Query 003687
Match_columns 803
No_of_seqs 641 out of 3302
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 2.3E-67 5E-72 608.7 18.7 686 3-694 181-1092(1125)
2 TIGR01070 mutS1 DNA mismatch r 100.0 2.1E-49 4.5E-54 476.8 44.9 510 123-693 251-783 (840)
3 PRK05399 DNA mismatch repair p 100.0 3.4E-49 7.3E-54 477.0 46.0 507 123-693 265-798 (854)
4 COG0249 MutS Mismatch repair A 100.0 3.8E-48 8.3E-53 462.2 40.6 511 126-694 265-799 (843)
5 PRK00409 recombination and DNA 100.0 6.6E-46 1.4E-50 444.2 41.8 443 185-691 64-514 (782)
6 TIGR01069 mutS2 MutS2 family p 100.0 1.1E-44 2.3E-49 432.8 43.8 470 152-691 24-509 (771)
7 KOG0218 Mismatch repair MSH3 [ 100.0 3.9E-42 8.5E-47 385.7 19.7 327 359-694 690-1030(1070)
8 KOG0219 Mismatch repair ATPase 100.0 8.6E-42 1.9E-46 389.8 21.3 405 257-696 427-839 (902)
9 PF00488 MutS_V: MutS domain V 100.0 1.8E-40 3.8E-45 347.4 19.1 226 462-692 1-233 (235)
10 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.9E-37 4.1E-42 321.0 17.3 193 492-684 15-218 (218)
11 KOG0220 Mismatch repair ATPase 100.0 1.2E-36 2.6E-41 343.2 18.6 315 393-718 514-835 (867)
12 cd03287 ABC_MSH3_euk MutS3 hom 100.0 3.2E-36 6.9E-41 312.7 17.1 192 493-684 17-222 (222)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 8.6E-36 1.9E-40 309.6 19.9 200 492-691 15-221 (222)
14 cd03284 ABC_MutS1 MutS1 homolo 100.0 2.3E-35 4.9E-40 305.2 17.9 195 493-687 17-215 (216)
15 smart00534 MUTSac ATPase domai 100.0 1.4E-34 3.1E-39 292.0 17.2 184 505-688 1-185 (185)
16 COG1193 Mismatch repair ATPase 100.0 4.3E-34 9.2E-39 337.3 22.1 357 303-691 141-502 (753)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 2.8E-33 6.1E-38 287.3 17.7 184 492-675 14-203 (204)
18 KOG0221 Mismatch repair ATPase 100.0 1.5E-32 3.2E-37 305.5 23.1 520 125-694 241-796 (849)
19 cd03281 ABC_MSH5_euk MutS5 hom 100.0 5E-33 1.1E-37 287.2 17.6 184 493-676 15-213 (213)
20 cd03283 ABC_MutS-like MutS-lik 100.0 1.1E-32 2.4E-37 281.8 17.7 184 492-676 12-199 (199)
21 cd03243 ABC_MutS_homologs The 100.0 1.1E-31 2.4E-36 274.1 17.4 185 492-676 16-202 (202)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 9.4E-31 2E-35 267.0 16.7 183 492-676 14-200 (200)
23 COG1126 GlnQ ABC-type polar am 99.9 1.4E-21 2.9E-26 198.8 13.5 148 478-630 3-201 (240)
24 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.6E-21 5.6E-26 203.2 12.8 163 477-644 4-218 (254)
25 COG1116 TauB ABC-type nitrate/ 99.8 6.3E-21 1.4E-25 198.4 13.6 153 477-633 3-200 (248)
26 COG1120 FepC ABC-type cobalami 99.8 6.5E-21 1.4E-25 201.0 13.7 161 478-643 3-218 (258)
27 COG1131 CcmA ABC-type multidru 99.8 8.6E-21 1.9E-25 205.2 14.5 163 478-645 5-218 (293)
28 COG1136 SalX ABC-type antimicr 99.8 1.1E-20 2.4E-25 195.7 13.7 163 478-641 2-219 (226)
29 COG4152 ABC-type uncharacteriz 99.8 4.8E-21 1E-25 197.3 10.8 152 477-633 2-199 (300)
30 PRK13537 nodulation ABC transp 99.8 3.1E-20 6.7E-25 201.9 13.1 163 477-644 7-218 (306)
31 PRK13536 nodulation factor exp 99.8 5.1E-20 1.1E-24 203.0 14.1 164 476-644 40-252 (340)
32 COG1127 Ttg2A ABC-type transpo 99.8 2.7E-20 5.8E-25 192.0 10.2 165 476-645 7-227 (263)
33 COG4555 NatA ABC-type Na+ tran 99.8 2.1E-20 4.5E-25 188.0 6.5 162 478-643 2-212 (245)
34 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.5E-19 3.2E-24 186.1 12.7 153 479-632 2-208 (218)
35 COG1125 OpuBA ABC-type proline 99.8 9.9E-20 2.1E-24 188.7 11.3 154 478-635 2-207 (309)
36 TIGR00960 3a0501s02 Type II (G 99.8 2.8E-19 6E-24 184.0 13.5 152 478-632 2-206 (216)
37 cd03293 ABC_NrtD_SsuB_transpor 99.8 3.4E-19 7.4E-24 184.0 14.2 155 479-634 2-202 (220)
38 cd03265 ABC_DrrA DrrA is the A 99.8 2.5E-19 5.4E-24 185.0 13.0 158 479-641 2-209 (220)
39 TIGR01288 nodI ATP-binding ABC 99.8 4E-19 8.6E-24 192.8 14.7 161 477-642 4-213 (303)
40 cd03259 ABC_Carb_Solutes_like 99.8 3.8E-19 8.3E-24 182.6 13.5 150 479-633 2-200 (213)
41 COG3842 PotA ABC-type spermidi 99.8 6.3E-20 1.4E-24 201.2 7.9 163 476-642 4-215 (352)
42 COG2884 FtsE Predicted ATPase 99.8 5.6E-19 1.2E-23 176.4 13.8 149 478-630 2-202 (223)
43 cd03268 ABC_BcrA_bacitracin_re 99.8 4E-19 8.7E-24 181.8 12.9 151 479-634 2-196 (208)
44 TIGR02211 LolD_lipo_ex lipopro 99.8 6.5E-19 1.4E-23 181.7 14.6 153 478-631 2-208 (221)
45 cd03226 ABC_cobalt_CbiO_domain 99.8 3.7E-19 8E-24 181.8 12.6 139 494-633 13-195 (205)
46 TIGR02673 FtsE cell division A 99.8 5.1E-19 1.1E-23 181.6 13.5 148 478-629 2-201 (214)
47 PRK11247 ssuB aliphatic sulfon 99.8 6.8E-19 1.5E-23 186.9 14.8 160 476-640 11-210 (257)
48 cd03218 ABC_YhbG The ABC trans 99.8 6.8E-19 1.5E-23 182.8 14.2 151 479-634 2-203 (232)
49 cd03214 ABC_Iron-Siderophores_ 99.8 4.1E-19 8.8E-24 178.3 12.1 139 494-634 12-168 (180)
50 cd03219 ABC_Mj1267_LivG_branch 99.8 6.2E-19 1.3E-23 183.6 13.8 156 479-639 2-218 (236)
51 cd03269 ABC_putative_ATPase Th 99.8 5.7E-19 1.2E-23 180.9 13.2 150 479-633 2-197 (210)
52 COG3638 ABC-type phosphate/pho 99.8 3.2E-19 6.8E-24 183.6 11.1 165 477-645 3-229 (258)
53 cd03292 ABC_FtsE_transporter F 99.8 4.7E-19 1E-23 181.7 12.4 147 479-629 2-200 (214)
54 cd03262 ABC_HisP_GlnQ_permease 99.8 5.7E-19 1.2E-23 180.9 13.0 149 479-632 2-203 (213)
55 cd03261 ABC_Org_Solvent_Resist 99.8 7.9E-19 1.7E-23 183.0 14.1 151 479-634 2-207 (235)
56 TIGR01188 drrA daunorubicin re 99.8 7.6E-19 1.6E-23 190.5 14.5 149 493-642 5-202 (302)
57 cd03225 ABC_cobalt_CbiO_domain 99.8 4.5E-19 9.8E-24 181.6 11.9 135 494-629 14-198 (211)
58 TIGR02314 ABC_MetN D-methionin 99.8 7.7E-19 1.7E-23 193.8 14.6 162 478-640 2-217 (343)
59 PRK11629 lolD lipoprotein tran 99.8 1.2E-18 2.7E-23 181.5 15.2 153 478-631 6-212 (233)
60 TIGR02315 ABC_phnC phosphonate 99.8 7.8E-19 1.7E-23 183.7 13.7 152 478-633 2-215 (243)
61 cd03256 ABC_PhnC_transporter A 99.8 1E-18 2.3E-23 182.3 14.6 152 479-634 2-215 (241)
62 cd03246 ABCC_Protease_Secretio 99.8 7.9E-19 1.7E-23 175.2 12.5 144 479-632 2-163 (173)
63 cd03230 ABC_DR_subfamily_A Thi 99.8 2.4E-19 5.1E-24 178.9 8.7 143 479-632 2-163 (173)
64 PRK09536 btuD corrinoid ABC tr 99.8 9.4E-19 2E-23 196.7 14.5 160 477-641 3-216 (402)
65 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.4E-18 3E-23 181.5 14.8 150 478-632 2-200 (236)
66 cd03258 ABC_MetN_methionine_tr 99.8 1.6E-18 3.4E-23 180.4 15.1 162 478-640 2-217 (233)
67 cd03266 ABC_NatA_sodium_export 99.8 9.7E-19 2.1E-23 180.0 13.4 155 478-633 2-205 (218)
68 cd03301 ABC_MalK_N The N-termi 99.8 8.4E-19 1.8E-23 179.9 12.8 150 479-633 2-200 (213)
69 PRK10584 putative ABC transpor 99.8 1.5E-18 3.2E-23 180.0 14.7 155 477-632 6-214 (228)
70 COG3839 MalK ABC-type sugar tr 99.8 2.2E-19 4.8E-24 195.9 8.8 191 477-682 3-242 (338)
71 cd03229 ABC_Class3 This class 99.8 3.7E-19 8.1E-24 178.3 9.4 142 479-629 2-165 (178)
72 cd03263 ABC_subfamily_A The AB 99.8 9.3E-19 2E-23 180.4 12.5 152 479-634 2-202 (220)
73 cd03232 ABC_PDR_domain2 The pl 99.8 3.5E-19 7.5E-24 180.7 9.1 156 477-633 3-178 (192)
74 TIGR03522 GldA_ABC_ATP gliding 99.8 1.2E-18 2.6E-23 189.0 13.9 160 478-643 3-211 (301)
75 cd03224 ABC_TM1139_LivF_branch 99.8 1.3E-18 2.7E-23 179.5 13.2 151 479-634 2-202 (222)
76 PRK11300 livG leucine/isoleuci 99.8 1.5E-18 3.3E-23 182.9 14.0 152 477-633 5-223 (255)
77 TIGR03265 PhnT2 putative 2-ami 99.8 1.1E-18 2.4E-23 193.4 13.6 163 477-643 4-214 (353)
78 cd03296 ABC_CysA_sulfate_impor 99.8 1.8E-18 4E-23 180.8 14.0 152 478-634 3-207 (239)
79 PRK11264 putative amino-acid A 99.8 2.5E-18 5.5E-23 180.7 15.1 158 478-640 4-220 (250)
80 PRK09493 glnQ glutamine ABC tr 99.8 2.1E-18 4.5E-23 180.5 14.2 157 478-639 2-211 (240)
81 PRK11650 ugpC glycerol-3-phosp 99.8 1.4E-18 2.9E-23 192.9 13.5 161 478-642 4-213 (356)
82 cd03227 ABC_Class2 ABC-type Cl 99.8 1.6E-18 3.4E-23 171.6 12.5 124 495-632 11-148 (162)
83 cd03235 ABC_Metallic_Cations A 99.8 1.2E-18 2.7E-23 178.8 12.0 140 493-633 11-201 (213)
84 cd03216 ABC_Carb_Monos_I This 99.8 1.5E-18 3.3E-23 171.8 12.2 142 479-633 2-151 (163)
85 PRK10908 cell division protein 99.8 2.3E-18 4.9E-23 178.1 13.9 148 478-629 2-201 (222)
86 PRK11000 maltose/maltodextrin 99.8 1.4E-18 3E-23 193.7 13.2 160 478-642 4-212 (369)
87 TIGR03608 L_ocin_972_ABC putat 99.8 1.4E-18 3.1E-23 177.1 12.2 138 493-631 10-200 (206)
88 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.1E-18 2.5E-23 178.1 11.4 154 479-637 2-178 (200)
89 PRK13647 cbiO cobalt transport 99.8 1.7E-18 3.7E-23 185.3 13.3 162 477-642 4-216 (274)
90 PRK11153 metN DL-methionine tr 99.8 2.4E-18 5.3E-23 190.0 14.8 163 478-641 2-218 (343)
91 TIGR01166 cbiO cobalt transpor 99.8 1.5E-18 3.2E-23 175.3 12.0 134 493-627 4-189 (190)
92 PRK10895 lipopolysaccharide AB 99.8 2.7E-18 5.9E-23 179.7 14.3 152 478-634 4-207 (241)
93 PRK11432 fbpC ferric transport 99.8 1.8E-18 3.8E-23 191.6 13.4 162 477-643 6-216 (351)
94 PRK13638 cbiO cobalt transport 99.8 2.1E-18 4.5E-23 184.1 13.4 158 478-640 2-212 (271)
95 PRK13644 cbiO cobalt transport 99.8 2.3E-18 4.9E-23 184.4 13.6 159 478-640 2-211 (274)
96 PRK13538 cytochrome c biogenes 99.8 2.4E-18 5.1E-23 176.0 13.1 148 478-630 2-194 (204)
97 TIGR03410 urea_trans_UrtE urea 99.8 1.8E-18 4E-23 179.6 12.4 151 479-634 2-202 (230)
98 TIGR01978 sufC FeS assembly AT 99.8 3.7E-18 8.1E-23 178.3 14.7 147 479-630 2-209 (243)
99 cd03223 ABCD_peroxisomal_ALDP 99.8 9.5E-19 2.1E-23 173.8 9.4 138 480-632 3-155 (166)
100 TIGR03258 PhnT 2-aminoethylpho 99.8 2.1E-18 4.6E-23 191.6 13.2 161 477-642 5-217 (362)
101 PRK10851 sulfate/thiosulfate t 99.8 2.4E-18 5.1E-23 190.8 13.5 160 478-642 3-215 (353)
102 cd03231 ABC_CcmA_heme_exporter 99.8 2.8E-18 6.1E-23 175.2 13.0 145 479-628 2-188 (201)
103 TIGR03411 urea_trans_UrtD urea 99.8 4.6E-18 1E-22 177.9 14.7 151 478-634 3-212 (242)
104 PRK11248 tauB taurine transpor 99.8 2.5E-18 5.5E-23 182.1 12.9 152 478-634 2-199 (255)
105 cd03260 ABC_PstB_phosphate_tra 99.8 4.1E-18 8.9E-23 176.6 14.1 157 479-641 2-217 (227)
106 TIGR03740 galliderm_ABC gallid 99.8 3.2E-18 6.9E-23 177.1 13.1 158 479-641 2-201 (223)
107 PRK13540 cytochrome c biogenes 99.8 4.1E-18 8.9E-23 173.7 13.5 150 478-632 2-194 (200)
108 cd03228 ABCC_MRP_Like The MRP 99.8 2.7E-18 5.8E-23 171.0 11.8 127 495-631 16-161 (171)
109 PRK13637 cbiO cobalt transport 99.8 4.6E-18 9.9E-23 183.2 14.5 164 478-642 3-223 (287)
110 PRK13539 cytochrome c biogenes 99.8 3.9E-18 8.5E-23 174.9 13.2 148 478-630 3-192 (207)
111 PRK11124 artP arginine transpo 99.8 5E-18 1.1E-22 177.8 14.2 159 478-641 3-218 (242)
112 PRK09452 potA putrescine/sperm 99.8 3E-18 6.5E-23 191.2 13.3 162 477-643 14-224 (375)
113 PRK11231 fecE iron-dicitrate t 99.8 3.8E-18 8.3E-23 180.3 13.4 150 478-632 3-206 (255)
114 PRK13635 cbiO cobalt transport 99.8 4.3E-18 9.3E-23 182.8 13.9 155 477-634 5-210 (279)
115 PRK10247 putative ABC transpor 99.8 5.6E-18 1.2E-22 175.9 14.4 151 477-632 7-205 (225)
116 PRK11831 putative ABC transpor 99.8 5.5E-18 1.2E-22 180.8 14.5 148 477-629 7-208 (269)
117 cd03264 ABC_drug_resistance_li 99.8 4E-18 8.7E-23 174.8 12.8 148 479-633 2-198 (211)
118 PRK11607 potG putrescine trans 99.8 3.6E-18 7.9E-23 190.7 13.5 162 477-642 19-228 (377)
119 PRK13548 hmuV hemin importer A 99.8 5.9E-18 1.3E-22 179.5 14.4 151 478-633 3-210 (258)
120 PRK10575 iron-hydroxamate tran 99.8 6.2E-18 1.4E-22 179.9 14.6 153 477-634 11-218 (265)
121 PRK11614 livF leucine/isoleuci 99.8 3.4E-18 7.4E-23 178.5 12.4 152 478-634 6-207 (237)
122 TIGR03873 F420-0_ABC_ATP propo 99.8 5E-18 1.1E-22 179.5 13.8 152 478-634 2-207 (256)
123 PRK13650 cbiO cobalt transport 99.8 4.9E-18 1.1E-22 182.2 13.8 161 478-640 5-216 (279)
124 cd03295 ABC_OpuCA_Osmoprotecti 99.8 6.4E-18 1.4E-22 177.1 14.3 152 479-634 2-206 (242)
125 PRK14250 phosphate ABC transpo 99.8 6.7E-18 1.5E-22 177.1 14.4 158 478-640 4-208 (241)
126 cd03247 ABCC_cytochrome_bd The 99.8 4.1E-18 8.9E-23 170.6 12.1 131 495-632 16-164 (178)
127 PRK10253 iron-enterobactin tra 99.8 6.7E-18 1.4E-22 179.6 14.4 154 476-634 6-214 (265)
128 TIGR02982 heterocyst_DevA ABC 99.8 6.9E-18 1.5E-22 174.4 13.9 155 478-633 2-210 (220)
129 cd03294 ABC_Pro_Gly_Bertaine T 99.8 5.4E-18 1.2E-22 180.9 13.5 148 481-633 28-230 (269)
130 cd03257 ABC_NikE_OppD_transpor 99.8 9.1E-18 2E-22 173.6 14.7 156 478-634 2-216 (228)
131 PRK13543 cytochrome c biogenes 99.8 7.6E-18 1.7E-22 173.6 14.0 148 477-629 11-201 (214)
132 cd03213 ABCG_EPDR ABCG transpo 99.8 1.6E-18 3.5E-23 176.2 8.8 155 478-634 4-182 (194)
133 TIGR01189 ccmA heme ABC export 99.8 4.7E-18 1E-22 172.9 12.2 144 479-627 2-189 (198)
134 PRK09544 znuC high-affinity zi 99.8 5.2E-18 1.1E-22 179.5 12.8 150 478-632 5-189 (251)
135 cd03267 ABC_NatA_like Similar 99.8 7E-18 1.5E-22 176.5 13.6 142 492-634 32-224 (236)
136 COG1137 YhbG ABC-type (unclass 99.8 6.4E-19 1.4E-23 177.2 5.4 156 477-643 4-218 (243)
137 PRK13652 cbiO cobalt transport 99.8 8.2E-18 1.8E-22 180.3 14.3 161 478-642 4-216 (277)
138 TIGR03005 ectoine_ehuA ectoine 99.7 7.3E-18 1.6E-22 177.7 13.6 157 479-640 2-223 (252)
139 PRK09984 phosphonate/organopho 99.7 8.7E-18 1.9E-22 178.3 14.2 153 477-634 4-223 (262)
140 COG1118 CysA ABC-type sulfate/ 99.7 2.8E-18 6E-23 182.2 10.2 164 478-645 3-219 (345)
141 cd03215 ABC_Carb_Monos_II This 99.7 2.6E-18 5.6E-23 172.8 9.5 146 477-632 4-172 (182)
142 PRK13633 cobalt transporter AT 99.7 9E-18 1.9E-22 180.2 14.3 156 477-633 4-213 (280)
143 PRK13648 cbiO cobalt transport 99.7 7.9E-18 1.7E-22 179.4 13.7 153 477-632 7-210 (269)
144 PRK13632 cbiO cobalt transport 99.7 9.3E-18 2E-22 179.2 14.2 154 477-633 7-211 (271)
145 PRK15056 manganese/iron transp 99.7 7.4E-18 1.6E-22 180.0 13.4 148 477-628 6-205 (272)
146 cd03245 ABCC_bacteriocin_expor 99.7 6.3E-18 1.4E-22 174.2 12.4 153 478-634 3-208 (220)
147 PRK10619 histidine/lysine/argi 99.7 1E-17 2.2E-22 177.2 14.2 153 477-634 5-222 (257)
148 cd03238 ABC_UvrA The excision 99.7 6.3E-18 1.4E-22 170.1 11.9 135 493-632 7-156 (176)
149 cd03298 ABC_ThiQ_thiamine_tran 99.7 8.8E-18 1.9E-22 172.3 13.2 135 499-634 16-199 (211)
150 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 9.8E-18 2.1E-22 174.2 13.7 151 478-633 23-211 (224)
151 PRK15439 autoinducer 2 ABC tra 99.7 7.9E-18 1.7E-22 194.9 14.4 160 477-641 11-217 (510)
152 cd03254 ABCC_Glucan_exporter_l 99.7 7.3E-18 1.6E-22 174.8 12.3 150 478-632 3-205 (229)
153 PRK13636 cbiO cobalt transport 99.7 1.1E-17 2.4E-22 179.9 14.1 162 477-642 5-220 (283)
154 PRK13643 cbiO cobalt transport 99.7 1.1E-17 2.3E-22 180.5 14.1 164 478-642 2-222 (288)
155 PRK10762 D-ribose transporter 99.7 1E-17 2.3E-22 193.4 14.9 160 478-642 5-219 (501)
156 cd03252 ABCC_Hemolysin The ABC 99.7 1.1E-17 2.4E-22 174.5 13.7 151 479-633 2-205 (237)
157 cd03251 ABCC_MsbA MsbA is an e 99.7 5.9E-18 1.3E-22 176.0 11.5 159 479-641 2-213 (234)
158 PRK13641 cbiO cobalt transport 99.7 1.2E-17 2.6E-22 180.0 14.0 156 478-634 3-215 (287)
159 PRK13639 cbiO cobalt transport 99.7 1.4E-17 3E-22 178.3 14.4 154 478-635 2-208 (275)
160 PRK09700 D-allose transporter 99.7 1.3E-17 2.8E-22 193.0 15.0 161 477-642 5-223 (510)
161 TIGR00968 3a0106s01 sulfate AB 99.7 8.5E-18 1.8E-22 175.9 12.2 159 479-642 2-209 (237)
162 PRK10070 glycine betaine trans 99.7 1.4E-17 3E-22 187.2 14.7 147 493-640 40-241 (400)
163 TIGR01186 proV glycine betaine 99.7 7.9E-18 1.7E-22 187.0 12.6 150 492-642 4-208 (363)
164 cd03244 ABCC_MRP_domain2 Domai 99.7 1.1E-17 2.4E-22 172.5 12.7 151 478-632 3-205 (221)
165 COG1135 AbcC ABC-type metal io 99.7 1.4E-17 3.1E-22 177.2 13.7 162 478-640 2-218 (339)
166 PRK13549 xylose transporter AT 99.7 1.2E-17 2.7E-22 193.0 14.5 161 477-642 5-221 (506)
167 COG0411 LivG ABC-type branched 99.7 3.8E-18 8.2E-23 176.7 9.1 158 478-640 5-226 (250)
168 PRK11022 dppD dipeptide transp 99.7 1.7E-17 3.8E-22 182.0 14.7 162 478-640 4-230 (326)
169 COG1122 CbiO ABC-type cobalt t 99.7 8.9E-18 1.9E-22 176.2 11.8 152 478-633 4-208 (235)
170 PRK10938 putative molybdenum t 99.7 1.3E-17 2.8E-22 192.1 14.1 159 478-641 4-212 (490)
171 TIGR02769 nickel_nikE nickel i 99.7 2.3E-17 4.9E-22 175.6 14.9 155 478-633 3-220 (265)
172 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.7E-17 3.7E-22 173.2 13.7 153 479-634 2-207 (238)
173 PRK15093 antimicrobial peptide 99.7 1.9E-17 4E-22 182.0 14.6 156 478-634 4-229 (330)
174 PRK13651 cobalt transporter AT 99.7 1.8E-17 3.9E-22 180.4 14.2 163 478-641 3-242 (305)
175 PRK14268 phosphate ABC transpo 99.7 2.1E-17 4.5E-22 175.1 14.3 152 477-634 12-223 (258)
176 cd03248 ABCC_TAP TAP, the Tran 99.7 1.7E-17 3.6E-22 171.9 13.3 155 475-632 9-216 (226)
177 COG1117 PstB ABC-type phosphat 99.7 1.1E-17 2.4E-22 169.9 11.4 147 477-630 7-213 (253)
178 PRK14242 phosphate transporter 99.7 2.6E-17 5.6E-22 173.5 14.6 152 477-634 6-218 (253)
179 PRK11701 phnK phosphonate C-P 99.7 1.4E-17 3.1E-22 176.2 12.6 161 477-642 6-230 (258)
180 PRK13649 cbiO cobalt transport 99.7 2.2E-17 4.8E-22 176.9 14.2 162 478-640 3-221 (280)
181 TIGR00972 3a0107s01c2 phosphat 99.7 2.5E-17 5.4E-22 173.1 14.2 157 478-640 2-219 (247)
182 PRK10418 nikD nickel transport 99.7 2.8E-17 6E-22 173.8 14.4 159 478-642 5-219 (254)
183 cd03253 ABCC_ATM1_transporter 99.7 2.4E-17 5.2E-22 171.7 13.7 150 479-633 2-204 (236)
184 PRK13646 cbiO cobalt transport 99.7 2.7E-17 5.8E-22 177.1 14.4 159 478-637 3-219 (286)
185 PRK14237 phosphate transporter 99.7 4.5E-17 9.7E-22 173.6 15.8 162 474-641 17-239 (267)
186 PRK13640 cbiO cobalt transport 99.7 1.9E-17 4.2E-22 177.9 13.1 155 477-634 5-213 (282)
187 PRK13634 cbiO cobalt transport 99.7 2.7E-17 5.8E-22 177.5 14.2 164 478-642 3-224 (290)
188 TIGR02324 CP_lyasePhnL phospho 99.7 2.2E-17 4.8E-22 170.8 13.0 154 478-632 2-217 (224)
189 TIGR02323 CP_lyasePhnK phospho 99.7 2.5E-17 5.3E-22 173.7 13.5 153 477-634 3-219 (253)
190 PRK15112 antimicrobial peptide 99.7 2.6E-17 5.6E-22 175.4 13.7 156 477-633 4-219 (267)
191 PRK14275 phosphate ABC transpo 99.7 3.5E-17 7.6E-22 176.3 14.8 155 474-634 36-251 (286)
192 PRK09580 sufC cysteine desulfu 99.7 3.3E-17 7.2E-22 171.9 14.3 148 478-630 2-210 (248)
193 TIGR01277 thiQ thiamine ABC tr 99.7 2.4E-17 5.3E-22 169.5 12.9 137 497-634 14-199 (213)
194 PRK15079 oligopeptide ABC tran 99.7 3.7E-17 8.1E-22 179.8 15.1 158 477-635 8-233 (331)
195 cd03250 ABCC_MRP_domain1 Domai 99.7 9.5E-18 2.1E-22 171.3 9.7 150 479-631 2-194 (204)
196 cd03234 ABCG_White The White s 99.7 2.7E-17 5.8E-22 170.7 13.1 144 493-637 19-217 (226)
197 PRK13541 cytochrome c biogenes 99.7 2.3E-17 5.1E-22 167.5 12.5 148 478-631 2-189 (195)
198 TIGR01184 ntrCD nitrate transp 99.7 2.2E-17 4.8E-22 172.1 12.4 142 498-640 2-191 (230)
199 PRK11308 dppF dipeptide transp 99.7 3.2E-17 6.9E-22 180.0 14.3 163 477-640 5-231 (327)
200 PRK14245 phosphate ABC transpo 99.7 5.1E-17 1.1E-21 171.1 15.2 158 478-641 4-222 (250)
201 cd03300 ABC_PotA_N PotA is an 99.7 3.9E-17 8.5E-22 170.2 14.2 151 479-634 2-201 (232)
202 PRK14247 phosphate ABC transpo 99.7 5.4E-17 1.2E-21 170.8 14.9 151 478-634 4-215 (250)
203 CHL00131 ycf16 sulfate ABC tra 99.7 4.2E-17 9.1E-22 171.7 14.1 149 477-630 7-216 (252)
204 PRK10419 nikE nickel transport 99.7 4.4E-17 9.4E-22 173.9 14.3 161 478-639 4-227 (268)
205 PRK13642 cbiO cobalt transport 99.7 3.4E-17 7.3E-22 175.5 13.5 155 478-634 5-210 (277)
206 PRK10744 pstB phosphate transp 99.7 4.7E-17 1E-21 172.6 14.4 153 476-634 12-225 (260)
207 COG0410 LivF ABC-type branched 99.7 1.4E-17 3E-22 171.4 9.8 162 477-643 3-216 (237)
208 PRK14273 phosphate ABC transpo 99.7 5.4E-17 1.2E-21 171.3 14.5 152 477-634 7-219 (254)
209 cd03237 ABC_RNaseL_inhibitor_d 99.7 2.6E-17 5.7E-22 173.8 12.1 126 503-629 25-180 (246)
210 PRK11288 araG L-arabinose tran 99.7 3.7E-17 8.1E-22 188.8 14.5 158 478-640 5-216 (501)
211 cd03233 ABC_PDR_domain1 The pl 99.7 1.9E-17 4.1E-22 169.5 10.6 157 477-634 3-190 (202)
212 PRK14248 phosphate ABC transpo 99.7 6.1E-17 1.3E-21 172.4 14.7 154 475-634 19-233 (268)
213 PRK14235 phosphate transporter 99.7 6.5E-17 1.4E-21 172.4 14.8 151 477-633 19-231 (267)
214 PRK10771 thiQ thiamine transpo 99.7 5.1E-17 1.1E-21 169.3 13.6 149 478-633 2-199 (232)
215 COG1124 DppF ABC-type dipeptid 99.7 2.7E-17 6E-22 170.3 11.3 164 478-642 4-220 (252)
216 PRK13645 cbiO cobalt transport 99.7 4.8E-17 1E-21 175.3 13.5 164 476-640 5-227 (289)
217 PRK09473 oppD oligopeptide tra 99.7 5.6E-17 1.2E-21 178.3 14.3 163 477-640 12-238 (330)
218 TIGR03415 ABC_choXWV_ATP choli 99.7 3.3E-17 7.1E-22 183.1 12.5 150 492-642 35-243 (382)
219 TIGR02633 xylG D-xylose ABC tr 99.7 4.6E-17 9.9E-22 187.9 14.2 158 478-640 2-217 (500)
220 PRK13631 cbiO cobalt transport 99.7 6.3E-17 1.4E-21 177.2 14.4 166 475-641 19-253 (320)
221 PRK13546 teichoic acids export 99.7 3.3E-17 7.2E-22 174.8 11.8 141 492-633 35-212 (264)
222 PRK13549 xylose transporter AT 99.7 9.6E-17 2.1E-21 185.7 16.6 156 477-634 259-475 (506)
223 PRK14269 phosphate ABC transpo 99.7 7.1E-17 1.5E-21 169.7 14.0 151 478-634 3-211 (246)
224 PRK13547 hmuV hemin importer A 99.7 6.8E-17 1.5E-21 173.0 13.9 150 478-632 2-223 (272)
225 PRK14256 phosphate ABC transpo 99.7 9.9E-17 2.1E-21 169.1 14.9 157 477-639 4-222 (252)
226 cd03222 ABC_RNaseL_inhibitor T 99.7 4.8E-17 1E-21 163.9 11.8 118 493-629 12-136 (177)
227 PRK10982 galactose/methyl gala 99.7 4.8E-17 1E-21 187.4 13.5 148 493-641 10-211 (491)
228 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 3.4E-17 7.3E-22 159.2 10.3 125 479-629 2-131 (144)
229 TIGR03269 met_CoM_red_A2 methy 99.7 6.1E-17 1.3E-21 187.8 14.3 151 479-634 2-239 (520)
230 PRK14267 phosphate ABC transpo 99.7 9.1E-17 2E-21 169.3 14.4 157 478-640 5-224 (253)
231 PRK14274 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 169.6 15.0 158 477-640 12-230 (259)
232 PRK09700 D-allose transporter 99.7 1E-16 2.2E-21 185.6 15.9 150 477-633 265-478 (510)
233 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.1E-16 2.5E-21 163.7 14.3 150 477-632 6-191 (207)
234 PRK11144 modC molybdate transp 99.7 6E-17 1.3E-21 179.5 13.1 143 499-642 16-207 (352)
235 PRK03695 vitamin B12-transport 99.7 8E-17 1.7E-21 169.9 13.4 138 496-634 11-203 (248)
236 PRK14251 phosphate ABC transpo 99.7 9.2E-17 2E-21 169.1 13.8 158 477-640 4-222 (251)
237 COG4598 HisP ABC-type histidin 99.7 3.7E-17 7.9E-22 162.1 10.0 168 477-651 6-236 (256)
238 TIGR02770 nickel_nikD nickel i 99.7 6.9E-17 1.5E-21 168.2 12.7 143 497-640 2-202 (230)
239 PRK14241 phosphate transporter 99.7 1E-16 2.2E-21 169.7 14.1 150 478-633 5-216 (258)
240 PRK14262 phosphate ABC transpo 99.7 1.3E-16 2.7E-21 168.0 14.6 151 478-634 4-215 (250)
241 TIGR02633 xylG D-xylose ABC tr 99.7 1.3E-16 2.7E-21 184.3 15.9 162 477-640 257-479 (500)
242 COG1119 ModF ABC-type molybden 99.7 6.3E-17 1.4E-21 167.8 11.9 152 473-629 27-237 (257)
243 COG4181 Predicted ABC-type tra 99.7 8.3E-17 1.8E-21 158.6 12.1 165 477-641 6-223 (228)
244 PRK14240 phosphate transporter 99.7 1.2E-16 2.6E-21 168.2 14.2 151 478-634 4-215 (250)
245 cd03297 ABC_ModC_molybdenum_tr 99.7 9.8E-17 2.1E-21 165.0 13.2 135 499-634 16-202 (214)
246 PRK14259 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 171.0 13.8 151 476-632 12-221 (269)
247 PRK14239 phosphate transporter 99.7 1.3E-16 2.8E-21 168.0 14.1 158 477-640 5-223 (252)
248 PRK14244 phosphate ABC transpo 99.7 1.3E-16 2.9E-21 168.0 14.1 156 479-640 7-224 (251)
249 TIGR02142 modC_ABC molybdenum 99.7 9.9E-17 2.2E-21 177.9 13.5 143 499-642 15-210 (354)
250 PRK14270 phosphate ABC transpo 99.7 1.6E-16 3.5E-21 167.4 14.4 158 478-641 5-223 (251)
251 cd03289 ABCC_CFTR2 The CFTR su 99.7 6.7E-17 1.5E-21 173.4 11.7 152 478-633 3-205 (275)
252 COG1129 MglA ABC-type sugar tr 99.7 1.5E-16 3.1E-21 180.8 14.8 161 477-642 8-223 (500)
253 PRK14255 phosphate ABC transpo 99.7 1.9E-16 4.2E-21 166.8 14.8 158 477-640 5-223 (252)
254 PRK10261 glutathione transport 99.7 8.8E-17 1.9E-21 190.5 13.6 169 473-642 8-247 (623)
255 PRK10938 putative molybdenum t 99.7 1E-16 2.2E-21 184.7 13.3 149 476-629 259-466 (490)
256 cd03290 ABCC_SUR1_N The SUR do 99.7 9E-17 1.9E-21 165.8 11.5 139 493-631 13-208 (218)
257 COG3840 ThiQ ABC-type thiamine 99.7 8.6E-17 1.9E-21 159.9 10.7 141 503-643 25-209 (231)
258 PRK14272 phosphate ABC transpo 99.7 2.5E-16 5.3E-21 165.8 14.8 159 478-642 5-225 (252)
259 TIGR01257 rim_protein retinal- 99.7 5.7E-17 1.2E-21 208.6 11.9 167 476-645 1936-2151(2272)
260 PRK14249 phosphate ABC transpo 99.7 2.4E-16 5.1E-21 166.2 14.6 147 477-629 4-210 (251)
261 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.1E-16 2.4E-21 156.9 11.1 128 494-630 12-145 (157)
262 PRK14246 phosphate ABC transpo 99.7 2.1E-16 4.6E-21 167.7 14.0 151 478-634 11-222 (257)
263 COG4619 ABC-type uncharacteriz 99.7 9.9E-17 2.1E-21 157.6 10.4 148 491-638 13-208 (223)
264 cd03299 ABC_ModC_like Archeal 99.7 1.8E-16 3.9E-21 165.7 13.0 138 496-634 14-200 (235)
265 PRK14265 phosphate ABC transpo 99.7 1.7E-16 3.8E-21 169.8 13.2 151 477-633 20-229 (274)
266 PRK14253 phosphate ABC transpo 99.7 3E-16 6.5E-21 165.0 14.8 151 478-634 4-214 (249)
267 PRK14261 phosphate ABC transpo 99.7 2.3E-16 4.9E-21 166.5 13.8 152 477-634 6-218 (253)
268 PRK14254 phosphate ABC transpo 99.7 1.7E-16 3.7E-21 171.0 13.0 149 475-629 37-243 (285)
269 cd03288 ABCC_SUR2 The SUR doma 99.7 3E-16 6.4E-21 166.3 14.5 155 475-633 17-223 (257)
270 PRK15134 microcin C ABC transp 99.7 2.1E-16 4.6E-21 183.8 14.3 165 477-642 5-235 (529)
271 PRK10982 galactose/methyl gala 99.7 3.2E-16 6.9E-21 180.6 15.5 152 477-635 250-462 (491)
272 TIGR03269 met_CoM_red_A2 methy 99.7 3E-16 6.5E-21 182.1 15.1 156 477-633 279-497 (520)
273 PRK14238 phosphate transporter 99.7 2.9E-16 6.4E-21 167.8 13.9 158 477-640 24-242 (271)
274 PRK15064 ABC transporter ATP-b 99.7 1.8E-16 3.9E-21 184.4 13.1 148 478-633 2-221 (530)
275 TIGR01257 rim_protein retinal- 99.7 1.4E-16 3.1E-21 205.0 13.2 164 477-644 928-1140(2272)
276 PRK14271 phosphate ABC transpo 99.7 3.7E-16 8E-21 167.6 14.3 157 477-639 21-237 (276)
277 PRK15439 autoinducer 2 ABC tra 99.7 2.7E-16 5.8E-21 182.3 14.2 147 477-633 268-472 (510)
278 PRK13545 tagH teichoic acids e 99.7 1.3E-16 2.8E-21 182.9 11.3 161 478-640 22-219 (549)
279 PRK10762 D-ribose transporter 99.7 5.2E-16 1.1E-20 179.4 16.1 147 477-633 257-464 (501)
280 cd03236 ABC_RNaseL_inhibitor_d 99.7 2.9E-16 6.4E-21 166.8 12.9 135 494-629 14-203 (255)
281 PRK14264 phosphate ABC transpo 99.7 3.6E-16 7.8E-21 170.0 13.7 151 476-632 44-267 (305)
282 PRK14236 phosphate transporter 99.7 5.2E-16 1.1E-20 165.9 14.7 160 475-640 23-243 (272)
283 TIGR03771 anch_rpt_ABC anchore 99.7 4E-16 8.7E-21 162.0 13.4 130 503-633 6-182 (223)
284 PRK14252 phosphate ABC transpo 99.7 4.8E-16 1E-20 165.3 14.2 152 477-634 16-230 (265)
285 PRK11288 araG L-arabinose tran 99.7 4.3E-16 9.2E-21 180.1 14.6 148 477-633 257-465 (501)
286 PRK13409 putative ATPase RIL; 99.7 3.5E-16 7.6E-21 184.1 14.1 148 476-629 339-518 (590)
287 cd03291 ABCC_CFTR1 The CFTR su 99.7 2.2E-16 4.7E-21 170.1 11.2 150 475-631 37-225 (282)
288 PRK10261 glutathione transport 99.7 3.6E-16 7.8E-21 185.3 14.1 158 476-634 312-534 (623)
289 PRK14243 phosphate transporter 99.7 4.7E-16 1E-20 165.5 13.4 150 477-632 10-218 (264)
290 PRK15134 microcin C ABC transp 99.7 4.3E-16 9.3E-21 181.2 14.2 163 477-640 275-502 (529)
291 COG0444 DppD ABC-type dipeptid 99.7 4.7E-16 1E-20 167.2 13.2 156 478-634 2-224 (316)
292 PRK14258 phosphate ABC transpo 99.7 7.6E-16 1.7E-20 163.5 14.8 153 477-634 7-221 (261)
293 PRK14260 phosphate ABC transpo 99.7 4.8E-16 1E-20 164.8 13.1 147 477-629 7-213 (259)
294 PRK15177 Vi polysaccharide exp 99.7 1.6E-16 3.5E-21 164.1 8.9 136 496-634 2-173 (213)
295 PRK11819 putative ABC transpor 99.7 4.4E-16 9.4E-21 182.3 13.6 145 477-629 6-224 (556)
296 COG3845 ABC-type uncharacteriz 99.7 7.2E-16 1.6E-20 172.5 14.4 161 477-642 4-218 (501)
297 PRK14266 phosphate ABC transpo 99.7 8.5E-16 1.8E-20 161.7 14.1 147 478-630 4-210 (250)
298 PRK14263 phosphate ABC transpo 99.7 7.5E-16 1.6E-20 163.9 13.4 151 477-633 8-217 (261)
299 COG4175 ProV ABC-type proline/ 99.7 4.1E-16 8.9E-21 166.1 11.2 146 495-640 42-241 (386)
300 PRK10636 putative ABC transpor 99.6 5.3E-16 1.1E-20 184.3 13.1 144 478-629 2-210 (638)
301 PRK15064 ABC transporter ATP-b 99.6 6E-16 1.3E-20 180.0 12.8 146 476-629 318-499 (530)
302 COG4525 TauB ABC-type taurine 99.6 7.6E-16 1.6E-20 154.6 10.8 137 494-630 18-198 (259)
303 PRK10535 macrolide transporter 99.6 1.4E-15 3E-20 181.1 14.8 166 477-643 4-222 (648)
304 COG4559 ABC-type hemin transpo 99.6 1.3E-15 2.7E-20 154.9 12.2 151 492-643 12-220 (259)
305 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3.7E-16 8E-21 182.7 9.5 145 477-629 4-222 (552)
306 PRK10636 putative ABC transpor 99.6 8.5E-16 1.8E-20 182.6 12.7 148 474-629 309-491 (638)
307 COG1123 ATPase components of v 99.6 1.1E-15 2.5E-20 174.6 12.8 166 477-643 5-234 (539)
308 PRK10522 multidrug transporter 99.6 1.8E-15 3.9E-20 176.7 14.5 161 477-640 322-525 (547)
309 PRK14257 phosphate ABC transpo 99.6 1.8E-15 4E-20 166.3 13.3 163 476-642 79-302 (329)
310 COG4586 ABC-type uncharacteriz 99.6 4.9E-16 1.1E-20 162.8 8.3 151 495-645 38-238 (325)
311 PLN03211 ABC transporter G-25; 99.6 7.6E-16 1.7E-20 183.3 10.9 151 493-644 80-287 (659)
312 PRK13409 putative ATPase RIL; 99.6 2.1E-15 4.7E-20 177.4 13.3 135 493-629 86-275 (590)
313 TIGR01842 type_I_sec_PrtD type 99.6 2.8E-15 6.1E-20 174.9 13.8 160 477-639 316-528 (544)
314 COG4604 CeuD ABC-type enteroch 99.6 1.2E-15 2.5E-20 153.6 8.8 147 478-629 2-200 (252)
315 COG0396 sufC Cysteine desulfur 99.6 3.2E-15 6.9E-20 153.8 12.1 150 477-631 3-210 (251)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2.4E-15 5.2E-20 175.9 12.6 146 476-629 321-504 (552)
317 COG1134 TagH ABC-type polysacc 99.6 1.1E-15 2.3E-20 158.7 8.4 154 492-646 38-229 (249)
318 PRK11819 putative ABC transpor 99.6 2.8E-15 6.1E-20 175.5 12.5 146 476-629 323-506 (556)
319 PRK11147 ABC transporter ATPas 99.6 3.1E-15 6.8E-20 177.7 12.9 142 478-629 4-217 (635)
320 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 3.2E-15 6.9E-20 179.6 13.1 160 477-642 477-689 (710)
321 PRK13657 cyclic beta-1,2-gluca 99.6 4.1E-15 8.8E-20 175.1 13.3 158 477-639 334-544 (588)
322 TIGR01194 cyc_pep_trnsptr cycl 99.6 7.7E-15 1.7E-19 171.8 14.8 165 476-640 336-546 (555)
323 COG2274 SunT ABC-type bacterio 99.6 1.6E-14 3.5E-19 172.1 17.4 163 477-643 471-686 (709)
324 PRK10790 putative multidrug tr 99.6 5.9E-15 1.3E-19 173.8 13.5 159 476-639 339-549 (592)
325 TIGR01187 potA spermidine/putr 99.6 3.9E-15 8.4E-20 163.4 11.2 134 508-642 1-179 (325)
326 PRK11147 ABC transporter ATPas 99.6 4E-15 8.8E-20 176.8 12.0 148 474-629 316-501 (635)
327 PRK11174 cysteine/glutathione 99.6 6.1E-15 1.3E-19 173.5 13.4 156 477-638 349-557 (588)
328 COG4161 ArtP ABC-type arginine 99.6 1.1E-14 2.4E-19 142.3 12.9 161 478-643 3-220 (242)
329 cd03270 ABC_UvrA_I The excisio 99.6 8.9E-15 1.9E-19 152.6 13.0 75 559-634 131-208 (226)
330 PLN03073 ABC transporter F fam 99.6 6.1E-15 1.3E-19 176.9 13.5 147 476-629 507-688 (718)
331 TIGR01192 chvA glucan exporter 99.6 6.6E-15 1.4E-19 173.4 13.5 153 477-634 334-539 (585)
332 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 3.3E-14 7.2E-19 170.3 19.7 160 477-642 451-662 (686)
333 TIGR02203 MsbA_lipidA lipid A 99.6 3.5E-14 7.7E-19 166.2 19.4 160 477-640 330-543 (571)
334 PRK11160 cysteine/glutathione 99.6 5.6E-15 1.2E-19 173.6 12.5 160 476-639 337-548 (574)
335 PRK11176 lipid transporter ATP 99.6 3.6E-14 7.8E-19 166.7 19.2 158 477-638 341-552 (582)
336 COG4133 CcmA ABC-type transpor 99.6 8.5E-15 1.9E-19 146.6 11.4 134 492-626 13-191 (209)
337 TIGR03375 type_I_sec_LssB type 99.6 8.3E-15 1.8E-19 175.7 13.5 160 476-639 462-674 (694)
338 KOG0057 Mitochondrial Fe/S clu 99.6 3.2E-14 6.9E-19 160.7 16.7 164 477-645 351-566 (591)
339 COG0488 Uup ATPase components 99.6 1E-14 2.2E-19 168.9 13.1 143 478-629 4-214 (530)
340 TIGR02204 MsbA_rel ABC transpo 99.6 1.3E-14 2.7E-19 170.2 13.9 163 477-642 337-552 (576)
341 TIGR00954 3a01203 Peroxysomal 99.6 9.6E-15 2.1E-19 174.2 12.8 150 477-633 451-647 (659)
342 TIGR01846 type_I_sec_HlyB type 99.6 1.5E-14 3.3E-19 173.5 13.9 161 477-641 455-668 (694)
343 TIGR00956 3a01205 Pleiotropic 99.6 1.7E-14 3.7E-19 184.0 14.9 162 478-640 760-979 (1394)
344 TIGR00958 3a01208 Conjugate Tr 99.6 1.5E-14 3.2E-19 174.1 13.6 162 476-642 477-691 (711)
345 PRK10789 putative multidrug tr 99.6 1.6E-14 3.5E-19 169.6 13.4 154 477-634 313-519 (569)
346 TIGR01193 bacteriocin_ABC ABC- 99.6 1.4E-14 3.1E-19 174.1 13.1 158 477-640 473-684 (708)
347 TIGR00955 3a01204 The Eye Pigm 99.6 1.7E-14 3.6E-19 171.1 13.1 153 492-645 36-248 (617)
348 TIGR02857 CydD thiol reductant 99.6 9.6E-14 2.1E-18 161.4 18.9 153 477-633 320-525 (529)
349 PLN03073 ABC transporter F fam 99.5 1.2E-14 2.6E-19 174.3 11.2 150 477-634 177-411 (718)
350 COG4608 AppF ABC-type oligopep 99.5 2E-14 4.3E-19 151.8 11.2 153 478-632 5-177 (268)
351 COG1123 ATPase components of v 99.5 2.7E-14 5.8E-19 163.5 13.2 155 476-630 279-495 (539)
352 KOG0059 Lipid exporter ABCA1 a 99.5 9.6E-15 2.1E-19 179.2 10.2 184 476-663 563-801 (885)
353 cd03278 ABC_SMC_barmotin Barmo 99.5 3.1E-14 6.7E-19 145.7 11.6 124 503-632 23-183 (197)
354 COG1101 PhnK ABC-type uncharac 99.5 2.7E-14 5.9E-19 145.5 10.7 142 492-633 17-218 (263)
355 COG0488 Uup ATPase components 99.5 1.9E-13 4.1E-18 158.4 19.1 150 474-630 318-501 (530)
356 TIGR02868 CydC thiol reductant 99.5 4.5E-14 9.8E-19 164.1 13.1 144 477-625 334-529 (529)
357 PLN03140 ABC transporter G fam 99.5 4.3E-14 9.3E-19 180.4 13.8 145 493-638 892-1094(1470)
358 COG4988 CydD ABC-type transpor 99.5 2.3E-13 5.1E-18 155.5 17.9 162 477-643 318-533 (559)
359 cd03274 ABC_SMC4_euk Eukaryoti 99.5 7.2E-14 1.6E-18 144.6 12.4 148 477-633 5-198 (212)
360 COG4987 CydC ABC-type transpor 99.5 7.2E-14 1.6E-18 157.7 11.8 166 477-646 336-554 (573)
361 COG4107 PhnK ABC-type phosphon 99.5 1.9E-13 4.1E-18 135.2 12.5 150 477-631 6-218 (258)
362 cd03272 ABC_SMC3_euk Eukaryoti 99.5 2.3E-13 5E-18 142.5 13.7 71 562-634 155-230 (243)
363 PTZ00265 multidrug resistance 99.5 1.1E-13 2.5E-18 177.0 13.6 75 564-639 578-654 (1466)
364 COG4674 Uncharacterized ABC-ty 99.5 6E-14 1.3E-18 141.2 7.6 150 478-633 6-215 (249)
365 COG1132 MdlB ABC-type multidru 99.5 2.3E-13 5E-18 159.6 13.3 161 477-642 328-541 (567)
366 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.4E-13 5.3E-18 140.3 11.7 128 503-631 28-199 (213)
367 KOG0061 Transporter, ABC super 99.4 3E-13 6.6E-18 159.9 12.0 151 493-644 42-251 (613)
368 COG4148 ModC ABC-type molybdat 99.4 1.4E-13 3.1E-18 144.8 8.1 140 504-644 25-209 (352)
369 KOG0055 Multidrug/pheromone ex 99.4 1.7E-13 3.7E-18 167.2 9.9 165 475-645 348-568 (1228)
370 PTZ00243 ABC transporter; Prov 99.4 3.2E-13 6.9E-18 174.0 12.9 142 493-635 672-852 (1560)
371 TIGR01271 CFTR_protein cystic 99.4 1.5E-13 3.2E-18 176.7 9.5 148 494-642 439-625 (1490)
372 TIGR00956 3a01205 Pleiotropic 99.4 4.2E-13 9E-18 171.5 12.5 150 493-643 73-290 (1394)
373 KOG0927 Predicted transporter 99.4 1.4E-12 2.9E-17 147.3 14.3 158 475-640 387-582 (614)
374 cd03240 ABC_Rad50 The catalyti 99.4 3.8E-13 8.3E-18 138.3 9.1 69 563-632 113-190 (204)
375 COG4618 ArpD ABC-type protease 99.4 1.1E-12 2.4E-17 147.2 13.3 157 476-635 333-542 (580)
376 TIGR00957 MRP_assoc_pro multi 99.4 3.8E-13 8.2E-18 173.4 10.6 162 477-640 636-837 (1522)
377 PLN03232 ABC transporter C fam 99.4 9.2E-13 2E-17 169.6 13.1 162 477-642 1234-1447(1495)
378 COG4778 PhnL ABC-type phosphon 99.4 5.8E-13 1.3E-17 131.5 8.6 152 477-629 4-216 (235)
379 cd03271 ABC_UvrA_II The excisi 99.4 3E-12 6.6E-17 136.6 14.7 74 559-633 163-240 (261)
380 COG4136 ABC-type uncharacteriz 99.4 6E-13 1.3E-17 129.1 8.3 138 492-629 13-199 (213)
381 PLN03232 ABC transporter C fam 99.4 1.7E-12 3.6E-17 167.3 15.1 162 477-640 614-815 (1495)
382 PTZ00265 multidrug resistance 99.4 1.2E-12 2.6E-17 167.7 13.6 160 477-638 1165-1432(1466)
383 PLN03130 ABC transporter C fam 99.4 8.3E-13 1.8E-17 170.6 11.8 162 477-640 614-815 (1622)
384 PLN03140 ABC transporter G fam 99.4 7.7E-13 1.7E-17 169.0 11.3 78 565-643 336-417 (1470)
385 PLN03130 ABC transporter C fam 99.4 1.5E-12 3.2E-17 168.3 13.4 163 477-643 1237-1451(1622)
386 TIGR01271 CFTR_protein cystic 99.4 1.9E-12 4.2E-17 166.5 13.7 154 477-634 1217-1421(1490)
387 TIGR00957 MRP_assoc_pro multi 99.4 2.3E-12 5.1E-17 166.2 13.5 163 476-642 1283-1497(1522)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.4 2.4E-12 5.2E-17 136.0 11.2 68 564-632 154-226 (247)
389 PTZ00243 ABC transporter; Prov 99.4 2.6E-12 5.6E-17 165.7 13.7 162 477-642 1308-1522(1560)
390 COG4172 ABC-type uncharacteriz 99.4 3.6E-12 7.7E-17 139.8 12.1 163 477-640 6-234 (534)
391 KOG0062 ATPase component of AB 99.4 1.7E-12 3.7E-17 145.8 9.7 134 492-629 91-259 (582)
392 cd03273 ABC_SMC2_euk Eukaryoti 99.4 4.3E-12 9.4E-17 134.1 12.2 70 563-634 164-238 (251)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.4 4.3E-12 9.4E-17 130.0 11.8 131 500-630 17-181 (198)
394 KOG0058 Peptide exporter, ABC 99.3 4.7E-12 1E-16 147.6 12.2 157 475-634 463-672 (716)
395 cd03239 ABC_SMC_head The struc 99.3 1.1E-11 2.4E-16 125.1 11.3 123 505-633 24-166 (178)
396 PF00005 ABC_tran: ABC transpo 99.3 3.6E-12 7.9E-17 121.3 6.2 97 497-593 1-137 (137)
397 KOG0056 Heavy metal exporter H 99.3 3E-11 6.4E-16 134.6 14.1 152 476-632 536-740 (790)
398 COG4138 BtuD ABC-type cobalami 99.3 3.9E-12 8.4E-17 126.2 5.5 128 500-628 22-195 (248)
399 COG4172 ABC-type uncharacteriz 99.3 8.1E-12 1.8E-16 137.0 7.5 148 494-642 300-505 (534)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.2 3.6E-11 7.9E-16 124.7 10.8 65 562-627 123-194 (213)
401 KOG0055 Multidrug/pheromone ex 99.2 7.6E-11 1.7E-15 144.5 12.5 166 477-645 987-1205(1228)
402 COG4615 PvdE ABC-type sideroph 99.2 2.6E-10 5.6E-15 125.0 14.3 164 477-643 322-527 (546)
403 COG1245 Predicted ATPase, RNas 99.2 6.2E-11 1.3E-15 131.7 9.4 128 503-630 367-521 (591)
404 KOG0066 eIF2-interacting prote 99.2 5.3E-11 1.1E-15 131.1 8.6 144 481-629 587-765 (807)
405 KOG0927 Predicted transporter 99.1 1E-10 2.2E-15 132.4 9.6 145 477-629 75-283 (614)
406 COG4178 ABC-type uncharacteriz 99.1 7.3E-10 1.6E-14 128.9 16.6 152 475-632 390-581 (604)
407 COG1245 Predicted ATPase, RNas 99.1 1.5E-10 3.2E-15 128.8 9.6 136 503-639 100-287 (591)
408 smart00533 MUTSd DNA-binding d 99.1 1.4E-08 3.1E-13 109.6 23.7 287 141-486 3-303 (308)
409 KOG0065 Pleiotropic drug resis 99.1 1E-10 2.2E-15 143.4 7.1 134 492-626 802-991 (1391)
410 KOG0054 Multidrug resistance-a 99.1 1.5E-09 3.2E-14 135.9 16.6 167 474-642 515-720 (1381)
411 TIGR00630 uvra excinuclease AB 99.1 3.6E-10 7.9E-15 138.5 10.8 73 560-633 823-899 (924)
412 PRK00349 uvrA excinuclease ABC 99.1 5.5E-10 1.2E-14 137.2 12.2 73 560-633 825-901 (943)
413 PRK00635 excinuclease ABC subu 99.0 6.1E-10 1.3E-14 142.6 11.5 75 560-635 804-882 (1809)
414 COG4167 SapF ABC-type antimicr 99.0 1.5E-09 3.3E-14 108.7 9.3 135 495-629 27-214 (267)
415 COG2401 ABC-type ATPase fused 98.9 3.6E-09 7.7E-14 116.8 11.4 137 493-629 395-572 (593)
416 cd03241 ABC_RecN RecN ATPase i 98.9 1.7E-09 3.8E-14 116.2 8.7 50 582-633 192-241 (276)
417 COG3910 Predicted ATPase [Gene 98.9 3.3E-09 7.1E-14 106.8 9.7 58 573-631 137-194 (233)
418 KOG2355 Predicted ABC-type tra 98.9 5.7E-09 1.2E-13 106.3 10.2 148 476-626 12-209 (291)
419 COG4170 SapD ABC-type antimicr 98.9 1.7E-09 3.8E-14 110.2 6.1 136 492-629 18-223 (330)
420 COG5265 ATM1 ABC-type transpor 98.9 7.5E-09 1.6E-13 114.7 10.4 159 477-642 262-475 (497)
421 KOG0060 Long-chain acyl-CoA tr 98.9 5.6E-08 1.2E-12 111.3 16.9 151 476-632 432-634 (659)
422 KOG0054 Multidrug resistance-a 98.8 1.7E-08 3.8E-13 126.6 12.8 161 477-641 1138-1350(1381)
423 PF02463 SMC_N: RecF/RecN/SMC 98.7 8.1E-08 1.8E-12 99.2 12.2 53 579-633 155-207 (220)
424 KOG0064 Peroxisomal long-chain 98.7 1.6E-07 3.5E-12 106.5 14.5 135 492-630 493-674 (728)
425 COG1129 MglA ABC-type sugar tr 98.7 1.9E-07 4.1E-12 107.2 14.9 161 475-644 261-481 (500)
426 TIGR02858 spore_III_AA stage I 98.7 9E-08 2E-12 103.0 9.9 109 504-630 112-234 (270)
427 KOG0062 ATPase component of AB 98.6 1.4E-07 3E-12 106.9 9.4 157 478-642 363-557 (582)
428 COG0178 UvrA Excinuclease ATPa 98.6 2.3E-07 5E-12 109.7 11.2 56 578-634 839-894 (935)
429 KOG0066 eIF2-interacting prote 98.6 7.2E-08 1.6E-12 106.8 6.3 61 565-629 412-473 (807)
430 PRK00635 excinuclease ABC subu 98.6 2.7E-07 5.7E-12 119.0 12.0 71 564-635 1698-1772(1809)
431 PRK08533 flagellar accessory p 98.5 3.6E-07 7.7E-12 96.1 10.5 124 500-626 21-163 (230)
432 PF13304 AAA_21: AAA domain; P 98.5 3E-07 6.5E-12 92.7 8.2 61 567-628 238-302 (303)
433 cd01120 RecA-like_NTPases RecA 98.5 7.3E-07 1.6E-11 85.7 9.5 123 505-627 1-139 (165)
434 cd03242 ABC_RecF RecF is a rec 98.4 9.7E-07 2.1E-11 94.7 9.0 42 580-626 208-249 (270)
435 cd01124 KaiC KaiC is a circadi 98.3 2.1E-06 4.5E-11 85.8 9.8 47 580-627 93-142 (187)
436 PRK13695 putative NTPase; Prov 98.3 2.2E-06 4.9E-11 85.6 9.2 50 580-632 94-143 (174)
437 smart00382 AAA ATPases associa 98.3 8.6E-06 1.9E-10 74.8 11.7 116 503-624 2-125 (148)
438 KOG0217 Mismatch repair ATPase 98.1 2.5E-08 5.4E-13 119.0 -10.2 293 493-791 744-1105(1125)
439 PRK06067 flagellar accessory p 98.1 1.5E-05 3.3E-10 83.4 10.9 125 501-627 23-167 (234)
440 TIGR00630 uvra excinuclease AB 98.1 9.1E-06 2E-10 100.4 10.2 87 550-637 471-561 (924)
441 PRK00349 uvrA excinuclease ABC 98.1 1.1E-05 2.3E-10 100.1 10.0 88 549-637 472-563 (943)
442 cd01131 PilT Pilus retraction 98.0 1.9E-05 4E-10 81.1 9.4 111 504-629 2-113 (198)
443 KOG0063 RNAse L inhibitor, ABC 98.0 8.6E-06 1.9E-10 90.9 6.2 128 503-630 367-522 (592)
444 KOG0065 Pleiotropic drug resis 97.8 3.5E-05 7.7E-10 96.0 8.3 132 494-625 128-321 (1391)
445 TIGR02788 VirB11 P-type DNA tr 97.8 3.5E-05 7.5E-10 84.5 7.2 114 503-630 144-258 (308)
446 TIGR00634 recN DNA repair prot 97.8 0.00015 3.1E-09 86.0 12.0 115 565-689 440-562 (563)
447 cd00009 AAA The AAA+ (ATPases 97.8 0.00012 2.5E-09 68.2 8.8 107 503-627 19-132 (151)
448 PRK07721 fliI flagellum-specif 97.7 0.00014 3E-09 83.5 11.0 144 493-643 145-333 (438)
449 COG3845 ABC-type uncharacteriz 97.7 0.00045 9.7E-09 79.0 14.3 163 474-640 254-479 (501)
450 PRK04296 thymidine kinase; Pro 97.7 0.00023 4.9E-09 72.8 10.9 114 503-626 2-117 (190)
451 KOG0063 RNAse L inhibitor, ABC 97.7 4.3E-05 9.2E-10 85.5 5.9 64 569-633 218-281 (592)
452 PRK10869 recombination and rep 97.7 0.00024 5.3E-09 83.9 12.5 111 569-689 435-552 (553)
453 PTZ00132 GTP-binding nuclear p 97.6 9.3E-05 2E-09 76.2 7.0 34 579-613 167-205 (215)
454 TIGR01420 pilT_fam pilus retra 97.6 0.00017 3.6E-09 80.4 9.4 111 503-628 122-233 (343)
455 cd01125 repA Hexameric Replica 97.6 0.00022 4.8E-09 75.1 9.8 46 580-626 109-160 (239)
456 PRK09183 transposase/IS protei 97.6 0.0003 6.6E-09 75.4 9.8 103 503-625 102-206 (259)
457 cd00820 PEPCK_HprK Phosphoenol 97.6 4.8E-05 1E-09 71.1 3.0 31 494-524 2-36 (107)
458 PRK06793 fliI flagellum-specif 97.5 0.00018 4E-09 82.2 6.6 135 493-631 143-292 (432)
459 cd01130 VirB11-like_ATPase Typ 97.4 0.00025 5.5E-09 71.9 6.7 25 503-527 25-49 (186)
460 PRK14721 flhF flagellar biosyn 97.4 0.00066 1.4E-08 77.5 10.7 88 503-599 191-284 (420)
461 PF00004 AAA: ATPase family as 97.4 0.00052 1.1E-08 64.0 8.3 101 506-628 1-115 (132)
462 cd02023 UMPK Uridine monophosp 97.4 0.00012 2.6E-09 74.6 3.9 23 505-527 1-23 (198)
463 PRK06893 DNA replication initi 97.4 0.00076 1.7E-08 70.8 9.4 94 504-626 40-135 (229)
464 TIGR00618 sbcc exonuclease Sbc 97.3 0.0004 8.6E-09 88.0 8.2 70 561-631 946-1026(1042)
465 PF13555 AAA_29: P-loop contai 97.3 0.0002 4.3E-09 60.5 3.4 25 503-527 23-47 (62)
466 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0025 5.5E-08 66.3 12.4 127 500-626 17-167 (229)
467 PRK14722 flhF flagellar biosyn 97.3 0.0013 2.7E-08 74.2 10.5 85 503-594 137-227 (374)
468 PRK06995 flhF flagellar biosyn 97.3 0.0016 3.4E-08 75.7 11.4 85 503-594 256-346 (484)
469 cd01121 Sms Sms (bacterial rad 97.2 0.0018 4E-08 73.0 11.4 120 502-626 81-211 (372)
470 PRK03918 chromosome segregatio 97.2 0.00066 1.4E-08 84.2 8.2 70 563-633 786-862 (880)
471 PTZ00454 26S protease regulato 97.2 0.0012 2.6E-08 75.1 9.6 102 504-629 180-298 (398)
472 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.002 4.4E-08 67.0 10.6 126 500-625 16-170 (235)
473 PRK11889 flhF flagellar biosyn 97.2 0.0043 9.3E-08 70.3 13.4 87 504-597 242-335 (436)
474 TIGR00416 sms DNA repair prote 97.2 0.0019 4.2E-08 74.7 10.9 119 503-626 94-223 (454)
475 PRK06921 hypothetical protein; 97.2 0.0017 3.7E-08 70.0 9.5 100 504-625 118-225 (266)
476 PRK12727 flagellar biosynthesi 97.2 0.0029 6.2E-08 74.0 11.8 88 503-594 350-440 (559)
477 cd01393 recA_like RecA is a b 97.1 0.0035 7.6E-08 64.9 11.4 30 499-528 15-44 (226)
478 PRK14723 flhF flagellar biosyn 97.1 0.0016 3.4E-08 79.1 10.0 89 503-598 185-280 (767)
479 PHA02562 46 endonuclease subun 97.1 0.00096 2.1E-08 78.6 7.7 68 563-633 466-545 (562)
480 PRK11823 DNA repair protein Ra 97.1 0.0025 5.3E-08 73.7 10.8 120 501-625 78-208 (446)
481 PRK12377 putative replication 97.1 0.0017 3.8E-08 69.3 8.8 105 504-625 102-206 (248)
482 PRK07952 DNA replication prote 97.1 0.00095 2.1E-08 71.1 6.7 106 504-625 100-205 (244)
483 TIGR03015 pepcterm_ATPase puta 97.1 0.0031 6.7E-08 66.9 10.6 24 504-527 44-67 (269)
484 PRK06731 flhF flagellar biosyn 97.1 0.0096 2.1E-07 64.5 14.3 97 503-603 75-176 (270)
485 PF13401 AAA_22: AAA domain; P 97.1 0.0012 2.6E-08 61.9 6.5 111 504-624 5-125 (131)
486 PRK08727 hypothetical protein; 97.1 0.0026 5.6E-08 67.1 9.6 93 504-624 42-135 (233)
487 PRK06526 transposase; Provisio 97.1 0.0022 4.9E-08 68.7 9.2 103 503-625 98-201 (254)
488 PRK10246 exonuclease subunit S 97.0 0.0012 2.6E-08 83.7 8.0 69 561-630 945-1022(1047)
489 cd01128 rho_factor Transcripti 97.0 0.00086 1.9E-08 71.7 5.6 46 580-630 153-199 (249)
490 TIGR00606 rad50 rad50. This fa 97.0 0.0019 4.2E-08 83.6 9.9 69 562-630 1196-1275(1311)
491 PRK12723 flagellar biosynthesi 97.0 0.0085 1.8E-07 68.0 13.7 86 503-595 174-267 (388)
492 PRK10078 ribose 1,5-bisphospho 97.0 0.00043 9.2E-09 70.1 3.0 25 503-527 2-26 (186)
493 cd01122 GP4d_helicase GP4d_hel 97.0 0.0038 8.3E-08 66.6 10.4 30 498-527 25-54 (271)
494 PRK08699 DNA polymerase III su 97.0 0.0014 3.1E-08 72.5 7.4 118 504-627 22-155 (325)
495 PRK14088 dnaA chromosomal repl 97.0 0.0019 4.1E-08 74.5 8.5 104 505-627 132-240 (440)
496 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0042 9.1E-08 64.6 10.1 121 502-625 15-154 (224)
497 TIGR03499 FlhF flagellar biosy 97.0 0.0018 4E-08 70.3 7.5 83 503-592 194-282 (282)
498 TIGR00767 rho transcription te 97.0 0.0015 3.2E-08 74.0 7.0 49 476-527 129-192 (415)
499 COG3854 SpoIIIAA ncharacterize 96.9 0.0025 5.4E-08 66.9 7.8 110 503-630 136-258 (308)
500 PRK09825 idnK D-gluconate kina 96.9 0.00059 1.3E-08 69.0 3.3 25 503-527 3-27 (176)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-67 Score=608.65 Aligned_cols=686 Identities=28% Similarity=0.316 Sum_probs=584.6
Q ss_pred eeeeecCCCceEEEEEeec----cceeeccc--CCCHHHHHHHHhhcCCCcceeecccCCCCCccccccccCCCcccccc
Q 003687 3 VIGVSRSAKGYCIISILET----MKTYSLED--GLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGE 76 (803)
Q Consensus 3 ~~gi~~~~~gy~~~~v~~~----~~~~~~~~--~lt~ea~~~~l~~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (803)
+.+++++++|||.|+..++ |..+..++ +|++|++..++|..++||.|.|.+|..+++ +|+.|+.|+..|.+
T Consensus 181 ~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s---~~~kftpg~kqwWe 257 (1125)
T KOG0217|consen 181 EGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIPPS---FWKKFTPGEKQWWE 257 (1125)
T ss_pred cCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCCCCCccceecCHH---HHhcCCchhhhhhh
Confidence 6789999999999999999 99999998 999999999999999999999999998887 99999999999999
Q ss_pred ccccccc---ccCCCchHHHHHHHHHhhCCCcccceEEEeecCCCCCC---CCchhhhhhhc--cccCCCcccchhhccC
Q 003687 77 CIARHFE---WFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPR---PLHLGTATQIG--AIPTEGIPCLLKVLLP 148 (803)
Q Consensus 77 ~~~~~~~---~~~~~~~~~ll~~v~~~~~~~~~~~f~~~~~~~~~rp~---pl~~~ta~qlg--~~~~~~ip~ll~~~lp 148 (803)
|.+++|+ ||.++-.-+|+.+++..++.+.+..|++++++..++|. |++.++++|.| +.+++++|+.+...+|
T Consensus 258 iKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r 337 (1125)
T KOG0217|consen 258 IKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIR 337 (1125)
T ss_pred hhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhh
Confidence 9999999 99999999999999999999999999999999999999 99999999999 9999999999999999
Q ss_pred CCCCC----chHHHHHhhccCCCchHHHHHHHHHHHHhcccCCCCch--HHH-----HHHHHHhhhhhhHHHH--HHHHH
Q 003687 149 SNCSG----LPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPE--FTC-----LVKLLELREANHIEFC--RIKNV 215 (803)
Q Consensus 149 ~~~~~----~~~~~~r~lll~pP~~~~a~~i~~~~~~~~~~~~~~p~--~~~-----~~~ll~~~~a~~~~~~--~~~~~ 215 (803)
+.+.+ .+|||++++|.+||-+++|..++.+|+.|++++++.|. +++ ......+||.+-.+|| +.++.
