Query 003686
Match_columns 803
No_of_seqs 384 out of 2330
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 2.3E-83 4.9E-88 657.0 22.3 212 482-694 3-216 (217)
2 COG0484 DnaJ DnaJ-class molecu 99.9 6.7E-22 1.4E-26 216.3 10.2 72 64-135 3-75 (371)
3 KOG0713 Molecular chaperone (D 99.7 8.7E-19 1.9E-23 187.9 6.0 73 62-134 13-86 (336)
4 KOG0712 Molecular chaperone (D 99.7 5.5E-18 1.2E-22 183.6 10.7 69 64-134 3-71 (337)
5 KOG0624 dsRNA-activated protei 99.7 2.7E-16 5.8E-21 168.6 12.7 124 5-132 338-465 (504)
6 PRK14288 chaperone protein Dna 99.7 8.8E-17 1.9E-21 178.5 6.6 70 64-133 2-72 (369)
7 PRK14296 chaperone protein Dna 99.7 9E-17 1.9E-21 178.6 6.6 69 64-132 3-71 (372)
8 PRK14279 chaperone protein Dna 99.6 4.8E-16 1E-20 173.9 6.3 68 64-131 8-76 (392)
9 PRK14287 chaperone protein Dna 99.6 1.2E-15 2.5E-20 169.7 6.8 70 64-133 3-72 (371)
10 PRK14286 chaperone protein Dna 99.6 1.1E-15 2.4E-20 170.0 6.6 70 64-133 3-73 (372)
11 PRK14278 chaperone protein Dna 99.6 1.7E-15 3.6E-20 168.8 7.8 68 65-132 3-70 (378)
12 PRK14276 chaperone protein Dna 99.6 1.3E-15 2.8E-20 169.9 6.6 70 64-133 3-72 (380)
13 PRK14298 chaperone protein Dna 99.6 1.4E-15 3.1E-20 169.3 6.3 70 64-133 4-73 (377)
14 PRK14299 chaperone protein Dna 99.6 1.7E-15 3.7E-20 163.3 6.5 69 64-132 3-71 (291)
15 PRK14283 chaperone protein Dna 99.6 1.8E-15 3.9E-20 168.5 6.7 70 64-133 4-73 (378)
16 PRK14291 chaperone protein Dna 99.6 2.2E-15 4.7E-20 168.1 6.5 70 64-133 2-71 (382)
17 PTZ00037 DnaJ_C chaperone prot 99.6 1.9E-15 4.2E-20 170.2 5.6 67 64-133 27-93 (421)
18 PF00226 DnaJ: DnaJ domain; I 99.6 2E-15 4.4E-20 126.5 4.3 62 66-127 1-64 (64)
19 PRK14280 chaperone protein Dna 99.6 2.6E-15 5.7E-20 167.1 6.6 69 65-133 4-72 (376)
20 PRK14282 chaperone protein Dna 99.6 4E-15 8.6E-20 165.3 6.8 70 64-133 3-74 (369)
21 PRK14285 chaperone protein Dna 99.5 3.8E-15 8.2E-20 165.3 6.6 69 65-133 3-72 (365)
22 PRK14277 chaperone protein Dna 99.5 4.4E-15 9.5E-20 165.9 7.1 70 64-133 4-74 (386)
23 PRK14294 chaperone protein Dna 99.5 5.4E-15 1.2E-19 164.1 6.8 70 64-133 3-73 (366)
24 PRK14295 chaperone protein Dna 99.5 6.4E-15 1.4E-19 164.7 6.9 65 64-128 8-73 (389)
25 PRK14284 chaperone protein Dna 99.5 7E-15 1.5E-19 164.5 7.0 69 65-133 1-70 (391)
26 PRK14301 chaperone protein Dna 99.5 7E-15 1.5E-19 163.6 6.3 70 64-133 3-73 (373)
27 PRK14297 chaperone protein Dna 99.5 6.8E-15 1.5E-19 164.1 6.2 69 65-133 4-73 (380)
28 KOG0717 Molecular chaperone (D 99.5 5.7E-15 1.2E-19 163.1 5.1 72 63-134 6-79 (508)
29 KOG0550 Molecular chaperone (D 99.5 2.2E-14 4.7E-19 157.2 9.3 119 10-133 323-443 (486)
30 PRK10767 chaperone protein Dna 99.5 1.2E-14 2.7E-19 161.5 7.1 70 64-133 3-73 (371)
31 KOG0716 Molecular chaperone (D 99.5 7.3E-15 1.6E-19 153.7 4.8 71 64-134 30-101 (279)
32 PRK14281 chaperone protein Dna 99.5 1.3E-14 2.9E-19 162.6 6.7 69 65-133 3-72 (397)
33 PRK14292 chaperone protein Dna 99.5 1.5E-14 3.2E-19 160.9 6.1 69 64-132 1-69 (371)
34 TIGR02349 DnaJ_bact chaperone 99.5 1.6E-14 3.6E-19 159.5 6.1 68 66-133 1-68 (354)
35 KOG0691 Molecular chaperone (D 99.5 1.8E-14 3.9E-19 154.8 5.8 71 64-134 4-75 (296)
36 PRK14293 chaperone protein Dna 99.5 2.4E-14 5.3E-19 159.3 6.8 68 65-132 3-70 (374)
37 PRK14300 chaperone protein Dna 99.5 2E-14 4.4E-19 159.9 5.8 69 65-133 3-71 (372)
38 PRK10266 curved DNA-binding pr 99.5 2.2E-14 4.8E-19 155.7 5.7 67 65-131 4-70 (306)
39 PRK14290 chaperone protein Dna 99.5 3.7E-14 8.1E-19 157.4 6.6 69 65-133 3-73 (365)
40 PTZ00341 Ring-infected erythro 99.5 4.1E-14 8.8E-19 167.7 7.1 72 62-133 570-641 (1136)
41 KOG0715 Molecular chaperone (D 99.5 4.7E-14 1E-18 152.0 6.1 69 65-133 43-111 (288)
42 PRK14289 chaperone protein Dna 99.5 5.9E-14 1.3E-18 156.9 6.4 70 64-133 4-74 (386)
43 KOG0718 Molecular chaperone (D 99.5 4.3E-14 9.3E-19 156.2 5.2 72 63-134 7-82 (546)
44 KOG0720 Molecular chaperone (D 99.4 3.3E-14 7.2E-19 157.2 3.1 69 63-131 233-301 (490)
45 smart00271 DnaJ DnaJ molecular 99.4 1.2E-13 2.5E-18 114.0 5.4 57 65-121 1-59 (60)
46 KOG0719 Molecular chaperone (D 99.4 1.2E-13 2.7E-18 141.6 5.3 72 62-133 11-85 (264)
47 cd06257 DnaJ DnaJ domain or J- 99.4 3E-13 6.5E-18 109.5 5.7 54 66-119 1-55 (55)
48 KOG0721 Molecular chaperone (D 99.3 1.5E-12 3.2E-17 132.8 7.9 72 62-133 96-168 (230)
49 TIGR03835 termin_org_DnaJ term 99.3 1.5E-12 3.3E-17 151.8 7.3 69 65-133 2-70 (871)
50 COG2214 CbpA DnaJ-class molecu 99.3 1.3E-12 2.9E-17 130.4 5.6 68 63-130 4-73 (237)
51 PHA03102 Small T antigen; Revi 99.2 4.2E-12 9.2E-17 124.9 3.9 65 66-133 6-72 (153)
52 PRK01356 hscB co-chaperone Hsc 99.2 3.5E-11 7.5E-16 120.3 6.7 68 64-131 1-74 (166)
53 PRK05014 hscB co-chaperone Hsc 99.2 4E-11 8.7E-16 120.4 6.5 67 65-131 1-75 (171)
54 PRK00294 hscB co-chaperone Hsc 99.1 1.4E-10 3E-15 116.7 7.0 69 63-131 2-78 (173)
55 KOG0722 Molecular chaperone (D 99.1 8.4E-11 1.8E-15 122.1 4.2 71 61-131 29-99 (329)
56 PRK03578 hscB co-chaperone Hsc 99.0 2.2E-10 4.7E-15 115.6 6.4 68 64-131 5-80 (176)
57 KOG0714 Molecular chaperone (D 99.0 1.2E-10 2.6E-15 122.1 3.6 68 64-131 2-71 (306)
58 PTZ00100 DnaJ chaperone protei 98.9 1E-09 2.2E-14 103.4 3.6 52 64-118 64-115 (116)
59 PHA02624 large T antigen; Prov 98.8 4.7E-09 1E-13 122.0 7.7 59 65-126 11-71 (647)
60 KOG1150 Predicted molecular ch 98.8 2.9E-09 6.2E-14 107.5 4.8 64 64-127 52-117 (250)
61 PRK09430 djlA Dna-J like membr 98.8 3.6E-09 7.8E-14 113.3 4.3 55 65-119 200-262 (267)
62 PRK01773 hscB co-chaperone Hsc 98.6 4.3E-08 9.3E-13 98.8 6.8 68 64-131 1-76 (173)
63 COG5407 SEC63 Preprotein trans 98.6 2.3E-08 5E-13 110.9 4.8 69 63-131 96-170 (610)
64 TIGR00714 hscB Fe-S protein as 98.5 1.6E-07 3.5E-12 93.3 6.6 55 77-131 3-63 (157)
65 COG5269 ZUO1 Ribosome-associat 98.5 9.1E-08 2E-12 100.5 4.5 82 50-131 28-115 (379)
66 KOG0568 Molecular chaperone (D 97.5 5.9E-05 1.3E-09 78.2 3.3 56 64-119 46-102 (342)
67 KOG1789 Endocytosis protein RM 97.4 0.00023 4.9E-09 85.9 7.3 53 64-118 1280-1336(2235)
68 KOG0723 Molecular chaperone (D 96.6 0.0021 4.5E-08 59.9 4.1 48 70-120 61-108 (112)
69 KOG0431 Auxilin-like protein a 96.2 0.0066 1.4E-07 70.1 5.5 69 42-117 372-448 (453)
70 KOG3192 Mitochondrial J-type c 94.6 0.026 5.6E-07 56.2 2.9 70 62-131 5-82 (168)
71 COG1076 DjlA DnaJ-domain-conta 94.2 0.064 1.4E-06 54.4 5.0 54 64-117 112-173 (174)
72 TIGR02098 MJ0042_CXXC MJ0042 f 92.7 0.056 1.2E-06 41.1 1.3 33 190-222 3-38 (38)
73 COG1076 DjlA DnaJ-domain-conta 91.2 0.14 3E-06 51.9 2.6 66 66-131 2-75 (174)
74 PF13719 zinc_ribbon_5: zinc-r 89.1 0.18 4E-06 38.6 1.1 31 190-220 3-36 (37)
75 PF11926 DUF3444: Domain of un 89.1 0.78 1.7E-05 48.5 6.1 76 508-592 124-210 (217)
76 PF07719 TPR_2: Tetratricopept 86.4 1.9 4.1E-05 30.7 5.0 33 8-40 1-33 (34)
77 PF13717 zinc_ribbon_4: zinc-r 84.0 0.54 1.2E-05 35.9 1.2 31 190-220 3-36 (36)
78 KOG2041 WD40 repeat protein [G 84.0 7.7 0.00017 47.1 11.0 54 64-128 1047-1100(1189)
79 PF13428 TPR_14: Tetratricopep 83.2 2 4.3E-05 33.3 4.1 39 10-48 3-41 (44)
80 PF03656 Pam16: Pam16; InterP 82.4 1.5 3.2E-05 42.8 3.8 51 68-121 61-111 (127)
81 KOG0624 dsRNA-activated protei 81.4 5.1 0.00011 45.2 7.9 111 4-116 34-158 (504)
82 PF00515 TPR_1: Tetratricopept 80.3 4.6 0.0001 29.0 5.0 33 8-40 1-33 (34)
83 PF13414 TPR_11: TPR repeat; P 75.7 3.1 6.6E-05 34.5 3.3 45 7-51 2-46 (69)
84 PRK00464 nrdR transcriptional 75.0 1.5 3.2E-05 44.1 1.4 36 191-226 2-45 (154)
85 PF14205 Cys_rich_KTR: Cystein 68.7 3 6.4E-05 34.9 1.5 34 187-220 2-39 (55)
86 PRK00398 rpoP DNA-directed RNA 66.9 2.6 5.6E-05 33.6 0.9 31 191-223 5-35 (46)
87 PF14369 zf-RING_3: zinc-finge 64.3 3.6 7.8E-05 31.4 1.1 31 187-220 2-32 (35)
88 smart00531 TFIIE Transcription 62.5 4.3 9.4E-05 40.1 1.7 36 189-224 99-138 (147)
89 PLN03088 SGT1, suppressor of 62.3 50 0.0011 37.2 10.2 38 9-46 3-40 (356)
90 KOG0724 Zuotin and related mol 61.9 7.4 0.00016 43.2 3.6 55 76-130 3-62 (335)
91 PF14853 Fis1_TPR_C: Fis1 C-te 59.8 23 0.0005 29.4 5.2 44 12-55 5-48 (53)
92 TIGR00515 accD acetyl-CoA carb 59.7 6.5 0.00014 43.3 2.6 35 185-220 22-56 (285)
93 PF13181 TPR_8: Tetratricopept 59.1 19 0.0004 25.7 4.1 32 8-39 1-32 (34)
94 PRK05654 acetyl-CoA carboxylas 58.5 7.3 0.00016 43.0 2.7 35 185-220 23-57 (292)
95 PF13414 TPR_11: TPR repeat; P 57.9 8.2 0.00018 31.8 2.4 36 4-39 33-69 (69)
96 CHL00174 accD acetyl-CoA carbo 57.6 7.5 0.00016 43.0 2.6 35 185-220 34-68 (296)
97 PF14863 Alkyl_sulf_dimr: Alky 56.8 13 0.00028 36.9 3.8 61 8-68 70-130 (141)
98 PF13432 TPR_16: Tetratricopep 55.3 11 0.00025 30.7 2.8 39 13-51 2-40 (65)
99 COG3063 PilF Tfp pilus assembl 55.0 61 0.0013 35.1 8.6 73 4-98 30-103 (250)
100 PF13371 TPR_9: Tetratricopept 54.2 18 0.00039 30.1 3.9 37 15-51 2-38 (73)
101 PF10475 DUF2450: Protein of u 53.6 65 0.0014 35.3 9.1 86 9-120 128-213 (291)
102 PF13174 TPR_6: Tetratricopept 52.3 28 0.00061 24.2 4.1 30 11-40 3-32 (33)
103 COG0777 AccD Acetyl-CoA carbox 52.2 7.8 0.00017 42.4 1.6 35 185-220 24-58 (294)
104 PRK06266 transcription initiat 51.7 9.1 0.0002 39.3 1.9 32 191-223 119-150 (178)
105 TIGR00373 conserved hypothetic 49.2 11 0.00023 38.0 2.0 31 191-222 111-141 (158)
106 COG3097 Uncharacterized protei 48.4 21 0.00046 33.1 3.5 35 501-538 27-61 (106)
107 PF14559 TPR_19: Tetratricopep 47.9 18 0.00039 29.6 2.8 34 18-51 1-34 (68)
108 KOG0553 TPR repeat-containing 47.6 2.1E+02 0.0045 32.1 11.6 40 4-43 77-116 (304)
109 KOG4234 TPR repeat-containing 47.5 46 0.00099 35.5 6.2 40 4-43 91-130 (271)
110 smart00028 TPR Tetratricopepti 46.7 37 0.00081 21.6 3.9 30 11-40 4-33 (34)
111 PF14559 TPR_19: Tetratricopep 44.0 28 0.00062 28.4 3.5 42 8-49 25-66 (68)
112 KOG3824 Huntingtin interacting 43.7 63 0.0014 36.4 6.8 75 4-81 112-187 (472)
113 PF10263 SprT-like: SprT-like 42.1 13 0.00028 36.4 1.3 37 186-222 120-156 (157)
114 PF13446 RPT: A repeated domai 42.1 26 0.00055 29.5 2.9 25 67-91 7-31 (62)
115 PF03704 BTAD: Bacterial trans 41.2 1.1E+02 0.0024 29.1 7.5 42 10-51 64-105 (146)
116 COG1379 PHP family phosphoeste 40.6 6.5 0.00014 43.9 -1.1 34 186-220 243-276 (403)
117 PRK11827 hypothetical protein; 40.5 11 0.00024 32.2 0.5 30 189-220 8-37 (60)
118 PF05207 zf-CSL: CSL zinc fing 39.9 11 0.00023 31.6 0.3 33 186-219 15-50 (55)
119 COG5216 Uncharacterized conser 39.5 14 0.00029 31.6 0.8 32 186-218 19-53 (67)
120 PF07219 HemY_N: HemY protein 39.1 72 0.0016 29.8 5.7 43 5-48 56-98 (108)
121 PF09788 Tmemb_55A: Transmembr 38.1 24 0.00051 38.3 2.6 37 182-218 150-186 (256)
122 PF13432 TPR_16: Tetratricopep 37.9 68 0.0015 26.1 4.8 35 7-41 30-64 (65)
123 PF13371 TPR_9: Tetratricopept 36.8 70 0.0015 26.4 4.8 46 4-49 25-70 (73)
124 PF13176 TPR_7: Tetratricopept 36.1 40 0.00086 25.0 2.8 31 11-41 2-32 (36)
125 KOG2923 Uncharacterized conser 34.2 17 0.00037 31.5 0.6 33 186-219 19-54 (67)
126 cd04708 BAH_plantDCM_II BAH, o 32.5 74 0.0016 33.6 5.1 53 486-545 11-71 (202)
127 smart00834 CxxC_CXXC_SSSS Puta 32.4 21 0.00046 27.1 0.9 32 187-218 3-35 (41)
128 TIGR01206 lysW lysine biosynth 32.3 28 0.0006 29.2 1.6 36 191-226 4-39 (54)
129 PLN03088 SGT1, suppressor of 32.3 74 0.0016 35.8 5.5 81 8-90 36-118 (356)
130 PF13374 TPR_10: Tetratricopep 31.7 86 0.0019 22.7 4.1 34 8-41 2-35 (42)
131 PRK15174 Vi polysaccharide exp 30.9 1.5E+02 0.0033 36.2 8.2 117 12-130 288-417 (656)
