Query 003683
Match_columns 803
No_of_seqs 520 out of 5312
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 18:23:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003683.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1732-1735//hhsearch_pdb/003683hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 334.0 26.4 481 78-573 17-549 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 328.7 34.1 437 110-559 99-556 (768)
3 4eco_A Uncharacterized protein 1.0 1 1 312.5 19.4 423 111-573 81-598 (636)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 309.0 33.7 429 111-552 33-534 (606)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 304.9 26.3 425 110-575 322-840 (876)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 304.4 31.0 444 111-571 32-554 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 301.9 22.4 328 221-573 198-577 (636)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 293.5 25.9 372 182-580 323-823 (876)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 292.4 32.7 447 110-571 23-556 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 288.4 34.5 400 139-552 32-484 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=333.96 Aligned_cols=481 Identities=20% Similarity=0.191 Sum_probs=271.1
Q ss_pred HHHHHCCCCCCCCCCCCCC-CHHHHHHH--HHCCCCCCEEEEEEECCCCCCCCCC-CCH---------------------
Q ss_conf 9973039999998101456-05779999--6185972268999833789753100-287---------------------
Q 003683 78 LIVTRQSPEEPGKRSRLWR-QEEVRHVL--RKNTGSELVEGMIIDDYFFPVNEVH-LSA--------------------- 132 (803)
Q Consensus 78 ~i~~~e~~~~~~~~~~l~~-~~~i~~vl--~~~~~~~~i~~i~l~~~~~~~~~~~-~~~--------------------- 132 (803)
-...+....+|. ...-|. ..+.|.+- ..+ +.+|+++.+... ....... +++
T Consensus 17 ll~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l 92 (768)
T 3rgz_A 17 LISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 92 (768)
T ss_dssp HHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHCCCCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCC-CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 999996678962-14687899987688413878--992789877899-86775576696573168022467868886787
Q ss_pred -HHHHCCCCCCEEEECCCCCCCCCCC-----CCCCCCEEEECCCCCC-CCCCCC--CCCCEEEEEECCCCCHHCC-CC--
Q ss_conf -7660598754487638203685212-----7978437984499999-999988--9899159990788801114-35--
Q 003683 133 -KAFSLMTNLGLLKINNVQLLEGLEY-----LSNKLRLLDWHRYPLK-SLPSNL--QLDKIVEFKMCYSRIEELW-KG-- 200 (803)
Q Consensus 133 -~~f~~l~~Lr~L~l~~~~l~~~~~~-----~~~~Lr~L~l~~~~l~-~lp~~~--~l~~L~~L~L~~~~i~~l~-~~-- 200 (803)
..|..+++|++|+++++.+.+.+.. -..+|++|+++++.+. ..|..+ .+.+|++|+++++.+...+ ..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 03324578899898989857870789678727889998989688267747977856388999898979835885871556
Q ss_pred -CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf -5688886599804997998899988999855896047745632385200358322469742997259978887873227
Q 003683 201 -IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG 279 (803)
Q Consensus 201 -~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~ 279 (803)
+.++++|+.|++++|..... .++..+++|++|++++|.....++. +..+++|++|++++|.+.+.+|..++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-------l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIPF-------LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESC-CBCTTCTTCCEEECCSSCCCSCCCB-------CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred HHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC-------CCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 643589889898978803465-7845478689898928827887711-------12699999897948858781657774
Q ss_pred CCCCCCEEECCCCCCC-CCCHHHHHCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8876749980586654-455113311898788337987888788347688-77768971289998647400026563450
Q 003683 280 SMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSF-QCLRNLKLSGCSKLKKFPQIVTTMEDLSE 357 (803)
Q Consensus 280 ~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~l~~lp~~l~~l-~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 357 (803)
.+++|+.|+++++.+. .+|.. .+++|+.|++.+|...+.+|..+... ++|+.|++++|...+..|..+..+++|+.
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 4888898989888665716724--36878989791785577258888844686889989689677842367755877667
Q ss_pred CCCCCCCCC-CCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCEEECC
Q ss_conf 114763561-12853-47999998894479888763343334998-9989981287799867864578--8987589557
Q 003683 358 LNLDGTSIT-EVPSS-IELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKLENVPDTLGQ--VESLEELDIS 432 (803)
Q Consensus 358 L~L~~~~l~-~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~ls~c~~l~~~~~~~~~--l~~L~~L~L~ 432 (803)
|++++|.+. .+|.. +..+++|+.|++++|...+.+|..+..++ +|+.|++++|.....++..+.. +++|+.|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECC
T ss_conf 78978852573797887248888788484784376230989863227719986278747876766653324776189897
Q ss_pred CCCCC-CCCCHHHHHCCCCEEECCCCCCCCCCCC-CCCCCCCCCCC-CCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 98555-7981022203574672468889999986-34665531037-752013115999789998889947799999898
Q 003683 433 ETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLMG-KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA 509 (803)
Q Consensus 433 ~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 509 (803)
+|.+. .+|..+..+++|+.|++++|......+. ......+..+. ..+...+.++..+..+++|+.|++++|.+. +.
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ 481 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GE 481 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCC-CC
T ss_conf 78465424877756898798989588466854677744998898989788154718978828777329990199513-75
Q ss_pred CCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEECCCC
Q ss_conf 7887789888977866888773-34365550666670022253124768999---9993088725886
Q 003683 510 IPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCS 573 (803)
Q Consensus 510 ~p~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ip~l---p~sL~~L~~~~C~ 573 (803)
+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+..+.+|.. .++|+.+++.+|.
