
Q ss_pred ccEEEecCCCCCCCCCC--C--CCCCeeEEEeCCCCchh---ccccccCCCCccEEEecCCCCCCCCCCC-CCCCCccEE
Q 003683 162 LRLLDWHRYPLKSLPSN--L--QLDKIVEFKMCYSRIEE---LWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEEL 233 (803)
Q Consensus 162 Lr~L~l~~~~l~~lp~~--~--~l~~L~~L~L~~~~i~~---l~~~~~~L~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L 233 (803)
+..|.+.++.+.+.... + ...+++.|||.+|.|.. +..-+.++|.|++|+|+.|.....+..+ ....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33555566655544322 2 67788888888888874 3334578889999999888776655554 356788888
Q ss_pred eccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCEEecC
Q 003683 234 YLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLN 313 (803)
Q Consensus 234 ~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 313 (803)
.|.|. .+.-- ..-..+..+|.++.|.++.|+ ++.+++..+.++..... ++.|...
T Consensus 127 VLNgT-~L~w~----~~~s~l~~lP~vtelHmS~N~--------------~rq~n~Dd~c~e~~s~~------v~tlh~~ 181 (418)
T KOG2982|consen 127 VLNGT-GLSWT----QSTSSLDDLPKVTELHMSDNS--------------LRQLNLDDNCIEDWSTE------VLTLHQL 181 (418)
T ss_pred EEcCC-CCChh----hhhhhhhcchhhhhhhhccch--------------hhhhccccccccccchh------hhhhhcC
Confidence 88762 22210 011122334555556665542 33334444433332211 1222222
Q ss_pred CCCCCCC--CCccCcCCCCCcEEEecCCCCCcc-CcccccccccccccccCcccccccC--cccCCCCCCCEEecCCCCC
Q 003683 314 DCKNLSS--LPVAISSFQCLRNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGTSITEVP--SSIELLPGLELLNLNDCKN 388 (803)
Q Consensus 314 ~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~l~--~~l~~l~~L~~L~L~~~~~ 388 (803)
.|..... .-.--.-+|++..+-+..|.+-.. -......++.+..|+|+.++|..+. +.+..+++|.-|.+.++.+
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 2211000 000011245555565555543322 1223344555556677766666443 2345556666666655554
Q ss_pred C
Q 003683 389 F 389 (803)
Q Consensus 389 ~ 389 (803)
.
T Consensus 262 ~ 262 (418)
T KOG2982|consen 262 S 262 (418)
T ss_pred c
Confidence 3
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=8.9e-08 Score=104.97 Aligned_cols=100 Identities=27% Similarity=0.312 Sum_probs=57.4
Q ss_pred cccccccCcccccccCcccCCCCCCCEEecCCCCCCccccccccCCCCCCEEEecCCCCCCcCCcc-cCCCCCCcEEecC
Q 003683 354 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDIS 432 (803)
Q Consensus 354 ~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~-~~~l~~L~~L~L~ 432 (803)
.|...+.+.|.+..+..+++-++.|+.|+|+.|++...- .+..++.|++|+|+.|... .+|.. ...+ .|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 345556666666666666666677777777766654332 4555666666666665432 22321 1122 37777777
Q ss_pred CCcccCCCchhhhhccCceEeccCCC
Q 003683 433 ETAVRRPPSSVFLMKNLRTLSFSGCN 458 (803)
Q Consensus 433 ~~~i~~lp~~~~~l~~L~~L~L~~~~ 458 (803)
+|.++++. .+.++++|+.|+++.|-
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhh
Confidence 77766553 34556666666666554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=4.7e-06 Score=81.48 Aligned_cols=221 Identities=19% Similarity=0.185 Sum_probs=112.5
Q ss_pred CCccccccchHHHHHHhhCcCCcceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCccccCccccCCCCccEEEec
Q 003683 89 GKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWH 168 (803)
Q Consensus 89 ~~~~~l~~~~di~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~~~~~Lr~L~l~ 168 (803)
|+...+-..+|+..|+..-.-.+.+..+.+++++-..+...+-.+.+.+-++|+..++++......-..++.+|+
T Consensus 8 gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~----- 82 (388)
T COG5238 8 GKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV----- 82 (388)
T ss_pred CceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----
Confidence 344444455566555554444556666666665111122223334455555566555554332222222222222
Q ss_pred CCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCC-----CCCCCCccEEeccCCccccc
Q 003683 169 RYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPD-----FTEAPNLEELYLEGCTKLRK 243 (803)
Q Consensus 169 ~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~-----l~~l~~L~~L~L~~~~~l~~ 243 (803)
-+-..+-++|+|+..+||.|-+....|. +++.+.|+||.+++| .+..