132 PF09538 FYDLN_acid: Protein o 30.8 22 0.00048 33.8 0.8 27 191-221 11-38 (108)
133 PRK10866 outer membrane biogen 30.8 3.6E+02 0.0079 28.7 10.1 94 12-110 73-170 (243)
134 PRK05978 hypothetical protein; 30.6 23 0.0005 35.5 1.0 37 186-223 30-66 (148)
135 TIGR03504 FimV_Cterm FimV C-te 30.3 77 0.0017 25.4 3.7 25 12-36 3-27 (44)
136 PRK15359 type III secretion sy 30.2 1E+02 0.0022 29.8 5.4 44 7-50 57-100 (144)
137 PF11817 Foie-gras_1: Foie gra 29.6 1.2E+02 0.0026 32.3 6.3 48 3-51 173-220 (247)
138 KOG4234 TPR repeat-containing 28.9 41 0.00089 35.8 2.5 78 8-89 134-211 (271)
139 TIGR02552 LcrH_SycD type III s 28.1 4.7E+02 0.01 23.9 12.0 48 4-51 13-60 (135)
140 COG2835 Uncharacterized conser 27.9 22 0.00047 30.5 0.2 32 189-222 8-39 (60)
141 TIGR00244 transcriptional regu 27.7 29 0.00062 34.8 1.1 36 191-226 2-45 (147)
142 COG1327 Predicted transcriptio 27.2 22 0.00047 35.8 0.1 36 191-226 2-45 (156)
143 PF13453 zf-TFIIB: Transcripti 27.0 19 0.0004 28.0 -0.3 29 192-220 2-30 (41)
144 smart00439 BAH Bromo adjacent 26.9 1.4E+02 0.003 27.4 5.4 41 507-547 2-45 (120)
145 PF14687 DUF4460: Domain of un 26.7 1.2E+02 0.0025 29.1 4.9 44 76-119 5-53 (112)
146 PF14353 CpXC: CpXC protein 26.7 37 0.0008 32.5 1.6 12 209-220 38-49 (128)
147 KOG0543 FKBP-type peptidyl-pro 26.1 1.3E+02 0.0027 34.9 5.9 78 12-93 261-338 (397)
148 PF03966 Trm112p: Trm112p-like 26.1 24 0.00053 30.3 0.2 18 204-221 48-65 (68)
149 KOG0543 FKBP-type peptidyl-pro 26.0 70 0.0015 36.9 3.8 44 10-53 293-336 (397)
150 PF13512 TPR_18: Tetratricopep 25.9 6.8E+02 0.015 25.1 11.3 74 8-101 10-84 (142)
151 PRK10866 outer membrane biogen 25.1 7.2E+02 0.016 26.5 11.2 71 8-98 32-103 (243)
152 PF13525 YfiO: Outer membrane 25.0 7.5E+02 0.016 25.2 12.2 86 6-114 3-89 (203)
153 PRK10370 formate-dependent nit 24.5 1.1E+02 0.0023 31.6 4.6 40 6-45 71-110 (198)
154 TIGR00990 3a0801s09 mitochondr 24.2 7.5E+02 0.016 29.7 12.3 34 7-40 126-159 (615)
155 TIGR02552 LcrH_SycD type III s 24.1 2.5E+02 0.0055 25.8 6.7 45 8-52 51-95 (135)
156 PF04505 Dispanin: Interferon- 24.0 82 0.0018 28.4 3.2 24 15-38 44-67 (82)
157 smart00731 SprT SprT homologue 23.8 43 0.00092 32.9 1.5 35 186-220 109-144 (146)
158 PF14435 SUKH-4: SUKH-4 immuni 23.6 92 0.002 31.2 3.9 59 556-614 32-105 (179)
159 PF14346 DUF4398: Domain of un 23.1 1.5E+02 0.0033 27.2 5.0 32 6-37 43-74 (103)
160 COG1996 RPC10 DNA-directed RNA 22.5 59 0.0013 26.9 1.8 34 190-225 7-40 (49)
161 cd00189 TPR Tetratricopeptide 22.5 2.1E+02 0.0046 22.4 5.2 32 11-42 3-34 (100)
162 PF11833 DUF3353: Protein of u 22.3 1.2E+02 0.0027 31.6 4.6 38 74-118 1-38 (194)
163 PRK10370 formate-dependent nit 22.2 1.6E+02 0.0035 30.2 5.5 44 8-51 107-153 (198)
164 smart00659 RPOLCX RNA polymera 22.2 67 0.0015 25.8 2.0 30 191-223 4-33 (44)
165 PF13512 TPR_18: Tetratricopep 21.9 3.9E+02 0.0085 26.7 7.7 80 11-97 50-132 (142)
166 cd04370 BAH BAH, or Bromo Adja 21.9 1.6E+02 0.0034 26.9 4.8 43 506-548 3-49 (123)
167 PF03646 FlaG: FlaG protein; 21.6 26 0.00056 32.5 -0.5 18 667-684 79-96 (107)
168 PF11331 DUF3133: Protein of u 20.9 42 0.0009 27.4 0.6 31 189-219 6-41 (46)
169 COG0484 DnaJ DnaJ-class molecu 20.9 84 0.0018 36.1 3.2 29 186-220 180-208 (371)
170 COG5552 Uncharacterized conser 20.7 2.1E+02 0.0046 25.8 4.9 58 67-128 5-62 (88)
171 PF14561 TPR_20: Tetratricopep 20.6 5.5E+02 0.012 23.3 7.9 48 6-53 20-70 (90)
172 TIGR00686 phnA alkylphosphonat 20.6 33 0.00071 32.7 -0.0 29 191-222 4-32 (109)
173 TIGR02300 FYDLN_acid conserved 20.6 45 0.00097 32.7 0.9 11 209-219 26-36 (129)
174 KOG0714 Molecular chaperone (D 20.5 20 0.00043 37.6 -1.7 113 5-131 2-152 (306)
175 KOG0547 Translocase of outer m 20.4 1.7E+02 0.0037 35.0 5.5 48 6-53 113-160 (606)
176 COG4235 Cytochrome c biogenesi 20.3 2.2E+02 0.0048 31.6 6.2 94 6-118 154-254 (287)
177 PF08274 PhnA_Zn_Ribbon: PhnA 20.2 37 0.0008 25.3 0.2 24 191-217 4-27 (30)
178 PF09723 Zn-ribbon_8: Zinc rib 20.2 45 0.00097 26.2 0.6 31 187-217 3-34 (42)
179 COG1096 Predicted RNA-binding 20.0 50 0.0011 34.4 1.1 28 187-218 147-174 (188)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=2.3e-83 Score=656.97 Aligned_cols=212 Identities=53% Similarity=0.982 Sum_probs=203.0
Q ss_pred CCCCCceeccCCCCCCCcCccccCCCCCCCEEEEecCCCCCccceeEEEEEeccCCceEEEEecccCCCCCccccccccC
Q 003686 482 DADPTSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPFKMRISWLNSKSNNELAPLNWVGS 561 (803)
Q Consensus 482 ~~~~~~~~~pd~dF~dFd~dR~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~~Fkl~iswLe~~~~~e~~~~~W~~~ 561 (803)
...+..|+||||||||||++|++++|++|||||+||+.||||||||||+||++.+||+|||+|||++|++++ +++|+++
T Consensus 3 ~~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~-~~~w~~~ 81 (217)
T PF11926_consen 3 NSSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEE-EIRWEDE 81 (217)
T ss_pred CCCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCccc-ceeeeec
Confidence 346789999999999999999999999999999999999999999999999987799999999999999985 8999999
Q ss_pred CCceeeeeeEeCceeeeccCCceeEEEE-eEecCCccEEEecCCCcEeEEecCCCCCCCCCCCCCccceeeEEEEeccCC
Q 003686 562 GFPKTSGDFWRGKYEVYDSLNSFSHKVR-WAKGTRGAIHIYPRKGEVWALYRNWRADWSECTPDEVIHKYDMVEVLEDYN 640 (803)
Q Consensus 562 ~lpv~CG~F~~~~~~~~~~~~~FSH~v~-~~~g~~~~y~IyPrkGEvWAlYk~Ws~~w~~~~~~~~~~~YdiVEVL~d~~ 640 (803)
+|||+||+|++|++.++.++++|||+|. +..|.++.|+|||||||||||||||+++|+.+++++..|+|||||||+||+
T Consensus 82 ~~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~ 161 (217)
T PF11926_consen 82 GLPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYS 161 (217)
T ss_pred CCceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCC
Confidence 9999999999999999999999999985 777889999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeeeeeCCcccceeeccCCC-ceEEecCCCccceeccccceeecCCCC
Q 003686 641 EKTGIGVVPLLKVPRFKTVFRQHLEQS-KRRTIPREEIFRFSHRVPSYLLTGQEG 694 (803)
Q Consensus 641 ~~~gv~V~~L~Kv~Gf~svF~~~~~~~-~~~~Ip~~el~rFSHqIPs~rltg~e~ 694 (803)
++.||.|+||+||+||+|||+|..+.+ .++.||++||+|||||||||||||+|+
T Consensus 162 ~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~ 216 (217)
T PF11926_consen 162 EEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEG 216 (217)
T ss_pred ccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccC
Confidence 999999999999999999999997665 689999999999999999999999996
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.7e-22 Score=216.32 Aligned_cols=72 Identities=40% Similarity=0.644 Sum_probs=68.9
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcCC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRYG 135 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~~ 135 (803)
..|||+||||+++|+.+|||||||+||++||||+|+ .+.|++.|++|++||+|||||+||+.||+++.....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 579999999999999999999999999999999999 899999999999999999999999999999987663
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.7e-19 Score=187.93 Aligned_cols=73 Identities=38% Similarity=0.585 Sum_probs=68.9
Q ss_pred cCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
...+|||+||||+++|+..+||+|||||||+||||||+. |.|.+.|+.|+.||+|||||.+|..||..+..+.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 357999999999999999999999999999999999986 8999999999999999999999999999996555
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.5e-18 Score=183.55 Aligned_cols=69 Identities=42% Similarity=0.637 Sum_probs=65.3
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
...||.||||.++|+.+|||||||+||++||||||+. +.+.|+.|.+||+|||||+||..||+++..+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 4679999999999999999999999999999999976 88999999999999999999999999997665
No 5
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=2.7e-16 Score=168.61 Aligned_cols=124 Identities=28% Similarity=0.308 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHH
Q 003686 5 KDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQM 84 (803)
Q Consensus 5 k~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKk 84 (803)
.+++.-++++|+.+|...+|+.|...+.+|+.+.++...+..-|..+.-+. +..+.+|||+||||.++|+..+|.|
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk----kqs~kRDYYKILGVkRnAsKqEI~K 413 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK----KQSGKRDYYKILGVKRNASKQEITK 413 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH----HHhccchHHHHhhhcccccHHHHHH
Confidence 467889999999999999999999999999999999988888888877655 5578899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 85 QYRKLALIIHPDKSTSA----GAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 85 aYRkLal~~HPDKn~~~----gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
|||+||+++|||...+. .|+..|..|..|-+||+||++|..||..-++
T Consensus 414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 99999999999988764 4899999999999999999999999987653
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=8.8e-17 Score=178.48 Aligned_cols=70 Identities=40% Similarity=0.674 Sum_probs=65.5
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|++.|++|++||+||+||.+|+.||+++...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 369999999999999999999999999999999997 4679999999999999999999999999988643
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=9e-17 Score=178.59 Aligned_cols=69 Identities=41% Similarity=0.573 Sum_probs=66.0
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.||+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 469999999999999999999999999999999998888999999999999999999999999998764
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=4.8e-16 Score=173.86 Aligned_cols=68 Identities=43% Similarity=0.687 Sum_probs=64.5
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|++.|+.|++||++||||.||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999997 46899999999999999999999999999874
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.2e-15 Score=169.74 Aligned_cols=70 Identities=39% Similarity=0.584 Sum_probs=66.1
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|++.|+.|++||++|+||.+|+.||+++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 3699999999999999999999999999999999988889999999999999999999999999988643
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.1e-15 Score=169.95 Aligned_cols=70 Identities=43% Similarity=0.645 Sum_probs=65.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|++.|++|++||+||+||.+|..||+++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 369999999999999999999999999999999997 4679999999999999999999999999987643
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.7e-15 Score=168.81 Aligned_cols=68 Identities=37% Similarity=0.537 Sum_probs=65.2
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||++|+||.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999998753
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.3e-15 Score=169.88 Aligned_cols=70 Identities=37% Similarity=0.573 Sum_probs=66.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 3699999999999999999999999999999999998889999999999999999999999999988644
No 13
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.4e-15 Score=169.29 Aligned_cols=70 Identities=40% Similarity=0.646 Sum_probs=66.2
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.+++.|++|++||++|+||.+|+.||+++...
