BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003686
(803 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2
SV=2
Length = 376
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 70/173 (40%), Gaps = 45/173 (26%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYP--------------------- 39
ME NKDEA R +A K + E A KAQ+LYP
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDH 60
Query: 40 ------------------------ELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEP 75
E G ++A KR+ D+Y +LGV
Sbjct: 61 PQPTDTTHTTTKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSR 120
Query: 76 LADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128
A DE ++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YDQ
Sbjct: 121 SASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 173
>sp|Q7ZXQ8|DJB14_XENLA DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14
PE=2 SV=1
Length = 371
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 44/167 (26%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV------- 53
ME N+DEA R ++ + + D E A+ KA++LYP + V+LD
Sbjct: 1 MESNRDEAERCVRIGKAAIEAGDKEKARRFFSKAERLYPS----SEARVLLDALEKNDTA 56
Query: 54 ---------------------------------HISASKRINGMVDWYRVLGVEPLADDE 80
+ +RI +Y VLGV P A +E
Sbjct: 57 GNGPQSEKMSKSTEQPKAEKDSSGDTGKGHTQDQVDGVQRIKKCKTYYEVLGVSPDAGEE 116
Query: 81 TIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYD 127
++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YD
Sbjct: 117 DLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD 163
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1
SV=4
Length = 375
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 44/172 (25%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYP---------ELDGLPQLL--- 48
ME NKDEA R +A K + + A KAQ+LYP L+ PQ
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQ 60
Query: 49 -----VILDVH---------------------------ISASKRINGMVDWYRVLGVEPL 76
H ++A KR+ D+Y +LGV
Sbjct: 61 PPPTDTTHATHRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRG 120
Query: 77 ADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128
A DE ++ YR+LAL HPDK+ + GA AF+ + A+ +LS+ KR YDQ
Sbjct: 121 ASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
>sp|Q58DR2|DJB12_BOVIN DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2
SV=1
Length = 370
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 74/176 (42%), Gaps = 52/176 (29%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV------- 53
ME NKDEA R +A K + + A KAQ+LYP P++ +++
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYP----TPRVHALIESLNQKPQP 56
Query: 54 -----------------------------------------HISASKRINGMVDWYRVLG 72
++A KR+ D+Y +LG
Sbjct: 57 AGDQPQPTEATHTTHRKAAGANTASANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILG 116
Query: 73 VEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128
V A DE ++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YDQ
Sbjct: 117 VSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
>sp|Q87VN8|CBPA_PSESM Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=cbpA PE=3 SV=1
Length = 314
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y++L VEP ADD+ I+ YRKLA HPD S AGAE F+ +EA+ +LS KR +
Sbjct: 5 DYYKILDVEPAADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAE 64
Query: 126 YDQKRN-GRYGK 136
YD+ R GR G+
Sbjct: 65 YDELRKYGRQGR 76
>sp|Q0IIE8|DJB14_BOVIN DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 79/190 (41%), Gaps = 60/190 (31%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV------- 53
ME N+DEA + ++A + L + E A+ KA+KLYP LP +L++
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYP----LPSARALLEIIMKNGST 56
Query: 54 ---------------------------------------HISASKRINGMVDWYRVLGVE 74
+ IN ++Y VLGV
Sbjct: 57 AGNSPHCRKPSGGGDQSKPNCTKDSSSGSGESGKGYTKDQVDGVLSINKCKNYYEVLGVT 116
Query: 75 PLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYD------- 127
A DE ++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEEQ 176
Query: 128 ---QKRNGRY 134
Q+ NGR+
Sbjct: 177 ACNQQNNGRF 186
>sp|Q28I38|DJB14_XENTR DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14
PE=2 SV=1
Length = 375
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELD------------------ 42
ME N+DEA R ++A+ + D E AK KA++LYP +
Sbjct: 1 MESNRDEAERCVRIAKAAIEAGDKEKAKRFLSKAERLYPSSEARALLQAFEKNDTAGNGP 60
Query: 43 -------GLPQLLVILDVHISAS---------------KRINGMVDWYRVLGVEPLADDE 80
G Q D + SAS +RI +Y VLGV A +E
Sbjct: 61 QSAKMAKGTEQPKAEKDSNASASSDTGKGHTQDQLDGVQRIKKCKTYYEVLGVSTDAGEE 120