T Consensus 338 ~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~~s~ 417 (1125)
T KOG0217|consen 338 ERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRHCSK 417 (1125)
T ss_pred hcccccchhhHHHHHHHHhcCCcchhHHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchhhhH
Confidence 99999 99999999999999999999999999999999999998 555 4567999999999999 79999
Q ss_pred HHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHHHHH----HHHHHhhc-hhcccCC--c-cccccCCCCCCh--
Q 003687 216 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR----LASVRIGE-MISLDGE--S-DQKICSYDNIPS-- 285 (803)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~c~----~~~~~i~~-~v~~~~~--~-~~~~~~~~~i~~-- 285 (803)
++.+|.+++-.|+-...+.|.+|||..++.++......|.|+ |..+++.. ||+.+-- + -+-.++....|.
T Consensus 418 L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek~~~eii~~dy~~~~g~e~~~sil~~p~~~ 497 (1125)
T KOG0217|consen 418 LDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEKTGREIISEDYFESLGLEDSPSILKSPNTD 497 (1125)
T ss_pred HHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhhHHHHHhhhhhhhcccccCchhhccCCCcc
Confidence 999999999999999999999999999999999999999999 77776666 7765410 0 111222233343
Q ss_pred -hHHhhhhhhhccccccccchHHHHHHHHHHHHHHHH---HhhchHHHHHHHHhhcCCCCCCCccchhcccccceeeecc
Q 003687 286 -EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLA---VTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGK 361 (803)
Q Consensus 286 -~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~a---i~ed~~~~l~~~~~~~~~l~~~~~ei~~~~~~~~~~~r~~ 361 (803)
+|+-+...+|++||+..++++++-++..-.+....+ +..|+.++.....+.....|+.++++.|..+.-.+|+ |+
T Consensus 498 ~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpf-GK 576 (1125)
T KOG0217|consen 498 KELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPF-GK 576 (1125)
T ss_pred chhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChH-HH
Confidence 677778899999999999999999998888777666 6677777777777766777889999999999888998 88
Q ss_pred ceecccccCCCCccc--cCcccccccCCCC------ccceeeeecHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 003687 362 KFRPTVWASTPGEEQ--IKQLKPAVDSKGR------KVGEEWFSTLKVEEALERYHEAGAK------AKAKVLELLRGLS 427 (803)
Q Consensus 362 r~~~~v~~~~~~~~~--i~~lv~~~~~~g~------~v~~e~~~t~~l~~~l~~~~~a~~~------~~~~i~~il~~L~ 427 (803)
|+.. .|...+..++ |++.....+..++ ++...|++++.++.++.|+++.... ...++++-++++.
T Consensus 577 Rllk-~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~ 655 (1125)
T KOG0217|consen 577 RLLK-TWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEIN 655 (1125)
T ss_pred HHHH-HHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHH
Confidence 8776 6887776655 8877777776666 7777889999999999999875443 1111111111100
Q ss_pred HHH-----------------------------------------------------------------------------
Q 003687 428 SEL----------------------------------------------------------------------------- 430 (803)
Q Consensus 428 ~~l----------------------------------------------------------------------------- 430 (803)
..+
T Consensus 656 ~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~ 735 (1125)
T KOG0217|consen 656 KLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLE 735 (1125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHH
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 003687 431 -------------------------------------------------------------------------------- 430 (803)
Q Consensus 431 -------------------------------------------------------------------------------- 430 (803)
T Consensus 736 ~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~ 815 (1125)
T KOG0217|consen 736 EYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLI 815 (1125)
T ss_pred HHHHhcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhhhhcc--cCCceeeEeecCccCCcceEEEecccccccccC--CCceeccccCCC
Q 003687 431 ---QTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPALKDIELDGANCLKMNGLSPYWFDAA--EGSAVHNTVDMQ 503 (803)
Q Consensus 431 ---~~~i~~L~~~~~~~~~a~~l~a~a~~a~--~~~~~~P~i~~~~~~g~~~i~l~~l~p~~~~~~--~~~~VlndIsLG 503 (803)
..+..........++..|++++++..+. ..++|+|++.+. .+....+.++++.|+++... ++.+++|++.+|
T Consensus 816 ~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~-~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g 894 (1125)
T KOG0217|consen 816 VRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVES-TDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELG 894 (1125)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecc-cCCCceeEEecccCceeecCcCCCccccchhhcc
Confidence 0000011111222445566676665543 456899999875 33333577787766665542 356899999994
Q ss_pred -----ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHH
Q 003687 504 -----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 578 (803)
Q Consensus 504 -----eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa 578 (803)
.+..+|||||+|||||||+++.+++|+|.|++||++...++.+|.||+++|+.|.+..+.|||..++.+.+.|+.
T Consensus 895 ~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~ 974 (1125)
T KOG0217|consen 895 GAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILK 974 (1125)
T ss_pred ccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHh
Confidence 456699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEEeCCc-eeeeeE
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQ-TVPTWK 656 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~-l~~tYk 656 (803)
.+++.+||++||.++||.+.+|.+|+.++++++.. .+|..+|+|||+.++....+.+.+...+|...++++. ++|+||
T Consensus 975 ~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYk 1054 (1125)
T KOG0217|consen 975 HATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYK 1054 (1125)
T ss_pred hcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeeh
Confidence 99999999999999999999999999999999976 6899999999999998888889999999998777666 999999
Q ss_pred EeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003687 657 LVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 657 L~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~ 694 (803)
+.+|.|+.|||+++|+++|+|+.||++|.....+++..
T Consensus 1055 l~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~ 1092 (1125)
T KOG0217|consen 1055 LEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKS 1092 (1125)
T ss_pred hccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888654
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2.1e-49 Score=476.76 Aligned_cols=510 Identities=23% Similarity=0.287 Sum_probs=372.5
Q ss_pred CchhhhhhhccccCC--C-cccchhhccCCCCCCchHHHHHhhccCCCchH--HH---HHHHHHHH------HhcccCCC
Q 003687 123 LHLGTATQIGAIPTE--G-IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IA---STIQAICK------LMSKVTCS 188 (803)
Q Consensus 123 l~~~ta~qlg~~~~~--~-ip~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a---~~i~~~~~------~~~~~~~~ 188 (803)
|...|-.+|-|+++. | -.+|+..+ -.-.++.=+|.||.||++|.--. |- +++++... -+...=..
T Consensus 251 lD~~t~~~LEl~~~~~~~~~gSL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~ 329 (840)
T TIGR01070 251 LDAATRRNLELTENLRGGKQNTLFSVL-DETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKE 329 (840)
T ss_pred eCHHHHHhccCCccCCCCCCCcHHHHH-hhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 446677788888763 1 22555544 33335556999999999998642 11 22332222 11123346
Q ss_pred CchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHH---HHHHHHHHHhhc
Q 003687 189 IPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV---EECRLASVRIGE 265 (803)
Q Consensus 189 ~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~c~~~~~~i~~ 265 (803)
+|+++.+...+..+.++-..|..++..+..+-. +.++++..-.|. ...+. ..+....+.|+.
T Consensus 330 i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~------l~~~l~~~~~~~---------l~~l~~~l~~~~~l~~~i~~ 394 (840)
T TIGR01070 330 VGDLERLAARVALGNARPRDLARLRTSLEQLPE------LRALLEELEGPT---------LQALAAQIDDFSELLELLEA 394 (840)
T ss_pred CcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH------HHHHHHhcCcHH---------HHHHHHhcccHHHHHHHHHH
Confidence 899999888888888888777777777664432 222222211110 01111 122333444555
Q ss_pred hhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCCCCc
Q 003687 266 MISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKG 345 (803)
Q Consensus 266 ~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~~~~ 345 (803)
.+.. +.+........|.+.|.+.+ +.+++..+.+...+.+ +..+.++ ..+-..-
T Consensus 395 ~i~~--~~~~~~~~~~~I~~g~~~~L-----------------d~lr~~~~~~~~~l~~----l~~~~~~---~~~i~~l 448 (840)
T TIGR01070 395 ALIE--NPPLVVRDGGLIREGYDEEL-----------------DELRAASREGTDYLAR----LEARERE---RTGIPTL 448 (840)
T ss_pred HHhc--CCccccccCCeeCCCCCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHH---HcCCCce
Confidence 5532 11112222344555555444 3344333333222221 1111121 1111111
Q ss_pred cchhcccccceeeeccceecccccCCCCccccCc-ccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003687 346 EILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLR 424 (803)
Q Consensus 346 ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~-lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~ 424 (803)
.+.|. +..+|.+.+..+.. ..+++ .++..+. .+.++|+++++.++.+++.++.+++.+...+++.
T Consensus 449 k~~~~--------~~~gy~iev~~~~~--~~vp~~~i~~~s~----~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~ 514 (840)
T TIGR01070 449 KVGYN--------AVFGYYIEVTRGQL--HLVPAHYRRRQTL----KNAERYITPELKEKEDKVLEAEGKILALEKELFE 514 (840)
T ss_pred EEEEe--------cCceEEEEEehhhh--hcCCcceEEEEec----cCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 22346666544322 23443 3444333 3457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEecc-cccccccCCCceeccccCCC
Q 003687 425 GLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDMQ 503 (803)
Q Consensus 425 ~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l-~p~~~~~~~~~~VlndIsLG 503 (803)
+|...+..+...+..+...++..|+++++|..+...+||+|++++. ..+.+++. ||.......+.+|+||++++
T Consensus 515 ~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~RHP~le~~~~~~~VpNdi~l~ 589 (840)
T TIGR01070 515 ELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDD-----PQLRIREGRHPVVEQVLRTPFVPNDLEMA 589 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCC-----CcEEEEeeECHHHHhccCCCeEeeeeecC
Confidence 9999999999999999999999999999999999999999999764 24666644 55432111357999999994
Q ss_pred ---ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhC
Q 003687 504 ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 504 ---eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a 580 (803)
++++|||||||||||+||+++.+++|+|+|+|||+..+.++.+|+||+++|..|++..+.|||+.||.+++.|+..+
T Consensus 590 ~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~a 669 (840)
T TIGR01070 590 HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNA 669 (840)
T ss_pred CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEee
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVD 659 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~ 659 (803)
++++|+|+||+|+|||+.+|.+|++++++++.+ .++.+||+||++++..+....+++.|.+|.+...++++.|+||+.+
T Consensus 670 t~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~ 749 (840)
T TIGR01070 670 TENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLP 749 (840)
T ss_pred CCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECC
Confidence 999999999999999999999999999999988 7999999999999999988888999999999888899999999999
Q ss_pred CCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 003687 660 GICRESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 660 G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~ 693 (803)
|.+++|||++||+++|+|++||+||+++++.++.
T Consensus 750 G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~ 783 (840)
T TIGR01070 750 GPASKSYGLAVAALAGLPKEVIARARQILTQLEA 783 (840)
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999974
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=3.4e-49 Score=476.97 Aligned_cols=507 Identities=24% Similarity=0.288 Sum_probs=371.0
Q ss_pred CchhhhhhhccccC-----CCcccchhhccCCCCCCchHHHHHhhccCCCchH--HHHHHHHHHHHhc----------cc
Q 003687 123 LHLGTATQIGAIPT-----EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IASTIQAICKLMS----------KV 185 (803)
Q Consensus 123 l~~~ta~qlg~~~~-----~~ip~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a~~i~~~~~~~~----------~~ 185 (803)
|.-.|-.+|-|+++ .| ||+..+ =.-.++.=+|.||+||++|.--. |-.- +.++..+. ..
T Consensus 265 lD~~tl~~Lei~~~~~~~~~g--SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R-~d~Ve~l~~~~~~~~~l~~~ 340 (854)
T PRK05399 265 LDAATRRNLELTENLRGGRKN--SLLSVL-DRTVTAMGGRLLRRWLHRPLRDREAIEAR-LDAVEELLEDPLLREDLREL 340 (854)
T ss_pred cCHHHHHhccCCccCCCCCCC--cHHHHh-ccCCCcHHHHHHHHHHhCcCCCHHHHHHH-HHHHHHHHhCHHHHHHHHHH
Confidence 33477788888876 33 666554 33334555999999999986532 1111 12222221 23
Q ss_pred CCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHH---HHHHHHHHH
Q 003687 186 TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV---EECRLASVR 262 (803)
Q Consensus 186 ~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~---~~c~~~~~~ 262 (803)
=..+|+++.+...+..+.++...|..++..+..+-. +..+++..-.|. ...+. ..+....+.
T Consensus 341 L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~------l~~~l~~~~~~~---------l~~l~~~l~~~~~l~~~ 405 (854)
T PRK05399 341 LKGVYDLERLLSRIALGRANPRDLAALRDSLEALPE------LKELLAELDSPL---------LAELAEQLDPLEELADL 405 (854)
T ss_pred HhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH------HHHHHHhcCcHH---------HHHHHhhcccHHHHHHH
Confidence 345899999888888888988778777777664432 222222111010 01111 123444455
Q ss_pred hhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCC
Q 003687 263 IGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGG 342 (803)
Q Consensus 263 i~~~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~ 342 (803)
|.+++.. |........+.|.+.|.+.+.+ +++.+.++++....+.....++ ++.
T Consensus 406 i~~~i~~--~~~~~~~~~~~i~~g~~~~Ld~----------lr~~~~~~~~~l~~~~~~~~~~--------------~~~ 459 (854)
T PRK05399 406 LERAIVE--EPPLLIRDGGVIADGYDAELDE----------LRALSDNGKDWLAELEARERER--------------TGI 459 (854)
T ss_pred HHHHHcc--CCchhcccCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHH--------------cCC
Confidence 6666642 1111222234556666554433 3333333333333322221111 211
Q ss_pred CCccchhcccccceeeeccceecccccCCCCccccCc-ccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHH
Q 003687 343 PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLE 421 (803)
Q Consensus 343 ~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~-lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~ 421 (803)
..-.+.|.+ ...|.+.+..... ..+++ .++. ..+.+.++|+|+++.++.+++.++.+++.+...+
T Consensus 460 ~~l~~~~~~--------~~gy~iev~~~~~--~~vp~~~~~~----~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~ 525 (854)
T PRK05399 460 SSLKVGYNK--------VFGYYIEVTKANL--DKVPEDYIRR----QTLKNAERYITPELKELEDKILSAEEKALALEYE 525 (854)
T ss_pred CceEEEEcC--------ceeEEEEEEcchh--hhCChhhhhe----eeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122221 1124444433211 12332 2222 2334567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccccccccc--CCCceeccc
Q 003687 422 LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNT 499 (803)
Q Consensus 422 il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l~p~~~~~--~~~~~Vlnd 499 (803)
+++++...+..+...+..+...++..|+++++|..+...+||+|++++. +.+.+++.+|+.... ..+.+|+||
T Consensus 526 i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~l~i~~~rHP~le~~~~~~~~vpnd 600 (854)
T PRK05399 526 LFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDD-----PGIDIEEGRHPVVEQVLGGEPFVPND 600 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCC-----CCEEEEeccCcEEecccCCCceEecc
Confidence 9999999999999999999999999999999999999999999999864 236666443333222 246799999
Q ss_pred cCC---CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHH
Q 003687 500 VDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 500 IsL---Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
+++ +++++|||||||||||+||+++.+++|+|+|+|||+..+.++.+|+||+++|..|++..+.|+|+.||.+++.+
T Consensus 601 ~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~i 680 (854)
T PRK05399 601 CDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANI 680 (854)
T ss_pred eeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHH
Confidence 999 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeee
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTW 655 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tY 655 (803)
+..+++++|+|+||||+||++.+|.++++++++++.+. ++++||+||++++..++...+++.+.||.+...++++.|+|
T Consensus 681 l~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flY 760 (854)
T PRK05399 681 LNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLH 760 (854)
T ss_pred HHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEE
Confidence 99999999999999999999999999999999999876 59999999999999998888999999999987789999999
Q ss_pred EEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 003687 656 KLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 656 kL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~ 693 (803)
|+.+|.+++|||++||+++|+|++||+||+++++.++.
T Consensus 761 kl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~ 798 (854)
T PRK05399 761 KVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES 798 (854)
T ss_pred EeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999974
No 4
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-48 Score=462.25 Aligned_cols=511 Identities=24% Similarity=0.300 Sum_probs=364.6
Q ss_pred hhhhhhccccCC---CcccchhhccCCCCCCchHHHHHhhccCCCchHH-HHHHHHHH----------HHhcccCCCCch
Q 003687 126 GTATQIGAIPTE---GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEI-ASTIQAIC----------KLMSKVTCSIPE 191 (803)
Q Consensus 126 ~ta~qlg~~~~~---~ip~ll~~~lp~~~~~~~~~~~r~lll~pP~~~~-a~~i~~~~----------~~~~~~~~~~p~ 191 (803)
+|=..|=+.++- +--.-|-++|.....+.=.|-|++||.+|==-.- =..-|.++ .-|...=..+|+
T Consensus 265 ~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~D 344 (843)
T COG0249 265 ATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPD 344 (843)
T ss_pred HHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcC
Confidence 444445556654 2233566777776666778889999988743211 11122222 233334567899
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchh-----hhhhccCCChHHHHHHHHHHHHHhhch
Q 003687 192 FTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPT-----WVATGLKIDFETLVEECRLASVRIGEM 266 (803)
Q Consensus 192 ~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~c~~~~~~i~~~ 266 (803)
++++...+..|-+|-..+-+++..++.+ +++..++.....+. +...+ .++. |.+....+...
T Consensus 345 leRl~~Rl~~~~~~~rDl~~l~~~l~~~------~~i~~~l~~~~~~~~l~~~~~~i~-~~~~------~~e~~~ll~~~ 411 (843)
T COG0249 345 LERLLSRLSLGRASPRDLLRLRDSLEKI------PEIFKLLSSLKSESDLLLLLEDIE-SLDY------LAELLELLETA 411 (843)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHH------HHHHHHHhccccchhhhHHhhhhh-cccc------HHHHHHHHHHH
Confidence 9999999999999997777777775533 33333333333221 11111 1111 22333333333
Q ss_pred hcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCCCCcc
Q 003687 267 ISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGE 346 (803)
Q Consensus 267 v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~~~~e 346 (803)
+.. +....++- ..|...|...+ ++++...+...+.+.+ +..+.+. +.+-..-.
T Consensus 412 i~~--~~~~~~~~-~ii~~g~~~eL-----------------d~lr~~~~~~~~~i~~----le~~~r~---~~gi~slk 464 (843)
T COG0249 412 INE--DPPLAVRD-GIIKEGYNIEL-----------------DELRDLLNNAKEWIAK----LELEERE---RTGIKSLK 464 (843)
T ss_pred hhh--cchhhcch-hHHhcchhHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHH---hcCCchhh
Confidence 321 11111111 34444444433 3333333322111111 1111111 11111111
Q ss_pred chhcccccceeeeccceecccccCCCCccccCcccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003687 347 ILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGL 426 (803)
Q Consensus 347 i~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L 426 (803)
+.|...... .+.+... +...+..++-..-...+.++|+|+++++..+++.++.+.+.....+++.++
T Consensus 465 i~~n~v~Gy--------~ievt~~-----~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~ 531 (843)
T COG0249 465 IKYNKVYGY--------YIEVTKS-----NAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDEL 531 (843)
T ss_pred hhhhcccee--------EEEechh-----ccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223222221 1111110 011111112222234456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEecc-cccccccCCCceeccccCC---
Q 003687 427 SSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDM--- 502 (803)
Q Consensus 427 ~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l-~p~~~~~~~~~~VlndIsL--- 502 (803)
.+.+..+++.+......++..|++.++|..+...+||+|++++. . . +.+++. ||.........+|+||+++
T Consensus 532 ~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~---~-~-l~i~~gRHPvvE~~~~~~fVpNd~~L~~~ 606 (843)
T COG0249 532 REKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDS---N-D-LEIKEGRHPVVEAVLDNGFVPNDIDLSGN 606 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCC---C-C-EEEEecCcchhhhhccCCcccCceeeCCC
Confidence 99999999999999999999999999999999999999999874 1 1 666644 5554333233399999999
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~ 582 (803)
+++++|||||||||||+||++|.+++|||+|+||||+.+.++.+|+||+++|..|++..+.|||+.||.+++.|+..+++
T Consensus 607 ~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~ 686 (843)
T COG0249 607 RRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATE 686 (843)
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCC
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 661 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~ 661 (803)
.|||||||.|+||++.+|.+|+|++++++.+. ++.+||+|||+++..+....+.+.|.||.....++++.|.|++.+|.
T Consensus 687 ~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~ 766 (843)
T COG0249 687 RSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGI 766 (843)
T ss_pred CcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCC
Confidence 99999999999999999999999999999885 99999999999999999888899999999988889999999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003687 662 CRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 662 ~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~ 694 (803)
+.+|||++||+++|+|.+||+||++++.+++..
T Consensus 767 a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~ 799 (843)
T COG0249 767 ADKSYGIHVAKLAGLPEEVIERAREILAELEKE 799 (843)
T ss_pred CCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999754
No 5
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=6.6e-46 Score=444.15 Aligned_cols=443 Identities=23% Similarity=0.297 Sum_probs=346.6
Q ss_pred cCCCCchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHH---HHHHHH
Q 003687 185 VTCSIPEFTCLVKLLELRE-ANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE---ECRLAS 260 (803)
Q Consensus 185 ~~~~~p~~~~~~~ll~~~~-a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~---~c~~~~ 260 (803)
.-+++|++..+.+.+..+. .+..++.+|+.++..+-.+. ..++..-+. . ..--...+.+ .+....
T Consensus 64 ~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~------~~l~~~~~~----~-~~~~L~~~~~~l~~~~~l~ 132 (782)
T PRK00409 64 PFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK------RFIEDLEEE----E-ELPILEEWVAKIRTLPELE 132 (782)
T ss_pred CCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH------HHHHhcccc----c-chhHHHHHHHcCcCcHHHH
Confidence 5567888888777776543 66778888888877554333 222110000 0 0000011111 122233
Q ss_pred HHhhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCC
Q 003687 261 VRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPL 340 (803)
Q Consensus 261 ~~i~~~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l 340 (803)
+.|...+..+ |.++. .++.+++.+++....+...+.+.+..++...+ .
T Consensus 133 ~~i~~~id~~--------------------------g~i~d-~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~-----~ 180 (782)
T PRK00409 133 QEIHNCIDEE--------------------------GEVKD-SASEKLRGIRRQLRRKKSRIREKLESIIRSKS-----L 180 (782)
T ss_pred HHHHHHhCCC--------------------------CEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c
Confidence 4444444221 12222 25557777777777777777665543333211 0
Q ss_pred CCCCccchhcccccceeeeccceecccccCCCCccccCcccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHH
Q 003687 341 GGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVL 420 (803)
Q Consensus 341 ~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~ 420 (803)
.. |.. ...++.++++|+++++.+.+. .+++++|+.+++|.++|.+| ..+.++++++.++..++.+++.
T Consensus 181 ---~~---~L~-d~~it~r~~r~~i~vk~~~~~--~~~g~v~~~s~sg~t~y~ep---~~~~~ln~~l~~l~~~~~~~~~ 248 (782)
T PRK00409 181 ---QK---YLQ-DTIITIRNDRYVLPVKAEYKH--AIKGIVHDQSSSGATLYIEP---QSVVELNNEIRELRNKEEQEIE 248 (782)
T ss_pred ---cc---ccc-cceEEEECCEEEEEechhhhc--cCCCceeeEECCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 01 111 223578899999999887654 68999999999999887664 3577788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEecccccccccCCCceecccc
Q 003687 421 ELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV 500 (803)
Q Consensus 421 ~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l~p~~~~~~~~~~VlndI 500 (803)
+++++|+..+..+...+......+...|+++|.+..+...+||+|.+++. ..+.+++..|+.+ ...++|+||+
T Consensus 249 ~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~-----~~i~l~~~rHPll--~~~~~Vpndi 321 (782)
T PRK00409 249 RILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDE-----GKIDLRQARHPLL--DGEKVVPKDI 321 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCC-----CcEEEcCcCCcee--ccCceECcee
Confidence 99999999999999999999999999999999999999999999999753 3477776655443 2356999999
Q ss_pred CCC---ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccc-cccchhHHHhhhCCCCCCccCCccchHHHHHHHHHH
Q 003687 501 DMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 501 sLG---eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
+++ ++++|||||||||||+||+++++++|+|+|++||+.. +.++.++++|.+++..+++..+.|+|+.+|.++..+
T Consensus 322 ~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 322 SLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred EECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 993 5899999999999999999999999999999999985 789999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeE
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWK 656 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYk 656 (803)
+..+++|+|+|+||||+||||.++.+++.++++++.+.|+++|++||+.++..+......+.+++|.+ +.+++.|+|+
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEEE
Confidence 99899999999999999999999999998999999888999999999999998877777888888876 4578999999
Q ss_pred EeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003687 657 LVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 657 L~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~ 691 (803)
+..|++++|||+++|+++|+|++||++|++++...
T Consensus 480 l~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 514 (782)
T PRK00409 480 LLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGED 514 (782)
T ss_pred EeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999988765
No 6
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.1e-44 Score=432.79 Aligned_cols=470 Identities=24% Similarity=0.290 Sum_probs=362.5
Q ss_pred CCchHHHHHhhccCCCchHHHHHHHH---HHHHhc-ccCCCCchHHHHHHHHHhhh-hhhHH-HHHHHHHHHHHHhhhcC
Q 003687 152 SGLPILYVRDLLLNPPAYEIASTIQA---ICKLMS-KVTCSIPEFTCLVKLLELRE-ANHIE-FCRIKNVLDEILHMYGN 225 (803)
Q Consensus 152 ~~~~~~~~r~lll~pP~~~~a~~i~~---~~~~~~-~~~~~~p~~~~~~~ll~~~~-a~~~~-~~~~~~~~~~~l~~~~~ 225 (803)
+.+-+.+++.+-+...+.++....++ +..++. -.-++++++..+.+.++.+. .+..+ |.+|++.+..+..+.
T Consensus 24 t~~gk~~~~~l~P~~~~~~i~~~l~~~~e~~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~-- 101 (771)
T TIGR01069 24 TPLGKEDAIGLKPPKSVEESKEIIIKLTALGSIENNVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK-- 101 (771)
T ss_pred CHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH--
Confidence 45558888885444444444444333 333332 24456777777777777655 66767 888888877554333
Q ss_pred chHHHHHHhhcchhhhhhccCCChHHHHHH------HHHHHHHhhchhcccCCccccccCCCCCChhHHhhhhhhhcccc
Q 003687 226 SELNEILELLMDPTWVATGLKIDFETLVEE------CRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRV 299 (803)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~------c~~~~~~i~~~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~ 299 (803)
..++.. . +...|.+. +......|.+.+..+ |.+
T Consensus 102 ----~~l~~~-~----------~~~~L~~~~~~l~~~~~l~~~i~~~id~~--------------------------g~i 140 (771)
T TIGR01069 102 ----VLSEHV-L----------DLEILFHLRLNLITLPPLENDIIACIDDD--------------------------GKV 140 (771)
T ss_pred ----HHHhcc-c----------cchHHHHHHhcCCCcHHHHHHHHHHhCCC--------------------------CEE
Confidence 222110 0 11112111 222334555555321 112
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCCCCccchhcccccceeeeccceecccccCCCCccccCc
Q 003687 300 KRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ 379 (803)
Q Consensus 300 ~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~ 379 (803)
+ +.++.+++.+++....+...+.+.+..++.... .. .|.. ...+++|++||+++++++.+. .+++
T Consensus 141 ~-d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~--------~~---~~l~-~~~it~r~~r~vipvk~~~~~--~i~g 205 (771)
T TIGR01069 141 K-DGASEELDAIRESLKALEEEVVKRLHKIIRSKE--------LA---KYLS-DTIVTIRNGRYVLPLKSGFKG--KIKG 205 (771)
T ss_pred C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------hh---hhhc-CceEEEECCEEEEEeeHHHhh--cCCC
Confidence 2 225556777777777776666665443322211 00 1221 234678889999999987554 6899
Q ss_pred ccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 003687 380 LKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR 459 (803)
Q Consensus 380 lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~ 459 (803)
++|+.+++|.++|.+| ..+.++++++.++..++.+++.+++++|+..+..+...|......+...|++++.+..+..
T Consensus 206 ~v~~~S~sg~t~~~ep---~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 206 IVHDTSSSGETFYIEP---QAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA 282 (771)
T ss_pred eEEEEeCCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 3567788888888899999999999999999999999999998888999999999999999
Q ss_pred CCceeeEeecCccCCcceEEEecccccccccCCCceeccccCCC---ceEEEEecCCCChhHHHHHHHhhHhhhhccccc
Q 003687 460 RKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMV 536 (803)
Q Consensus 460 ~~~~~P~i~~~~~~g~~~i~l~~l~p~~~~~~~~~~VlndIsLG---eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~V 536 (803)
.+|++|.+.+. ..+.++++.++++ ...++|++|++++ ++++||||||+|||||||+|+|+.+|++.|++|
T Consensus 283 ~~~~~P~~~~~-----~~i~l~~~rhPll--~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~V 355 (771)
T TIGR01069 283 VKGEFPMPSFT-----GKIILENARHPLL--KEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPI 355 (771)
T ss_pred CCCeeceecCC-----CCEEEccccCcee--cCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCc
Confidence 99999998653 2578887765543 2345999999994 799999999999999999999999999999999
Q ss_pred cccc-cccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 003687 537 PAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 537 pa~~-a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g 615 (803)
|+.. ..++.+++++.+++..+++..+.|+|+.+|.++..++..+++++|+|+|||++|||+.++.+++.++++++.+.|
T Consensus 356 pa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g 435 (771)
T TIGR01069 356 PANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQN 435 (771)
T ss_pred cCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9976 678999999999999999999999999999999999998999999999999999999999999889999999899
Q ss_pred CEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003687 616 CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 616 ~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~ 691 (803)
+++|++||+.++..+.....++.+.+|.++ .+++.|+|+|.+|+++.|||++||+++|+|++||++|++++...
T Consensus 436 ~~viitTH~~eL~~~~~~~~~v~~~~~~~d--~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 436 AQVLITTHYKELKALMYNNEGVENASVLFD--EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred CEEEEECChHHHHHHhcCCCCeEEeEEEEc--CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999888777788888888754 57899999999999999999999999999999999999988775
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-42 Score=385.72 Aligned_cols=327 Identities=24% Similarity=0.305 Sum_probs=279.2
Q ss_pred eccceecccccCCCCccccCcccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003687 359 KGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILV 438 (803)
Q Consensus 359 r~~r~~~~v~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L~~~l~~~i~~L~ 438 (803)
.+-.|.+.++.. +++.+..+|-..+.|...-+|+||+..+.+..+.-..+...-.....+..+...+.+|+..+.
T Consensus 690 sgv~flIEvkns-----~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelr 764 (1070)
T KOG0218|consen 690 SGVDFLIEVKNS-----QIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELR 764 (1070)
T ss_pred cCeeEEEEeccc-----ccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566665532 577777788878888888899999999888877766666555556667778888888888888
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEe-cccccccccCCCceeccccCC----CceEEEEecCC
Q 003687 439 FASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNG 513 (803)
Q Consensus 439 ~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~-~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNG 513 (803)
.+..-++..||++++|..++..+||||+|++. ...|.++ +.||.......+.+||||+.+ +++.+||||||
T Consensus 765 kat~~LatlDCi~SlA~~s~n~nYvRPtfvd~----~~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNM 840 (1070)
T KOG0218|consen 765 KATLNLATLDCILSLAATSCNVNYVRPTFVDG----QQEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNM 840 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccCcccccc----hhhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCC
Confidence 88888888999999999999999999999874 1234444 334433223456689999999 47999999999
Q ss_pred CChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 003687 514 GGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 514 sGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~psLlLLDEP~s 593 (803)
+|||.++|+++++.+|||.|+||||+.+.++.+|.+|++||..|++..+.|||+.||.....++..++..+++||||.|+
T Consensus 841 GGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGR 920 (1070)
T KOG0218|consen 841 GGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGR 920 (1070)
T ss_pred CCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccccc-ccccceeEEEEe-------CCceeeeeEEeeCCCCC
Q 003687 594 GTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIK-NAAYKAMGTEYL-------DGQTVPTWKLVDGICRE 664 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~-~v~~~~m~~~~~-------~~~l~~tYkL~~G~~~~ 664 (803)
||.+.+|.+|+.+.++++.+ ..|.++|+||++.+.++....+ .+.+.||++... .+.+.|+|||+.|.+.+
T Consensus 921 GTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasr 1000 (1070)
T KOG0218|consen 921 GTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASR 1000 (1070)
T ss_pred CCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhc
Confidence 99999999999999999964 5789999999999998876554 567999998542 34678999999999999
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003687 665 SLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 665 S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~ 694 (803)
|||+++|+++++|.+||.||-.+.++++..
T Consensus 1001 SyGlnVAklA~ip~sii~rA~siSeeleke 1030 (1070)
T KOG0218|consen 1001 SYGLNVAKLARIPKSIINRAFSISEELEKE 1030 (1070)
T ss_pred cccccHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998743
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.6e-42 Score=389.81 Aligned_cols=405 Identities=25% Similarity=0.344 Sum_probs=331.3
Q ss_pred HHHHHHhhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhh
Q 003687 257 RLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKAT 336 (803)
Q Consensus 257 ~~~~~~i~~~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~ 336 (803)
..-+.++++||+++.|.|+...|.|.|.++|.+.+.+ +++.+++++.-+.+++..+..||.
T Consensus 427 ~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~e----------Lrq~LdeL~~~m~~~hkrv~~dl~--------- 487 (902)
T KOG0219|consen 427 LKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQE----------LREKLDELERKMEKLHKKVSADLG--------- 487 (902)
T ss_pred hhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcC---------
Confidence 3446788899999999999999999999999999988 889999999999999999999975
Q ss_pred cCCCCCCCccchhcccccceeeeccceecccccCCCCccccCcccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHH
Q 003687 337 TAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAK 416 (803)
Q Consensus 337 ~~~l~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~ 416 (803)
+. .++++.....+...|. |+.+.+. +..++.-.|...-+.++. ..+|||.++..++++|-+...+..
T Consensus 488 ---~D-~~kklkLe~~~~~G~~----~RlTr~e----~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y~ 554 (902)
T KOG0219|consen 488 ---LD-PKKQLKLENSAQFGWY----FRVTRKE----EKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEYD 554 (902)
T ss_pred ---CC-cccceeeeccchhhee----eeeeehh----hhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHHH
Confidence 22 2233333333344452 2222111 011111112111122222 467999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cccCCceeeEeecCccCCcceEEEecc-cccccccCCC
Q 003687 417 AKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSE--GRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEG 493 (803)
Q Consensus 417 ~~i~~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~--a~~~~~~~P~i~~~~~~g~~~i~l~~l-~p~~~~~~~~ 493 (803)
+...++.+++......|.+.+..+...++.+|+..+++.. ....+|+||.+.+. |...+.+++- ||.+..-..-
T Consensus 555 ~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~---gs~rl~l~~~rHp~lE~Qd~~ 631 (902)
T KOG0219|consen 555 EAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL---GSKRLELKQSRHPVLEGQDEI 631 (902)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc---chhHHHHHhcccchhhccccC
Confidence 8888888888888777877777777777777765554444 44789999999864 3334555644 4444322344
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e 569 (803)
.+++||+++ +++.+||||||+||||++|+.+-+.+|+|+|+|||++.+.++..|.|+++.|..|+..++.|+||.+
T Consensus 632 ~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~E 711 (902)
T KOG0219|consen 632 PFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAE 711 (902)
T ss_pred CCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHH
Confidence 689999999 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcccccccccceeEEEEeC
Q 003687 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLD 648 (803)
Q Consensus 570 m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~ 648 (803)
|.+.+.|+..+++.+|||+|||++||.+.+|..++|++-+++. +.||..||+||++++..++...+.+.+.||.+...+
T Consensus 712 mleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~ 791 (902)
T KOG0219|consen 712 MLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIEN 791 (902)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecC
Confidence 9999999999999999999999999999999999999999985 558999999999999999999999999999999988
Q ss_pred CceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhcccch
Q 003687 649 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCV 696 (803)
Q Consensus 649 ~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~~~ 696 (803)
+.+.-.|++.+|+|++|||+++|++.|+|+.+|+.|+..+..++...+
T Consensus 792 ~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~ 839 (902)
T KOG0219|consen 792 DDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELV 839 (902)
T ss_pred cchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875533
No 9
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.8e-40 Score=347.40 Aligned_cols=226 Identities=36% Similarity=0.545 Sum_probs=190.3
Q ss_pred ceeeEeecCccCCcceEEEecc-ccccccc-CCCceeccccCCC----ceEEEEecCCCChhHHHHHHHhhHhhhhcccc
Q 003687 462 WVFPALKDIELDGANCLKMNGL-SPYWFDA-AEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLM 535 (803)
Q Consensus 462 ~~~P~i~~~~~~g~~~i~l~~l-~p~~~~~-~~~~~VlndIsLG----eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~ 535 (803)
||+|+|+++ ..+.+++. ||..... .++++|+||+.++ .+++|||||+|||||+||+|+.+++|+|.|+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~ 75 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCF 75 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--
T ss_pred CcccEEcCC-----CCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCce
Confidence 899999874 26777766 4443322 3678999999992 58999999999999999999999999999999
Q ss_pred ccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-c
Q 003687 536 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-I 614 (803)
Q Consensus 536 Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~ 614 (803)
||++.+.++.++.|+++++..|++..+.|+|..||++++.++..+++.+|||+||+++||++.+|.+++++++++|.+ .
T Consensus 76 VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~ 155 (235)
T PF00488_consen 76 VPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKS 155 (235)
T ss_dssp BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 003687 615 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 692 (803)
Q Consensus 615 g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~ 692 (803)
++.+|++||++++........++.+.+|.+...++++.|+|++.+|.+..|||+++|+++|+|++||+||++++++++
T Consensus 156 ~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~ 233 (235)
T PF00488_consen 156 GCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLE 233 (235)
T ss_dssp T-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred cccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 999999999999988877777888999999888999999999999999999999999999999999999999999875
No 10
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.9e-37 Score=320.98 Aligned_cols=193 Identities=36% Similarity=0.565 Sum_probs=183.1
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchH
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs 567 (803)
.+++|+||+++ +++++|+||||+||||++|+++++++|+|.|++||++.+.++.++.||++++..|++..+.|+|+
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHH
Confidence 35799999999 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEE
Q 003687 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~ 646 (803)
.||++++.++..+++|+|+|||||++|||+.++.++++++++++.+. ++++|++||+++++......+++.+.+|.+..
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~ 174 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAV 174 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999876 99999999999998877777788999999876
Q ss_pred eC------CceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHH
Q 003687 647 LD------GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 684 (803)
Q Consensus 647 ~~------~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA 684 (803)
.+ +++.|+||+.+|++++|||+++|+++|+|++||+||
T Consensus 175 ~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 175 KNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred eccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 55 789999999999999999999999999999999987
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-36 Score=343.22 Aligned_cols=315 Identities=21% Similarity=0.297 Sum_probs=280.7
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecC--
Q 003687 393 EEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI-- 470 (803)
Q Consensus 393 ~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~-- 470 (803)
...|++..+.+.++|.++...++.-....++..+..++..++.++..+...+...|++.+++..+...+|++|++++.
T Consensus 514 ~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~sla 593 (867)
T KOG0220|consen 514 SYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDSLA 593 (867)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCcee
Confidence 345789999999999999988888888899999999999999999999999999999988888888889999999986
Q ss_pred ccCCcceEEEecccccccccCCCceeccccCC---CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhH
Q 003687 471 ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 547 (803)
Q Consensus 471 ~~~g~~~i~l~~l~p~~~~~~~~~~VlndIsL---Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d 547 (803)
+.+|+|||- .....++++-|+..+ ..+.+|||||||||||+||+++.+++|||+|+||||..+.+|.|+
T Consensus 594 I~qGRHPIL--------e~i~~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~ 665 (867)
T KOG0220|consen 594 IKQGRHPIL--------EKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFK 665 (867)
T ss_pred eccCCCchh--------hhhcccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHH
Confidence 555666542 223345677888887 479999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 548 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 548 ~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
+||++||-.|++..+.|+|+.||++.+.|+..+++.+||+|||.++||+.++|.++.+++.|++.+....++++||+.++
T Consensus 666 RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFldI 745 (867)
T KOG0220|consen 666 RIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLDI 745 (867)
T ss_pred HHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred hhCcccccccccceeEEEEeCCceee-eeEEeeCCCC-CchHHHHHHHcCCCHHHHHHHHHHHHHhcccchhcccccCCC
Q 003687 628 FSLPLKIKNAAYKAMGTEYLDGQTVP-TWKLVDGICR-ESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPP 705 (803)
Q Consensus 628 ~~~~~~~~~v~~~~m~~~~~~~~l~~-tYkL~~G~~~-~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~~~~~~~~~~~~ 705 (803)
+.++...+.+.+.||..+.+++..++ .|+|..|... .-||+++++..-+|++|++.|+.+..++..+ +...+...
T Consensus 746 a~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~---v~~~~rd~ 822 (867)
T KOG0220|consen 746 AAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQ---ILQNQRDT 822 (867)
T ss_pred HHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHH---HHhhccCc
Confidence 99999999999999998887777664 6999999765 4799999999999999999999999888654 33445567
Q ss_pred ccccccceeEEee
Q 003687 706 PSIIGASCVYVML 718 (803)
Q Consensus 706 p~~~~~~~vy~~~ 718 (803)
|+...+..||.++
T Consensus 823 ~~~~rq~~Vy~~a 835 (867)
T KOG0220|consen 823 PEMERQRAVYHLA 835 (867)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888744
No 12
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.2e-36 Score=312.67 Aligned_cols=192 Identities=34% Similarity=0.481 Sum_probs=178.2
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHH
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~ 568 (803)
.++++||+++ |++++|+||||+||||+||+|+++.++++.|+++|+..+.++.+++|+++++..|++..+.|+|+.
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~ 96 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV 96 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHH
Confidence 4789999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCccc-ccccccceeEEEE
Q 003687 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK-IKNAAYKAMGTEY 646 (803)
Q Consensus 569 em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~-~~~v~~~~m~~~~ 646 (803)
||++++.++..+++++|+|+|||++|||+.++..+++++++++.+. ++++|++||++++..+... ...+.+.+|.+..
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~ 176 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLE 176 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEE
Confidence 9999999999999999999999999999999999988999999887 8999999999999876654 3457788887543
Q ss_pred --------eCCceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHH
Q 003687 647 --------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 684 (803)
Q Consensus 647 --------~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA 684 (803)
.++++.|+|||.+|+++.|||+++|+++|+|++||+||
T Consensus 177 ~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 177 SQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred eccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 34689999999999999999999999999999999997
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=8.6e-36 Score=309.60 Aligned_cols=200 Identities=31% Similarity=0.488 Sum_probs=185.9
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchH
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs 567 (803)
..++|+||+++ +++++|+||||||||||||+|+.+.+++|.|++||+..+.++.++.++.+++..++...+.|+|+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHH
Confidence 45689999998 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccceeEEEE
Q 003687 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~ 646 (803)
.++.+++.++..+++|+|+|||||++||++.++..+.+.+++++.+ .|+++|++||+.++.+++++...+.+++|....
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 9999999999889999999999999999999999998888898875 589999999999998888888888888888776
Q ss_pred eC--CceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003687 647 LD--GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 647 ~~--~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~ 691 (803)
.+ +++.|+||+.+|+++.|||+++|+++|+|++||+||+++.+++
T Consensus 175 ~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 175 DDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred eCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 55 8899999999999999999999999999999999999998775
No 14
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=2.3e-35 Score=305.21 Aligned_cols=195 Identities=36% Similarity=0.534 Sum_probs=185.1
Q ss_pred CceeccccCC---CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH
Q 003687 493 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 493 ~~~VlndIsL---Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e 569 (803)
..+|+||+++ .++++|+|||||||||+||+|+++.++++.|+++|+..+.++.+++++++++..|++..+.|+|..+
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e 96 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVE 96 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHH
Confidence 5689999999 3799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeC
Q 003687 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLD 648 (803)
Q Consensus 570 m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~ 648 (803)
+.+++.++..+++|+++|||||++||++.++..+.+.+++++.+. ++++|++||+.++..+.+....+.+++|.+...+
T Consensus 97 ~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 97 MVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeC
Confidence 999999999999999999999999999999988888999999887 8999999999999888888888889999988888
Q ss_pred CceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 003687 649 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 687 (803)
Q Consensus 649 ~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~ 687 (803)
+++.|+|++.+|.++.|||+++|+++|+|++||+||+++
T Consensus 177 ~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 177 GGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred CeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 999999999999999999999999999999999999986
No 15
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.4e-34 Score=291.99 Aligned_cols=184 Identities=36% Similarity=0.556 Sum_probs=173.8
Q ss_pred eEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCc
Q 003687 505 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 584 (803)
Q Consensus 505 ii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~ps 584 (803)
+++||||||||||||||+|+...++++.|+++|+..+.++.+++++.+++..+++..+.|+|+.++++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCCCC
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 663 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~ 663 (803)
++|+|||++|||+.++..+.+.+++++.+. ++++|++||++++..+.+...++.+.+|.+...++.+.|+|++.+|.++
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 999999999999999999988999998874 8999999999999888777778889999988878889999999999999
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHH
Q 003687 664 ESLAFETAKREGVPETIIQRAEDLY 688 (803)
Q Consensus 664 ~S~al~iA~~~Glp~~Ii~rA~~~~ 688 (803)
.|||+++|+++|+|++|++||++++
T Consensus 161 ~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 161 KSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999863
No 16
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-34 Score=337.33 Aligned_cols=357 Identities=23% Similarity=0.290 Sum_probs=291.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCCCCccchhcccccceeeeccceecccccCCCCccccCcccc
Q 003687 303 HIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKP 382 (803)
Q Consensus 303 ~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~~~~~i~~lv~ 382 (803)
+....+..++.....+...|.+.+...+..- . -.|.. .+.+..|++||++++++.+++ .|++++|
T Consensus 141 ~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~-----------~-~~~L~-e~~v~~r~~r~vlpvk~~fk~--~i~giv~ 205 (753)
T COG1193 141 RASFELDAIRRQLRDLEEEIRDKLESLIRSK-----------E-AKYLQ-DRIVTTRDGREVLPVKAEFKG--AIKGIVH 205 (753)
T ss_pred cccHHHHHHHhhhHHHHHHHHHHHHHHHhhh-----------h-hHhhh-hceEeccCCeEEeHHHHHhhh--hcCceEe
Confidence 4455666666666655555554443222211 0 11222 234678899999999988776 7999999
Q ss_pred cccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Q 003687 383 AVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKW 462 (803)
Q Consensus 383 ~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~ 462 (803)
+.+++|.+++.+|-... ++++++.....+...++.++++++++.+.+++..+......+...|...+.+..+....+
T Consensus 206 d~sssg~tl~ieP~~vv---~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~ 282 (753)
T COG1193 206 DTSSSGATLYIEPRSVV---KLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKG 282 (753)
T ss_pred ecccccCeeeecchHHH---hhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 99999999999975444 555666677777777888999999999999987777666555555555555555566788
Q ss_pred eeeEeecCccCCcceEEEecc-cccccccCCCceeccccCCC---ceEEEEecCCCChhHHHHHHHhhHhhhhccccccc
Q 003687 463 VFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA 538 (803)
Q Consensus 463 ~~P~i~~~~~~g~~~i~l~~l-~p~~~~~~~~~~VlndIsLG---eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa 538 (803)
+.|.+++. ..+.+.+. ||.. ...|++++.++ ..++|||||.+|||+.||+++.+.+|+|.|.++|+
T Consensus 283 v~P~~~~~-----~~l~l~~~~HPll-----~~~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a 352 (753)
T COG1193 283 VKPDFSND-----GVLELLDARHPLL-----KEDVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPA 352 (753)
T ss_pred CCCccCCC-----ceEEeccccCccC-----ccccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeec
Confidence 99999743 34666554 4432 12288999994 68999999999999999999999999999999999
Q ss_pred ccc-ccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCE
Q 003687 539 ESA-SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 617 (803)
Q Consensus 539 ~~a-~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~t 617 (803)
..+ .++.|..+|.++|+.+++.+.+|||+.+|..+..++..+. +|+++||.++||||.+|.+++.++++++.++++.
T Consensus 353 ~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~ 430 (753)
T COG1193 353 LEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAK 430 (753)
T ss_pred cCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccc
Confidence 775 8999999999999999999999999999999999996555 9999999999999999999999999999999999
Q ss_pred EEEEccChhhhhCcccccccccceeEEEEeCCceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003687 618 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 691 (803)
Q Consensus 618 vI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~ 691 (803)
++.+||+.++..+......+.+..|.++ .+++.|+|++..|++++|||+++|.++|+|..++++|+......
T Consensus 431 ~~~tTH~~elk~~~~~~~~v~nas~~fd--~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~ 502 (753)
T COG1193 431 IVATTHYRELKALAAEREGVENASMEFD--AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEE 502 (753)
T ss_pred eehHhhHHHHHHHHhcchhhhchhhhhh--HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCch
Confidence 9999999999999888899999999865 48999999999999999999999999999999999999877543
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.8e-33 Score=287.29 Aligned_cols=184 Identities=28% Similarity=0.389 Sum_probs=172.4
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchH
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs 567 (803)
.+++++||+++ |++++|+||||+||||++|+++++++++++|+++|+..+.++.+++++.+++..+++..+.|+|+
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHH
Confidence 46799999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003687 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~ 647 (803)
.||+++..+++.+++|+++|+|||++|||+.++..+.+++++++.+.|+++|++||+.++++......++.+.+|.++..
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 173 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSI 173 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999988999999999999998777667888999988764
Q ss_pred -CCceeeeeEEeeCCCC-CchHHHHHHHcC
Q 003687 648 -DGQTVPTWKLVDGICR-ESLAFETAKREG 675 (803)
Q Consensus 648 -~~~l~~tYkL~~G~~~-~S~al~iA~~~G 675 (803)
++++.|+||+.+|.+. .|||+++|+.+.