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 4699999999999999999999999999999999988889999999999999999999999999987643
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.7e-15 Score=163.32 Aligned_cols=69 Identities=39% Similarity=0.610 Sum_probs=66.0
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+|+.+|..||+++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 369999999999999999999999999999999998888999999999999999999999999998764
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.8e-15 Score=168.52 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=66.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|++.|+.|++||++|+|+.+|..||+++...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 5799999999999999999999999999999999988889999999999999999999999999987643
No 16
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-15 Score=168.12 Aligned_cols=70 Identities=40% Similarity=0.590 Sum_probs=66.3
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+.+.+++.|++|++||++|+||.+|..||+++...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 3699999999999999999999999999999999988889999999999999999999999999988644
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.56 E-value=1.9e-15 Score=170.22 Aligned_cols=67 Identities=33% Similarity=0.490 Sum_probs=62.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||||+. .++|++|++||++|+||.+|+.||+++...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 5799999999999999999999999999999999853 589999999999999999999999987643
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.56 E-value=2e-15 Score=126.51 Aligned_cols=62 Identities=44% Similarity=0.720 Sum_probs=59.6
Q ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChH--HHHHHHHHHHHHHHcCChhhHHHhh
Q 003686 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG--AEAAFQILTEAWNILSDKSKRLDYD 127 (803)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~g--A~~aFk~I~eAy~vLsDp~kR~~YD 127 (803)
|||+||||+++++.++||++|++|++.+|||++.... +++.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988755 9999999999999999999999998
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.6e-15 Score=167.13 Aligned_cols=69 Identities=41% Similarity=0.674 Sum_probs=66.0
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|++.|++|++||++|+||.+|..||+++...
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 699999999999999999999999999999999988889999999999999999999999999988643
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4e-15 Score=165.34 Aligned_cols=70 Identities=36% Similarity=0.546 Sum_probs=64.9
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|++.|++|++||++|+||.+|..||+++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 3699999999999999999999999999999999974 568999999999999999999999999987543
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.8e-15 Score=165.29 Aligned_cols=69 Identities=38% Similarity=0.632 Sum_probs=64.8
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|++|++||++|+|+.+|..||+++...
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 699999999999999999999999999999999974 678899999999999999999999999988643
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.4e-15 Score=165.90 Aligned_cols=70 Identities=41% Similarity=0.643 Sum_probs=65.3
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||++|+|+.+|..||+++...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 4699999999999999999999999999999999974 678999999999999999999999999987643
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.4e-15 Score=164.09 Aligned_cols=70 Identities=41% Similarity=0.610 Sum_probs=65.5
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. +.+++.|+.|++||++|+||.+|+.||+++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 4799999999999999999999999999999999974 678999999999999999999999999988643
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=6.4e-15 Score=164.73 Aligned_cols=65 Identities=45% Similarity=0.717 Sum_probs=62.0
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhh
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQ 128 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~ 128 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|++|++||++|+||.+|..||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3699999999999999999999999999999999974 6789999999999999999999999998
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=7e-15 Score=164.52 Aligned_cols=69 Identities=43% Similarity=0.695 Sum_probs=64.7
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|+.|++||++|+|+.+|..||+++...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 489999999999999999999999999999999984 679999999999999999999999999988643
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=7e-15 Score=163.64 Aligned_cols=70 Identities=40% Similarity=0.639 Sum_probs=65.2
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|+.|++||+||+||.+|..||+++...
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 3699999999999999999999999999999999974 678899999999999999999999999987643
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.8e-15 Score=164.08 Aligned_cols=69 Identities=42% Similarity=0.682 Sum_probs=65.0
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|++|++||++|+||.+|..||+++...
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 699999999999999999999999999999999974 678999999999999999999999999987643
No 28
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.7e-15 Score=163.09 Aligned_cols=72 Identities=43% Similarity=0.643 Sum_probs=66.6
Q ss_pred CCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
..++||+||||.++|++.+||++||+|||+||||||+. ..|.+.|++|+.||+|||||..|+.||..+..-+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 45789999999999999999999999999999999987 5788999999999999999999999999886444
No 29
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-14 Score=157.22 Aligned_cols=119 Identities=34% Similarity=0.466 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHHHHH
Q 003686 10 RARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKL 89 (803)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYRkL 89 (803)
..+..|+.+|..++|.+|.+++.+|.++.-+ ..+.++|..+..-| +.++..|||.||||.+.|++.+||++||++
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL----kkSkRkd~ykilGi~~~as~~eikkayrk~ 397 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL----KKSKRKDWYKILGISRNASDDEIKKAYRKL 397 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH----HHhhhhhHHHHhhhhhhcccchhhhHHHHH
Confidence 4567889999999999999999999999988 56788888887766 567789999999999999999999999999
Q ss_pred HHHhCCCCCCC--hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 90 ALIIHPDKSTS--AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 90 al~~HPDKn~~--~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
||.+|||++.. ..++..|+.|.+||.+|+||.+|..||..-...
T Consensus 398 AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 398 ALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred HHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 99999999965 478999999999999999999999999876544
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=161.48 Aligned_cols=70 Identities=41% Similarity=0.673 Sum_probs=65.2
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~-~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|++.|++|++||++|+|+.+|..||+++...
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 369999999999999999999999999999999997 4678999999999999999999999999987643
No 31
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.3e-15 Score=153.71 Aligned_cols=71 Identities=39% Similarity=0.565 Sum_probs=67.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
..|+|+|||++++|+.++|||+||+|++++|||++++ |.+...|++|++||+||+||.+|..||..+....
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 5789999999999999999999999999999999987 8899999999999999999999999999987655
No 32
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.3e-14 Score=162.59 Aligned_cols=69 Identities=45% Similarity=0.689 Sum_probs=64.8
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|++|++||++|+|+.+|..||+++...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 699999999999999999999999999999999974 678899999999999999999999999987643
No 33
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.5e-14 Score=160.89 Aligned_cols=69 Identities=42% Similarity=0.720 Sum_probs=65.9
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
+.|||+||||+++|+.++||+|||+||+++|||+++.+.+++.|++|++||++|+||.+|+.||.++..
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 469999999999999999999999999999999999888999999999999999999999999998764
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.50 E-value=1.6e-14 Score=159.50 Aligned_cols=68 Identities=43% Similarity=0.685 Sum_probs=64.6
Q ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
|||+||||+++|+.++||+|||+||++||||+|+.+.+++.|++|++||++|+|+.+|..||.++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999987789999999999999999999999999987643
No 35
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-14 Score=154.81 Aligned_cols=71 Identities=41% Similarity=0.630 Sum_probs=67.3
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
..|||.||||..+|+..+|+++||+.||++|||||+. |.|.+.|+.|.+||+||+|+.+|..||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 6799999999999999999999999999999999985 8899999999999999999999999999987554
No 36
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.4e-14 Score=159.34 Aligned_cols=68 Identities=38% Similarity=0.660 Sum_probs=65.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCC
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
.|||+||||+++|+.++||+|||+||++||||+|+.+.+++.|++|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999998888999999999999999999999999998764
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2e-14 Score=159.92 Aligned_cols=69 Identities=33% Similarity=0.594 Sum_probs=65.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||++||||+++.+.++++|++|++||++|+|+.+|..||+++...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 699999999999999999999999999999999987789999999999999999999999999987643
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.48 E-value=2.2e-14 Score=155.69 Aligned_cols=67 Identities=45% Similarity=0.777 Sum_probs=64.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
.|||+||||+++|+.++||++||+||++||||+|+.+.+++.|+.|++||++|+|+.+|..||..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999888899999999999999999999999999763
No 39
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.7e-14 Score=157.42 Aligned_cols=69 Identities=41% Similarity=0.640 Sum_probs=64.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||+|||+||+++|||+|+. ..|++.|+.|++||++|+|+.+|..||.++...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 699999999999999999999999999999999975 368999999999999999999999999987643
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.47 E-value=4.1e-14 Score=167.74 Aligned_cols=72 Identities=29% Similarity=0.324 Sum_probs=67.1
Q ss_pred cCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
-...|||+||||+++|+..+||+|||+||+++|||||+...|...|+.|++||+|||||.+|..||.++..+
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 356899999999999999999999999999999999987778899999999999999999999999987643
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-14 Score=151.96 Aligned_cols=69 Identities=39% Similarity=0.574 Sum_probs=66.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+..|||+||++||++||||.|...+|.+.|+.|.+||++|+|+++|..||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 399999999999999999999999999999999999999999999999999999999999999988754
No 42
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=5.9e-14 Score=156.90 Aligned_cols=70 Identities=41% Similarity=0.607 Sum_probs=65.2
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|++.|+.|++||++|+||.+|..||+++...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 4799999999999999999999999999999999974 679999999999999999999999999987643
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.3e-14 Score=156.21 Aligned_cols=72 Identities=36% Similarity=0.574 Sum_probs=66.5
Q ss_pred CCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHHHcCChhhHHHhhhccCCcC
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSA----GAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~----gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
.+.|||.+|+|+++|+.++|++|||++++++||||..++ .|++.|.+|.+||+|||||.+|+.||.++..+.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 356999999999999999999999999999999999763 589999999999999999999999999887655
No 44
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.3e-14 Score=157.20 Aligned_cols=69 Identities=35% Similarity=0.620 Sum_probs=66.8
Q ss_pred CCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
..+|+|.||||++++++++|||.|||||.+.|||||..++|+++|+.|..||++|+|+.+|..||..+.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999998774
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.44 E-value=1.2e-13 Score=114.00 Aligned_cols=57 Identities=44% Similarity=0.693 Sum_probs=54.2
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHcCChh
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST--SAGAEAAFQILTEAWNILSDKS 121 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~--~~gA~~aFk~I~eAy~vLsDp~ 121 (803)
.|||+||||+++++.++||++||+|++.+|||++. .+.+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 6789999999999999999985
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=141.60 Aligned_cols=72 Identities=44% Similarity=0.603 Sum_probs=65.6
Q ss_pred cCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS---AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~---~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
....|+|+||||.++|++.+||+|||+|||++|||++.. ..+.+.|+.|+.||.||+|.++|+.||..+...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 345699999999999999999999999999999999952 568899999999999999999999999988643
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.40 E-value=3e-13 Score=109.51 Aligned_cols=54 Identities=52% Similarity=0.845 Sum_probs=52.0
Q ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCC
Q 003686 66 DWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSD 119 (803)
Q Consensus 66 D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsD 119 (803)
|||+||||+++++.++||++||+|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999987 7899999999999999987
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-12 Score=132.80 Aligned_cols=72 Identities=32% Similarity=0.610 Sum_probs=67.0
Q ss_pred cCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-AGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~-~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
....|+|+||||+|++++.|||+|||+|++++||||++. .+.++.|..|++||+.|+|+..|..|..+++..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 356899999999999999999999999999999999988 678888999999999999999999999998744
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.32 E-value=1.5e-12 Score=151.76 Aligned_cols=69 Identities=36% Similarity=0.624 Sum_probs=65.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.|||+||||+++|+.++||++||+|++++|||++..+.+..+|+.|++||++|+||.+|+.||.++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 599999999999999999999999999999999988888899999999999999999999999987644
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-12 Score=130.36 Aligned_cols=68 Identities=44% Similarity=0.750 Sum_probs=63.6
Q ss_pred CCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChH--HHHHHHHHHHHHHHcCChhhHHHhhhcc
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG--AEAAFQILTEAWNILSDKSKRLDYDQKR 130 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~g--A~~aFk~I~eAy~vLsDp~kR~~YD~~~ 130 (803)
...|||+||||.++|+..+|+++||+||+++|||+++... +++.|+.|++||.+|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3579999999999999999999999999999999998643 8999999999999999999999999864
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.24 E-value=4.2e-12 Score=124.95 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=60.0
Q ss_pred ceEEEeccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccCCc
Q 003686 66 DWYRVLGVEPLA--DDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGR 133 (803)
Q Consensus 66 D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~~~ 133 (803)
.+|+||||+++| +.++||+|||++|+++||||+ +.++.|+.|++||++|+|+.+|..||..+...