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 88788169989989753995189687688568999989897894337488777088989989898884
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=328.70 Aligned_cols=437 Identities=20% Similarity=0.198 Sum_probs=261.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCC-HHHHHCCCCCCEEEECCCCCCCCCC----CCCCCCCEEEECCCCCCCCCC-C---C-
Q ss_conf 7226899983378975310028-7766059875448763820368521----279784379844999999999-8---8-
Q 003683 110 SELVEGMIIDDYFFPVNEVHLS-AKAFSLMTNLGLLKINNVQLLEGLE----YLSNKLRLLDWHRYPLKSLPS-N---L- 179 (803)
Q Consensus 110 ~~~i~~i~l~~~~~~~~~~~~~-~~~f~~l~~Lr~L~l~~~~l~~~~~----~~~~~Lr~L~l~~~~l~~lp~-~---~- 179 (803)
...++.+.+..+ .. ...++ ...+..+++|++|+++++.+.+... .-..+|++|+++++.+...+. . +
T Consensus 99 l~~L~~L~Ls~n-~l--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 99 SASLTSLDLSRN-SL--SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CTTCCEEECCSS-EE--EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred CCCCCEEECCCC-CC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHC
T ss_conf 788998989898-57--870789678727889998989688267747977856388999898979835885871556643
Q ss_pred CCCCEEEEEECCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98991599907888011143556888865998049979988999889998558960477456323852003583224697
Q 003683 180 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 259 (803)
Q Consensus 180 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~ 259 (803)
.+.+|++|+++++.+..... +..+++|++|++++|.....+|.+..+++|++|++++|.....++..++.+ ++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l------~~ 248 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC------TE 248 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTC------SS
T ss_pred CCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCC------CC
T ss_conf 58988989897880346578-454786898989288278877111269999989794885878165777448------88
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 429972599788878732278876749980586654-455113311-898788337987888788347688777689712
Q 003683 260 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHL-FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 337 (803)
Q Consensus 260 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~l~~l-~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls 337 (803)
|+.|++++|...+.+|.. .+++|+.|+++++.+. .+|..+... ++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 898989888665716724--368789897917855772588888446868899896896778423677558776677897
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCC
Q ss_conf 89998647400-026563450114763561-1285347999-9988944798887633433349--98998998128779
Q 003683 338 GCSKLKKFPQI-VTTMEDLSELNLDGTSIT-EVPSSIELLP-GLELLNLNDCKNFARVPSSING--LKSLKTLNLSGCCK 412 (803)
Q Consensus 338 ~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~-~lp~~l~~l~-~L~~L~L~~~~~~~~l~~~~~~--l~~L~~L~ls~c~~ 412 (803)
+|...+.+|.. +..+++|+.|++++|.+. .+|..+..++ +|+.|++++|...+..+..+.. +++|+.|++++|..
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 88525737978872488887884847843762309898632277199862787478767666533247761898977846
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCC-CCCCHHHHHCCCCEEECCCCCCCCCCCC-CCCCCCCCCCC-CCCHHHHCCCCCC
Q ss_conf 9867864578898758955798555-7981022203574672468889999986-34665531037-7520131159997
Q 003683 413 LENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLMG-KSSCLVALMLPSL 489 (803)
Q Consensus 413 l~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l 489 (803)
...+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+. ......+..+. ..+...+.++..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHH
T ss_conf 54248777568987989895884668546777449988989897881547189788287773299901995137588788
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899988899477999998987887789888977866888773-3436555066667002225312476899
Q 003683 490 SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ 559 (803)
Q Consensus 490 ~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ip~ 559 (803)
..+++|+.|++++|.+. +.+|..++.+++|+.|++++|+++ .+|..+..+++|+.|++++|+....+|.
T Consensus 487 ~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 16998998975399518-96876885689999898978943374887770889899898988846882795
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=312.54 Aligned_cols=423 Identities=15% Similarity=0.188 Sum_probs=204.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCC--C-------CCC----CCCCEEEECCCCCC-CCC
Q ss_conf 226899983378975310028776605987544876382036852--1-------279----78437984499999-999
Q 003683 111 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL--E-------YLS----NKLRLLDWHRYPLK-SLP 176 (803)
Q Consensus 111 ~~i~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~~~--~-------~~~----~~Lr~L~l~~~~l~-~lp 176 (803)
.+|+++.+... +. ...++ .++..+++|+.|+++++.+..+. . .+| ..|| +++..+.+. ..|
T Consensus 81 ~~V~~L~L~~~-~l--~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGF-GA--SGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTS-CC--EEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEECCC-CC--CCCCC-HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCCH
T ss_conf 97889984276-65--77288-57856845118987688512377433453235673388888887-6577755411706
Q ss_pred CCC--------------------CCCCEEEEEE--CCCCCHHCCCCCCCCCCCCEEEECCCCCCC---------------
Q ss_conf 988--------------------9899159990--788801114355688886599804997998---------------
Q 003683 177 SNL--------------------QLDKIVEFKM--CYSRIEELWKGIKHLNMLKVMKLSHSENLI--------------- 219 (803)
Q Consensus 177 ~~~--------------------~l~~L~~L~L--~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~--------------- 219 (803)
..+ ....+..+.+ ..++++.+|..+.++++|++|++++|....