T Consensus 83 ---------------------------~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp 134 (388)
T COG5238 83 ---------------------------MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGP 134 (388)
T ss_pred ---------------------------HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCc
Confidence 1223445677777777777766554331 667788888888776 3332
Q ss_pred cCc--------cccccCcccccCCccEEEecCCCCCCCC----CcccCCCCcCcEEEccCccccc------cchhhhhcC
Q 003683 244 VHP--------SLLLHNKLIFVESLKILILSGCLKLRKF----PHVVGSMECLQELLLDGTDIKE------LPLSIEHLF 305 (803)
Q Consensus 244 i~~--------~~~~l~~L~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~i~~------lp~~l~~l~ 305 (803)
+.. .++..++...-|.|++.....|++.... ...+..-.+|+.+.+..|.|.. +-..+..+.
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~ 214 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH 214 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC
Confidence 211 1223334444567777777777653321 1223334677777777777751 122345566
Q ss_pred CCCEEecCCCCCCCC----CCccCcCCCCCcEEEecCCCCC
Q 003683 306 GLVQLTLNDCKNLSS----LPVAISSFQCLRNLKLSGCSKL 342 (803)
Q Consensus 306 ~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~Ls~~~~~ 342 (803)
+|+.|++.+|..... +...+...+.|+.|.+..|-..
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 677777766654322 1112333445566666665443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=7.5e-07 Score=97.93 Aligned_cols=110 Identities=25% Similarity=0.242 Sum_probs=57.8
Q ss_pred CCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCCCCC
Q 003683 416 VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 495 (803)
Q Consensus 416 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 495 (803)
+-+++.-++.|+.|+|+.|+++.+. .+..++.|++|+|+.|..-.. + --...++. |
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~v-p---------------------~l~~~gc~-L 234 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHV-P---------------------QLSMVGCK-L 234 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccc-c---------------------ccchhhhh-h
Confidence 3344444555666666666665554 455566666666665541110 0 00011222 6
Q ss_pred CEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCCCCcccc--hhhhcccccCcccccccc
Q 003683 496 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCK 552 (803)
Q Consensus 496 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 552 (803)
..|.++||.++ .-..+.++.+|+-||+++|-+..-. .-+..|..|+.|+|.|||
T Consensus 235 ~~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 235 QLLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 66666666654 2234556666666666666554211 135566666777777666
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=2.3e-05 Score=55.80 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=18.5
Q ss_pred CCCEEecCCCCCcccchhhhcccccCcccccccc
Q 003683 519 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 552 (803)
Q Consensus 519 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 552 (803)
+|++|++++|+++.+|..+..|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555556666666665553
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00017 Score=51.33 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCeeEEEeCCCCchhccccccCCCCccEEEecCCCC
Q 003683 182 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 217 (803)
Q Consensus 182 ~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~ 217 (803)
++|++|++++|+|+.+|..+++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 467788888888888877788888888888888754
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00031 Score=66.30 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCC-CCCccEEeccCCccccccCccccccCcccccCC
Q 003683 181 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTE-APNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 259 (803)
Q Consensus 181 l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~ 259 (803)
+.+...+||++|.+..+ ..+..++.|.+|.+++|++...-|.+.. +++|..|.+.+| ++.+ ++.+..|..+|+
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~----l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQE----LGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhh----hhhcchhccCCc
Confidence 44555666666666654 3355566666666666666655555443 455666666665 3332 345555566666
Q ss_pred ccEEEecCCCCCCCC---CcccCCCCcCcEEEccCcc
Q 003683 260 LKILILSGCLKLRKF---PHVVGSMECLQELLLDGTD 293 (803)
Q Consensus 260 L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~L~~~~ 293 (803)
|++|.+-+|.....- ...+..+++|+.|++.+..