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 478999999999 999999999999999999997 56789999999999999999999999987533
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=3.5e-11 Score=120.31 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=59.7
Q ss_pred CcceEEEeccCCC--CCHHHHHHHHHHHHHHhCCCCCCChH----HHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 64 MVDWYRVLGVEPL--ADDETIQMQYRKLALIIHPDKSTSAG----AEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 64 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~g----A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
+.|||+||||++. +|..+|+++||+|++++|||++.... +...|..|++||.+|+||.+|+.|+..+.
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 3689999999996 78999999999999999999986532 33458899999999999999999998875
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.16 E-value=4e-11 Score=120.38 Aligned_cols=67 Identities=24% Similarity=0.417 Sum_probs=59.4
Q ss_pred cceEEEeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 65 VDWYRVLGVEPL--ADDETIQMQYRKLALIIHPDKSTSA------GAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 65 ~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~------gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
.|||+||||++. +|..+|+++||+|++++|||+.... .+.+.|..|++||++|+||.+|+.|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 6889999999999999999997542 256789999999999999999999998664
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.09 E-value=1.4e-10 Score=116.69 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=61.6
Q ss_pred CCcceEEEeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 63 GMVDWYRVLGVEPL--ADDETIQMQYRKLALIIHPDKSTSA------GAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~------gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
+..|||++|||++. .|..+|+++||+|++++|||++... .+...|..|++||.+|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 56899999999997 6789999999999999999998642 256789999999999999999999998775
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.4e-11 Score=122.12 Aligned_cols=71 Identities=32% Similarity=0.517 Sum_probs=67.5
Q ss_pred ccCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 61 INGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 61 ~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
-.|..|.|+||||.+.++..+|.++||+||+++|||+++.+.+...|+.|..||++|.|.+.|..||-...
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999998774
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=2.2e-10 Score=115.59 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=59.2
Q ss_pred CcceEEEeccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-hH-----HHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 64 MVDWYRVLGVEPL--ADDETIQMQYRKLALIIHPDKSTS-AG-----AEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 64 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~-~g-----A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
..|||+||||++. +|..+|+++||+|++++|||++.. +. +.+.+..|++||.+|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 689999999999999999999864 22 33446999999999999999999998765
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-10 Score=122.05 Aligned_cols=68 Identities=47% Similarity=0.700 Sum_probs=63.8
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSA--GAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~--gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
..|||.||+|.+.|+.++|++|||+||+.+|||+|+.+ .++..|++|.+||++|+|+.+|..||+.+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 47999999999999999999999999999999999877 666689999999999999999999999987
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.88 E-value=1e-09 Score=103.42 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=48.2
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS 118 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLs 118 (803)
..++|+||||+++++.++||++||+|++.+|||+. |+.+.|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999985 56789999999999984
No 59
>PHA02624 large T antigen; Provisional
Probab=98.84 E-value=4.7e-09 Score=121.96 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=56.3
Q ss_pred cceEEEeccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHh
Q 003686 65 VDWYRVLGVEPLA--DDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDY 126 (803)
Q Consensus 65 ~D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~Y 126 (803)
.++|+||||+++| +..+||+|||+||+++|||++ |+++.|+.|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 5899999999999 999999999999999999996 5678999999999999999999999
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.9e-09 Score=107.53 Aligned_cols=64 Identities=33% Similarity=0.619 Sum_probs=59.4
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHcCChhhHHHhh
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--AGAEAAFQILTEAWNILSDKSKRLDYD 127 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--~gA~~aFk~I~eAy~vLsDp~kR~~YD 127 (803)
..|+|+||+|+|..+.++||+.||+|+++.|||||++ +.|..||-.|.+||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6899999999999999999999999999999999986 689999999999999999998766544
No 61
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.79 E-value=3.6e-09 Score=113.30 Aligned_cols=55 Identities=36% Similarity=0.518 Sum_probs=50.4
Q ss_pred cceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHHHHcCC
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--------AGAEAAFQILTEAWNILSD 119 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--------~gA~~aFk~I~eAy~vLsD 119 (803)
.|+|+||||++++|.++||++||+|++++|||++.. +.+.+.|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999743 3578999999999999974
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.65 E-value=4.3e-08 Score=98.83 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=60.2
Q ss_pred CcceEEEeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 64 MVDWYRVLGVEPL--ADDETIQMQYRKLALIIHPDKSTSA------GAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 64 ~~D~Y~ILgV~~~--A~~~eIKkaYRkLal~~HPDKn~~~------gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
+.|||++|||++. .|...++++||+|.+.+|||+.... -+.+.-.+||+||.+|.||.+|+.|=..+.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 3699999999996 7999999999999999999997542 245678999999999999999999988775
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.63 E-value=2.3e-08 Score=110.94 Aligned_cols=69 Identities=29% Similarity=0.558 Sum_probs=64.2
Q ss_pred CCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS------AGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~------~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
...|+|+|||++.+++..+||++||+|+.++||||.+. ...++.++.|++||..|+|...|..|-.++.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 56899999999999999999999999999999999865 4578999999999999999999999998875
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.51 E-value=1.6e-07 Score=93.28 Aligned_cols=55 Identities=27% Similarity=0.408 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 77 ADDETIQMQYRKLALIIHPDKSTSA------GAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 77 A~~~eIKkaYRkLal~~HPDKn~~~------gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
.|..+|+++||+|++++|||+.... .+...|..|++||.+|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4788999999999999999996432 267889999999999999999999999885
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.1e-08 Score=100.54 Aligned_cols=82 Identities=27% Similarity=0.423 Sum_probs=69.6
Q ss_pred HHHHHHHhcccccCCcceEEEeccCC---CCCHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHHHcCChhhH
Q 003686 50 ILDVHISASKRINGMVDWYRVLGVEP---LADDETIQMQYRKLALIIHPDKST---SAGAEAAFQILTEAWNILSDKSKR 123 (803)
Q Consensus 50 ~~dv~laa~~k~~~~~D~Y~ILgV~~---~A~~~eIKkaYRkLal~~HPDKn~---~~gA~~aFk~I~eAy~vLsDp~kR 123 (803)
+++.|+.-..+-.+..|+|.+|||+. -|++.+|.++.++..+.||||+.. +.+..+.|++|+.||++|+|+.+|
T Consensus 28 ~~~~~~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R 107 (379)
T COG5269 28 VLNLYTREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLR 107 (379)
T ss_pred HHHHHHhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHH
Confidence 33444555556678899999999987 588999999999999999999973 356899999999999999999999
Q ss_pred HHhhhccC
Q 003686 124 LDYDQKRN 131 (803)
Q Consensus 124 ~~YD~~~~ 131 (803)
..||...-
T Consensus 108 ~qyDS~df 115 (379)
T COG5269 108 LQYDSNDF 115 (379)
T ss_pred hhcccccc
Confidence 99998653
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=5.9e-05 Score=78.25 Aligned_cols=56 Identities=30% Similarity=0.615 Sum_probs=51.5
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-HcCC
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWN-ILSD 119 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~-vLsD 119 (803)
-+.+|.||||..+|+.++++.+|.+|++++|||........+.|..|.+||. +|+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999888788899999999999 7763
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00023 Score=85.95 Aligned_cols=53 Identities=30% Similarity=0.413 Sum_probs=46.0
Q ss_pred CcceEEEeccCCC----CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcC
Q 003686 64 MVDWYRVLGVEPL----ADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS 118 (803)
Q Consensus 64 ~~D~Y~ILgV~~~----A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLs 118 (803)
.-+-|+||.|+-+ -+.+.||+||+|||.+||||||+ .--+.|..|++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 3467999999863 34589999999999999999995 66789999999999998
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0021 Score=59.91 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=42.2
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 003686 70 VLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDK 120 (803)
Q Consensus 70 ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp 120 (803)
||||.++++.+.||.++||+-+..|||+..+|-- -..|+||+++|...
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl---AsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL---ASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH---HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999866643 34699999999643
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.15 E-value=0.0066 Score=70.12 Aligned_cols=69 Identities=32% Similarity=0.575 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChH--------HHHHHHHHHHH
Q 003686 42 DGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAG--------AEAAFQILTEA 113 (803)
Q Consensus 42 ~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~g--------A~~aFk~I~eA 113 (803)
.+|+.||.++...|=. +-.| .=+++.--.+.++|||+|||..|.+||||.+..| ++..|-++.+|
T Consensus 372 ~NIRALLSTLh~VLW~------es~W-qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ea 444 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWP------ESGW-QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEA 444 (453)
T ss_pred ccHHHHHHHHhHhhcC------ccCc-ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHH
Confidence 4588888888765522 1222 2234555678999999999999999999987643 67778888888
Q ss_pred HHHc
Q 003686 114 WNIL 117 (803)
Q Consensus 114 y~vL 117 (803)
|...
T Consensus 445 wn~f 448 (453)
T KOG0431|consen 445 WNKF 448 (453)
T ss_pred HHhh
Confidence 8754
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.026 Score=56.17 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=56.9
Q ss_pred cCCcceEEEeccCC--CCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 62 NGMVDWYRVLGVEP--LADDETIQMQYRKLALIIHPDKSTS------AGAEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~--~A~~~eIKkaYRkLal~~HPDKn~~------~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
....+||.++|... -.++.-+.--|.-....+|||+... .-|.+....|++||.+|.||-+|+.|=....
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44578999998765 4566667778999999999999532 2467779999999999999999999998775
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.064 Score=54.36 Aligned_cols=54 Identities=37% Similarity=0.501 Sum_probs=47.1
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHHHHc
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS--------AGAEAAFQILTEAWNIL 117 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~--------~gA~~aFk~I~eAy~vL 117 (803)
..|+|.+|++...++..+|+++||++....|||+... ..+.+.++.|++||..+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999999998643 34778899999998753
No 72
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=92.72 E-value=0.056 Score=41.13 Aligned_cols=33 Identities=24% Similarity=0.655 Sum_probs=28.1
Q ss_pred EeCCCccchhhHHHhhccc---cccCCccCCceEEE
Q 003686 190 TTCNACKMHFEYLRTYLNN---NLVCPQCRQLFLAV 222 (803)
Q Consensus 190 T~C~~C~~~yeY~r~yln~---~L~C~~C~~~F~A~ 222 (803)
..|++|+..|.+....+.. .++|++|+..|.|+
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 5799999999999877643 59999999999873
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.14 Score=51.89 Aligned_cols=66 Identities=26% Similarity=0.355 Sum_probs=52.8
Q ss_pred ceEEEeccCCCC--CHHHHHHHHHHHHHHhCCCCCCChH------HHHHHHHHHHHHHHcCChhhHHHhhhccC
Q 003686 66 DWYRVLGVEPLA--DDETIQMQYRKLALIIHPDKSTSAG------AEAAFQILTEAWNILSDKSKRLDYDQKRN 131 (803)
Q Consensus 66 D~Y~ILgV~~~A--~~~eIKkaYRkLal~~HPDKn~~~g------A~~aFk~I~eAy~vLsDp~kR~~YD~~~~ 131 (803)
||+..+|..+.+ +.+.++.+|+.+.+.+|||+....+ +-+.+..++.||.+|.||-+|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455666666644 4678999999999999999986533 34578999999999999999999987654
No 74
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=89.13 E-value=0.18 Score=38.56 Aligned_cols=31 Identities=29% Similarity=0.763 Sum_probs=27.2
Q ss_pred EeCCCccchhhHHHhhc---cccccCCccCCceE
Q 003686 190 TTCNACKMHFEYLRTYL---NNNLVCPQCRQLFL 220 (803)
Q Consensus 190 T~C~~C~~~yeY~r~yl---n~~L~C~~C~~~F~ 220 (803)
+.||.|...|+....-| ...++|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 68999999999998854 46999999999886
No 75
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=89.09 E-value=0.78 Score=48.45 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=45.4
Q ss_pred CCCCEEEEecC---------CCCCccceeEEEEEec--cCCceEEEEecccCCCCCccccccccCCCceeeeeeEeCcee
Q 003686 508 SENQVWAAYDD---------DDGMPRYYAMIQSVIS--LKPFKMRISWLNSKSNNELAPLNWVGSGFPKTSGDFWRGKYE 576 (803)
Q Consensus 508 ~~gQIWA~Yd~---------~DgmPR~Ya~I~kV~~--~~~Fkl~iswLe~~~~~e~~~~~W~~~~lpv~CG~F~~~~~~ 576 (803)
+.|.|||||-+ .|-.+.-|..+. |++ ...--+.|..|.-..-.. ....+...+ ..+.|.|.+.+
T Consensus 124 rkGEvWAlYknW~~~w~~~~~~~~~~~YdiVE-Vl~d~~~~~gi~V~~L~Kv~Gf~-svF~~~~~~---~~~~~~Ip~~E 198 (217)
T PF11926_consen 124 RKGEVWALYKNWSPDWSSSTDDERKYEYDIVE-VLSDYSEEAGIKVAPLVKVKGFK-SVFKRAEEG---GEAVFTIPKSE 198 (217)
T ss_pred CcccEeEEecCCCCCCCcCcCcCcccceEEEE-EeecCCccCcEEEEEEEEecCcE-eeeeecCCC---CcceEEEChHH
Confidence 58999999965 255566676665 444 334678888887543211 111221111 14566666544
Q ss_pred eeccCCceeEEEEeEe
Q 003686 577 VYDSLNSFSHKVRWAK 592 (803)
Q Consensus 577 ~~~~~~~FSH~v~~~~ 592 (803)
+..|||+|-..+
T Consensus 199 ----~~RFSHqIPa~r 210 (217)
T PF11926_consen 199 ----LLRFSHQIPAFR 210 (217)
T ss_pred ----cCeeeccCCCEE
Confidence 688999998654
No 76
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.40 E-value=1.9 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPE 40 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~ 40 (803)
|.-+..+|...+..+++..|++.+.+|.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778899999999999999999999999996
No 77
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=84.00 E-value=0.54 Score=35.88 Aligned_cols=31 Identities=23% Similarity=0.702 Sum_probs=26.3
Q ss_pred EeCCCccchhhHHHhhcc---ccccCCccCCceE
Q 003686 190 TTCNACKMHFEYLRTYLN---NNLVCPQCRQLFL 220 (803)
Q Consensus 190 T~C~~C~~~yeY~r~yln---~~L~C~~C~~~F~ 220 (803)
..|+.|..+|+..-..+- ..++|++|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 579999999999888654 5799999998873
No 78
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.98 E-value=7.7 Score=47.10 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=33.3
Q ss_pred CcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhh
Q 003686 64 MVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128 (803)
Q Consensus 64 ~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~ 128 (803)
-.||=++| ++++| |--|||----++ .+.....||..+ +|++.|+|.++...-|.