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 66778877776427554654101334421300101367775078777256478789886882366423221222221001
Q ss_pred ---CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCC-CCCCCCCCC------CCCCE
Q ss_conf ---899988--99985589604774563238520035832246974299725997-888-787322788------76749
Q 003683 220 ---KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSM------ECLQE 286 (803)
Q Consensus 220 ---~~~~l~--~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~ 286 (803)
.++.+. .+++|++|++++|.....+|..++.+ ++|+.|++++|. +.+ .+|..++.+ ++|+.
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l------~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL------PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC------SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCC------CCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
T ss_conf 0248632200446878889804885776283888349------9978897847988766533578875430465788888
Q ss_pred EECCCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 9805866544551--1331189878833798788878834768877768971289998647400026563-450114763
Q 003683 287 LLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGT 363 (803)
Q Consensus 287 L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~~~ 363 (803)
|+++++.++.+|. .+..+++|+.|++++|...+.+| .+..+++|+.|++++|... .+|..+..+++ |+.|++++|
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred EECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCC
T ss_conf 98979937766765554257888989690880705166-6478898898989899403-033756510236868985298
Q ss_pred CCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCC
Q ss_conf 5611285347999--998894479888763343334-------9989989981287799867864-57889875895579
Q 003683 364 SITEVPSSIELLP--GLELLNLNDCKNFARVPSSIN-------GLKSLKTLNLSGCCKLENVPDT-LGQVESLEELDISE 433 (803)
Q Consensus 364 ~l~~lp~~l~~l~--~L~~L~L~~~~~~~~l~~~~~-------~l~~L~~L~ls~c~~l~~~~~~-~~~l~~L~~L~L~~ 433 (803)
.+..+|..+...+ +|+.|++++|...+..|..+. .+++|+.|++++|... .+|.. +..+++|+.|++++
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCS
T ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCC
T ss_conf 27544665533345766889774885788652442002201125898888977279668-67878871589889898979
Q ss_pred CCCCCCCCHHHHH--------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--CCCCCCEEECCCC
Q ss_conf 8555798102220--------35746724688899999863466553103775201311599978--9998889947799
Q 003683 434 TAVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS--GLRSLTKLDLSDC 503 (803)
Q Consensus 434 ~~i~~lp~~~~~l--------~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~ 503 (803)
|.+..+|...... ++|+.|++++|... .++..+. .+++|+.|++++|
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-----------------------KLSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-----------------------BCCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-----------------------CCCHHHHHCCCCCCCEEECCCC
T ss_conf 97887397884044001221477338989699388-----------------------1685453445887698989899
Q ss_pred CCCCCCCCCCCCCCCCCCEEECC------CCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEECCCC
Q ss_conf 99989878877898889778668------88773-3436555066667002225312476899-99993088725886
Q 003683 504 GLGEGAIPSDIGNLHSLNELYLS------KNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCS 573 (803)
Q Consensus 504 ~l~~~~~p~~l~~l~~L~~L~Ls------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ip~-lp~sL~~L~~~~C~ 573 (803)
.+. + +|..+..+++|+.|+++ +|++. .+|..+..+++|+.|++++|+. +.+|. +.++|+.+++++++
T Consensus 524 ~l~-~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 524 SFS-K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CCS-S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred CCC-C-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHHCCCCEEECCCCC
T ss_conf 887-7-682353088878788988866566731212737785699878898989947-70597683867899876998
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=308.96 Aligned_cols=429 Identities=19% Similarity=0.185 Sum_probs=209.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCC---CCCCCCCCEEEECCCCCCCC-CCCC-CCCCEE
Q ss_conf 226899983378975310028776605987544876382036852---12797843798449999999-9988-989915
Q 003683 111 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL---EYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIV 185 (803)
Q Consensus 111 ~~i~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~~~---~~~~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~ 185 (803)
..++.+.+..+ .+ ..+.+.+|.++++|+.|+++++.+.... ..-..+|++|+++++.+..+ |..+ .+.+|+
T Consensus 33 ~~l~~L~Ls~n-~i---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSFN-VL---PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TTCCEEECTTC-CC---SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCEEECCCC-CC---CCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 86758981587-34---717966725676652897889835524851136843367644889856545865523442153
Q ss_pred EEEECCCCCHHC-CCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCE
Q ss_conf 999078880111-4355688886599804997998-8999889998558960477456323-852003583224697429
Q 003683 186 EFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLI-KTPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKI 262 (803)
Q Consensus 186 ~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~L~~~~~l~~i-~~~~~~l~~L~~l~~L~~ 262 (803)
+|+++++.+..+ +..+.++++|++|++++|.... ..+.+..+++|++|++++|. +..+ +..++.+..++. + .