T Consensus 174 ~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 174 NSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 4889999999999999 999999999864
No 18
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-32 Score=305.47 Aligned_cols=520 Identities=18% Similarity=0.230 Sum_probs=348.2
Q ss_pred hhhhhhhccccCCCcccchhhccCCCC----------CCchHHHHHhhccCCCchHHH-----HHHHH--------HHHH
Q 003687 125 LGTATQIGAIPTEGIPCLLKVLLPSNC----------SGLPILYVRDLLLNPPAYEIA-----STIQA--------ICKL 181 (803)
Q Consensus 125 ~~ta~qlg~~~~~~ip~ll~~~lp~~~----------~~~~~~~~r~lll~pP~~~~a-----~~i~~--------~~~~ 181 (803)
--|-+-|-+.|++.=|+-.++-+-.+- +-.-++-||.|+-||-.-.=- +.||- ...-
T Consensus 241 ~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~ 320 (849)
T KOG0221|consen 241 QNTISALQIFPSESHPSKVKSGLKEGLSLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQM 320 (849)
T ss_pred cchHHHHHhcccccccchhhhhhhcchhHHHHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 346677778899988876666655542 122366788888887643211 11111 1122
Q ss_pred hcccCCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCchHHHHHHhhcchhhhhhccCCChHHHHHHHHHHHH
Q 003687 182 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASV 261 (803)
Q Consensus 182 ~~~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~c~~~~~ 261 (803)
|+..-.-+|...-+.+.+++|.+.-.-++-+.+.+. +--+++++..+|.--..... +-.+.+.++-+++..
T Consensus 321 Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~stv~------~~~~i~~~~rslp~s~~~~~---~~~~~~~~~l~eia~ 391 (849)
T KOG0221|consen 321 LSRLLGRIKNVPLILKRMKSGHTKLSDWQVLYSTVY------SALGIRDACRSLPQSIQLFR---DIAQEFSDDLHEIAS 391 (849)
T ss_pred HHHHHhhcccHHHHHHHHhcCCceechHHHHHHHHH------HHHHHHHHHHhCccchhhhh---HHHHHHHHHHHHHHH
Confidence 333334456666677778888777766666666533 34445555555543222221 234567777888888
Q ss_pred HhhchhcccCCccccccCCCCCChhHHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHH-HhhcCCC
Q 003687 262 RIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRI-KATTAPL 340 (803)
Q Consensus 262 ~i~~~v~~~~~~~~~~~~~~~i~~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~-~~~~~~l 340 (803)
.++.||.-++-.++ ...-|.+. +++++++.++....| +.++..+ +++...+
T Consensus 392 ~~g~vIdF~~S~~~---~r~Tv~~g-----------------iD~elDE~r~~y~~l--------p~~Lt~vAr~e~~~L 443 (849)
T KOG0221|consen 392 LIGKVIDFEGSLAE---NRFTVLPG-----------------IDPELDEKRRRYMGL--------PSFLTEVARKELENL 443 (849)
T ss_pred Hhhheecccccccc---ceEEecCC-----------------CChHHHHHHHHHccc--------hHHHHHHHHHHHHhh
Confidence 88888854433332 11112111 222334444333322 1111111 1111223
Q ss_pred CCCCccchhcccccceeeeccceecccccCCC-CccccCccc-ccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHH
Q 003687 341 GGPKGEILYAREHEAVWFKGKKFRPTVWASTP-GEEQIKQLK-PAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 418 (803)
Q Consensus 341 ~~~~~ei~~~~~~~~~~~r~~r~~~~v~~~~~-~~~~i~~lv-~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~ 418 (803)
+.. .++ ..+++++--.|...+..-+. .++.+...- .-...+... -+|.+....++.+.|.+...++.+-
T Consensus 444 ~~~----~ps--v~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~---l~~rnart~eLD~~~GDIy~~i~D~ 514 (849)
T KOG0221|consen 444 DSR----IPS--VSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEK---LHYRNARTKELDALLGDIYCEIRDQ 514 (849)
T ss_pred CCC----CCc--eeEEEeeceeeEEecccccchhhcCCcccchHHHhcccce---eEeecccHHhHHHHhhhHHHhhhhh
Confidence 211 111 33344443344444322111 111111100 001112121 2456667777778888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCceeeEeecCccCCcceEEEecccccccccCCCceecc
Q 003687 419 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHN 498 (803)
Q Consensus 419 i~~il~~L~~~l~~~i~~L~~~~~~~~~a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l~p~~~~~~~~~~Vln 498 (803)
...++-.|..++...-..|...-.+.+..+.++++|..+..++|++|.++++. -.+.++|-+|.......+.+|+|
T Consensus 515 et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~----~il~I~ngrh~l~e~~~dtfvPN 590 (849)
T KOG0221|consen 515 ETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV----LILRIQNGRHPLMELCADTFVPN 590 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH----HHHHHHcCChhHHHHHHHhcCCC
Confidence 77788888777766656666555666777888899998899999999999761 11233333333223334679999
Q ss_pred ccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHH
Q 003687 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 499 dIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~ 574 (803)
+... |++.+|||||.||||.+||+++.+++++++|+||||+.+.++..|+||++|...+++..++|+|+.++.|++
T Consensus 591 st~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva 670 (849)
T KOG0221|consen 591 STEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVA 670 (849)
T ss_pred ceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHH
Confidence 9988 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC---EEEEEccChhhhhCccccc--ccccceeEEE-EeC
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC---LGIVSTHLHGIFSLPLKIK--NAAYKAMGTE-YLD 648 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~---tvI~sTH~~eL~~~~~~~~--~v~~~~m~~~-~~~ 648 (803)
.++..|+..+|+|+||.+.||+..+|..+...++.++.+.|. .|+++||++++.....-.. .+.+..|... .+.
T Consensus 671 ~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~g 750 (849)
T KOG0221|consen 671 KALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDG 750 (849)
T ss_pred HHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhcc
Confidence 999999999999999999999999999999999999987664 5999999999986543222 2334444432 245
Q ss_pred CceeeeeEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 003687 649 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 649 ~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~~~~~~~~~ 694 (803)
+.++|.||+.+|....|+|+.+|+.+|+|++||.||++++..++..
T Consensus 751 e~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg 796 (849)
T KOG0221|consen 751 EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSG 796 (849)
T ss_pred CCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999999999998754
No 19
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5e-33 Score=287.21 Aligned_cols=184 Identities=33% Similarity=0.485 Sum_probs=169.4
Q ss_pred CceeccccCCC----ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHH
Q 003687 493 GSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 493 ~~~VlndIsLG----eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~ 568 (803)
+++|+||++++ ++++|+||||+|||||||+|+....+++.|+++|+..+.++.+++++.+++..+++..+.|+|+.
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~ 94 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMI 94 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHH
Confidence 46999999992 68999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc---CCEEEEEccChhhhhCcc--cccccccceeE
Q 003687 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTHLHGIFSLPL--KIKNAAYKAMG 643 (803)
Q Consensus 569 em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~---g~tvI~sTH~~eL~~~~~--~~~~v~~~~m~ 643 (803)
+|++++.++..+.+++|+|||||++|||+.++..++.++++++.+. +.++|++||+++++.... ..+.+.+.+|.
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~ 174 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTME 174 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEE
Confidence 9999999999999999999999999999999999988999999765 358999999999987654 45678899999
Q ss_pred EEEe------CCceeeeeEEeeCCCCCchHHHHHHHcCC
Q 003687 644 TEYL------DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 644 ~~~~------~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
+..+ .+++.|+|||.+|++++|||+++|+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 175 VLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8665 47899999999999999999999999996
No 20
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=1.1e-32 Score=281.83 Aligned_cols=184 Identities=28% Similarity=0.379 Sum_probs=170.1
Q ss_pred CCceeccccCC--CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH
Q 003687 492 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 492 ~~~~VlndIsL--Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e 569 (803)
.+++|+||+++ |++++|+||||||||||||+|++.+.+++.|.++|+....++ .+.+|..++..|++..+.+.|..+
T Consensus 12 ~~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~e 90 (199)
T cd03283 12 REKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGISYFYAE 90 (199)
T ss_pred CCCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccchhccccccChHHHH
Confidence 35689999999 789999999999999999999999999999999999877666 788999999999999999999999
Q ss_pred HHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003687 570 MSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 570 m~~l~~iLa~a~--~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~ 647 (803)
+.++..++..+. +|+++|+|||++|||+.++..+...+++.+.+.+.++|++||+++++......+++.+.+|.....
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~ 170 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDID 170 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEE
Confidence 999999999988 999999999999999999988877888988888999999999999988777778889999999888
Q ss_pred CCceeeeeEEeeCCCCCchHHHHHHHcCC
Q 003687 648 DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 648 ~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
++++.|+|++.+|+|+.|||+++|+++|+
T Consensus 171 ~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 171 DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999999986
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.97 E-value=1.1e-31 Score=274.11 Aligned_cols=185 Identities=43% Similarity=0.640 Sum_probs=173.3
Q ss_pred CCceeccccCC--CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH
Q 003687 492 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 492 ~~~~VlndIsL--Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e 569 (803)
..++++||+++ |++++|+||||||||||||+|++..++++.|+++|+....++.+++++..++..+++....++|+.+
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e 95 (202)
T cd03243 16 GETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAE 95 (202)
T ss_pred CCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHH
Confidence 46789999999 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCC
Q 003687 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 649 (803)
Q Consensus 570 m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~ 649 (803)
++++..+++.+.+|+++|+|||++|||+.++..+.+.+++.+.+.+.++|++||+.++.........+.+++|..+...+
T Consensus 96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence 99999999999999999999999999999999988888998888899999999999999888777788888998888778
Q ss_pred ceeeeeEEeeCCCCCchHHHHHHHcCC
Q 003687 650 QTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 650 ~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
++.++|++.+|.+..|||+++|+++|+
T Consensus 176 ~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 176 GLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 899999999999999999999999986
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.97 E-value=9.4e-31 Score=267.02 Aligned_cols=183 Identities=30% Similarity=0.477 Sum_probs=164.7
Q ss_pred CCceeccccCC--C-ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccc-cccchhHHHhhhCCCCCCccCCccchH
Q 003687 492 EGSAVHNTVDM--Q-SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 492 ~~~~VlndIsL--G-eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~ig~~d~l~~~~stfs 567 (803)
..+++.+++++ + ++++|+||||||||||||+|+...+++|.|+++|+.. ..++.+++++..++..+++..+.++|+
T Consensus 14 ~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs 93 (200)
T cd03280 14 GEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS 93 (200)
T ss_pred CCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHH
Confidence 35688999999 4 4899999999999999999998889999999999975 567888999999998899999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEe
Q 003687 568 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 647 (803)
Q Consensus 568 ~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~ 647 (803)
.+|+++..++..+.+|+++|+|||++|||+..+..+...+++.+.+.+.++|++||+.++..++++...+.++.+.++
T Consensus 94 ~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~-- 171 (200)
T cd03280 94 SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD-- 171 (200)
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe--
Confidence 999999998888999999999999999999999999878889988889999999999888888777777777777654
Q ss_pred CCceeeeeEEeeCCCCCchHHHHHHHcCC
Q 003687 648 DGQTVPTWKLVDGICRESLAFETAKREGV 676 (803)
Q Consensus 648 ~~~l~~tYkL~~G~~~~S~al~iA~~~Gl 676 (803)
.+++.|+||+.+|.++.|||+++|+++|+
T Consensus 172 ~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 172 PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 57899999999999999999999999996
No 23
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=198.80 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=118.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
|+++|+++.| ++..|+++||+ |++++|+||+|||||||||+|.++.... +.
T Consensus 3 i~i~~l~K~f----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 3 IEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred EEEEeeeEEe----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 6788999887 57899999999 8999999999999999999999986221 11
Q ss_pred cccccccccccchhH-------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESASIPYFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a~i~~~d-------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
-.+|++....+|... .++.++|..+......+.+|++.+| ++.+.+.+.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 224555554444321 2455666666666667788887765 66677789999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
|+|||||+|||+...++. .+++.|++.|.|.|++||++.++..
T Consensus 159 LFDEPTSALDPElv~EVL-~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 159 LFDEPTSALDPELVGEVL-DVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred eecCCcccCCHHHHHHHH-HHHHHHHHcCCeEEEEechhHHHHH
Confidence 999999999999999987 8999999999999999999998863
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=203.23 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=118.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------hcccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLM 535 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----------------q~G~~ 535 (803)
.+.++|++-.| .++ .|+.|||| |++++|+||||||||||+|+|.|++... ....|
T Consensus 4 ~i~v~nl~v~y---~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSY---GNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred EEEEeeeEEEE---CCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 46778887555 323 69999999 8999999999999999999999986211 23457
Q ss_pred cccccc---ccch---------------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 536 VPAESA---SIPY---------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 536 Vpa~~a---~i~~---------------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
||+... .+|. ++..+.+++..+........+|.+.+| +..+.+.+++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 887431 1111 123445556666666667777776555 556777799999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEE
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~ 644 (803)
|+||||||+|+|+.....+. .+++.+++.|+||+++|||++...-.....-..|.++.+
T Consensus 160 lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~ 218 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218 (254)
T ss_pred EEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEe
Confidence 99999999999999888876 899999888999999999998764322222233444443
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.3e-21 Score=198.38 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=118.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----c----------ccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C----------GLMVP 537 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~----------G~~Vp 537 (803)
.+.++++.+.| ++..|++|+|| |++++|+||+|||||||||+|+|+..... . -.+|+
T Consensus 3 ~l~i~~v~~~f----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSF----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEe----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe
Confidence 46677777766 34789999999 89999999999999999999999972211 1 13566
Q ss_pred ccccccchhH------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCC
Q 003687 538 AESASIPYFD------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 592 (803)
Q Consensus 538 a~~a~i~~~d------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~ 592 (803)
|+.+.+|+.. .++..+|..+.........|++|+| .+.+.+.+.+|+++||||||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6666665531 2333445555555566778899987 55666779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 593 sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
++||...+..+...+++...+.+.|++++|||.+++- ++++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdR 200 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADR 200 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCE
Confidence 9999999999988888888888999999999998874 4443
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=6.5e-21 Score=200.98 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=117.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--------------------hhhhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--------------------~laq~G 533 (803)
+.++|++-.| +++.+++|+|| |++++|+||||||||||||+|+|+. .+++.-
T Consensus 3 L~~~~ls~~y----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 3 LEVENLSFGY----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eEEEEEEEEE----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 5667776544 47899999999 8999999999999999999999986 245566
Q ss_pred ccccccccc---cch-------------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 534 LMVPAESAS---IPY-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~---i~~-------------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.|+|+.... +.. .+..+..++..+.......+.|++.+| ...+.+.+++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 678876311 111 111244445555455556667776655 455667799999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-CcccccccccceeE
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
++||||||+.||......++ .+++.+. ++|.|+|+++||++++. ++++..-+..+.+.
T Consensus 159 iLLLDEPTs~LDi~~Q~evl-~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVL-ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred EEEeCCCccccCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999997 7777776 67999999999999874 44443333444433
No 27
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=8.6e-21 Score=205.16 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=120.4
Q ss_pred EEEecccccccccCC-CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcc
Q 003687 478 LKMNGLSPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~-~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G 533 (803)
+.+.++++.| + ++.+++++|| |++++|+||||||||||||+|+|++... +.-
T Consensus 5 i~~~~l~k~~----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 5 IEVRNLTKKY----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeecceEEEe----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 5667888776 4 5799999999 8999999999999999999999997211 122
Q ss_pred ccccccccccch------------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~~------------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.|+|+.....+. ++.++..++..+......++||.+|++ +..+.+.+.+|+|+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 345554332211 223445555555334446789999987 6667788999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhhC-cccccccccceeEEE
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSL-PLKIKNAAYKAMGTE 645 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g-~tvI~sTH~~eL~~~-~~~~~~v~~~~m~~~ 645 (803)
||||+||||..+..+. .+++.+.+.| .|||++||.++.+.. +++..-+..+.+.+.
T Consensus 161 DEPt~GLDp~~~~~~~-~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 161 DEPTSGLDPESRREIW-ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred CCCCcCCCHHHHHHHH-HHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999888875 8888888776 899999999987754 554544555555544
No 28
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.1e-20 Score=195.69 Aligned_cols=163 Identities=14% Similarity=0.150 Sum_probs=117.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------ 529 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------------ 529 (803)
++++++.+.|........++++++| |++++|+||+||||||||++|+|+...
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 3467777766433333679999999 899999999999999999999998611
Q ss_pred hhccccccccccccchh---H---------------------HHhhhCCCCCCcc-CCccchHHHHHH-HHHHHHhCCCC
Q 003687 530 GICGLMVPAESASIPYF---D---------------------AIMLHMKSYDSPA-DGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 530 aq~G~~Vpa~~a~i~~~---d---------------------~I~~~ig~~d~l~-~~~stfs~em~~-l~~iLa~a~~p 583 (803)
.+...||++....++.+ + .++..+|..+... ...+.+|++.+| ++.+.+.+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 12223455544433321 1 1233345554444 446677776665 67777789999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCcccccccccce
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~ 641 (803)
++||.||||.+||...+..+. .++..+ .+.|+|+|++|||.+++.++++...+..+.
T Consensus 162 ~iilADEPTgnLD~~t~~~V~-~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVL-ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred CeEEeeCccccCChHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 999999999999999999997 666666 556999999999999999888765554443
No 29
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.8e-21 Score=197.30 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=117.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh----------------hhhccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------LGICGLMV 536 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~----------------laq~G~~V 536 (803)
.+.++++++.| +++.+++|+|| |++++++||||+||||++|+|.|++. +.....|+
T Consensus 2 ~L~ie~vtK~F----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyL 77 (300)
T COG4152 2 ALEIEGVTKSF----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77 (300)
T ss_pred ceEEecchhcc----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccC
Confidence 36788898887 67889999999 89999999999999999999999972 12233466
Q ss_pred cccccccch------------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 003687 537 PAESASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i~~------------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP 591 (803)
|.+.+..+- .+.++.++.+.+.......++|.+++| +..+.+.+.+|+|+|||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 766544332 123555666666666667788888877 5556667899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 592 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
||||||.+...+ ...+..+++.|+||||+||.++-++ ++++
T Consensus 158 FSGLDPVN~elL-k~~I~~lk~~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 158 FSGLDPVNVELL-KDAIFELKEEGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred ccCCChhhHHHH-HHHHHHHHhcCCEEEEecchHHHHHHHhhh
Confidence 999999987766 5777778889999999999998764 4443
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.83 E-value=3.1e-20 Score=201.94 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=116.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G 533 (803)
.++++++++.| ++..+++++|| |++++|+||||||||||+|+|+|+... .+..
T Consensus 7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 47888998776 34679999999 899999999999999999999998611 1122
Q ss_pred ccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.++|+.....+ ..+. ++..++..+........+|.++++ +..+.+.+.+|+++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 35555433222 1111 122233333333445677888776 5667777999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeEE
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~ 644 (803)
||||+|||+.....+. .+++.+++.|.|+|++||+++.+ .++++...+..+.+..
T Consensus 163 DEPt~gLD~~~~~~l~-~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 163 DEPTTGLDPQARHLMW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999888875 77777777799999999999876 4566555555555543
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=5.1e-20 Score=203.03 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=117.5
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhc
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GIC 532 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~ 532 (803)
..+.++|+++.| +++.+++|+|| |++++|+||||||||||||+|+|+... .+.
T Consensus 40 ~~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 357888998776 35679999999 899999999999999999999998621 112
Q ss_pred cccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 533 GLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
..++|+.....+ ..+ .++..++..+........+|.+|++ +..+.+.+.+|+++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 234555432211 111 1222333333334445678888876 556677799999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeEE
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 644 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~ 644 (803)
|||||+|||+.....+. .++..+.+.|.|+|++||+++.+ .++++...+..+.+..
T Consensus 196 LDEPt~gLD~~~r~~l~-~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 196 LDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred EECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999888886 77777776799999999999876 4566555555554443
No 32
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=2.7e-20 Score=191.95 Aligned_cols=165 Identities=19% Similarity=0.264 Sum_probs=116.5
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hccccccc--------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMVPA-------- 538 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G~~Vpa-------- 538 (803)
..++++++++.+ +++.|+++++| |++++|+||+|+|||||||+|.|+.... ..|..+++
T Consensus 7 ~~I~vr~v~~~f----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSF----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeec----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 357888988765 68899999999 8999999999999999999999986211 11111211
Q ss_pred ---cccccchhHHHhhhCCCCCCccC---------------------------------CccchHHHHHH-HHHHHHhCC
Q 003687 539 ---ESASIPYFDAIMLHMKSYDSPAD---------------------------------GKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 539 ---~~a~i~~~d~I~~~ig~~d~l~~---------------------------------~~stfs~em~~-l~~iLa~a~ 581 (803)
.-+.++|...+|..+++.||+.. ..+.+|.+|++ .+.+.+.+.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 11233444445555555555433 24566778876 455666789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccccccccceeEEE
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~~ 645 (803)
+|+|+++||||+||||.....+- .++..++ ..|.|++++|||.+.. ..+++..-+.++++.+.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 99999999999999999777765 6777775 5699999999998754 44555444445555443
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.1e-20 Score=188.04 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=113.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccc--------c----cccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV--------P----AESA 541 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~V--------p----a~~a 541 (803)
+.+.++++.|- ....++.|++| |++++|.|||||||||+||+|+.++...+.-.++ | ...+
T Consensus 2 l~v~~l~K~y~---~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYG---SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhcc---CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 45677877762 23447899999 8999999999999999999999998544321111 0 0111
Q ss_pred ccchhHHHhhhCCCCCC-------------------------------ccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 542 SIPYFDAIMLHMKSYDS-------------------------------PADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 542 ~i~~~d~I~~~ig~~d~-------------------------------l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
.++.-..++.+++..++ +......||.+|++ +..+.+.+.+|++++||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 11111223333333333 22333456777776 45566678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeE
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
||++|||......+. .++..+++.|.++||+||.++..+ ++++...++.+++.
T Consensus 159 EP~sGLDi~~~r~~~-dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 159 EPTSGLDIRTRRKFH-DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred CCCCCccHHHHHHHH-HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 999999999877775 888999999999999999998775 77766555555544
No 34
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=1.5e-19 Score=186.13 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=102.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ 530 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------ 530 (803)
.+++++..|......+.+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 355665444110001579999998 8999999999999999999999986110
Q ss_pred hccccccccccccc---hh---------------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~---------------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++|+....++ .. ..++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 11223444322111 11 11223333333333444567777665 6667777999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~ 632 (803)
+||||||+|||+.....+. .+++.+.+ .|.++|++||+.+....++
T Consensus 162 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d 208 (218)
T cd03255 162 ILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred EEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 9999999999999888876 66666655 5899999999998765443
No 35
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=9.9e-20 Score=188.74 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=111.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~G 533 (803)
++++|+++.| +++.+++|+|| |++++++||+||||||+||||.+++. +.+..
T Consensus 2 I~~~nvsk~y----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRY----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhc----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 5778888877 37889999999 89999999999999999999999971 11222
Q ss_pred ccccccccccchh------------------------HHHhhhCCCC--CCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 534 LMVPAESASIPYF------------------------DAIMLHMKSY--DSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 534 ~~Vpa~~a~i~~~------------------------d~I~~~ig~~--d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
.||-+..+.+|.. +.++..++.. +......+.+|++.+| +-.+.+.|.+|.++
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 2332322222221 1233334432 2334445566666555 55667778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIK 635 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~ 635 (803)
||||||++|||..+..+-..+.+.-++.|+|+||+|||++.+ .++++..
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 999999999999999998777776678899999999999886 4555443
No 36
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=2.8e-19 Score=183.96 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=104.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.++|++..|. .+.+.+++++|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 l~~~~l~~~~~--~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYP--GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEec--CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 45667665441 112469999998 899999999999999999999998611 0
Q ss_pred hccccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++|+....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11234444432211 1111 222333333333444567777665 6667777999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
+||||||+|||+.....+. .++..+.+.|.++|++||+.+... +++
T Consensus 160 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIM-RLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred EEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999888886 666777666899999999998764 444
No 37
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.4e-19 Score=183.96 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=103.5
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------hcccccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAE 539 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------q~G~~Vpa~ 539 (803)
.+++++..|....+.+.++++++| |++++|+||||||||||+|+|+|+.... +...++|+.
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 355665544110111579999998 8999999999999999999999986210 112344543
Q ss_pred ccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 003687 540 SASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 540 ~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sG 594 (803)
...++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 32111 111 1222333333333445667777765 6667777899999999999999
Q ss_pred CChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccc
Q 003687 595 TETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
||+.....+. .+++.+ .+.|.++|++||+.+.. ..+++.
T Consensus 162 LD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (220)
T cd03293 162 LDALTREQLQ-EELLDIWRETGKTVLLVTHDIDEAVFLADRV 202 (220)
T ss_pred CCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 9999888886 666665 45589999999999854 445443
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.5e-19 Score=185.00 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=106.0
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLM 535 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~ 535 (803)
.++|++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... +...+
T Consensus 2 ~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 2 EVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred EEEEEEEEE----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 456666554 24579999998 8999999999999999999999985110 11224
Q ss_pred ccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 454432211 111 1222333333333344567776665 566777799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh-Ccccccccccce
Q 003687 591 ICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~-~~~~~~~v~~~~ 641 (803)
||+|||+.....+. .+++.+.+. |.++|++||+.+... .+++...+.++.
T Consensus 158 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 158 PTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred CccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 99999999888876 666666554 899999999998764 454443333333
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.80 E-value=4e-19 Score=192.78 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=112.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G 533 (803)
.+.++|+++.| +++.+++++|| |++++|+||||||||||||+|+|+... ....
T Consensus 4 ~i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46778887665 34679999999 899999999999999999999998621 1112
Q ss_pred ccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.++|+....++ ..+. ++..++..+........+|.++++ +..+.+.+.+|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34555432221 1111 122223333333445667777776 5566777899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
||||+|||+.....+. .+++.+.+.|.|+|++||+++.+. ++++...+..+.+
T Consensus 160 DEPt~gLD~~~~~~l~-~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 160 DEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999888886 677777767999999999998764 5555444444443
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.8e-19 Score=182.56 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=101.6
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMV 536 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~V 536 (803)
.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... +...++
T Consensus 2 ~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 2 ELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred eeeeeEEEe----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 345665544 23578999998 8999999999999999999999986210 112244
Q ss_pred cccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 003687 537 PAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP 591 (803)
|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44322111 111 1222333333333344567777665 5566677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003687 592 CRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~ 633 (803)
|+|||+.....+. .++..+.+ .|.++|++||+.++. .++++
T Consensus 158 t~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 158 LSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 9999999888886 66666654 589999999999865 34443
No 41
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=6.3e-20 Score=201.17 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=119.9
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------hccccccccc---
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------ICGLMVPAES--- 540 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------q~G~~Vpa~~--- 540 (803)
..++++|+++.| ++..+++|+|| |+++.|+|||||||||+||+|+|+.... +....+|.+.
T Consensus 4 ~~l~i~~v~k~y----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeec----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 357889999887 47899999999 8999999999999999999999997322 1122244432
Q ss_pred cccchhHHHhhhCCCCCCccCCcc--------------------------------chHHHHH-HHHHHHHhCCCCcEEE
Q 003687 541 ASIPYFDAIMLHMKSYDSPADGKS--------------------------------SFQVEMS-EIRSIVTATTSRSLVL 587 (803)
Q Consensus 541 a~i~~~d~I~~~ig~~d~l~~~~s--------------------------------tfs~em~-~l~~iLa~a~~psLlL 587 (803)
+.+++--.+|.+|++.+|+..++. ..|.+.+ +.+.+.+.+.+|+++|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 344454556777777776655433 2233333 3555666689999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||||.++||..-+..+...+.+..++.|.|+|++|||.+.+ .++++...+..+..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999998777777788899999999999876 45554444444433
No 42
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.80 E-value=5.6e-19 Score=176.44 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=108.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------- 530 (803)
|.++++++.| .+++.+++|+|| |+++-|+||+|||||||||+|.+.....
T Consensus 2 I~f~~V~k~Y---~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 2 IRFENVSKAY---PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred eeehhhhhhc---CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 5678888776 455779999999 8999999999999999999999976211
Q ss_pred hccccccccccccch------------------------hHHHhhhCCCCCCccCCccchHHHH-HHHHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEM-SEIRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~~------------------------~d~I~~~ig~~d~l~~~~stfs~em-~~l~~iLa~a~~psL 585 (803)
+....|.++.-.++. +...+...|..+......+.+|.+. ++++.+.+.+.+|++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v 158 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV 158 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe
Confidence 111122222211110 0112333344443334445666554 456677777999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+|.||||.+|||..+..|+ .+++.+.+.|.||+++|||.++.+.
T Consensus 159 LlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred EeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHh
Confidence 9999999999999999997 8999999999999999999999864
No 43
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=4e-19 Score=181.76 Aligned_cols=151 Identities=18% Similarity=0.239 Sum_probs=103.0
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------------------hhccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMV 536 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------aq~G~~V 536 (803)
.++++++.| +++.++++++| |++++|+||||||||||+|+|+|+... .+...++
T Consensus 2 ~~~~l~~~~----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 2 KTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred EEEEEEEEE----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 456666554 24579999998 899999999999999999999998521 0112244
Q ss_pred cccccccc---hhHH-----------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 003687 537 PAESASIP---YFDA-----------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 537 pa~~a~i~---~~d~-----------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGL 595 (803)
|+....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|+++||||||+||
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 54432221 1111 122223322223333456666655 56677778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
|+.....+. .+++.+.+.|.++|++||+.+... .+++.
T Consensus 158 D~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 158 DPDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred CHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 999888886 677777667899999999998764 45443
No 44
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.79 E-value=6.5e-19 Score=181.67 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=104.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.+++++..|....+.+.+++++|| |++++|+||||||||||||+|+|+... .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 4566776554211112579999998 899999999999999999999998510 0
Q ss_pred -hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 531 -ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
....++++....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 11234554432211 111 1222333333333445667777765 566667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~ 631 (803)
++||||||+|||+.....+. .++..+.+ .|.++|++||+.+.....
T Consensus 162 illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~ 208 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKL 208 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 99999999999999888886 66666654 589999999999876544
No 45
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.79 E-value=3.7e-19 Score=181.80 Aligned_cols=139 Identities=16% Similarity=0.207 Sum_probs=98.7
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------hhcccccccccc-cc---chh--
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESA-SI---PYF-- 546 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------aq~G~~Vpa~~a-~i---~~~-- 546 (803)
+.++++++| |++++|+||||||||||||+|+|+... .+...++++... .+ ...
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 578999998 899999999999999999999998611 011234444421 11 111
Q ss_pred ---------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 003687 547 ---------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 610 (803)
Q Consensus 547 ---------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~ 610 (803)
..++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 171 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG-ELIRE 171 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHH
Confidence 12233344444344445667777766 55566778999999999999999999888876 67777
Q ss_pred HHhcCCEEEEEccChhhhh-Cccc
Q 003687 611 LDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 611 L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
+.+.|.++|++||+.+... ++++
T Consensus 172 ~~~~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 172 LAAQGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCE
Confidence 7667899999999998764 4443
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=5.1e-19 Score=181.60 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=102.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.++|++..| .+++.+++++|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 l~~~~l~~~~---~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAY---PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEe---CCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 4566776554 124579999998 899999999999999999999998511 0
Q ss_pred hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++++....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 11224444322111 111 1222233333333344567777665 6666777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+||||||+|||+.....+. .+++.+.+.|.++|++||+.+...
T Consensus 159 llLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERIL-DLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 9999999999999888886 666667667899999999998764
No 47
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.79 E-value=6.8e-19 Score=186.94 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=111.2
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------hccccc
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMV 536 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------q~G~~V 536 (803)
..+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... +...++
T Consensus 11 ~~l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 11 TPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CcEEEEEEEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence 457888887765 24579999998 8999999999999999999999986211 112244
Q ss_pred cccccccc---hhH---------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 537 PAESASIP---YFD---------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 537 pa~~a~i~---~~d---------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
++....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 54432221 111 2233344444344455677777766 5666677899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 598 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 598 ~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.....+. .+++.+ .+.+.++|++||+.+.. ..+++...+..+
T Consensus 167 ~~~~~l~-~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 167 LTRIEMQ-DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9888886 555555 45689999999999875 445544333333
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.79 E-value=6.8e-19 Score=182.85 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=102.6
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hcc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICG 533 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~G 533 (803)
.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+.... ...
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 2 RAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred eEEEEEEEe----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 455665544 24579999998 8999999999999999999999986110 112
Q ss_pred ccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.++|+....++ ..+. ++..++..+........+|.++++ +..+.+.+.+|+++||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 23444332211 1111 122223332233334566777665 5667777899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
||||+|||+.....+. .+++.+.+.|.++|++||+.+.. ..+++.
T Consensus 158 DEPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 158 DEPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999888876 67777776789999999999654 445443
No 49
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.79 E-value=4.1e-19 Score=178.33 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=101.9
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc------ccccc-----ccccchhHHHhhhCCCCCC
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVPAE-----SASIPYFDAIMLHMKSYDS 558 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~------~Vpa~-----~a~i~~~d~I~~~ig~~d~ 558 (803)
+.++++++| |++++|+||||||||||+|+|+|+.... .|. .+... ...+....+++..++..+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 568999998 8999999999999999999999986321 221 11110 0122333335666676665
Q ss_pred ccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhh-hCcccc
Q 003687 559 PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 559 l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.......++.++++ ++.+.+.+.+|+++||||||+|+|+.....+. .+++.++++ +.++|++||+.+.. ..+++.
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVLHDLNLAARYADRV 168 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 55666778877765 56666778999999999999999999888876 666777655 89999999999875 455543
No 50
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.79 E-value=6.2e-19 Score=183.62 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=104.1
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hcc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICG 533 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~G 533 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ...
T Consensus 2 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 2 EVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred eeeeeEEEE----CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 345565444 24578999998 8999999999999999999999986110 112
Q ss_pred ccccccccccc---hhHH-------------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHH
Q 003687 534 LMVPAESASIP---YFDA-------------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~d~-------------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa 578 (803)
.++|+....++ ..+. ++..++..+........+|.++++ +..+.+
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 24444332111 1111 122223332233344566777665 566667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 639 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~ 639 (803)
.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+... .+++...+..
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELA-ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 78999999999999999999888876 666777667899999999998764 4544333333
No 51
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.7e-19 Score=180.88 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=101.7
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------hccccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPA 538 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------q~G~~Vpa 538 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ....++|+
T Consensus 2 ~~~~l~~~~----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 2 EVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred EEEEEEEEE----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 455665544 24578999988 8999999999999999999999986210 11224454
Q ss_pred cccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 003687 539 ESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 539 ~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~s 593 (803)
....++ ..+. ++..++...........+|.++++ +..+.+.+.+|+++||||||+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 432211 1111 222223322223334456666665 556677789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
|+|+.....+. .+++.+.+.+.++|++||+.++.. ++++
T Consensus 158 ~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 158 GLDPVNVELLK-DVIRELARAGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred CCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhhhE
Confidence 99999888886 666677666899999999998753 4443
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.2e-19 Score=183.63 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=120.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH------------------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS------------------------L 528 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~------------------------~ 528 (803)
.++++|+++.| .+++.+++||+| |++++|+||+|||||||||+|.|++ .
T Consensus 3 ~i~~~nl~k~y---p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 3 MIEVKNLSKTY---PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred eEEEeeeeeec---CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 47888998877 478899999999 8999999999999999999999986 1
Q ss_pred hhhccccccccccccc-----------------hhH---------------HHhhhCCCCCCccCCccchHHHHHH-HHH
Q 003687 529 LGICGLMVPAESASIP-----------------YFD---------------AIMLHMKSYDSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 529 laq~G~~Vpa~~a~i~-----------------~~d---------------~I~~~ig~~d~l~~~~stfs~em~~-l~~ 575 (803)
..++|+ +.+....++ .+. ..+.++|..+...+..+++|.+.++ .+.
T Consensus 80 r~~iGm-IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 80 RRDIGM-IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHhcee-EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 223333 233222211 111 1234455555555566777776554 666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeEEE
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~~ 645 (803)
+.+.+++|++||.|||+++|||.....++..+.+.-.+.|.|+|+..|+.+++ +++++...+..+.+.++
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 66778999999999999999999999998444444467799999999999998 46666666666666554
No 53
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=4.7e-19 Score=181.70 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=100.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------hh
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GI 531 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------aq 531 (803)
.+++++..| .+++.+++++|| |++++|+||||||||||+|+|+|+... .+
T Consensus 2 ~~~~l~~~~---~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 2 EFINVTKTY---PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred EEEEEEEEe---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 345555443 223578999998 899999999999999999999998511 01
Q ss_pred ccccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 532 CGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
...+++++...++ ..++ ++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTIL 158 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence 1234444432221 1111 222233332233334566766665 56667778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
||||||+|||+.....+. .+++.+.+.|.++|++||+.+...
T Consensus 159 llDEPt~~LD~~~~~~~~-~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 159 IADEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred EEeCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 999999999999888876 666667666899999999998764
No 54
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=5.7e-19 Score=180.91 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=102.0
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----------------------hhc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GIC 532 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------aq~ 532 (803)
.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... .+.
T Consensus 2 ~~~~l~~~~----~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 2 EIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred EEEEEEEEE----CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 355665544 23578999998 899999999999999999999998621 011
Q ss_pred cccccccccccc---hhHH----------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++|+....++ ..++ ++..++...........++.++++ +..+.+.+.+|+++
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 224444332211 1111 122233333333444567777665 56666778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
||||||+|||+.....+. .+++.+.+.|.++|++||+.+... +++
T Consensus 158 llDEP~~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 158 LFDEPTSALDPELVGEVL-DVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred EEeCCccCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999999998877775 777777667899999999998763 444
No 55
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.9e-19 Score=183.04 Aligned_cols=151 Identities=22% Similarity=0.271 Sum_probs=103.1
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------h
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------I 531 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----------------------q 531 (803)
.++|++..| +++.+++|+|| |++++|+||||||||||+|+|+|+.... +
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 2 ELRGLTKSF----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred eEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 355665544 24579999998 8999999999999999999999986110 1
Q ss_pred ccccccccccccc---hhHH----------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 532 CGLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
...++|+....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1224454432211 1111 122233333333344567777665 5666777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.+. ++++.
T Consensus 158 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 158 LLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred EEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCEE
Confidence 9999999999999888886 66666665 5899999999998654 45443
No 56
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.79 E-value=7.6e-19 Score=190.51 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=105.4
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhccccccccccccch---h
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---F 546 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G~~Vpa~~a~i~~---~ 546 (803)
++.+++++|| |++++|+||||||||||+|+|+|+... .....++|+....++. .
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4578999998 899999999999999999999998611 0112345554322211 1
Q ss_pred ---------------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 003687 547 ---------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 547 ---------------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~ 604 (803)
..++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+.
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 11233344443344455678888776 56677779999999999999999999888775
Q ss_pred HHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 605 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 605 ~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
.+++.+.+.|.|+|++||+++.+. ++++...+..+.+
T Consensus 165 -~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 165 -DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred -HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 777777767999999999998764 4554444444443
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.79 E-value=4.5e-19 Score=181.60 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=96.8
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcccccccccc-cc---ch
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 545 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G~~Vpa~~a-~i---~~ 545 (803)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+... .+ ..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 578999998 899999999999999999999998611 011234444421 11 11
Q ss_pred hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 003687 546 FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCI 603 (803)
Q Consensus 546 ~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L 603 (803)
.+ .++..++..+......+.+|.++++ +..+.+.+.+|+++||||||+|||+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 1223334433334455677777766 6667777899999999999999999988888
Q ss_pred HHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 604 AGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 604 ~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
. .++..+.+.|.++|++||+.+.+.
T Consensus 174 ~-~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 174 L-ELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred H-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 6 666666666899999999998764
No 58
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.79 E-value=7.7e-19 Score=193.81 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=113.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
|+++|+++.|....+...+++|+|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 5677887766221123579999999 899999999999999999999998611 1
Q ss_pred hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++|+....++ ..+ .++..++..+......+.+|.++++ +..+.+.+.+|++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 12234555432221 111 2233445544445556677877766 6667777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+|+||||++||+.....+. .+++.+.+ .|.|+|++||+++.+ .++++...+..+
T Consensus 162 LLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 162 LLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999988886 77777754 499999999999886 445544333333
No 59
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-18 Score=181.46 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=104.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------- 530 (803)
+.+++++..|........+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 6777887655211112579999998 8999999999999999999999985110
Q ss_pred -hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 531 -ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 531 -q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
+...++|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11234454432111 111 1222333333333344566777665 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~ 631 (803)
++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.....
T Consensus 166 lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 166 LVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred EEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 99999999999999888876 66677654 589999999999886543
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=7.8e-19 Score=183.66 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=102.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.+++++..| .+++.+++++|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 l~~~~l~~~~---~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeec---CCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 4566776554 124579999999 899999999999999999999998611 0
Q ss_pred hccccccccccccc---hhHHH-----------------------------hhhCCCCCCccCCccchHHHHHH-HHHHH
Q 003687 531 ICGLMVPAESASIP---YFDAI-----------------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~I-----------------------------~~~ig~~d~l~~~~stfs~em~~-l~~iL 577 (803)
+...++|+....++ ..+++ +..++..+........+|.++++ +..+.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 11234454432221 11111 12222222223334566766665 56667
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~ 633 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ .|+++|++||+.+.+ .++++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 778999999999999999999888876 66666654 589999999999876 34443
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-18 Score=182.29 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=102.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------h
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------I 531 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----------------------q 531 (803)
.++|++..| .+++.+++++|| |++++|+||||||||||+|+|+|+.... +
T Consensus 2 ~~~~l~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 2 EVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred EEeeEEEec---CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 355665544 122679999998 8999999999999999999999986110 1
Q ss_pred ccccccccccccc---hhHHH-----------------------------hhhCCCCCCccCCccchHHHHHH-HHHHHH
Q 003687 532 CGLMVPAESASIP---YFDAI-----------------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~I-----------------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa 578 (803)
...++|+....++ ..+++ +..++..+........+|.++++ +..+.+
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 1234444332211 11111 12222222223334566766665 566667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.+. ++++.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v 215 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVDLAREYADRI 215 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 78999999999999999999888886 66666654 5899999999998765 45443
No 62
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.78 E-value=7.9e-19 Score=175.17 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhc-----cccccc--------ccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GLMVPA--------ESA 541 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~-----G~~Vpa--------~~a 541 (803)
.++|++..|. .....++++++| |++++|+||||||||||+|+|+|+...... |..+.. ..+
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 2 EVENVSFRYP--GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred EEEEEEEEcC--CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 3455554441 112468899888 899999999999999999999998632111 111100 001
Q ss_pred ccchhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEE
Q 003687 542 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 620 (803)
Q Consensus 542 ~i~~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~ 620 (803)
++++...++. .++.+++ ++.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|+
T Consensus 80 ~~~q~~~~~~-~tv~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 151 (173)
T cd03246 80 YLPQDDELFS-GSIAENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIV 151 (173)
T ss_pred EECCCCcccc-CcHHHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 1122111221 1222222 5666554 66677779999999999999999999888886 666777667899999
Q ss_pred EccChhhhhCcc
Q 003687 621 STHLHGIFSLPL 632 (803)
Q Consensus 621 sTH~~eL~~~~~ 632 (803)
+||+.+....++
T Consensus 152 ~sh~~~~~~~~d 163 (173)
T cd03246 152 IAHRPETLASAD 163 (173)
T ss_pred EeCCHHHHHhCC
Confidence 999998765443
No 63
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.4e-19 Score=178.91 Aligned_cols=143 Identities=16% Similarity=0.235 Sum_probs=97.6
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc------ccc-------cccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVP-------AESA 541 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~------~Vp-------a~~a 541 (803)
.+++++..| ++..++++++| |++++|+||||||||||+|+|+|+.... .|. .+. ...+
T Consensus 2 ~~~~l~~~~----~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 2 EVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred EEEEEEEEE----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEE
Confidence 345555443 23468999998 8999999999999999999999986221 111 110 0112
Q ss_pred ccchhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEE
Q 003687 542 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 620 (803)
Q Consensus 542 ~i~~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~ 620 (803)
++++...++..++..+++. ++.++++ +..+.+.+.+|+++|+||||+|||+.....+. .+++.+.++|.++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii 150 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILL 150 (173)
T ss_pred EEecCCccccCCcHHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 2222222232233333332 5655554 66677779999999999999999999888886 677777666899999
Q ss_pred EccChhhhh-Ccc
Q 003687 621 STHLHGIFS-LPL 632 (803)
Q Consensus 621 sTH~~eL~~-~~~ 632 (803)
+||+.++.. .++
T Consensus 151 ~th~~~~~~~~~d 163 (173)
T cd03230 151 SSHILEEAERLCD 163 (173)
T ss_pred ECCCHHHHHHhCC
Confidence 999998765 444
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=9.4e-19 Score=196.68 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=112.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+... ++.
T Consensus 3 ~L~~~nls~~y----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 36777887655 35789999999 899999999999999999999998611 111
Q ss_pred ccccccccccc---chhH-------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASI---PYFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d-------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
..+++++.... ...+ ..+..++..+........+|.++++ +..+.+.+.+|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 23445443211 1111 1222333333333445567777665 55666778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
+++||||||+|||+.....+. .+++.+.+.|.|+|++||+++++ .++++...+..+.
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999888886 77777776789999999999987 4555544444443
No 65
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.78 E-value=1.4e-18 Score=181.46 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=103.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~ 534 (803)
+.++|+...| +++.+++++|| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAY----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 4556666544 24679999998 8999999999999999999999986110 1123
Q ss_pred cccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++|||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4444322111 111 1222333333333445567777665 66677779999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcc
Q 003687 590 EICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~~~~ 632 (803)
|||+|||+.....+. .++..+. +.|.++|++||+.+.+..++
T Consensus 158 EP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d 200 (236)
T TIGR03864 158 EPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEADD 200 (236)
T ss_pred CCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence 999999999888887 5666665 46899999999998876444
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.6e-18 Score=180.39 Aligned_cols=162 Identities=14% Similarity=0.183 Sum_probs=107.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.+++++..|....+...++++++| |++++|+||||||||||+|+|+|+... .
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 4566776554110001279999998 899999999999999999999998611 1
Q ss_pred hccccccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
....++|+....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11234454432221 1111 222233333333445567777655 6667777999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
+||||||+|||+.....+. .++..+.+ .|.++|++||+.+.+. ++++...+.++
T Consensus 162 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 217 (233)
T cd03258 162 LLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217 (233)
T ss_pred EEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999888886 66666655 4899999999998753 45544333333
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.78 E-value=9.7e-19 Score=180.04 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=102.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~ 534 (803)
+.++|++..|........++++++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 4556666554210001279999998 8999999999999999999999986210 1122
Q ss_pred cccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++|+....++ ..+. ++..++..+........+|.++++ +..+.+.+.+|+++|||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4444432211 1111 222223322223333455666555 56667778999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
|||+|||+.....+. .+++.+.+.|.++|++||+.+.+. ++++
T Consensus 162 EPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 162 EPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred CCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhcCE
Confidence 999999999888876 667777667899999999997653 4443
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=8.4e-19 Score=179.85 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=101.3
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMV 536 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~V 536 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ....++
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 2 ELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred EEEeeEEEE----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 455665444 23578999998 8999999999999999999999986210 011234
Q ss_pred ccccccc---chhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 003687 537 PAESASI---PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i---~~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP 591 (803)
|+....+ ...+ .++..++..+........+|.++++ +..+.+.+.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4432111 1111 1222333333333444566777665 5566677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003687 592 CRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~ 633 (803)
|+|||+.....+. .+++.+.+ .|.|+|++||+.+.+. ++++
T Consensus 158 t~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 158 LSNLDAKLRVQMR-AELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 9999999888886 66666654 5899999999998654 3443
No 69
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.78 E-value=1.5e-18 Score=179.99 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=103.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.+.+++++..|........+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 36777887655210001358999998 8999999999999999999999985110
Q ss_pred --hccccccccccccc---hhHHH---------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 531 --ICGLMVPAESASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 531 --q~G~~Vpa~~a~i~---~~d~I---------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
....++++....++ ..+++ +..++..+........+|.++++ +..+.+.+.+|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p 165 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11234444432211 11221 22223333333344566766655 56666778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~~~~ 632 (803)
+++||||||+|||+.....+. .+++.+. +.|.++|++||+.+....++
T Consensus 166 ~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d 214 (228)
T PRK10584 166 DVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAARCD 214 (228)
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 999999999999999888876 6666665 45899999999998765543
No 70
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.2e-19 Score=195.93 Aligned_cols=191 Identities=21% Similarity=0.222 Sum_probs=127.0
Q ss_pred eEEEecccccccccCCCce-eccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hccccc---cc-c--c
Q 003687 477 CLKMNGLSPYWFDAAEGSA-VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMV---PA-E--S 540 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~-VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G~~V---pa-~--~ 540 (803)
.++++|+++.| +.. +++++|+ |++++|+||||||||||||+|+|+.... ..|..| |. + .
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 47888998887 233 9999999 8999999999999999999999997322 122222 21 1 2
Q ss_pred cccchhHHHhhhCCCCCCccCC-------------------------------ccchHHHHH-HHHHHHHhCCCCcEEEE
Q 003687 541 ASIPYFDAIMLHMKSYDSPADG-------------------------------KSSFQVEMS-EIRSIVTATTSRSLVLI 588 (803)
Q Consensus 541 a~i~~~d~I~~~ig~~d~l~~~-------------------------------~stfs~em~-~l~~iLa~a~~psLlLL 588 (803)
+.++|...+|.+|++.+|+..+ .+.+|++.+ +++.+.+.+.+|+++||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 4455555566666666655443 234455444 46666677899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeEEEEeCCceeeeeEEeeCCCCCchH
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLA 667 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~~~~~~~l~~tYkL~~G~~~~S~a 667 (803)
|||.|+||..-+..+...+.+..++.|.|+|++|||...+ .++++...+..+.... -++....|.= .-.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q---~g~p~ely~~-------P~n 227 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ---VGTPLELYER-------PAN 227 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee---cCChHHHhhC-------ccc
Confidence 9999999999999987666664566799999999998665 4555443333232221 1222223321 112
Q ss_pred HHHHHHcCCCHHHHH
Q 003687 668 FETAKREGVPETIIQ 682 (803)
Q Consensus 668 l~iA~~~Glp~~Ii~ 682 (803)
..+|...|.|.--+-
T Consensus 228 ~fVA~FiG~p~mn~~ 242 (338)
T COG3839 228 LFVAGFIGSPPMNFL 242 (338)
T ss_pred hhhhhhcCChhhcCc
Confidence 347888887765443
No 71
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.7e-19 Score=178.29 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=96.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc------ccc----------c
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVP----------A 538 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~------~Vp----------a 538 (803)
.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... .|. .+. .
T Consensus 2 ~~~~l~~~~----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~ 76 (178)
T cd03229 2 ELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRR 76 (178)
T ss_pred EEEEEEEEE----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccchhHHHHhh
Confidence 345555443 23578999988 8999999999999999999999986321 121 110 0
Q ss_pred cccccchhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CC
Q 003687 539 ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GC 616 (803)
Q Consensus 539 ~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~ 616 (803)
..+++++...++...+..+++... +|.++++ +..+.+.+.+|+++|||||++|+|+.....+. .+++.+.+. +.
T Consensus 77 ~i~~~~q~~~~~~~~t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~ 152 (178)
T cd03229 77 RIGMVFQDFALFPHLTVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGI 152 (178)
T ss_pred cEEEEecCCccCCCCCHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCC
Confidence 011222222222222333332221 6666655 66677779999999999999999999888776 677777665 79
Q ss_pred EEEEEccChhhhh
Q 003687 617 LGIVSTHLHGIFS 629 (803)
Q Consensus 617 tvI~sTH~~eL~~ 629 (803)
++|++||+.++..
T Consensus 153 tiii~sH~~~~~~ 165 (178)
T cd03229 153 TVVLVTHDLDEAA 165 (178)
T ss_pred EEEEEeCCHHHHH
Confidence 9999999998765
No 72
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=9.3e-19 Score=180.42 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=101.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLM 535 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~ 535 (803)
.+++++..|. .+.+.+++++|| |++++|+||||||||||+|+|+|+.... ....+
T Consensus 2 ~~~~l~~~~~--~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 2 QIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEEeeEEEeC--CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4556655441 112679999998 8999999999999999999999986210 11224
Q ss_pred ccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+++....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 444322111 111 1222233332223334556666655 666777799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
||+|+|+.....+. .+++.+.+ +.++|++||+++.+. .+++.
T Consensus 160 P~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i 202 (220)
T cd03263 160 PTSGLDPASRRAIW-DLILEVRK-GRSIILTTHSMDEAEALCDRI 202 (220)
T ss_pred CCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEcCCHHHHHHhcCEE
Confidence 99999999888876 66766665 589999999998764 45443
No 73
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.5e-19 Score=180.75 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=103.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-hhcccccc----------cccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVP----------AESA 541 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-aq~G~~Vp----------a~~a 541 (803)
.+.+++++..|.....++.+++++|| |++++|+||||||||||+|+|+|+... ...|...- ...+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 36677777665211113579999998 899999999999999999999997421 12221110 0112
Q ss_pred ccchhHHHhhhCCCCCCccCCc--cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEE
Q 003687 542 SIPYFDAIMLHMKSYDSPADGK--SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 618 (803)
Q Consensus 542 ~i~~~d~I~~~ig~~d~l~~~~--stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tv 618 (803)
++++...++..++..+++.... ..++.++++ +..+.+.+.+|+++|+|||++|+|+.....+. .+++.+.+.|.++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ti 161 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAI 161 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEE
Confidence 2222222333333333332211 156666655 55666778999999999999999999888876 6777777678999
Q ss_pred EEEccChhh--hhCccc
Q 003687 619 IVSTHLHGI--FSLPLK 633 (803)
Q Consensus 619 I~sTH~~eL--~~~~~~ 633 (803)
|++||+.+. ...+++
T Consensus 162 iivtH~~~~~~~~~~d~ 178 (192)
T cd03232 162 LCTIHQPSASIFEKFDR 178 (192)
T ss_pred EEEEcCChHHHHhhCCE
Confidence 999999873 455543
No 74
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=1.2e-18 Score=188.99 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=112.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G~ 534 (803)
+.++++++.| +++.+++|+|| |++++|+||||||||||||+|+|+... .+...
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEE----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 5677887665 35679999999 899999999999999999999998611 11223
Q ss_pred cccccccccch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIPY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++|+.....+. .+ .++..++..+......+.+|.++++ +..+.+.+.+|+++|||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 45554322211 11 1222334433334445667777766 56677779999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~ 643 (803)
|||+|||+.....+. .+++.+++ +.|+|++||+++.+ +++++...+..+.+.
T Consensus 159 EPt~gLD~~~~~~l~-~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 159 EPTTGLDPNQLVEIR-NVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred CCcccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999887775 67777765 79999999999865 456655444455444
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=1.3e-18 Score=179.48 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=100.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------hhcc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICG 533 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------------aq~G 533 (803)
.++|+...| +++.++++++| |++++|+||||||||||+|+|+|+... .+..
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 2 EVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred EEeeEEeec----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 455665544 24578999998 899999999999999999999998611 0112
Q ss_pred ccccccccccch---hHHH-------------------hhhC-CCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 534 LMVPAESASIPY---FDAI-------------------MLHM-KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 534 ~~Vpa~~a~i~~---~d~I-------------------~~~i-g~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
.++|+....++. .+++ +..+ +..+........++.++++ +..+.+.+.+|+++|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 244444322211 1111 1111 1111122233456666655 55566678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
|||+|||+.....+. .+++.+.+.|.|+|++||+.+.. ..+++.
T Consensus 158 EPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 158 EPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccEE
Confidence 999999999888886 66667766789999999999865 445443
No 76
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=182.89 Aligned_cols=152 Identities=14% Similarity=0.215 Sum_probs=103.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~ 532 (803)
.+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 36778887655 34679999998 8999999999999999999999986110 11
Q ss_pred -cccccccccccc---hhHHH------------------------------------hhhCCCCCCccCCccchHHHHHH
Q 003687 533 -GLMVPAESASIP---YFDAI------------------------------------MLHMKSYDSPADGKSSFQVEMSE 572 (803)
Q Consensus 533 -G~~Vpa~~a~i~---~~d~I------------------------------------~~~ig~~d~l~~~~stfs~em~~ 572 (803)
..++|+....++ ..+++ +..++..+........+|.++++
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 123444332211 11111 11222222223334456666655
Q ss_pred -HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhh-hCccc
Q 003687 573 -IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 573 -l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~-~~~~~ 633 (803)
+..+.+.+.+|+++||||||+|||+.....+. .++..++++ |.++|++||+.+.+ ..+++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELD-ELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 56667778999999999999999999888886 667677654 89999999999876 34443
No 77
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.78 E-value=1.1e-18 Score=193.36 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=113.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------------------hhccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGL 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------aq~G~ 534 (803)
.+.++|+++.| ++..++++++| |++++|+||||||||||||+|+|+... .+...
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36778887766 34678999988 899999999999999999999999621 11123
Q ss_pred cccccccccch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIPY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++++..+.+|. .+ .++..++..+........+|.++++ ++.+.+.+.+|+++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 45555443332 11 1233334444344455667777665 66677779999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~ 643 (803)
||+++||+..+..+...+.+...+.|.|+|++||+.+.+ .++++...+..+.+.
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999887444444455699999999999875 556655444555443
No 78
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.8e-18 Score=180.85 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=102.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hcccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~ 535 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +...+
T Consensus 3 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEeEEEEE----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 5667776655 24679999998 8999999999999999999999986210 01224
Q ss_pred ccccccccc---hhHH-------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 536 VPAESASIP---YFDA-------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 536 Vpa~~a~i~---~~d~-------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
+++....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 444322111 1111 122222222222334556666665 56666778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
||||||+|||+.....+. .+++.+.+ .|.|+|++||+.+.. ..+++.
T Consensus 159 llDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 207 (239)
T cd03296 159 LLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRV 207 (239)
T ss_pred EEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999888876 67777655 489999999999864 344433
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.77 E-value=2.5e-18 Score=180.69 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=107.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------- 530 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred EEEeceEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5677776555 24579999998 8999999999999999999999985110
Q ss_pred -----hccccccccccccc---hhHH----------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHh
Q 003687 531 -----ICGLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTA 579 (803)
Q Consensus 531 -----q~G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~ 579 (803)
....++|+....++ ..++ ++..++..+........+|.++++ +..+.+.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHH
Confidence 01224444332221 1111 122223332233344566776665 6667777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+... ++++...+.++
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVL-NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 8999999999999999999888876 677777767899999999998763 45443333333
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=2.1e-18 Score=180.45 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=105.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----------------------hh
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GI 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------aq 531 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... .+
T Consensus 2 l~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEE----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 4566666544 24578999998 899999999999999999999998611 00
Q ss_pred ccccccccccccc---hhHH----------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 532 CGLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
...++|+....++ ..+. ++..++..+........++.++++ +..+.+.+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 1233444322111 1111 222233332233344566766665 5566677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 639 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~ 639 (803)
+||||||+|+|+.....+. .+++.+.+.|.++|++||+.++.. .+++...+.+
T Consensus 158 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 211 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211 (240)
T ss_pred EEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999888886 677777767899999999998764 4444333333
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=192.87 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=110.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hcccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~ 535 (803)
+.++++++.| .+++.++++++| |++++|+||||||||||||+|+|+.... ....+
T Consensus 4 l~i~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEeEEEEe---CCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 6677887655 134679999998 8999999999999999999999986211 11224
Q ss_pred ccccccccch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIPY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+++..+.++. .+ .++..++..+........+|.++++ ++.+.+.+.+|+++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4554333321 11 1222334433334444566776655 666777799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccccccccccee
Q 003687 591 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
|+++||+..+..+. ..++.+. +.|.|+|++||+.+.+ .++++...+..+.+
T Consensus 161 P~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 161 PLSNLDAKLRVQMR-LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999988887 4455554 4599999999998765 45665444444444
No 82
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.6e-18 Score=171.61 Aligned_cols=124 Identities=36% Similarity=0.477 Sum_probs=101.2
Q ss_pred eeccccCCC--ceEEEEecCCCChhHHHHHHHhhHhhhh----------ccccccccccccchhHHHhhhCCCCCCccCC
Q 003687 495 AVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGI----------CGLMVPAESASIPYFDAIMLHMKSYDSPADG 562 (803)
Q Consensus 495 ~VlndIsLG--eii~ItGPNGsGKSTLLR~Iagl~~laq----------~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~ 562 (803)
.+++++.+. .+++|||||||||||++|+++.+..+++ .|+++|+....+ ++..++
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~~~~-------- 77 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ-------- 77 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehheee--------
Confidence 577888884 4999999999999999999999998888 888888776544 333332
Q ss_pred ccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 563 KSSFQVEMSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 563 ~stfs~em~~l~~iLa~a~--~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
.|..+.++..++.++.... +|+++|+|||++|||+.++..+...+.+.+.+ ++++|++||+.++...++
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELAD 148 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhh
Confidence 4555666666777777654 99999999999999999999999888877766 899999999999987654
No 83
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=1.2e-18 Score=178.78 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=97.5
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------hhccccccccccc-----cchhHH
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESAS-----IPYFDA 548 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------aq~G~~Vpa~~a~-----i~~~d~ 548 (803)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...++|+.... ....++
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 3568999998 899999999999999999999998621 1112345554321 111111
Q ss_pred -------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 003687 549 -------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 549 -------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~ 602 (803)
++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 222223332233344567777665 555667789999999999999999998888
Q ss_pred HHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 603 IAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 603 L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
+. .++..+.+.|.++|++||+.+... .+++
T Consensus 171 l~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 171 IY-ELLRELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 86 666666657899999999998763 4443
No 84
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=1.5e-18 Score=171.82 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=95.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc-cccccc-cccchhHHHhhh
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAES-ASIPYFDAIMLH 552 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~-~Vpa~~-a~i~~~d~I~~~ 552 (803)
.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... .|. .+.... ...+..+.....