T Consensus 1047 L~DYEd~l------pP~ei---ySllALaaca~r-aFGtCSKAfmkL-e~~e~l~~a~kq~ye~L 1100 (1189)
T KOG2041|consen 1047 LSDYEDFL------PPAEI---YSLLALAACAVR-AFGTCSKAFMKL-EAFEELDDAEKQEYENL 1100 (1189)
T ss_pred hccHhhcC------CHHHH---HHHHHHHHhhhh-hhhhhHHHHHHH-HhhhhCCHHHHHHHHHH
Confidence 36777776 57766 556666554442 233456667665 57888888776554443
No 79
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.22 E-value=2 Score=33.35 Aligned_cols=39 Identities=18% Similarity=0.022 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 003686 10 RARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLL 48 (803)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll 48 (803)
-+..+|..++..|++++|.+.+.++.+++|....+...|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 466789999999999999999999999999986654444
No 80
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=82.44 E-value=1.5 Score=42.76 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=37.3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChh
Q 003686 68 YRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKS 121 (803)
Q Consensus 68 Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~ 121 (803)
..||+|++..+.++|.+.|.+|-...+|++. |..-.-..|..|.+.|...-
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999987 66666677888888775433
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.44 E-value=5.1 Score=45.16 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHH
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQ 83 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIK 83 (803)
+..|+.+-+++..+.|..+.|..|+..+.+|..++|.. ...+...+-|++|......+-.|+-.||.+.|+...+-|.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 67899999999999999999999999999999999985 4457777888898877666778999999999877666554
Q ss_pred HHH--------------HHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Q 003686 84 MQY--------------RKLALIIHPDKSTSAGAEAAFQILTEAWNI 116 (803)
Q Consensus 84 kaY--------------RkLal~~HPDKn~~~gA~~aFk~I~eAy~v 116 (803)
+.- -+..++..|..+....+.+...+|.+-|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 432 233556666555545566666666666653
No 82
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.33 E-value=4.6 Score=28.99 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPE 40 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~ 40 (803)
|.-+..+|...+..+++..|...+.+|.+++|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 556788999999999999999999999999986
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=75.67 E-value=3.1 Score=34.45 Aligned_cols=45 Identities=22% Similarity=0.066 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 7 EAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
.|.-+..+|..++..++|..|...+.+|.+++|....+...+..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 578899999999999999999999999999999975543344433
No 84
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=74.95 E-value=1.5 Score=44.06 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=25.1
Q ss_pred eCCCccchh------hHHHh--hccccccCCccCCceEEEEeCC
Q 003686 191 TCNACKMHF------EYLRT--YLNNNLVCPQCRQLFLAVETAP 226 (803)
Q Consensus 191 ~C~~C~~~y------eY~r~--yln~~L~C~~C~~~F~A~e~~~ 226 (803)
.||+|+... .|... .+-+.-.|++|+..|.++|.-.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence 599999755 12222 2334577999999999999755
No 85
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=68.65 E-value=3 Score=34.95 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=24.8
Q ss_pred ceEEeCCCccc----hhhHHHhhccccccCCccCCceE
Q 003686 187 TFWTTCNACKM----HFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 187 TFWT~C~~C~~----~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+-|..||.|+. +..-.-+..|--|.||.|++-.+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 46999999993 33333345788999999987654
No 86
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=66.90 E-value=2.6 Score=33.56 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.2
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEEE
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVE 223 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e 223 (803)
.|+.|+..+++..... .+.||.|+..++..+
T Consensus 5 ~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 5 KCARCGREVELDEYGT--GVRCPYCGYRILFKE 35 (46)
T ss_pred ECCCCCCEEEECCCCC--ceECCCCCCeEEEcc
Confidence 6999999998876554 799999999887543
No 87
>PF14369 zf-RING_3: zinc-finger
Probab=64.33 E-value=3.6 Score=31.35 Aligned_cols=31 Identities=23% Similarity=0.884 Sum_probs=19.0
Q ss_pred ceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 187 TFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 187 TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+|| |..|......... ....+.||.|++.|+
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEe
Confidence 577 7777754433221 123345999999987
No 88
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.55 E-value=4.3 Score=40.11 Aligned_cols=36 Identities=17% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEeCCCccchhhHHHhhcc----ccccCCccCCceEEEEe
Q 003686 189 WTTCNACKMHFEYLRTYLN----NNLVCPQCRQLFLAVET 224 (803)
Q Consensus 189 WT~C~~C~~~yeY~r~yln----~~L~C~~C~~~F~A~e~ 224 (803)
.-.||.|+.+|.+.-.... ....||+|++...-.+.
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDDN 138 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcCc
Confidence 3479999999998765422 23899999999775544
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=62.34 E-value=50 Score=37.18 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003686 9 ARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQ 46 (803)
Q Consensus 9 ~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~q 46 (803)
..++..|..++..++|..|..++.+|.++.|....+..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~ 40 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA 40 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45788899999999999999999999999998755433
No 90
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=7.4 Score=43.16 Aligned_cols=55 Identities=33% Similarity=0.521 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----ChHHHHHHHHHHHHHHHcCChhhHHHhhhcc
Q 003686 76 LADDETIQMQYRKLALIIHPDKST-----SAGAEAAFQILTEAWNILSDKSKRLDYDQKR 130 (803)
Q Consensus 76 ~A~~~eIKkaYRkLal~~HPDKn~-----~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~ 130 (803)
.++...|+.+|+..++.+||++-. ....++.|+.|.+||++|.+..+|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 357789999999999999999874 2356778999999999999977766777655
No 91
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.78 E-value=23 Score=29.42 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003686 12 RKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHI 55 (803)
Q Consensus 12 ~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~l 55 (803)
--+|......+||..|++++.++.++.|....+.+|...++-.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999988777777776544
No 92
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=59.69 E-value=6.5 Score=43.28 Aligned_cols=35 Identities=31% Similarity=0.752 Sum_probs=26.0
Q ss_pred CCceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 185 PSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 185 ~~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+...|+-|+.|+. .-|.+.+......||.|+.+|.
T Consensus 22 ~~~~~~~c~~c~~-~~~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 22 PEGVWTKCPKCGQ-VLYTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCCeeECCCCcc-hhhHHHHHhhCCCCCCCCCcCc
Confidence 4557999999985 4455555555679999988765
No 93
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.14 E-value=19 Score=25.65 Aligned_cols=32 Identities=28% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYP 39 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P 39 (803)
|.-+..++..+...+|+..|...+.+|.++.|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34567889999999999999999999999987
No 94
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=58.52 E-value=7.3 Score=43.04 Aligned_cols=35 Identities=31% Similarity=0.762 Sum_probs=25.5
Q ss_pred CCceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 185 PSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 185 ~~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+...|+-|+.|+. .-|.+.+......|+.|...|.
T Consensus 23 ~~~~~~~c~~c~~-~~~~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 23 PEGLWTKCPSCGQ-VLYRKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCCeeECCCccc-hhhHHHHHhcCCCCCCCCCCee
Confidence 4567999999986 3455554444569999998874
No 95
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=57.86 E-value=8.2 Score=31.84 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 003686 4 NKDEAARARKLAEKKLAEK-DVEGAKNMALKAQKLYP 39 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~-D~~gA~r~a~kA~~L~P 39 (803)
+.+.+.-+..+|...+..+ ++..|++++.+|.+++|
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4456667778888999999 79999999999999998
No 96
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=57.60 E-value=7.5 Score=43.03 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=25.6
Q ss_pred CCceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 185 PSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 185 ~~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+...|+-|+.|+. .-|.+.+......||.|.-+|-
T Consensus 34 p~~lw~kc~~C~~-~~~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 34 YKHLWVQCENCYG-LNYKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCCeeECCCccc-hhhHHHHHHcCCCCCCCCCCcC
Confidence 4567999999986 3455555555679999988754
No 97
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.81 E-value=13 Score=36.92 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceE
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWY 68 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y 68 (803)
+.++++.|.+.+..+|+.-|..++..+...+|....+.++.+.+-..++.+..-...++||
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~Rn~y 130 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWRNYY 130 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4577888999999999999999999999999999888888877765555443322234444
No 98
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=55.29 E-value=11 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.072 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 13 KLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 13 ~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
..|..++..++|..|.+.+.++.+.+|....+...+..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~ 40 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRI 40 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 578899999999999999999999999865554444444
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.02 E-value=61 Score=35.07 Aligned_cols=73 Identities=29% Similarity=0.290 Sum_probs=51.8
Q ss_pred CHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHH
Q 003686 4 NKDEA-ARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETI 82 (803)
Q Consensus 4 nk~EA-~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eI 82 (803)
++.+| ..=+.+|..+|+.+|+..|+.-++||.+.+|+.......++.+ |.-+|....|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~----------------Yq~~Ge~~~A----- 88 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY----------------YQKLGENDLA----- 88 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH----------------HHHcCChhhH-----
Confidence 34554 4457899999999999999999999999999987655444444 4344433222
Q ss_pred HHHHHHHHHHhCCCCC
Q 003686 83 QMQYRKLALIIHPDKS 98 (803)
Q Consensus 83 KkaYRkLal~~HPDKn 98 (803)
...|| .|+.+||+..
T Consensus 89 ~e~Yr-kAlsl~p~~G 103 (250)
T COG3063 89 DESYR-KALSLAPNNG 103 (250)
T ss_pred HHHHH-HHHhcCCCcc
Confidence 33454 5889999864
No 100
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.22 E-value=18 Score=30.08 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=22.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 15 AEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 15 Ae~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
+..++..+||..|...+.++..++|....+....+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 38 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARC 38 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456677777777777777777777755543333333
No 101
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.64 E-value=65 Score=35.29 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHHHH
Q 003686 9 ARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRK 88 (803)
Q Consensus 9 ~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYRk 88 (803)
..+.......++.+||.+|..++...+++--++.++.-+-. +.. .-.+++.. ..+.|...+.+
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~-----L~~-----~L~e~~~~-------i~~~ld~~l~~ 190 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRH-----LSS-----QLQETLEL-------IEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHH-----HhH-----HHHHHHHH-------HHHHHHHHHHH
Confidence 34455667789999999999999999887655544321111 110 11222322 25678888888
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 003686 89 LALIIHPDKSTSAGAEAAFQILTEAWNILSDK 120 (803)
Q Consensus 89 Lal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp 120 (803)
++..+.|+ .|..|.+||..|++.
T Consensus 191 ~~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 191 VCQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHhCCHH---------HHHHHHHHHHHHhhh
Confidence 88888775 588899999999864
No 102
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=52.30 E-value=28 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003686 11 ARKLAEKKLAEKDVEGAKNMALKAQKLYPE 40 (803)
Q Consensus 11 a~~iAe~~l~~~D~~gA~r~a~kA~~L~P~ 40 (803)
...+|...+..+++..|++.+.+....||.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467888899999999999999999999996
No 103
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=52.16 E-value=7.8 Score=42.37 Aligned_cols=35 Identities=31% Similarity=0.786 Sum_probs=28.3
Q ss_pred CCceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 185 PSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 185 ~~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
+...||-|+.|+. .-|..++....-+|++|+..|-
T Consensus 24 ~e~lw~KCp~c~~-~~y~~eL~~n~~vcp~c~~h~r 58 (294)
T COG0777 24 PEGLWTKCPSCGE-MLYRKELESNLKVCPKCGHHMR 58 (294)
T ss_pred CCCceeECCCccc-eeeHHHHHhhhhcccccCcccc
Confidence 3789999999985 5677777777899999987753
No 104
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=51.67 E-value=9.1 Score=39.28 Aligned_cols=32 Identities=22% Similarity=0.725 Sum_probs=26.8
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEEE
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVE 223 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e 223 (803)
+|+.|+.+|.+.-.. +....||.|++...-++
T Consensus 119 ~Cp~C~~rytf~eA~-~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 119 FCPNCHIRFTFDEAM-EYGFRCPQCGEMLEEYD 150 (178)
T ss_pred ECCCCCcEEeHHHHh-hcCCcCCCCCCCCeecc
Confidence 699999999998764 56899999999977543
No 105
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=49.22 E-value=11 Score=37.97 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=26.0
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEE
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAV 222 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~ 222 (803)
+|+.|+.+|.+.-+. +..-.||.|++...-+
T Consensus 111 ~Cp~c~~r~tf~eA~-~~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 111 ICPNMCVRFTFNEAM-ELNFTCPRCGAMLDYL 141 (158)
T ss_pred ECCCCCcEeeHHHHH-HcCCcCCCCCCEeeec
Confidence 699999999998876 4579999999986644
No 106
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.35 E-value=21 Score=33.14 Aligned_cols=35 Identities=29% Similarity=0.570 Sum_probs=28.8
Q ss_pred ccccCCCCCCCEEEEecCCCCCccceeEEEEEeccCCc
Q 003686 501 DRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVISLKPF 538 (803)
Q Consensus 501 dR~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~~F 538 (803)
|.+|+.|++|+|-++|-.+|+ ||+|-|+ |.++.|.