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~---l-~ 183 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATN---L-S 183 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCS---E-E
T ss_pred EEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCHHHHHHHCCCCE---E-E
T ss_conf 76521267665781012237822389887983411476545687656877765684-45549656332215640---3-8
Q ss_pred EEECCCCCCCCCCCCCCCCC----------------------------------------------------CCCEEECC
Q ss_conf 97259978887873227887----------------------------------------------------67499805
Q 003683 263 LILSGCLKLRKFPHVVGSME----------------------------------------------------CLQELLLD 290 (803)
Q Consensus 263 L~l~~~~~~~~~~~~l~~l~----------------------------------------------------~L~~L~l~ 290 (803)
+++++|......+..+.. . +|+.++++
T Consensus 184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EECCCCCCCCCCHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEE
T ss_conf 966798147548667300-1001355677266777765133564422002011026412268667430320750599944
Q ss_pred CCCCCCCCHH-HHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 8665445511-331189878833798788878834768877768971289998647400026563450114763561-12
Q 003683 291 GTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EV 368 (803)
Q Consensus 291 ~~~~~~l~~~-l~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l 368 (803)
++.+..++.. +..+++|+.|++++|. +..+|..+..+++|+.|++++|......+..+..+++|+.|+++++.+. .+
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 576585577774456678889562882-6777821416546888977168768676023301576898889899744434
Q ss_pred CC-CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CHH
Q ss_conf 85-3479999988944798887633--433349989989981287799867864578898758955798555798--102
Q 003683 369 PS-SIELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSV 443 (803)
Q Consensus 369 p~-~l~~l~~L~~L~L~~~~~~~~l--~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~l~~L~~L~L~~~~i~~lp--~~~ 443 (803)
+. .+..+++|+.|++++|...... +..+..+++|+.|++++|......+..+..+++|+.|++++|.+...+ ..+
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHH
T ss_conf 62455066758988788996664567522105678889898989967757888734774577687888867775652124
Q ss_pred HHHCCCCEEECCCCCCCCCCCC-CCCCCCCCCCC-CCCHHHH---CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 2203574672468889999986-34665531037-7520131---15999789998889947799999898788778988
Q 003683 444 FLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLMG-KSSCLVA---LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLH 518 (803)
Q Consensus 444 ~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~ 518 (803)
..+++|+.|++++|......+. ......+..+. ..+...+ ..+..+..+++|+.|++++|.+. +..|..+..++
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 500 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLK 500 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCT
T ss_pred HCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCC
T ss_conf 17655888989898557768778737887888989899888543454312404887668879999667-06864632656
Q ss_pred CCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCC
Q ss_conf 8977866888773-343655506666700222531
Q 003683 519 SLNELYLSKNNFV-TLPASINSLLNLKELEMEDCK 552 (803)
Q Consensus 519 ~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~ 552 (803)
+|+.|++++|+++ ..|..+..++.| .|++++|+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCC
T ss_conf 78889898980686896684756651-89876894
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=304.91 Aligned_cols=425 Identities=16% Similarity=0.202 Sum_probs=273.5
Q ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEE-CCCCCCCCCCCCCCCC------------CE------E-----
Q ss_conf 7226899983378975310028776605987544876-3820368521279784------------37------9-----
Q 003683 110 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI-NNVQLLEGLEYLSNKL------------RL------L----- 165 (803)
Q Consensus 110 ~~~i~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l-~~~~l~~~~~~~~~~L------------r~------L----- 165 (803)
..+|.++.+... .. ...++ .++..+++|+.|++ +++.+.+........+ |. +
T Consensus 322 ~~~V~~L~Ls~~-~L--~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 322 NGRVTGLSLAGF-GA--KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp TSCEEEEECTTT-CC--EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCCEEEEECCCC-CC--CCCCC-HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 997989987247-89--99485-577415556284301256335666422234454411567888777666654203751
Q ss_pred ---------EECCCCCCCCCCC-CCCCCEEEEEECC--CCCHHCCCCCCCCCCCCEEEECCCCCCC--------------
Q ss_conf ---------8449999999998-8989915999078--8801114355688886599804997998--------------
Q 003683 166 ---------DWHRYPLKSLPSN-LQLDKIVEFKMCY--SRIEELWKGIKHLNMLKVMKLSHSENLI-------------- 219 (803)
Q Consensus 166 ---------~l~~~~l~~lp~~-~~l~~L~~L~L~~--~~i~~l~~~~~~l~~L~~L~L~~~~~~~-------------- 219 (803)
.+...+.. .+.. .....+..+.+.. +.+..+|..+.++++|+.|++++|....