T Consensus 2 ~~~~l~~~~----~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 2 ELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred EEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcC
Confidence 455665554 24579999998 8999999999999999999999986322 121 111100 001110101111
Q ss_pred CCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hC
Q 003687 553 MKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SL 630 (803)
Q Consensus 553 ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~ 630 (803)
++. ...++.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+.+.+.++|++||+.+.. ..
T Consensus 77 i~~-------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 77 IAM-------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred eEE-------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 111 1126666655 66677779999999999999999999888886 67777766689999999999854 34
Q ss_pred ccc
Q 003687 631 PLK 633 (803)
Q Consensus 631 ~~~ 633 (803)
+++
T Consensus 149 ~d~ 151 (163)
T cd03216 149 ADR 151 (163)
T ss_pred CCE
Confidence 443
No 85
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=2.3e-18 Score=178.07 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=102.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.++|++..| .+++.+++++|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAY---LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEe---cCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 4566666544 124578999998 899999999999999999999998611 0
Q ss_pred hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 11224444432111 111 1222333333333444567777665 5566677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+||||||+|||+.....+. .+++.+.+.+.++|++||+.++..
T Consensus 159 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 159 LLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred EEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999999999999888886 666667666899999999998764
No 86
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=193.67 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=110.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hcccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~ 535 (803)
+.++++++.| +++.+++++|| |++++|+||||||||||||+|+|+.... ....+
T Consensus 4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 6778887665 34678999998 8999999999999999999999986210 11234
Q ss_pred ccccccccch---hHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~~---~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+++....++. .++ ++..++..+........+|.++++ ++.+.+.+.+|+++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5554332221 111 223334433334445667777665 666777789999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccccccccccee
Q 003687 591 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||+|||+.....+. .+++.+. +.|.|+|++||+.+.+ .++++...+..+.+
T Consensus 160 Pts~LD~~~~~~l~-~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 160 PLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999888886 5556654 4589999999999865 45554444444433
No 87
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=1.4e-18 Score=177.07 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=95.9
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccc
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP 544 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~ 544 (803)
++.+++++|| |++++|+||||||||||+|+|+|+.... +...++++....++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4578999998 8999999999999999999999986210 01122333321111
Q ss_pred ---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 545 ---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 545 ---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 111 1222333333333344566666655 666677789999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 600 g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
...+. .+++.+.+.|.++|++||+.++...+
T Consensus 170 ~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 170 RDEVL-DLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 88886 66677766689999999999876543
No 88
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.77 E-value=1.1e-18 Score=178.07 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH-hhhhccc------cccc---------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGICGL------MVPA--------- 538 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~-~laq~G~------~Vpa--------- 538 (803)
.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+. .....|. .+..
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 2 EIKDLHVSV----GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred eEEEEEEEe----CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 345665444 24579999998 8999999999999999999999984 1111221 1100
Q ss_pred cccccchhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCE
Q 003687 539 ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 617 (803)
Q Consensus 539 ~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~t 617 (803)
..+++++...++..+...+.+......++.++++ +..+.+.+.+|+++||||||+|||+.....+. .++..+.+.+.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~t 156 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKS 156 (200)
T ss_pred cEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCE
Confidence 0112222222333333333332222467776665 66667778999999999999999999888886 666667666899
Q ss_pred EEEEccChhhhh--Cccccccc
Q 003687 618 GIVSTHLHGIFS--LPLKIKNA 637 (803)
Q Consensus 618 vI~sTH~~eL~~--~~~~~~~v 637 (803)
+|++||+++... .+++...+
T Consensus 157 iii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 157 VLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred EEEEecCHHHHHHhhCCEEEEE
Confidence 999999999876 45544333
No 89
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.7e-18 Score=185.27 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=111.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..| .+++.+++|+|| |++++|+||||||||||+|+|+|+... .+.
T Consensus 4 ~l~~~~l~~~~---~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRY---KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEe---CCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence 46777887654 224579999999 899999999999999999999998611 011
Q ss_pred ccccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++++... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 234444321 11 11111 122223333333444567777665 55667778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||||||+|||+.....+. .+++.+.+.|.|+|++||+++.+ .++++...+.++.+
T Consensus 161 llDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216 (274)
T ss_pred EEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999988886 67777766699999999999976 55665444444443
No 90
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=189.97 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=110.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.++|+++.|....+++.+++|+|| |++++|+||||||||||+|+|+|+... .
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 4567777655211124579999999 899999999999999999999998611 1
Q ss_pred hccccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 531 ICGLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+...++|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 12234555432221 111 1223334444344455677777766 5666677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccce
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~~ 641 (803)
+||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.+. ++++...+..+.
T Consensus 162 LlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~ 218 (343)
T PRK11153 162 LLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999888886 66666654 5899999999998764 455443333433
No 91
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.77 E-value=1.5e-18 Score=175.34 Aligned_cols=134 Identities=17% Similarity=0.175 Sum_probs=94.3
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------hcccccccccc--cc-
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESA--SI- 543 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------q~G~~Vpa~~a--~i- 543 (803)
++.+++++|| |++++|+||||||||||+|+|+|+.... +...++++... .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 4578899988 8999999999999999999999986110 01124444321 11
Q ss_pred -chhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 544 -PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 544 -~~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
...+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1111 1222233333333444567776665 5666677899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 601 TCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 601 ~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
..+. .+++.+++.|.++|++||+.++
T Consensus 164 ~~~~-~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQML-AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeecccc
Confidence 8886 6667777678999999999875
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=179.67 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=103.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... +.
T Consensus 4 l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 4 LTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred EEEeCcEEEe----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5667777655 24679999999 8999999999999999999999985210 11
Q ss_pred ccccccccccc---chhHHH----------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESASI---PYFDAI----------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~I----------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++|+....+ ...+++ +..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22444443211 111221 11122222122233456666655 56666778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
||||||+|||+.....+. .+++.+.+.|.++|++||+.+.. ..+++.
T Consensus 160 llDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCERA 207 (241)
T ss_pred EEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCEE
Confidence 999999999999888775 67777777799999999998654 445443
No 93
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.8e-18 Score=191.59 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=113.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGL 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~ 534 (803)
.+.++++++.| ++..+++++|| |++++|+||||||||||||+|+|+.... ....
T Consensus 6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47788888776 34678999998 8999999999999999999999996211 1122
Q ss_pred cccccccccch---hHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
+++++.+.++. .++ ++..++..+........+|.++++ ++.+.+.+.+|+++|||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45554433332 111 222233333333344566666655 66677778999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003687 590 EICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~ 643 (803)
||+++||+.....+. ..++.+ .+.|.|+|++||+.+.+ .++++...+..+.+.
T Consensus 162 EP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 162 EPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999887 555555 45589999999999876 566665555555443
No 94
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-18 Score=184.07 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=105.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------I 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------q 531 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+.... .
T Consensus 2 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRY----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEc----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 4566776554 24579999998 8999999999999999999999986110 1
Q ss_pred ccccccccccc-cc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 532 CGLMVPAESAS-IP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a~-i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
...++|+.... +. ..++ ++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 12344443210 00 1111 111222222223334566777665 5566677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+||||||+|||+.....+. .+++.+.+.|.++|++||+.+.+ .++++...+..+
T Consensus 158 llLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999888886 67777766689999999999876 445544333333
No 95
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-18 Score=184.37 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=106.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
+.++|+...| .+++.+++|+|| |++++|+||||||||||||+|+|+.... ..
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSY---PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEc---CCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 4566666554 224569999999 8999999999999999999999985210 11
Q ss_pred ccccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++|+... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 123443321 01 11111 122233333333344567777766 55566778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
||||||+|||+.....+. .+++.+++.|.|+|++||+.+....+++...+..+
T Consensus 159 lLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVL-ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 999999999999888776 66777776799999999999987655444333333
No 96
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=2.4e-18 Score=176.01 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=102.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~ 534 (803)
+++++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACER----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEE----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 4556666554 24578999998 8999999999999999999999985210 0111
Q ss_pred cccccccccc---hhH------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCC
Q 003687 535 MVPAESASIP---YFD------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 592 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~ 592 (803)
++++.....+ ..+ .++..++..+......+.+|.++++ +..+.+.+.+|+++|+||||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2333221111 111 1223333333333344566776655 56667779999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 593 sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+|||+.....+. .+++.+.+.+.++|++||+.++...
T Consensus 158 ~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 158 TAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred ccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhcc
Confidence 999999888886 7777776678999999999988754
No 97
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=1.8e-18 Score=179.57 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=100.5
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------hhcc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICG 533 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------------aq~G 533 (803)
.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+... .+..
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 2 EVSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred EEEeEEEEe----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 455665544 24578999998 899999999999999999999998621 1112
Q ss_pred ccccccccccch---hHHHh------------------hhCC-CCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 534 LMVPAESASIPY---FDAIM------------------LHMK-SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 534 ~~Vpa~~a~i~~---~d~I~------------------~~ig-~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
.++|++...++. .+.+. ..++ ..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 345554332221 11111 1111 111122233445666555 555667789999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 591 ICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
||+|||+.....+. .++..+.+ .|.|+|++||+.+.+. ++++.
T Consensus 158 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 202 (230)
T TIGR03410 158 PTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRY 202 (230)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE
Confidence 99999999888886 66666665 4899999999998765 45443
No 98
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.77 E-value=3.7e-18 Score=178.34 Aligned_cols=147 Identities=19% Similarity=0.225 Sum_probs=100.1
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH-hhh---------------------hc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLG---------------------IC 532 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~-~la---------------------q~ 532 (803)
.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+. ... ..
T Consensus 2 ~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 2 KIKDLHVSV----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred eEeeEEEEE----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 455665554 24678999998 8999999999999999999999983 000 11
Q ss_pred -cccccccccccch---h----------------------------HHHhhhCCCCCC-ccCCcc-chHHHHHH-HHHHH
Q 003687 533 -GLMVPAESASIPY---F----------------------------DAIMLHMKSYDS-PADGKS-SFQVEMSE-IRSIV 577 (803)
Q Consensus 533 -G~~Vpa~~a~i~~---~----------------------------d~I~~~ig~~d~-l~~~~s-tfs~em~~-l~~iL 577 (803)
..++++....++. . ..++..++..+. ...... .+|.++++ +..+.
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 1234444322110 0 011122233211 222233 37777665 66677
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+.+....
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHh
Confidence 778999999999999999999888886 6777777678999999999988754
No 99
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.77 E-value=9.5e-19 Score=173.81 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=95.3
Q ss_pred EecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh---------ccccccccccccchh
Q 003687 480 MNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESASIPYF 546 (803)
Q Consensus 480 l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq---------~G~~Vpa~~a~i~~~ 546 (803)
+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+..... ...+++++..
T Consensus 3 ~~~~~~~~---~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~----- 74 (166)
T cd03223 3 LENLSLAT---PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY----- 74 (166)
T ss_pred EEEEEEEc---CCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc-----
Confidence 45554443 223578999998 89999999999999999999999863211 1123444321
Q ss_pred HHHhhhCCCCCCccC-CccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccC
Q 003687 547 DAIMLHMKSYDSPAD-GKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 547 d~I~~~ig~~d~l~~-~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~ 624 (803)
++ ..+..+++.. ....++.++++ +..+.+.+.+|+++|||||++|+|+.....+. .+++.+ +.++|++||+
T Consensus 75 --~~-~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 75 --LP-LGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISVGHR 147 (166)
T ss_pred --cc-cccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEEeCC
Confidence 11 2233333332 34567776655 56666778999999999999999999877776 444443 6899999999
Q ss_pred hhhhhCcc
Q 003687 625 HGIFSLPL 632 (803)
Q Consensus 625 ~eL~~~~~ 632 (803)
.++...++
T Consensus 148 ~~~~~~~d 155 (166)
T cd03223 148 PSLWKFHD 155 (166)
T ss_pred hhHHhhCC
Confidence 87655443
No 100
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=2.1e-18 Score=191.65 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=112.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh--------------------c
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------C 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq--------------------~ 532 (803)
.++++++++.| ++..++++++| |++++|+||||||||||||+|+|+..... .
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 47888988776 24579999998 89999999999999999999999863321 0
Q ss_pred cccccccccccch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 533 GLMVPAESASIPY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 533 G~~Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
..++++..+.++. .+ .++..++..+........+|.++++ ++.+.+.+.+|+++|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1233443332221 11 1223334443344445566776665 666777799999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhc--CCEEEEEccChhhh-hCccccccccccee
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~~--g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||||++|||+..+..+. ..++.+.+. |.|+|++||+.+++ .++++...+..+.+
T Consensus 161 LDEP~s~LD~~~r~~l~-~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i 217 (362)
T TIGR03258 161 LDEPLSALDANIRANMR-EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL 217 (362)
T ss_pred EcCccccCCHHHHHHHH-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999988886 556666554 89999999999875 45665544444444
No 101
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=2.4e-18 Score=190.76 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=109.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hcccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~ 535 (803)
+.++++++.| ++..+++++|| |++++|+||||||||||||+|+|+.... ....+
T Consensus 3 L~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEe----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 5677887665 34579999998 8999999999999999999999986110 11224
Q ss_pred ccccccccch---hHH-------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 536 VPAESASIPY---FDA-------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 536 Vpa~~a~i~~---~d~-------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
+++..+.++. .++ ++..++..+........+|.++++ ++.+.+.+.+|+++
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4544333221 111 222233333333344566777665 56667778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
|||||++|||+.....+. .+++.+.+ .|.|+|++||+.+.+ .++++...+..+.+
T Consensus 159 LLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 159 LLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred EEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999988887 55556654 489999999999875 45555444444444
No 102
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.76 E-value=2.8e-18 Score=175.19 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=99.3
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLM 535 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~ 535 (803)
.+++++..| +++.++++++| |++++|+|+||+|||||+|+|+|+.... +...+
T Consensus 2 ~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 2 EADELTCER----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred EEEEEEEEe----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 456665544 34578999998 8999999999999999999999986110 11123
Q ss_pred cccccccc---chhH---------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCC
Q 003687 536 VPAESASI---PYFD---------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 536 Vpa~~a~i---~~~d---------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD 596 (803)
+++..... ...+ .++..++..+........++.++++ +..+.+.+.+|+++||||||+|||
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 33332111 1111 2223334433333344567776665 666777789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003687 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 597 ~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~ 628 (803)
+.....+. .++..+.+.|.++|++||+....
T Consensus 158 ~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~ 188 (201)
T cd03231 158 KAGVARFA-EAMAGHCARGGMVVLTTHQDLGL 188 (201)
T ss_pred HHHHHHHH-HHHHHHHhCCCEEEEEecCchhh
Confidence 99888886 66666666789999999986543
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=4.6e-18 Score=177.89 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=102.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
+.++|++..| +++.++++++| |++++|+||||+|||||||+|+|+.... ..
T Consensus 3 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 5667776655 24579999998 8999999999999999999999985110 01
Q ss_pred cccccccccccc---hhH-----------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHh
Q 003687 533 GLMVPAESASIP---YFD-----------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTA 579 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d-----------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~ 579 (803)
-.++++....++ ..+ .++..++..+........+|.++++ +..+.+.
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 123343322111 111 1222233333333344556666655 5666777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+++. ++++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i 212 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAG-KHSVVVVEHDMEFVRSIADKV 212 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhc-CCEEEEEECCHHHHHHhCCEE
Confidence 8999999999999999999888886 66666665 689999999998764 45443
No 104
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.5e-18 Score=182.15 Aligned_cols=152 Identities=15% Similarity=0.193 Sum_probs=103.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------hccccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPA 538 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------q~G~~Vpa 538 (803)
+.++|++..| +++.+++|+|| |++++|+||||||||||||+|+|+.... ....++++
T Consensus 2 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADY----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEe----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 4566776554 23578999998 8999999999999999999999986210 01123444
Q ss_pred cccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 003687 539 ESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 539 ~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~s 593 (803)
....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 322111 111 1222333333333344567777665 566677789999999999999
Q ss_pred CCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Ccccc
Q 003687 594 GTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
|||+.....+. .+++.+ .+.|+++|++||+.+.+. .+++.
T Consensus 158 ~LD~~~~~~l~-~~L~~~~~~~g~tviivsH~~~~~~~~~d~i 199 (255)
T PRK11248 158 ALDAFTREQMQ-TLLLKLWQETGKQVLLITHDIEEAVFMATEL 199 (255)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999888886 666666 445899999999998753 44443
No 105
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.76 E-value=4.1e-18 Score=176.58 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=103.9
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH-----hhhh------------------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----LLGI------------------ 531 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~-----~laq------------------ 531 (803)
.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+. ....
T Consensus 2 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 2 ELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred EEEEEEEEc----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 455665444 24578999998 8999999999999999999999986 2110
Q ss_pred ----cccccccccccc--chhHH----------------------HhhhCCCCCCccCC--ccchHHHHHH-HHHHHHhC
Q 003687 532 ----CGLMVPAESASI--PYFDA----------------------IMLHMKSYDSPADG--KSSFQVEMSE-IRSIVTAT 580 (803)
Q Consensus 532 ----~G~~Vpa~~a~i--~~~d~----------------------I~~~ig~~d~l~~~--~stfs~em~~-l~~iLa~a 580 (803)
...++|+....+ ...++ ++..++..+..... ...+|.++++ +..+.+.+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 112344432111 11111 12223333222233 2667777766 55566778
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~ 641 (803)
.+|+++||||||+|||+.....+. .+++.+.+. .++|++||+.+.+. ++++...+..+.
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIE-ELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGR 217 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999888886 666677665 89999999998753 455443333443
No 106
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.76 E-value=3.2e-18 Score=177.13 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=105.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------hccccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPA 538 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------q~G~~Vpa 538 (803)
.++++.+.| +++.++++++| |++++|+||||+|||||+++|+|+.... +...++|+
T Consensus 2 ~l~~v~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 2 ETKNLSKRF----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred EEEeEEEEE----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 355665543 24578999998 8999999999999999999999986211 01123444
Q ss_pred ccccc---chhHH-----------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 539 ESASI---PYFDA-----------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 539 ~~a~i---~~~d~-----------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
....+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++||||||+|+|+
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 32211 11111 222233333233334456666555 5666777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
.....+. .++..+.+.|.++|++||+.+.. ..+++...+..+.
T Consensus 158 ~~~~~l~-~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 201 (223)
T TIGR03740 158 IGIQELR-ELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201 (223)
T ss_pred HHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCE
Confidence 9888886 66767766789999999999876 4555443333333
No 107
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=4.1e-18 Score=173.72 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=102.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~ 534 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 l~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDY----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEe----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE
Confidence 4566776554 24579999999 8999999999999999999999986110 0112
Q ss_pred ccccccccc---chhHH----------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 003687 535 MVPAESASI---PYFDA----------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 535 ~Vpa~~a~i---~~~d~----------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sG 594 (803)
++|+..... ...+. ++..++..+........++.++++ +..+.+.+.+|+++|+||||+|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 333322111 11111 222223322223333456665554 6667777999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
+|+.....+. .+++.+++.|.++|++||+.+....++
T Consensus 158 LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 158 LDELSLLTII-TKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred cCHHHHHHHH-HHHHHHHHcCCEEEEEeCCchhccccc
Confidence 9999888886 666666667899999999998876543
No 108
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.7e-18 Score=171.04 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=88.6
Q ss_pred eeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc-cccc-------------cccccchhHHHhhhCCCC
Q 003687 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPA-------------ESASIPYFDAIMLHMKSY 556 (803)
Q Consensus 495 ~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~-~Vpa-------------~~a~i~~~d~I~~~ig~~ 556 (803)
.++++++| |++++|+||||||||||+|+|+|+.... .|. ++.. ..+++++...++. .+..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 68899988 8999999999999999999999986321 121 1100 0011222212221 2223
Q ss_pred CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 557 DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 557 d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
+++ ++.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+....+
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~ 161 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVIAHRLSTIRDA 161 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEEecCHHHHHhC
Confidence 332 5656555 55666778999999999999999999888876 66666654 79999999999887543
No 109
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.6e-18 Score=183.24 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=111.1
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----------------------h
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------a 530 (803)
+.+++++..|.... .++.+++|+|| |++++|+||||||||||+|+|+|+... .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 45667766552111 12479999998 899999999999999999999998611 0
Q ss_pred hccccccccc--ccc--chhH---------------------HHhhhCCCC--CCccCCccchHHHHHH-HHHHHHhCCC
Q 003687 531 ICGLMVPAES--ASI--PYFD---------------------AIMLHMKSY--DSPADGKSSFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~--a~i--~~~d---------------------~I~~~ig~~--d~l~~~~stfs~em~~-l~~iLa~a~~ 582 (803)
....++|+.. ..+ ...+ .++..++.. +........+|.++++ +..+.+.+.+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~ 162 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME 162 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence 1123555542 111 1111 223334443 2234445677877766 5566677899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.+ .++++...+..+.+
T Consensus 163 P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 163 PKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999888886 77777755 489999999999876 45655444444433
No 110
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=3.9e-18 Score=174.92 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=101.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------hccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMV 536 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----------------q~G~~V 536 (803)
++++++++.| +++.++++++| |++++|+||||||||||+++|+|+.... ....++
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVR----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEeEEEEE----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 5667776554 24578999998 8999999999999999999999985211 011233
Q ss_pred ccccccc---chhHH-----------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 003687 537 PAESASI---PYFDA-----------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 537 pa~~a~i---~~~d~-----------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGL 595 (803)
++..... ...++ ++..++..+........++.++++ +..+.+.+.+|+++||||||+|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 3222111 11111 222223322223334566766655 66677778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
|+.....+. .+++.+.+.|.++|++||+.+....
T Consensus 159 D~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 159 DAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc
Confidence 999888886 6666666679999999999987654
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5e-18 Score=177.78 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=106.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------- 530 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEeeEEEE----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4566776554 24579999998 8999999999999999999999986210
Q ss_pred ---hccccccccccccc---hhHHH----------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 ---ICGLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 ---q~G~~Vpa~~a~i~---~~d~I----------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
+...++|+....++ ..+++ +..++..+........++.++++ +..+.+.+.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 01123444322111 11111 12223332233334556666665 566667789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+.+.. .++++...+..+.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIV-SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH 218 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 99999999999999999877776 67777776789999999999876 3455443333333
No 112
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.76 E-value=3e-18 Score=191.22 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=112.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGL 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~ 534 (803)
.+.++|+++.| ++..++++++| |++++|+||||||||||||+|+|+.... ....
T Consensus 14 ~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 14 LVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred eEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47888888766 34578999988 8999999999999999999999986211 1122
Q ss_pred cccccccccch---hHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++++..+.++. .++ ++..++..+........+|.++++ ++.+.+.+.+|+++|||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD 169 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44444433322 111 222233333333444566666655 66667778999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCcccccccccceeE
Q 003687 590 EICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~ 643 (803)
||+++||+..+..+. ..++.+ .+.|.++|++||+.+++ .++++...+.++.+.
T Consensus 170 EP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 170 ESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999888886 555555 45699999999999875 466655555555443
No 113
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.8e-18 Score=180.27 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=102.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.++|+...| +++.+++++|| |++++|+||||||||||+|+|+|+... .+..
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 3 LRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEeEEEEE----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 5667776554 24679999998 899999999999999999999998511 0112
Q ss_pred cccccccccc---chhHHH-------------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 534 LMVPAESASI---PYFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I-------------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.++|++.... ...+.+ +..++..+........+|.++++ +..+.+.+.+|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3445443211 111111 11122222222334456666655 666777799999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
++||||||+|+|+.....+. .+++.+.+.|.++|++||+.+.+. .++
T Consensus 159 llllDEP~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcC
Confidence 99999999999999888876 666667666899999999998753 444
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.3e-18 Score=182.77 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=107.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.+++++..|. ...+.+++++|| |++++|+||||+|||||+|+|+|+... .+.
T Consensus 5 ~l~~~~l~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYP--DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeC--CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 367788876551 123569999998 899999999999999999999998621 011
Q ss_pred ccccccccc-cc---chhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA-SI---PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++++... .+ ...+ .++..++..+........+|.++++ +..+.+.+.+|+||
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 224444321 11 1111 1222334443344445667777766 55566778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCcccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~~ 634 (803)
||||||+|||+.....+. .+++.+.+. |.|+|++||+++....+++.
T Consensus 163 lLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d~i 210 (279)
T PRK13635 163 ILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQADRV 210 (279)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEE
Confidence 999999999999888886 677777654 89999999999987654433
No 115
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.76 E-value=5.6e-18 Score=175.90 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=104.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ...
T Consensus 7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 37788887655 24679999999 899999999999999999999998511 111
Q ss_pred cccccccccccc--hhH-------------------HHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 533 GLMVPAESASIP--YFD-------------------AIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d-------------------~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
..++++....++ ..+ .++..++..+ ........+|.++++ +..+.+.+.+|+++|||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 234444322111 111 2223333322 223344556666655 66677778999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhhCcc
Q 003687 590 EICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~~~~ 632 (803)
|||+|||+.....+. .+++.+. +.|.++|++||+.+....++
T Consensus 163 EPt~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sh~~~~~~~~d 205 (225)
T PRK10247 163 EITSALDESNKHNVN-EIIHRYVREQNIAVLWVTHDKDEINHAD 205 (225)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECChHHHHhCC
Confidence 999999999877776 5666654 45899999999998876443
No 116
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.76 E-value=5.5e-18 Score=180.76 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=102.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------- 529 (803)
.+.++|++..| +++.++++++| |++++|+||||||||||||+|+|+...
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 7 LVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred eEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 46778887654 34679999998 899999999999999999999998611
Q ss_pred hhccccccccccccc---hhHHH----------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 530 GICGLMVPAESASIP---YFDAI----------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 530 aq~G~~Vpa~~a~i~---~~d~I----------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
.+...++|+....++ ..+++ +..++..+......+.+|.++++ +..+.+.+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 011224444432221 11221 12223322233334567777765 55566778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~ 629 (803)
+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Confidence 999999999999999888886 66666654 4899999999987653
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4e-18 Score=174.75 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=99.9
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhcccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLM 535 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G~~ 535 (803)
++++++..| +++.+++++|| | +++|+||||||||||+|+|+|+... .....+
T Consensus 2 ~~~~~~~~~----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 2 QLENLTKRY----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred EEEEEEEEE----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 345555443 23578999998 7 9999999999999999999998621 111234
Q ss_pred ccccccccc---hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+|++...++ ..+. ++..++..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 555432221 1111 122223222222334456666655 666777799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
||+|||+.....+. .+++.+.+ +.|+|++||+.+... ++++
T Consensus 157 Pt~~LD~~~~~~l~-~~l~~~~~-~~tii~vsH~~~~~~~~~d~ 198 (211)
T cd03264 157 PTAGLDPEERIRFR-NLLSELGE-DRIVILSTHIVEDVESLCNQ 198 (211)
T ss_pred CcccCCHHHHHHHH-HHHHHHhC-CCEEEEEcCCHHHHHHhCCE
Confidence 99999999888876 77777765 589999999998764 4443
No 118
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.6e-18 Score=190.74 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=112.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGL 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~ 534 (803)
.+.++++++.| ++..++++++| |++++|+||||||||||||+|+|+.... +...
T Consensus 19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47888988766 34578999988 8999999999999999999999996211 1122
Q ss_pred cccccccccch---hHHH---------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 535 MVPAESASIPY---FDAI---------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 535 ~Vpa~~a~i~~---~d~I---------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
++++..+.++. .+++ +..++..+........+|.++++ ++.+.+.+.+|+++|||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD 174 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45554443332 1221 22223322223334456666655 66677779999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||+++||+.....+...+.+.+++.|.|+|++||+.+.+ .++++...+..+.+
T Consensus 175 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999988887555555566799999999999875 56665544444443
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.76 E-value=5.9e-18 Score=179.46 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=101.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ....
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 3 LEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 5667776655 24679999998 899999999999999999999998511 0112
Q ss_pred cccccccccc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhC------CC
Q 003687 534 LMVPAESASI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTAT------TS 582 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a------~~ 582 (803)
.++++..... ...+. ++..++..+........+|.++++ +..+.+.+ .+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 2444432221 11121 122223322223334556666665 44555556 48
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
|+++||||||+|||+.....+. .+++.+. +.|.++|++||+++... ++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 9999999999999999888886 6666665 67899999999998764 4443
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.2e-18 Score=179.85 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=104.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... .+.
T Consensus 11 ~l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 47788887655 24679999999 899999999999999999999998521 011
Q ss_pred cccccccccccc---hhHH-------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASIP---YFDA-------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~-------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
..++++....++ ..++ ++..++..+........+|.++++ +..+.+.+.+|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 166 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 234444322211 1111 122222222223334456766655 66667778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+++||||||+|||+.....+. .++..+.+ .|.++|++||+.+.. ..+++.
T Consensus 167 ~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred CEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999888886 66666654 489999999999876 445433
No 121
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=178.49 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=100.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------hhc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GIC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------------aq~ 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... .+.
T Consensus 6 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 6 LSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 6677777654 24679999999 899999999999999999999998611 011
Q ss_pred cccccccccccc---hhHHHh-------------------hhC-CCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 533 GLMVPAESASIP---YFDAIM-------------------LHM-KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d~I~-------------------~~i-g~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
..++++....++ ..+++. ..+ +..+........+|.++++ +..+.+.+.+|+++||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 223444332221 112111 111 0111111223345555544 5556667899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
||||+|+|+.....+. .+++.+.+.|.|+|++||+.+.. +.+++.
T Consensus 162 DEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (237)
T PRK11614 162 DEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLVEQNANQALKLADRG 207 (237)
T ss_pred cCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHhhCCEE
Confidence 9999999999877776 67777776799999999998754 455443
No 122
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.76 E-value=5e-18 Score=179.46 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=104.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.++|++..| +++.+++++|| |++++|+||||+|||||+|+|+|+... .+..
T Consensus 2 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSA----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEE----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe
Confidence 4566776554 34679999998 899999999999999999999998511 1112
Q ss_pred cccccccccc---chhHHH-------------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 534 LMVPAESASI---PYFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i---~~~d~I-------------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.++|++.... ...+++ +..++..+........++.++++ +..+.+.+.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3455443211 111111 12222222223334456666655 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
++||||||+|||+.....+. .+++.+++.|.++|++||+++.. ..+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETL-ALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred EEEEcCccccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999888876 77777776789999999999877 445443
No 123
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=182.24 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=108.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.+++++..|.. .+...+++|+|| |++++|+||||||||||+|+|+|+... ....
T Consensus 5 l~~~~l~~~~~~-~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 5 IEVKNLTFKYKE-DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEEEeEEEEcCC-CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 667777765521 112469999999 899999999999999999999998611 1112
Q ss_pred cccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 534 LMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
.++++... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 34444321 11 11111 222233333334445567776655 666777799999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccccccccc
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+.+....+++...+..+
T Consensus 164 LDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G 216 (279)
T PRK13650 164 LDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNG 216 (279)
T ss_pred EECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999888886 66667665 499999999999887655543333333
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.4e-18 Score=177.09 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=101.9
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGL 534 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G~ 534 (803)
.+++++..| .+.+.+++++|| |++++|+||||||||||||+|+|+... .....
T Consensus 2 ~~~~l~~~~---~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 2 EFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred EEEEEEEEe---CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 345555444 111568999998 899999999999999999999998511 01123
Q ss_pred cccccccccc---hhH---------------------HHhhhCCCCC--CccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 535 MVPAESASIP---YFD---------------------AIMLHMKSYD--SPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 535 ~Vpa~~a~i~---~~d---------------------~I~~~ig~~d--~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
++|+....++ ..+ .++..++... ........+|.++++ +..+.+.+.+|+++|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444432221 111 1223333332 223344567777665 666677789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
|||||+|+|+.....+. .+++.+.+ .|.++|++||+.+.. ..+++.
T Consensus 159 lDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i 206 (242)
T cd03295 159 MDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRI 206 (242)
T ss_pred ecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 99999999999877776 66666654 489999999999864 444443
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.7e-18 Score=177.09 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=105.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+... ....
T Consensus 4 l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 4 IEFKEVSYSS----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 5677776554 24578999998 899999999999999999999998511 0112
Q ss_pred ccccccccccc--h-----------------hHHHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCC
Q 003687 534 LMVPAESASIP--Y-----------------FDAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 592 (803)
Q Consensus 534 ~~Vpa~~a~i~--~-----------------~d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~ 592 (803)
.++|+....++ . ...++..++.. +........+|.++++ +..+.+.+.+|+++||||||
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 23444322111 0 01122333332 1223344556766655 56666778999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003687 593 RGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 593 sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
+|||+.....+. .+++.+.+ .|.++|++||+.+... .+++...+..+
T Consensus 160 ~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 160 SALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999998877776 66666655 5899999999998754 45544333333
No 126
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=4.1e-18 Score=170.65 Aligned_cols=131 Identities=17% Similarity=0.086 Sum_probs=90.8
Q ss_pred eeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc------ccc-------ccccccchhHHHhhhCCCCC
Q 003687 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL------MVP-------AESASIPYFDAIMLHMKSYD 557 (803)
Q Consensus 495 ~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~------~Vp-------a~~a~i~~~d~I~~~ig~~d 557 (803)
.++++++| |++++|+||||||||||+|+|+|+.... .|. .+. ...+++++...++ ..+..+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLF-DTTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeee-cccHHH
Confidence 68999988 8999999999999999999999986221 111 000 0011222211122 123333
Q ss_pred CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 558 SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 558 ~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
++ ...++.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+. ++.++|++||+.++...++
T Consensus 94 ~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~~~~d 164 (178)
T cd03247 94 NL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWITHHLTGIEHMD 164 (178)
T ss_pred hh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhCC
Confidence 33 3456665554 66677779999999999999999998877776 6666665 4899999999998876443
No 127
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.7e-18 Score=179.63 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=105.4
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------h
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------I 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q 531 (803)
..+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+.... .
T Consensus 6 ~~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 357788887665 24679999999 8999999999999999999999986110 1
Q ss_pred ccccccccccccc---hhHHH-------------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCC
Q 003687 532 CGLMVPAESASIP---YFDAI-------------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d~I-------------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ 582 (803)
...|+|++...++ ..+.+ +..++..+........+|.++++ +..+.+.+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 1224444322111 11111 12222222223334556666655 5666777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
|+++||||||+|||+.....+. .++..+.+ .|.++|++||+.+.. .++++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999999888886 66666654 589999999999864 445433
No 128
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.75 E-value=6.9e-18 Score=174.40 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=102.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------------a 530 (803)
+.+++++..|....+.+.+++++|| |++++|+||||+|||||+++|+|+... .
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 4566766554211112679999998 899999999999999999999998511 0
Q ss_pred hccccccccccccc---hh----------------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 531 ICGLMVPAESASIP---YF----------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 531 q~G~~Vpa~~a~i~---~~----------------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
....++|+....++ .. ..++..++..+........++.++++ +..+.+.+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11223443321111 11 11222233333333344556666655 555666789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~ 633 (803)
++|||||++|+|+.....+. .+++.+.+ .+.++|++||+.+....+++
T Consensus 162 illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d~ 210 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTILIVTHDNRILDVADR 210 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 99999999999999888886 66666654 58999999999987655543
No 129
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.4e-18 Score=180.88 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=101.6
Q ss_pred ecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hc
Q 003687 481 NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------IC 532 (803)
Q Consensus 481 ~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~ 532 (803)
.++++.| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 28 ~~~~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 28 EEILKKT----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhc----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 3555444 35678999998 8999999999999999999999986110 11
Q ss_pred cccccccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 533 GLMVPAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
..++|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++|
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 234444332221 111 1222333333334445567777765 566777789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccc
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~ 633 (803)
|||||+|||+.....+. .++..+. +.|.++|++||+.+.. .++++
T Consensus 184 LDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 184 MDEAFSALDPLIRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred EcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999999999888886 6666664 4589999999999865 34443
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.75 E-value=9.1e-18 Score=173.64 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=101.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------- 530 (803)
+.+++++..|........+++++|| |++++|+||||||||||||+|+|+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 4566776554210011378999998 8999999999999999999999986110
Q ss_pred hcccccccccc--cc---chhHHH-----------------------hhhCCCC-CCccCCccchHHHHHH-HHHHHHhC
Q 003687 531 ICGLMVPAESA--SI---PYFDAI-----------------------MLHMKSY-DSPADGKSSFQVEMSE-IRSIVTAT 580 (803)
Q Consensus 531 q~G~~Vpa~~a--~i---~~~d~I-----------------------~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a 580 (803)
....++++... .. ...+++ +..++.. .........+|.++++ +..+.+.+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 01223444321 11 111111 1222221 1122334456666665 55666778
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh-Ccccc
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+|+++||||||+|||+.....+. .++..+.+. |.++|++||+.+.+. .+++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 999999999999999999888876 666666544 899999999998765 45443
No 131
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=7.6e-18 Score=173.62 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=103.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------hcccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLM 535 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----------------q~G~~ 535 (803)
.+.++++...| +++.+++++|| |++++|+||||||||||+|+|+|+.... ....+
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred eEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 47778887654 24579999998 8999999999999999999999985210 11224
Q ss_pred ccccccccc---hhHH------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 003687 536 VPAESASIP---YFDA------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 536 Vpa~~a~i~---~~d~------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~s 593 (803)
+++.....+ ..++ ++..++..+........++.++++ +..+.+.+.+|+++||||||+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 444322111 1111 222233332233334556666655 566667789999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
|||+.....+. .+++.+.+.|.++|++||+.+.+.
T Consensus 167 ~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 167 NLDLEGITLVN-RMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred cCCHHHHHHHH-HHHHHHHhCCCEEEEEecChhhhh
Confidence 99999877775 777777777899999999998764
No 132
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.75 E-value=1.6e-18 Score=176.25 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=101.5
Q ss_pred EEEeccccccccc--CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--hhhhccc------ccc-----c
Q 003687 478 LKMNGLSPYWFDA--AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGICGL------MVP-----A 538 (803)
Q Consensus 478 i~l~~l~p~~~~~--~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--~laq~G~------~Vp-----a 538 (803)
+.+++++..|... ..++.++++++| |++++|+||||||||||+|+|+|+. ... .|. .+. .
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhh
Confidence 6677877665210 013579999999 8999999999999999999999986 321 121 000 0
Q ss_pred cccccchhHHHhhhCCCCCCccCCc--cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 003687 539 ESASIPYFDAIMLHMKSYDSPADGK--SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 539 ~~a~i~~~d~I~~~ig~~d~l~~~~--stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g 615 (803)
..+++++...++..++..+++.... ..+|.++++ +..+.+.+.+|+++|||||++|||+.....+. .+++.+.++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~ 161 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTG 161 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 0112222222222233333322111 156666555 56667778999999999999999999888876 6677776679
Q ss_pred CEEEEEccChh--hhhCcccc
Q 003687 616 CLGIVSTHLHG--IFSLPLKI 634 (803)
Q Consensus 616 ~tvI~sTH~~e--L~~~~~~~ 634 (803)
.|+|++||+.+ +...+++.
T Consensus 162 ~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 162 RTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred CEEEEEecCchHHHHHhcCEE
Confidence 99999999985 33445443
No 133
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.75 E-value=4.7e-18 Score=172.86 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=97.8
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLM 535 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~ 535 (803)
.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ....+
T Consensus 2 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 2 AARNLACSR----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred EEEEEEEEE----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 345555444 34678999998 8999999999999999999999985110 11123
Q ss_pred ccccccccc---hhH-----------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 003687 536 VPAESASIP---YFD-----------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 536 Vpa~~a~i~---~~d-----------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sG 594 (803)
+++....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 444322111 111 1222233333333344566766655 5666677899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
||+.....+. .++..+.+.|.++|++||+...
T Consensus 158 LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 158 LDKAGVALLA-GLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCEEEEEEccccc
Confidence 9999877775 6666666678999999998753
No 134
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.75 E-value=5.2e-18 Score=179.51 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=104.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hccccccccccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP 544 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a~i~ 544 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ....++|+.....+
T Consensus 5 l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 5 VSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEeceEEEE----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 5677776655 24579999998 8999999999999999999999986221 11234555432111
Q ss_pred h-------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 003687 545 Y-------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 545 ~-------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~ 604 (803)
. ...++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1 011222334443344455667777665 56666778999999999999999999888876
Q ss_pred HHHHHHHHhc-CCEEEEEccChhhh-hCcc
Q 003687 605 GSIIETLDNI-GCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 605 ~~ILe~L~~~-g~tvI~sTH~~eL~-~~~~ 632 (803)
.++..+.+. |.++|++||+.+.+ ..++
T Consensus 161 -~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 161 -DLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred -HHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 666666544 89999999999876 3444
No 135
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.75 E-value=7e-18 Score=176.51 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcccccc-ccccccc---
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVP-AESASIP--- 544 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~Vp-a~~a~i~--- 544 (803)
+.+.++++++| |++++|+||||||||||||+|+|+.... ....+++ +....++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 45679999998 8999999999999999999999986210 0112333 2211111
Q ss_pred hhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 003687 545 YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 545 ~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~ 602 (803)
..+. ++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 1111 122223322233334556666665 555667789999999999999999998888
Q ss_pred HHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 603 IAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 603 L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+. .++..+.+ .+.++|++||+.+++ .++++.
T Consensus 192 l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 192 IR-NFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred HH-HHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 86 66666654 589999999999875 445443
No 136
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=6.4e-19 Score=177.24 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=110.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.+..+++.+.| +++.|.+++|| |+++++.||||+||||.+.||.|++. .++.
T Consensus 4 ~L~a~~l~K~y----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 4 TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred EEEehhhhHhh----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 36678888887 57899999999 89999999999999999999999972 1222
Q ss_pred cccccccccccchhHHHhhhCCCCCCccC---------------------------------CccchHHH-HHHHHHHHH
Q 003687 533 GLMVPAESASIPYFDAIMLHMKSYDSPAD---------------------------------GKSSFQVE-MSEIRSIVT 578 (803)
Q Consensus 533 G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~---------------------------------~~stfs~e-m~~l~~iLa 578 (803)
|. +++||-..||..+++.||+.. ...++|.+ -+++..+.+
T Consensus 80 Gi------gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 80 GI------GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred Cc------ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 21 334444444444444443321 11223333 334445666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCcccccccccceeE
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYKAMG 643 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL-~~~~~~~~~v~~~~m~ 643 (803)
.+.+|+++||||||+|.||..-..| ..++++|+++|.-|+++-|+... ...+++...+..+++-
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE
Confidence 6899999999999999999988888 59999999999999999999754 3555554444444443
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=8.2e-18 Score=180.26 Aligned_cols=161 Identities=15% Similarity=0.145 Sum_probs=108.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G 533 (803)
+.++|++..| .++..++++++| |++++|+||||||||||+|+|+|+.... ...
T Consensus 4 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 4 IETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred EEEEEEEEEe---CCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5677777655 223468999998 8999999999999999999999986110 112
Q ss_pred cccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 534 LMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
.++++... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++|
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 23444321 11 11111 222233333334445567777665 566677789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+++.. +.+++...+..+.+
T Consensus 161 lDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 161 LDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 99999999999888876 66666655 489999999999876 45655444444433
No 138
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.75 E-value=7.3e-18 Score=177.70 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=103.3
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ 530 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------ 530 (803)
.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 2 RFSDVTKRF----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred EEEEEEEEe----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 455665544 23578999998 8999999999999999999999986210
Q ss_pred ---------hccccccccccccc---hhHH----------------------HhhhCCCCCCccCCccchHHHHHH-HHH
Q 003687 531 ---------ICGLMVPAESASIP---YFDA----------------------IMLHMKSYDSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 531 ---------q~G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l~~~~stfs~em~~-l~~ 575 (803)
+...++++....++ ..++ ++..++..+........++.++++ +..
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHH
Confidence 11223343322211 1111 122223322223334556666655 566
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+++.. .++++...+.++
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 66778999999999999999999888876 66666654 589999999999876 455544333333
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.75 E-value=8.7e-18 Score=178.25 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=103.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--h-------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--I------------------- 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--q------------------- 531 (803)
.++++|++..| +++.++++++| |++++|+||||||||||+|+|+|+.... .
T Consensus 4 ~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 4 IIRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred EEEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 36777887655 34679999998 8999999999999999999999986321 0
Q ss_pred -------ccccccccccccc---hhHHH-----------------------------hhhCCCCCCccCCccchHHHHHH
Q 003687 532 -------CGLMVPAESASIP---YFDAI-----------------------------MLHMKSYDSPADGKSSFQVEMSE 572 (803)
Q Consensus 532 -------~G~~Vpa~~a~i~---~~d~I-----------------------------~~~ig~~d~l~~~~stfs~em~~ 572 (803)
...++|+....++ ..+.+ +..++..+........+|.++++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence 0123444322211 11111 11122222222333456666555
Q ss_pred -HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 573 -IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 573 -l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+..+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+++ ..+++.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 55566678999999999999999999888886 66666654 589999999999864 455443
No 140
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.8e-18 Score=182.20 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=113.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccc------ccccc---
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGL------MVPAE--- 539 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~------~Vpa~--- 539 (803)
+.+.+.++.| +...+++||++ |+.++++|||||||||+||+|+|+..... .|. .++..
T Consensus 3 i~i~~~~~~~----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 3 IRINNVKKRF----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred eeehhhhhhc----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4556666665 34567788888 89999999999999999999999972211 111 11211
Q ss_pred ccccchhHHHhhhCCCCCCccCCcc---------------------------------chHHHHH-HHHHHHHhCCCCcE
Q 003687 540 SASIPYFDAIMLHMKSYDSPADGKS---------------------------------SFQVEMS-EIRSIVTATTSRSL 585 (803)
Q Consensus 540 ~a~i~~~d~I~~~ig~~d~l~~~~s---------------------------------tfs~em~-~l~~iLa~a~~psL 585 (803)
.+.+.+-..+|.+|++.||+.+++. .++.+.+ +++.+.+.+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 1344444567778888888776641 1223332 24445566899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccceeEEE
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~~ 645 (803)
+|||||+++||..-+..+-.-+.+...+.|.+++|+|||.+.+ +++++...+.++.+...
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 9999999999999988886444444456699999999999876 56666655566655443
No 141
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=2.6e-18 Score=172.82 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccccc---------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA--------- 538 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa--------- 538 (803)
.++++++.+.| ++++++| |++++|+||||||||||+|+|+|+..... .|..+..
T Consensus 4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 36677776532 7888888 89999999999999999999999863211 1111110
Q ss_pred cccccchh---HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 003687 539 ESASIPYF---DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 614 (803)
Q Consensus 539 ~~a~i~~~---d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~ 614 (803)
..+++++. ..++..++..+++.... .++.++++ +..+.+.+.+|+++|||||++|+|+.....+. .+++.+.+.
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~ 153 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADA 153 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHC
Confidence 01111111 01222333333332211 16666655 66677778999999999999999999888886 666777666
Q ss_pred CCEEEEEccChhhh-hCcc
Q 003687 615 GCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 615 g~tvI~sTH~~eL~-~~~~ 632 (803)
+.++|++||+.+.. .+++
T Consensus 154 ~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 154 GKAVLLISSELDELLGLCD 172 (182)
T ss_pred CCEEEEEeCCHHHHHHhCC
Confidence 89999999998755 3344
No 142
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9e-18 Score=180.21 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=107.8
Q ss_pred eEEEecccccccccC--CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------
Q 003687 477 CLKMNGLSPYWFDAA--EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~--~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------- 529 (803)
-+.++|++..|.... +++.++++++| |++++|+||||||||||+|+|+|+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 467788876652211 13579999999 899999999999999999999999621
Q ss_pred hhcccccccccc--ccc--hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 530 GICGLMVPAESA--SIP--YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 530 aq~G~~Vpa~~a--~i~--~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
.+...++|+... .+. ..+ .++..++..+........+|.++++ +..+.+.+.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 011224444321 110 011 1222334433344445677777766 55666778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~ 633 (803)
+++||||||+|||+.....+. .++..+.+ .|.|+|++||+++.+..+++
T Consensus 164 ~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 999999999999999988886 67777754 59999999999998765443
No 143
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.9e-18 Score=179.44 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=104.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~ 532 (803)
.+.+++++..|. ...+.+++|+|| |++++|+||||||||||+|+|+|+.... +.
T Consensus 7 ~l~i~~l~~~~~--~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQ--SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcC--CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 467788876552 112468999998 8999999999999999999999986210 11
Q ss_pred ccccccccc-ccc---hh---------------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA-SIP---YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i~---~~---------------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++++... .++ .. ..++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 223444321 111 00 11222333333333445567777665 66677779999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~ 632 (803)
||||||+|||+.....+. .++..+.+ .|.|+|++||+.+....++
T Consensus 165 lLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~d 210 (269)
T PRK13648 165 ILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEAD 210 (269)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcCC
Confidence 999999999999888886 56666654 4899999999998765443
No 144
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.3e-18 Score=179.19 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=104.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..|. .+++.+++++|| |++++|+||||||||||+|+|+|+... ...
T Consensus 7 ~l~~~nl~~~~~--~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 7 MIKVENVSFSYP--NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred EEEEEeEEEEcC--CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 467788876551 124579999998 899999999999999999999999621 011
Q ss_pred ccccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
..++|+... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 224444321 11 11111 122223332233344566766665 56667778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhCccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~~ 633 (803)
||||||+|||+.....+. .+++.+.+. +.++|++||+.+....+++
T Consensus 165 lLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~ 211 (271)
T PRK13632 165 IFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAILADK 211 (271)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHhhCCE
Confidence 999999999999888876 666666554 5899999999987654443
No 145
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7.4e-18 Score=180.03 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=103.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------hhcccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLM 535 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------------aq~G~~ 535 (803)
.+.+++++..| .+++.+++|+|| |++++|+||||||||||+|+|+|+... .....|
T Consensus 6 ~l~~~~l~~~~---~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTW---RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEe---cCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 47778887655 234679999998 899999999999999999999998511 011234
Q ss_pred ccccccc---cc--h-------------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 536 VPAESAS---IP--Y-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 536 Vpa~~a~---i~--~-------------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
+|+.... .+ . ...++..++..+........+|.++++ +..+.+.+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4443211 00 0 011222333333333444567777665 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~ 628 (803)
++||||||+|||+.....+. .++..+++.|.++|++||+.+.+
T Consensus 163 llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~ 205 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSV 205 (272)
T ss_pred EEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999999888886 67777776789999999999765
No 146
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.75 E-value=6.3e-18 Score=174.23 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=101.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.+++++..|. ..++.+++++|| |++++|+||||||||||+++|+|+... ....
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcC--CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56777766551 112568999998 899999999999999999999998511 0112
Q ss_pred ccccccccccc--hhHHH---------------hhhCCCCCCccC-----------CccchHHHHHH-HHHHHHhCCCCc
Q 003687 534 LMVPAESASIP--YFDAI---------------MLHMKSYDSPAD-----------GKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I---------------~~~ig~~d~l~~-----------~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.++++....++ ..+.+ +..++..+.... ....+|.++++ +..+.+.+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 34454432221 11111 111121111111 12366766665 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
++||||||+|||+.....+. .+++.+.+. .++|++||+.++...+++.
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~tii~~sH~~~~~~~~d~v 208 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGD-KTLIIITHRPSLLDLVDRI 208 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCC-CEEEEEeCCHHHHHhCCEE
Confidence 99999999999999888886 666666554 8999999999876655433
No 147
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.75 E-value=1e-17 Score=177.18 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=106.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.+.++|++..| +++.++++++| |++++|+||||+|||||+|+|+|+....
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 5 KLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred cEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 47888887665 24679999999 8999999999999999999999986210
Q ss_pred -----------hccccccccccccc---hhHH----------------------HhhhCCCCCCc-cCCccchHHHHHH-
Q 003687 531 -----------ICGLMVPAESASIP---YFDA----------------------IMLHMKSYDSP-ADGKSSFQVEMSE- 572 (803)
Q Consensus 531 -----------q~G~~Vpa~~a~i~---~~d~----------------------I~~~ig~~d~l-~~~~stfs~em~~- 572 (803)
+.-.++|+....++ ..++ ++..++..+.. ......++.++++
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 01123444322111 1122 12223332222 2334566776665
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+..+.+.+.+|+++||||||+|||+.....+. .+++.+.+.|+++|++||+.+... ++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~~~d~i 222 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHV 222 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 55666778999999999999999999888886 677777767999999999998765 44443
No 148
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.75 E-value=6.3e-18 Score=170.14 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=96.6
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhh---Hhhhhccccccc----cccccchhHHHhhhCCCCC-Ccc
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAA---SLLGICGLMVPA----ESASIPYFDAIMLHMKSYD-SPA 560 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl---~~laq~G~~Vpa----~~a~i~~~d~I~~~ig~~d-~l~ 560 (803)
.+.+++++|| |++++|+||||||||||||++.+- +.+ .+. .+. ...++++ ...+..++..+ ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~--~~~-~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~ 82 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARL--ISF-LPKFSRNKLIFIDQ-LQFLIDVGLGYLTLG 82 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEE--CCc-ccccccccEEEEhH-HHHHHHcCCCccccC
Confidence 3578899888 899999999999999999998521 111 011 111 1122333 34566677654 255
Q ss_pred CCccchHHHHHH-HHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 561 DGKSSFQVEMSE-IRSIVTATTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 561 ~~~stfs~em~~-l~~iLa~a~~--psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
.....++.++++ +..+.+.+.+ |+++|+|||++|+|+.....+. .+++.+.+.|.++|++||+.++...++
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIivSH~~~~~~~~d 156 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIEHNLDVLSSAD 156 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 566778877766 5556666888 9999999999999999888886 566666667999999999998765544
No 149
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=8.8e-18 Score=172.25 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=91.1
Q ss_pred ccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccccccccccc---hhHHH----
Q 003687 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YFDAI---- 549 (803)
Q Consensus 499 dIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~Vpa~~a~i~---~~d~I---- 549 (803)
++|| |++++|+||||||||||+|+|+|+.... ....++++....++ ..+++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 6776 8999999999999999999999986210 01224444432221 11222
Q ss_pred -----------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 003687 550 -----------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 550 -----------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L 611 (803)
+..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 12222222222333456766665 55666778999999999999999999888886 666666
Q ss_pred H-hcCCEEEEEccChhhh-hCcccc
Q 003687 612 D-NIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 612 ~-~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
. +.|.++|++||+.+.. .++++.
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~i 199 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQRV 199 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCEE
Confidence 5 4589999999999876 345543
No 150
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.75 E-value=9.8e-18 Score=174.20 Aligned_cols=151 Identities=18% Similarity=0.102 Sum_probs=101.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccc---cccccc---
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV---PAESAS--- 542 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~V---pa~~a~--- 542 (803)
+.+.+++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .|..+ ......
T Consensus 23 l~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEV----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE 98 (224)
T ss_pred hhhhhhhhhc----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC
Confidence 4455665544 45789999998 89999999999999999999999862110 01000 000000
Q ss_pred cchhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 543 IPYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 543 i~~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
....+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+...
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 01111 1222334433344445667777665 5666777899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 601 ~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
..+. .+++.+.+.|.++|++||+.+.+. .+++
T Consensus 179 ~~~~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 179 EKCQ-RRLRELLKQGKTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred HHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 8886 566666556899999999998764 4443
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=7.9e-18 Score=194.92 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=112.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------I 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q 531 (803)
.+.++|+++.| +++.+++++|| |++++|+||||||||||||+|+|+.... .
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 37788887765 34679999999 8999999999999999999999986110 0
Q ss_pred ccccccccccccc---hhH-----------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 532 CGLMVPAESASIP---YFD-----------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d-----------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
...+++++...++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1124454432111 111 1233344444444555678887776 556667789999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
||+|||+.....+. .+++.+.+.|.++|++||+.+.+ .++++...+.++.
T Consensus 167 Pt~~LD~~~~~~l~-~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~ 217 (510)
T PRK15439 167 PTASLTPAETERLF-SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGT 217 (510)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999888886 67777777799999999999876 4455444444443
No 152
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=7.3e-18 Score=174.80 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=98.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G 533 (803)
+.++|++..| .+++.++++++| |++++|+||||||||||||+|+|+.... ...
T Consensus 3 l~~~~l~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 3 IEFENVNFSY---DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred EEEEEEEEec---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5677777654 223468999998 8999999999999999999999986210 112
Q ss_pred ccccccccccc--hhHHHh---------------hhCCC-----------CCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 534 LMVPAESASIP--YFDAIM---------------LHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I~---------------~~ig~-----------~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.|+|+....++ ..+.+. ..++. ..........++.++++ +..+.+.+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 23444322111 001110 00011 00111122456666655 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
++||||||+|||+.....+. .++..+. .+.++|++||+.+....++
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~~~~d 205 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLM-KGRTSIIIAHRLSTIKNAD 205 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhc-CCCEEEEEecCHHHHhhCC
Confidence 99999999999999888886 6666665 4899999999998875543
No 153
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=179.90 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=109.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.+.++|++..| .+++.+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 5 ~l~~~~l~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 5 ILKVEELNYNY---SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred eEEEEeEEEEe---CCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36778887665 234679999999 8999999999999999999999986110
Q ss_pred hcccccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 531 ICGLMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 531 q~G~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
....++|+... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 11234454421 11 11111 122233333333445566777665 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccccccccee
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.+. ++++...+.++.+
T Consensus 162 lLilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i 220 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220 (283)
T ss_pred EEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999888886 66666655 4899999999998864 5554444444433
No 154
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=180.46 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=108.4
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
+.+++++..|.... .++.+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 45677766552111 12368999999 8999999999999999999999986210
Q ss_pred --hccccccccc--ccc--chhH---------------------HHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 --ICGLMVPAES--ASI--PYFD---------------------AIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~--a~i--~~~d---------------------~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
+...++++.. ..+ ...+ .++..++..+ ........+|.++++ ++.+.+.+.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 0112444432 111 1111 1222233321 223344566666655 566666789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
+|+++||||||+|||+.....+. .+++.+++.|.|+|++||+++++ .++++...+..+.+
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999888876 77777776799999999999876 45665544444444
No 155
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=193.42 Aligned_cols=160 Identities=13% Similarity=0.170 Sum_probs=111.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
+.++|+++.| +++.+++++|| |++++|+||||||||||||+|+|+.... +.
T Consensus 5 i~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 5 LQLKGIDKAF----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred EEEeeeEEEe----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 6778887665 34679999999 8999999999999999999999986110 11
Q ss_pred cccccccccccc---hhH-------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASIP---YFD-------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~---~~d-------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
..++++....++ ..+ .++..++..+.......++|.++++ +..+.+.+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 123444321111 111 1223334433334445677877776 55566778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+.+ .++++...+..+.+
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999888886 67777777789999999999876 45555444444443
No 156
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=1.1e-17 Score=174.54 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=99.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGL 534 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G~ 534 (803)
.++|++..|. .+++.++++++| |++++|+||||||||||+|+|+|+.... ....
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 2 TFEHVRFRYK--PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEEEecC--CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4556654441 123578999998 8999999999999999999999986210 1123
Q ss_pred cccccccccc--hhHHHh---------------hhCCC-----------CCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 535 MVPAESASIP--YFDAIM---------------LHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I~---------------~~ig~-----------~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
++|+....++ ..+++. ...+. ..........+|.++++ +..+.+.+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 4444432111 111110 00010 11111233567777665 5556677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+||||||+|||+.....+. .++..+.+ |.++|++||+.+....+++
T Consensus 160 lllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~d~ 205 (237)
T cd03252 160 LIFDEATSALDYESEHAIM-RNMHDICA-GRTVIIIAHRLSTVKNADR 205 (237)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcC-CCEEEEEeCCHHHHHhCCE
Confidence 9999999999999888886 66666654 8999999999998765443
No 157
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5.9e-18 Score=176.05 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=101.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGL 534 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G~ 534 (803)
.++|++..|. ..+..++++++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 2 EFKNVTFRYP--GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred EEEEEEEEeC--CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3455554441 112368899888 8999999999999999999999996210 1122
Q ss_pred cccccccccc--hhHHHhh------------------------hC--CCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 535 MVPAESASIP--YFDAIML------------------------HM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I~~------------------------~i--g~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
++++....++ ..+++.. .+ +...........++.++++ +..+.+.+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 4444322111 1111100 00 1111111223456666554 6667777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~ 641 (803)
+||||||+|||+.....+. .+++.+.+ +.++|++||+.+....+++...+.++.
T Consensus 160 llLDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~ 213 (234)
T cd03251 160 LILDEATSALDTESERLVQ-AALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGK 213 (234)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCe
Confidence 9999999999999888886 66666654 889999999998876554443333433
No 158
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=179.99 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=106.3
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
+.++|++..|.... .++.+++|++| |++++|+||||||||||||+|+|+....