T Consensus 27 D~SEShf~~g~vlrV~r~Ed~--~~fc~I~-vl~vspv 61 (106)
T COG3097 27 DKSESHFKPGDVLRVGRFEDD--RYFCTIE-VLAVSPV 61 (106)
T ss_pred ccchhcCCCCCEEEEEEecCC--cEEEEEE-EEEeccE
Confidence 469999999999999987776 8999997 4466663
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=47.91 E-value=18 Score=29.63 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 18 KLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 18 ~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
+|..++|..|.+++.++...+|....+...++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 34 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQC 34 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777777777777777777755444333333
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.62 E-value=2.1e+02 Score=32.07 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDG 43 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~ 43 (803)
++.+|++++.-..++|++++|..|...+.+|..|.|+..-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV 116 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV 116 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch
Confidence 6889999999999999999999999999999999999754
No 109
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.53 E-value=46 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDG 43 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~ 43 (803)
++++|.+++.-....|..|||.+|..-+..|..++|.+..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 4678999999999999999999999999999999999854
No 110
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=46.74 E-value=37 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003686 11 ARKLAEKKLAEKDVEGAKNMALKAQKLYPE 40 (803)
Q Consensus 11 a~~iAe~~l~~~D~~gA~r~a~kA~~L~P~ 40 (803)
+..+|..++..+++..|...+.++..+.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 567788999999999999999999988875
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=43.98 E-value=28 Score=28.41 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLV 49 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~ 49 (803)
..-.+.+|..++..|+++.|+..+.++...+|..+.+..+++
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 344567899999999999999999999999999665655554
No 112
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.67 E-value=63 Score=36.39 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcc-cccCCcceEEEeccCCCCCHHH
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASK-RINGMVDWYRVLGVEPLADDET 81 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~-k~~~~~D~Y~ILgV~~~A~~~e 81 (803)
|.-||.-|+..|...-..|..+.|.+++..|..|.|+.+.+ |...-....... -+....-|...|-++|.-+.+-
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 56799999999999999999999999999999999998643 222221111111 1233455778888888765543
No 113
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=42.07 E-value=13 Score=36.40 Aligned_cols=37 Identities=16% Similarity=0.447 Sum_probs=29.5
Q ss_pred CceEEeCCCccchhhHHHhhccccccCCccCCceEEE
Q 003686 186 STFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAV 222 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~ 222 (803)
..|+-.|..|+..+...+..--...+|+.|++.|.-+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5899999999998877776633467899999988754
No 114
>PF13446 RPT: A repeated domain in UCH-protein
Probab=42.06 E-value=26 Score=29.46 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.6
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHH
Q 003686 67 WYRVLGVEPLADDETIQMQYRKLAL 91 (803)
Q Consensus 67 ~Y~ILgV~~~A~~~eIKkaYRkLal 91 (803)
=|.+|||+++.+++.|-.+|+....
T Consensus 7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 7 AYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3889999999999999999998776
No 115
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=41.21 E-value=1.1e+02 Score=29.13 Aligned_cols=42 Identities=29% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 10 RARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
.+..+|+..+..+++..|.+++.++..++|..+.+.+.+-.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~ 105 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA 105 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345667788899999999999999999999998876655544
No 116
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=40.62 E-value=6.5 Score=43.87 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=26.2
Q ss_pred CceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 186 STFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
--..|+|.+|..+|...- -+.-..+|++|++.+.
T Consensus 243 KY~~TAC~rC~t~y~le~-A~~~~wrCpkCGg~ik 276 (403)
T COG1379 243 KYHLTACSRCYTRYSLEE-AKSLRWRCPKCGGKIK 276 (403)
T ss_pred chhHHHHHHhhhccCcch-hhhhcccCcccccchh
Confidence 356899999999988644 3445789999999654
No 117
>PRK11827 hypothetical protein; Provisional
Probab=40.51 E-value=11 Score=32.25 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=23.4
Q ss_pred EEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 189 WTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 189 WT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
.-+||.|++...|.. -...|.|..|+..|-
T Consensus 8 ILaCP~ckg~L~~~~--~~~~Lic~~~~laYP 37 (60)
T PRK11827 8 IIACPVCNGKLWYNQ--EKQELICKLDNLAFP 37 (60)
T ss_pred heECCCCCCcCeEcC--CCCeEECCccCeecc
Confidence 358999999888854 246799999987765
No 118
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=39.94 E-value=11 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=26.8
Q ss_pred CceEEeCCCccchhhHHHhhcccc---ccCCccCCce
Q 003686 186 STFWTTCNACKMHFEYLRTYLNNN---LVCPQCRQLF 219 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln~~---L~C~~C~~~F 219 (803)
.+|+-.| +|+..|......|... +.|++|+-.+
T Consensus 15 ~~~~y~C-RCG~~f~i~e~~l~~~~~iv~C~sCSL~I 50 (55)
T PF05207_consen 15 GVYSYPC-RCGGEFEISEEDLEEGEVIVQCDSCSLWI 50 (55)
T ss_dssp TEEEEEE-TTSSEEEEEHHHHHCT--EEEETTTTEEE
T ss_pred CEEEEcC-CCCCEEEEcchhccCcCEEEECCCCccEE
Confidence 4677788 9999999988887654 8899998654
No 119
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=39.45 E-value=14 Score=31.63 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=23.5
Q ss_pred CceEEeCCCccchhhHHHhhcc---ccccCCccCCc
Q 003686 186 STFWTTCNACKMHFEYLRTYLN---NNLVCPQCRQL 218 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln---~~L~C~~C~~~ 218 (803)
.+|.--|| |+.+|+..-.-|- ...+||+|+--
T Consensus 19 ~~ftyPCP-CGDRFeIsLeDl~~GE~VArCPSCSLi 53 (67)
T COG5216 19 KTFTYPCP-CGDRFEISLEDLRNGEVVARCPSCSLI 53 (67)
T ss_pred ceEEecCC-CCCEeEEEHHHhhCCceEEEcCCceEE
Confidence 56766677 9999997665432 47799999754
No 120
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.10 E-value=72 Score=29.78 Aligned_cols=43 Identities=35% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 003686 5 KDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLL 48 (803)
Q Consensus 5 k~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll 48 (803)
+..|.+++..+...+.+||+..|.+.+.++.+..+ .+.+..++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~-~~~l~~L~ 98 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD-NPLLNYLL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 35688999999999999999999999999988743 33444443
No 121
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=38.13 E-value=24 Score=38.28 Aligned_cols=37 Identities=24% Similarity=0.596 Sum_probs=28.4
Q ss_pred CCCCCceEEeCCCccchhhHHHhhccccccCCccCCc
Q 003686 182 RPKPSTFWTTCNACKMHFEYLRTYLNNNLVCPQCRQL 218 (803)
Q Consensus 182 ~~~~~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~ 218 (803)
...+.+...+|.+|...|-+..-..+...+||.|++.
T Consensus 150 ~~~p~~~rv~CghC~~~Fl~~~~~~~tlARCPHCrKv 186 (256)
T PF09788_consen 150 PTQPGSCRVICGHCSNTFLFNTLTSNTLARCPHCRKV 186 (256)
T ss_pred CCCCCceeEECCCCCCcEeccCCCCCccccCCCCcee
Confidence 3355678899999999988874333566799999976
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=37.91 E-value=68 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003686 7 EAARARKLAEKKLAEKDVEGAKNMALKAQKLYPEL 41 (803)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l 41 (803)
.+.-+..+|..++..+++..|...+.++..++|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45567778999999999999999999999999974
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.79 E-value=70 Score=26.44 Aligned_cols=46 Identities=17% Similarity=0.032 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLV 49 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~ 49 (803)
+-+...-+...|..++..+++.+|...+.++..+.|+...+.++.+
T Consensus 25 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3445566677889999999999999999999999998765544443
No 124
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=36.13 E-value=40 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003686 11 ARKLAEKKLAEKDVEGAKNMALKAQKLYPEL 41 (803)
Q Consensus 11 a~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l 41 (803)
+..+|..+...|||..|..++.+|..+....
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999977655433
No 125
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.23 E-value=17 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.655 Sum_probs=25.5
Q ss_pred CceEEeCCCccchhhHHHhhcc---ccccCCccCCce
Q 003686 186 STFWTTCNACKMHFEYLRTYLN---NNLVCPQCRQLF 219 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln---~~L~C~~C~~~F 219 (803)
.+|.--|| |+-+|+....-|. ...+||+|+-..
T Consensus 19 ~~y~yPCp-CGDrf~It~edL~~ge~Va~CpsCSL~I 54 (67)
T KOG2923|consen 19 QTYYYPCP-CGDRFQITLEDLENGEDVARCPSCSLII 54 (67)
T ss_pred CeEEcCCC-CCCeeeecHHHHhCCCeeecCCCceEEE
Confidence 46666676 9999999888653 478999998654
No 126
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=32.48 E-value=74 Score=33.58 Aligned_cols=53 Identities=8% Similarity=0.190 Sum_probs=37.2
Q ss_pred CceeccCCCCCCCcCccccCCCCCCCEEEEecCCCCCccceeEEEEEec--------cCCceEEEEec
Q 003686 486 TSMIVPDPDFHDFDQDRTEMSFSENQVWAAYDDDDGMPRYYAMIQSVIS--------LKPFKMRISWL 545 (803)
Q Consensus 486 ~~~~~pd~dF~dFd~dR~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~--------~~~Fkl~iswL 545 (803)
..+.|-.|++++|+. |....|..|- +.++.|-+-|||.+|+. ...++|++.|+
T Consensus 11 gD~VYv~p~~f~~~~-~~~~~~~~G~------N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 11 GDFLYVSPDAFAEEE-RERATFKAGR------NVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred CCeEEECcccccccc-cccccccccc------cCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 346778889999986 5666666663 55666767777777742 22578999998
No 127
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.38 E-value=21 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=23.6
Q ss_pred ceEEeCCCccchhhHHHhhc-cccccCCccCCc
Q 003686 187 TFWTTCNACKMHFEYLRTYL-NNNLVCPQCRQL 218 (803)
Q Consensus 187 TFWT~C~~C~~~yeY~r~yl-n~~L~C~~C~~~ 218 (803)
+|--.|+.|+..|+...... ...+.||.|+..
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred CEEEEcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 34457999999888766543 567889999874
No 128
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=32.34 E-value=28 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.518 Sum_probs=31.2
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEEEeCC
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETAP 226 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e~~~ 226 (803)
.|+.|....+.....++..+.|+.|+-.|-.+...+
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 699999999998878888999999999988776655
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=32.26 E-value=74 Score=35.80 Aligned_cols=81 Identities=16% Similarity=0.021 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCC--HHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLAD--DETIQMQ 85 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~--~~eIKka 85 (803)
+.-+..+|..++..+++..|..++.+|..+.|....+...+..+...+ .........|-..|.+.|.-. ...|.+.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l--g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL--EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455678889999999999999999999999998766544444443221 111112233444555655433 2234555
Q ss_pred HHHHH
Q 003686 86 YRKLA 90 (803)
Q Consensus 86 YRkLa 90 (803)
..+|.
T Consensus 114 ~~kl~ 118 (356)
T PLN03088 114 DEKIA 118 (356)
T ss_pred HHHHH
Confidence 55553
No 130
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=31.71 E-value=86 Score=22.75 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPEL 41 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l 41 (803)
|.-+-.+|..++..+++..|+.++.+|..+.-.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3456678999999999999999999998776444
No 131
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=30.90 E-value=1.5e+02 Score=36.15 Aligned_cols=117 Identities=10% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----------HHHhcccccCCcceEEEec--cCCCCC
Q 003686 12 RKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV-----------HISASKRINGMVDWYRVLG--VEPLAD 78 (803)
Q Consensus 12 ~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv-----------~laa~~k~~~~~D~Y~ILg--V~~~A~ 78 (803)
..+|..++..+++..|...+.+|..+.|....+...+..+.. +..+.........++-.++ +...-.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 345666788889999999999999999887655444443311 1000000000111111111 111123
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhhcc
Q 003686 79 DETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKR 130 (803)
Q Consensus 79 ~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~~~ 130 (803)
.++-.+.|++ ++..+|+..+ ..-+++-..+.+|++.+..+.+|..+-...
T Consensus 368 ~deA~~~l~~-al~~~P~~~~-~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 368 TSEAESVFEH-YIQARASHLP-QSFEEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHHHHHHHH-HHHhChhhch-hhHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 4444455544 6677888654 344567788889999998887774444433
No 132
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.79 E-value=22 Score=33.81 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=16.1
Q ss_pred eCCCccchhhHHHhhcc-ccccCCccCCceEE
Q 003686 191 TCNACKMHFEYLRTYLN-NNLVCPQCRQLFLA 221 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln-~~L~C~~C~~~F~A 221 (803)
+|+.|+.+|== || .-+.||.|+..|..