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 666666665443321 1234555666666665543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=3.7e-05 Score=89.17 Aligned_cols=148 Identities=17% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCccEEEecCCCC--CCCCCCC--CCCCeeEEEeCCCCch--hccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEE
Q 003683 160 NKLRLLDWHRYPL--KSLPSNL--QLDKIVEFKMCYSRIE--ELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEEL 233 (803)
Q Consensus 160 ~~Lr~L~l~~~~l--~~lp~~~--~l~~L~~L~L~~~~i~--~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 233 (803)
.+|++|+++|... ...|..+ .+|.|+.|.+++-.+. .+-.-..++|+|..||+|++... .+..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcHHHhccccHHHH
Confidence 5788888877542 3334333 7888888888886665 23345678888999999888643 44678888888888
Q ss_pred eccCCccccccCccccccCcccccCCccEEEecCCCCCCCC--C----cccCCCCcCcEEEccCcccc--ccchhhhhcC
Q 003683 234 YLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF--P----HVVGSMECLQELLLDGTDIK--ELPLSIEHLF 305 (803)
Q Consensus 234 ~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~L~~~~i~--~lp~~l~~l~ 305 (803)
.+.+-... +-..+..|-.+++|+.||+|........ . +.-..+++|+.|+.+++.+. .+...+..-+
T Consensus 201 ~mrnLe~e-----~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 201 SMRNLEFE-----SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred hccCCCCC-----chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 88763211 1223344455677788888876544322 1 12234778888888888876 2222233344
Q ss_pred CCCEEecC
Q 003683 306 GLVQLTLN 313 (803)
Q Consensus 306 ~L~~L~L~ 313 (803)
+|+.+..-
T Consensus 276 ~L~~i~~~ 283 (699)
T KOG3665|consen 276 NLQQIAAL 283 (699)
T ss_pred cHhhhhhh
Confidence 45544443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=9e-05 Score=86.03 Aligned_cols=133 Identities=28% Similarity=0.238 Sum_probs=83.9
Q ss_pred CCCCCCEEEecCCCCCC-cCCcccCCCCCCcEEecCCCcccCCCchhhhhccCceEeccCCCCCCCCCcccccccccccC
Q 003683 398 GLKSLKTLNLSGCCKLE-NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMG 476 (803)
Q Consensus 398 ~l~~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 476 (803)
.||+|+.|.+.+-.... .+.....++|+|..||+++++++.+ .+++++++|+.|.+.+-.....
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~-------------- 210 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY-------------- 210 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch--------------
Confidence 46777777776633322 2233445677888888888888777 6777888888888776442211
Q ss_pred CcchhhhccCCCCCCCCCCCEEeCCCCCCCCCC-CC----CCCCCCCCCCEEecCCCCCc--ccchhhhcccccCccccc
Q 003683 477 KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA-IP----SDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEME 549 (803)
Q Consensus 477 ~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~-~~----~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~ 549 (803)
.....+-.|++|+.||+|........ +. +.-..+|.|+.||.|++.+. .+...+..-|+|+.+.+-
T Consensus 211 -------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 211 -------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred -------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 00223456788888888877554222 11 12345889999999988777 334455666777777766
Q ss_pred ccc
Q 003683 550 DCK 552 (803)
Q Consensus 550 ~c~ 552 (803)
+|.
T Consensus 284 ~~~ 286 (699)
T KOG3665|consen 284 DCL 286 (699)
T ss_pred hhh
Confidence 554
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=2.2e-05 Score=69.05 Aligned_cols=86 Identities=9% Similarity=0.149 Sum_probs=72.7
Q ss_pred CccEEEecCCCCCCCCCCC--CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCC
Q 003683 161 KLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 238 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 238 (803)
+|...++++|.++++|..| .++.+++|+|++|.|..+|+++..++.|+.|+++.|.+...+.-+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 6777888899999999888 77799999999999999999999999999999999988877777777888888988876
Q ss_pred ccccccCcc
Q 003683 239 TKLRKVHPS 247 (803)
Q Consensus 239 ~~l~~i~~~ 247 (803)
....++..