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 45677776552100 12469999998 8999999999999999999999986110
Q ss_pred --hccccccccc--ccc--chhHH---------------------HhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 --ICGLMVPAES--ASI--PYFDA---------------------IMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~--a~i--~~~d~---------------------I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
....++|+.. ..+ ...+. ++..++.. +........+|.++++ +..+.+.+.
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~ 162 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY 162 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1123444432 111 11111 22223433 2234445677777776 556667789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+++.+ ..+++.
T Consensus 163 ~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 163 EPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999888876 77777776799999999999875 455543
No 159
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=178.33 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=104.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------I 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------q 531 (803)
+.++|++..| .++..+++++|| |++++|+||||||||||+|+|+|+.... .
T Consensus 2 l~~~~l~~~~---~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSY---PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEe---CCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 4566776554 223568999998 8999999999999999999999986110 1
Q ss_pred cccccccccc--cc--chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 532 CGLMVPAESA--SI--PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 532 ~G~~Vpa~~a--~i--~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
...++|+... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1224444321 11 11111 222233333333344566777665 5556677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIK 635 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~ 635 (803)
+||||||+|||+.....+. .++..+.+.|.|+|++||+.+.+. ++++..
T Consensus 159 lllDEPt~gLD~~~~~~l~-~~l~~l~~~~~til~vtH~~~~~~~~~d~i~ 208 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIM-KLLYDLNKEGITIIISTHDVDLVPVYADKVY 208 (275)
T ss_pred EEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999988886 666677666899999999998764 455443
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=193.02 Aligned_cols=161 Identities=13% Similarity=0.176 Sum_probs=111.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------h-h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------G-I 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------a-q 531 (803)
.+.++|+++.| +++.+++|+|| |++++|+||||||||||+|+|+|+... . .
T Consensus 5 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 36778887665 34679999999 899999999999999999999998611 0 1
Q ss_pred ccccccccccccc---hhH----------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHh
Q 003687 532 CGLMVPAESASIP---YFD----------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTA 579 (803)
Q Consensus 532 ~G~~Vpa~~a~i~---~~d----------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~ 579 (803)
...+++++...++ ..+ .++..++..+......+++|.++++ +..+.+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 1234444321111 111 1223334433334445677877776 5556677
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
+.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+.+.+. ++++...+..+.+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999888886 777777777999999999998764 4554433434433
No 161
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.74 E-value=8.5e-18 Score=175.90 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=105.5
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMV 536 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~V 536 (803)
.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ....++
T Consensus 2 ~i~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 2 EIANISKRF----GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred EEEEEEEEE----CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 345555444 24579999998 8999999999999999999999985210 112244
Q ss_pred cccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 003687 537 PAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP 591 (803)
|+....++ ..+ .++..++..+........+|.++++ +..+.+.+.+|+++|||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44322211 111 1222233322233334566766665 5666677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhh-hCccccccccccee
Q 003687 592 CRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
++|+|+.....+. .+++.+.+. ++++|++||+.+.+ ..+++...+..+.+
T Consensus 158 ~~~LD~~~~~~~~-~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 158 FGALDAKVRKELR-SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred cccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 9999999888876 666666654 89999999999875 45555444444443
No 162
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=187.16 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=103.0
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccc
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP 544 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~ 544 (803)
...+++++|| |++++|+||||||||||||+|+|+.... ....|+++....++
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 3458999998 8999999999999999999999986110 12235555433222
Q ss_pred h---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 545 Y---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 545 ~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
. .+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1 11 1233344444444555677887766 566677799999999999999999998
Q ss_pred HHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCcccccccccc
Q 003687 600 GTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 600 g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
...+. .++..+. +.|+|+|++||+.+.+ .++++...+..+
T Consensus 200 r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 200 RTEMQ-DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred HHHHH-HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 88886 5555664 4689999999999876 345544333333
No 163
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.74 E-value=7.9e-18 Score=187.01 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=106.7
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------------------------hhcccccccccccc
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 543 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------------aq~G~~Vpa~~a~i 543 (803)
+++.+++|+|| |++++|+||||||||||||+|+|+... .+...++++....+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35678899998 899999999999999999999999610 12334566554433
Q ss_pred ch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 003687 544 PY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 544 ~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~ 598 (803)
+. .+ .++..++...........+|.++++ +..+.+.+.+|+++||||||++||+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 22 11 1233334444444556677888776 56677779999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 599 KGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 599 ~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
.+..+. .++..+ .+.|.|+||+||+++++ .++++...+..+.+
T Consensus 164 ~r~~l~-~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 164 IRDSMQ-DELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999987 444555 45589999999999875 55655444444443
No 164
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=1.1e-17 Score=172.52 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=100.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.++|++..|. .+++.+++++|| |++++|+||||||||||+|+|+|+... .+..
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYR--PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecC--CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 66777766552 123579999999 899999999999999999999998511 1112
Q ss_pred ccccccccccc--hhHH--------------HhhhCCCCCCc-----------cCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 534 LMVPAESASIP--YFDA--------------IMLHMKSYDSP-----------ADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~--------------I~~~ig~~d~l-----------~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
.++|+....++ ..++ .+..++..+.+ ......++.++++ +..+.+.+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 24444432211 0111 11112211111 1234556666655 5566677899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
+|||||++|||+.....+. .+++.+.+ +.++|++||+.+....++
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~d 205 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFK-DCTVLTIAHRLDTIIDSD 205 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcC-CCEEEEEeCCHHHHhhCC
Confidence 9999999999999888776 66666654 689999999998876543
No 165
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.4e-17 Score=177.16 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=116.4
Q ss_pred EEEecccccccc-cCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-----------------------h
Q 003687 478 LKMNGLSPYWFD-AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------------L 529 (803)
Q Consensus 478 i~l~~l~p~~~~-~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-----------------------l 529 (803)
|+++++++.|.. ..+...+++|+|| |++++|+|.+|+|||||+|+|.++.. .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 567888877754 2234578999999 89999999999999999999999851 1
Q ss_pred hhccccccccccccc---h---------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 530 GICGLMVPAESASIP---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 530 aq~G~~Vpa~~a~i~---~---------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
.+...+++++...+. . +..++...|..|......+.+|.+.+| ...+.+.+.+|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 122223444332221 0 123444556666666677788888776 556667799999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
++|.||+||+|||.....|+ .++..+ .+.|.|++++||.++..+ .+++...+..+
T Consensus 162 iLL~DEaTSALDP~TT~sIL-~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G 218 (339)
T COG1135 162 ILLCDEATSALDPETTQSIL-ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218 (339)
T ss_pred EEEecCccccCChHHHHHHH-HHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC
Confidence 99999999999999999998 566665 567999999999999874 44444333333
No 166
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=193.04 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=111.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-hc-------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-IC------------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-q~------------------- 532 (803)
.++++|+++.| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..
T Consensus 5 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 5 LLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred eEEEeeeEEEe----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 36778887665 34679999999 8999999999999999999999986420 11
Q ss_pred ---ccccccccccc---chhH------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCC
Q 003687 533 ---GLMVPAESASI---PYFD------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 533 ---G~~Vpa~~a~i---~~~d------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
..++|++...+ ...+ .++..++..+.......++|.++++ +..+.+.+.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 12334332111 1111 1222333333334445677777766 566677789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
+|+++||||||+|||+.....+. .++..+.+.|.++|++||+.+.+. ++++...+..+.+
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999888886 677777777899999999998764 4555444444443
No 167
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=3.8e-18 Score=176.72 Aligned_cols=158 Identities=22% Similarity=0.289 Sum_probs=108.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccc---ccccc------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGL---MVPAE------ 539 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~---~Vpa~------ 539 (803)
+.++++++.| ++-.++||+|| |++++|+|||||||||++++|.|+..... .|- ..|+.
T Consensus 5 L~v~~l~k~F----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 5 LEVRGLSKRF----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeccceeec----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 5678888876 67899999999 89999999999999999999999862211 111 11111
Q ss_pred ccccchhHHHhhhCCCCCCccCC-------------------------------------------ccchHHH-HHHHHH
Q 003687 540 SASIPYFDAIMLHMKSYDSPADG-------------------------------------------KSSFQVE-MSEIRS 575 (803)
Q Consensus 540 ~a~i~~~d~I~~~ig~~d~l~~~-------------------------------------------~stfs~e-m~~l~~ 575 (803)
.++-+|..++|..|++.||+... ...++.+ ++.+..
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 02223334455555544443221 1222222 333555
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+.+.+++|+|+|||||.+|+++.+...+. .++..+.+ .|.|++++-|++++. .++++...+.++
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCC
Confidence 66779999999999999999999999997 77777776 579999999999986 455444333333
No 168
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.7e-17 Score=182.01 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=110.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----h-------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----a------------------- 530 (803)
++++|++..|....+...+++|||| |++++|+|+||||||||+|+|+|+... .
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 6778887665221112469999999 899999999999999999999998621 0
Q ss_pred -----hcccccccccc--ccch---h----------------------HHHhhhCCCCC---CccCCccchHHHHHH-HH
Q 003687 531 -----ICGLMVPAESA--SIPY---F----------------------DAIMLHMKSYD---SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 531 -----q~G~~Vpa~~a--~i~~---~----------------------d~I~~~ig~~d---~l~~~~stfs~em~~-l~ 574 (803)
+...++|+... ..+. . ..++..++..+ ........+|.+|++ +.
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 01234454421 1110 0 11223333322 123345677888876 66
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++|++|||++++ .++++...+..+
T Consensus 164 iArAL~~~P~llilDEPts~LD~~~~~~il-~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G 230 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 677778999999999999999999988887 66666654 689999999999887 455544333333
No 169
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.9e-18 Score=176.15 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=104.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh---------------------c
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------C 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq---------------------~ 532 (803)
+.+++++..| .++..+++|+++ |++++|+||||||||||+++++|+..... .
T Consensus 4 i~~~~l~~~y---~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEc---CCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 4556665444 333689999998 89999999999999999999999972211 1
Q ss_pred ccccccccc--cc--ch---------------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 533 GLMVPAESA--SI--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 533 G~~Vpa~~a--~i--~~---------------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLl 586 (803)
-.+|.+... .+ .. ....+..++..+........+|.+.+| ++.+-..+.+|+++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 112222110 00 00 112333445555555555666665544 66666668999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhhC-ccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSL-PLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~-~~~ 633 (803)
||||||+|||+.....++ .++..+.+. |.|+|++|||++.+.. +++
T Consensus 161 iLDEPta~LD~~~~~~l~-~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 161 LLDEPTAGLDPKGRRELL-ELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred EEcCCCCCCCHHHHHHHH-HHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 999999999999888886 777777665 7999999999987653 544
No 170
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.74 E-value=1.3e-17 Score=192.07 Aligned_cols=159 Identities=12% Similarity=0.060 Sum_probs=110.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G 533 (803)
++++|++..| +++.+++++|| |++++|+||||||||||||+|+|+.... +.-
T Consensus 4 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 4 LQISQGTFRL----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred EEEEeEEEEc----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 6677887665 24569999998 8999999999999999999999986210 001
Q ss_pred ccccccccc-----------cch-------------hHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESAS-----------IPY-------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~-----------i~~-------------~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.++++.... +.. ...++..++..+......+.+|.++++ ++.+.+.+.+|+++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 123332110 000 112334445544445556778888776 5566777899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~ 641 (803)
||||+|||+.....+. .+++.+.+.|.++|++||+.+.+. .+++...+..+.
T Consensus 160 DEPt~~LD~~~~~~l~-~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 160 DEPFDGLDVASRQQLA-ELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCT 212 (490)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 9999999999888886 677777767899999999998754 444443333333
No 171
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.74 E-value=2.3e-17 Score=175.59 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=103.1
Q ss_pred EEEeccccccccc-----CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------
Q 003687 478 LKMNGLSPYWFDA-----AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------- 529 (803)
Q Consensus 478 i~l~~l~p~~~~~-----~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------- 529 (803)
+.+++++..|... .+++.+++|+|| |++++|+||||||||||||+|+|+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 5566776554211 024679999999 899999999999999999999998510
Q ss_pred ----hhcccccccccc-cc----chhH----------------------HHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 530 ----GICGLMVPAESA-SI----PYFD----------------------AIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 530 ----aq~G~~Vpa~~a-~i----~~~d----------------------~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
.+...++|+... .+ ...+ .++..++.. .........++.++++ +..+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la 162 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA 162 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 011234454421 11 1111 122233332 1223334556666665 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+.+.+. ++++
T Consensus 163 ral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 163 RALAVKPKLIVLDEAVSNLDMVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 6778999999999999999999888876 66666654 4899999999998764 4443
No 172
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=1.7e-17 Score=173.15 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=98.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGL 534 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G~ 534 (803)
.++|++..|.. .+++.++++++| |++++|+||||||||||+|+|+|+.... ....
T Consensus 2 ~i~~l~~~~~~-~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 2 EFKNVSFRYPS-RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred eEEEEEEecCC-CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 34556544411 123468999888 8999999999999999999999985110 1122
Q ss_pred cccccccccc--hhHHHhh---------------hCCC-----------CCCccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 535 MVPAESASIP--YFDAIML---------------HMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I~~---------------~ig~-----------~d~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
++++....++ ..+.+.. ..+. ..........++.++++ +..+.+.+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 3343321111 1111100 0010 00111223456666665 5556667899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
+||||||+|||+.....+. .+++.+. .|.++|++||+.++...+++.
T Consensus 161 lllDEP~~gLD~~~~~~l~-~~l~~~~-~g~~vi~~sh~~~~~~~~d~v 207 (238)
T cd03249 161 LLLDEATSALDAESEKLVQ-EALDRAM-KGRTTIVIAHRLSTIRNADLI 207 (238)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhc-CCCEEEEEeCCHHHHhhCCEE
Confidence 9999999999999888876 6666666 689999999999887654433
No 173
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=182.04 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=107.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----h-------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----a------------------- 530 (803)
++++|++..|....+...+++|+|| |++++|+|+||||||||+|+|+|+... .
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 5777887766322234579999999 899999999999999999999998520 0
Q ss_pred -----hcccccccccc--ccc---hhH---------------------------HHhhhCCCCCC---ccCCccchHHHH
Q 003687 531 -----ICGLMVPAESA--SIP---YFD---------------------------AIMLHMKSYDS---PADGKSSFQVEM 570 (803)
Q Consensus 531 -----q~G~~Vpa~~a--~i~---~~d---------------------------~I~~~ig~~d~---l~~~~stfs~em 570 (803)
....++++... ..+ ..+ .++..++..+. .......+|.++
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 01224554432 111 011 11222233221 123345677777
Q ss_pred HH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 571 SE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 571 ~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
++ +..+.+.+.+|++||+||||+|||+.....+. .+++.+.+ .|.|+||+|||++++. ++++.
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 66 66677779999999999999999999988887 66666765 5999999999998874 45544
No 174
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=180.36 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=109.5
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh---------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------- 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq--------------------- 531 (803)
+.++|++..|.... .+..+++++|| |++++|+||||||||||+|+|+|+.....
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 56677776552111 12368999999 89999999999999999999999862100
Q ss_pred -----------------------ccccccccc--ccc--chh---------------------HHHhhhCCCC-CCccCC
Q 003687 532 -----------------------CGLMVPAES--ASI--PYF---------------------DAIMLHMKSY-DSPADG 562 (803)
Q Consensus 532 -----------------------~G~~Vpa~~--a~i--~~~---------------------d~I~~~ig~~-d~l~~~ 562 (803)
...++++.. ..+ ... ..++..++.. +.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 012445432 111 011 1123333443 233445
Q ss_pred ccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 563 KSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 563 ~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
...+|.++++ ++.+.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.|+|++||+.+.+ ..+++...+..+
T Consensus 163 ~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 5667777765 55666778999999999999999998877775 77777777799999999999865 556554444444
Q ss_pred e
Q 003687 641 A 641 (803)
Q Consensus 641 ~ 641 (803)
.
T Consensus 242 ~ 242 (305)
T PRK13651 242 K 242 (305)
T ss_pred E
Confidence 3
No 175
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=175.11 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=102.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~---------------- 532 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..
T Consensus 12 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 12 QIKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eEEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36777887654 24579999998 8999999999999999999999975310 11
Q ss_pred -------cccccccccccc--hhHH---------------------HhhhCCCC----CCccCCccchHHHHHH-HHHHH
Q 003687 533 -------GLMVPAESASIP--YFDA---------------------IMLHMKSY----DSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 -------G~~Vpa~~a~i~--~~d~---------------------I~~~ig~~----d~l~~~~stfs~em~~-l~~iL 577 (803)
..|+|+....++ ..++ ++..++.. +........+|.++++ +..+.
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 123343321111 1111 11112221 1112233456666655 66667
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.+ .++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~-~~tiiivsH~~~~~~~~~d~i 223 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKK-DYTIVIVTHNMQQAARISDYT 223 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhh-CCEEEEEECCHHHHHHhCCEE
Confidence 778999999999999999999888886 66666654 79999999999876 445543
No 176
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.73 E-value=1.7e-17 Score=171.91 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=103.5
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------- 530 (803)
...+.+++++..|.. .++..++++++| |++++|+||||||||||+++|+|+....
T Consensus 9 ~~~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCC-CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 345778888766521 112469999998 8999999999999999999999986110
Q ss_pred hccccccccccccc--hhHHH------------------------hhhC--CCCCCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 ICGLMVPAESASIP--YFDAI------------------------MLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 q~G~~Vpa~~a~i~--~~d~I------------------------~~~i--g~~d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
....++++....++ ..+++ +..+ +...........++.++++ +..+.+.+.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 11123343321110 00111 1111 2222233334556766665 566667789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
+|+++||||||+|||+.....+. .++..+.+ +.++|++||++++...++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~d 216 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQ-QALYDWPE-RRTVLVIAHRLSTVERAD 216 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHcC-CCEEEEEECCHHHHHhCC
Confidence 99999999999999999888886 66666655 689999999998875443
No 177
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=169.88 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=101.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh------------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------ 528 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~------------------------ 528 (803)
.+.++++..+| +++.+++||++ +++++|+||+|||||||||++..+..
T Consensus 7 ~~~~~~l~~yY----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 7 AIEVRDLNLYY----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred eeEecceeEEE----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46777887665 57889999999 69999999999999999999998751
Q ss_pred ----hhhccccccccccccc--hhHHHhhhC---C----------------------CCCCccCCccchHHHHH-HHHHH
Q 003687 529 ----LGICGLMVPAESASIP--YFDAIMLHM---K----------------------SYDSPADGKSSFQVEMS-EIRSI 576 (803)
Q Consensus 529 ----laq~G~~Vpa~~a~i~--~~d~I~~~i---g----------------------~~d~l~~~~stfs~em~-~l~~i 576 (803)
..+.| .|++...-+| .++++..-. | +.|.+......+|++.+ ++..+
T Consensus 83 ~~~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 83 VVELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 11112 2333322222 222221100 1 11222222334555554 46677
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
.+.|.+|++||||||||+|||.....| ..++..|++ .-||+++||++..+..
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~-~yTIviVTHnmqQAaR 213 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKI-EELITELKK-KYTIVIVTHNMQQAAR 213 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHh-ccEEEEEeCCHHHHHH
Confidence 777999999999999999999998888 488888874 6899999999987653
No 178
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.6e-17 Score=173.50 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=101.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--h--hhcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--l--aq~G--------------- 533 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+.. . ...|
T Consensus 6 ~l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 6 KMEARGLSFFY----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred EEEEeeeEEEE----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 36778887665 24579999998 89999999999999999999999742 0 0111
Q ss_pred --------ccccccccccc--hhHHHh----------------------hhCCCCC----CccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~d----~l~~~~stfs~em~~-l~~i 576 (803)
.++|+....++ ..+++. ..++..+ ........+|.++++ +..+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 23343321111 111111 1112111 112234556777665 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.. .++++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKA-RYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCeEEEEEecHHHHHHhCCEE
Confidence 6778999999999999999999888886 66666654 78999999999876 445443
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.73 E-value=1.4e-17 Score=176.22 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=109.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-----------------hhh----
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------LGI---- 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-----------------laq---- 531 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.. +..
T Consensus 6 ~l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEc----CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 46778887655 23579999998 89999999999999999999999851 110
Q ss_pred --------cccccccccc--c---cchhH----------------------HHhhhCCCCC-CccCCccchHHHHHH-HH
Q 003687 532 --------CGLMVPAESA--S---IPYFD----------------------AIMLHMKSYD-SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 532 --------~G~~Vpa~~a--~---i~~~d----------------------~I~~~ig~~d-~l~~~~stfs~em~~-l~ 574 (803)
...++|+... . +...+ .++..++..+ ........+|.++++ +.
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 1234554431 0 01011 1222334332 233445667777665 56
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccccccccee
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
.+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.+. .+++...+.++.+
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 666778999999999999999999888876 55566544 4899999999998875 4554444444433
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=176.93 Aligned_cols=162 Identities=10% Similarity=0.064 Sum_probs=105.8
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
+.+++++..|.... ..+.+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 45667765542110 01468999998 8999999999999999999999985110
Q ss_pred --hccccccccc--ccc--chhHH---------------------HhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 --ICGLMVPAES--ASI--PYFDA---------------------IMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~--a~i--~~~d~---------------------I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
....|+|+.. ..+ ...++ ++..++..+ ........+|.++++ +..+.+.+.
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1123455442 111 11111 112233321 223344567777765 556667789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+|+++||||||+|||+.....+. .++..+.+.|.|+|++||+.+.+ .++++...+..+
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 163 EPKILVLDEPTAGLDPKGRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 99999999999999999888876 66666666689999999999876 345543333333
No 181
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.73 E-value=2.5e-17 Score=173.13 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=103.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----h-----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----I----------------- 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q----------------- 531 (803)
+.++|++..| ++..+++++|| |++++|+||||||||||+|+|+|+.... .
T Consensus 2 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 2 IEIENLNLFY----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred EEEEEEEEEE----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 4566776554 23568999998 8999999999999999999999986321 0
Q ss_pred -----ccccccccccccc--hhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-HHHHH
Q 003687 532 -----CGLMVPAESASIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 532 -----~G~~Vpa~~a~i~--~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l~~iL 577 (803)
...++|+....++ ..+++ +..++.. +........+|.++++ +..+.
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 0123333321111 11111 1122332 2223334566776665 55666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.+ ..+++...+.++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999888886 66667665 48999999999865 455544333333
No 182
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=2.8e-17 Score=173.76 Aligned_cols=159 Identities=11% Similarity=0.086 Sum_probs=106.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------h----------------h
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------G----------------I 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------a----------------q 531 (803)
+.++|++..| ++.+++++|| |++++|+||||||||||+|+|+|+... . .
T Consensus 5 l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 5 IELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 6778887654 3468999998 899999999999999999999998632 0 1
Q ss_pred cccccccccc-ccc-h---hH-------------------HHhhhCCCCC---CccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 532 CGLMVPAESA-SIP-Y---FD-------------------AIMLHMKSYD---SPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 532 ~G~~Vpa~~a-~i~-~---~d-------------------~I~~~ig~~d---~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
...+++++.. .+. . .+ .++..++..+ ........+|.++++ +..+.+.+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 1224444421 111 0 01 1122223222 123334567776665 66677778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.. ..+++...+.++.+
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999888876 66666644 589999999999876 34554433444433
No 183
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.4e-17 Score=171.70 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=97.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGL 534 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G~ 534 (803)
.+++++..| .+++.++++++| |++++|+||||||||||+|+|+|+.... +...
T Consensus 2 ~~~~l~~~~---~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 2 EFENVTFAY---DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred EEEEEEEEe---CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 345554433 223568999988 8999999999999999999999986211 1122
Q ss_pred cccccccccc--hhHHHh---------------hhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 535 MVPAESASIP--YFDAIM---------------LHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I~---------------~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
|+++....++ ..+++. ...+..+ ........+|.++++ +..+.+.+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3444322111 011110 0001100 011122356666555 6667777999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+||||||+|||+.....+. .++..+.+ |.++|++||+.+....+++
T Consensus 159 lllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~~d~ 204 (236)
T cd03253 159 LLLDEATSALDTHTEREIQ-AALRDVSK-GRTTIVIAHRLSTIVNADK 204 (236)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHHhCCE
Confidence 9999999999999888886 66666666 8999999999988765443
No 184
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.7e-17 Score=177.12 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=106.9
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
+.+++++..|.... .++.+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 56677766552111 12469999999 8999999999999999999999986110
Q ss_pred --hccccccccc--ccc--chhH---------------------HHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 --ICGLMVPAES--ASI--PYFD---------------------AIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~--a~i--~~~d---------------------~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
....++|+.. ..+ ...+ .++..++.. +........+|.++++ +..+.+.+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~ 162 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM 162 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 0123455532 111 0111 122233443 2233445667777665 555666789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNA 637 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v 637 (803)
+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+.+.+ ..+++...+
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999888886 77777754 589999999999875 455544333
No 185
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.5e-17 Score=173.60 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=108.2
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc-------------
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC------------- 532 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~------------- 532 (803)
+...+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+... ...
T Consensus 17 ~~~~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 17 EEIALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCeEEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34568888987765 34679999999 899999999999999999999998631 011
Q ss_pred ----------cccccccccccc--hhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-H
Q 003687 533 ----------GLMVPAESASIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-I 573 (803)
Q Consensus 533 ----------G~~Vpa~~a~i~--~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l 573 (803)
..++|+....++ ..+++ +..++.. +........++.++++ +
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 123343322111 11111 1111211 1122334567776665 5
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
..+.+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.. .++++...+..+.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGD 239 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 6666778999999999999999999888876 66666654 78999999999875 4555444443443
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-17 Score=177.92 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=105.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh---------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------- 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq--------------------- 531 (803)
.+.+++++..|. ...+.++++++| |++++|+||||||||||+|+|+|+.....
T Consensus 5 ~l~i~~l~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYP--DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcC--CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 467778876551 112468999998 89999999999999999999999863321
Q ss_pred --cccccccccc-cc---chhHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 532 --CGLMVPAESA-SI---PYFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 532 --~G~~Vpa~~a-~i---~~~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
...++++... .+ ...++ ++..++..+........+|.++++ +..+.+.+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1123333321 11 11111 122233333333344566766655 56666778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~ 634 (803)
+++||||||+|||+.....+. .+++.+.+ .|.++|++||++++...+++.
T Consensus 163 ~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~d~i 213 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQIL-KLIRKLKKKNNLTVISITHDIDEANMADQV 213 (282)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999888886 66666654 489999999999887655433
No 187
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.7e-17 Score=177.54 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=109.4
Q ss_pred EEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 478 LKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
+.+++++..|.... .+..+++|+|| |++++|+||||||||||+|+|+|+....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 56777776652111 12469999999 8999999999999999999999986211
Q ss_pred --hcccccccccc-cc---chhH---------------------HHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 --ICGLMVPAESA-SI---PYFD---------------------AIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 --q~G~~Vpa~~a-~i---~~~d---------------------~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
+...++++... .+ ...+ .++..++.. +........+|.++++ +..+.+.+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 11234554321 11 1111 122234443 2233445667777765 555666789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
+|+++||||||+|||+.....+. .++..+.+ .|.|||++||+.+.+ .++++...+..+.+
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999888886 66677754 589999999999876 45555444444433
No 188
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.73 E-value=2.2e-17 Score=170.82 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=102.2
Q ss_pred EEEecccccccccC-C--CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------
Q 003687 478 LKMNGLSPYWFDAA-E--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~-~--~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------- 530 (803)
+.++|++..|.... + ...++++++| |++++|+||||||||||+|+|+|+....
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 45667765552110 1 2478999998 8999999999999999999999986210
Q ss_pred --------hccccccccccccch---hH---------------------HHhhhCCCCCCc-cCCccchHHHHHH-HHHH
Q 003687 531 --------ICGLMVPAESASIPY---FD---------------------AIMLHMKSYDSP-ADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 531 --------q~G~~Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l-~~~~stfs~em~~-l~~i 576 (803)
....++++.....+. .+ .++..++..+.. ......++.++++ +..+
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 011234443221110 00 112223332221 2234456666655 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
.+.+.+|+++||||||+|+|+.....+. .+++.+++.|+++|++||+.+++. +++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 6678999999999999999999888886 666777767899999999998764 444
No 189
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.73 E-value=2.5e-17 Score=173.65 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=102.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.+.++|++..| ++..+++|++| |++++|+||||||||||+|+|+|+....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence 36777887655 23568999998 8999999999999999999999986110
Q ss_pred -------hccccccccccc-----cchhHH----------------------HhhhCCCCC-CccCCccchHHHHHH-HH
Q 003687 531 -------ICGLMVPAESAS-----IPYFDA----------------------IMLHMKSYD-SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 531 -------q~G~~Vpa~~a~-----i~~~d~----------------------I~~~ig~~d-~l~~~~stfs~em~~-l~ 574 (803)
+...++++.... +...++ ++..++..+ ........+|.++++ +.
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 001233333210 000111 122223321 223334556666655 66
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Ccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+.+.+|+++||||||+|||+.....+. .+++.+ .+.|.++|++||+.+... .+++.
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~ 219 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQRL 219 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 677779999999999999999999888887 555555 445899999999998765 44443
No 190
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.73 E-value=2.6e-17 Score=175.43 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=103.4
Q ss_pred eEEEecccccccccC-----CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----------------
Q 003687 477 CLKMNGLSPYWFDAA-----EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~-----~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------- 530 (803)
.++++|+++.|.... +++.+++++|| |++++|+||||||||||||+|+|+....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 467888877652110 13479999999 8999999999999999999999986110
Q ss_pred ---hcccccccccc--ccch---h----------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHHHH
Q 003687 531 ---ICGLMVPAESA--SIPY---F----------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 531 ---q~G~~Vpa~~a--~i~~---~----------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa 578 (803)
+...++|+... ..+. . ..++..++.. +......+.+|.++++ ++.+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 11223444321 0000 0 1122223331 1122233566766665 566667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+.+|+++||||||+|||+.....+. .++..+.+ .|.++|++||+.+... .+++
T Consensus 164 l~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tviivsH~~~~~~~~~d~ 219 (267)
T PRK15112 164 LILRPKVIIADEALASLDMSMRSQLI-NLMLELQEKQGISYIYVTQHLGMMKHISDQ 219 (267)
T ss_pred HHhCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhcCE
Confidence 78999999999999999998877776 66666654 5899999999998764 3443
No 191
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.5e-17 Score=176.31 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=103.4
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--h--hhc-------------
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GIC------------- 532 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--l--aq~------------- 532 (803)
+...+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+.. . ...
T Consensus 36 ~~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYY----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 45568888887665 24579999998 89999999999999999999999731 0 011
Q ss_pred ----------cccccccccccc--hhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-H
Q 003687 533 ----------GLMVPAESASIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-I 573 (803)
Q Consensus 533 ----------G~~Vpa~~a~i~--~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l 573 (803)
..+++++...++ ..+++ +..++.. +........+|.++++ +
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 123343322111 11111 1111211 1122334556666655 5
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
..+.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+... ++++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~-~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRG-SYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCEE
Confidence 5666778999999999999999999888876 66666655 589999999998763 44433
No 192
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.73 E-value=3.3e-17 Score=171.90 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-hhhcc-------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICG------------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-laq~G------------------- 533 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.. -...|
T Consensus 2 i~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 2 LSIKDLHVSV----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred eEEEEEEEEe----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 4567776554 24579999998 89999999999999999999999831 11111
Q ss_pred ---ccccccccccchhH-------------------------------HHhhhCCCCCC-ccCCc-cchHHHHHH-HHHH
Q 003687 534 ---LMVPAESASIPYFD-------------------------------AIMLHMKSYDS-PADGK-SSFQVEMSE-IRSI 576 (803)
Q Consensus 534 ---~~Vpa~~a~i~~~d-------------------------------~I~~~ig~~d~-l~~~~-stfs~em~~-l~~i 576 (803)
.++++....++... .++..++..+. ..... ..+|.++++ +..+
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 12232221111000 00011111100 11111 257777665 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+.+.|+|++||+.++...
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVA-DGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 6778999999999999999999888876 6777777778999999999987654
No 193
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.73 E-value=2.4e-17 Score=169.49 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=92.4
Q ss_pred ccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccccccccccc---hhHHH--
Q 003687 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YFDAI-- 549 (803)
Q Consensus 497 lndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~Vpa~~a~i~---~~d~I-- 549 (803)
+.++|| |++++|+||||||||||+|+|+|+.... ....++|+....++ ..+++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 457777 8999999999999999999999986210 11234454432221 11221
Q ss_pred -------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 003687 550 -------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 550 -------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe 609 (803)
+..++..+........++.++++ +..+.+.+.+|+++||||||+|+|+.....+. .+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~ 172 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML-ALVK 172 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHH
Confidence 22222222223334456666655 55666778999999999999999999888886 6666
Q ss_pred HHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 610 TLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 610 ~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.+.+ .+.|+|++||+.++. ..+++.
T Consensus 173 ~~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 173 QLCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred HHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 6654 589999999999875 345443
No 194
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.72 E-value=3.7e-17 Score=179.75 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=108.9
Q ss_pred eEEEecccccccccC---------CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------
Q 003687 477 CLKMNGLSPYWFDAA---------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~---------~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------- 529 (803)
.++++|++..|.... +...+++|+|| |++++|+|+||||||||+|+|+|+...
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 467888877653211 13578999999 899999999999999999999998611
Q ss_pred ---------hhccccccccc--cccc---hhHH-----------------------HhhhCCCCC-CccCCccchHHHHH
Q 003687 530 ---------GICGLMVPAES--ASIP---YFDA-----------------------IMLHMKSYD-SPADGKSSFQVEMS 571 (803)
Q Consensus 530 ---------aq~G~~Vpa~~--a~i~---~~d~-----------------------I~~~ig~~d-~l~~~~stfs~em~ 571 (803)
.....++++.. ...+ ..++ ++..++..+ ........+|.+|+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~ 167 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQC 167 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHH
Confidence 01123455543 1111 1111 122223311 22334456777777
Q ss_pred H-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccc
Q 003687 572 E-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIK 635 (803)
Q Consensus 572 ~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~ 635 (803)
+ +..+.+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++||+|||++++. ++++..
T Consensus 168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVV-NLLQQLQREMGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 6 66677789999999999999999999988887 66666654 5899999999999875 455443
No 195
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=9.5e-18 Score=171.27 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=99.7
Q ss_pred EEecccccccccCCC----ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----c--ccccccccccc
Q 003687 479 KMNGLSPYWFDAAEG----SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C--GLMVPAESASI 543 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~----~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~--G~~Vpa~~a~i 543 (803)
+++|++..| .+. +.+++++|| |++++|+||||||||||+|+|+|+..... . ..++|+....+
T Consensus 2 ~~~~l~~~~---~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~ 78 (204)
T cd03250 2 SVEDASFTW---DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ 78 (204)
T ss_pred EEeEEEEec---CCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc
Confidence 456665554 122 369999998 89999999999999999999999862211 1 13455443211
Q ss_pred --chhHHHh--------------hhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 003687 544 --PYFDAIM--------------LHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 544 --~~~d~I~--------------~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGL 595 (803)
...+++. ..++..+ ........++.++++ +..+.+.+.+|+++|+|||++||
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 1111111 1111111 111223456666655 66666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
|+.....+...+++.+.+.|.++|++||+.+....+
T Consensus 159 D~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~ 194 (204)
T cd03250 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA 194 (204)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhC
Confidence 998888887556666655689999999999877643
No 196
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.72 E-value=2.7e-17 Score=170.72 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=96.0
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---hhh-----------------ccccccccccccc---h
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LGI-----------------CGLMVPAESASIP---Y 545 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---laq-----------------~G~~Vpa~~a~i~---~ 545 (803)
.+.++++++| |++++|+||||||||||+|+|+|+.. ... ...++|+....++ .
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 3678999998 89999999999999999999999864 211 1123444332221 1
Q ss_pred hHHHh-------------------------hhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 546 FDAIM-------------------------LHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 546 ~d~I~-------------------------~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
.+++. ..++..+........++.++++ +..+.+.+.+|+++|||||++|||+..
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 11111 1111111112223456666554 566677789999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccCh--hhhhCccccccc
Q 003687 600 GTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNA 637 (803)
Q Consensus 600 g~~L~~~ILe~L~~~g~tvI~sTH~~--eL~~~~~~~~~v 637 (803)
...+. .++..+.+.|.++|++||+. ++...+++...+
T Consensus 179 ~~~~~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 179 ALNLV-STLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred HHHHH-HHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 88886 66666666689999999997 455666544333
No 197
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2.3e-17 Score=167.52 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=98.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----c-----------ccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C-----------GLMVP 537 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~-----------G~~Vp 537 (803)
+.+++++..| +++.+++ ++| |++++|+||||||||||+|+|+|+..... . ..+++
T Consensus 2 l~~~~l~~~~----~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (195)
T PRK13541 2 LSLHQLQFNI----EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG 76 (195)
T ss_pred eEEEEeeEEE----CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEecc
Confidence 4556666554 2344554 887 89999999999999999999999852110 0 12333
Q ss_pred cccccc---chhH----------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 538 AESASI---PYFD----------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 538 a~~a~i---~~~d----------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
+....+ ...+ .++..++..+........++.++++ +..+.+.+.+|+++|+||||+|+|+
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 322111 1111 1222333333334445567776665 5566677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
.....+. .+++...+.+.++|++||+.+....+
T Consensus 157 ~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 157 ENRDLLN-NLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEEeCCccccchh
Confidence 9877775 66665666789999999998876554
No 198
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.72 E-value=2.2e-17 Score=172.13 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=93.3
Q ss_pred cccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----c----------cccccccccccc---hhHH-------
Q 003687 498 NTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----C----------GLMVPAESASIP---YFDA------- 548 (803)
Q Consensus 498 ndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~----------G~~Vpa~~a~i~---~~d~------- 548 (803)
+++|| |++++|+||||||||||+|+|+|+..... . ..++++....++ ..+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 44555 89999999999999999999999862110 0 124444332111 1121
Q ss_pred ----------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 003687 549 ----------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 549 ----------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L 611 (803)
++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~ 160 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELMQI 160 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHH
Confidence 122223322233344566777665 55666778999999999999999999888886 555555
Q ss_pred H-hcCCEEEEEccChhhh-hCcccccccccc
Q 003687 612 D-NIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 612 ~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
. +.|.++|++||+.+.. ..+++...+.++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 4 4589999999999865 445544333333
No 199
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.2e-17 Score=180.02 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=110.7
Q ss_pred eEEEecccccccccC------CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------
Q 003687 477 CLKMNGLSPYWFDAA------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~------~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------- 529 (803)
.++++|++..|.... +...+++|||| |++++|+|+||||||||+|+|+|+...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 467888876653211 12578999999 899999999999999999999998611
Q ss_pred ------hhcccccccccc--ccc---hh----------------------HHHhhhCCCCC-CccCCccchHHHHHH-HH
Q 003687 530 ------GICGLMVPAESA--SIP---YF----------------------DAIMLHMKSYD-SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 530 ------aq~G~~Vpa~~a--~i~---~~----------------------d~I~~~ig~~d-~l~~~~stfs~em~~-l~ 574 (803)
.....++++... ..+ .. ..++..++..+ ........+|.++++ +.
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~ 164 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA 164 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH
Confidence 011234554421 111 00 11223333321 223445677887766 66
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+.+.+.+|++||+||||++||+.....+. .++..+. +.|.++|++|||++++. ++++...+..+
T Consensus 165 iArAL~~~P~lLilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G 231 (327)
T PRK11308 165 IARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG 231 (327)
T ss_pred HHHHHHcCCCEEEEECCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 677789999999999999999999988887 5565664 45999999999999875 45544333333
No 200
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.1e-17 Score=171.12 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=102.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--hh--hc-----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--IC----------------- 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--la--q~----------------- 532 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.- .. ..
T Consensus 4 l~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 4 IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEE----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5677776654 24578999998 89999999999999999999998621 10 01
Q ss_pred ------cccccccccccc--hhHHH----------------------hhhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 533 ------GLMVPAESASIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ------G~~Vpa~~a~i~--~~d~I----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
..|+|+....++ ..+++ +..++..+ ........+|.++++ +..+.
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 123343321111 11111 11122211 112223456666655 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ ++++|++||+.+.. ..+++...+..+.
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 778999999999999999999888886 66666654 78999999999875 4555444444443
No 201
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.9e-17 Score=170.23 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=103.4
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccc
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMV 536 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~V 536 (803)
.+++++..| +++.++++++| |++++|+||||+|||||+|+|+|+.... ..-.++
T Consensus 2 ~~~~l~~~~----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 2 ELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred EEEeEEEEe----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 355665444 24579999998 8999999999999999999999996211 111234
Q ss_pred cccccccc---hhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 003687 537 PAESASIP---YFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 591 (803)
Q Consensus 537 pa~~a~i~---~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP 591 (803)
+++...++ ..+ .++..++..+........++.++++ +..+.+.+.+|+++|||||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44322211 111 1223334443344444566766655 6667777999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccc
Q 003687 592 CRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
++|||+.....+. .+++.+.+ .|.|+|++||+.+.. ..+++.
T Consensus 158 ~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i 201 (232)
T cd03300 158 LGALDLKLRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMSDRI 201 (232)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 9999999888886 66666665 489999999999875 445543
No 202
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=170.79 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=101.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G---------------- 533 (803)
+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 4 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred EEEEeeEEEE----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 5677776554 24579999998 8999999999999999999999985310 111
Q ss_pred -----cccccccccc---chhHHH-----------------------hhhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 534 -----LMVPAESASI---PYFDAI-----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 534 -----~~Vpa~~a~i---~~~d~I-----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
.++|+....+ ...+++ +..++..+ ........+|.++++ +..+.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 2334332211 111222 11112211 122334566777665 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. ..+++.
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIE-SLFLELKK-DMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence 778999999999999999999888886 66666654 79999999999875 345543
No 203
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.72 E-value=4.2e-17 Score=171.66 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=100.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-hhhcc------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICG------------------ 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-laq~G------------------ 533 (803)
.+.++++...| +++.++++++| |++++|+||||||||||+|+|+|+.. -...|
T Consensus 7 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred eEEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 47778887655 24579999998 89999999999999999999999721 01111
Q ss_pred ----ccccccccccc---hhH----------------------------HHhhhCCCCC-CccCCcc-chHHHHHH-HHH
Q 003687 534 ----LMVPAESASIP---YFD----------------------------AIMLHMKSYD-SPADGKS-SFQVEMSE-IRS 575 (803)
Q Consensus 534 ----~~Vpa~~a~i~---~~d----------------------------~I~~~ig~~d-~l~~~~s-tfs~em~~-l~~ 575 (803)
.++++....++ ..+ .++..++..+ ....... .+|.++++ +..
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 12222211111 001 1122222221 1222222 36766665 566
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+.+.+.+|+++||||||+|||+.....+. .++..+.+.|.|+|++||+.++...
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHh
Confidence 67778999999999999999999888886 6666676678999999999987653
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=4.4e-17 Score=173.86 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred EEEeccccccccc-----CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------
Q 003687 478 LKMNGLSPYWFDA-----AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------- 529 (803)
Q Consensus 478 i~l~~l~p~~~~~-----~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------- 529 (803)
+.++|++..|... ..++.+++|+|| |++++|+||||||||||+|+|+|+...
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 5667776655210 013679999999 899999999999999999999998511
Q ss_pred ----hhcccccccccc-cc----chh----------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 530 ----GICGLMVPAESA-SI----PYF----------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 530 ----aq~G~~Vpa~~a-~i----~~~----------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
.....++++... .+ ... ..++..++.. +........++.++++ +..+
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 011223444321 01 001 1122233332 2233344556766655 6667
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAY 639 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~ 639 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ .+.++|++||+.+... ++++.-.+..
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 227 (268)
T PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227 (268)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 7779999999999999999999888776 66666654 4899999999998764 4554433333
No 205
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.4e-17 Score=175.51 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=104.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhcc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICG 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G 533 (803)
+.++|++..|.. .....++++++| |++++|+||||||||||+++|+|+... .+..
T Consensus 5 l~~~~l~~~~~~-~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 5 LEVENLVFKYEK-ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEEEcCC-CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 567777665521 112468999998 899999999999999999999998621 0112
Q ss_pred cccccccc-cc---chhHHH---------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 534 LMVPAESA-SI---PYFDAI---------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 534 ~~Vpa~~a-~i---~~~d~I---------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
.++++... .+ ...+++ +..++..+........++.++++ +..+.+.+.+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 24444321 11 111111 11222222223334566777665 555666789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCcccc
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~ 634 (803)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+.+.+..+++.
T Consensus 164 lDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i 210 (277)
T PRK13642 164 LDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRI 210 (277)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 99999999999988887 66666765 489999999999987654443
No 206
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.7e-17 Score=172.55 Aligned_cols=153 Identities=19% Similarity=0.261 Sum_probs=101.7
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc--------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG-------------- 533 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G-------------- 533 (803)
..+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ...|
T Consensus 12 ~~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEe----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457888887665 24579999998 899999999999999999999998530 0111
Q ss_pred ---------ccccccccccc--hhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-HHH
Q 003687 534 ---------LMVPAESASIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 534 ---------~~Vpa~~a~i~--~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l~~ 575 (803)
.++++....++ ..+++ +..++.. +........+|.++++ +..
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 13333321111 11111 1111111 1112233456666655 566
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.|+|++||+.+.. .++++.
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiii~sH~~~~~~~~~d~i 225 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQ-DYTVVIVTHNMQQAARCSDYT 225 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCEE
Confidence 66778999999999999999999888776 66666654 78999999999876 345443
No 207
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=1.4e-17 Score=171.41 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=114.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hccccc---ccc-----
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMV---PAE----- 539 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G~~V---pa~----- 539 (803)
.+++++++-.| +...++.++|| |++++|+||||+||||+||+|+|++-.. ..|..+ |.+
T Consensus 3 mL~v~~l~~~Y----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeecc----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 36778887666 45789999999 8999999999999999999999997221 112211 111
Q ss_pred -ccccchhHHHhhhCCCCCCccCC-------------------------------ccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 540 -SASIPYFDAIMLHMKSYDSPADG-------------------------------KSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 540 -~a~i~~~d~I~~~ig~~d~l~~~-------------------------------~stfs~em~~-l~~iLa~a~~psLl 586 (803)
.+++|+-.++|.++++.||+..+ ..++|.+.+| ++.+.+.+.+|+++
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 13455555666666665555322 1234444444 55666778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-CcccccccccceeE
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
|||||+.||.|.-...|. .+++.+++ .|.||+++-++...+. .+++...+.++.+.
T Consensus 159 LLDEPs~GLaP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred EecCCccCcCHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 999999999999988887 77777764 4789999999988764 55554444454443
No 208
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=171.30 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=101.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 7 IIETENLNLFY----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred eEEEeeeEEEe----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 47788887665 24579999998 8999999999999999999999986421 011
Q ss_pred --------cccccccccc--chhHHHh----------------------hhCCC----CCCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASI--PYFDAIM----------------------LHMKS----YDSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I~----------------------~~ig~----~d~l~~~~stfs~em~~-l~~i 576 (803)
.+++++...+ ...+++. ..++. .+........++.++++ +..+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 1233322111 1112111 00111 01112223456666655 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.+.+.+|+++||||||+|||+.....+. .++..+++ +.++|++||+.+.+ ..+++.
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKE-SYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 6678999999999999999999888886 66666654 78999999999875 344443
No 209
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=2.6e-17 Score=173.78 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=89.0
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh--------hcccccccccccc---chh-----------------HHHhhhCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG--------ICGLMVPAESASI---PYF-----------------DAIMLHMK 554 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la--------q~G~~Vpa~~a~i---~~~-----------------d~I~~~ig 554 (803)
|++++|+||||||||||+|+|+|+.... ....++|+..... ... ..++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 7999999999999999999999986211 1123455442211 111 11233344
Q ss_pred CCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh
Q 003687 555 SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 555 ~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~ 629 (803)
..+........+|.++++ ++.+.+.+.+|+++||||||++||+.....+. .++..+. +.+.++|++||+.+++.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 433334445667776665 66677789999999999999999999988886 5566654 45899999999998765
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.7e-17 Score=188.84 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=108.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------IC 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~ 532 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... +.
T Consensus 5 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 5 LSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred EEEeeeEEEE----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 6677877655 24579999999 8999999999999999999999986110 11
Q ss_pred ccccccccccc---chhHH------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 533 GLMVPAESASI---PYFDA------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i---~~~d~------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
..|+|+....+ ...++ ++..++..+........+|.++++ +..+.+.+.+|+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 12444432111 11111 222333333334445677777766 556667789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
++||||||+|||+.....+. .++..+.+.|.++|++||+.+.+. ++++...+..+
T Consensus 161 lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999888886 667777777999999999998764 45544333333
No 211
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.9e-17 Score=169.46 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=99.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--hhcc------ccccc------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICG------LMVPA------ 538 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--aq~G------~~Vpa------ 538 (803)
.+.++|+...|....+++.++++++| |++++|+||||||||||+++|+|+... ...| ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 35677777666443356789999998 899999999999999999999998641 1112 11100
Q ss_pred -cccccchhHHHhhhCCCCCC--------ccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 003687 539 -ESASIPYFDAIMLHMKSYDS--------PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 539 -~~a~i~~~d~I~~~ig~~d~--------l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~IL 608 (803)
..+++++...++..+++.++ .......++.++++ +..+.+.+.+|+++||||||+|+|+.....+. .++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l 161 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCI 161 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHH
Confidence 01112221112222222222 22233456666655 66777789999999999999999999888886 666
Q ss_pred HHHHhc-CCEEEEE-ccChh-hhhCcccc
Q 003687 609 ETLDNI-GCLGIVS-THLHG-IFSLPLKI 634 (803)
Q Consensus 609 e~L~~~-g~tvI~s-TH~~e-L~~~~~~~ 634 (803)
+.+.+. +.++|++ +|+.+ +...+++.
T Consensus 162 ~~~~~~~~~t~ii~~~h~~~~~~~~~d~i 190 (202)
T cd03233 162 RTMADVLKTTTFVSLYQASDEIYDLFDKV 190 (202)
T ss_pred HHHHHhCCCEEEEEEcCCHHHHHHhCCeE
Confidence 666544 6666655 55544 34555543
No 212
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6.1e-17 Score=172.43 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=102.8
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-h---hhc--------------
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-L---GIC-------------- 532 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-l---aq~-------------- 532 (803)
.+.+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+.. . ...
T Consensus 19 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEe----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457888887665 24679999998 89999999999999999999999742 0 011
Q ss_pred ---------cccccccccccc--hhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HH
Q 003687 533 ---------GLMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 533 ---------G~~Vpa~~a~i~--~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~ 574 (803)
..|+++....++ ..+++. ..++.. +........+|.++++ +.
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 123333322111 111111 111111 0112234456666665 55
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.+.+.+.+|+++||||||+|||+.....+. .++..+.+ +.|+|++||+.+.+ ..+++.
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKE-EYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhc-CCEEEEEEeCHHHHHHhCCEE
Confidence 666778999999999999999999888886 66666655 68999999999865 345443
No 213
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.5e-17 Score=172.38 Aligned_cols=151 Identities=16% Similarity=0.298 Sum_probs=102.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G--------------- 533 (803)
.+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ...|
T Consensus 19 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 19 KMRARDVSVFY----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred eEEEEeEEEEE----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 57788887765 24679999998 899999999999999999999998631 0111
Q ss_pred --------ccccccccccc--hhHHH-----------------------hhhCCCCC----CccCCccchHHHHHH-HHH
Q 003687 534 --------LMVPAESASIP--YFDAI-----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I-----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~ 575 (803)
.++++....++ ..+++ +..++..+ ........++.++++ +..
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 23333321111 11111 11122211 112233456666655 666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.|+|++||+.+.+. .+++
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~-~~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQ-NYTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhc-CCeEEEEEcCHHHHHhhCCE
Confidence 77778999999999999999999888876 66677765 689999999998763 3443
No 214
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.1e-17 Score=169.26 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=96.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hcccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLM 535 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~ 535 (803)
+.+++++..|. +.. .++|| |++++|+||||||||||+|+|+|+.... ....+
T Consensus 2 l~~~~l~~~~~----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYH----HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEEC----Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEE
Confidence 45666665541 122 26666 8999999999999999999999986210 11224
Q ss_pred ccccccccc---hhHHH---------------------hhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeC
Q 003687 536 VPAESASIP---YFDAI---------------------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 Vpa~~a~i~---~~d~I---------------------~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDE 590 (803)
+|+....++ ..+++ +..++..+........+|.++++ +..+.+.+.+|+++||||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444332211 11222 11222222222333456666655 555667789999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccc
Q 003687 591 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
||+|||+.....+. .+++.+. +.|.|+|++||+.++.. .+++
T Consensus 156 P~~gLD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 156 PFSALDPALRQEML-TLVSQVCQERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 99999999888886 6666654 45899999999998753 4443
No 215
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.7e-17 Score=170.30 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=110.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hcc---------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG--------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G--------------- 533 (803)
+.++|++..|-....-..++|+||| |++++|+|++|||||||.|+|+|+.... ..|
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 5677887766322222269999999 8999999999999999999999997211 112
Q ss_pred -ccccccc-ccc-c---h-------------------hHHHhhhCCCCCCcc-CCccchHHHH-HHHHHHHHhCCCCcEE
Q 003687 534 -LMVPAES-ASI-P---Y-------------------FDAIMLHMKSYDSPA-DGKSSFQVEM-SEIRSIVTATTSRSLV 586 (803)
Q Consensus 534 -~~Vpa~~-a~i-~---~-------------------~d~I~~~ig~~d~l~-~~~stfs~em-~~l~~iLa~a~~psLl 586 (803)
.+|+++. ..+ | . ...++..++...+.. .....+|++. ++++.+.+.+.+|+++
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklL 163 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL 163 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEE
Confidence 1233322 111 1 0 122334444443332 3345566654 5578888889999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhC-ccccccccccee
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAM 642 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~~-~~~~~~v~~~~m 642 (803)
|+|||||+||+.....+. .++..+ ++.+.|.||+|||..++.+ +++...+.++.+
T Consensus 164 IlDEptSaLD~siQa~Il-nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 164 ILDEPTSALDVSVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred EecCchhhhcHHHHHHHH-HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE
Confidence 999999999999988886 666666 5678999999999998764 444433344433
No 216
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.8e-17 Score=175.30 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=106.2
Q ss_pred ceEEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------
Q 003687 476 NCLKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------- 530 (803)
..+.++|++..|.... ....+++++|| |++++|+||||||||||+|+|+|+....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3478888876652110 01359999998 8999999999999999999999986210
Q ss_pred -----hcccccccccc--cc--chhHH---------------------HhhhCCCC-CCccCCccchHHHHHH-HHHHHH
Q 003687 531 -----ICGLMVPAESA--SI--PYFDA---------------------IMLHMKSY-DSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 531 -----q~G~~Vpa~~a--~i--~~~d~---------------------I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa 578 (803)
....++++... .+ ...++ ++..++.. +........+|.++++ +..+.+
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 01123444321 11 01111 11222221 1223334567777665 566667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+|+++||||||+|||+.....+. .+++.+.+ .|+++|++||+.+.+ ..+++...+..+
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999888776 66666654 589999999999865 445544333333
No 217
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.71 E-value=5.6e-17 Score=178.29 Aligned_cols=163 Identities=14% Similarity=0.113 Sum_probs=110.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.++++|++..|....+...+++++|| |++++|+|+||||||||+|+|+|+.-..
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 47888888766322233579999999 8999999999999999999999986321
Q ss_pred -----hccccccccc--cccc---hhHH----------------------HhhhCCCCC---CccCCccchHHHHHH-HH
Q 003687 531 -----ICGLMVPAES--ASIP---YFDA----------------------IMLHMKSYD---SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 531 -----q~G~~Vpa~~--a~i~---~~d~----------------------I~~~ig~~d---~l~~~~stfs~em~~-l~ 574 (803)
....++++.. +..+ ..++ ++..++..+ .+......+|.++++ +.
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM 171 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence 0122444443 1111 1111 122222221 112344567777766 66
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+.+.+.+|+|||+||||+|||+.....+. .+++.+.+ .|.++||+|||++++. ++++...+..+
T Consensus 172 IArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G 238 (330)
T PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238 (330)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 677779999999999999999999998887 66666654 5899999999999874 55544333333
No 218
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.71 E-value=3.3e-17 Score=183.10 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=103.9
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------------hcccccccc
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------------ICGLMVPAE 539 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----------------------------q~G~~Vpa~ 539 (803)
+...+++|+|| |++++|+||||||||||+|+|+|+.... +...++++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 45678899998 8999999999999999999999986210 112344444
Q ss_pred ccccch---hHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 003687 540 SASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 540 ~a~i~~---~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sG 594 (803)
...++. .++ ++..++..+........+|.++++ +..+.+.+.+|+++||||||+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~ 194 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSA 194 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 433321 111 222334433334445567777776 5556677899999999999999
Q ss_pred CChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhh-hCccccccccccee
Q 003687 595 TETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
||+.....+. .++..+. +.+.|+||+||+++++ .++++...+.++.+
T Consensus 195 LD~~~r~~l~-~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 195 LDPLIRTQLQ-DELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999887 4444554 4589999999999875 55665544444443
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.71 E-value=4.6e-17 Score=187.95 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=107.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-hc--------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-IC-------------------- 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-q~-------------------- 532 (803)
++++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..
T Consensus 2 l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 2 LEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred EEEEeEEEEe----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 4667776655 24679999998 8999999999999999999999986320 11
Q ss_pred --ccccccccccc---chhHH-------------------------HhhhCCCCCCc-cCCccchHHHHHH-HHHHHHhC
Q 003687 533 --GLMVPAESASI---PYFDA-------------------------IMLHMKSYDSP-ADGKSSFQVEMSE-IRSIVTAT 580 (803)
Q Consensus 533 --G~~Vpa~~a~i---~~~d~-------------------------I~~~ig~~d~l-~~~~stfs~em~~-l~~iLa~a 580 (803)
..++|+....+ ...+. ++..++..+.. .....++|.++++ +..+.+.+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 12344432111 11111 12222332221 2234577877766 55666778
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+.+. .+++...+..+
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G 217 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence 999999999999999999888886 677777777999999999998764 45544333333
No 220
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.3e-17 Score=177.22 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=110.5
Q ss_pred cceEEEecccccccccC-CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------h------
Q 003687 475 ANCLKMNGLSPYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------I------ 531 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~-~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------q------ 531 (803)
...+.+++++..|.... .+..+++++|| |++++|+||||||||||+|+|+|+.... .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34588899887662111 12469999999 8999999999999999999999986210 0
Q ss_pred ------------------ccccccccc--ccc--chhHH---------------------HhhhCCCC-CCccCCccchH
Q 003687 532 ------------------CGLMVPAES--ASI--PYFDA---------------------IMLHMKSY-DSPADGKSSFQ 567 (803)
Q Consensus 532 ------------------~G~~Vpa~~--a~i--~~~d~---------------------I~~~ig~~-d~l~~~~stfs 567 (803)
...++++.. ..+ ...++ ++..++.. +........+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 012334332 111 11111 12223332 12333345667
Q ss_pred HHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 568 VEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 568 ~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
.++++ ++.+.+.+.+|+++||||||+|||+.....+. .++..+.++|.|+|++||+++.+ ..+++...+..+.
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 66655 66667778999999999999999999888886 67777766799999999999865 5565544333333
No 221
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.71 E-value=3.3e-17 Score=174.79 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=96.5
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cc--cccccccc---ccchhHH---------
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--LMVPAESA---SIPYFDA--------- 548 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G--~~Vpa~~a---~i~~~d~--------- 548 (803)
....++++++| |++++|+||||||||||+++|+|+..... .| .++++... .+...+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 45678999998 89999999999999999999999863211 11 11111111 0111111
Q ss_pred ------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 003687 549 ------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 615 (803)
Q Consensus 549 ------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g 615 (803)
++..++..+.+......+|.++++ +..+.+.+.+|+++|||||++|||+.....+. .++..+.+.|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQN 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCC
Confidence 122223333344445667776655 66677778999999999999999998888776 5666666679
Q ss_pred CEEEEEccChhhhh-Cccc
Q 003687 616 CLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 616 ~tvI~sTH~~eL~~-~~~~ 633 (803)
.++|++||+.+.+. .+++
T Consensus 194 ~tiIiisH~~~~i~~~~d~ 212 (264)
T PRK13546 194 KTIFFVSHNLGQVRQFCTK 212 (264)
T ss_pred CEEEEEcCCHHHHHHHcCE
Confidence 99999999988753 3443
No 222
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=9.6e-17 Score=185.67 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=108.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-h---------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-G--------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-a--------------------- 530 (803)
.+.+++++..|.. .+++.+++|+|| |++++|+||||||||||+|+|+|+... .
T Consensus 259 ~l~~~~l~~~~~~-~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPV-NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCcccccc-ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4788898866511 124568999998 899999999999999999999998521 0
Q ss_pred hcccccccccc---cc---chhH--------------------------HHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 531 ICGLMVPAESA---SI---PYFD--------------------------AIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 531 q~G~~Vpa~~a---~i---~~~d--------------------------~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
..-.|+++... .+ ...+ .++..++.. +.......++|.++++ +..+
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 01234444310 11 1111 122333332 2334445677877776 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+++.|.|+|++||+.+.+. ++++.