T Consensus 398 ~~~s~l~~~~l~~~~~~-~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEM-KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476 (876)
T ss_dssp GGSCHHHHHHHHTCTTS-CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11567878776507332-43222354423120405666761521188756999878979688678874653223322222
Q ss_pred ----CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCC-CCCCCCCCCC-------CC
Q ss_conf ----899988--99985589604774563238520035832246974299725997-888-7873227887-------67
Q 003683 220 ----KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSME-------CL 284 (803)
Q Consensus 220 ----~~~~l~--~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L 284 (803)
.++.+. .+++|++|++++|.....+|..++.+ ++|+.|++++|. +.+ .+|..++.+. +|
T Consensus 477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCC------CCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 24458744402559997789871898875273877379------998999896898765664617787523301556883
Q ss_pred CEEECCCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 499805866544551--1331189878833798788878834768877768971289998647400026563-4501147
Q 003683 285 QELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLD 361 (803)
Q Consensus 285 ~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~ 361 (803)
+.|+++++.+..+|. .+..+++|+.|++++|... .+| .+..+++|+.|++++|... .+|..+..+++ |+.|+++
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred CEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECC
T ss_conf 199822894776187235515898898989799825-621-2247985007987187125-0358775251149899984
Q ss_pred CCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCC---CCC--CCCCCCEEEECCCCCCCCCCCCC-CCCCCCCEEECCC
Q ss_conf 6356112853479999--98894479888763343---334--99899899812877998678645-7889875895579
Q 003683 362 GTSITEVPSSIELLPG--LELLNLNDCKNFARVPS---SIN--GLKSLKTLNLSGCCKLENVPDTL-GQVESLEELDISE 433 (803)
Q Consensus 362 ~~~l~~lp~~l~~l~~--L~~L~L~~~~~~~~l~~---~~~--~l~~L~~L~ls~c~~l~~~~~~~-~~l~~L~~L~L~~ 433 (803)
+|.+..+|..+..++. |+.|++++|...+.+|. .+. .+++|+.|++++|... .+|..+ ..+++|+.|++++
T Consensus 628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCC
T ss_conf 99787476445225567778897708847886432000000135797688983199688-65978871389889998989
Q ss_pred CCCCCCCCHHHHH--------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--CCCCCCEEECCCC
Q ss_conf 8555798102220--------35746724688899999863466553103775201311599978--9998889947799
Q 003683 434 TAVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLS--GLRSLTKLDLSDC 503 (803)
Q Consensus 434 ~~i~~lp~~~~~l--------~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~ 503 (803)
|.+..+|...... ++|+.|++++|... .++..+. .+++|+.|++++|
T Consensus 707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-----------------------~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-----------------------SLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-----------------------CCCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-----------------------CCHHHHHHCCCCCCCEEEECCC
T ss_conf 96885496784555334321487158988899786-----------------------6527762442798698990899
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCC------CCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEECCCCCC
Q ss_conf 999898788778988897786688------8773-3436555066667002225312476899-9999308872588664
Q 003683 504 GLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSSL 575 (803)
Q Consensus 504 ~l~~~~~p~~l~~l~~L~~L~Ls~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ip~-lp~sL~~L~~~~C~~L 575 (803)
.+.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|++++|+. +.+|. ++++|+.|++++|+-.
T Consensus 764 ~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 764 CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred CCCC--CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHCCCCCEEECCCCCCC
T ss_conf 7876--105661599988998879977665632444868883699878898879978-7408766287788999799888
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=304.40 Aligned_cols=444 Identities=19% Similarity=0.182 Sum_probs=219.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCC---CCCCCCCCEEEECCCCCCCC-CCCC-CCCCEE
Q ss_conf 226899983378975310028776605987544876382036852---12797843798449999999-9988-989915
Q 003683 111 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL---EYLSNKLRLLDWHRYPLKSL-PSNL-QLDKIV 185 (803)
Q Consensus 111 ~~i~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~~~---~~~~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~ 185 (803)
..++.+.+..+ .+ ..+.+.+|.++++|+.|+++++.+.+.. ..-..+|++|+++++.+..+ |..+ .+.+|+
T Consensus 32 ~~l~~L~Ls~n-~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFN-PL---KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTS-CC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCEEECCCC-CC---CEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 87678878889-75---773754555776674886887736643977730601068867879856304852207865378
Q ss_pred EEEECCCCCHHCC-CCCCCCCCCCEEEECCCCCCC-CCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 9990788801114-355688886599804997998-899-9889998558960477456323-85200358322469742
Q 003683 186 EFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLI-KTP-DFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLK 261 (803)
Q Consensus 186 ~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~-~~~-~l~~l~~L~~L~L~~~~~l~~i-~~~~~~l~~L~~l~~L~ 261 (803)
+|+++++.+..++ ..+.++++|++|++++|.... .+| .+.++++|++|++++|. +..+ +..++.+.+++. .+.
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~--~l~ 184 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQ--VNL 184 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTT--CCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC-CEECCHHHHHHHHCCCC--CCC
T ss_conf 887037755544511348988779896878852325306867326777788766885-31057334121203420--024
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCHH---------------------------------------
Q ss_conf 9972599788878732278876749980586654--45511---------------------------------------
Q 003683 262 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK--ELPLS--------------------------------------- 300 (803)
Q Consensus 262 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~l~~~--------------------------------------- 300 (803)
.+++++|......+..+... +|+.|+++++.+. ..+..
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred EEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 30046897532571105676-04335246785616677888602665652314111103677410268177666654347
Q ss_pred -----------------HHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------331189878833798788878834768877768971289998647400026563450114763
Q 003683 301 -----------------IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 363 (803)
Q Consensus 301 -----------------l~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 363 (803)
+..+++|+.|++.++. +..+| .+..+++|+.|++++|.. +.+|.. .+++|+.|+++++
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n 338 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESC
T ss_pred HHEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-CHHHH-HCCCCCCCCEEECCCCCC-CCCCCC--CCCCCCEEECCCC
T ss_conf 450123665555432223548878987714766-04435-433401177897646667-654667--8875564454478
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 5611285347999998894479888763--34333499899899812877998678645788987589557985557981
Q 003683 364 SITEVPSSIELLPGLELLNLNDCKNFAR--VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 441 (803)
Q Consensus 364 ~l~~lp~~l~~l~~L~~L~L~~~~~~~~--l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 441 (803)
....-. .+..+++|+.|++++|..... .+..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.+...+.
T Consensus 339 ~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 339 KGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred CCCCCH-HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 685310-00248988879775873687752012214677554867889953-0005540688888965898870587537
Q ss_pred --HHHHHCCCCEEECCCCCCCCCCCC-CCCCCCCCCCC-CCCHHHH-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf --022203574672468889999986-34665531037-7520131-159997899988899477999998987887789
Q 003683 442 --SVFLMKNLRTLSFSGCNGPPSSAS-WHLHLPFNLMG-KSSCLVA-LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 516 (803)
Q Consensus 442 --~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 516 (803)
.+..+++|+.|++++|......+. ......+..+. ..+...+ ..+..+..+++|+.|++++|.+. +..|..+..