T Consensus 134 -a~~eid~d 141 (177)
T KOG4579|consen 134 -ARAEIDVD 141 (177)
T ss_pred -ccccCcHH
Confidence 34455543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00075 Score=63.83 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred eeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccEE
Q 003683 184 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 263 (803)
Q Consensus 184 L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L 263 (803)
=+.++|++.++..+..--..+.+...+||++|. ...++.|..+++|.+|.+.+| .+..+.+.+..+ +++|++|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~-----~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTF-----LPNLKTL 93 (233)
T ss_pred ccccccccccccchhhccccccccceecccccc-hhhcccCCCccccceEEecCC-cceeeccchhhh-----ccccceE
Confidence 345555555554332211224567778888875 445667777888888888775 566666665544 5666667
Q ss_pred EecCCCCCCCC-CcccCCCCcCcEEEccCcccc
Q 003683 264 ILSGCLKLRKF-PHVVGSMECLQELLLDGTDIK 295 (803)
Q Consensus 264 ~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~i~ 295 (803)
.+.+|++...- -.-+..++.|++|.+-+|.++
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 77666543221 122344455555555555443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00018 Score=70.73 Aligned_cols=181 Identities=18% Similarity=0.091 Sum_probs=96.2
Q ss_pred cCCccEEEecCCCCCCCCC----cccCCCCcCcEEEccCcccc----ccc-------hhhhhcCCCCEEecCCCCCCCCC
Q 003683 257 VESLKILILSGCLKLRKFP----HVVGSMECLQELLLDGTDIK----ELP-------LSIEHLFGLVQLTLNDCKNLSSL 321 (803)
Q Consensus 257 l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~i~----~lp-------~~l~~l~~L~~L~L~~~~~l~~l 321 (803)
+..+..+++|||.+.+... ..+.+-++|+..+++.-... +++ ..+..+++|+..+|++|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5556666777766655432 33444566666666653322 222 34555677777777776655554
Q ss_pred Ccc----CcCCCCCcEEEecCCCCCccCccc-------------ccccccccccccCcccccccCc-----ccCCCCCCC
Q 003683 322 PVA----ISSFQCLRNLKLSGCSKLKKFPQI-------------VTTMEDLSELNLDGTSITEVPS-----SIELLPGLE 379 (803)
Q Consensus 322 p~~----l~~l~~L~~L~Ls~~~~~~~~~~~-------------~~~l~~L~~L~L~~~~l~~l~~-----~l~~l~~L~ 379 (803)
|.. ++.-..|++|.+++|.....-..- ...-|.|+......|.+...+. .+..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 432 445567777777776543222111 1234566666666666553331 123335666
Q ss_pred EEecCCCCCCcc-----ccccccCCCCCCEEEecCCCCCCc----CCcccCCCCCCcEEecCCCccc
Q 003683 380 LLNLNDCKNFAR-----VPSSINGLKSLKTLNLSGCCKLEN----VPDTLGQVESLEELDISETAVR 437 (803)
Q Consensus 380 ~L~L~~~~~~~~-----~p~~~~~l~~L~~L~L~~c~~~~~----~~~~~~~l~~L~~L~L~~~~i~ 437 (803)
.+.+..|.+-.. +-..+..+.+|+.|++..|..+.. +...+...+.|++|.+.+|-++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 666666654332 111234456667777766654432 2223344455666666666554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.98 E-value=2.8e-05 Score=68.42 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=63.6
Q ss_pred CccEEEecCCCCCCCCCCC----CCCCeeEEEeCCCCchhcccccc-CCCCccEEEecCCCCCCCCCCCCCCCCccEEec
Q 003683 161 KLRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEELWKGIK-HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYL 235 (803)
Q Consensus 161 ~Lr~L~l~~~~l~~lp~~~----~l~~L~~L~L~~~~i~~l~~~~~-~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 235 (803)
.+-.++++.|++..++... ...+|...+|++|.++++|+.+. ..+.+++|++++|++...+.++..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4555677778777776544 67788889999999999887764 456888888888876666657888888888888
Q ss_pred cCCccccccCccc
Q 003683 236 EGCTKLRKVHPSL 248 (803)
Q Consensus 236 ~~~~~l~~i~~~~ 248 (803)
+.|+ +...|..+
T Consensus 108 ~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 108 RFNP-LNAEPRVI 119 (177)
T ss_pred ccCc-cccchHHH
Confidence 8763 44444333
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=0.00015 Score=82.48 Aligned_cols=110 Identities=30% Similarity=0.510 Sum_probs=52.9
Q ss_pred cCCCCEEecCCCCCCCC--CCccCcCCCCCcEEEecCC-CCCccCc----ccccccccccccccCccc-cccc--CcccC
Q 003683 304 LFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGC-SKLKKFP----QIVTTMEDLSELNLDGTS-ITEV--PSSIE 373 (803)