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v 475 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIY-KLINQLVQQGVAIIVISSELPEVLGLSDRV 475 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCEE
Confidence 6778999999999999999999888886 777778777999999999998764 45543
No 223
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.1e-17 Score=169.74 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=100.1
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--h---------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--G--------------------- 530 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--a--------------------- 530 (803)
+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+... .
T Consensus 3 ~~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 3 AKTTNLNLFY----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred eeeeeeEEEE----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4566776655 24679999998 899999999999999999999997410 0
Q ss_pred hccccccccccccc--hhHH-----------------------HhhhCCCCC----CccCCccchHHHHHH-HHHHHHhC
Q 003687 531 ICGLMVPAESASIP--YFDA-----------------------IMLHMKSYD----SPADGKSSFQVEMSE-IRSIVTAT 580 (803)
Q Consensus 531 q~G~~Vpa~~a~i~--~~d~-----------------------I~~~ig~~d----~l~~~~stfs~em~~-l~~iLa~a 580 (803)
....++|+....++ ..++ ++..++..+ ........++.++++ ++.+.+.+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 01123444322111 1111 122222211 112233456666655 55666778
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+.+... .+++.
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i 211 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIE-ELLKELSH-NLSMIMVTHNMQQGKRVADYT 211 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHHhhCcEE
Confidence 999999999999999999888776 56666654 899999999998653 44443
No 224
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.71 E-value=6.8e-17 Score=173.05 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=98.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------hcc-------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICG------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------q~G------------- 533 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 2 l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVAR----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEE----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 4566776554 34679999998 8999999999999999999999986321 011
Q ss_pred --------ccccccccc---cchhHHHh-------------------------hhCCCCCCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESAS---IPYFDAIM-------------------------LHMKSYDSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~---i~~~d~I~-------------------------~~ig~~d~l~~~~stfs~em~~-l~~i 576 (803)
.++|+.... ....+++. ..++..+......+++|.++++ +..+
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 233333211 11112211 1112211122234556666665 4445
Q ss_pred HHhC---------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-CCEEEEEccChhhhh-Ccc
Q 003687 577 VTAT---------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 577 La~a---------~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g~tvI~sTH~~eL~~-~~~ 632 (803)
.+.+ .+|+++||||||+|||+.....+. .+++.+.+. |.++|++||+.+... +++
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 5556 499999999999999999988887 666666554 899999999998763 444
No 225
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.9e-17 Score=169.13 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=103.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--hh--hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG--IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--la--q~---------------- 532 (803)
.+.++|++..| +++.+++|++| |++++|+||||||||||+|+|+|+.. .. ..
T Consensus 4 ~l~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHF----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEe----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 47788887665 24579999998 89999999999999999999999852 10 01
Q ss_pred -------cccccccccccc---hhHHH----------------------hhhCCCCC----CccCCccchHHHHHH-HHH
Q 003687 533 -------GLMVPAESASIP---YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 533 -------G~~Vpa~~a~i~---~~d~I----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~ 575 (803)
..++|+....++ ..+++ +..++... ........++.++++ +..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 123444322111 11111 11122111 111223456666655 555
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~ 639 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.++|++||+.+.. ..+++...+..
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 66678999999999999999999888886 66777765 58999999999876 45554433333
No 226
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=4.8e-17 Score=163.89 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=82.4
Q ss_pred Cceecccc-CC--CceEEEEecCCCChhHHHHHHHhhHhhhhcccc-cccc-ccccchhHHHhhhCCCCCCccCCccchH
Q 003687 493 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-VPAE-SASIPYFDAIMLHMKSYDSPADGKSSFQ 567 (803)
Q Consensus 493 ~~~VlndI-sL--Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~-Vpa~-~a~i~~~d~I~~~ig~~d~l~~~~stfs 567 (803)
++.+++++ ++ |++++|+||||||||||+|+|+|+.... .|.. +... .+++++ .. .++
T Consensus 12 ~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q------------~~-----~LS 73 (177)
T cd03222 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQ------------YI-----DLS 73 (177)
T ss_pred CEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcc------------cC-----CCC
Confidence 34556653 22 8999999999999999999999985321 1211 1110 011111 00 166
Q ss_pred HHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhh
Q 003687 568 VEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 629 (803)
Q Consensus 568 ~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g-~tvI~sTH~~eL~~ 629 (803)
.++++ +..+.+.+.+|+++||||||+|+|+.....+. .+++.+.+++ .++|++||+.+...
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66655 56666778999999999999999999888887 5555555554 89999999998765
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.8e-17 Score=187.44 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=102.2
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------------------hcccccccccccc---c
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGLMVPAESASI---P 544 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------q~G~~Vpa~~a~i---~ 544 (803)
++.+++++|| |++++|+||||||||||+|+|+|+.... +.-.++|+....+ .
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4578999998 8999999999999999999999986110 1112444432111 1
Q ss_pred hhHH------------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 545 YFDA------------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 545 ~~d~------------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
..++ ++..++...........+|.++++ +..+.+.+.+|+++||||||+|||+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 1111 222233333333445667777766 555667789999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccce
Q 003687 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 641 (803)
Q Consensus 600 g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~ 641 (803)
...+. .+++.+.+.|.++|++||+.+.+. .+++...+..+.
T Consensus 170 ~~~l~-~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~ 211 (491)
T PRK10982 170 VNHLF-TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211 (491)
T ss_pred HHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88886 677777777999999999998764 455444444443
No 228
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.71 E-value=3.4e-17 Score=159.25 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=86.1
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCC
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK 554 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig 554 (803)
.+++++..| ++..++++++| |++++|+||||+|||||+++|+|+........++... ..+.+.
T Consensus 2 ~~~~l~~~~----~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~-------- 68 (144)
T cd03221 2 ELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYF-------- 68 (144)
T ss_pred EEEEEEEEE----CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEE--------
Confidence 345555443 23468899888 8999999999999999999999975322111111110 001110
Q ss_pred CCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 555 SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 555 ~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
..++.++++ +..+.+.+.+|+++|+|||++|+|+.....+. .+++.+ +.++|++||+.+...
T Consensus 69 ---------~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 69 ---------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred ---------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEEECCHHHHH
Confidence 015555554 66677778999999999999999999877775 455444 579999999998764
No 229
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=6.1e-17 Score=187.82 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=102.5
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-hhhc---------------------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGIC--------------------- 532 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-laq~--------------------- 532 (803)
.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+.. ....
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 2 EVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred EEEEEEEEE----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 456666544 24679999998 89999999999999999999999841 0000
Q ss_pred ---------------------------------ccccccc-ccccc---hhHH---------------------HhhhCC
Q 003687 533 ---------------------------------GLMVPAE-SASIP---YFDA---------------------IMLHMK 554 (803)
Q Consensus 533 ---------------------------------G~~Vpa~-~a~i~---~~d~---------------------I~~~ig 554 (803)
..++++. ...++ ..+. ++..++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1223332 11111 1111 222233
Q ss_pred CCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Cc
Q 003687 555 SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LP 631 (803)
Q Consensus 555 ~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~ 631 (803)
..+.......++|.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+ ++.|.+||++||+.+.+. .+
T Consensus 158 l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 333333445677777766 56667778999999999999999999888887 666666 456899999999998764 45
Q ss_pred ccc
Q 003687 632 LKI 634 (803)
Q Consensus 632 ~~~ 634 (803)
++.
T Consensus 237 d~i 239 (520)
T TIGR03269 237 DKA 239 (520)
T ss_pred CEE
Confidence 443
No 230
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.1e-17 Score=169.34 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=101.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G---------------- 533 (803)
+.++|++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 5 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred EEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5677777655 24579999998 8999999999999999999999985321 011
Q ss_pred -------ccccccccccc---hhHHHh-----------------------hhCCCC----CCccCCccchHHHHHH-HHH
Q 003687 534 -------LMVPAESASIP---YFDAIM-----------------------LHMKSY----DSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 534 -------~~Vpa~~a~i~---~~d~I~-----------------------~~ig~~----d~l~~~~stfs~em~~-l~~ 575 (803)
.++|+....++ ..+++. ..++.. +........+|.++++ +..
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 22333321111 111111 111111 0112223445555554 555
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. .++++...+.++
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECC
Confidence 66678999999999999999999888876 66666654 68999999999875 345544333333
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=169.60 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=103.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--h--hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--G--ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--a--q~G--------------- 533 (803)
.+.++|+++.| +++.++++++| |++++|+||||||||||+|+|+|+... . ..|
T Consensus 12 ~l~i~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 12 VYQINGMNLWY----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred eEEEeeEEEEE----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46788887665 24579999998 899999999999999999999997531 0 011
Q ss_pred --------ccccccccccc--hhHHH----------------------hhhCCCCC----CccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~i 576 (803)
.++|+....++ ..+++ +..++..+ .+......++.++++ +..+
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 12333221111 11111 11112211 112233456666655 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. ..+++...+.++
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 6678999999999999999999888876 66667765 78999999999875 345543333333
No 232
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1e-16 Score=185.56 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=106.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------h-------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G-------------I 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------a-------------q 531 (803)
.+.++|+++.+ ..+++++|| |++++|+||||||||||+|+|+|+... . .
T Consensus 265 ~l~~~~l~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 47888887543 138999998 899999999999999999999998511 0 1
Q ss_pred ccccccccc---ccc---chh------------------------------HHHhhhCCCC-CCccCCccchHHHHHH-H
Q 003687 532 CGLMVPAES---ASI---PYF------------------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-I 573 (803)
Q Consensus 532 ~G~~Vpa~~---a~i---~~~------------------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l 573 (803)
...|+|+.. ..+ ... ..++..++.. +........+|.++++ +
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 123455531 111 111 1233334443 3344555678887776 5
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
..+.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+.+. ++++
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIY-KVMRQLADDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 5566678999999999999999999888886 777777677999999999998764 4443
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=1.1e-16 Score=163.71 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=100.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++++...|. .....++++++| |++++|+||||||||||+|+|+|+... ...
T Consensus 6 ~l~~~~l~~~~~--~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYA--PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeC--CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 477788876552 112478999998 899999999999999999999998511 111
Q ss_pred cccccccccccchhHHHhhhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 533 GLMVPAESASIPYFDAIMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 533 G~~Vpa~~a~i~~~d~I~~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
-.++|+....++. .+...+.... .+......++.++++ +..+.+.+.+|+++|||||++|||+...
T Consensus 84 i~~v~q~~~~~~~--tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 84 LTIIPQDPTLFSG--TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred EEEEecCCcccCc--cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 2344444322110 1111110000 012233456665544 6667777899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 601 ~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
..+. .+++.+. .|.++|++||+.++...++
T Consensus 162 ~~l~-~~l~~~~-~~~tiii~th~~~~~~~~d 191 (207)
T cd03369 162 ALIQ-KTIREEF-TNSTILTIAHRLRTIIDYD 191 (207)
T ss_pred HHHH-HHHHHhc-CCCEEEEEeCCHHHHhhCC
Confidence 7776 6666664 4899999999998865443
No 234
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6e-17 Score=179.55 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred ccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccch---h-
Q 003687 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIPY---F- 546 (803)
Q Consensus 499 dIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~~---~- 546 (803)
|+|| |++++|+||||||||||||+|+|+.... +...++++....++. .
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 6776 8999999999999999999999986210 011234444332221 1
Q ss_pred --------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 003687 547 --------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 547 --------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L 611 (803)
..++..++..+........+|.++++ ++.+.+.+.+|+++||||||+|||+.....+. .+++.+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 12333445444444555677777766 66677778999999999999999999888886 556666
Q ss_pred Hh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 612 DN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 612 ~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
.+ .|.|+|++||+.+.+ .++++...+..+.+
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 54 489999999999765 45555444444433
No 235
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.70 E-value=8e-17 Score=169.90 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=92.9
Q ss_pred eccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhccccccccccccc---hh---
Q 003687 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---YF--- 546 (803)
Q Consensus 496 VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G~~Vpa~~a~i~---~~--- 546 (803)
+++++|| |++++|+||||||||||+|+|+|+... .....++|+....++ ..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 6788888 899999999999999999999998511 001123444321111 11
Q ss_pred -----------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCC-------CCcEEEEeCCCCCCChHHHH
Q 003687 547 -----------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATT-------SRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 547 -----------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~-------~psLlLLDEP~sGLD~~~g~ 601 (803)
..++..++..+........+|.++++ +..+.+.+. +|+++||||||+|||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 11222333333333445567777766 444455554 67999999999999999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 602 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 602 ~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
.+. .+++.+.+.|.|+|++||+.+.. .++++.
T Consensus 171 ~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 171 ALD-RLLSELCQQGIAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred HHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 876 77777776789999999999854 455433
No 236
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.2e-17 Score=169.14 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=102.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ...|
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEE----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 36777887655 24579999998 899999999999999999999998630 0111
Q ss_pred --------cccccccccc--chhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
.+++++...+ ...+++ +..++.. +........+|.++++ +..+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1233322111 111111 1111221 1112233456666555 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+.+|+++|||||++|||+.....+. .+++.+.+ +.|+|++||+.+.. ..+++...+..+
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNG 222 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 6778999999999999999999888876 66666654 68999999999875 345443333333
No 237
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=3.7e-17 Score=162.06 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=118.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh----------------hhhccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------LGICGLMV 536 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~----------------laq~G~~V 536 (803)
.+.++++|+.| +...|++.||+ |+++.|+|.+|||||||||+|..+.. ....|..+
T Consensus 6 ~l~v~dlHK~~----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 6 ALEVEDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ceehhHHHhhc----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 57888999987 56789999999 89999999999999999999988751 12234444
Q ss_pred ccccc----------ccchhH--------------------------------HHhhhCCCCCCccCCccchHHHHHH-H
Q 003687 537 PAESA----------SIPYFD--------------------------------AIMLHMKSYDSPADGKSSFQVEMSE-I 573 (803)
Q Consensus 537 pa~~a----------~i~~~d--------------------------------~I~~~ig~~d~l~~~~stfs~em~~-l 573 (803)
|++.. .+++-- .++.+.|..+........++.+.++ .
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 44321 111111 2333444444444445556666555 5
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEEeCCce
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQT 651 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~~~~~l 651 (803)
+.+.+.+.+|+++|+|||||.|||+---+++ .+++.|++.|.|.+++||.+.++... ...+.+.|-+.....++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVL-kv~~~LAeEgrTMv~VTHEM~FAR~V--ss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDV--SSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHH-HHHHHHHHhCCeEEEEeeehhHHHhh--hhheEEeecceecccCCh
Confidence 5566678999999999999999999888886 88999999999999999999887642 234455555544444443
No 238
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.70 E-value=6.9e-17 Score=168.20 Aligned_cols=143 Identities=12% Similarity=0.132 Sum_probs=93.3
Q ss_pred ccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---hcc-------------------cccccccc-cc----ch
Q 003687 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---ICG-------------------LMVPAESA-SI----PY 545 (803)
Q Consensus 497 lndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---q~G-------------------~~Vpa~~a-~i----~~ 545 (803)
++|++| |++++|+||||||||||+|+|+|+.... ..| .+++++.. .+ ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 566666 8999999999999999999999986430 111 23333321 01 10
Q ss_pred hH---------------------HHhhhCCCC---CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 546 FD---------------------AIMLHMKSY---DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 546 ~d---------------------~I~~~ig~~---d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
.+ .++..++.. +........++.++++ +..+.+.+.+|+++||||||+|||+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 01 111122222 1123334556666655 6666777899999999999999999988
Q ss_pred HHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003687 601 TCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 601 ~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
..+. .++..+.+ .|.|+|++||+.+... .+++...+..+
T Consensus 162 ~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 202 (230)
T TIGR02770 162 ARVL-KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDG 202 (230)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8876 66666654 5899999999998764 45544333333
No 239
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1e-16 Score=169.70 Aligned_cols=150 Identities=18% Similarity=0.276 Sum_probs=100.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G---------------- 533 (803)
+.++|++..| +++.++++++| |++++|+||||||||||||+|+|+.... ..|
T Consensus 5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 6677887655 24579999998 8999999999999999999999986310 111
Q ss_pred -------ccccccccccc---hhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 534 -------LMVPAESASIP---YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 -------~~Vpa~~a~i~---~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
.++++....++ ..+++ +..++.. +........++.++++ +..+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 12333221111 11111 1111211 1122233456666655 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~ 633 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. ..+++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQ-DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 6778999999999999999999888886 66666654 68999999999875 34443
No 240
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=167.99 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=98.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc-----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC----------------- 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~----------------- 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||||+|+|+... ...
T Consensus 4 l~~~~l~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 4 IEIENFSAYY----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred EEEEeeEEEe----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5677777655 24578999998 899999999999999999999997521 011
Q ss_pred ------ccccccccccc--chhHHHh----------------------hhCCCCCC----ccCCccchHHHHHH-HHHHH
Q 003687 533 ------GLMVPAESASI--PYFDAIM----------------------LHMKSYDS----PADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ------G~~Vpa~~a~i--~~~d~I~----------------------~~ig~~d~----l~~~~stfs~em~~-l~~iL 577 (803)
..++++....+ ...+++. ..++..+. .......+|.++++ +..+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 12233332111 1111111 01111110 11223445655554 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.+ .++++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSE-NYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhc-CcEEEEEeCCHHHHHHhCCEE
Confidence 778999999999999999999888876 66666655 68999999999854 445443
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=1.3e-16 Score=184.31 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=110.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.++++|++..|.. .+++.+++++|| |++++|+||||||||||||+|+|+....
T Consensus 257 ~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVI-NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccc-cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 4788888765411 123568999998 8999999999999999999999985310
Q ss_pred hccccccccc---cccch-----------------------------hHHHhhhCCCCC-CccCCccchHHHHHH-HHHH
Q 003687 531 ICGLMVPAES---ASIPY-----------------------------FDAIMLHMKSYD-SPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 531 q~G~~Vpa~~---a~i~~-----------------------------~d~I~~~ig~~d-~l~~~~stfs~em~~-l~~i 576 (803)
+.-.++|++. ..++. ...++..++..+ ........+|.++++ +..+
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 0012344331 01110 012233344432 234445677877776 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++|||.+.+. ++++...+..+
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIY-KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 6678999999999999999999888876 777788777999999999998764 45544333333
No 242
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.3e-17 Score=167.82 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=100.9
Q ss_pred CCcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------
Q 003687 473 DGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ 530 (803)
Q Consensus 473 ~g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------ 530 (803)
....-|+++|+.-.+ +++.+++|++. |+-++|+|||||||||||+++++-....
T Consensus 27 ~~~~li~l~~v~v~r----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 27 INEPLIELKNVSVRR----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF 102 (257)
T ss_pred CCcceEEecceEEEE----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchH
Confidence 334457788876443 68999999998 8999999999999999999999975211
Q ss_pred ----hcccc--------ccccc----------cccch------------hHHHhhhCCCCCCccCCccchHHHHHHH-HH
Q 003687 531 ----ICGLM--------VPAES----------ASIPY------------FDAIMLHMKSYDSPADGKSSFQVEMSEI-RS 575 (803)
Q Consensus 531 ----q~G~~--------Vpa~~----------a~i~~------------~d~I~~~ig~~d~l~~~~stfs~em~~l-~~ 575 (803)
.+|.- -+... +.++. ...++..++..........++|.+.++. -.
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHH
Confidence 11110 00000 00000 0123333344333334445566666654 44
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc--CCEEEEEccChhhhh
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI--GCLGIVSTHLHGIFS 629 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~--g~tvI~sTH~~eL~~ 629 (803)
+.+.+.+|.|+|||||++|||...+..+. ..+..+... +.++|++||+.+.+-
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll-~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLL-NRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHH-HHHHHHhcCCCCceEEEEEcchhhcc
Confidence 55668999999999999999999887876 555666543 788999999988754
No 243
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=8.3e-17 Score=158.59 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=122.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH------------------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS------------------------L 528 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~------------------------~ 528 (803)
.|+++++++..-...+.-.|+++++| |+.++|+||+||||||||-.++|+- +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 56677777665445566789999998 8999999999999999999999985 1
Q ss_pred hhhccccccccccccchh------------------------HHHhhhCCCCCCccCCccchHHH-HHHHHHHHHhCCCC
Q 003687 529 LGICGLMVPAESASIPYF------------------------DAIMLHMKSYDSPADGKSSFQVE-MSEIRSIVTATTSR 583 (803)
Q Consensus 529 laq~G~~Vpa~~a~i~~~------------------------d~I~~~ig~~d~l~~~~stfs~e-m~~l~~iLa~a~~p 583 (803)
.+....+|++....+|.. ...+..+|..+.+.....+++.+ .++.+.+.+.+..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 112223444443333322 23455666666666666667665 45577778889999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~ 641 (803)
++++.||||.+||...+..++..+.....+.|.|.+++|||..++..+.+...+..++
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence 9999999999999999999996666666788999999999999998887665555443
No 244
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=168.20 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=100.1
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-h---hc-----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-G---IC----------------- 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-a---q~----------------- 532 (803)
+.++|++..| +++.+++|++| |++++|+||||||||||+|+|+|+... . ..
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEEEEEEE----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 6677777655 23579999998 899999999999999999999996421 0 01
Q ss_pred ------cccccccccccc--hhHHHhh----------------------hCCCC----CCccCCccchHHHHHH-HHHHH
Q 003687 533 ------GLMVPAESASIP--YFDAIML----------------------HMKSY----DSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ------G~~Vpa~~a~i~--~~d~I~~----------------------~ig~~----d~l~~~~stfs~em~~-l~~iL 577 (803)
..++++....++ ..+++.. .++.. +........++.++++ +..+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 123444322111 1111110 11110 0112233456666655 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ +.|+|++||+.+.+ ..+++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIE-ELIQELKK-DYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEEeCHHHHHhhCCEE
Confidence 778999999999999999999888886 66666654 78999999999865 444443
No 245
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=9.8e-17 Score=165.02 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=91.8
Q ss_pred ccCC---CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccc---hhH-
Q 003687 499 TVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP---YFD- 547 (803)
Q Consensus 499 dIsL---Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~---~~d- 547 (803)
|++| .++++|+||||||||||+|+|+|+.... +...+++++...++ ..+
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 7776 4899999999999999999999986210 01223444322111 111
Q ss_pred ------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 003687 548 ------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 548 ------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~IL 608 (803)
.++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 174 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-PEL 174 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 1222333333333445567777665 56666778999999999999999999888886 666
Q ss_pred HHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 609 ETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 609 e~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
..+.+ .|.++|++||+.+... .+++.
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHHhcCEE
Confidence 66654 4899999999998763 44443
No 246
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=170.98 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=101.1
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc---------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC--------------- 532 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~--------------- 532 (803)
..+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+... ...
T Consensus 12 ~~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 347888887665 34679999998 899999999999999999999998421 011
Q ss_pred --------cccccccccccc--hhHHH--------------------hhhCCCC----CCccCCccchHHHHHH-HHHHH
Q 003687 533 --------GLMVPAESASIP--YFDAI--------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 --------G~~Vpa~~a~i~--~~d~I--------------------~~~ig~~----d~l~~~~stfs~em~~-l~~iL 577 (803)
..++|+....++ ..+++ +..++.. +........++.++++ +..+.
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 123343322111 11111 1111110 1112223456666655 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
+.+.+|+++||||||+|||+.....+. .+++.+++ +.++|++||+.+.+. +++
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKK-NFTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 778999999999999999999888886 66666654 689999999997653 443
No 247
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=167.97 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=102.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-h---hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-G---IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-a---q~---------------- 532 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... . ..
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 5 ILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred eEEEEeeEEEE----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 36778887655 24579999998 899999999999999999999997321 0 01
Q ss_pred -------ccccccccccc--chhHHHhh----------------------hCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 533 -------GLMVPAESASI--PYFDAIML----------------------HMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 533 -------G~~Vpa~~a~i--~~~d~I~~----------------------~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
..++|+....+ ...+++.. .++.. +........++.++++ +..+
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 12334332211 11122110 01110 0011223456666554 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. ..+++...+..+
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 6778999999999999999999888886 66666654 68999999999764 455544333333
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=168.01 Aligned_cols=156 Identities=16% Similarity=0.266 Sum_probs=101.2
Q ss_pred EEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc------------------
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC------------------ 532 (803)
Q Consensus 479 ~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~------------------ 532 (803)
.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...
T Consensus 7 ~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 7 SVKNLNLWY----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EeeeEEEEE----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 456665544 24578999998 899999999999999999999998520 001
Q ss_pred -----cccccccccccc--hhHHH-----------------------hhhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 533 -----GLMVPAESASIP--YFDAI-----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 -----G~~Vpa~~a~i~--~~d~I-----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
..|+|+....++ ..+++ +..++..+ ........++.++++ +..+.
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 123444322211 11111 12222211 111223445666554 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.+. .+++...+..+
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 778999999999999999999888776 66666654 899999999998754 45544333333
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.70 E-value=9.9e-17 Score=177.89 Aligned_cols=143 Identities=16% Similarity=0.104 Sum_probs=97.1
Q ss_pred ccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccc---hhH
Q 003687 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP---YFD 547 (803)
Q Consensus 499 dIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~---~~d 547 (803)
+++| |++++|+||||||||||||+|+|+.... ....++++....++ ..+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 6776 8999999999999999999999986210 01123444332221 111
Q ss_pred H-------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 003687 548 A-------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 607 (803)
Q Consensus 548 ~-------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~I 607 (803)
+ ++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~-~~ 173 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL-PY 173 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HH
Confidence 1 222233333333445567777766 66677778999999999999999999888886 66
Q ss_pred HHHHHh-cCCEEEEEccChhhh-hCccccccccccee
Q 003687 608 IETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 608 Le~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
++.+.+ .|.++|++||+.+.+ .++++...+..+.+
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 666654 489999999999876 44555444444444
No 250
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=167.42 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=102.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G---------------- 533 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+... ...|
T Consensus 5 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 5 MESKNLNLWY----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEeEEEE----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5677777655 24578999998 899999999999999999999997421 0111
Q ss_pred -------ccccccccccc--hhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HHHHH
Q 003687 534 -------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 534 -------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~~iL 577 (803)
.++|+....++ ..+++. ..++.. +........++.++++ +..+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 23333322111 111111 111110 1112233456666655 55566
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccce
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+.. ..+++...+.++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 678999999999999999999888886 66666665 58999999999875 3455443333333
No 251
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=6.7e-17 Score=173.45 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=101.8
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------------------hhhccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGL 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------------------laq~G~ 534 (803)
|.++|+...|. .++..+++++|| |++++|+||||||||||+|+|+|+.. +.....
T Consensus 3 i~~~nls~~~~--~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYT--EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeC--CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 67778776552 234579999999 89999999999999999999999962 011223
Q ss_pred cccccccccc--hhHHH--------------hhhCCCCCCccCC-----------ccchHHHHHH-HHHHHHhCCCCcEE
Q 003687 535 MVPAESASIP--YFDAI--------------MLHMKSYDSPADG-----------KSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 535 ~Vpa~~a~i~--~~d~I--------------~~~ig~~d~l~~~-----------~stfs~em~~-l~~iLa~a~~psLl 586 (803)
++|++...++ ..+++ ...++..+.+... -+.++.++++ +..+.+.+.+|+++
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555443221 01111 1122221111111 1237777765 55566778999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
||||||+++|+.....+. .++..+. .++|+|++||+++....+++
T Consensus 161 llDEpts~LD~~~~~~l~-~~l~~~~-~~~tii~isH~~~~i~~~dr 205 (275)
T cd03289 161 LLDEPSAHLDPITYQVIR-KTLKQAF-ADCTVILSEHRIEAMLECQR 205 (275)
T ss_pred EEECccccCCHHHHHHHH-HHHHHhc-CCCEEEEEECCHHHHHhCCE
Confidence 999999999999887776 5555554 48999999999987765443
No 252
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=180.76 Aligned_cols=161 Identities=17% Similarity=0.234 Sum_probs=114.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----hhccc-------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----GICGL------------- 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----aq~G~------------- 534 (803)
.++++|++|.| ++..++++++| |++++|+|.||+|||||+|+|+|.... ...|.
T Consensus 8 ll~~~~i~K~F----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 8 LLELRGISKSF----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eeeeecceEEc----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 47789999987 57799999999 899999999999999999999998611 00111
Q ss_pred ---cccccccccch---hH-------------------------HHhhhCCCCCCccCCccchHHHHHHHHHHH-HhCCC
Q 003687 535 ---MVPAESASIPY---FD-------------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTS 582 (803)
Q Consensus 535 ---~Vpa~~a~i~~---~d-------------------------~I~~~ig~~d~l~~~~stfs~em~~l~~iL-a~a~~ 582 (803)
.|.|+.+.+|. .+ .++.+++...........++...+|+..|. +...+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 22232222221 11 233444443234444556666666654443 34678
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
+++|||||||++|+..+...++ .+++.|+++|.++||+||.++.. +.+++...+..+..
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf-~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~ 223 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEE
Confidence 9999999999999999999997 99999999999999999998654 66766554444443
No 253
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=166.76 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=102.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-h---hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-G---IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-a---q~---------------- 532 (803)
.+.+++++..| +++.+++++|| |++++|+||||||||||+|+|+|+... . +.
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 5 IITSSDVHLFY----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred eEEEEeEEEEE----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 36777887655 24679999998 899999999999999999999997420 0 01
Q ss_pred -------cccccccccccc--hhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 533 -------GLMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 533 -------G~~Vpa~~a~i~--~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
..+++++...++ ..+++. ..++.. +........+|.++++ +..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 123444322111 111111 011110 1112233456666655 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.|+|++||+.+.+. .+++...+..+
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIE-NMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTG 223 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 6778999999999999999999888886 66666655 589999999998763 45544333333
No 254
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.69 E-value=8.8e-17 Score=190.50 Aligned_cols=169 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred CCcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------hh----------
Q 003687 473 DGANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI---------- 531 (803)
Q Consensus 473 ~g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------aq---------- 531 (803)
+.+..+.+++++..|....++..+++|+|| |++++|+||||||||||+|+|+|+... ..
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 344567888998766322223579999999 899999999999999999999998611 00
Q ss_pred -----------------ccccccccc--cccc---hhH----------------------HHhhhCCCCC---CccCCcc
Q 003687 532 -----------------CGLMVPAES--ASIP---YFD----------------------AIMLHMKSYD---SPADGKS 564 (803)
Q Consensus 532 -----------------~G~~Vpa~~--a~i~---~~d----------------------~I~~~ig~~d---~l~~~~s 564 (803)
...+|++.. ...+ ..+ .++..++..+ .......
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 012344432 1111 111 1223334421 2344556
Q ss_pred chHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhh-hCcccccccccce
Q 003687 565 SFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKA 641 (803)
Q Consensus 565 tfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~-~~~~~~~~v~~~~ 641 (803)
++|.++++ +..+.+.+.+|+||||||||++||+.....+. .+++.+.+ .|.++|++||+++.+ .++++...+..+.
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 78888776 66677779999999999999999999888886 67777764 589999999999875 4566554444444
Q ss_pred e
Q 003687 642 M 642 (803)
Q Consensus 642 m 642 (803)
+
T Consensus 247 i 247 (623)
T PRK10261 247 A 247 (623)
T ss_pred e
Confidence 3
No 255
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.69 E-value=1e-16 Score=184.65 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhc-------------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC------------------- 532 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~------------------- 532 (803)
..++++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+......
T Consensus 259 ~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 259 PRIVLNNGVVSY----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred ceEEEeceEEEE----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 357888887765 24579999999 899999999999999999999997421001
Q ss_pred ---cccccccccccc-----h-------------------------hHHHhhhCCCCC-CccCCccchHHHHHH-HHHHH
Q 003687 533 ---GLMVPAESASIP-----Y-------------------------FDAIMLHMKSYD-SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ---G~~Vpa~~a~i~-----~-------------------------~d~I~~~ig~~d-~l~~~~stfs~em~~-l~~iL 577 (803)
..++++...... . ...++..++..+ ........+|.++++ +..+.
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 122332210000 0 011222333332 233344667777766 55566
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC-CEEEEEccChhhhh
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 629 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g-~tvI~sTH~~eL~~ 629 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+.+ .++|++||+.+++.
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhh
Confidence 778999999999999999999888886 6666776555 57999999998774
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=9e-17 Score=165.75 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=94.8
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------------hccccccccccccc
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP 544 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------------q~G~~Vpa~~a~i~ 544 (803)
+..++++++| |++++|+|||||||||||++|+|+.... +...++++....+.
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 4578999998 8999999999999999999999986110 11123444322111
Q ss_pred --hhHHH--------------hhhCCCCCC-----------ccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCC
Q 003687 545 --YFDAI--------------MLHMKSYDS-----------PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 545 --~~d~I--------------~~~ig~~d~-----------l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD 596 (803)
..+++ ...++..+. .......++.++++ +..+.+.+.+|+++||||||+|||
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 11111 111111100 11223466766665 566667789999999999999999
Q ss_pred hHHHHHHHHH-HHHHHHhcCCEEEEEccChhhhhCc
Q 003687 597 TAKGTCIAGS-IIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 597 ~~~g~~L~~~-ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
+.....+... +++.+.+.|.|+|++||+.+....+
T Consensus 173 ~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~ 208 (218)
T cd03290 173 IHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHA 208 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhC
Confidence 9988888753 7777777789999999999876543
No 257
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=8.6e-17 Score=159.90 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=99.5
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhcccc---------ccccc--cccchhHHHhhhCCCCCCccCCcc-------
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM---------VPAES--ASIPYFDAIMLHMKSYDSPADGKS------- 564 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~---------Vpa~~--a~i~~~d~I~~~ig~~d~l~~~~s------- 564 (803)
|++++|+||+||||||||+.|+|+....+.... -|++. +.+++-.++|.++++.+|+..+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a 104 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNA 104 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCH
Confidence 899999999999999999999999754332221 23332 456777788888888888766543
Q ss_pred ------------------------chHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEE
Q 003687 565 ------------------------SFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI 619 (803)
Q Consensus 565 ------------------------tfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI 619 (803)
++|.+.+ +.+.+...+.+..++||||||+.|||.-+.++...+.+...+++.|++
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tll 184 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEE
Confidence 2222222 233344447899999999999999999999987444444467899999
Q ss_pred EEccChhhhh-CcccccccccceeE
Q 003687 620 VSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 620 ~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
|+||..+.+. ++++...+.++.+.
T Consensus 185 mVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 185 MVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred EEeCCHHHHHHhhhceEEEeCCEEE
Confidence 9999997664 44443333444443
No 258
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.5e-16 Score=165.84 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=103.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G---------------- 533 (803)
+.++|+...| +++.+++++|| |++++|+||||+|||||+|+|+|+.... ..|
T Consensus 5 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 5 LSAQDVNIYY----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEeeeEEEE----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 5667776554 24679999998 8999999999999999999999985211 011
Q ss_pred -------ccccccccccc---hhHHHhh----------------------hCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 534 -------LMVPAESASIP---YFDAIML----------------------HMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 -------~~Vpa~~a~i~---~~d~I~~----------------------~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
.+++++...++ ..+++.. .++.. +........+|.++++ ++.+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 13333322111 1122110 01100 0112223456666654 6666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
.+.+.+|+++|||||++|+|+.....+. .+++.+++ +.++|++||+.+... .+++...+..+.+
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDL 225 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7778999999999999999999888776 66677764 699999999998764 4554433334333
No 259
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.69 E-value=5.7e-17 Score=208.62 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=119.1
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hc
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------IC 532 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~ 532 (803)
..++++++++.|. .+.+.+++|++| |++++|+||||||||||+|+|+|+.... +.
T Consensus 1936 ~~L~v~nLsK~Y~--~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYS--GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEEC--CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 3578889987762 113679999999 8999999999999999999999986210 11
Q ss_pred cccccccccccch---hH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEE
Q 003687 533 GLMVPAESASIPY---FD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVL 587 (803)
Q Consensus 533 G~~Vpa~~a~i~~---~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlL 587 (803)
..++|+..+..+. .+ .++..++..+.......++|.++++ +..+++.+.+|+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2345554322211 11 1222333333334445677888776 667888899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEEE
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 645 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~~~ 645 (803)
|||||+|+|+..+..+. .+++.+++.|++||++||++++++ ++++...+.++.+...
T Consensus 2094 LDEPTsGLDp~sr~~l~-~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLW-NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred EECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999888875 777888777999999999998774 5666655556655544
No 260
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-16 Score=166.16 Aligned_cols=147 Identities=19% Similarity=0.305 Sum_probs=98.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh----cc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----CG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq----~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+..... .|
T Consensus 4 ~l~~~~l~~~~----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 4 KIKIRGVNFFY----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred eEEEEEEEEEE----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 46677877655 24579999998 89999999999999999999999863210 11
Q ss_pred --------ccccccccccc--hhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
.++|+....++ ..+++. ..++.. +........++.++++ +..+
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 12333322111 111111 001111 0112233445666554 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+. ++.|+|++||+.+...
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~-~~~tilivsh~~~~~~ 210 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELK-QNYTIAIVTHNMQQAA 210 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHH
Confidence 6778999999999999999999888876 6666665 4899999999998764
No 261
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.1e-16 Score=156.90 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=86.1
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc-cccccccccchhHHHhhhCCCCCCccCCccchHH
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 568 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~-~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~ 568 (803)
+.+++++++ |++++|+||||+|||||+++|+|+.... .|. ++......-.........++.. ..++.
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~-------~qlS~ 83 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGYV-------PQLSG 83 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEEE-------eeCCH
Confidence 468888887 7999999999999999999999976321 121 1111100000000111111110 11555
Q ss_pred HHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 569 EMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 569 em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
++++ +..+.+.+.+|+++|+|||++|+|+.....+. .++..+.+.+.++|++||+.+....
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5554 56666778999999999999999999888876 6666665557899999999988754
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=167.71 Aligned_cols=151 Identities=18% Similarity=0.250 Sum_probs=101.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------- 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq---------------------- 531 (803)
+.++++++.| +++.+++|++| |++++|+||||||||||+|+|+|+.....
T Consensus 11 i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 11 FNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred eeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 6677777655 45679999999 89999999999999999999999852110
Q ss_pred ----ccccccccccccc---hhHHH----------------------hhhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 532 ----CGLMVPAESASIP---YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 532 ----~G~~Vpa~~a~i~---~~d~I----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
...++++....++ ..+++ +..++... ........++.++++ ++.+.
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 1123343322221 11111 11122211 112233456666655 66667
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~ 634 (803)
+.+.+|+++||||||+|||+.....+. .++..+.+ ++|+|++||+.+.+ ..+++.
T Consensus 167 al~~~P~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiilvsh~~~~~~~~~d~v 222 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIE-KLITELKN-EIAIVIVSHNPQQVARVADYV 222 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CcEEEEEECCHHHHHHhCCEE
Confidence 778999999999999999999888776 66666654 68999999999876 445443
No 263
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=9.9e-17 Score=157.61 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=102.6
Q ss_pred CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhccccccccccccc--
Q 003687 491 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIP-- 544 (803)
Q Consensus 491 ~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~G~~Vpa~~a~i~-- 544 (803)
.++..++|++|| |++++||||+|||||||+|+++.++. ..|..+|+.+..+.++
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 457789999999 89999999999999999999999862 1122223323222221
Q ss_pred --------h-----------hHHHhhhCCCCCCccC-CccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 003687 545 --------Y-----------FDAIMLHMKSYDSPAD-GKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCI 603 (803)
Q Consensus 545 --------~-----------~d~I~~~ig~~d~l~~-~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L 603 (803)
+ +-.++.+++..+.+.. ....++++.++ ++.+......|+++||||||+.||+.+...+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 1 1124445555444432 23344554444 5555566789999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEccChhh-hhCcccccccc
Q 003687 604 AGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAA 638 (803)
Q Consensus 604 ~~~ILe~L~~~g~tvI~sTH~~eL-~~~~~~~~~v~ 638 (803)
-..+.++.++++..++++||+.+. ...+++...+.
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence 766667777889999999999987 34454443333
No 264
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.8e-16 Score=165.73 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=94.8
Q ss_pred eccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccccccccccch---hH---
Q 003687 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY---FD--- 547 (803)
Q Consensus 496 VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~Vpa~~a~i~~---~d--- 547 (803)
++++++| |++++|+||||+|||||+|+|+|+.... +...++++....++. .+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 7899988 8999999999999999999999985211 112234443222211 11
Q ss_pred ------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 003687 548 ------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 608 (803)
Q Consensus 548 ------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~IL 608 (803)
.++..++..+........++.++++ +..+.+.+.+|+++||||||+|+|+.....+. .++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR-EEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH-HHH
Confidence 1122233333333344566766655 66677778999999999999999999888775 666
Q ss_pred HHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 609 ETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 609 e~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+.+.. .|+++|++||+.+... .+++.
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~i 200 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADKV 200 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 66654 4899999999998753 45443
No 265
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=169.85 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=101.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G--------------- 533 (803)
.+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 20 ~l~~~nl~~~~----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 20 VFEVEGVKVFY----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred eEEEeeEEEEe----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 57788887665 24579999999 8999999999999999999999975210 011
Q ss_pred --------ccccccccccc--hhHHHh--------------------hhCCCC----CCccCCccchHHHHHH-HHHHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM--------------------LHMKSY----DSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~--------------------~~ig~~----d~l~~~~stfs~em~~-l~~iLa 578 (803)
.++|+....++ ..+++. ..++.. +........++.++++ +..+.+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 23444322211 111111 111110 1112233456666655 666777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+... ++++
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKE-QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 78999999999999999999888886 66666665 689999999998764 4443
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3e-16 Score=165.03 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=99.3
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG---------------- 533 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G---------------- 533 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 4 FNIENLDLFY----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred EEEeccEEEE----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5677777655 24679999998 8999999999999999999999985321 011
Q ss_pred ------ccccccccccc--hhHHHhh----------------------hCCCC----CCccCCccchHHHHHH-HHHHHH
Q 003687 534 ------LMVPAESASIP--YFDAIML----------------------HMKSY----DSPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 534 ------~~Vpa~~a~i~--~~d~I~~----------------------~ig~~----d~l~~~~stfs~em~~-l~~iLa 578 (803)
.|+|+....++ ..+++.. .++.. +........++.++++ +..+.+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 13333322111 1111110 01110 0111223355665554 555666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+|+++||||||+|||+.....+. .+++.+.+ +.|+|++||+.+... .+++.
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~~~~d~i 214 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIE-ELMEELKK-NYTIVIVTHSMQQARRISDRT 214 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEecCHHHHHHhCCEE
Confidence 78999999999999999999877776 67777765 589999999998754 44443
No 267
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=166.50 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=99.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 6 ~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 6 ILSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred eEEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 36677776554 34679999998 8999999999999999999999874210 012
Q ss_pred --------ccccccccccc--hhHHHh----------------------hhCCCCC----CccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~d----~l~~~~stfs~em~~-l~~i 576 (803)
.+++++...++ ..+++. ..++..+ ........++.++++ +..+
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 12333321111 111110 0111100 111223345555554 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+.+|+++|||||++|||+.....+. .+++.+.+ +.++|++||+.+... .+++.
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~-~~tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIE-DLIEDLKK-EYTVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhh-CceEEEEEcCHHHHHhhCCEE
Confidence 6778999999999999999999888886 66666665 589999999998763 45443
No 268
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=170.98 Aligned_cols=149 Identities=18% Similarity=0.273 Sum_probs=101.7
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc--------------
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC-------------- 532 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~-------------- 532 (803)
...+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...
T Consensus 37 ~~~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3447888887665 24679999998 899999999999999999999998531 011
Q ss_pred ---------cccccccccccc--hhHHH--------------------hhhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 533 ---------GLMVPAESASIP--YFDAI--------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 533 ---------G~~Vpa~~a~i~--~~d~I--------------------~~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
..++|+....++ ..+++ +..++.. +........+|.++++ +..+
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 123343322111 11111 1112221 1122334567776665 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+.+++.
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~-~~tiii~tH~~~~i~ 243 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIE-DLIEELAE-EYTVVIVTHNMQQAA 243 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 6778999999999999999998887776 67777765 479999999998764
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.68 E-value=3e-16 Score=166.31 Aligned_cols=155 Identities=13% Similarity=0.061 Sum_probs=101.2
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------h
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------G 530 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------a 530 (803)
.+.+.++++...|. ...+.++++++| |++++|+|+||||||||+|+|+|+... .
T Consensus 17 ~~~i~~~~l~~~~~--~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 17 GGEIKIHDLCVRYE--NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CceEEEEEEEEEeC--CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45688888876551 112578999998 899999999999999999999998511 0
Q ss_pred hccccccccccccch--hH--------------HHhhhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCC
Q 003687 531 ICGLMVPAESASIPY--FD--------------AIMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~a~i~~--~d--------------~I~~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~ 582 (803)
....++++....++. .+ ......+..+ .+......++.++++ +..+.+.+.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 112334443321110 00 0001111110 111122356666554 6667777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
|+++||||||+|+|+.....+. .+++.+. .+.|+|++||+++....+++
T Consensus 175 p~llllDEPt~gLD~~~~~~l~-~~l~~~~-~~~tiii~sh~~~~~~~~dr 223 (257)
T cd03288 175 SSILIMDEATASIDMATENILQ-KVVMTAF-ADRTVVTIAHRVSTILDADL 223 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHH-HHHHHhc-CCCEEEEEecChHHHHhCCE
Confidence 9999999999999999877665 6666654 48999999999998765443
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.68 E-value=2.1e-16 Score=183.79 Aligned_cols=165 Identities=17% Similarity=0.102 Sum_probs=109.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----h-----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----I----------------- 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q----------------- 531 (803)
.+++++++..|....+++.+++++|| |++++|+||||||||||+|+|+|+.... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 36778887665211113579999999 8999999999999999999999986420 0
Q ss_pred --------cccccccccc--ccc---hhH----------------------HHhhhCCCCC---CccCCccchHHHHHH-
Q 003687 532 --------CGLMVPAESA--SIP---YFD----------------------AIMLHMKSYD---SPADGKSSFQVEMSE- 572 (803)
Q Consensus 532 --------~G~~Vpa~~a--~i~---~~d----------------------~I~~~ig~~d---~l~~~~stfs~em~~- 572 (803)
...+++++.. ..+ ..+ .++..++..+ ........+|.++++
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 1123444321 110 000 1122223321 113344567777665
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Cccccccccccee
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
+..+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.+. ++++...+..+++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 55667778999999999999999999888886 67777755 4899999999998764 5555444444443
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.2e-16 Score=180.64 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=105.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------hh
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GI 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------------aq 531 (803)
.++++|++.. .+.+++++|| |++++|+||||||||||+|+|+|+... .+
T Consensus 250 ~i~~~~l~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 250 ILEVRNLTSL------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EEEEeCcccc------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4788888653 1358999998 899999999999999999999998511 00
Q ss_pred cccccccccc---ccc---hh---------------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 532 CGLMVPAESA---SIP---YF---------------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 532 ~G~~Vpa~~a---~i~---~~---------------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
...++|+... .++ .. ..++..++.. +........+|.++++ +..+
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 0123444311 000 00 1122223332 2344455677877776 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIK 635 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~ 635 (803)
.+.+.+|+++||||||+|+|+.....+. .+++.+.+.|.++|++||+.+.+. ++++..
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~-~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~ 462 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIY-QLIAELAKKDKGIIIISSEMPELLGITDRIL 462 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHH-HHHHHHHHCCCEEEEECCChHHHHhhCCEEE
Confidence 6778999999999999999999888886 677777778999999999998764 444433
No 272
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=3e-16 Score=182.12 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=106.8
Q ss_pred eEEEeccccccccc-CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------h--hh-----------
Q 003687 477 CLKMNGLSPYWFDA-AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------L--GI----------- 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~-~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------l--aq----------- 531 (803)
.+.+++++..|... .+++.+++++|| |++++|+||||||||||+|+|+|+.. + ..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 47888887665211 123579999998 89999999999999999999999851 1 10
Q ss_pred -------ccccccccccccc---hhHH--------------------HhhhCCCCC-----CccCCccchHHHHHH-HHH
Q 003687 532 -------CGLMVPAESASIP---YFDA--------------------IMLHMKSYD-----SPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 532 -------~G~~Vpa~~a~i~---~~d~--------------------I~~~ig~~d-----~l~~~~stfs~em~~-l~~ 575 (803)
...|+|+....++ ..+. ++..++..+ ........+|.++++ +..
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 0124444422111 1111 223334332 123445677777766 566
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccc
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
+.+.+.+|+++||||||+|||+.....+. .+++.+. +.|.++|++||+.+.+. ++++
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 66778999999999999999999888886 6666665 45899999999998764 4443
No 273
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=167.77 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=103.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+|+||||||||+|+|+|+... ...|
T Consensus 24 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 24 VFDTQNLNLWY----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred EEEEeeeEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 47888887655 24578999998 899999999999999999999998531 1111
Q ss_pred --------ccccccccccc--hhHHHhh--hC-CC-----------------------CCCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAIML--HM-KS-----------------------YDSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~~--~i-g~-----------------------~d~l~~~~stfs~em~~-l~~i 576 (803)
.|+|+....++ ..+++.. .. +. .+........+|.++++ +..+
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 12333321111 1122210 00 00 00111223445666554 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.+. .+++...+.++
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 6678999999999999999999888886 66666665 689999999998753 45544333333
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=184.44 Aligned_cols=148 Identities=10% Similarity=0.112 Sum_probs=100.1
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hccccccccccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP 544 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a~i~ 544 (803)
+.++|++..| +++.+++++|| |++++|+||||||||||||+|+|+.... ....++++....++
T Consensus 2 l~i~~ls~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 2 LSTANITMQF----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred EEEEEEEEEe----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 4567776654 34679999998 8999999999999999999999986211 11124444321110
Q ss_pred ---h-----------------------------------------------------hHHHhhhCCCCCCc-cCCccchH
Q 003687 545 ---Y-----------------------------------------------------FDAIMLHMKSYDSP-ADGKSSFQ 567 (803)
Q Consensus 545 ---~-----------------------------------------------------~d~I~~~ig~~d~l-~~~~stfs 567 (803)
. ...++..++..+.. .....++|
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 0 01122233333222 12346778
Q ss_pred HHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 568 VEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 568 ~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.++++ +..+.+.+.+|+++||||||+|||+.....+. .++ .+.|.+||++||+.++.. .+++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l---~~~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLE-DVL---NERNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHH---HhCCCeEEEEeCCHHHHHhhcce
Confidence 88776 55566678999999999999999999877765 333 346899999999998764 4443
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.67 E-value=1.4e-16 Score=205.01 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=118.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------------------hhcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------------------aq~G 533 (803)
.+.++|+++.|. .+++.++++++| |++++|+||||||||||||+|+|+... .+..
T Consensus 928 ~L~I~nLsK~y~--~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFE--PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEec--CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 467788877652 135689999998 899999999999999999999999611 1112
Q ss_pred ccccccccccc---hh---------------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEE
Q 003687 534 LMVPAESASIP---YF---------------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 588 (803)
Q Consensus 534 ~~Vpa~~a~i~---~~---------------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLL 588 (803)
.++|+....++ .. +.++..++..+.......++|.++++ ++.+.+.+.+|+++||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 34555432221 11 12334445544444556778888876 6667788999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEE
Q 003687 589 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGT 644 (803)
Q Consensus 589 DEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~~ 644 (803)
||||+|+|+..+..+. .+++.++ .|.++|++||+++++. ++++...+..+.+..
T Consensus 1086 DEPTSGLDp~sr~~l~-~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIW-DLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred ECCCcCCCHHHHHHHH-HHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999888885 7777775 5899999999998875 566655555555543
No 276
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.7e-16 Score=167.60 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=103.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~---------------- 532 (803)
.+.+++++..| +++.+++|++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 21 ~l~i~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 21 AMAAVNLTLGF----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred EEEEeeEEEEE----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 46788887765 34689999998 8999999999999999999999985310 01
Q ss_pred ------cccccccccccc--hhHHH----------------------hhhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 533 ------GLMVPAESASIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ------G~~Vpa~~a~i~--~~d~I----------------------~~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
..|+|+....++ ..+++ +..++... .+......++.++++ +..+.
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 123444322111 11111 11112111 011223456666655 56666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAY 639 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~ 639 (803)
+.+.+|+++||||||+|+|+.....+. .+++.+.+ +.|+|++||+.+.+ ..+++...+..
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 778999999999999999999888886 66666665 58999999999875 34554433333
No 277
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.67 E-value=2.7e-16 Score=182.26 Aligned_cols=147 Identities=12% Similarity=0.189 Sum_probs=103.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------h-------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G-------------I 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------a-------------q 531 (803)
.+.+++++. .+++++|| |++++|+||||||||||+|+|+|+... . .
T Consensus 268 ~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 477777762 15888888 899999999999999999999998510 0 1
Q ss_pred ccccccccc---ccc---chh------------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHHHHh
Q 003687 532 CGLMVPAES---ASI---PYF------------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTA 579 (803)
Q Consensus 532 ~G~~Vpa~~---a~i---~~~------------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~ 579 (803)
...|+|+.. ..+ ... ..++..++.. +........+|.++++ +..+.+.
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 123455431 011 111 1223334443 3344455678887776 5556677
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++|||.+++. ++++
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 8999999999999999999888886 677777777999999999998764 4443
No 278
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.67 E-value=1.3e-16 Score=182.87 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=106.6
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccc--cccccccc---c
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGL--MVPAESAS---I 543 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~--~Vpa~~a~---i 543 (803)
+.+++++..+.. ...+.++++++| |++++|+||||||||||||+|+|+..... .|. .++..... +
T Consensus 22 L~lknL~~~~~~-~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l 100 (549)
T PRK13545 22 DKLKDLFFRSKD-GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL 100 (549)
T ss_pred eEEEEEEEecCC-CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC
Confidence 556666543311 112479999998 89999999999999999999999862211 010 00000000 0
Q ss_pred chhH---------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 003687 544 PYFD---------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 544 ~~~d---------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~ 601 (803)
...+ .++..++..+........+|.++++ +..+.+.+.+|+++||||||+|||+....
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~ 180 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTK 180 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 1111 1233344444444556678887766 56667778999999999999999999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 602 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 602 ~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
.+. .++..+.+.|.++|++||+++.+. ++++...+.++
T Consensus 181 ~Ll-elL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~G 219 (549)
T PRK13545 181 KCL-DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYG 219 (549)
T ss_pred HHH-HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 886 666667777999999999998763 45544333333
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=179.38 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=103.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------------hh
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GI 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------------aq 531 (803)
.+.+++++. .+++++|| |++++|+||||||||||||+|+|+... .+
T Consensus 257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 467777752 36889888 899999999999999999999998511 01
Q ss_pred cccccccccc---ccc---hh---------------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 532 CGLMVPAESA---SIP---YF---------------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 532 ~G~~Vpa~~a---~i~---~~---------------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
.-.|+|+... .++ .. ..++..++.. +........+|.++++ +..+
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 1234555421 110 11 1223333442 2334445677777766 5566
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+.+.+|+++||||||+|||+.....+. .+++.+.+.|.++|++||+.+++. ++++
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 6778999999999999999999888886 677777767999999999998764 4443
No 280
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=2.9e-16 Score=166.76 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=94.0
Q ss_pred ceeccccCC---CceEEEEecCCCChhHHHHHHHhhHhhh----------------hcccc-----------------cc
Q 003687 494 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLM-----------------VP 537 (803)
Q Consensus 494 ~~VlndIsL---Geii~ItGPNGsGKSTLLR~Iagl~~la----------------q~G~~-----------------Vp 537 (803)
+.+++++++ |++++|+||||||||||||+|+|+.... ..|.. ++
T Consensus 14 ~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 14 SFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred chhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 357788877 8999999999999999999999996211 01111 11
Q ss_pred ccccccc------------------hhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 003687 538 AESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 538 a~~a~i~------------------~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~ 598 (803)
+.....+ ....++..++..+........++.++++ +..+.+.+.+|+++|+||||+|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 1111111 0112333444444444455567776665 55566678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 599 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 599 ~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
....+. .+++.+.+.++++|++||+++...
T Consensus 174 ~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~ 203 (255)
T cd03236 174 QRLNAA-RLIRELAEDDNYVLVVEHDLAVLD 203 (255)
T ss_pred HHHHHH-HHHHHHHhcCCEEEEEECCHHHHH
Confidence 888886 677777767899999999998765
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.6e-16 Score=170.04 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=101.0
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc---------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC--------------- 532 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~--------------- 532 (803)
..+.++|+...| +++.++++++| |++++|+|||||||||||++|+|+... ...
T Consensus 44 ~~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 357888887665 24679999998 899999999999999999999998521 011
Q ss_pred --------ccccccccccc--chhHHHhh----------------------------------hCCCC----CCccCCcc
Q 003687 533 --------GLMVPAESASI--PYFDAIML----------------------------------HMKSY----DSPADGKS 564 (803)
Q Consensus 533 --------G~~Vpa~~a~i--~~~d~I~~----------------------------------~ig~~----d~l~~~~s 564 (803)
..++|+....+ ...+++.. .++.. +.......
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 12344432211 11111110 01110 01122234
Q ss_pred chHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccc
Q 003687 565 SFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 632 (803)
Q Consensus 565 tfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~ 632 (803)
.++.++++ +..+.+.+.+|+|+|||||++|||+.....+. .+++.+.+ +.++|++||+.+.+. +++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~-~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE-DLIEELAE-EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEEcCHHHHHHhcC
Confidence 56666655 56666778999999999999999999888875 66677765 489999999998754 444
No 282
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=165.89 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=104.3
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc-------------
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG------------- 533 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G------------- 533 (803)
...+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 23 ~~~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFY----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEE----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3457888887665 24579999998 899999999999999999999998431 0111
Q ss_pred ----------ccccccccccc--hhHHHh----------------------hhCCCCC----CccCCccchHHHHHH-HH
Q 003687 534 ----------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 534 ----------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~d----~l~~~~stfs~em~~-l~ 574 (803)
.++|++...++ ..+++. ..++..+ ........++.++++ +.
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 23333322111 111111 0111110 011222345555554 56
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+.+.+.+|+++||||||+|||+.....+. .++..+.+ +.++|++||+.+.+ ..+++...+.++
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 666778999999999999999999877775 66666665 68999999999875 345544333333
No 283
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.67 E-value=4e-16 Score=161.96 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=89.4
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh---------------hccccccccccc-----cchhHH--------------
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS-----IPYFDA-------------- 548 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la---------------q~G~~Vpa~~a~-----i~~~d~-------------- 548 (803)
|++++|+||||||||||+|+|+|+.... +...|+|+.... ....+.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 7999999999999999999999985211 112344544221 111111
Q ss_pred -----------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003687 549 -----------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 616 (803)
Q Consensus 549 -----------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~ 616 (803)
++..++..+........++.++++ +..+.+.+.+|+++|+||||+|||+.....+. .+++.+.++|.
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 164 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT-ELFIELAGAGT 164 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCC
Confidence 122233333333334566777665 56666779999999999999999999988887 66666766799
Q ss_pred EEEEEccChhhh-hCccc
Q 003687 617 LGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 617 tvI~sTH~~eL~-~~~~~ 633 (803)
|+|++||+.+.. ..+++
T Consensus 165 tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 165 AILMTTHDLAQAMATCDR 182 (223)
T ss_pred EEEEEeCCHHHHHHhCCE
Confidence 999999999865 34443
No 284
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.8e-16 Score=165.30 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=100.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~---------------- 532 (803)
.+.++|++..| +++.++++++| |++++|+||||||||||+|+|+|+.... ..
T Consensus 16 ~l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 16 KSEVNKLNFYY----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred eEEEEEEEEEE----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 47888888765 24579999998 8999999999999999999999975210 01
Q ss_pred ---------cccccccccccc--hhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HH
Q 003687 533 ---------GLMVPAESASIP--YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IR 574 (803)
Q Consensus 533 ---------G~~Vpa~~a~i~--~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~ 574 (803)
..++++....++ ..+++. ..++.. +........++.++++ +.
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 123333321111 111111 011110 0111223345655554 55
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccc
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+.+.+|+++||||||+|||+.....+. .+++.+++ +.++|++||+.+... ++++.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~-~~tiiivth~~~~~~~~~d~i 230 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIE-ELISDLKN-KVTILIVTHNMQQAARVSDYT 230 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHh-CCEEEEEecCHHHHHHhCCEE
Confidence 566678999999999999999999888876 66667765 689999999998763 45543
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.3e-16 Score=180.09 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=103.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------h-h-------------h
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------L-G-------------I 531 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------l-a-------------q 531 (803)
.+.+++++. ..+++++|| |++++|+||||||||||+|+|+|+.. + . +
T Consensus 257 ~l~~~~~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 257 RLRLDGLKG--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred EEEEecccc--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 466666651 247899998 89999999999999999999999851 1 0 0
Q ss_pred cccccccccc---ccc---hh---------------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHH
Q 003687 532 CGLMVPAESA---SIP---YF---------------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 532 ~G~~Vpa~~a---~i~---~~---------------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~i 576 (803)
...++|+... .++ .. ..++..++.. +........+|.++++ +..+
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG 408 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH
Confidence 1123444310 110 11 1122334442 3344455678887776 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+.+.+|+|+||||||+|||+.....+. .+++.+.+.|.++|++|||.+.+. ++++
T Consensus 409 ~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 409 RWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred HHHccCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 6678999999999999999999988886 777778778999999999998764 4443
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=99.67 E-value=3.5e-16 Score=184.06 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=106.2
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------hcccccccccccc-
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI- 543 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------q~G~~Vpa~~a~i- 543 (803)
..+.++++++.| + ...++++++ |++++|+||||||||||+|+|+|+.... ....|+|+.....