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~ 495 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDT 495 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTT
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCCHHHHCC
T ss_conf 6456462137889896897874335553477878989898983798546776045788998989888577-648656154
Q ss_pred CCCCCEEECCCCCCCCC-CHHHHCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEECC
Q ss_conf 88897786688877334-36555066667002225312476899----999930887258
Q 003683 517 LHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVNG 571 (803)
Q Consensus 517 l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~ip~----lp~sL~~L~~~~ 571 (803)
+++|+.|++++|+++.+ |..+..+++|+.|++++|+ ++.+|. +|.+|+.+++.+
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCHHHHHHCCCCCEEECCC
T ss_conf 6468989898995787487770688768988898983-7666876752102174887628
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=301.86 Aligned_cols=328 Identities=16% Similarity=0.188 Sum_probs=256.3
Q ss_pred CC-CCCCCCCCCEEECCCCCCCCC------------------CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 99-988999855896047745632------------------38520035832246974299725997888787322788
Q 003683 221 TP-DFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM 281 (803)
Q Consensus 221 ~~-~l~~l~~L~~L~L~~~~~l~~------------------i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l 281 (803)
+| .+.++++|++|++++|. +.. +|..++ +..+++|++|++++|...+.+|..++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLK----WDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCHHHHCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCHHCCCCCHHHH----HCCCCCCCEEEECCCCCCCCCHHHHHCC
T ss_conf 78777256478789886882-366423221222221001024863220----0446878889804885776283888349
Q ss_pred CCCCEEECCCCC-CC--CCCHHHHHC------CCCCEEECCCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 767499805866-54--455113311------8987883379878887883--476887776897128999864740002
Q 003683 282 ECLQELLLDGTD-IK--ELPLSIEHL------FGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVT 350 (803)
Q Consensus 282 ~~L~~L~l~~~~-~~--~l~~~l~~l------~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 350 (803)
++|+.|+++++. ++ .+|..+..+ ++|+.|++++|... .+|. .+..+++|+.|++++|...+.+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHC
T ss_conf 9978897847988766533578875430465788888989799377-66765554257888989690880705166-647
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCC------
Q ss_conf 656345011476356112853479999-98894479888763343334998--998998128779986786457------
Q 003683 351 TMEDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPDTLG------ 421 (803)
Q Consensus 351 ~l~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~ls~c~~l~~~~~~~~------ 421 (803)
.+++|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+.... +|+.|++++|......|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 8898898989899403033756510236868985298275-446655333457668897748857886524420022011
Q ss_pred -CCCCCCEEECCCCCCCCCCCHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEE
Q ss_conf -889875895579855579810222-035746724688899999863466553103775201311599978999888994
Q 003683 422 -QVESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 499 (803)
Q Consensus 422 -~l~~L~~L~L~~~~i~~lp~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 499 (803)
.+++|+.|++++|.+..+|..++. +++|++|++++|... ..+... .......+..+++|+.|+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~--------------~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS--------------LKDENENFKNTYLLTSID 494 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS--------------SEETTEECTTGGGCCEEE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH--------------HCCCCCCCCCCCCCCEEE
T ss_conf 25898888977279668678788715898898989799788-739788--------------404400122147733898
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC------CCCCCCCCC---CCCCEEEE
Q ss_conf 7799999898788778--988897786688877334365550666670022253------124768999---99930887
Q 003683 500 LSDCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC------KRLQFLPQL---PPNIIFVK 568 (803)
Q Consensus 500 Ls~~~l~~~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c------~~L~~ip~l---p~sL~~L~ 568 (803)
+++|.+. .+|..+. .+++|+.|++++|+++.+|..+..+++|+.|++++| +..+.+|.- .++|+.|+
T Consensus 495 Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 495 LRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCCCCCC--CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 9699388--16854534458876989898998877682353088878788988866566731212737785699878898
Q ss_pred ECCCC
Q ss_conf 25886
Q 003683 569 VNGCS 573 (803)
Q Consensus 569 ~~~C~ 573 (803)
+++|.
T Consensus 573 Ls~N~ 577 (636)
T 4eco_A 573 IGSND 577 (636)
T ss_dssp CCSSC
T ss_pred CCCCC
T ss_conf 98994
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=293.50 Aligned_cols=372 Identities=17% Similarity=0.190 Sum_probs=284.5
Q ss_pred CCEEEEEECCCCCH-HCCCCCCCCCCCCEEEE-CCCCC------------------------------------------
Q ss_conf 99159990788801-11435568888659980-49979------------------------------------------
Q 003683 182 DKIVEFKMCYSRIE-ELWKGIKHLNMLKVMKL-SHSEN------------------------------------------ 217 (803)
Q Consensus 182 ~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L-~~~~~------------------------------------------ 217 (803)
.+++.|+|+++.+. .+|..+.+|++|++|+| +++..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 97989987247899948557741555628430125633566642223445441156788877766665420375111567
Q ss_pred ----------------------------------CCCCC-CCCCCCCCCEEECCCCCCCCC------------------C
Q ss_conf ----------------------------------98899-988999855896047745632------------------3
Q 003683 218 ----------------------------------LIKTP-DFTEAPNLEELYLEGCTKLRK------------------V 244 (803)
Q Consensus 218 ----------------------------------~~~~~-~l~~l~~L~~L~L~~~~~l~~------------------i 244 (803)
+..+| .+.++++|++|++++|. +.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 878776507332432223544231204056667615211887569998789796886-7887465322332222224458
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC-CC--CCCHHHHHCC-------CCCEEECCC
Q ss_conf 8520035832246974299725997888787322788767499805866-54--4551133118-------987883379
Q 003683 245 HPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD-IK--ELPLSIEHLF-------GLVQLTLND 314 (803)
Q Consensus 245 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~--~l~~~l~~l~-------~L~~L~l~~ 314 (803)
|..++ +..+++|+.|++++|...+.+|..++++++|+.|+++++. ++ .+|..+..+. +|+.|++++
T Consensus 482 P~~l~----f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 482 NEELS----WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TSCCC----GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CHHHH----HCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 74440----25599977898718988752738773799989998968987656646177875233015568831998228
Q ss_pred CCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCC
Q ss_conf 878887883--476887776897128999864740002656345011476356112853479999-98894479888763
Q 003683 315 CKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFAR 391 (803)
Q Consensus 315 ~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~L~~~~~~~~ 391 (803)
|... .+|. .+..+++|+.|++++|... .+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|... .