Q Consensus 304 l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~L~~~~-l~~l--~~~l~ 373 (803)
.+.|+.|.+.+|..+.. +-.....+++|+.|++++| ......+ .....+++|+.|+++.+. +++. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666677776665554 3233455677777777663 2211111 122334555555555554 3311 11122
Q ss_pred CCCCCCEEecCCCCCC-cc-ccccccCCCCCCEEEecCCCCC
Q 003683 374 LLPGLELLNLNDCKNF-AR-VPSSINGLKSLKTLNLSGCCKL 413 (803)
Q Consensus 374 ~l~~L~~L~L~~~~~~-~~-~p~~~~~l~~L~~L~L~~c~~~ 413 (803)
.+++|+.|.+.+|... .. +-.....+++|+.|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3556666665555531 11 1122334555666666655544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.65 E-value=0.00021 Score=81.31 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=18.9
Q ss_pred CCCccEEEecCCCCCCC---CCCCCCCCCccEEeccC
Q 003683 204 LNMLKVMKLSHSENLIK---TPDFTEAPNLEELYLEG 237 (803)
Q Consensus 204 L~~L~~L~L~~~~~~~~---~~~l~~l~~L~~L~L~~ 237 (803)
+++|+.|.+..+..... .+....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56666666666544433 22345566666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0033 Score=62.19 Aligned_cols=62 Identities=32% Similarity=0.456 Sum_probs=42.8
Q ss_pred CCCCCCCCEEeCCCC--CCCCCCCCCCCCCCCCCCEEecCCCCCcc---cchhhhcccccCcccccccc
Q 003683 489 LSGLRSLTKLDLSDC--GLGEGAIPSDIGNLHSLNELYLSKNNFVT---LPASINSLLNLKELEMEDCK 552 (803)
Q Consensus 489 l~~l~~L~~L~Ls~~--~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~---lp~~i~~l~~L~~L~L~~c~ 552 (803)
+..+++|+.|.+|.| ++. ..++-....+|+|+.|++++|++.. ++ .+..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence 445677888888888 444 3444445556888888888887763 32 46677778888888876
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.68 E-value=0.011 Score=58.64 Aligned_cols=85 Identities=26% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCCCCEEecCCC--CCCccccccccCCCCCCEEEecCCCCCC-cCCcccCCCCCCcEEecCCCcccCCCc----hhhhh
Q 003683 374 LLPGLELLNLNDC--KNFARVPSSINGLKSLKTLNLSGCCKLE-NVPDTLGQVESLEELDISETAVRRPPS----SVFLM 446 (803)
Q Consensus 374 ~l~~L~~L~L~~~--~~~~~~p~~~~~l~~L~~L~L~~c~~~~-~~~~~~~~l~~L~~L~L~~~~i~~lp~----~~~~l 446 (803)
.+|+|++|.++.| ...+.++.....+|+|++|++++|.+.. ..-..+..+.+|..|++.+|..+.+-. .+..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3455566666655 3444444444445666666666654432 111123445566677777776654322 22337
Q ss_pred ccCceEeccCCC
Q 003683 447 KNLRTLSFSGCN 458 (803)
Q Consensus 447 ~~L~~L~L~~~~ 458 (803)
++|++|+-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 778877766555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0021 Score=63.62 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=68.1
Q ss_pred cCCCCEEecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCc--ccCCCCCCCEE
Q 003683 304 LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--SIELLPGLELL 381 (803)
Q Consensus 304 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~--~l~~l~~L~~L 381 (803)
+.+.+.|++.+|. +..+.- ...++.|++|.|+-|.+..-- .+..+++|++|+|..|.|..+.. .+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4455667777664 333322 345778888888887665432 35577889999999998886653 47889999999
Q ss_pred ecCCCCCCccccc-----cccCCCCCCEEE
Q 003683 382 NLNDCKNFARVPS-----SINGLKSLKTLN 406 (803)
Q Consensus 382 ~L~~~~~~~~~p~-----~~~~l~~L~~L~ 406 (803)
.|..|...+.-+. .+.-+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998887766543 245577777775
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.0011 Score=65.71 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=50.5
Q ss_pred CeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccCcccccCCccE
Q 003683 183 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 262 (803)
Q Consensus 183 ~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~ 262 (803)
+.+.|+..++.+..+ .-+.+++.|++|.|+-|++. .+..+..+++|++|+|+.| .+ +++..+..|+.+|+|++
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN-~I----~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKN-CI----ESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhc-cc----ccHHHHHHHhcCchhhh
