BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003686
(803 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y +LGV+P D +TI+ YR+LA HPD S AEA F+ L EAW +L D+ +R +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 126 YDQ 128
YDQ
Sbjct: 89 YDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 4 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 63
Query: 124 LDYDQ 128
+YDQ
Sbjct: 64 AEYDQ 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y +LGV A DE ++ YR+LAL HPDK+ + GA AF+ + A+ +LS+ KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 126 YDQKRNG 132
YDQ +G
Sbjct: 68 YDQFGSG 74
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKS--TSAGAEAAFQILTEAWNILSD 119
+GMVD+Y VL V A E I+ YRKLAL HPDK+ AE F+ + EA+ +LSD
Sbjct: 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
Query: 120 KSKRLDYDQKRNGRYGKSPN 139
KR YD RYG P+
Sbjct: 66 AKKRDIYD-----RYGSGPS 80
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKS--TSAGAEAAFQILTEAWNILSD 119
+GM ++Y VLGV+ A E I+ YRKLAL HPDK+ AE F++++EA+ +LSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 120 KSKRLDYDQ 128
KR YD+
Sbjct: 66 SKKRSLYDR 74
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 62 NGMVD---WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS 118
N MV +Y VLGV+P A D ++ YRK+AL HPDK+ GAE F+ +++A+ +LS
Sbjct: 2 NAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-GAE-QFKQISQAYEVLS 59
Query: 119 DKSKRLDYDQ 128
D+ KR YDQ
Sbjct: 60 DEKKRQIYDQ 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 63 GMVD---WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSD 119
GMV +Y VLGV+P A E ++ YRKLAL HPDK+ + G + F+ +++A+ +LSD
Sbjct: 1 GMVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSD 58
Query: 120 KSKRLDYDQ 128
KR YD+
Sbjct: 59 AKKRELYDK 67
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y+ LG+ A DE I+ YR+ AL HPDK+ GAE F+ + EA+++LSD KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 126 YDQKRNGRYGK 136
+D RYG+
Sbjct: 64 FD-----RYGE 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D YRVLGV A I+ Y+KLA HPDK+ GAE F +++A+ ILS++ KR +
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 126 YDQKRNGRYGKSPN 139
YD YG P+
Sbjct: 78 YDH-----YGSGPS 86
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 67 WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDY 126
+Y +LGV A + I+ + KLA+ HPDK+ S AEA F+ + EA+ LSD ++R +Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 127 D 127
D
Sbjct: 69 D 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRL 124
D+Y +LGV A++ I+ Y++LA+ HPD++ AEA F+ + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 DYDQ 128
YDQ
Sbjct: 64 AYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRL 124
D+Y +LGV A++ I+ Y++LA+ HPD++ AEA F+ + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 DYDQ 128
YDQ
Sbjct: 64 AYDQ 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 62 NGMVD---WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS 118
N MV Y +LGV P A+++ ++ YRK AL HPDK T G F+ ++EA+ IL+
Sbjct: 2 NAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILN 59
Query: 119 DKSKRLDYDQ 128
D KR YDQ
Sbjct: 60 DPQKREIYDQ 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRL 124
D+Y +LGV A++ I+ Y++LA+ HPD++ AEA F+ + EA+ +L+D KR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 DYDQ 128
YDQ
Sbjct: 64 AYDQ 67
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS---AGA-EAAFQILTE---AWNILS 118
DWY +LG +P A+ ++ +Y+KL L+ HPDK ++ AG E Q E AW IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 119 DKSKRLDYDQKRNG 132
++ + YD +R+G
Sbjct: 77 NEETKKKYDLQRSG 90
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 57 ASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNI 116
A +RI D + +LGV+P A + + YRKLA+++HPDK + G+E AF+ + A
Sbjct: 19 AIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTA 78
Query: 117 L 117
L
Sbjct: 79 L 79
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS---AG-AEAAFQILTE---AWNILS 118
DWY +LG +P A+ ++ +Y+KL L+ HPDK ++ AG E Q E AW IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 119 DKSKRLDYDQKR 130
++ + +YD +R
Sbjct: 71 NEETKREYDLQR 82
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKS--TSAGAEAAFQILTEAWNILSDKS 121
M +Y +L V A + I+ YR+ AL HPDK+ AE F+ + EA+ +LSDK
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 122 KRLDYDQKRNGRYG 135
KR YD R GR G
Sbjct: 61 KREIYD--RYGREG 72
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRL 124
D+Y++LGV A + I+ Y +LA HPD + A+ F L EA+ +LSD+ KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 125 DYDQKRNGRYGKSPN 139
YD YG P+
Sbjct: 68 QYDA-----YGSGPS 77
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 67 WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAA--FQILTEAWNILSDKSKRL 124
Y VLG++ A + I+ YRKLAL HPDK+ EAA F+ + A IL+D +KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD-NPEAADKFKEINNAHAILTDATKRN 77
Query: 125 DYDQ 128