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CCCC-CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC-C
T ss_conf 9477-6187235515898898989799825-621-2247985007987187125035877525114989998499787-4
Q ss_pred CCCCCCCCCC--CCEEEECCCCCCCCCCCC---CC--CCCCCCEEECCCCCCCCCCCHHH-HHCCCCEEECCCCCCCCCC
Q ss_conf 3433349989--989981287799867864---57--88987589557985557981022-2035746724688899999
Q 003683 392 VPSSINGLKS--LKTLNLSGCCKLENVPDT---LG--QVESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSS 463 (803)
Q Consensus 392 l~~~~~~l~~--L~~L~ls~c~~l~~~~~~---~~--~l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~~ 463 (803)
+|..+..++. |+.|++++|.....+|.. +. .+++|+.|++++|.+..+|..++ .+++|+.|++++|... ..
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred CCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CC
T ss_conf 76445225567778897708847886432000000135797688983199688659788713898899989899688-54
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHHCCC
Q ss_conf 8634665531037752013115999789998889947799999898788778--98889778668887733436555066
Q 003683 464 ASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLL 541 (803)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~i~~l~ 541 (803)
+... .....+....+++|+.|++++|.+. .+|..+. .+++|+.|+|++|.++.+|..+..++
T Consensus 713 p~~~--------------~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~ 776 (876)
T 4ecn_A 713 PENS--------------LKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776 (876)
T ss_dssp CTTS--------------SSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT
T ss_pred CHHH--------------HCCCCCCCCCCCCCCEEECCCCCCC--CCHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCCC
T ss_conf 9678--------------4555334321487158988899786--65277624427986989908997876105661599
Q ss_pred CCCCCCCCCC------CCCCCCCCC---CCCCEEEEECCCCCCEEECC
Q ss_conf 6670022253------124768999---99930887258866403145
Q 003683 542 NLKELEMEDC------KRLQFLPQL---PPNIIFVKVNGCSSLVTLLG 580 (803)
Q Consensus 542 ~L~~L~L~~c------~~L~~ip~l---p~sL~~L~~~~C~~L~~~~~ 580 (803)
+|+.|++++| ...+.+|.. .++|+.|++++|.- ..++.
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCH
T ss_conf 988998879977665632444868883699878898879978-74087
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=292.41 Aligned_cols=447 Identities=17% Similarity=0.174 Sum_probs=274.5
Q ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCC----CCCCCCCCEEEECCCCCCCC-CCCC-CCCC
Q ss_conf 7226899983378975310028776605987544876382036852----12797843798449999999-9988-9899
Q 003683 110 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSL-PSNL-QLDK 183 (803)
Q Consensus 110 ~~~i~~i~l~~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~l~~~~----~~~~~~Lr~L~l~~~~l~~l-p~~~-~l~~ 183 (803)
...++.+.+..+ .+ ..+.+.+|..+++|++|+++++.....+ ..-..+|++|+++++.+..+ |..+ .+.+
T Consensus 23 p~~l~~LdLs~N-~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFN-YI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESC-CC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCCEEECCCC-CC---CCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCC
T ss_conf 998688888778-67---83296677662137088678997744419778537877888879899585319767157866
Q ss_pred EEEEEECCCCCHH-CCCC--CCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1599907888011-1435--5688886599804997998899--988999855896047745632385200358322469
Q 003683 184 IVEFKMCYSRIEE-LWKG--IKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 258 (803)
Q Consensus 184 L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~l~~L~~l~ 258 (803)
|++|++++|.+.. ++.. +.++++|+.|++++|......+ .++++++|++|++++|......+..+..+. .+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~----~~ 174 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ----GK 174 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH----HC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCC----CC
T ss_conf 58701767889734046764556679998889878642325665576388989898989847766788753556----77
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCC------CCEEECCCCCCC-CCCHHHH-----------------------------
Q ss_conf 7429972599788878732278876------749980586654-4551133-----------------------------
Q 003683 259 SLKILILSGCLKLRKFPHVVGSMEC------LQELLLDGTDIK-ELPLSIE----------------------------- 302 (803)
Q Consensus 259 ~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~-~l~~~l~----------------------------- 302 (803)
+|+.|++++|......+..++.+.+ |+.|+++++.+. ..+..+.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred CCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 50357897886665545533223772235740079657886865677888764274410011212122346644456688
Q ss_pred -------H--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf -------1--18987883379878887883476887776897128999864740002656345011476356112-8534
Q 003683 303 -------H--LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSI 372 (803)
Q Consensus 303 -------~--l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~l 372 (803)
. .++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+ +..+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 98556525554786189897994551586345258999999897981898796883688899989898997885187884
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC------------
Q ss_conf 79999988944798887633433349989989981287799867864578898758955798555798------------
Q 003683 373 ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP------------ 440 (803)
Q Consensus 373 ~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~l~~L~~L~L~~~~i~~lp------------ 440 (803)
..+++|+.|++++|......+..+..+++|+.|++++|.... + ..+++|+.|.+++|.+..+|