Confidence 334444444444432 12345566666666666433 2344677788888888775 22 23445566667788888
Q ss_pred EEecCCCCCCCCC
Q 003683 263 LILSGCLKLRKFP 275 (803)
Q Consensus 263 L~l~~~~~~~~~~ 275 (803)
|.|..|...+.-+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 8888877666544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.34 E-value=0.026 Score=33.30 Aligned_cols=21 Identities=0% Similarity=0.083 Sum_probs=14.5
Q ss_pred CeeEEEeCCCCchhccccccC
Q 003683 183 KIVEFKMCYSRIEELWKGIKH 203 (803)
Q Consensus 183 ~L~~L~L~~~~i~~l~~~~~~ 203 (803)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.016 Score=34.22 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.3
Q ss_pred CCCEEecCCCCCcccchhhh
Q 003683 519 SLNELYLSKNNFVTLPASIN 538 (803)
Q Consensus 519 ~L~~L~Ls~n~l~~lp~~i~ 538 (803)
+|++|+|++|+++.+|+.++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.75 E-value=0.2 Score=45.11 Aligned_cols=102 Identities=12% Similarity=0.234 Sum_probs=35.9
Q ss_pred cCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCc-ccCCCCCCCEEecCCCCCCccccccccCCCCCCE
Q 003683 326 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 404 (803)
Q Consensus 326 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 404 (803)
..+.+|+.+.+.. .....-...+..+++|+.+.+..+ +..++. .+..+++|+.+.+.+ .....-...+..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3344455554442 122222233444444555555443 444432 245555556666543 211122223445566666
Q ss_pred EEecCCCCCCcC-CcccCCCCCCcEEecCC
Q 003683 405 LNLSGCCKLENV-PDTLGQVESLEELDISE 433 (803)
Q Consensus 405 L~L~~c~~~~~~-~~~~~~l~~L~~L~L~~ 433 (803)
+.+..+ ...+ ...+... +|+.+.+..
T Consensus 86 i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 665432 2222 2234444 555555544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.19 E-value=0.41 Score=43.12 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=51.9
Q ss_pred cCHHhhhcCCCcceEEecCcc--ccCccccCCCCccEEEecCCCCCCCCCCC--CCCCeeEEEeCCCCchhccc-cccCC
Q 003683 130 LSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHL 204 (803)
Q Consensus 130 ~~~~~f~~~~~Lr~L~l~~~~--l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~L 204 (803)
++..+|.++++|+.+.+...- +....+.....|+.+.+.+. +..++... .+..|+.+.+.. .+..++. .+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 456688888888888886421 22333344456777777664 66666543 666788888865 5555543 35567
Q ss_pred CCccEEEecCCCCCC-CCCCCCCCCCccEEeccC
Q 003683 205 NMLKVMKLSHSENLI-KTPDFTEAPNLEELYLEG 237 (803)
Q Consensus 205 ~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~ 237 (803)
++|+.+++..+ ... ....+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77777777654 111 12246665 777776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.93 E-value=0.065 Score=29.34 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=5.8
Q ss_pred CCCEEecCCCCCcccc
Q 003683 519 SLNELYLSKNNFVTLP 534 (803)
Q Consensus 519 ~L~~L~Ls~n~l~~lp 534 (803)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4445555555444443
No 74
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=90.29 E-value=0.24 Score=28.27 Aligned_cols=20 Identities=50% Similarity=1.119 Sum_probs=17.7
Q ss_pred CeeEEEeCCCCchhcccccc
Q 003683 183 KIVEFKMCYSRIEELWKGIK 202 (803)
Q Consensus 183 ~L~~L~L~~~~i~~l~~~~~ 202 (803)
+|+.|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998853
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.95 E-value=0.26 Score=26.95 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=3.1
Q ss_pred ccEEEecCCCC
Q 003683 162 LRLLDWHRYPL 172 (803)
Q Consensus 162 Lr~L~l~~~~l 172 (803)
||.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.73 E-value=0.0036 Score=69.79 Aligned_cols=64 Identities=28% Similarity=0.333 Sum_probs=41.2
Q ss_pred CCCC-CCEEeCCCCCCCCCC---CCCCCCCC-CCCCEEecCCCCCc-----ccchhhhcccccCcccccccccc
Q 003683 491 GLRS-LTKLDLSDCGLGEGA---IPSDIGNL-HSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCKRL 554 (803)
Q Consensus 491 ~l~~-L~~L~Ls~~~l~~~~---~~~~l~~l-~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L 554 (803)
..++ +.+|++.+|.+.+.. +...+..+ ..++.++++.|+++ .+...+..+++++.|.+++|+..
