Query 003686
Match_columns 803
No_of_seqs 359 out of 2330
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 17:59:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003686.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1736-1740//hhsearch_pdb/003686hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 1.0 1 1 175.3 2.9 132 62-223 7-147 (155)
2 3lz8_A Putative chaperone DNAJ 1.0 1 1 137.0 0.0 70 63-132 26-95 (329)
3 3apo_A DNAJ homolog subfamily 1.0 1 1 129.4 -0.9 73 62-134 18-91 (780)
4 2ctq_A DNAJ homolog subfamily 1.0 1 1 126.8 4.4 73 62-134 17-90 (112)
5 2ctr_A DNAJ homolog subfamily 1.0 1 1 126.0 5.3 72 63-134 5-76 (88)
6 2cug_A Mkiaa0962 protein; DNAJ 1.0 1 1 125.6 5.5 71 62-132 14-84 (88)
7 3apq_A DNAJ homolog subfamily 1.0 1 1 125.6 6.3 70 65-134 2-72 (210)
8 1wjz_A 1700030A21RIK protein; 1.0 1 1 125.4 4.0 71 62-132 13-90 (94)
9 2yua_A Williams-beuren syndrom 1.0 1 1 124.7 5.5 71 62-132 14-85 (99)
10 2ctp_A DNAJ homolog subfamily 1.0 1 1 124.5 5.8 71 62-132 4-74 (78)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=175.34 Aligned_cols=132 Identities=21% Similarity=0.471 Sum_probs=101.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 4876607896569999999999999999998399999995-------799999999999999099146798650158768
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSA-------GAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~~-------gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
....|||+||||+++|+.++||++||+|++++||||++.. .|.+.|+.|++||++|+||.+|..||..+....
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
T ss_conf 99998257538999979999999999999987819898887556789999999999999998479899999999735312
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCC--CCCCC
Q ss_conf 9999998889998999886555578888542237899988899999999998027868885201367776304--53258
Q 003686 135 GKSPNMKVSPVSPTTGEKSIHYFSKSDNSDARYQKNPTFSKCAPSHFRPKPSTFWTTCNACKMHFEYLRTYLN--NNLVC 212 (803)
Q Consensus 135 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~TFWT~C~~C~~~yeY~R~yln--~~L~C 212 (803)
... . ...+. .+... .. .-.....+||+.|+ |++.|+|.+..++ ..+.|
T Consensus 87 ~~~-~---------~~~~~--~~~~~----------~m-------~~~e~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C 136 (155)
T 2l6l_A 87 LRN-V---------GPVDA--QVYLE----------EM-------SWNEGDHSFYLSCR-CGGKYSVSKDEAEEVSLISC 136 (155)
T ss_dssp HHT-T---------CSSSE--EEETT----------TS-------EEETTTTEEEEECS-SSCEEEEETTHHHHCCEEEC
T ss_pred CCC-C---------CCCCC--EEEHH----------HH-------CCCCCCCEEEECCC-CCCEEEECHHHHCCCCEEEC
T ss_conf 023-4---------43110--10187----------73-------51567767977289-99868862999689979989
Q ss_pred CCCCCCEEEEE
Q ss_conf 86689417998
Q 003686 213 PQCRQLFLAVE 223 (803)
Q Consensus 213 ~nC~~~F~A~e 223 (803)
++|+..|.++=
T Consensus 137 ~sCSl~~~v~~ 147 (155)
T 2l6l_A 137 DTCSLIIELLH 147 (155)
T ss_dssp SSSSCEEEEEC
T ss_pred CCCCEEEEEEE
T ss_conf 99850789997
No 2
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=1.00 E-value=1 Score=136.97 Aligned_cols=70 Identities=44% Similarity=0.748 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 8766078965699999999999999999983999999957999999999999990991467986501587
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
...|||+||||+++|+.++||++||+|+++||||+|+.+.|+++|+.|++||++|+||.+|..||..+..
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 5469799839699999999999999999987889899847999999999999985413100233511124
No 3
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=129.43 Aligned_cols=73 Identities=30% Similarity=0.539 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 48766078965699999999999999999983999999-95799999999999999099146798650158768
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~-~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
....|||+||||+++|+.++||++||+|++++||||++ .+.+.++|+.|++||++|+||.+|..||+.+....
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 99999899809899999999999999999987869899975799999999999999717688898876411233
No 4
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=126.76 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=67.2
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 48766078965699999999999999999983999999-95799999999999999099146798650158768
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~-~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
....|||+||||+++|+.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 67999999849999989999999999999988839899967999999999999999889889999998631135
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=126.05 Aligned_cols=72 Identities=36% Similarity=0.623 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 876607896569999999999999999998399999995799999999999999099146798650158768
Q 003686 63 GMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 63 ~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
...|||+||||+++|+.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 887999985969998999999999999998882989885899999999999999789999999998573011
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=125.63 Aligned_cols=71 Identities=42% Similarity=0.624 Sum_probs=67.1
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 48766078965699999999999999999983999999957999999999999990991467986501587
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
....|||+||||+++|+.++||++||+|++++|||+++.+.+++.|+.|++||++|+||.+|..||..+..
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 58979999919699999999999999999998869898755999999999999998799999999872777
No 7
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=1.00 E-value=1 Score=125.61 Aligned_cols=70 Identities=31% Similarity=0.581 Sum_probs=65.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 66078965699999999999999999983999999-95799999999999999099146798650158768
Q 003686 65 VDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNGRY 134 (803)
Q Consensus 65 ~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~-~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~~~ 134 (803)
.|||+||||+++|+.++||++||+|++++||||++ .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 78799869999989999999999999987959899975899999999999999679999999987523255
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=125.42 Aligned_cols=71 Identities=34% Similarity=0.720 Sum_probs=65.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 487660789656999999999999999999839999999-------57999999999999990991467986501587
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTS-------AGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~-------~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
....|||+||||+++|+.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 899985787099999799999999999999888098977787143699999999999999998899999999987517
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=124.69 Aligned_cols=71 Identities=27% Similarity=0.469 Sum_probs=65.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 48766078965699999999999999999983999999-957999999999999990991467986501587
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKST-SAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~-~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
....|||+||||+++|+.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+|+.+|..||..+..
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 886699888299999899999999999999988398999789999999999999998798999999986322
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=124.50 Aligned_cols=71 Identities=42% Similarity=0.704 Sum_probs=67.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 48766078965699999999999999999983999999957999999999999990991467986501587
Q 003686 62 NGMVDWYRVLGVEPLADDETIQMQYRKLALIIHPDKSTSAGAEAAFQILTEAWNILSDKSKRLDYDQKRNG 132 (803)
Q Consensus 62 ~~~~D~Y~ILgV~~~A~~~eIKkaYRkLal~lHPDKn~~~gAe~aFk~I~eAy~vLsDp~kR~~YD~~~~~ 132 (803)
+...|||+||||+++++.++||++||+|++++|||++..+++.+.|+.|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 99989999849899989999999999999998819899833999999999999998899999999873765
Done!