T Consensus 11 ~Cp~CG~kFYD----Lnk~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 11 TCPSCGAKFYD----LNKDPIVCPKCGTEFPP 38 (108)
T ss_pred cCCCCcchhcc----CCCCCccCCCCCCccCc
Confidence 57777764422 44 35667777776653
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=30.77 E-value=3.6e+02 Score=28.73 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcc-eEEEeccCC-CCCHHHHHHHHHHH
Q 003686 12 RKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVD-WYRVLGVEP-LADDETIQMQYRKL 89 (803)
Q Consensus 12 ~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D-~Y~ILgV~~-~A~~~eIKkaYRkL 89 (803)
+.+|..++..+|+..|...+.+..+++|+-+.+...+-..-.. .. . ...+ +-..++++. .-|....++++..+
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~--~~-~--~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT--NM-A--LDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh--hh-h--cchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 3445555555555555555555555555555443211111100 00 0 0000 001233433 33566677666544
Q ss_pred H--HHhCCCCCCChHHHHHHHHH
Q 003686 90 A--LIIHPDKSTSAGAEAAFQIL 110 (803)
Q Consensus 90 a--l~~HPDKn~~~gA~~aFk~I 110 (803)
. +..+|+..-.+.|......|
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHH
Confidence 3 44578765334444433333
No 134
>PRK05978 hypothetical protein; Provisional
Probab=30.55 E-value=23 Score=35.50 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=29.3
Q ss_pred CceEEeCCCccchhhHHHhhccccccCCccCCceEEEE
Q 003686 186 STFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVE 223 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e 223 (803)
..+..-||+|+. ....+.|+.-+-.|+.|...|....
T Consensus 30 rGl~grCP~CG~-G~LF~g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 30 RGFRGRCPACGE-GKLFRAFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred HHHcCcCCCCCC-CcccccccccCCCccccCCccccCC
Confidence 456778999985 5555789999999999999987543
No 135
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.26 E-value=77 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003686 12 RKLAEKKLAEKDVEGAKNMALKAQK 36 (803)
Q Consensus 12 ~~iAe~~l~~~D~~gA~r~a~kA~~ 36 (803)
+++|..++..||.++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999998874
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=30.22 E-value=1e+02 Score=29.84 Aligned_cols=44 Identities=16% Similarity=-0.108 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003686 7 EAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVI 50 (803)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~ 50 (803)
.+.-+..+|...+..+++..|..++.+|..+.|....+..-+..
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34556777888888888888888888888888887665443333
No 137
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.58 E-value=1.2e+02 Score=32.32 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 3 CNKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 3 ~nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
++|--..=..++|+.++..+|+..|.+++.++...|..- +...+++.+
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-gW~~l~~~~ 220 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-GWWSLLTEV 220 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CcHHHHHHH
Confidence 345556667899999999999999999999998888654 544444444
No 138
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.91 E-value=41 Score=35.84 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYR 87 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYR 87 (803)
+.-....|..+|..+-+..|...+-||..|.|+... .|+..+..|--.+.--..-.||-.||.++|.-. +.+++-+
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k--Al~RRAeayek~ek~eealeDyKki~E~dPs~~--ear~~i~ 209 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK--ALERRAEAYEKMEKYEEALEDYKKILESDPSRR--EAREAIA 209 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 444556788899999999999999999999999854 455656665433332334568888998887654 5566655
Q ss_pred HH
Q 003686 88 KL 89 (803)
Q Consensus 88 kL 89 (803)
+|
T Consensus 210 rl 211 (271)
T KOG4234|consen 210 RL 211 (271)
T ss_pred hc
Confidence 54
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=28.13 E-value=4.7e+02 Score=23.94 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 4 NKDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 4 nk~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
+.+.+.....+|..++..+++..|..++.++..++|....+...+..+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 445566678889999999999999999999999999875544444433
No 140
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=22 Score=30.54 Aligned_cols=32 Identities=25% Similarity=0.667 Sum_probs=24.2
Q ss_pred EEeCCCccchhhHHHhhccccccCCccCCceEEE
Q 003686 189 WTTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAV 222 (803)
Q Consensus 189 WT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~ 222 (803)
.-+||-|++.-.|.+. ...|.|+.|+..|-..
T Consensus 8 iLaCP~~kg~L~~~~~--~~~L~c~~~~~aYpI~ 39 (60)
T COG2835 8 ILACPVCKGPLVYDEE--KQELICPRCKLAYPIR 39 (60)
T ss_pred eeeccCcCCcceEecc--CCEEEecccCceeecc
Confidence 3579999998666553 4689999999987643
No 141
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=27.70 E-value=29 Score=34.84 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=24.0
Q ss_pred eCCCccchhhH---HHh-----hccccccCCccCCceEEEEeCC
Q 003686 191 TCNACKMHFEY---LRT-----YLNNNLVCPQCRQLFLAVETAP 226 (803)
Q Consensus 191 ~C~~C~~~yeY---~r~-----yln~~L~C~~C~~~F~A~e~~~ 226 (803)
-||+|+..-.- .|. .+-+..-|++|++-|..+|.-.
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErve 45 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERAE 45 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeecc
Confidence 48888863221 011 1224567999999999999876
No 142
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=27.17 E-value=22 Score=35.83 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=24.0
Q ss_pred eCCCccchhhHHHh--------hccccccCCccCCceEEEEeCC
Q 003686 191 TCNACKMHFEYLRT--------YLNNNLVCPQCRQLFLAVETAP 226 (803)
Q Consensus 191 ~C~~C~~~yeY~r~--------yln~~L~C~~C~~~F~A~e~~~ 226 (803)
.||+|.+...--.. -+-+..-|++|++-|..+|...
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~E 45 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERAE 45 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccccchhheee
Confidence 48999864432111 1224667999999999988765
No 143
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=26.96 E-value=19 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=16.2
Q ss_pred CCCccchhhHHHhhccccccCCccCCceE
Q 003686 192 CNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 192 C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
||+|+...+-.+..--..-.|++|++.++
T Consensus 2 CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred cCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 77887643322211113445888888776
No 144
>smart00439 BAH Bromo adjacent homology domain.
Probab=26.87 E-value=1.4e+02 Score=27.41 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCCCCEEEEecCCCCCccceeEEEEEeccCC---ceEEEEeccc
Q 003686 507 FSENQVWAAYDDDDGMPRYYAMIQSVISLKP---FKMRISWLNS 547 (803)
Q Consensus 507 F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~~---Fkl~iswLe~ 547 (803)
|++|+.=-+=.+...-|.+.|+|.+|..... ..+++.|+-.
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~r 45 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYR 45 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
Confidence 3445533333333357999999999975433 6899999954
No 145
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=26.74 E-value=1.2e+02 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHHHHcCC
Q 003686 76 LADDETIQMQYRKLALIIHPDKSTS-A----GAEAAFQILTEAWNILSD 119 (803)
Q Consensus 76 ~A~~~eIKkaYRkLal~~HPDKn~~-~----gA~~aFk~I~eAy~vLsD 119 (803)
..+..+++.+.|.+-+..|||-... | -.+..+++++.-.+.|..
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 4466789999999999999997543 2 346778888887777753
No 146
>PF14353 CpXC: CpXC protein
Probab=26.66 E-value=37 Score=32.49 Aligned_cols=12 Identities=33% Similarity=1.015 Sum_probs=9.5
Q ss_pred cccCCccCCceE
Q 003686 209 NLVCPQCRQLFL 220 (803)
Q Consensus 209 ~L~C~~C~~~F~ 220 (803)
...||+|+..|.
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 567999988875
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=1.3e+02 Score=34.95 Aligned_cols=78 Identities=21% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHHHHHHH
Q 003686 12 RKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQYRKLAL 91 (803)
Q Consensus 12 ~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal 91 (803)
+.+|-.++..++|..|+....++..+.|.... .|...-..+++....-....||-.+|.+.|.- .+|+.+..+|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K--ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l~~ 336 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVK--ALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 34556666666666666666666666665432 34443344333332223345566666666543 344444444443
Q ss_pred Hh
Q 003686 92 II 93 (803)
Q Consensus 92 ~~ 93 (803)
++
T Consensus 337 k~ 338 (397)
T KOG0543|consen 337 KI 338 (397)
T ss_pred HH
Confidence 33
No 148
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=26.11 E-value=24 Score=30.33 Aligned_cols=18 Identities=22% Similarity=0.783 Sum_probs=14.6
Q ss_pred hhccccccCCccCCceEE
Q 003686 204 TYLNNNLVCPQCRQLFLA 221 (803)
Q Consensus 204 ~yln~~L~C~~C~~~F~A 221 (803)
..+.-.|.|++|++.|-.
T Consensus 48 ~i~eg~L~Cp~c~r~YPI 65 (68)
T PF03966_consen 48 EIVEGELICPECGREYPI 65 (68)
T ss_dssp ETTTTEEEETTTTEEEEE
T ss_pred cccCCEEEcCCCCCEEeC
Confidence 456789999999998864
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=70 Score=36.93 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003686 10 RARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV 53 (803)
Q Consensus 10 ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv 53 (803)
.+.+.+..++..++|..|+.+++||+.+.|....|..-|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34566777788888888888888888888887666555555543
No 150
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=25.93 E-value=6.8e+02 Score=25.07 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQ-LLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQY 86 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~q-ll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaY 86 (803)
+..+-..|+.+|+.++|..|.+.+.....-+|.-+-..| -|..++.+... .+-++-..+|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-------------------~~y~~A~a~~ 70 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-------------------GDYEEAIAAY 70 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-------------------cCHHHHHHHH
Confidence 456778899999999999999999999999999865543 45555555421 1344455666
Q ss_pred HHHHHHhCCCCCCCh
Q 003686 87 RKLALIIHPDKSTSA 101 (803)
Q Consensus 87 RkLal~~HPDKn~~~ 101 (803)
.++. .+||.+-.-+
T Consensus 71 ~rFi-rLhP~hp~vd 84 (142)
T PF13512_consen 71 DRFI-RLHPTHPNVD 84 (142)
T ss_pred HHHH-HhCCCCCCcc
Confidence 6654 5788765443
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.14 E-value=7.2e+02 Score=26.48 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQ-LLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQY 86 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~q-ll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaY 86 (803)
+...-..|...+..++|..|...+.++...+|.-+-+.+ ++..+..+... . +-.+-...|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-------~------------~y~~A~~~~ 92 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-------A------------DLPLAQAAI 92 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-------C------------CHHHHHHHH
Confidence 556778899999999999999999999999998754432 33344443321 1 233434445
Q ss_pred HHHHHHhCCCCC
Q 003686 87 RKLALIIHPDKS 98 (803)
Q Consensus 87 RkLal~~HPDKn 98 (803)
++ .+..||+..
T Consensus 93 e~-fi~~~P~~~ 103 (243)
T PRK10866 93 DR-FIRLNPTHP 103 (243)
T ss_pred HH-HHHhCcCCC
Confidence 54 477899875
No 152
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.98 E-value=7.5e+02 Score=25.25 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHH
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQ-LLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQM 84 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~q-ll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKk 84 (803)
..+..+-..|...|..|||..|...+.+....+|.-+-+.+ ++..++.+.... +-.+-..
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-------------------~y~~A~~ 63 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-------------------DYEEAIA 63 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--------------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-------------------CHHHHHH
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 003686 85 QYRKLALIIHPDKSTSAGAEAAFQILTEAW 114 (803)
Q Consensus 85 aYRkLal~~HPDKn~~~gA~~aFk~I~eAy 114 (803)
.|.++. ..||+.. .+..+.=.+..++
T Consensus 64 ~~~~fi-~~yP~~~---~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 64 AYERFI-KLYPNSP---KADYALYMLGLSY 89 (203)
T ss_dssp HHHHHH-HH-TT-T---THHHHHHHHHHHH
T ss_pred HHHHHH-HHCCCCc---chhhHHHHHHHHH
No 153
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=24.50 E-value=1.1e+02 Score=31.61 Aligned_cols=40 Identities=23% Similarity=0.063 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLP 45 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~ 45 (803)
+.+..|..++..++..+++..|...+.+|.++.|....+.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~ 110 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY 110 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3466788899999999999999999999999999875543
No 154
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=24.20 E-value=7.5e+02 Score=29.69 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003686 7 EAARARKLAEKKLAEKDVEGAKNMALKAQKLYPE 40 (803)
Q Consensus 7 EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~ 40 (803)
.|..+++.+..++..++|..|...+.+|..+.|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3778899999999999999999999999999996
No 155
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=24.13 E-value=2.5e+02 Score=25.78 Aligned_cols=45 Identities=18% Similarity=-0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003686 8 AARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILD 52 (803)
Q Consensus 8 A~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~d 52 (803)
..-+..+|..++..+++..|..++.++..++|........+..+.
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 445567788888888899999888888888888765554555443
No 156
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.95 E-value=82 Score=28.36 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 003686 15 AEKKLAEKDVEGAKNMALKAQKLY 38 (803)
Q Consensus 15 Ae~~l~~~D~~gA~r~a~kA~~L~ 38 (803)
++.+...||++||++...+|+.+.
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 567899999999999999998875
No 157
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=23.80 E-value=43 Score=32.93 Aligned_cols=35 Identities=17% Similarity=0.469 Sum_probs=29.2
Q ss_pred CceEEeCCCccchhhHHHhhcc-ccccCCccCCceE
Q 003686 186 STFWTTCNACKMHFEYLRTYLN-NNLVCPQCRQLFL 220 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln-~~L~C~~C~~~F~ 220 (803)
.+|.=.|..|+..+...+...+ ...+|..|++.|+
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~ 144 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLI 144 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEE
Confidence 3688889999998887777666 7899999999876
No 158
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=23.58 E-value=92 Score=31.21 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=38.9
Q ss_pred ccccc-CCCceee-eeeEeCce-----eeecc-------CCceeEEEEeEe-cCCccEEEecCCCcEeEEecCC
Q 003686 556 LNWVG-SGFPKTS-GDFWRGKY-----EVYDS-------LNSFSHKVRWAK-GTRGAIHIYPRKGEVWALYRNW 614 (803)
Q Consensus 556 ~~W~~-~~lpv~C-G~F~~~~~-----~~~~~-------~~~FSH~v~~~~-g~~~~y~IyPrkGEvWAlYk~W 614 (803)
..++. -|||..+ .-|..... ..... ...+.|.+.--. +..+.|.|.|.+|+||++.-+.