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3344 556777777765321 12233444 56788888888777 45667777888888888887633
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.52 E-value=0.53 Score=28.92 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.7
Q ss_pred CCCCCEEecCCCCCcccchhh
Q 003683 517 LHSLNELYLSKNNFVTLPASI 537 (803)
Q Consensus 517 l~~L~~L~Ls~n~l~~lp~~i 537 (803)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887653
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.52 E-value=0.53 Score=28.92 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.7
Q ss_pred CCCCCEEecCCCCCcccchhh
Q 003683 517 LHSLNELYLSKNNFVTLPASI 537 (803)
Q Consensus 517 l~~L~~L~Ls~n~l~~lp~~i 537 (803)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887653
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.35 E-value=0.0051 Score=68.57 Aligned_cols=112 Identities=27% Similarity=0.293 Sum_probs=63.3
Q ss_pred CCCCCcEEecCCCcccCC-----Cchhhhhcc-CceEeccCCCCCCCCCcccccccccccCCcchhhhccCCCCCCC-CC
Q 003683 422 QVESLEELDISETAVRRP-----PSSVFLMKN-LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL-RS 494 (803)
Q Consensus 422 ~l~~L~~L~L~~~~i~~l-----p~~~~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~ 494 (803)
...++++|.+..|.++.. ...+...+. +..|++..|..... ......+.+... +.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~------------------g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV------------------GVEKLLPCLSVLSET 263 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH------------------HHHHHHHHhcccchh
Confidence 345667777776666521 112233334 55566666552211 122223445555 78
Q ss_pred CCEEeCCCCCCCCCC---CCCCCCCCCCCCEEecCCCCCcc-----cchhhhcccccCccccccc
Q 003683 495 LTKLDLSDCGLGEGA---IPSDIGNLHSLNELYLSKNNFVT-----LPASINSLLNLKELEMEDC 551 (803)
Q Consensus 495 L~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c 551 (803)
++.++++.|.+++.. +...+..++.+++|.++.|.+.. +-..+..-..+..+.+.++
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 899999999987533 23456677899999999998772 2223333444555555444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=0.16 Score=48.56 Aligned_cols=68 Identities=29% Similarity=0.281 Sum_probs=41.2
Q ss_pred cCCCCCCCCCCCEEeCCCCCCCCCCCCCC-CCCCCCCCEEecCCC-CCc-ccchhhhcccccCcccccccc
Q 003683 485 MLPSLSGLRSLTKLDLSDCGLGEGAIPSD-IGNLHSLNELYLSKN-NFV-TLPASINSLLNLKELEMEDCK 552 (803)
Q Consensus 485 ~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~-l~~l~~L~~L~Ls~n-~l~-~lp~~i~~l~~L~~L~L~~c~ 552 (803)
-...+..+++++.|.+.+|.-.++.--+- -+..++|+.|+|++| +|+ .--.++..+++|+.|.+.+-+
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 34456677777788888875432221111 224577788888876 455 233467777777777777644
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.86 E-value=0.049 Score=52.91 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=48.8
Q ss_pred hhhcCCCcceEEecCccccC--ccccCCCCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEE
Q 003683 134 AFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVM 210 (803)
Q Consensus 134 ~f~~~~~Lr~L~l~~~~l~~--~~~~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L 210 (803)
.+..+...+.||++.|++.. .-+.....|..|+++.+.+..+|.++ ....++.+++..|+.++.|.+++.+++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34455566666666665542 11222345556666666666666666 5666666666666666666666666666666
Q ss_pred EecCCC
Q 003683 211 KLSHSE 216 (803)
Q Consensus 211 ~L~~~~ 216 (803)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 666554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.37 E-value=0.61 Score=44.75 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCeeEEEeCCCCchhc-cccccCCCCccEEEecCCCCCCC--CCCCC-CCCCccEEeccCCccccccCccccccCccc
Q 003683 180 QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIK--TPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLI 255 (803)
Q Consensus 180 ~l~~L~~L~L~~~~i~~l-~~~~~~L~~L~~L~L~~~~~~~~--~~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~ 255 (803)
.-..++.++-+++.|... -+.+.+++.++.|.+.+|..... +.-++ -.++|+.|+|++|+.+++ .. +..|.