Query: 81 TIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYD 127
++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YD
Sbjct: 121 DLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD 167
>sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 60/190 (31%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV------- 53
ME N+DEA + ++A + L + E A+ KA+KLYP LP +L++
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYP----LPSARALLEIIMKNGST 56
Query: 54 ---------------------------------------HISASKRINGMVDWYRVLGVE 74
+ IN ++Y VLGV
Sbjct: 57 AGNSPHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNYYEVLGVT 116
Query: 75 PLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYD------- 127
A DE ++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEEQ 176
Query: 128 ---QKRNGRY 134
+ NGR+
Sbjct: 177 ACNHQNNGRF 186
>sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2
SV=1
Length = 379
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 60/190 (31%)
Query: 1 MECNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV------- 53
ME N+DEA + ++A + L+ + + A+ KA+KLYP LP +L++
Sbjct: 1 MEGNRDEAEKCVQIAREALSAGNRDKAQRFLQKAEKLYP----LPAARALLEIIMKNGST 56
Query: 54 ---------------------------------------HISASKRINGMVDWYRVLGVE 74
+ IN ++Y VLGV
Sbjct: 57 AGSSTHCRKPPGSSDQSKPSCGKDGTSGAGEGGKVYTKDQVEGVLSINKCKNYYEVLGVT 116
Query: 75 PLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYD------- 127
A DE ++ YRKLAL HPDK+ + GA AF+ + A+ +LS+ KR YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGSEEQ 176
Query: 128 ---QKRNGRY 134
+ NGR+
Sbjct: 177 ACNHQNNGRF 186
>sp|B0KK26|CBPA_PSEPG Curved DNA-binding protein OS=Pseudomonas putida (strain GB-1)
GN=cbpA PE=3 SV=1
Length = 318
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y++LGVEP ADD+ I+ YRKLA HPD S AE F+ EA+ +L D KR +
Sbjct: 5 DYYKILGVEPTADDKAIKAAYRKLARKYHPDVSKERDAEDKFKEANEAYEVLGDAQKRAE 64
Query: 126 YDQKR--NGRYGK 136
+D+ R G++G+
Sbjct: 65 FDEIRKYGGQHGR 77
>sp|Q57QP2|CBPA_SALCH Curved DNA-binding protein OS=Salmonella choleraesuis (strain
SC-B67) GN=cbpA PE=3 SV=1
Length = 306
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPNAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|Q88DH7|CBPA_PSEPK Curved DNA-binding protein OS=Pseudomonas putida (strain KT2440)
GN=cbpA PE=3 SV=1
Length = 319
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y++LGVEP AD++ I+ YRKLA HPD S AE F+ EA+ +L D KR +
Sbjct: 5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAE 64
Query: 126 YDQKR--NGRYGK 136
+D+ R G++G+
Sbjct: 65 FDEIRKYGGQHGR 77
>sp|B1J5W7|CBPA_PSEPW Curved DNA-binding protein OS=Pseudomonas putida (strain W619)
GN=cbpA PE=3 SV=1
Length = 317
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y++LGVEP AD++ I+ YRKLA HPD S AE F+ EA+ +L D KR +
Sbjct: 5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAE 64
Query: 126 YDQKR--NGRYGK 136
+D+ R G++G+
Sbjct: 65 FDEIRKYGGQHGR 77
>sp|A5W9N6|CBPA_PSEP1 Curved DNA-binding protein OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=cbpA PE=3 SV=1
Length = 319
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y++LGVEP AD++ I+ YRKLA HPD S AE F+ EA+ +L D KR +
Sbjct: 5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAE 64
Query: 126 YDQKR--NGRYGK 136
+D+ R G++G+
Sbjct: 65 FDEIRKYGGQHGR 77
>sp|Q32HR2|CBPA_SHIDS Curved DNA-binding protein OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=cbpA PE=3 SV=1
Length = 306
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAHFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|A8GIL6|CBPA_SERP5 Curved DNA-binding protein OS=Serratia proteamaculans (strain 568)
GN=cbpA PE=3 SV=1
Length = 309
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y +LGV+P D + I+ YR+LA HPD ST + AE F+++ EA+ +L D +R +
Sbjct: 5 DYYAILGVKPADDLKAIKTAYRRLARKYHPDVSTESNAEEQFKLVAEAYEVLKDDERRAE 64
Query: 126 YDQKRNGR 133
YDQ R R
Sbjct: 65 YDQLREHR 72
>sp|B7LP19|CBPA_ESCF3 Curved DNA-binding protein OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q1RDL6|CBPA_ECOUT Curved DNA-binding protein OS=Escherichia coli (strain UTI89 /
UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q8FJ50|CBPA_ECOL6 Curved DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q0TJ66|CBPA_ECOL5 Curved DNA-binding protein OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|A1A9Q7|CBPA_ECOK1 Curved DNA-binding protein OS=Escherichia coli O1:K1 / APEC GN=cbpA
PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7MPT2|CBPA_ECO81 Curved DNA-binding protein OS=Escherichia coli O81 (strain ED1a)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7MIE6|CBPA_ECO45 Curved DNA-binding protein OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7UNY3|CBPA_ECO27 Curved DNA-binding protein OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q7C254|CBPA_SHIFL Curved DNA-binding protein OS=Shigella flexneri GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q0T634|CBPA_SHIF8 Curved DNA-binding protein OS=Shigella flexneri serotype 5b (strain
8401) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|P36659|CBPA_ECOLI Curved DNA-binding protein OS=Escherichia coli (strain K12) GN=cbpA
PE=1 SV=2
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B1IV97|CBPA_ECOLC Curved DNA-binding protein OS=Escherichia coli (strain ATCC 8739 /
DSM 1576 / Crooks) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|A7ZYV2|CBPA_ECOHS Curved DNA-binding protein OS=Escherichia coli O9:H4 (strain HS)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B1X8V5|CBPA_ECODH Curved DNA-binding protein OS=Escherichia coli (strain K12 / DH10B)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|C4ZQC8|CBPA_ECOBW Curved DNA-binding protein OS=Escherichia coli (strain K12 / MC4100
/ BW2952) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7LFA9|CBPA_ECO55 Curved DNA-binding protein OS=Escherichia coli (strain 55989 /
EAEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q31YR1|CBPA_SHIBS Curved DNA-binding protein OS=Shigella boydii serotype 4 (strain
Sb227) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B6I976|CBPA_ECOSE Curved DNA-binding protein OS=Escherichia coli (strain SE11)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7M8Y3|CBPA_ECO8A Curved DNA-binding protein OS=Escherichia coli O8 (strain IAI1)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7NLC5|CBPA_ECO7I Curved DNA-binding protein OS=Escherichia coli O7:K1 (strain IAI39
/ ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|A7ZKA5|CBPA_ECO24 Curved DNA-binding protein OS=Escherichia coli O139:H28 (strain
E24377A / ETEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q3Z3C3|CBPA_SHISS Curved DNA-binding protein OS=Shigella sonnei (strain Ss046)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|A9MH53|CBPA_SALAR Curved DNA-binding protein OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|B1LJ04|CBPA_ECOSM Curved DNA-binding protein OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B2TTP8|CBPA_SHIB3 Curved DNA-binding protein OS=Shigella boydii serotype 18 (strain
CDC 3083-94 / BS512) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLD 125
D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|P63263|CBPA_SALTY Curved DNA-binding protein OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|P63262|CBPA_SALTI Curved DNA-binding protein OS=Salmonella typhi GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|B4TSM3|CBPA_SALSV Curved DNA-binding protein OS=Salmonella schwarzengrund (strain
CVM19633) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|B5BBH2|CBPA_SALPK Curved DNA-binding protein OS=Salmonella paratyphi A (strain
AKU_12601) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|C0Q893|CBPA_SALPC Curved DNA-binding protein OS=Salmonella paratyphi C (strain
RKS4594) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|A9N6S2|CBPA_SALPB Curved DNA-binding protein OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|Q5PGA2|CBPA_SALPA Curved DNA-binding protein OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|B4T2U5|CBPA_SALNS Curved DNA-binding protein OS=Salmonella newport (strain SL254)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
>sp|B4TEN5|CBPA_SALHS Curved DNA-binding protein OS=Salmonella heidelberg (strain SL476)
GN=cbpA PE=3 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKR 123
+ D+Y ++GV+P D +TI+ YR+LA HPD S AEA F+ + EAW +LSD+ +R
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62
Query: 124 LDYDQ 128
+YDQ
Sbjct: 63 AEYDQ 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,213,520
Number of Sequences: 539616
Number of extensions: 13984789
Number of successful extensions: 33265
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 31697
Number of HSP's gapped (non-prelim): 1218
length of query: 803
length of database: 191,569,459
effective HSP length: 126
effective length of query: 677
effective length of database: 123,577,843
effective search space: 83662199711
effective search space used: 83662199711
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)