T Consensus 32 ~~fL~~~GlP~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vlG~~~~~~~i~ld~~tG~V~~~~~~~ 105 (179)
T PF14435_consen 32 RRFLSEVGLPEDPPPFFRFDPEDDDPLPTLAEAFDEEGLPPDAGHYIVLGSDGSGGSICLDPATGAVYALDPDE 105 (179)
T ss_pred HHHHHhcCCCCCccceeeccCccccccCcHHHHhccccCccccCccEEEEEcCCCCeEEEECCCCeEEEecCCc
Confidence 34443 4999999 67776542 11111 345777766433 3377899999999999987654
No 159
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=23.14 E-value=1.5e+02 Score=27.16 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKL 37 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L 37 (803)
.+|...+..|+..|..+||..|++++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999776
No 160
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=22.51 E-value=59 Score=26.92 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=24.5
Q ss_pred EeCCCccchhhHHHhhccccccCCccCCceEEEEeC
Q 003686 190 TTCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVETA 225 (803)
Q Consensus 190 T~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e~~ 225 (803)
=.|..|+..++.. .....++||.|+-..+-.+.+
T Consensus 7 Y~C~~Cg~~~~~~--~~~~~irCp~Cg~rIl~K~R~ 40 (49)
T COG1996 7 YKCARCGREVELD--QETRGIRCPYCGSRILVKERP 40 (49)
T ss_pred EEhhhcCCeeehh--hccCceeCCCCCcEEEEeccC
Confidence 4699999988433 245689999998876655443
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=22.46 E-value=2.1e+02 Score=22.45 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 003686 11 ARKLAEKKLAEKDVEGAKNMALKAQKLYPELD 42 (803)
Q Consensus 11 a~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~ 42 (803)
+..+|...+..+++..|..++.++.++.|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 46678889999999999999999999998764
No 162
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.26 E-value=1.2e+02 Score=31.60 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcC
Q 003686 74 EPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILS 118 (803)
Q Consensus 74 ~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLs 118 (803)
+++|+.+||..|+.+|..+|--| +..-..|..||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 47899999999999999998444 456667888998664
No 163
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=22.20 E-value=1.6e+02 Score=30.23 Aligned_cols=44 Identities=20% Similarity=-0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003686 8 AARARKLAEKK-LAEKD--VEGAKNMALKAQKLYPELDGLPQLLVIL 51 (803)
Q Consensus 8 A~ra~~iAe~~-l~~~D--~~gA~r~a~kA~~L~P~l~~i~qll~~~ 51 (803)
+.-+..+|..+ +..++ +..|...+.+|.+++|....+..+|+.+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 33445556553 45555 4777777777777777765544444443
No 164
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.18 E-value=67 Score=25.77 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=23.4
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEEE
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAVE 223 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~e 223 (803)
.|..|+..++.. ....++|+.|+-..+-.+
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~CG~rIlyK~ 33 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCRECGYRILYKK 33 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCCCceEEEEe
Confidence 689999987765 357899999988877444
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.89 E-value=3.9e+02 Score=26.75 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHhcccccCCcceEEEeccCCCCCHHHHHHHHHHH
Q 003686 11 ARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV-HISASKRINGMVDWYRVLGVEPLADDETIQMQYRKL 89 (803)
Q Consensus 11 a~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv-~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKkaYRkL 89 (803)
-+.++..++..+++..|..-+.+-.+|+|.-+.+.-.+-..-+ +... . .-.+-.++++ +-|+..++.+++.+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~--~---~~~~~~~~~~--drD~~~~~~A~~~f 122 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ--D---EGSLQSFFRS--DRDPTPARQAFRDF 122 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH--h---hhHHhhhccc--ccCcHHHHHHHHHH
Confidence 4678999999999999999999999999999987643322211 1110 0 1112233333 44555667777665
Q ss_pred HHH--hCCCC
Q 003686 90 ALI--IHPDK 97 (803)
Q Consensus 90 al~--~HPDK 97 (803)
..+ .+|+.
T Consensus 123 ~~lv~~yP~S 132 (142)
T PF13512_consen 123 EQLVRRYPNS 132 (142)
T ss_pred HHHHHHCcCC
Confidence 444 36764
No 166
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=21.88 E-value=1.6e+02 Score=26.92 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCCCCEEEEecCCC--CCccceeEEEEEecc--CCceEEEEecccC
Q 003686 506 SFSENQVWAAYDDDD--GMPRYYAMIQSVISL--KPFKMRISWLNSK 548 (803)
Q Consensus 506 ~F~~gQIWA~Yd~~D--gmPR~Ya~I~kV~~~--~~Fkl~iswLe~~ 548 (803)
.|.+||.=.+-.+.+ .-|.+.|+|.++... ....|++.|+-.-
T Consensus 3 ~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp 49 (123)
T cd04370 3 TYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRP 49 (123)
T ss_pred EEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEch
Confidence 356677444444433 579999999999753 2379999999653
No 167
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.62 E-value=26 Score=32.55 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=13.2
Q ss_pred CceEEecCCCccceeccc
Q 003686 667 SKRRTIPREEIFRFSHRV 684 (803)
Q Consensus 667 ~~~~~Ip~~el~rFSHqI 684 (803)
..|+.||++|+|++..+|
T Consensus 79 eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 79 EVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred cEEEeCCcHHHHHHHHHH
Confidence 467899999998887654
No 168
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=20.93 E-value=42 Score=27.40 Aligned_cols=31 Identities=16% Similarity=0.563 Sum_probs=25.3
Q ss_pred EEeCCCccchhhHHHhhcc-----ccccCCccCCce
Q 003686 189 WTTCNACKMHFEYLRTYLN-----NNLVCPQCRQLF 219 (803)
Q Consensus 189 WT~C~~C~~~yeY~r~yln-----~~L~C~~C~~~F 219 (803)
+++|..|...-|....+.. +.|+|..|+...
T Consensus 6 Fv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~vl 41 (46)
T PF11331_consen 6 FVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEVL 41 (46)
T ss_pred EeECccHHHHHcCCCccCCCccceeEEeCCCCceeE
Confidence 5799999999998887732 489999998764
No 169
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.92 E-value=84 Score=36.07 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=18.2
Q ss_pred CceEEeCCCccchhhHHHhhccccccCCccCCceE
Q 003686 186 STFWTTCNACKMHFEYLRTYLNNNLVCPQCRQLFL 220 (803)
Q Consensus 186 ~TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~F~ 220 (803)
..+++.|+.|.+..++. .-.|+.|++...
T Consensus 180 ~~~~~~C~~C~G~G~~i------~~pC~~C~G~G~ 208 (371)
T COG0484 180 FSFQQTCPTCNGTGKII------KDPCGKCKGKGR 208 (371)
T ss_pred EEEEEECCCCccceeEC------CCCCCCCCCCCe
Confidence 34566777777766553 346777766655
No 170
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=20.69 E-value=2.1e+02 Score=25.77 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=38.8
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHhhh
Q 003686 67 WYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQ 128 (803)
Q Consensus 67 ~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~YD~ 128 (803)
--.+++++|-|+..+|+.+-++..+++.--..++....++|..--++... ..|...|.
T Consensus 5 Ik~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~iaA----~areLLDa 62 (88)
T COG5552 5 IKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIAA----TARELLDA 62 (88)
T ss_pred hHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH----HHHHHHHh
Confidence 34567899999999999998888877755555555666677655444332 23555554
No 171
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=20.61 E-value=5.5e+02 Score=23.32 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC--HH-HHHHHHHH
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDG--LP-QLLVILDV 53 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~--i~-qll~~~dv 53 (803)
++......+|..++..|++.+|...++...+..+.... .. .||.++++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 44566778899999999999999999999999988832 32 35555555
No 172
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.59 E-value=33 Score=32.73 Aligned_cols=29 Identities=24% Similarity=0.729 Sum_probs=22.9
Q ss_pred eCCCccchhhHHHhhccccccCCccCCceEEE
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQLFLAV 222 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~~F~A~ 222 (803)
.||.|...|.|.- ...+.||.|...+-..
T Consensus 4 ~CP~C~seytY~d---g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 4 PCPKCNSEYTYHD---GTQLICPSCLYEWNEN 32 (109)
T ss_pred cCCcCCCcceEec---CCeeECcccccccccc
Confidence 5999999999965 4569999997765433
No 173
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.56 E-value=45 Score=32.73 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=5.8
Q ss_pred cccCCccCCce
Q 003686 209 NLVCPQCRQLF 219 (803)
Q Consensus 209 ~L~C~~C~~~F 219 (803)
-+.||.|+..|
T Consensus 26 p~vcP~cg~~~ 36 (129)
T TIGR02300 26 PAVSPYTGEQF 36 (129)
T ss_pred CccCCCcCCcc
Confidence 45555555543
No 174
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=20 Score=37.58 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH--------HHHHHHhcc-----------------
Q 003686 5 KDEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVI--------LDVHISASK----------------- 59 (803)
Q Consensus 5 k~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~--------~dv~laa~~----------------- 59 (803)
..++.+++.++..+... ++..|.+.+.++...++.... ...... .+|+.....
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~ 79 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGS 79 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCC
Confidence 45778899999888888 999999999999999986655 111111 111100000
Q ss_pred -------------cccCCcceEEEeccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHcCChhhHHHh
Q 003686 60 -------------RINGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDY 126 (803)
Q Consensus 60 -------------k~~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~~HPDKn~~~gA~~aFk~I~eAy~vLsDp~kR~~Y 126 (803)
......+||++||+....+.. .+.|+ |++..++ ...|..+..+...|.++ .|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 147 (306)
T KOG0714|consen 80 FSSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQY 147 (306)
T ss_pred CCCCCCCCcceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-ccccc
Confidence 000133466666654443322 33333 5555455 67777777788888888 88888
Q ss_pred hhccC
Q 003686 127 DQKRN 131 (803)
Q Consensus 127 D~~~~ 131 (803)
|....
T Consensus 148 ~~~~~ 152 (306)
T KOG0714|consen 148 DSSGS 152 (306)
T ss_pred ccccc
Confidence 77654
No 175
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=1.7e+02 Score=34.99 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDV 53 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv 53 (803)
..|..++....+.+.++.|+.|.+++..|..++|.-+---+=+++|.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~ 160 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE 160 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH
Confidence 468889999999999999999999999999999995433333444433
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=2.2e+02 Score=31.64 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCcceEEEeccCCCCCHHHHHHH
Q 003686 6 DEAARARKLAEKKLAEKDVEGAKNMALKAQKLYPELDGLPQLLVILDVHISASKRINGMVDWYRVLGVEPLADDETIQMQ 85 (803)
Q Consensus 6 ~EA~ra~~iAe~~l~~~D~~gA~r~a~kA~~L~P~l~~i~qll~~~dv~laa~~k~~~~~D~Y~ILgV~~~A~~~eIKka 85 (803)
..++.|.-++..+|..+++..|..-+.+|.+|.|....+ ++...+++.... +. -...+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a----~~------------~~ta~a~~l 215 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQA----GQ------------QMTAKARAL 215 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhc----CC------------cccHHHHHH
Confidence 467889999999999999999999999999999997655 444444443221 11 134566777
Q ss_pred HHHHHHHhCCCCCCC-------hHHHHHHHHHHHHHHHcC
Q 003686 86 YRKLALIIHPDKSTS-------AGAEAAFQILTEAWNILS 118 (803)
Q Consensus 86 YRkLal~~HPDKn~~-------~gA~~aFk~I~eAy~vLs 118 (803)
+++...+=|-+ ... ...+..|+.-..+|+.|-
T Consensus 216 l~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 216 LRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77654443333 211 123344666666777664
No 177
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.21 E-value=37 Score=25.25 Aligned_cols=24 Identities=33% Similarity=0.877 Sum_probs=12.9
Q ss_pred eCCCccchhhHHHhhccccccCCccCC
Q 003686 191 TCNACKMHFEYLRTYLNNNLVCPQCRQ 217 (803)
Q Consensus 191 ~C~~C~~~yeY~r~yln~~L~C~~C~~ 217 (803)
.|+.|...|.| .-+..+.|+.|..
T Consensus 4 ~Cp~C~se~~y---~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY---EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E---E-SSSEEETTTTE
T ss_pred CCCCCCCccee---ccCCEEeCCcccc
Confidence 59999999999 3367889999964
No 178
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.18 E-value=45 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=22.9
Q ss_pred ceEEeCCCccchhhHHHhhcc-ccccCCccCC
Q 003686 187 TFWTTCNACKMHFEYLRTYLN-NNLVCPQCRQ 217 (803)
Q Consensus 187 TFWT~C~~C~~~yeY~r~yln-~~L~C~~C~~ 217 (803)
+|-=.|..|+..|+-...+-. ..+.||.|+.
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 344568888888887766544 6788999987
No 179
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=20.01 E-value=50 Score=34.41 Aligned_cols=28 Identities=25% Similarity=0.710 Sum_probs=22.7
Q ss_pred ceEEeCCCccchhhHHHhhccccccCCccCCc
Q 003686 187 TFWTTCNACKMHFEYLRTYLNNNLVCPQCRQL 218 (803)
Q Consensus 187 TFWT~C~~C~~~yeY~r~yln~~L~C~~C~~~ 218 (803)
...-.|.+|+....+ -+..|.||+|...
T Consensus 147 VI~A~CsrC~~~L~~----~~~~l~Cp~Cg~t 174 (188)
T COG1096 147 VIYARCSRCRAPLVK----KGNMLKCPNCGNT 174 (188)
T ss_pred EEEEEccCCCcceEE----cCcEEECCCCCCE
Confidence 457789999987776 4689999999765
Done!