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--~G---L~~L~ 173 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--GG---LACLL 173 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--hH---HHHHH
Confidence 334677888888877643 24456777788888888876543 11122 467888888888877765 12 22333
Q ss_pred ccCCccEEEecC
Q 003683 256 FVESLKILILSG 267 (803)
Q Consensus 256 ~l~~L~~L~l~~ 267 (803)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 344455555443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.94 E-value=1.4 Score=26.98 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCCCcEEecCCCcccCCCchhh
Q 003683 423 VESLEELDISETAVRRPPSSVF 444 (803)
Q Consensus 423 l~~L~~L~L~~~~i~~lp~~~~ 444 (803)
+++|+.|++++|.+..+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3578888888888888877654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.94 E-value=1.4 Score=26.98 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCCCcEEecCCCcccCCCchhh
Q 003683 423 VESLEELDISETAVRRPPSSVF 444 (803)
Q Consensus 423 l~~L~~L~L~~~~i~~lp~~~~ 444 (803)
+++|+.|++++|.+..+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3578888888888888877654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.81 E-value=0.069 Score=51.91 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCCccEEeccCC
Q 003683 160 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 238 (803)
Q Consensus 160 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 238 (803)
...++||++.+++..+-..| .+..|+.|+++.+.+..+|+.++.+..++.+++..|.....+-++...++++++++.++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 46778888888887777777 67888888888888888888888888888888877766655667778888888877775
Q ss_pred c
Q 003683 239 T 239 (803)
Q Consensus 239 ~ 239 (803)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.40 E-value=1.7 Score=26.66 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=12.6
Q ss_pred CCCCEEecCCCCCcccch
Q 003683 518 HSLNELYLSKNNFVTLPA 535 (803)
Q Consensus 518 ~~L~~L~Ls~n~l~~lp~ 535 (803)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777774
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.83 E-value=4.7 Score=24.68 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=9.2
Q ss_pred cccCccccccccccC
Q 003683 541 LNLKELEMEDCKRLQ 555 (803)
Q Consensus 541 ~~L~~L~L~~c~~L~ 555 (803)
++|+.|+|++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 566666666666544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.05 E-value=6.4 Score=23.46 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=8.3
Q ss_pred CCCCEEecCCCCCc
Q 003683 518 HSLNELYLSKNNFV 531 (803)
Q Consensus 518 ~~L~~L~Ls~n~l~ 531 (803)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777665
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.67 E-value=9.8 Score=23.50 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=9.3
Q ss_pred CCCCEEecCCCCCccc
Q 003683 518 HSLNELYLSKNNFVTL 533 (803)
Q Consensus 518 ~~L~~L~Ls~n~l~~l 533 (803)
++|+.|+|+.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665533
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.70 E-value=24 Score=22.03 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=10.2
Q ss_pred CCCCEEecCCCCCc
Q 003683 518 HSLNELYLSKNNFV 531 (803)
Q Consensus 518 ~~L~~L~Ls~n~l~ 531 (803)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777778777765
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.06 E-value=21 Score=39.87 Aligned_cols=80 Identities=23% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCCCEEecCCCCC--CccccccccCCCCCCEEEecCCCCCCcCCcccCCC--CCCcEEecCCCccc--------CCCc
Q 003683 374 LLPGLELLNLNDCKN--FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV--ESLEELDISETAVR--------RPPS 441 (803)
Q Consensus 374 ~l~~L~~L~L~~~~~--~~~~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l--~~L~~L~L~~~~i~--------~lp~ 441 (803)
+.+.+..+.|++|++ +..+.+.-...|+|+.|+|++|.........+... ..|++|.+.||.+. -+-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Q ss_pred hhhhhccCceEe
Q 003683 442 SVFLMKNLRTLS 453 (803)
Q Consensus 442 ~~~~l~~L~~L~ 453 (803)
....+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Done!