T Consensus 339 ~~l~~~~ls~~~----~-~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 339 TLVEYPDLTKKL----G-DFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413 (590)
T ss_pred eEEEEcceEEEE----C-CEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence 347788887654 1 235788777 8999999999999999999999986211 1123455543211
Q ss_pred --chh----------------HHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 003687 544 --PYF----------------DAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 544 --~~~----------------d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~ 604 (803)
... ..++..++..+.......++|.++++ ++.+.+.+.+|+++||||||+|||+.....+.
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~ 493 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 111 22344455554455566778877665 66677778999999999999999999888887
Q ss_pred HHHHHHHHh-cCCEEEEEccChhhhh
Q 003687 605 GSIIETLDN-IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 605 ~~ILe~L~~-~g~tvI~sTH~~eL~~ 629 (803)
.+++.+.+ .|.++|++|||.+++.
T Consensus 494 -~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 494 -KAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred -HHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 66666654 5899999999998765
No 287
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=2.2e-16 Score=170.09 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=99.9
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-------cccccccccccc
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASI 543 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-------~G~~Vpa~~a~i 543 (803)
...+.++++... ++.+++++|| |++++|+||||||||||+|+|+|+..... ...|+++.....
T Consensus 37 ~~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 37 DNNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 345788888642 3569999998 89999999999999999999999863211 122455443211
Q ss_pred --chhHHH--------------hhhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 003687 544 --PYFDAI--------------MLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 544 --~~~d~I--------------~~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGL 595 (803)
...+++ ....+..+ .+......++.++++ +..+.+.+.+|+++|||||++||
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 111111 11111111 011112456666655 56666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
|+.....+...+++.+.+ +.++|++||+.+....+
T Consensus 191 D~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~ 225 (282)
T cd03291 191 DVFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKA 225 (282)
T ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhC
Confidence 998877776556666554 78999999999876543
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.6e-16 Score=185.32 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=109.0
Q ss_pred ceEEEecccccccccC-------CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------
Q 003687 476 NCLKMNGLSPYWFDAA-------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------- 529 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~-------~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------- 529 (803)
..++++|++..|.... +...+++++|| |++++|+||||||||||+|+|+|+...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 3478888876652100 12468999999 899999999999999999999998610
Q ss_pred --------hhccccccccc--cccc---hhH----------------------HHhhhCCCC-CCccCCccchHHHHHH-
Q 003687 530 --------GICGLMVPAES--ASIP---YFD----------------------AIMLHMKSY-DSPADGKSSFQVEMSE- 572 (803)
Q Consensus 530 --------aq~G~~Vpa~~--a~i~---~~d----------------------~I~~~ig~~-d~l~~~~stfs~em~~- 572 (803)
.....++++.. ...+ ..+ .++..++.. +........+|.++++
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 01123455542 1111 111 122233442 2234445678888776
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccc
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+..+.+.+.+|+||||||||+|||+.....+. .+++.+.+ .|.++||+|||++.+. ++++.
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 56677778999999999999999999988887 66666654 5899999999998764 44443
No 289
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=165.52 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=98.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+... ...|
T Consensus 10 ~l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EEEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 36788887665 24578999998 899999999999999999999997521 0111
Q ss_pred --------ccccccccccc--hhHHHh--------------------hhCCCCC----CccCCccchHHHHHH-HHHHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM--------------------LHMKSYD----SPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~--------------------~~ig~~d----~l~~~~stfs~em~~-l~~iLa 578 (803)
.++++....++ ..+++. ..++..+ ........+|.++++ +..+.+
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 12233221111 111111 1111100 111223345666554 556667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCcc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPL 632 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~ 632 (803)
.+.+|+++|||||++|||+.....+. .++..+.+ +.++|++||+.+.+ ..++
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~-~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIE-ELMHELKE-QYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 78999999999999999999888876 67777765 58999999999865 3444
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.66 E-value=4.3e-16 Score=181.21 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=108.8
Q ss_pred eEEEecccccccccC-------CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh------h----------
Q 003687 477 CLKMNGLSPYWFDAA-------EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------L---------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~-------~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~------l---------- 529 (803)
.+.+++++..|.... +++.+++++|| |++++|+||||||||||+|+|+|+.. +
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 477888876552110 13579999999 89999999999999999999999851 0
Q ss_pred ------hhcccccccccc--cc---chhHH-----------------------HhhhCCCC-CCccCCccchHHHHHH-H
Q 003687 530 ------GICGLMVPAESA--SI---PYFDA-----------------------IMLHMKSY-DSPADGKSSFQVEMSE-I 573 (803)
Q Consensus 530 ------aq~G~~Vpa~~a--~i---~~~d~-----------------------I~~~ig~~-d~l~~~~stfs~em~~-l 573 (803)
.....++|+... .+ ...+. ++..++.. +........+|.++++ +
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 011234444321 11 11111 22223332 1233345677777766 5
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhh-Ccccccccccc
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
..+.+.+.+|+++||||||+|||+.....+. .+++.+.+ .|.++|++||+.+.+. ++++...+..+
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 6667778999999999999999999988886 66666654 4899999999998764 45544333333
No 291
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=4.7e-16 Score=167.20 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=108.5
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---hhhc------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LGIC------------------ 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---laq~------------------ 532 (803)
++++|++-.|....+...+++|||| |++++|+|.+||||||+.++|.|++- ....
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 4567776555433344679999999 89999999999999999999999872 1111
Q ss_pred --------ccccccccc-cc-chh---H-----------------------HHhhhCCCCC---CccCCccchHHHHHH-
Q 003687 533 --------GLMVPAESA-SI-PYF---D-----------------------AIMLHMKSYD---SPADGKSSFQVEMSE- 572 (803)
Q Consensus 533 --------G~~Vpa~~a-~i-~~~---d-----------------------~I~~~ig~~d---~l~~~~stfs~em~~- 572 (803)
..+++|+.. .+ |.. + .++..++..+ .+......||++|+|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 112333320 01 100 1 1222223322 123345678889987
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Ccccc
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
+..+++.+.+|+|||.||||++||...+..++ .+++.+. +.|.++||+|||+.++. ++++.
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl-~Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQIL-DLLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 66778889999999999999999999999997 7777775 47999999999999764 45443
No 292
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.6e-16 Score=163.55 Aligned_cols=153 Identities=21% Similarity=0.323 Sum_probs=100.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G--------------- 533 (803)
.+.++|++..| ++..+++++|| |++++|+||||||||||+|+|+|+.... ..|
T Consensus 7 ~l~~~nl~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 7 AIKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred eEEEeeEEEEe----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 47788887665 23468999998 8999999999999999999999986321 111
Q ss_pred --------ccccccccccc--hhHHHh----------------------hhCCCCC----CccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i~--~~d~I~----------------------~~ig~~d----~l~~~~stfs~em~~-l~~i 576 (803)
.++++....++ ..+++. ..++..+ ........++.++++ +..+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 12232221111 111111 0111110 112223456666655 5556
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Ccccc
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKI 634 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~~ 634 (803)
.+.+.+|+++||||||+|+|+.....+. .++..++ +.|.|+|++||+++.+. ++++.
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i 221 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDFT 221 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCEE
Confidence 6678999999999999999999888876 6666664 35899999999998764 44443
No 293
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.8e-16 Score=164.78 Aligned_cols=147 Identities=18% Similarity=0.281 Sum_probs=98.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----hcc---------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICG--------------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G--------------- 533 (803)
.+.+++++..| +++.++++++| |++++|+|+||||||||+|+|+|+.... ..|
T Consensus 7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 7 AIKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred eEEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 47778887655 24579999998 8999999999999999999999975321 012
Q ss_pred --------cccccccccc--chhHHH----------------------hhhCCCC----CCccCCccchHHHHHH-HHHH
Q 003687 534 --------LMVPAESASI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSE-IRSI 576 (803)
Q Consensus 534 --------~~Vpa~~a~i--~~~d~I----------------------~~~ig~~----d~l~~~~stfs~em~~-l~~i 576 (803)
.++|++...+ ...+++ +..++.. +........++.++++ +..+
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 1223322111 111111 1111211 1112223456666655 5666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 577 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.+.+.+|+++||||||+|+|+.....+. .++..+.+ +.|+|++||+++...
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~i~ 213 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRS-ELTIAIVTHNMQQAT 213 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHH
Confidence 6778999999999999999999888776 66666655 689999999998764
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.66 E-value=1.6e-16 Score=164.07 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=88.0
Q ss_pred eccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc-------ccc--cccccc---chhHHHh--hh-----
Q 003687 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-------MVP--AESASI---PYFDAIM--LH----- 552 (803)
Q Consensus 496 VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~-------~Vp--a~~a~i---~~~d~I~--~~----- 552 (803)
|++|+|| |++++|+||||||||||+|+|+|+.... .|. .++ .....+ ...+++. ..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 6788888 8999999999999999999999986321 121 111 111111 1111111 00
Q ss_pred -----------CCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEE
Q 003687 553 -----------MKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 620 (803)
Q Consensus 553 -----------ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~ 620 (803)
++..+........++.++++ +..+.+.+.+|+++|+|||++++|+.....+...+.+.++ +.++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~ 158 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIV 158 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEE
Confidence 11111112233456666665 5567777899999999999999999988887755555554 357999
Q ss_pred EccChhhhh-Ccccc
Q 003687 621 STHLHGIFS-LPLKI 634 (803)
Q Consensus 621 sTH~~eL~~-~~~~~ 634 (803)
+||+++... ++++.
T Consensus 159 vsH~~~~~~~~~d~i 173 (213)
T PRK15177 159 LTHNPRLIKEHCHAF 173 (213)
T ss_pred EECCHHHHHHhcCee
Confidence 999998764 45443
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=4.4e-16 Score=182.31 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hcccccccccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI 543 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a~i 543 (803)
.+.++|++..| .+++.+++|+|| |++++|+||||||||||||+|+|+.... ....++|++....
T Consensus 6 ~l~i~~l~~~y---~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 6 IYTMNRVSKVV---PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEeeEEEEe---CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 36778887665 224689999999 8999999999999999999999986221 1123556553222
Q ss_pred ---chhHHHh---------------------------------------------------------hhCCCCCCccCCc
Q 003687 544 ---PYFDAIM---------------------------------------------------------LHMKSYDSPADGK 563 (803)
Q Consensus 544 ---~~~d~I~---------------------------------------------------------~~ig~~d~l~~~~ 563 (803)
...+.+. ..++.. ......
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~ 161 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKV 161 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCch
Confidence 1112111 111111 123345
Q ss_pred cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 564 SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 564 stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+.+|.++++ +..+.+.+.+|+++||||||+|||+.....+. .+++.+ +.++|++||+.+++.
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiisHd~~~~~ 224 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY---PGTVVAVTHDRYFLD 224 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC---CCeEEEEeCCHHHHH
Confidence 677777765 56667778999999999999999999877665 444443 459999999998765
No 296
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.66 E-value=7.2e-16 Score=172.50 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=114.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hccc-------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGL------------- 534 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G~------------- 534 (803)
.++++++++.| ++..+.++||| |++.+|+|.||+||||||+++.|+.... ..|.
T Consensus 4 ~l~~~~itK~f----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 4 ALEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred eEEEeccEEEc----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 47888999887 36788899998 8999999999999999999999987211 1111
Q ss_pred ---cccccccccchh---------------------------HHHhhhCCCCCCccCCccchHHHHHHHHHHHH-hCCCC
Q 003687 535 ---MVPAESASIPYF---------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATTSR 583 (803)
Q Consensus 535 ---~Vpa~~a~i~~~---------------------------d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa-~a~~p 583 (803)
.|.|+...++.+ ..+..++|..=++....+..+.+++|...|+. ...++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 222222211111 11222233333333344556667777666665 47999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~~m 642 (803)
++|||||||+-|.|.+...++ .+++.+++.|++|||+||-++.+ +.+++...+..+++
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf-~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE
Confidence 999999999999999999997 89999999999999999998665 55666555555544
No 297
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=8.5e-16 Score=161.71 Aligned_cols=147 Identities=20% Similarity=0.306 Sum_probs=96.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--h--hhc-----------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L--GIC----------------- 532 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--l--aq~----------------- 532 (803)
+.+++++..| +++.++++++| |++++|+||||||||||+|+|+|+.. . ...
T Consensus 4 l~~~~v~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 4 IEVENLNTYF----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEeEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 5667776554 24579999998 89999999999999999999999742 1 011
Q ss_pred ------cccccccccccc--hhHHHh----------------------hhCCCCC----CccCCccchHHHHHH-HHHHH
Q 003687 533 ------GLMVPAESASIP--YFDAIM----------------------LHMKSYD----SPADGKSSFQVEMSE-IRSIV 577 (803)
Q Consensus 533 ------G~~Vpa~~a~i~--~~d~I~----------------------~~ig~~d----~l~~~~stfs~em~~-l~~iL 577 (803)
..++|++...++ ..+++. ..++..+ ........++.++++ +..+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 123333322111 111111 0111100 011223345555554 55566
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+.+.+|+++|||||++|+|+.....+. .++..+++ +.++|++||+.+....
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIE-DLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEECCHHHHHh
Confidence 678999999999999999999888876 66666654 7899999999987643
No 298
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.5e-16 Score=163.88 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=99.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh----hhc----------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC---------------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----aq~---------------- 532 (803)
++.+++++..| ++..++++++| |++++|+||||||||||+|+|+|+... ...
T Consensus 8 ~~~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 8 VMDCKLDKIFY----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred eEEEEeEEEEe----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 45666665554 35679999999 899999999999999999999998531 011
Q ss_pred -------ccccccccccc--chhHHH--------------------hhhCCCCCC----ccCCccchHHHHHH-HHHHHH
Q 003687 533 -------GLMVPAESASI--PYFDAI--------------------MLHMKSYDS----PADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 533 -------G~~Vpa~~a~i--~~~d~I--------------------~~~ig~~d~----l~~~~stfs~em~~-l~~iLa 578 (803)
..++|++...+ ...+++ +..++.... .......++.++++ +..+.+
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 12333332111 111111 111121111 11223456666655 556667
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~ 633 (803)
.+.+|+++||||||+|||+.....+. .+++.+.+ +.++|++||+++.+ .++++
T Consensus 164 l~~~p~llllDEPtsgLD~~~~~~l~-~~l~~~~~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 164 IATEPEVLLLDEPCSALDPIATRRVE-ELMVELKK-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 78999999999999999999888886 66666654 78999999999865 34443
No 299
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=4.1e-16 Score=166.08 Aligned_cols=146 Identities=15% Similarity=0.088 Sum_probs=107.6
Q ss_pred eeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------------------------hhccccccccccccchh
Q 003687 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIPYF 546 (803)
Q Consensus 495 ~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------------------------aq~G~~Vpa~~a~i~~~ 546 (803)
.-++|+|| |+|++|+|-+|||||||+|++.+++.. .+.-..|++..+.+|+.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 34577777 899999999999999999999999611 12233455555555542
Q ss_pred H------------------------HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 003687 547 D------------------------AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 547 d------------------------~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~ 601 (803)
. ..+...|..+.-......+|.+|+| .-.+.+.+++|+++|+|||||.|||--+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 1 2334445555555566778889987 44566778999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhh-hCcccccccccc
Q 003687 602 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 640 (803)
Q Consensus 602 ~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~~~~v~~~ 640 (803)
.+-..+++.-++.++||+|+|||++.+ .+.++...+..+
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 998888887788899999999999886 344443333333
No 300
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.3e-16 Score=184.33 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=97.7
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hcc----ccccccc----
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICG----LMVPAES---- 540 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G----~~Vpa~~---- 540 (803)
|.++|+++.| +++.+++++|| |++++|+||||||||||||+|+|+.... ..| .++++..
T Consensus 2 i~i~nls~~~----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 2 IVFSSLQIRR----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred EEEEEEEEEe----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 4567777665 45789999999 8999999999999999999999985211 011 1222211
Q ss_pred ----cccch------------------------------------------hHHHhhhCCCC-CCccCCccchHHHHHH-
Q 003687 541 ----ASIPY------------------------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSE- 572 (803)
Q Consensus 541 ----a~i~~------------------------------------------~d~I~~~ig~~-d~l~~~~stfs~em~~- 572 (803)
..+.. ...++..+|.. +......+++|.++++
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 00000 01122333332 2334456778888776
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+..+.+.+.+|+++||||||++||+.....+. +.+.+.+.++|++|||.++..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~----~~L~~~~~tviivsHd~~~l~ 210 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLE----KWLKSYQGTLILISHDRDFLD 210 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHH----HHHHhCCCeEEEEeCCHHHHH
Confidence 55566678999999999999999998766554 334444679999999998764
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6e-16 Score=180.04 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=102.3
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hcccccccccc-
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESA- 541 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a- 541 (803)
..+.++|+++.| +++.+++++|| |++++|+||||||||||+|+|+|+.... ....|+|+...
T Consensus 318 ~~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 393 (530)
T PRK15064 318 NALEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAY 393 (530)
T ss_pred ceEEEEeeEEee----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccc
Confidence 358888988765 34579999998 8999999999999999999999986211 11234555421
Q ss_pred -c---cchhH----------------HHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 542 -S---IPYFD----------------AIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 542 -~---i~~~d----------------~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
. +...+ .++..++.. +........+|.++++ +..+.+.+.+|+++||||||+|||+..
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 473 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1 11111 122333332 2334455677877766 556667789999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 600 g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
...+. .+++.+ +.++|++||+.+++.
T Consensus 474 ~~~l~-~~l~~~---~~tvi~vsHd~~~~~ 499 (530)
T PRK15064 474 IESLN-MALEKY---EGTLIFVSHDREFVS 499 (530)
T ss_pred HHHHH-HHHHHC---CCEEEEEeCCHHHHH
Confidence 77776 444443 569999999998765
No 302
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=7.6e-16 Score=154.63 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cc----------ccccccccccchhH-------
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----------LMVPAESASIPYFD------- 547 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G----------~~Vpa~~a~i~~~d------- 547 (803)
..++.|+|+ |++++++||+||||||||+.++|++...+ .| ..|.++.+.+|+.+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 458999998 89999999999999999999999973321 11 12445555555542
Q ss_pred -----------------HHhhhCCCCCCccCCccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 003687 548 -----------------AIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 548 -----------------~I~~~ig~~d~l~~~~stfs~em~~l-~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe 609 (803)
+++...|..+.-......+|.+|++. -.+.+.+.+|++++||||+..+|.-.+..+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 22333455544455556778888874 445566899999999999999999999999888888
Q ss_pred HHHhcCCEEEEEccChhhhhC
Q 003687 610 TLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 610 ~L~~~g~tvI~sTH~~eL~~~ 630 (803)
..++.|+.++++||+.+.+-+
T Consensus 178 lw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHh
Confidence 889999999999999998753
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=181.14 Aligned_cols=166 Identities=13% Similarity=0.140 Sum_probs=115.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------- 529 (803)
.+.++|++..|....+...++++++| |++++|+||||||||||+|+|+|+...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 36778887665321223579999998 899999999999999999999999611
Q ss_pred -hhccccccccccccch---hHH---------------------HhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 530 -GICGLMVPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 530 -aq~G~~Vpa~~a~i~~---~d~---------------------I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
.+...++++....++. .++ ++..++..+........++.++++ +..+.+.+.+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1122355554432221 111 222233333334445667777665 55666678999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
+++|||||++|||+.....+. .+++.+++.|.++|++||+.+....+++...+.++.+.
T Consensus 164 ~lLllDEP~~gLD~~s~~~l~-~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 164 QVILADEPTGALDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred CEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999888886 77777777799999999999988766655555555554
No 304
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.3e-15 Score=154.87 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=96.1
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhccccccccccccchh-
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIPYF- 546 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~G~~Vpa~~a~i~~~- 546 (803)
.++.++++++| |++.+|+||||+|||||||.++|-.. +++.-..+|+....-+.|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 47889999998 89999999999999999999999651 111111223222110101
Q ss_pred -HH------------------------HhhhCCCCCCccCCccchHHHHHH---HHHHHHhC----CCCcEEEEeCCCCC
Q 003687 547 -DA------------------------IMLHMKSYDSPADGKSSFQVEMSE---IRSIVTAT----TSRSLVLIDEICRG 594 (803)
Q Consensus 547 -d~------------------------I~~~ig~~d~l~~~~stfs~em~~---l~~iLa~a----~~psLlLLDEP~sG 594 (803)
.. .+...+..........++|.+.++ ++..++.. .++..++|||||++
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 01 111111100001111233433332 45566664 34469999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeE
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
||......++ .+.+.+.+.|..|+.+-||++++. ++++..-+..+++.
T Consensus 172 LDi~HQ~~tl-~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 172 LDIAHQHHTL-RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred cchHHHHHHH-HHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 9999999887 888999888999999999999985 55554444444443
No 305
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.64 E-value=3.7e-16 Score=182.74 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=98.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hcccccccccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI 543 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a~i 543 (803)
.+.++|++..| .+++.+++|+|| |++++|+||||||||||||+|+|+.... ....++|+.....
T Consensus 4 ~i~~~nls~~~---~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 4 IYTMNRVSKVV---PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEeeEEEec---CCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 36777887665 224679999998 8999999999999999999999986211 1123555543221
Q ss_pred ---chhHHHh---------------------------------------------------------hhCCCCCCccCCc
Q 003687 544 ---PYFDAIM---------------------------------------------------------LHMKSYDSPADGK 563 (803)
Q Consensus 544 ---~~~d~I~---------------------------------------------------------~~ig~~d~l~~~~ 563 (803)
...+.+. ..++.. ......
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 159 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADV 159 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCch
Confidence 1111111 001110 122344
Q ss_pred cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 564 SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 564 stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+.+|.++++ +..+.+.+.+|+++||||||++||+.....+. .++.. .+.++|++||+.++..
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L~~---~~~tvIiisHd~~~~~ 222 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE-QHLQE---YPGTVVAVTHDRYFLD 222 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHH-HHHHh---CCCeEEEEeCCHHHHH
Confidence 567777766 55666778999999999999999999877765 44433 3469999999998765
No 306
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=8.5e-16 Score=182.58 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=102.8
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hccccccccc
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAES 540 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~ 540 (803)
+...+.+++++..| +++.+++|++| |++++|+||||||||||||+|+|+.... ....|+++..
T Consensus 309 ~~~~l~~~~l~~~y----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 309 PNPLLKMEKVSAGY----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred CCceEEEEeeEEEe----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 34457888887665 35679999998 8999999999999999999999986211 0112444432
Q ss_pred -cccc----hh---------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 003687 541 -ASIP----YF---------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETA 598 (803)
Q Consensus 541 -a~i~----~~---------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~ 598 (803)
..+. .. ..++..++.. +......+.+|.++++ +..+.+.+.+|+++||||||+|||+.
T Consensus 385 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~ 464 (638)
T PRK10636 385 LEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464 (638)
T ss_pred hhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 1110 01 1233334443 2334455677777765 56666778999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 599 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 599 ~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
....+. .++..+ +.|+|++|||.+++.
T Consensus 465 ~~~~l~-~~L~~~---~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 465 MRQALT-EALIDF---EGALVVVSHDRHLLR 491 (638)
T ss_pred HHHHHH-HHHHHc---CCeEEEEeCCHHHHH
Confidence 887776 444444 349999999998764
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=174.63 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=119.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
-++++|+...|....+...+++|||| |++++|+|.+||||||+.++|.|+.-..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 47788887666444333479999999 8999999999999999999999986211
Q ss_pred ------hcccccccccc-ccch--------------------------hHHHhhhCCCCCCccC--CccchHHHHHH-HH
Q 003687 531 ------ICGLMVPAESA-SIPY--------------------------FDAIMLHMKSYDSPAD--GKSSFQVEMSE-IR 574 (803)
Q Consensus 531 ------q~G~~Vpa~~a-~i~~--------------------------~d~I~~~ig~~d~l~~--~~stfs~em~~-l~ 574 (803)
....++|++.. .+.. ...++..++..+.... ....+|++|+| +.
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 11224444421 1110 0124455566555444 66788999887 56
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-CcccccccccceeE
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 643 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~ 643 (803)
.+++.+.+|+|+|+||||++||+..+..|. .+++.+ .+.|.++||+|||++... ++++...+..+.+.
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL-~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQIL-DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHH-HHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 677889999999999999999999999998 555665 578999999999999874 55554444444443
No 308
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.63 E-value=1.8e-15 Score=176.68 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=108.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.++++|++..| .+++++++|+|| |+.++|+||||||||||+|+|+|+... .+.
T Consensus 322 ~i~~~~v~f~y---~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAY---QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEe---CCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 48888887655 234579999999 899999999999999999999998621 111
Q ss_pred cccccccccccc-------------hhHHHhhhCCCCCCccCC-----ccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 003687 533 GLMVPAESASIP-------------YFDAIMLHMKSYDSPADG-----KSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 533 G~~Vpa~~a~i~-------------~~d~I~~~ig~~d~l~~~-----~stfs~em~~-l~~iLa~a~~psLlLLDEP~s 593 (803)
..++|++...+. ........++..+....+ -..+|.+.++ ++.+.+.+.+|+++||||||+
T Consensus 399 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred eEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 224444321110 011122233333222111 1356666544 677777799999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
++|+.....+...+.+.+++.++|+|++||+.+....+++...+.++
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 525 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNG 525 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECC
Confidence 99999888887666655555689999999999887766654444333
No 309
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=166.32 Aligned_cols=163 Identities=16% Similarity=0.201 Sum_probs=108.7
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------h--------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G-------------- 530 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------a-------------- 530 (803)
..+.+++++..|. .+...++++++| |++++|+|||||||||||++|+|+... .
T Consensus 79 ~~i~~~nls~~y~--~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYM--NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEec--CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4688889887663 134579999999 899999999999999999999998632 0
Q ss_pred ------hcccccccccccc--chhHHHh----------------------hhCCCC----CCccCCccchHHHHHH-HHH
Q 003687 531 ------ICGLMVPAESASI--PYFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 531 ------q~G~~Vpa~~a~i--~~~d~I~----------------------~~ig~~----d~l~~~~stfs~em~~-l~~ 575 (803)
....++|+....+ ...+++. ...+.. ..+......+|.+.++ +..
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1122344432111 1111211 111111 1122334556766655 556
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ ++|+|++||+++.+. .+++...+..+.+
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~-~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIE-ELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 66678999999999999999999888865 66677765 699999999998864 3665444444433
No 310
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=4.9e-16 Score=162.81 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=102.6
Q ss_pred eeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh----ccccccccc--cc-------cch----------h-
Q 003687 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI----CGLMVPAES--AS-------IPY----------F- 546 (803)
Q Consensus 495 ~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq----~G~~Vpa~~--a~-------i~~----------~- 546 (803)
.+..|+|| |++++++||||+||||+||++.|++.... .+.++|... .+ +++ .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 46788988 89999999999999999999999974321 223334321 00 000 0
Q ss_pred --------------------HHHhhhCCCCCCccCCccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 003687 547 --------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 547 --------------------d~I~~~ig~~d~l~~~~stfs~em~~l~~-iLa~a~~psLlLLDEP~sGLD~~~g~~L~~ 605 (803)
+.+..-++....+.......|.+.+..+. +.+...+|++++|||||-|||...+..+..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 00111122333333334455555444333 445589999999999999999999999986
Q ss_pred HHHHHHHhcCCEEEEEccChh-hhhCcccccccccceeEEE
Q 003687 606 SIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 606 ~ILe~L~~~g~tvI~sTH~~e-L~~~~~~~~~v~~~~m~~~ 645 (803)
.+-++-.+.++||+.+||+.+ ++.++++.-.+..+.+.++
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 666666788999999999984 6677777766667766654
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=99.63 E-value=7.6e-16 Score=183.31 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=102.7
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh------------------hccccccccccccc---hhH
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YFD 547 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~Vpa~~a~i~---~~d 547 (803)
++.+++|+|+ |++++|+||||||||||||+|+|..... +...+++++...++ ..+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 5689999998 8999999999999999999999985211 11234554432221 111
Q ss_pred ------------------------HHhhhCCCCCCc-----cCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 548 ------------------------AIMLHMKSYDSP-----ADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 548 ------------------------~I~~~ig~~d~l-----~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
.++..++..+.. ......++.++++ +..+.+.+.+|+++||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 122222332211 0112346666554 6667777999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChh--hhhCcccccccccceeEE
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~e--L~~~~~~~~~v~~~~m~~ 644 (803)
.....+. .+++.+.+.|.|+|++||+++ +.+.+++...+..+++..
T Consensus 240 ~~~~~l~-~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~ 287 (659)
T PLN03211 240 TAAYRLV-LTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287 (659)
T ss_pred HHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence 9888886 677777777999999999985 456666554444554443
No 312
>PRK13409 putative ATPase RIL; Provisional
Probab=99.62 E-value=2.1e-15 Score=177.43 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=96.7
Q ss_pred CceeccccCC---CceEEEEecCCCChhHHHHHHHhhHhhh----------------hccc-----------------cc
Q 003687 493 GSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGL-----------------MV 536 (803)
Q Consensus 493 ~~~VlndIsL---Geii~ItGPNGsGKSTLLR~Iagl~~la----------------q~G~-----------------~V 536 (803)
+.+++++++. |++++|+||||+|||||||+|+|+.... ..|. +.
T Consensus 86 ~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred CceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 3578888887 8999999999999999999999986211 1111 01
Q ss_pred cccccccc------------------hhHHHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 537 PAESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 537 pa~~a~i~------------------~~d~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
++.....+ ..+.++..++...........+|.++++ +..+.+.+.+|+++||||||++||+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 11100111 0122334455544445566778887766 5566677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.....+. .+++.+.+ |.++|++||+++...
T Consensus 246 ~~~~~l~-~~i~~l~~-g~tvIivsHd~~~l~ 275 (590)
T PRK13409 246 RQRLNVA-RLIRELAE-GKYVLVVEHDLAVLD 275 (590)
T ss_pred HHHHHHH-HHHHHHHC-CCEEEEEeCCHHHHH
Confidence 9888886 77777877 999999999998764
No 313
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.61 E-value=2.8e-15 Score=174.90 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=106.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~ 532 (803)
.+.++|++..|. .+++.+++|+++ |+.++|+||||||||||+|+++|+.... +.
T Consensus 316 ~i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPP--GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 488888876552 224579999999 8999999999999999999999986211 12
Q ss_pred cccccccccccc--hhHHHh------------------------hhC--CCCCCccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAIM------------------------LHM--KSYDSPADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~------------------------~~i--g~~d~l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
..++|++...++ ..+++. ..+ |....+..+-..+|.+.+ +++.+.+.+.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 234555432211 111111 111 111111222344566554 477777779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
+++||||||+++|+.....+. ..+..+...++|+|++||+.+....+++...+.+
T Consensus 474 ~ililDEpts~LD~~~~~~i~-~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALA-NAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred CEEEEeCCccccCHHHHHHHH-HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999888776 5555555568999999999987766554433333
No 314
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.2e-15 Score=153.56 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=100.4
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccccccc--------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAES-------- 540 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa~~-------- 540 (803)
+.++++++.| +++.|++++|+ |.++.|+||||+||||||.+++.+..+.. .|..+....
T Consensus 2 I~i~nv~K~y----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSY----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhh----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4667888776 57899999998 89999999999999999999999873221 111111100
Q ss_pred cccchhHHHhhhCCCCCCccC---------------------------------CccchHHHHHHHHH-HHHhCCCCcEE
Q 003687 541 ASIPYFDAIMLHMKSYDSPAD---------------------------------GKSSFQVEMSEIRS-IVTATTSRSLV 586 (803)
Q Consensus 541 a~i~~~d~I~~~ig~~d~l~~---------------------------------~~stfs~em~~l~~-iLa~a~~psLl 586 (803)
+.+.+...+..++++.|-+.+ .+..++++.++.+. ++-.+++.+.+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 111222222233333332222 23344445444333 33348999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 587 LLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~ 629 (803)
+||||.++||.....+++ .+++.+ .+.|+|++++-||.+++.
T Consensus 158 lLDEPLNNLDmkHsv~iM-k~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIM-KILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred EecCcccccchHHHHHHH-HHHHHHHHHhCCeEEEEEecccHHH
Confidence 999999999999999997 666666 567999999999999985
No 315
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.2e-15 Score=153.76 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=102.6
Q ss_pred eEEEecccccccccCCC-ceeccccCC----CceEEEEecCCCChhHHHHHHHhhH----------------------hh
Q 003687 477 CLKMNGLSPYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------LL 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~-~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~----------------------~l 529 (803)
.++++|+|-.. .+ +.|++++|| |++.+|+||||||||||.++|+|.- -.
T Consensus 3 ~L~I~dLhv~v----~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER 78 (251)
T COG0396 3 MLEIKDLHVEV----EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 (251)
T ss_pred eeEEeeeEEEe----cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence 46778887543 34 599999999 8999999999999999999999973 23
Q ss_pred hhccccc-cccccccchh---H------------------------HHhhhCCCCCCc-cCC-ccchHHHHHHHHHHHHh
Q 003687 530 GICGLMV-PAESASIPYF---D------------------------AIMLHMKSYDSP-ADG-KSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 530 aq~G~~V-pa~~a~i~~~---d------------------------~I~~~ig~~d~l-~~~-~stfs~em~~l~~iLa~ 579 (803)
+..|.|+ .|.+..++-+ + .....++..+.. ... -..||.+-++...++..
T Consensus 79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 4455544 1222222111 0 111112222211 111 12467666665555554
Q ss_pred -CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 580 -TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 580 -a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
+.+|++.|||||-||||... ..+....++.+++.|..++++||+..+.++.
T Consensus 159 ~~lePkl~ILDE~DSGLDIda-lk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDA-LKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred HhcCCCEEEecCCCcCccHHH-HHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 78999999999999999965 4444588899999999999999999998764
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=2.4e-15 Score=175.90 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=102.6
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------h--cccccccccc-
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAESA- 541 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------q--~G~~Vpa~~a- 541 (803)
..+.+++++..| +++.+++++|| |++++|+||||||||||||+|+|+.... . ...|+|+...
T Consensus 321 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 321 KVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred eEEEEeeEEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 357888887665 34679999999 8999999999999999999999985211 0 1234555421
Q ss_pred cc---chhH-------------------HHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 542 SI---PYFD-------------------AIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 542 ~i---~~~d-------------------~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
.. ...+ .++..++..+ ......+++|.++++ +..+.+.+.+|+++||||||+|||+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 11 1111 2333344432 234455678887776 5667777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.....+. .++..+ +.++|++||+.+++.
T Consensus 477 ~~~~~l~-~~l~~~---~~~viivsHd~~~~~ 504 (552)
T TIGR03719 477 ETLRALE-EALLEF---AGCAVVISHDRWFLD 504 (552)
T ss_pred HHHHHHH-HHHHHC---CCeEEEEeCCHHHHH
Confidence 9887776 555544 248999999998764
No 317
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.1e-15 Score=158.74 Aligned_cols=154 Identities=15% Similarity=0.091 Sum_probs=110.1
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh---------------hhccccccccccc---------c
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESAS---------I 543 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l---------------aq~G~~Vpa~~a~---------i 543 (803)
...++|+|||| |+.++|+|+||||||||||+|+|+... .....+-|.-.+. +
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 34689999999 899999999999999999999998722 1122222221100 0
Q ss_pred c--------hhHHHhhhCCCCCCccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 003687 544 P--------YFDAIMLHMKSYDSPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 614 (803)
Q Consensus 544 ~--------~~d~I~~~ig~~d~l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~ 614 (803)
+ ..+.|...-...+.+..+..++|.+|. +++..++...+|+++|+||-.+--|+.-...-. ..++.+.++
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~ 196 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEK 196 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHc
Confidence 0 012233222345667778889999997 588888889999999999999999998766644 667777677
Q ss_pred CCEEEEEccChhhh-hCcccccccccceeEEEE
Q 003687 615 GCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 615 g~tvI~sTH~~eL~-~~~~~~~~v~~~~m~~~~ 646 (803)
+.|+|++||+++.. +++++...+..+.+.+..
T Consensus 197 ~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 89999999999876 456555555555555443
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.60 E-value=2.8e-15 Score=175.52 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=102.6
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------hh--ccccccccc-c
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI--CGLMVPAES-A 541 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------aq--~G~~Vpa~~-a 541 (803)
..+.+++++..| +++.+++|+|| |++++|+||||||||||+|+|+|+... .. ...|+|+.. .
T Consensus 323 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 323 KVIEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred eEEEEEeEEEEE----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 357888887665 34679999999 899999999999999999999998621 10 123555542 1
Q ss_pred cc---chhH-------------------HHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 542 SI---PYFD-------------------AIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 542 ~i---~~~d-------------------~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
.. ...+ .++..++..+ ......+.+|.++++ +..+.+.+.+|+++||||||+|||+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 11 1111 1223344432 234445678887766 5666777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.....+. .++..+ +.++|++||+.++..
T Consensus 479 ~~~~~l~-~~l~~~---~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 479 ETLRALE-EALLEF---PGCAVVISHDRWFLD 506 (556)
T ss_pred HHHHHHH-HHHHhC---CCeEEEEECCHHHHH
Confidence 9888876 555544 238999999998764
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=3.1e-15 Score=177.75 Aligned_cols=142 Identities=14% Similarity=0.194 Sum_probs=94.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cc----ccccccc----
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAES---- 540 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G----~~Vpa~~---- 540 (803)
+.++++++.| +++.+++|+|| |++++|+||||||||||||+|+|+..... .| .++++..
T Consensus 4 l~i~~ls~~~----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 4 ISIHGAWLSF----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEeeEEEEe----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 5677777665 34679999999 89999999999999999999999862110 01 1222211
Q ss_pred -cccch-----------------------------------------------------hHHHhhhCCCCCCccCCccch
Q 003687 541 -ASIPY-----------------------------------------------------FDAIMLHMKSYDSPADGKSSF 566 (803)
Q Consensus 541 -a~i~~-----------------------------------------------------~d~I~~~ig~~d~l~~~~stf 566 (803)
..+.. ...++..++.. .....+++
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~L 157 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSL 157 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhc
Confidence 00000 00111112221 12345677
Q ss_pred HHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 567 QVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 567 s~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
|.++++ +..+.+.+.+|+|+||||||++||+.....+. .++.. .+.++|++||+.++..
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~-~~L~~---~~~tvlivsHd~~~l~ 217 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE-GFLKT---FQGSIIFISHDRSFIR 217 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHh---CCCEEEEEeCCHHHHH
Confidence 887765 56666778999999999999999998876664 44443 3469999999998764
No 320
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.60 E-value=3.2e-15 Score=179.63 Aligned_cols=160 Identities=13% Similarity=0.149 Sum_probs=107.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.++++|++..|. ..++.+++|+|| |+.++|+||||||||||+|+|+|+.. +.+.
T Consensus 477 ~I~~~~vsf~y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYS--PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecC--CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 588888876552 124679999999 89999999999999999999999862 1223
Q ss_pred cccccccccccc--hhHHH---------------hhhCCCC-----------CCccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAI---------------MLHMKSY-----------DSPADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I---------------~~~ig~~-----------d~l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
..+||++...+. ..+++ ....+.. ..+..+-..+|.+.+ +++.+.+.+.+|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 345666542221 11111 1111111 111122234566554 477777779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+++||||||++||+.....+...+ .+.++|+|++||.++....+++.-.+..+.+
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l----~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i 689 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNL----RRRGCTCIIVAHRLSTIRDCDEIIVLERGKV 689 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHH----HhcCCEEEEEecCHHHHHhCCEEEEEeCCEE
Confidence 999999999999999877776443 3468999999999998877766544444443
No 321
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.60 E-value=4.1e-15 Score=175.06 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=106.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.+++++..| .+++.+++|+++ |+.++|+|+||||||||+|.|+|+... .+.
T Consensus 334 ~I~~~~vsf~y---~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSY---DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEe---CCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 48888887655 233569999999 899999999999999999999998621 123
Q ss_pred cccccccccccc--hhHHHh---------------hhCCCC-----------CCccCCccchHHHH-HHHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAIM---------------LHMKSY-----------DSPADGKSSFQVEM-SEIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~ig~~-----------d~l~~~~stfs~em-~~l~~iLa~a~~p 583 (803)
..++|++...+. ..+++. ...+.. ..+..+-..+|.+. ++++.+.+.+.+|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 345666543221 111111 111111 11112223456554 4577777779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
+++||||||++||+.....+. ..++.+. .++|+|++||+.+....+++.-.+.+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~-~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~ 544 (588)
T PRK13657 491 PILILDEATSALDVETEAKVK-AALDELM-KGRTTFIIAHRLSTVRNADRILVFDN 544 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHH-HHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEEC
Confidence 999999999999999888886 4444443 47999999999998877665443333
No 322
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.59 E-value=7.7e-15 Score=171.82 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=109.6
Q ss_pred ceEEEecccccccccCC-CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------
Q 003687 476 NCLKMNGLSPYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------- 530 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~-~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------- 530 (803)
..+.++|++..|....+ .+++++++|| |++++|+||||||||||+++|+|+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35888888766632111 2469999999 8999999999999999999999986211
Q ss_pred hcccccccccccc---------c-----hhHHHhhhCCCCCCcc---CC---ccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 531 ICGLMVPAESASI---------P-----YFDAIMLHMKSYDSPA---DG---KSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 531 q~G~~Vpa~~a~i---------~-----~~d~I~~~ig~~d~l~---~~---~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
..-.+++++...+ + .........+..+.+. .+ ...+|.+.++ ++.+.+.+.+|+++|||
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1112334332111 0 0011222333333221 11 1346665554 67777779999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
|||+++|+.....+...+++.++..+.|+|++||+.+....+++...+.++
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 999999999988887667766666789999999999877766654433333
No 323
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.59 E-value=1.6e-14 Score=172.13 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=111.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--------------------hhhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--------------------~laq~ 532 (803)
.+.++|++-.|. ..+..+++|+|+ |+.++|+|+||||||||+|++.|+. .+.+.
T Consensus 471 ~I~~~nvsf~y~--~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 471 EIEFENVSFRYG--PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred eEEEEEEEEEeC--CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 488888876552 233579999999 8999999999999999999999986 22334
Q ss_pred cccccccccccc--hh------------HHHhh--------------hCCCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YF------------DAIML--------------HMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~------------d~I~~--------------~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
-.+|+++...+. .. +++.. .+|..-.+..+-+.+|++.+| ++.+.+...+|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 445666542211 01 11111 112222223334556777665 66677779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
+++|||||||+||+.....+...+.+. . .|+|+|++||.+...+.+++...+..+.+.
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~-~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQI-L-QGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHH-h-cCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 999999999999998877776444333 2 369999999999998888765555555443
No 324
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=5.9e-15 Score=173.77 Aligned_cols=159 Identities=12% Similarity=0.159 Sum_probs=106.6
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq 531 (803)
+.+.+++++..| .+++.+++|+|| |+.++|+|+||||||||+|+|+|+... .+
T Consensus 339 ~~i~~~~v~f~y---~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 339 GRIDIDNVSFAY---RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred CeEEEEEEEEEe---CCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHh
Confidence 358888887555 234579999999 899999999999999999999998621 12
Q ss_pred ccccccccccccch--hHH--------------HhhhCCCCC-----------CccCCccchHHH-HHHHHHHHHhCCCC
Q 003687 532 CGLMVPAESASIPY--FDA--------------IMLHMKSYD-----------SPADGKSSFQVE-MSEIRSIVTATTSR 583 (803)
Q Consensus 532 ~G~~Vpa~~a~i~~--~d~--------------I~~~ig~~d-----------~l~~~~stfs~e-m~~l~~iLa~a~~p 583 (803)
...++|++...++. .++ .....+..+ .+...-..+|.+ .++++.+.+.+.+|
T Consensus 416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred heEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 23456665433211 111 111112111 111122345655 44577777778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
+++||||||+++|+.....+. ..++.+.+ ++|+|++||.++....+++.-.+..
T Consensus 496 ~illlDEpts~LD~~t~~~i~-~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQ-QALAAVRE-HTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHhC-CCEEEEEecchHHHHhCCEEEEEEC
Confidence 999999999999999888776 44444443 6899999999988776655433333
No 325
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.59 E-value=3.9e-15 Score=163.43 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred EEecCCCChhHHHHHHHhhHhhh------------------hccccccccccccc---hhH-------------------
Q 003687 508 LTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---YFD------------------- 547 (803)
Q Consensus 508 ItGPNGsGKSTLLR~Iagl~~la------------------q~G~~Vpa~~a~i~---~~d------------------- 547 (803)
|+||||||||||||+|+|+.... ....++++....++ ..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999986210 11224444432221 111
Q ss_pred --HHhhhCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEEEEcc
Q 003687 548 --AIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTH 623 (803)
Q Consensus 548 --~I~~~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI~sTH 623 (803)
.++..++..+........+|.++++ ++.+.+.+.+|+++|||||++|||+.....+. .+++.+. +.|.|+|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 1222334433334445667777765 56667778999999999999999999888886 5555554 45899999999
Q ss_pred Chhhh-hCccccccccccee
Q 003687 624 LHGIF-SLPLKIKNAAYKAM 642 (803)
Q Consensus 624 ~~eL~-~~~~~~~~v~~~~m 642 (803)
+.+.+ .++++...+.++.+
T Consensus 160 d~~e~~~~~d~i~vl~~G~i 179 (325)
T TIGR01187 160 DQEEAMTMSDRIAIMRKGKI 179 (325)
T ss_pred CHHHHHHhCCEEEEEECCEE
Confidence 99865 45555444444444
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=4e-15 Score=176.79 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=100.0
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------hh--ccccccccc
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI--CGLMVPAES 540 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------aq--~G~~Vpa~~ 540 (803)
+...+.++|++..| +++.++++++| |++++|+||||||||||||+|+|+... .. ...|+++..
T Consensus 316 ~~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 316 GKIVFEMENVNYQI----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CCceEEEeeeEEEE----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 33458888987665 34679999998 899999999999999999999998521 10 112445432
Q ss_pred c-c---cchhHHH-------------------hhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 003687 541 A-S---IPYFDAI-------------------MLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 541 a-~---i~~~d~I-------------------~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGL 595 (803)
. . ....+.+ +..++.. +........+|.++++ +..+.+.+.+|+++||||||+||
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~L 471 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL 471 (635)
T ss_pred cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1 1 1112221 2222221 1223344567777766 55566678999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
|+.....+. .+++. .+.++|++|||.+++.
T Consensus 472 D~~~~~~l~-~~l~~---~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 472 DVETLELLE-ELLDS---YQGTVLLVSHDRQFVD 501 (635)
T ss_pred CHHHHHHHH-HHHHh---CCCeEEEEECCHHHHH
Confidence 998866554 34433 3569999999998764
No 327
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.59 E-value=6.1e-15 Score=173.46 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=104.6
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~ 532 (803)
.++++|++..+. +++++++|+|| |+.++|+||||||||||++.|+|+. .. +.
T Consensus 349 ~i~~~~vsf~~~---~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~ 424 (588)
T PRK11174 349 TIEAEDLEILSP---DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH 424 (588)
T ss_pred eEEEEeeEEecc---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhh
Confidence 488888864332 34689999999 8999999999999999999999986 21 12
Q ss_pred cccccccccccc--hhHHH------------------------hhhC--CCCCCccCCccchHHHH-HHHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAI------------------------MLHM--KSYDSPADGKSSFQVEM-SEIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I------------------------~~~i--g~~d~l~~~~stfs~em-~~l~~iLa~a~~p 583 (803)
..+||++...+. ..++| ...+ |..-.+..+-..+|++. ++++.+.+.+.+|
T Consensus 425 i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 425 LSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred eEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 235555532211 11111 1111 11111112223456554 4577777889999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 638 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~ 638 (803)
+++||||||++||+.....+.. .++.+. ++.|+|++||.++....+++...+.
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~-~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQ-ALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHHHh-CCCEEEEEecChHHHHhCCEEEEEe
Confidence 9999999999999999888874 444443 4789999999998877666543333
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=1.1e-14 Score=142.31 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=107.0
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh----------------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------- 531 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq---------------------- 531 (803)
|.++|+...| +...++-||+| |+.+++.||+|+|||||+|.+..+.....
T Consensus 3 irv~~in~~y----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 3 IQLNGINCFY----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred eEEccccccc----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5677777665 45678999998 89999999999999999999988752111
Q ss_pred ----ccccccccccccchh-------------------------HHHhhhCCCCCCccCCccchHHHHH-HHHHHHHhCC
Q 003687 532 ----CGLMVPAESASIPYF-------------------------DAIMLHMKSYDSPADGKSSFQVEMS-EIRSIVTATT 581 (803)
Q Consensus 532 ----~G~~Vpa~~a~i~~~-------------------------d~I~~~ig~~d~l~~~~stfs~em~-~l~~iLa~a~ 581 (803)
.-..|.+.....|.. ..++.++...+......-.++.+.+ +.+.+.+.+.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc
Confidence 011111111111111 0122233333322222233444443 4566667789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC-cccccccccceeE
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAMG 643 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~-~~~~~~v~~~~m~ 643 (803)
+|.++|+||||+.|||+-...+. .|++++.+.|.|-+++||..+.+.. +.+...+.++++.
T Consensus 159 kpqvllfdeptaaldpeitaqvv-~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 159 EPQVLLFDEPTAALDPEITAQIV-SIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CCcEEeecCcccccCHHHHHHHH-HHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99999999999999999888886 8999999999999999999988753 3334444455544
No 329
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=8.9e-15 Score=152.56 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=58.1
Q ss_pred ccCCccchHHHHHH-HHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 559 PADGKSSFQVEMSE-IRSIVTATTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 559 l~~~~stfs~em~~-l~~iLa~a~~p--sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
.......++.++++ +..+.+.+.+| +++|+||||+|+|+.....+. .++..+++.|.++|++||+++....+++.
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~tii~itH~~~~~~~~d~i 208 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTVLVVEHDEDTIRAADHV 208 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEEeCHHHHHhCCEE
Confidence 44556678877766 55555566776 699999999999999988887 66666777799999999999887655443
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.59 E-value=6.1e-15 Score=176.86 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=101.0
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh---------ccccccccc-c
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAES-A 541 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq---------~G~~Vpa~~-a 541 (803)
..+.+++++..| .+++.+++++|| |++++|+||||||||||||+|+|+..... ...|+++.. .
T Consensus 507 ~~L~~~~ls~~y---~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~ 583 (718)
T PLN03073 507 PIISFSDASFGY---PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVD 583 (718)
T ss_pred ceEEEEeeEEEe---CCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccc
Confidence 357888887655 234578999998 89999999999999999999999862111 112344432 0
Q ss_pred ccc-------------------hhHHHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 542 SIP-------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 542 ~i~-------------------~~d~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
.+. ....++..++..+ ........+|.++++ +..+.+.+.+|+++||||||+|||+...
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~ 663 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV 663 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 000 0112334445442 234456778887766 5666677899999999999999999987
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 601 ~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
..+. +.+.+.+.++|++||+.+++.
T Consensus 664 ~~l~----~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 664 EALI----QGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred HHHH----HHHHHcCCEEEEEECCHHHHH
Confidence 6665 333332359999999998765
No 331
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.59 E-value=6.6e-15 Score=173.42 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=103.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..| .+++.++++++| |+.++|+||||||||||+++|+|+... .+.
T Consensus 334 ~i~~~~v~~~y---~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEF---ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred eEEEEEEEEEC---CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 48888887655 233568999998 899999999999999999999998621 112
Q ss_pred cccccccccccc--hhHHHh---------------hhCCC-----------CCCccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAIM---------------LHMKS-----------YDSPADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~ig~-----------~d~l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
..++|++...+. ..+++. ...+. ...+......+|.+.+ ++..+.+.+.+|
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 234555432211 111111 00011 1111122234565554 477777789999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
+++||||||++||+.....+. ..++.+. .+.|+|++||+.+....+++.
T Consensus 491 ~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~tvI~isH~~~~~~~~d~i 539 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVK-NAIDALR-KNRTTFIIAHRLSTVRNADLV 539 (585)
T ss_pred CEEEEECCccCCCHHHHHHHH-HHHHHHh-CCCEEEEEEcChHHHHcCCEE
Confidence 999999999999999888886 5555554 489999999999887665543
No 332
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.59 E-value=3.3e-14 Score=170.32 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=107.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.++++|++..|. ..++++++|+|| |+.++|+||||||||||+|+|+|+.. +.+.
T Consensus 451 ~I~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYR--PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcC--CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 588888876552 234689999999 89999999999999999999999862 1223
Q ss_pred cccccccccccc--hhHHH--------------hhhCCCCC-----------CccCCccchHHHHH-HHHHHHHhCCCCc
Q 003687 533 GLMVPAESASIP--YFDAI--------------MLHMKSYD-----------SPADGKSSFQVEMS-EIRSIVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I--------------~~~ig~~d-----------~l~~~~stfs~em~-~l~~iLa~a~~ps 584 (803)
..+||++...+. ..+++ ....+..+ .+..+-..+|.+.+ +++.+.+.+.+|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 345666543221 01111 11112111 11122244666554 4777777899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
++||||||+++|+.....+...+ .+.++|+|++||.++....+++.-.+.++.+
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L----~~~~~T~IiItHr~~~i~~~D~Iivl~~G~i 662 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESL----ERLKVTRIVIAHRLSTIRNADRIYVLDAGRV 662 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHH----HHhCCeEEEEecChHHHHcCCEEEEEECCEE
Confidence 99999999999999877776333 3336899999999998877765544444433
No 333
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.58 E-value=3.5e-14 Score=166.17 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=107.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++-.|. ..++++++++++ |+.++|+|+||+|||||+|.|+|+... .+.
T Consensus 330 ~i~~~~v~f~y~--~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcC--CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 588888875552 124579999999 899999999999999999999998621 122
Q ss_pred cccccccccccc--hhHH----------------HhhhCCCCC-----------CccCCccchHHHH-HHHHHHHHhCCC
Q 003687 533 GLMVPAESASIP--YFDA----------------IMLHMKSYD-----------SPADGKSSFQVEM-SEIRSIVTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~----------------I~~~ig~~d-----------~l~~~~stfs~em-~~l~~iLa~a~~ 582 (803)
-.++|++...+. ..++ .....+..+ .+...-..+|.+. ++++.+.+.+.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 345666542211 0111 111112111 1111223456554 457777778999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
|+++||||||+++|+.....+. ..+..+. .++|+|++||+.+....+++.-.+..+
T Consensus 488 ~~illLDEpts~LD~~~~~~i~-~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQ-AALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDG 543 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHH-HHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCC
Confidence 9999999999999999988886 4444443 478999999999888777655444333
No 334
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=5.6e-15 Score=173.60 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=107.0
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq 531 (803)
..+.++|++..|. .+++.+++|+|| |+.++|+||||||||||+|+|+|+... .+
T Consensus 337 ~~i~~~~v~f~y~--~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYP--DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECC--CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 3588888876552 123579999999 899999999999999999999998611 11
Q ss_pred ccccccccccccc--hhH---------------HHhhhCCCCCCccC----------CccchHHHHH-HHHHHHHhCCCC
Q 003687 532 CGLMVPAESASIP--YFD---------------AIMLHMKSYDSPAD----------GKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 532 ~G~~Vpa~~a~i~--~~d---------------~I~~~ig~~d~l~~----------~~stfs~em~-~l~~iLa~a~~p 583 (803)
...++|++...+. ..+ ......+..+.+.. +-..+|.+.+ +++.+.+.+.+|
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 2345665542211 011 11222232222211 2234565554 477777778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
+++||||||+++|+.....+.. .+..+. +++|+|++||.++....+++...+..
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~-~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILE-LLAEHA-QNKTVLMITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHc-CCCEEEEEecChhHHHhCCEEEEEeC
Confidence 9999999999999998888764 444444 47899999999988766654433333
No 335
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.58 E-value=3.6e-14 Score=166.68 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=105.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++-.|. .+++.+++++++ |+.++|+||||||||||+|+|+|+... .+.
T Consensus 341 ~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecC--CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 488888865441 123679999999 899999999999999999999998621 122
Q ss_pred cccccccccccch--hHHHh----------------hhCCCCC-----------CccCCccchHHHHH-HHHHHHHhCCC
Q 003687 533 GLMVPAESASIPY--FDAIM----------------LHMKSYD-----------SPADGKSSFQVEMS-EIRSIVTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~~--~d~I~----------------~~ig~~d-----------~l~~~~stfs~em~-~l~~iLa~a~~ 582 (803)
-.++|++...++. .+++. ...+..+ .+..+-..+|++.+ +++.+.+.+.+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 3456665422211 11111 1111111 01111134566554 47777777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 638 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~ 638 (803)
|+++||||||+++|+.....+...+ ..+. .++|+|++||+.+....+++.-.+.
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l-~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~ 552 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAAL-DELQ-KNRTSLVIAHRLSTIEKADEILVVE 552 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHH-HHHh-CCCEEEEEecchHHHHhCCEEEEEE
Confidence 9999999999999999888887444 4443 4799999999998887766543333
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.5e-15 Score=146.59 Aligned_cols=134 Identities=13% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cccccccc-----------------ccccch
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAE-----------------SASIPY 545 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa~-----------------~a~i~~ 545 (803)
++..++.+++| |+++.|+||||+|||||||+|+|+.-... .+..++.. ...+..
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 45688888888 89999999999999999999999972111 11111110 011111
Q ss_pred hH------------------HHhhhCCCCCCccCCccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHH
Q 003687 546 FD------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 606 (803)
Q Consensus 546 ~d------------------~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~-a~~psLlLLDEP~sGLD~~~g~~L~~~ 606 (803)
+. +.+..++..+........+|.++++...+.+. +..++|.|||||++++|.. +.++...
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~-g~a~l~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH-HHHHHHH
Confidence 11 11222333333333445667777665444433 7899999999999999997 5555567
Q ss_pred HHHHHHhcCCEEEEEccChh
Q 003687 607 IIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 607 ILe~L~~~g~tvI~sTH~~e 626 (803)
++.....+|-.||.+||..-
T Consensus 172 l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHhcCCCEEEEecCCcc
Confidence 77777788999999999753
No 337
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=8.3e-15 Score=175.69 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=106.9
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq 531 (803)
..+.++|++..|. .+.+++++|+|| |+.++|+||||||||||+|+|+|+... .+
T Consensus 462 ~~I~~~~vsf~Y~--~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYP--GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeC--CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 3588888876552 224579999999 899999999999999999999998621 12
Q ss_pred ccccccccccccc--hhHHH---------------hhhCCCCC-----------CccCCccchHHHHH-HHHHHHHhCCC
Q 003687 532 CGLMVPAESASIP--YFDAI---------------MLHMKSYD-----------SPADGKSSFQVEMS-EIRSIVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~--~~d~I---------------~~~ig~~d-----------~l~~~~stfs~em~-~l~~iLa~a~~ 582 (803)
...+||++...+. ..+++ ....+..+ .+...-..+|.+.+ +++.+.+.+.+
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 3345565532211 01111 11111111 11122235666554 46777777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
|+++||||||++||+.....+... +..+. .++|+|++||.++....+++.-.+..
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~-l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~ 674 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDR-LKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDN 674 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHHh-CCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 999999999999999988888644 44444 37999999999998777665443333
No 338
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.2e-14 Score=160.71 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=119.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH-------------------hhhhcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-------------------LLGICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~-------------------~laq~G 533 (803)
.|.++|+|-.| .+++.|++++|| |+-++|+|+|||||||++|+|..+. -+.+..
T Consensus 351 ~I~F~dV~f~y---~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSY---GPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEe---CCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 48999998665 356679999999 8999999999999999999999885 234555
Q ss_pred ccccccccccch--h------------H---HHhhhCCCCCCccCCc---c--------chH-HHHHHHHHHHHhCCCCc
Q 003687 534 LMVPAESASIPY--F------------D---AIMLHMKSYDSPADGK---S--------SFQ-VEMSEIRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~~--~------------d---~I~~~ig~~d~l~~~~---s--------tfs-~em~~l~~iLa~a~~ps 584 (803)
.+|||+...+.. + + ++..+.+..|.+.... + ..+ +|.++++.+.+.+.+|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 678887543311 0 1 1222333333332211 1 122 35666888888899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEE
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~ 645 (803)
++++|||||.||.+.-.++...+.. ...+.|+|++-|++++...+++...+.++.+...
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 9999999999999998888866666 3458999999999999988887766667666543
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=1e-14 Score=168.87 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=96.1
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh------hhc---cccccccccccc
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------GIC---GLMVPAESASIP 544 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l------aq~---G~~Vpa~~a~i~ 544 (803)
+.+.+++..| +++.+++++++ |+.++|+|+||+|||||||+|+|.... ... -.+++++...-+
T Consensus 4 i~~~~ls~~~----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 4 ITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred EEEeeeEEee----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 5667777655 67899999999 899999999999999999999998621 111 123333321110
Q ss_pred ---hh---------------------------------------------------HHHhhhCCCCCCccCCccchHHHH
Q 003687 545 ---YF---------------------------------------------------DAIMLHMKSYDSPADGKSSFQVEM 570 (803)
Q Consensus 545 ---~~---------------------------------------------------d~I~~~ig~~d~l~~~~stfs~em 570 (803)
.. ..++..++..+. ....+++|++.