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-C----CCCCCCCHHCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 689999989898998776286661378889998898997786-1----68898232005899723145545543122145
Q ss_pred --------C--HHHHHCCCCEEECCCCCCCCCCCC--CCCCCCCCCCCCC-CHHH-----HCCCCCCCCCCCCCEEECCC
Q ss_conf --------1--022203574672468889999986--3466553103775-2013-----11599978999888994779
Q 003683 441 --------S--SVFLMKNLRTLSFSGCNGPPSSAS--WHLHLPFNLMGKS-SCLV-----ALMLPSLSGLRSLTKLDLSD 502 (803)
Q Consensus 441 --------~--~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~-----~~~~~~l~~l~~L~~L~Ls~ 502 (803)
. .+..+++|+.|++++|........ ......+..+..+ +... +..+..+.++++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred CCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 67534575566651277666666778712555543335668731002477773644101355355544755365777889
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 999989878877898889778668887733436555066667002225312476899999930887258
Q 003683 503 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 571 (803)
Q Consensus 503 ~~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~ip~lp~sL~~L~~~~ 571 (803)
|.+. +..+..+..+++|+.|+|++|+++.+|..... ++|+.|++++|+.....|...++|+.+++.+
T Consensus 490 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 490 NYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred CCCC-CCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH-CCCCEEECCCCCCCCCCHHHHCCCCEEEECC
T ss_conf 8565-53955704501221569999978745710110-0455888988847888966837768899319
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=288.38 Aligned_cols=400 Identities=17% Similarity=0.113 Sum_probs=216.4
Q ss_pred CCCCEEEECCCCCCCCCC---CCCCCCCEEEECCCCCCCCC-CCC-CCCCEEEEEECCCCCHHC-CCCCCCCCCCCEEEE
Q ss_conf 875448763820368521---27978437984499999999-988-989915999078880111-435568888659980
Q 003683 139 TNLGLLKINNVQLLEGLE---YLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKL 212 (803)
Q Consensus 139 ~~Lr~L~l~~~~l~~~~~---~~~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L 212 (803)
++++.|+++++.+.+... .-..+|++|+++++.+..++ ..| .+.+|++|+++++.+..+ |..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC----E
Q ss_conf 499799889-998899985589604774563-2385200358322469742997259978887873227887674----9
Q 003683 213 SHSENLIKT-PDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ----E 286 (803)
Q Consensus 213 ~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~-~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~ 286 (803)
++|...... ..+..+++|++|++++|.... .+|..++. +++|++|++++|......+..++.+.+|+ .
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT------CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHH------CCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCE
T ss_conf 3775554451134898877989687885232530686732------6777788766885310573341212034200243
Q ss_pred EECCCCCCCCCCHHHHHCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEE-------------------------------
Q ss_conf 98058665445511331189878833798788-8788347688777689-------------------------------
Q 003683 287 LLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL-SSLPVAISSFQCLRNL------------------------------- 334 (803)
Q Consensus 287 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~L------------------------------- 334 (803)
++++++.+..++.......+|+.|++++|... ...|..+..++.++.+
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred EECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 00468975325711056760433524678561667788860266565231411110367741026817766665434745
Q ss_pred -EE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf -71-2899986474000265634501147635611285347999998894479888763343334998998998128779
Q 003683 335 -KL-SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 412 (803)
Q Consensus 335 -~L-s~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~ 412 (803)
.+ ..+...+..+. +..+++|+.|+++++.+..+| .+..+++|+.|++.+|.. +.+|. + .+++|+.|++++|..
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSS
T ss_pred EECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH-HCCCCCCCCEEECCCCCC-CCCCC-C-CCCCCCEEECCCCCC
T ss_conf 012366555543222-354887898771476604435-433401177897646667-65466-7-887556445447868
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCC---CCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHCCC-C
Q ss_conf 986786457889875895579855579---81022203574672468889999986346655310377-520131159-9
Q 003683 413 LENVPDTLGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK-SSCLVALML-P 487 (803)
Q Consensus 413 l~~~~~~~~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 487 (803)
.... .+..+++|+.|++++|.+... +..+..+++|++|++++|..............+..+.. .+...+..+ .
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred CCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 5310--00248988879775873687752012214677554867889953000554068888896589887058753764
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCHHHHCCCCCCCCCCCCCC
Q ss_conf 978999888994779999989878877898889778668887733--43655506666700222531
Q 003683 488 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLKELEMEDCK 552 (803)
Q Consensus 488 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~ 552 (803)
.+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.++. +|..+..+++|+.|++++|+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp TTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred HHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCC
T ss_conf 5646213788989689787-43355534778789898989837985467760457889989898885
Done!