YD+
Sbjct: 78 IYDK 81
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKS-TSAGAEAAFQILTEAWNILSDKSKRL 124
++Y +LGV A I+ ++KLAL +HPDK+ + A F + A+ +L D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 125 DYDQ 128
YD+
Sbjct: 63 KYDK 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKS-TSAGAEAAFQILTEAWNILSDKSKRL 124
++Y +LGV A I+ ++KLAL +HPDK+ + A F + A+ +L D+ R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 125 DYDQ 128
YD+
Sbjct: 82 KYDK 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKS-TSAGAEAAFQILTEAWNILSDKSKRL 124
D+Y +LG + L+ E I +++ AL HPDK + A FQ L +A IL+++ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 125 DYDQKR 130
YD R
Sbjct: 81 RYDHWR 86
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPD----KSTSAGAEAAFQILTEAWNILSDKS 121
D+Y++LGV+ A + I YRKLAL HPD + AE F + A +LSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 122 KRLDYD 127
R +D
Sbjct: 443 XRKKFD 448
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWNILSDKSKR 123
++ +G+ L E ++ YRK L++HPDK+T A+ F L +AW+ ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPD----KSTSAGAEAAFQILTEAWNILSDKS 121
D+Y++LGV+ A + I YRKLAL HPD + AE F + A +LSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 122 KRLDYD 127
R +D
Sbjct: 443 MRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDK-STSAGAEAAFQILTEAWNILSDKSKRLDY 126
Y +LGV A I+ Y + + HPD+ S SA A F +++A+ +L + R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 127 DQ 128
D+
Sbjct: 80 DR 81
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWNILSDKSKR 123
++ +G+ L E ++ YRK L++HPDK+T A+ F L +AW+ ++ ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 124 LDY 126
Y
Sbjct: 112 PLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWNILSDKSKR 123
++ +G L E ++ YRK L++HPDK+T A+ F L +AW+ ++ ++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQK 98
Query: 124 LDY 126
Y
Sbjct: 99 PLY 101
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 76 LADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYG 135
L DDE + KLAL D T+ GAEAA IL E W + + DQ+ GR G
Sbjct: 6 LVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEW------VQVIICDQRMPGRTG 59
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 75 PLAD---DETIQMQYRKLALIIHPDKSTSAGAEA--------AFQILTEAWN 115
PL D ++ Y++ LI+HPDK GA A F++L EAW+
Sbjct: 47 PLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>pdb|2VUH|B Chain B, Crystal Structure Of The D55e Mutant Of The Hupr Receiver
Domain
Length = 139
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 76 LADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAW 114
L DDE + KLAL D T+ GAEAA IL E W
Sbjct: 6 LVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEW 44
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWN 115
++ +G+ L E ++ YRK L++HP K+T A+ F L +AW+
Sbjct: 37 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 88
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWN 115
++ +G+ L E ++ YRK L++HP K+T A+ F L +AW+
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 87
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 601 YPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVF 660
+P EV + D + D I +YD+ + LE+ EK +G+ PL + + +
Sbjct: 374 FPTLPEVPTFFAEILTDRGDF--DTAIKQYDIAKRLEEVQEKIHVGIGPL--IGKATILA 429
Query: 661 RQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEA 720
RQ S+ T EE F + + LLT K C ELDP S ++ +
Sbjct: 430 RQ---SSQDPTQLDEEKFNAAIK----LLT--------KAC-ELDPRSEQAKIGLAQLKL 473
Query: 721 QLEKMETAENTKEEYPVGGEQNTEK 745
Q+EK++ A E+ + EK
Sbjct: 474 QMEKIDEAIELFEDSAILARTMDEK 498
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 601 YPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYNEKTGIGVVPLLKVPRFKTVF 660
+P EV + D + D I +YD+ + LE+ EK +G+ PL + + +
Sbjct: 370 FPTLPEVPTFFAEILTDRGDF--DTAIKQYDIAKRLEEVQEKIHVGIGPL--IGKATILA 425
Query: 661 RQHLEQSKRRTIPREEIFRFSHRVPSYLLTGQEGHNSPKGCLELDPASTPLELLQVLTEA 720
RQ S+ T EE F + + LLT K C ELDP S ++ +
Sbjct: 426 RQ---SSQDPTQLDEEKFNAAIK----LLT--------KAC-ELDPRSEQAKIGLAQLKL 469
Query: 721 QLEKMETAENTKEEYPVGGEQNTEK 745
Q+EK++ A E+ + EK
Sbjct: 470 QMEKIDEAIELFEDSAILARTMDEK 494
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 721 QLEKMETAENTKEEYPVGGEQNTEKELVKNGKIIEEQGISEDVRKKVEKEAM 772
++ K E E K GGE T GK+ E GI ++VRK+VE+ ++
Sbjct: 30 EVRKKEHLEGLKALIVPGGESTTI------GKLAREYGIEDEVRKRVEEGSL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,301,663
Number of Sequences: 62578
Number of extensions: 991993
Number of successful extensions: 2320
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2270
Number of HSP's gapped (non-prelim): 44
length of query: 803
length of database: 14,973,337
effective HSP length: 107
effective length of query: 696
effective length of database: 8,277,491
effective search space: 5761133736
effective search space used: 5761133736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)