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 00 012222333333 45567788776
Q ss_pred HH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 571 SE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 571 ~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+. +..+-+...+|+++||||||++||...-..+ -++|.+...++|++|||..+.+
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL----e~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH----HHHHHhCCCcEEEEeCCHHHHH
Confidence 54 4445556899999999999999999753333 2445444349999999998865
No 340
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.57 E-value=1.3e-14 Score=170.20 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=107.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------IC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~ 532 (803)
.+.++|++..|.. ..++.++++++| |+.++|+||||||||||+|+|+|+.... +.
T Consensus 337 ~i~~~~v~f~y~~-~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCC-CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 5888888755521 123679999999 8999999999999999999999986211 12
Q ss_pred cccccccccccc--hhHHHh---------------hhCC-----------CCCCccCCccchHHH-HHHHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAIM---------------LHMK-----------SYDSPADGKSSFQVE-MSEIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~---------------~~ig-----------~~d~l~~~~stfs~e-m~~l~~iLa~a~~p 583 (803)
..++|++...+. ..+++. ...+ ....+..+...+|.+ .++++.+.+.+.+|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 345666542221 111111 1111 111112223346654 45577777778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+++|+||||+++|+.....+. ..++.+. .++|+|++||+.+....+++.-.+.++.+
T Consensus 496 ~ililDEpts~lD~~~~~~i~-~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~ 552 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQ-QALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRI 552 (576)
T ss_pred CeEEEeCcccccCHHHHHHHH-HHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEE
Confidence 999999999999999877775 4445553 47999999999988777665544444433
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.57 E-value=9.6e-15 Score=174.25 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=101.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hcccccccccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASI 543 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a~i 543 (803)
.++++|++..| .+++.+++++|| |++++|+||||||||||+|+|+|+.... ....++|++....
T Consensus 451 ~i~~~nv~~~~---~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 451 GIKFENIPLVT---PNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred eEEEEeeEEEC---CCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 47888887644 234579999999 8999999999999999999999985211 1123556553211
Q ss_pred --chhHH----------------------HhhhCCCCCCccC---------CccchHHHHHH-HHHHHHhCCCCcEEEEe
Q 003687 544 --PYFDA----------------------IMLHMKSYDSPAD---------GKSSFQVEMSE-IRSIVTATTSRSLVLID 589 (803)
Q Consensus 544 --~~~d~----------------------I~~~ig~~d~l~~---------~~stfs~em~~-l~~iLa~a~~psLlLLD 589 (803)
...++ ++..++..+.+.. ....+|.++++ +..+.+.+.+|+++|||
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11111 2222232221111 12457776665 66677778999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 590 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 590 EP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
|||++||+.....+. +.+.+.|.|+|++||+.++...+++
T Consensus 608 Epts~LD~~~~~~l~----~~l~~~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 608 ECTSAVSVDVEGYMY----RLCREFGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred CCccCCCHHHHHHHH----HHHHHcCCEEEEEeCchHHHHhCCE
Confidence 999999998766654 3334458999999999998766543
No 342
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=1.5e-14 Score=173.47 Aligned_cols=161 Identities=12% Similarity=0.094 Sum_probs=107.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.+++++..|. .+++.+++++|| |+.++|+|+||||||||+|+|+|+... .+.
T Consensus 455 ~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYA--PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 588888875552 234579999999 899999999999999999999998621 122
Q ss_pred cccccccccccc--hhHHH---------------hhhCC-----------CCCCccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAI---------------MLHMK-----------SYDSPADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I---------------~~~ig-----------~~d~l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
..+||++...++ ..+++ ....+ ....+..+-..+|.+.+ +++.+.+.+.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 345665532211 01111 11111 11111222345666554 467777779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~ 641 (803)
+++||||||+++|+.....+.. .++.+. .++|+|++||+.+....+++.-.+.++.
T Consensus 613 ~ililDEpts~LD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMR-NMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCE
Confidence 9999999999999998888864 444443 5799999999998877666544444443
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.56 E-value=1.7e-14 Score=183.96 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=105.9
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---hh-----hcc-----------c
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG-----ICG-----------L 534 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---la-----q~G-----------~ 534 (803)
+.++|++..+....+++.+++|+|+ |++++|+|||||||||||++|+|... .. ..| .
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 5666765443211235689999999 89999999999999999999999863 11 011 2
Q ss_pred cccccccccc---hh------------------------HHHhhhCCCCCCccCCcc----chHHHHHH-HHHHHHhCCC
Q 003687 535 MVPAESASIP---YF------------------------DAIMLHMKSYDSPADGKS----SFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 535 ~Vpa~~a~i~---~~------------------------d~I~~~ig~~d~l~~~~s----tfs~em~~-l~~iLa~a~~ 582 (803)
+++++...++ .. +.++..++..+....... .++.++++ +..+.+.+.+
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 4444321111 00 112222232222221111 46666655 6667778899
Q ss_pred Cc-EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhh--hhCcccccccccc
Q 003687 583 RS-LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI--FSLPLKIKNAAYK 640 (803)
Q Consensus 583 ps-LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL--~~~~~~~~~v~~~ 640 (803)
|+ ++||||||+|||+.....+. .+++.+++.|.|||++||+++. ....++.-.+..+
T Consensus 920 P~~iLlLDEPTsgLD~~~~~~i~-~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 920 PKLLLFLDEPTSGLDSQTAWSIC-KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 96 99999999999999888886 7778887789999999999874 3455544334443
No 344
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.56 E-value=1.5e-14 Score=174.06 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=106.7
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq 531 (803)
..++++|++..|.. ..++++++|+|| |+.++|+|||||||||++|.|+|+... .+
T Consensus 477 ~~I~~~nVsf~Y~~-~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPN-RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCC-CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 35888888765521 124689999999 899999999999999999999998621 12
Q ss_pred ccccccccccccc--hhHHH---------------hhhCCCCC-----------CccCCccchHHHHH-HHHHHHHhCCC
Q 003687 532 CGLMVPAESASIP--YFDAI---------------MLHMKSYD-----------SPADGKSSFQVEMS-EIRSIVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~--~~d~I---------------~~~ig~~d-----------~l~~~~stfs~em~-~l~~iLa~a~~ 582 (803)
...++|++...+. ..+++ ....+..+ .+..+-..+|.+.+ +++.+.+.+.+
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2345666542221 11111 11111111 11122234565544 47777777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
|+++||||||+++|+.....+. . .....++|+|++||.++....+++...+.++.+
T Consensus 636 p~ILILDEpTSaLD~~te~~i~-~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~i 691 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQ-E---SRSRASRTVLLIAHRLSTVERADQILVLKKGSV 691 (711)
T ss_pred CCEEEEEccccccCHHHHHHHH-H---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEE
Confidence 9999999999999998766664 3 223357899999999998877765544444443
No 345
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.56 E-value=1.6e-14 Score=169.56 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=101.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.+++++..|. .+++.+++++|+ |+.++|+||||||||||+++|+|+... .+.
T Consensus 313 ~I~~~~v~~~y~--~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYP--QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECC--CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 477777764442 124579999999 899999999999999999999998621 112
Q ss_pred cccccccccccc--hhHHH---------------hhhCCCCCC-----------ccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAI---------------MLHMKSYDS-----------PADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I---------------~~~ig~~d~-----------l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
..++|++...+. ..+++ ....+..+. +..+...+|.+.+ +++.+.+.+.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 234555432211 01111 111111111 1112234565554 467777779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
+++||||||++||+.....+. ..++.+. .++|+|++||+.+....+++.
T Consensus 471 ~illlDEpts~LD~~~~~~i~-~~l~~~~-~~~tii~itH~~~~~~~~d~i 519 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQIL-HNLRQWG-EGRTVIISAHRLSALTEASEI 519 (569)
T ss_pred CEEEEECccccCCHHHHHHHH-HHHHHHh-CCCEEEEEecchhHHHcCCEE
Confidence 999999999999999888886 4445444 589999999999877665543
No 346
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.56 E-value=1.4e-14 Score=174.07 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=106.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.+.++|++..| ..++.+++|+|| |+.++|+||||||||||+|+|+|+.. +.+.
T Consensus 473 ~I~~~~vsf~y---~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSY---GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEc---CCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 58888887665 234679999999 89999999999999999999999862 1123
Q ss_pred cccccccccccc--hhHHHh----------------hhCCCCC-----------CccCCccchHHHHH-HHHHHHHhCCC
Q 003687 533 GLMVPAESASIP--YFDAIM----------------LHMKSYD-----------SPADGKSSFQVEMS-EIRSIVTATTS 582 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~----------------~~ig~~d-----------~l~~~~stfs~em~-~l~~iLa~a~~ 582 (803)
..+||++...+. ..+++. ...+..+ .+..+-..+|.+.+ +++.+.+.+.+
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 345666532211 011111 1111111 11122234566554 46767777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
|+++||||||+++|+.....+...+. .+ .++|+|++||..+....+++.-.+..+
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~-~~--~~~T~IiitHr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLL-NL--QDKTIIFVAHRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHH-Hh--cCCEEEEEecchHHHHcCCEEEEEECC
Confidence 99999999999999998777764444 33 478999999999988776655444333
No 347
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.55 E-value=1.7e-14 Score=171.05 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=105.2
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh--------------------hccccccccccccc---
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--- 544 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la--------------------q~G~~Vpa~~a~i~--- 544 (803)
+++.+++|+++ |++++|+|||||||||||++|+|..... +...|+|++...++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35789999999 8999999999999999999999975211 01134454432221
Q ss_pred h------------------------hHHHhhhCCCCCCccCCc------cchHHHH-HHHHHHHHhCCCCcEEEEeCCCC
Q 003687 545 Y------------------------FDAIMLHMKSYDSPADGK------SSFQVEM-SEIRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 545 ~------------------------~d~I~~~ig~~d~l~~~~------stfs~em-~~l~~iLa~a~~psLlLLDEP~s 593 (803)
. .+.++..++..+...... ..++.+. +++..+.+.+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1 122333333322111111 2355544 45777888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCEEEEEccChh--hhhCcccccccccceeEEE
Q 003687 594 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 594 GLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e--L~~~~~~~~~v~~~~m~~~ 645 (803)
|||+..+..+. ..++.+.+.|.|+|++||++. +.+..++...+..+++...
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 99999999887 666777777999999999974 5667776655556655544
No 348
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.55 E-value=9.6e-14 Score=161.36 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=103.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.+.++|++..|. .+.+++++|+|+ |+.++|+||||||||||+|+|+|+... .+.
T Consensus 320 ~i~~~~v~f~y~--~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYP--GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECC--CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 588888876652 123479999999 899999999999999999999998621 112
Q ss_pred cccccccccccc--hhHHH---------------hhhCCCCCC-----------ccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAI---------------MLHMKSYDS-----------PADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I---------------~~~ig~~d~-----------l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
..++|++...+. ..+++ ....+..+. +..+-..++.+.+| ++.+.+.+.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 345555532211 11111 111122111 11122346665554 66677779999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+++||||||+++|+.....+...+ ..+. .++|+|++||+++....+++
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEAL-RALA-QGRTVLLVTHRLALAERADR 525 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHH-HHhc-CCCEEEEEecCHHHHHhCCE
Confidence 999999999999999988886444 4443 58999999999988765543
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.55 E-value=1.2e-14 Score=174.33 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=96.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--hhhcc--cccccccc--c----
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LGICG--LMVPAESA--S---- 542 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--laq~G--~~Vpa~~a--~---- 542 (803)
.|.++|++..| +++.+++|+|| |++++|+||||||||||||+|+|... ....| .+++++.. .
T Consensus 177 ~I~i~nls~~y----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 177 DIHMENFSISV----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eEEEceEEEEe----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 47788887665 35679999999 89999999999999999999998531 11101 01121100 0
Q ss_pred --------------------cchh-----------------------------H-------------------HHhhhCC
Q 003687 543 --------------------IPYF-----------------------------D-------------------AIMLHMK 554 (803)
Q Consensus 543 --------------------i~~~-----------------------------d-------------------~I~~~ig 554 (803)
+++. . .++..++
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 0000 0 0111111
Q ss_pred CC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cc
Q 003687 555 SY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LP 631 (803)
Q Consensus 555 ~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~ 631 (803)
.. +.......++|.++++ +..+.+.+.+|+++||||||++||+.....+. .+ +.+.+.++|++||+.++.. .+
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~---L~~~~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE-TY---LLKWPKTFIVVSHAREFLNTVV 408 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HH---HHHcCCEEEEEECCHHHHHHhC
Confidence 11 1122334667777766 55566668999999999999999998766654 33 3444789999999998764 34
Q ss_pred ccc
Q 003687 632 LKI 634 (803)
Q Consensus 632 ~~~ 634 (803)
++.
T Consensus 409 d~i 411 (718)
T PLN03073 409 TDI 411 (718)
T ss_pred CEE
Confidence 443
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=2e-14 Score=151.77 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=110.5
Q ss_pred EEEecccccccccC---CC--ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhcccccccc--------c
Q 003687 478 LKMNGLSPYWFDAA---EG--SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE--------S 540 (803)
Q Consensus 478 i~l~~l~p~~~~~~---~~--~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~--------~ 540 (803)
++++|+.+.|.... .. ..+++|||| |++++|+|.|||||||+-|+|.++.-... |...... .
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~ 83 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKE 83 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchh
Confidence 56677776653211 12 478999999 89999999999999999999999874221 1111110 0
Q ss_pred cccchhHHHhhhCCCCC-CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCE
Q 003687 541 ASIPYFDAIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCL 617 (803)
Q Consensus 541 a~i~~~d~I~~~ig~~d-~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~t 617 (803)
........++..+|..+ ........|+++.+| +..+.+.+.+|+++++|||+|+||...+..+. .++..+. +.|.+
T Consensus 84 ~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt 162 (268)
T COG4608 84 ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLT 162 (268)
T ss_pred HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCe
Confidence 11122345666666544 345566778877655 67777789999999999999999999999987 6777775 56999
Q ss_pred EEEEccChhhhhCcc
Q 003687 618 GIVSTHLHGIFSLPL 632 (803)
Q Consensus 618 vI~sTH~~eL~~~~~ 632 (803)
.+|+|||+..+....
T Consensus 163 ~lFIsHDL~vv~~is 177 (268)
T COG4608 163 YLFISHDLSVVRYIS 177 (268)
T ss_pred EEEEEEEHHhhhhhc
Confidence 999999999887543
No 351
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.55 E-value=2.7e-14 Score=163.48 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=108.4
Q ss_pred ceEEEeccccccccc-------CCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-----hccc-----
Q 003687 476 NCLKMNGLSPYWFDA-------AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGL----- 534 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~-------~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-----q~G~----- 534 (803)
..+.++|+.+.|... .+...+++|||| |++++|+|++||||||+.|+|+|+.... ..|.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 346788998777421 123578999999 9999999999999999999999997221 1111
Q ss_pred ------------cccccc-ccc-c-------------------------hhHHHhhhCCCCCC-ccCCccchHHHHHH-H
Q 003687 535 ------------MVPAES-ASI-P-------------------------YFDAIMLHMKSYDS-PADGKSSFQVEMSE-I 573 (803)
Q Consensus 535 ------------~Vpa~~-a~i-~-------------------------~~d~I~~~ig~~d~-l~~~~stfs~em~~-l 573 (803)
.+.+.. +.+ | .++.++..++...+ .......||.+.++ +
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv 438 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV 438 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH
Confidence 111110 000 0 01223444444432 34455677776654 7
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+.+.+.+.+|++||+|||++.||+..+..+...+.+.-.+.|.|.||+|||+...+.
T Consensus 439 aIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495 (539)
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh
Confidence 778888999999999999999999999999855544446779999999999998764
No 352
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.55 E-value=9.6e-15 Score=179.16 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=128.8
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccc---------c
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV---------P 537 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~V---------p 537 (803)
+.+.+.++.+.|.. .+.+.+++++ |++.++.|||||||||++|++.|...... .|..+ .
T Consensus 563 ~~~~~~~L~k~y~~---~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG---KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecc---hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhh
Confidence 55677788776621 1117888888 89999999999999999999999863221 11111 1
Q ss_pred ccccccchhHHHhhhCCCCC-------------------------------CccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 538 AESASIPYFDAIMLHMKSYD-------------------------------SPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 538 a~~a~i~~~d~I~~~ig~~d-------------------------------~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
..-++.||+|.++..++..| ......++++.++++ +..+++.+.+|++
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 12345566555444443322 223334567777765 7788899999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-CcccccccccceeEEEEeCCcee----eeeEEeeC
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTV----PTWKLVDG 660 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m~~~~~~~~l~----~tYkL~~G 660 (803)
|+||||++|+||..+..+ |.+++.+++.|..+|++||.+++++ ++++...+.++++........++ -.|.+.-.
T Consensus 720 i~LDEPstGmDP~arr~l-W~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~ 798 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHL-WDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVR 798 (885)
T ss_pred EEecCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEE
Confidence 999999999999866665 7999999887779999999999985 67777777888877765444443 23555544
Q ss_pred CCC
Q 003687 661 ICR 663 (803)
Q Consensus 661 ~~~ 663 (803)
...
T Consensus 799 ~~~ 801 (885)
T KOG0059|consen 799 IKE 801 (885)
T ss_pred ECC
Confidence 433
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.54 E-value=3.1e-14 Score=145.68 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=79.9
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh--------------hcc------------cccccccccc------chhHHHh
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG--------------ICG------------LMVPAESASI------PYFDAIM 550 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la--------------q~G------------~~Vpa~~a~i------~~~d~I~ 550 (803)
| +++|+||||||||||+++|+++.-.. ..| .++++..... ...+.++
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l 101 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEII 101 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHH
Confidence 6 99999999999999999999885111 001 1222221111 0112223
Q ss_pred hhCCCCCCccCCccchHHHHHHHHH-HHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 551 LHMKSYDSPADGKSSFQVEMSEIRS-IVTA----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 551 ~~ig~~d~l~~~~stfs~em~~l~~-iLa~----a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
.. .+........++.++++... +.+. ..+|+++|+|||++|+|+.....+. .+++.+.+ +.++|++||++
T Consensus 102 ~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 102 EA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred hC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEEECCH
Confidence 22 22223344567777766333 3322 2567999999999999999888886 66776655 68999999999
Q ss_pred hhhhCcc
Q 003687 626 GIFSLPL 632 (803)
Q Consensus 626 eL~~~~~ 632 (803)
++...++
T Consensus 177 ~~~~~~d 183 (197)
T cd03278 177 GTMEAAD 183 (197)
T ss_pred HHHhhcc
Confidence 8765443
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=2.7e-14 Score=145.53 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=97.0
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccc---------------cccc-----cc
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMV---------------PAES-----AS 542 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~V---------------pa~~-----a~ 542 (803)
..+.+++++++ |+++.|+|.||||||||+++|+|-+.... .|..| .+.+ ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 45789999998 89999999999999999999999863211 11111 1110 00
Q ss_pred cchhHHH---------------------------hh--hCCCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCC
Q 003687 543 IPYFDAI---------------------------ML--HMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 592 (803)
Q Consensus 543 i~~~d~I---------------------------~~--~ig~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~ 592 (803)
+....++ +. ..|.+..+......+|.+.+| ++.+++-+.+|++++|||-|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 1111110 00 112233333344456666666 56677789999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh-hCccc
Q 003687 593 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLK 633 (803)
Q Consensus 593 sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~-~~~~~ 633 (803)
++|||..+..++...-+...+.+.|.+|+||+++.+ .+..+
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence 999999999888666666677889999999999875 34433
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.53 E-value=1.9e-13 Score=158.40 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=100.5
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------h--ccccccccc
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAES 540 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------q--~G~~Vpa~~ 540 (803)
+...+.++|+.+.| .+++.++.+++| |+.++|+||||+|||||||+|.|..-.. + ...|++++.
T Consensus 318 g~~vl~~~~~~~~y---~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~ 394 (530)
T COG0488 318 GKLVLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394 (530)
T ss_pred CCeeEEEecccccc---CCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehh
Confidence 45568888888765 334789999999 8999999999999999999997754211 1 112333332
Q ss_pred cccc----hh---------------HHHhhhCCCC-CCccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 003687 541 ASIP----YF---------------DAIMLHMKSY-DSPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 541 a~i~----~~---------------d~I~~~ig~~-d~l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~ 599 (803)
..+. .+ ...+.+++.. +.......++|++.+ ++..+.-.+.+|.++||||||+.||...
T Consensus 395 ~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s 474 (530)
T COG0488 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474 (530)
T ss_pred hhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHH
Confidence 1111 11 1223333332 222344456666544 3555555589999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 600 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 600 g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
..++. +.|.+...++|++|||..+.+.
T Consensus 475 ~~aLe----~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 475 LEALE----EALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHHH----HHHHhCCCeEEEEeCCHHHHHh
Confidence 55554 5556667899999999998753
No 356
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.53 E-value=4.5e-14 Score=164.12 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=97.0
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G 533 (803)
.++++|++..| .+++.+++|+|| |+.++|+||||||||||+|.|+|+.... +..
T Consensus 334 ~I~~~~vsf~Y---~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGY---PGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred eEEEEEEEEec---CCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 48888887555 334569999999 8999999999999999999999986211 123
Q ss_pred ccccccccccc--hhHHH---------------hhhCCCCCCc-----------cCCccchHHHH-HHHHHHHHhCCCCc
Q 003687 534 LMVPAESASIP--YFDAI---------------MLHMKSYDSP-----------ADGKSSFQVEM-SEIRSIVTATTSRS 584 (803)
Q Consensus 534 ~~Vpa~~a~i~--~~d~I---------------~~~ig~~d~l-----------~~~~stfs~em-~~l~~iLa~a~~ps 584 (803)
.+||++...+. ..+++ ....+..+.+ ..+-..+|++. ++++.+.+.+.+|+
T Consensus 411 ~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 411 SVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 46676643221 11111 1111111111 11123455554 45777778899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
++||||||+++|+.....+...+. .+ ..++|+|++||.+
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~-~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLL-AA-LSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH-Hh-cCCCEEEEEecCC
Confidence 999999999999998887764443 33 3478999999963
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.52 E-value=4.3e-14 Score=180.35 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=98.3
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------------------hccccccccccccc---hh
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP---YF 546 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------------------q~G~~Vpa~~a~i~---~~ 546 (803)
++.+++|+|+ |++++|+||||||||||||+|+|..... +...|+++....++ ..
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3579999998 8999999999999999999999974210 01123443321111 11
Q ss_pred H------------------------HHhhhCCCCCCccCC-----ccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCC
Q 003687 547 D------------------------AIMLHMKSYDSPADG-----KSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 547 d------------------------~I~~~ig~~d~l~~~-----~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD 596 (803)
+ .++..++..+..... ...++.++++ +..+.+.+.+|+++||||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 1 122222322211111 1356776665 666777899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEccChh--hhhCcccccccc
Q 003687 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAA 638 (803)
Q Consensus 597 ~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e--L~~~~~~~~~v~ 638 (803)
+..+..+. .+++.+++.|.|||++||+.+ +...+++.-.+.
T Consensus 1052 ~~~a~~v~-~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1052 ARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 99888886 777778888999999999986 345555544443
No 358
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.3e-13 Score=155.49 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=106.9
Q ss_pred eEEEe--cccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------h
Q 003687 477 CLKMN--GLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------G 530 (803)
Q Consensus 477 ~i~l~--~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------a 530 (803)
+++++ +++..| .+++++++|++| |+.++|+|+||||||||++.|+|+... .
T Consensus 318 ~~ei~~~~l~~~y---~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 318 PIEISLENLSFRY---PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CceeeecceEEec---CCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 45554 666544 455699999999 899999999999999999999998621 1
Q ss_pred hccccccccccccch--hH---------------HHhhhCCCCC----------CccCCccchHH-HHHHHHHHHHhCCC
Q 003687 531 ICGLMVPAESASIPY--FD---------------AIMLHMKSYD----------SPADGKSSFQV-EMSEIRSIVTATTS 582 (803)
Q Consensus 531 q~G~~Vpa~~a~i~~--~d---------------~I~~~ig~~d----------~l~~~~stfs~-em~~l~~iLa~a~~ 582 (803)
+...+|++.+-.++- -+ +...+.+..+ .+..+-+..|. +.++++.+.+...+
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 223344444321110 01 1111112111 12222234454 45567778888899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
++++|+||||++||.+....+. ..+..+.+ ++|+|++||.+..+..+++...+.++...
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~-~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIIL-QALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLV 533 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHH-HHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCcee
Confidence 9999999999999998766665 55555554 48999999999988777765555555443
No 359
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=7.2e-14 Score=144.64 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=89.8
Q ss_pred eEEEecccccccccCCCceeccccCCCceEEEEecCCCChhHHHHHHHhhH------hh-hhccccccccccccc-----
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS------LL-GICGLMVPAESASIP----- 544 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsLGeii~ItGPNGsGKSTLLR~Iagl~------~l-aq~G~~Vpa~~a~i~----- 544 (803)
.+.++|...+ ++..+++++++ ++++|+|||||||||++++|..+. .. .+.| +++......+
T Consensus 5 ~l~l~nfk~~-----~~~~~l~~~~~-~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 5 KLVLENFKSY-----AGEQVIGPFHK-SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEEECcccC-----CCCeeeccCCC-CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 3666776532 35678888888 899999999999999999998432 00 1111 1222211100
Q ss_pred ----hhHHH-----h--------------------hhCCCCCCccCCccchHHHHHHHHH-HHHhC----CCCcEEEEeC
Q 003687 545 ----YFDAI-----M--------------------LHMKSYDSPADGKSSFQVEMSEIRS-IVTAT----TSRSLVLIDE 590 (803)
Q Consensus 545 ----~~d~I-----~--------------------~~ig~~d~l~~~~stfs~em~~l~~-iLa~a----~~psLlLLDE 590 (803)
.+... + ..++..+........++.++++... +.+.+ .+|+++|+||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 01000 0 0011111111223455666665333 33333 4589999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 591 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 591 P~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
|++|+|+.....+. .+++.+. .+.++|++||+.++...+++
T Consensus 158 Pt~gLD~~~~~~l~-~~l~~~~-~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 158 IDAALDFRNVSIVA-NYIKERT-KNAQFIVISLRNNMFELADR 198 (212)
T ss_pred CCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEECcHHHHHhCCE
Confidence 99999999887775 6666665 46789999999887776654
No 360
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.2e-14 Score=157.74 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=109.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccccc--------c
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA--------E 539 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa--------~ 539 (803)
.++++|++..|. .+..++++|+|| |+-++|+|++||||||++..++|.....+ .|..+.. .
T Consensus 336 ~l~~~~vsF~y~--~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecC--CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence 578888876552 234589999999 89999999999999999999998642211 1111110 0
Q ss_pred ccccchhH------------------------HHhhhCCCCCCc-----------cCCccchHH-HHHHHHHHHHhCCCC
Q 003687 540 SASIPYFD------------------------AIMLHMKSYDSP-----------ADGKSSFQV-EMSEIRSIVTATTSR 583 (803)
Q Consensus 540 ~a~i~~~d------------------------~I~~~ig~~d~l-----------~~~~stfs~-em~~l~~iLa~a~~p 583 (803)
.+.++|-. .++...+..+.+ ..+-..+|+ |.++++.+....++.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 01122211 122222222111 111224454 445577666678899
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEEE
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 646 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~~ 646 (803)
+++||||||.|||+....+++..+.+++. |+|+||+||.....+..++...+.+++...+.
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence 99999999999999999998855555543 78999999999887777776666666655443
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.9e-13 Score=135.23 Aligned_cols=150 Identities=20% Similarity=0.254 Sum_probs=103.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------hhcc-----------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------GICG----------- 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------aq~G----------- 533 (803)
-+.+.++++.| ++..-..|+|| |++++|+|.+||||||||++|++-+.. ...|
T Consensus 6 LL~V~~lsk~Y----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 6 LLSVSGLSKLY----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ceeehhhhhhh----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 36778898887 34456788888 899999999999999999999985410 0000
Q ss_pred ----------ccccccc-----------cccch---------h-------HHHhhhCCC-CCCccCCccchHHHHHHHHH
Q 003687 534 ----------LMVPAES-----------ASIPY---------F-------DAIMLHMKS-YDSPADGKSSFQVEMSEIRS 575 (803)
Q Consensus 534 ----------~~Vpa~~-----------a~i~~---------~-------d~I~~~ig~-~d~l~~~~stfs~em~~l~~ 575 (803)
.+|-+.. +.++. + ...+.+..+ .+.+.....+|+.+|++...
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 1111110 01100 0 012222222 12334456799999998544
Q ss_pred -HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCc
Q 003687 576 -IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 576 -iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~~~ 631 (803)
+...++.|.|+++||||.|||..-...+. .+++.+ .+.+..++++|||+..+.+.
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLL-DllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHH-HHHHHHHHhcCceEEEEechhHHHHHh
Confidence 55568999999999999999999888887 666766 57799999999999888754
No 362
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.49 E-value=2.3e-13 Score=142.45 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=51.8
Q ss_pred CccchHHHHHH-HHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 562 GKSSFQVEMSE-IRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 562 ~~stfs~em~~-l~~iLa~a----~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
....++.++++ +..+.+.+ .+|+++|+|||++|+|+.....+. ..++.+.+ +.++|++||..+....+++.
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHhhCCEE
Confidence 34567777765 33333332 468999999999999999888876 56666655 78999999998877666543
No 363
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.49 E-value=1.1e-13 Score=176.99 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=57.9
Q ss_pred cchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccChhhhhCccccccccc
Q 003687 564 SSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 564 stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
..+|.+++| ++.+.+.+.+|+++||||||++||+.....+. ..++.+.+ .|.|+|++||+++....+++...+..
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 456666655 66777789999999999999999998877776 56666654 68999999999988776665444433
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=6e-14 Score=141.15 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=96.2
Q ss_pred EEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccccccc---------------
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA--------------- 538 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa--------------- 538 (803)
+.++|++-.+ ++..++|++|| |+.-+|+||||+||||+|..|+|-.-....-.++..
T Consensus 6 L~~~~vsVsF----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 6 LYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred EEEeceEEEE----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 5666776554 56789999999 899999999999999999999997522111011100
Q ss_pred cccccchhHHHhhhCCCCCCccC----Cc-----------------------------------cchHHHHHHHHH-HHH
Q 003687 539 ESASIPYFDAIMLHMKSYDSPAD----GK-----------------------------------SSFQVEMSEIRS-IVT 578 (803)
Q Consensus 539 ~~a~i~~~d~I~~~ig~~d~l~~----~~-----------------------------------stfs~em~~l~~-iLa 578 (803)
...+-++.+.+|..+++.+|+.. .. +.++-+.+|... -+-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 00111222334444444444321 11 111112222111 111
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Cccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 633 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~ 633 (803)
.+++|+|+|+|||.+|+.-.+....+ .+++.++. +++++++-||+++.+ ++.+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~-~hsilVVEHDM~Fvr~~A~~ 215 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAG-KHSILVVEHDMGFVREIADK 215 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhc-CceEEEEeccHHHHHHhhhe
Confidence 27999999999999999999888887 78888875 689999999999875 4433
No 365
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.47 E-value=2.3e-13 Score=159.61 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=109.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~ 532 (803)
.++++|++..| .+++.+++|+|| |+.++|+|||||||||+++.+.++... .+.
T Consensus 328 ~I~f~~vsf~y---~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 328 SIEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred eEEEEEEEEEc---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 48888887554 346799999999 899999999999999999999998621 111
Q ss_pred cccccccccccc--hhHH------------H------------hhhC--CCCCCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDA------------I------------MLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~------------I------------~~~i--g~~d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
-.+||++...+. ..++ + ..++ |..-.+..+-..+|.+.+| ++.+.+...+|
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 225665442221 0111 1 1111 1111122223456665554 77777789999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+++||||||+++|+.....+..++. .+. ++.|+|+++|.+.....+++...+.++.+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~-~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i 541 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALK-KLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRI 541 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHH-HHh-cCCEEEEEeccHhHHHhCCEEEEEECCEE
Confidence 9999999999999998888875444 444 45799999999988777776555555554
No 366
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.47 E-value=2.4e-13 Score=140.30 Aligned_cols=128 Identities=19% Similarity=0.170 Sum_probs=79.0
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhcc--------c------------cccccccc---------cch--hHH-Hh
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICG--------L------------MVPAESAS---------IPY--FDA-IM 550 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G--------~------------~Vpa~~a~---------i~~--~d~-I~ 550 (803)
|++++|+|||||||||+|++|.+.++-...+ . ++++.... +.. +.. +.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~ 107 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVL 107 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhh
Confidence 4699999999999999999998643100000 0 00000000 000 000 00
Q ss_pred hhCC-CCCCccCCccchHHHHHH-HHHHHHhC----------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEE
Q 003687 551 LHMK-SYDSPADGKSSFQVEMSE-IRSIVTAT----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 618 (803)
Q Consensus 551 ~~ig-~~d~l~~~~stfs~em~~-l~~iLa~a----------~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tv 618 (803)
...+ ..+.+.....+++.++++ +..+.+.+ .+|+++|+|||++++|+.....+. .+++.+++.+.|+
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~ti 186 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMV 186 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 1111 122233445567777665 33333333 267999999999999999888875 6777777668999
Q ss_pred EEEccChhhhhCc
Q 003687 619 IVSTHLHGIFSLP 631 (803)
Q Consensus 619 I~sTH~~eL~~~~ 631 (803)
|++||+.++....
T Consensus 187 i~itH~~~~~~~~ 199 (213)
T cd03279 187 GVISHVEELKERI 199 (213)
T ss_pred EEEECchHHHHhh
Confidence 9999999877543
No 367
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=3e-13 Score=159.89 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=105.0
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhccccccccccccch---
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIPY--- 545 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G~~Vpa~~a~i~~--- 545 (803)
.+.++++|+. |++++|+||+||||||||++++|-..- .+.-.||+++...++.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 4789999998 899999999999999999999997621 1122344444322221
Q ss_pred ------------------------hHHHhhhCCCCCCccCCc-----cch-HHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 003687 546 ------------------------FDAIMLHMKSYDSPADGK-----SSF-QVEMSEIRSIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 546 ------------------------~d~I~~~ig~~d~l~~~~-----stf-s~em~~l~~iLa~a~~psLlLLDEP~sGL 595 (803)
++.+...++..+.-.... ... .+|.++++.++..+++|+++++||||+||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 123344444331111111 112 23667788899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccCh--hhhhCcccccccccceeEE
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~--eL~~~~~~~~~v~~~~m~~ 644 (803)
|...+..+. .+++.+++.|+|||++-|.+ ++..+.++.--...+.+.+
T Consensus 202 DS~sA~~vv-~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 202 DSFSALQVV-QLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred chhhHHHHH-HHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 999999987 88888888899999999997 4555555544444444443
No 368
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.4e-13 Score=144.80 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=104.5
Q ss_pred ceEEEEecCCCChhHHHHHHHhhH--------------hhhhccccccccc---cccchhHHHhhhCCCCCCccCC----
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAAS--------------LLGICGLMVPAES---ASIPYFDAIMLHMKSYDSPADG---- 562 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~--------------~laq~G~~Vpa~~---a~i~~~d~I~~~ig~~d~l~~~---- 562 (803)
.+++|.|++||||||++|+|+|+. .-+..+.++|.+. +++++--++|.++++..|+..+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 799999999999999999999997 1234566777654 4455555677777766666544
Q ss_pred ---------------------ccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hcCCEEE
Q 003687 563 ---------------------KSSFQVE-MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 619 (803)
Q Consensus 563 ---------------------~stfs~e-m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-~~g~tvI 619 (803)
..++|.+ .++.+...+..+.|+|+|||||.++||..-..+++ -.+|.+. +.+..|+
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~IPIl 183 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYLERLRDEINIPIL 183 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCCCEE
Confidence 2344443 34456666678999999999999999999888887 6777775 5688999
Q ss_pred EEccChhh-hhCcccccccccceeEE
Q 003687 620 VSTHLHGI-FSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 620 ~sTH~~eL-~~~~~~~~~v~~~~m~~ 644 (803)
++||.+++ +.++++..-+.++.+..
T Consensus 184 YVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 184 YVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred EEecCHHHHHhhhheEEEecCCeEEe
Confidence 99999865 46777766666666654
No 369
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=1.7e-13 Score=167.20 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=108.5
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---------------------h
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------L 529 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---------------------l 529 (803)
...++++|++..|.. ..+..|++++|| |+.++|+|||||||||+++.+.++.- .
T Consensus 348 ~g~ief~nV~FsYPs-Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPS-RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred ccceEEEEEEecCCC-CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 345788888766643 235689999999 89999999999999999999999861 1
Q ss_pred hhcccccccccccc--chhHHHhhhCCCCC----------------------------CccCCccchHHHHHH-HHHHHH
Q 003687 530 GICGLMVPAESASI--PYFDAIMLHMKSYD----------------------------SPADGKSSFQVEMSE-IRSIVT 578 (803)
Q Consensus 530 aq~G~~Vpa~~a~i--~~~d~I~~~ig~~d----------------------------~l~~~~stfs~em~~-l~~iLa 578 (803)
.++| .|.+++..+ ...++|. +|..+ .+-..-..++++.+| ++.+.+
T Consensus 427 ~~ig-lV~QePvlF~~tI~eNI~--~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 427 SQIG-LVSQEPVLFATTIRENIR--YGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hhcC-eeeechhhhcccHHHHHh--cCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 1222 233332111 0011110 01000 001111235566654 777777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEE
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~ 645 (803)
.+.+|++|||||||++||++....+ ...++... .|.|+|+++|.+...+.++....+.++.+...
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVV-QEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHH-HHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 8999999999999999999875555 46666554 47899999999998887776655555555433
No 370
>PTZ00243 ABC transporter; Provisional
Probab=99.44 E-value=3.2e-13 Score=174.02 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=97.6
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-------hhccccccccccccc--hhHHHh---------
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGLMVPAESASIP--YFDAIM--------- 550 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-------aq~G~~Vpa~~a~i~--~~d~I~--------- 550 (803)
++.+++|+|| |++++|+|||||||||||++|+|.... .....|+|++...+. ..+++.
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 4679999998 899999999999999999999998622 122345666532111 111111
Q ss_pred --------------hhC--CCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 003687 551 --------------LHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 551 --------------~~i--g~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~ 613 (803)
..+ |....+......++.++++ ++.+.+.+.+|+++|||||+++||+..+..+...++....
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~- 830 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL- 830 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-
Confidence 111 1111222334566776655 6667777899999999999999999988888765554333
Q ss_pred cCCEEEEEccChhhhhCccccc
Q 003687 614 IGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 614 ~g~tvI~sTH~~eL~~~~~~~~ 635 (803)
.|+|+|++||+.+....+++..
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCEEE
Confidence 4899999999999877655433
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.44 E-value=1.5e-13 Score=176.66 Aligned_cols=148 Identities=20% Similarity=0.121 Sum_probs=101.6
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-------ccccccccccccc--hhHHHh----------
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASIP--YFDAIM---------- 550 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-------~G~~Vpa~~a~i~--~~d~I~---------- 550 (803)
+++++|++| |++++|+|||||||||||++|+|+..... ...|+|++...++ ..++|.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 468999998 89999999999999999999999863211 1235565532221 112221
Q ss_pred ----h---------hCCCCC--CccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 003687 551 ----L---------HMKSYD--SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 614 (803)
Q Consensus 551 ----~---------~ig~~d--~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~ 614 (803)
. .+...+ .+.....+++.++++ ++.+.+.+.+|+++|||||+++||+..+..+...++..+. +
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~ 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c
Confidence 0 000011 112223567777765 6667777899999999999999999999999866665554 4
Q ss_pred CCEEEEEccChhhhhCccccccccccee
Q 003687 615 GCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 615 g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
++|+|++||+++....+++...+.++..
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 8999999999998776665544444443
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.43 E-value=4.2e-13 Score=171.46 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=97.2
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---hhh--------------------ccccccccccccch
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LGI--------------------CGLMVPAESASIPY 545 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---laq--------------------~G~~Vpa~~a~i~~ 545 (803)
.+.+++|+|+ |++++|+||||||||||||+|+|... ... ...+++++...++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3567888888 89999999999999999999999741 000 01233433211110
Q ss_pred ---h-----------------------------HHHhhhCCCCCCccC-----CccchHHHHH-HHHHHHHhCCCCcEEE
Q 003687 546 ---F-----------------------------DAIMLHMKSYDSPAD-----GKSSFQVEMS-EIRSIVTATTSRSLVL 587 (803)
Q Consensus 546 ---~-----------------------------d~I~~~ig~~d~l~~-----~~stfs~em~-~l~~iLa~a~~psLlL 587 (803)
. +.++..++..+.... ....+|.+++ ++..+.+.+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 0 112222333221111 1234555554 4666777789999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccCh--hhhhCcccccccccceeE
Q 003687 588 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 588 LDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~--eL~~~~~~~~~v~~~~m~ 643 (803)
+||||+|||+..+..+. .+++.+.+ .|.|+|+++|+. ++.++.++...+..+.+.
T Consensus 233 lDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 233 WDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred EeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 99999999999999887 67777765 589999999995 344556654444444443
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.42 E-value=1.4e-12 Score=147.30 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=105.3
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhcccccccccc---------
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA--------- 541 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a--------- 541 (803)
...+.+.|+..-| .++..+.++++| ++.++++||||+|||||||++.|.+.. ..|...|-...
T Consensus 387 ~pvi~~~nv~F~y---~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 387 PPVIMVQNVSFGY---SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCeEEEeccccCC---CCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhh
Confidence 3346666765433 444478888888 589999999999999999999997621 11221111111
Q ss_pred ----------------------ccchhHHHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 542 ----------------------SIPYFDAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 542 ----------------------~i~~~d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
.......++.++|.. +......+++|.+++. +..+....+.|.|+||||||+|||.
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 111233466666665 4445566778887776 4445556899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 598 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
..-.+++ +.+.+...++|++|||..+.. .+.....+.++
T Consensus 543 ~tid~la----eaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~ 582 (614)
T KOG0927|consen 543 ETIDALA----EAINEFPGGVVLVSHDFRLISQVAEEIWVCENG 582 (614)
T ss_pred hhHHHHH----HHHhccCCceeeeechhhHHHHHHHHhHhhccC
Confidence 8755555 556666678999999988764 34444444433
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.42 E-value=3.8e-13 Score=138.33 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=52.0
Q ss_pred ccchHHHHHHH-------HHHHHhCCCCcEEEEeCCCCCCChHHHH-HHHHHHHHHHHhc-CCEEEEEccChhhhhCcc
Q 003687 563 KSSFQVEMSEI-------RSIVTATTSRSLVLIDEICRGTETAKGT-CIAGSIIETLDNI-GCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 563 ~stfs~em~~l-------~~iLa~a~~psLlLLDEP~sGLD~~~g~-~L~~~ILe~L~~~-g~tvI~sTH~~eL~~~~~ 632 (803)
...++.++++. +.+.+.+.+|+++|+|||+++||+.... .+. .++..+.+. +.++|++||+.++...++
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~iiiitH~~~~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQLIVITHDEELVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCEEEEEEecHHHHhhCC
Confidence 34566666653 2333447899999999999999999888 775 666776655 889999999998766544
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=147.21 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=107.8
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--------------------hhhh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--------------------~laq 531 (803)
..+.++++.-. ....+++++++++| |+.++|+||+|||||||.|+|.|+. .+.+
T Consensus 333 g~L~Ve~l~~~--PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 333 GALSVERLTAA--PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred ceeeEeeeeec--CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 34777776421 12345799999999 8999999999999999999999985 2333
Q ss_pred ccccccccccccch-hHHHhhhCC---------------------------CCCCccCCccchHHHHHH-HHHHHHhCCC
Q 003687 532 CGLMVPAESASIPY-FDAIMLHMK---------------------------SYDSPADGKSSFQVEMSE-IRSIVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~~-~d~I~~~ig---------------------------~~d~l~~~~stfs~em~~-l~~iLa~a~~ 582 (803)
...|.|++...++- ..+-..+|+ -.-.+-.+-+++|.+.+| +..+.+.-.+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 44566765322210 000111111 111222333566666554 6667777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~ 635 (803)
|.|++||||-++||..--.++. .-+..++++|+++|++||-.......++.-
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~-~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALA-AAILAAKARGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHH-HHHHHHHHcCCEEEEEecCHHHHhhcceee
Confidence 9999999999999998667776 555667888999999999999877665443
No 376
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.41 E-value=3.8e-13 Score=173.37 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=107.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh-------hccccccccccccc-
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASIP- 544 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la-------q~G~~Vpa~~a~i~- 544 (803)
.+.++|++..|. ...+++++|++| |++++|+||||||||||+|+|+|..... ....|+|++...+.
T Consensus 636 ~i~~~~~~~~~~--~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 636 SITVHNATFTWA--RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred cEEEEEeEEEcC--CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 578888876552 123579999998 8999999999999999999999986321 11245666532111
Q ss_pred -hhHHHh--------------h------hC-----CCCCCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 545 -YFDAIM--------------L------HM-----KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 545 -~~d~I~--------------~------~i-----g~~d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
..++|. . .+ |....+......+++++++ ++.+.+...+|+++|||||++++|+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 111111 0 00 0011122233466776655 6667777899999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCEEEEEccChhhhhCcccccccccc
Q 003687 598 AKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 598 ~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
..+..+...+.+.. ..+++|+|++||+.+....+++...+.++
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 99888886665421 23478999999999887765544333333
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.40 E-value=9.2e-13 Score=169.62 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=109.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.++++|++..|. .+.++|++|+|| |+.++|+|++|||||||+++|.++.. +.+.
T Consensus 1234 ~I~f~nVsf~Y~--~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYR--PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEEC--CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 488888876552 223579999999 89999999999999999999999861 1223
Q ss_pred cccccccccccc--hhH-----------H---HhhhCCC-----------CCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 533 GLMVPAESASIP--YFD-----------A---IMLHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d-----------~---I~~~ig~-----------~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
-.+||++...+. ..+ + .....+. ...+..+-..+|.+.+| ++.+.+.+.+|+
T Consensus 1312 i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1312 LSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred cEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 345676642221 000 1 1111111 11122223457776665 666777789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
++||||||+++|+.....+. ..++... +++|+|+++|.++....+++.-.+..+++
T Consensus 1392 ILILDEATSaLD~~Te~~Iq-~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQ-RTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred EEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999998766665 4444443 47999999999988777665544444444
No 378
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.8e-13 Score=131.51 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=104.5
Q ss_pred eEEEeccccccc-ccCCC--ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------hhhccccc---ccc
Q 003687 477 CLKMNGLSPYWF-DAAEG--SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------LGICGLMV---PAE 539 (803)
Q Consensus 477 ~i~l~~l~p~~~-~~~~~--~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------laq~G~~V---pa~ 539 (803)
++.++|+.+.+. ...++ -+|++++|| |+++++-||+|+||||+||++-+... +.+.|..+ .++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 456667766542 22233 378899998 89999999999999999999998751 11222211 011
Q ss_pred c-----------cccchhH-------------------------------HHhhhCCCCCCc-cCCccchHHHHHHH-HH
Q 003687 540 S-----------ASIPYFD-------------------------------AIMLHMKSYDSP-ADGKSSFQVEMSEI-RS 575 (803)
Q Consensus 540 ~-----------a~i~~~d-------------------------------~I~~~ig~~d~l-~~~~stfs~em~~l-~~ 575 (803)
. +++.+|- .+++++...+.+ ....++|+.+.+|. ..
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 0 1112221 244555544433 23467999877664 44
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+...+.+-.++||||||++||..++..+. .++..-+..|+.+|=+-||.+.-+
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVv-eli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVV-ELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHH-HHHHHHHhcCceEEEeeccHHHHH
Confidence 55568999999999999999999988886 788888888999999999987643
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.40 E-value=3e-12 Score=136.61 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=57.1
Q ss_pred ccCCccchHHHHHH-HHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 559 PADGKSSFQVEMSE-IRSIVTATT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 559 l~~~~stfs~em~~-l~~iLa~a~---~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+....++++.++++ +..+.+.+. +|+++||||||+|||+.+...+. .+++.+.+.|.++|++||++++...+++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~tvIiitH~~~~i~~aD~ 240 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKCADW 240 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCE
Confidence 44556677777765 444444454 37999999999999999988886 6777777789999999999998765543
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=6e-13 Score=129.08 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=99.6
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------hhccccccccc---cccchhHHHhhhC
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------GICGLMVPAES---ASIPYFDAIMLHM 553 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l-----------aq~G~~Vpa~~---a~i~~~d~I~~~i 553 (803)
++...+-++|+ |+++-|+||+|||||||+.-++|.+-- .+.--.+|+.. +.+.+-+-+|.++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 46677888888 899999999999999999999998611 11122345533 3344445566666
Q ss_pred CCCCCccCC------------------------------ccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 003687 554 KSYDSPADG------------------------------KSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTC 602 (803)
Q Consensus 554 g~~d~l~~~------------------------------~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~ 602 (803)
++.+++... ..+.+.+.+ +++........|+++|||||+|.||..-+..
T Consensus 93 sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~q 172 (213)
T COG4136 93 SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172 (213)
T ss_pred ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHH
Confidence 666665432 223333333 2333444578999999999999999999988
Q ss_pred HHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 603 IAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 603 L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
...-+.......|..++++|||++.+.
T Consensus 173 fR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 173 FRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHhcCCCeEEEecccccCC
Confidence 887888888888999999999987655
No 381
>PLN03232 ABC transporter C family member; Provisional
Probab=99.40 E-value=1.7e-12 Score=167.28 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=108.5
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh--------ccccccccccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP 544 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq--------~G~~Vpa~~a~i~ 544 (803)
.+.++|++-.|.. ..++++++|+|| |+.++|+||+|||||||++.|.|...... ...|||++...+.
T Consensus 614 ~I~~~~vsF~y~~-~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDS-KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCC-CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 5788888755521 124679999999 89999999999999999999999864322 2235666542221
Q ss_pred --hhHHHh-----------------------hhCCCCC--CccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCC
Q 003687 545 --YFDAIM-----------------------LHMKSYD--SPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 545 --~~d~I~-----------------------~~ig~~d--~l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD 596 (803)
..++|. ..+...+ .+..+-..+|++.+ +++.+.+...+|+++||||||+++|
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 111111 1111111 11122234666554 4777777789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 597 ~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
+..+..+...++.... +++|+|++||..+....+++...+.++
T Consensus 773 ~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G 815 (1495)
T PLN03232 773 AHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEG 815 (1495)
T ss_pred HHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCC
Confidence 9988888767665543 578999999999887766654433333
No 382
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=1.2e-12 Score=167.71 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=105.4
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------- 530 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------------------- 530 (803)
.+++++++..|.. ..+.+|++|+|| |+.++|+||+||||||++++|.++....
T Consensus 1165 ~I~f~nVsF~Y~~-~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS-RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCC-CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 5888888766532 124579999999 8999999999999999999999987541
Q ss_pred -------------------------------hcc---------------------ccccccccccc--hhHHHh------
Q 003687 531 -------------------------------ICG---------------------LMVPAESASIP--YFDAIM------ 550 (803)
Q Consensus 531 -------------------------------q~G---------------------~~Vpa~~a~i~--~~d~I~------ 550 (803)
..| .+||++...+. ..++|.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence 111 13344322110 011111
Q ss_pred ---------hhCCCCCC-----------ccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 003687 551 ---------LHMKSYDS-----------PADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 609 (803)
Q Consensus 551 ---------~~ig~~d~-----------l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe 609 (803)
...+..+. +..+-..+|++.+ +++.+.+.+.+|++||||||||+||+.....+. ..++
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~-~~L~ 1402 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE-KTIV 1402 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHH
Confidence 00011110 1111234566554 477777889999999999999999998877776 4445
Q ss_pred HHH-hcCCEEEEEccChhhhhCcccccccc
Q 003687 610 TLD-NIGCLGIVSTHLHGIFSLPLKIKNAA 638 (803)
Q Consensus 610 ~L~-~~g~tvI~sTH~~eL~~~~~~~~~v~ 638 (803)
.+. ..+.|+|++||.++....+++...+.
T Consensus 1403 ~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~ 1432 (1466)
T PTZ00265 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFN 1432 (1466)
T ss_pred HHhccCCCEEEEEechHHHHHhCCEEEEEe
Confidence 554 35899999999998887776544433
No 383
>PLN03130 ABC transporter C family member; Provisional
Probab=99.39 E-value=8.3e-13 Score=170.62 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=108.9
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh--------ccccccccccccc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP 544 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq--------~G~~Vpa~~a~i~ 544 (803)
.+.++|++-.|.. ..++++++|+|| |+.++|+||+|||||||++.|.|...... ...|||++...+.
T Consensus 614 ~I~~~nvsf~y~~-~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWDS-KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEccC-CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 4788888755521 124679999999 89999999999999999999999874332 2235666542211
Q ss_pred --hhHHH-----------------------hhhC--CCCCCccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCC
Q 003687 545 --YFDAI-----------------------MLHM--KSYDSPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 545 --~~d~I-----------------------~~~i--g~~d~l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD 596 (803)
..++| +..+ |..-.+..+-..+|++.+ +++.+.+...+|+++|||||++++|
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 11111 1111 111111122234666654 4777777789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccc
Q 003687 597 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 640 (803)
Q Consensus 597 ~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~ 640 (803)
+..+..+...++..+. +++|+|++||..+....+++...+.++
T Consensus 773 ~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G 815 (1622)
T PLN03130 773 AHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1622)
T ss_pred HHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCC
Confidence 9988888766666543 479999999999887766654433333
No 384
>PLN03140 ABC transporter G family member; Provisional
Probab=99.39 E-value=7.7e-13 Score=169.00 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=56.5
Q ss_pred chHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-cCCEEEEEccCh--hhhhCcccccccccc
Q 003687 565 SFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYK 640 (803)
Q Consensus 565 tfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~-~g~tvI~sTH~~--eL~~~~~~~~~v~~~ 640 (803)
.+|.++++ +..+.+.+.+|+++++||||+|||+.....+. .+++.+.+ .|.|+|+++|+. +..+++++...+..+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 34444443 44455668999999999999999999999987 66666754 689999999985 455666655444444
Q ss_pred eeE
Q 003687 641 AMG 643 (803)
Q Consensus 641 ~m~ 643 (803)
++.
T Consensus 415 ~iv 417 (1470)
T PLN03140 415 QIV 417 (1470)
T ss_pred eEE
Confidence 443
No 385
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.5e-12 Score=168.29 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=111.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.++++|++-.|. .+..+|++|+|| |+.++|+|++|||||||+++|.++.. +.+.
T Consensus 1237 ~I~f~nVsf~Y~--~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYR--PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeC--CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 588999876652 223579999999 89999999999999999999999861 1223
Q ss_pred cccccccccccc--hhH-----------HH---hhhC-----------CCCCCccCCccchHHHHHH-HHHHHHhCCCCc
Q 003687 533 GLMVPAESASIP--YFD-----------AI---MLHM-----------KSYDSPADGKSSFQVEMSE-IRSIVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d-----------~I---~~~i-----------g~~d~l~~~~stfs~em~~-l~~iLa~a~~ps 584 (803)
..+||++...+. ..+ .+ .... |..-.+..+-..+|.+.+| ++.+.+.+.+|+
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345666643221 000 11 1111 1111122233467777665 666777789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
++||||||+++|...-..|. ..++... +++|+|+++|.++....+++.-.+..+.+.
T Consensus 1395 ILILDEATSaLD~~Te~~Iq-~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQ-KTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 99999999999998766665 5555443 479999999999988777766555555544
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.38 E-value=1.9e-12 Score=166.53 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=104.3
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------------------hhhcc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICG 533 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------------------laq~G 533 (803)
.+.++|++-.|. .+...|++|+|| |+.++|+|++|||||||+++|.++.. +.+.-
T Consensus 1217 ~I~f~nVs~~Y~--~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYT--EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeC--CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 588888876652 234689999999 89999999999999999999999862 11222
Q ss_pred ccccccccccch--hHH--------------HhhhCCCCC-----------CccCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 534 LMVPAESASIPY--FDA--------------IMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 534 ~~Vpa~~a~i~~--~d~--------------I~~~ig~~d-----------~l~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
.++|++...++- .++ .+...+..+ .+..+-..+|.+.+| ++.+.+.+.+|++
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 345655422210 011 111112111 111222357776665 6667777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
|||||||+++|+.....|. ..++... .++|+|++||.++....+++.
T Consensus 1375 LlLDEaTS~lD~~Te~~I~-~~L~~~~-~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIR-KTLKQSF-SNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhCCEE
Confidence 9999999999998767665 4444433 379999999999877666544
No 387
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.37 E-value=2.3e-12 Score=166.17 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=108.6
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq 531 (803)
..++++|++-.|. .+...|++|+|| |+.++|+|++|||||||+++|.++.. +..
T Consensus 1283 g~I~f~nVsf~Y~--~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR--EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeC--CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 3588898876552 123579999999 89999999999999999999999862 122
Q ss_pred ccccccccccccch--hH-----------H---HhhhCCCC-----------CCccCCccchHHHHHH-HHHHHHhCCCC
Q 003687 532 CGLMVPAESASIPY--FD-----------A---IMLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 532 ~G~~Vpa~~a~i~~--~d-----------~---I~~~ig~~-----------d~l~~~~stfs~em~~-l~~iLa~a~~p 583 (803)
.-.+||++...+.- .+ . .....+.. -.+..+-..+|.+.+| ++.+.+.+.+|
T Consensus 1361 ~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred cCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 33456666432210 00 1 11111111 1122223457776655 66677778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+++||||||+++|+.....+. ..++... +++|+|+++|.++....+++.-.+..+.+
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq-~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQ-STIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 999999999999998766664 4554433 47999999999988776665544444433
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=2.4e-12 Score=135.96 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=50.3
Q ss_pred cchHHHHHH-HHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 564 SSFQVEMSE-IRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 564 stfs~em~~-l~~iLa~a----~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
..++.++++ +..+.+.+ .+|+++|+|||++|+|+.....+. .++..+.+.|.++|++||+.++...++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccCCcEEEEEECCHHHHhhCC
Confidence 344555554 33333333 358999999999999999888886 666677666899999999988876655
No 389
>PTZ00243 ABC transporter; Provisional
Probab=99.36 E-value=2.6e-12 Score=165.72 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=108.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.|+++|++-.|. .+...|++|+|| |+.++|+|++|||||||+++|.++.. +.+.
T Consensus 1308 ~I~f~nVsf~Y~--~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYR--EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeC--CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 488888875552 223469999999 89999999999999999999999861 2233
Q ss_pred cccccccccccc--hhHH--------------HhhhCCCCCC-----------ccCCccchHHHHHH-HHHHHHhCCC-C
Q 003687 533 GLMVPAESASIP--YFDA--------------IMLHMKSYDS-----------PADGKSSFQVEMSE-IRSIVTATTS-R 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~--------------I~~~ig~~d~-----------l~~~~stfs~em~~-l~~iLa~a~~-p 583 (803)
..+||++...+. ..++ .+...+..+. +..+-..+|.+.+| ++.+.+.+.+ |
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred ceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 446677643221 0011 1111122111 11222457777666 5666666774 8
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
++|||||||+++|+..-..+. ..++... +++|+|+++|.++....+++...+.++.+
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq-~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQ-ATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHH-HHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEE
Confidence 999999999999998777765 4444432 37999999999998877765544444443
No 390
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.36 E-value=3.6e-12 Score=139.78 Aligned_cols=163 Identities=16% Similarity=0.144 Sum_probs=110.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh-----------------------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------- 529 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l----------------------- 529 (803)
.+.++|++-.+....+...+.++||| |+.++|+|.+|||||...+.|.+++--
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 46677776555444456789999999 899999999999999999999998611
Q ss_pred ---h---hcccccccccc-cc-chh-------------------------HHHhhhCCCCC---CccCCccchHHHHHH-
Q 003687 530 ---G---ICGLMVPAESA-SI-PYF-------------------------DAIMLHMKSYD---SPADGKSSFQVEMSE- 572 (803)
Q Consensus 530 ---a---q~G~~Vpa~~a-~i-~~~-------------------------d~I~~~ig~~d---~l~~~~stfs~em~~- 572 (803)
+ .....++++.. .+ |.. -.++...|..+ .+......+|.+.++
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 0 01112333321 01 100 01333344433 223334556665544
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh-Ccccccccccc
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 640 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~-~~~~~~~v~~~ 640 (803)
+..+++.+++|+|+|.||||..||..-...|+ .+++.| ++.|..++|+|||+.+.. ++++...+..+
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL-~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQIL-DLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHH-HHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 67788889999999999999999999999997 777777 567999999999999885 44444333333
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.7e-12 Score=145.82 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=89.5
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---h---hhcccccccccc----ccch------------
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L---GICGLMVPAESA----SIPY------------ 545 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---l---aq~G~~Vpa~~a----~i~~------------ 545 (803)
+++.++++-++ |+-++|+|+||+|||||||+|+--.+ - -..|.++++... ....
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 57788888777 89999999999999999999987220 0 011333332110 0000
Q ss_pred -------hHHHhhhCCCCCC-ccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 003687 546 -------FDAIMLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 616 (803)
Q Consensus 546 -------~d~I~~~ig~~d~-l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~ 616 (803)
.++++..+|..+. ..+...+||++.+- ++.+.+...+|+|+||||||+.||...-.- +-++|...+.
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~W----Le~yL~t~~~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW----LENYLQTWKI 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHH----HHHHHhhCCc
Confidence 1113334444332 23455678877653 555666679999999999999999975332 3467777889
Q ss_pred EEEEEccChhhhh
Q 003687 617 LGIVSTHLHGIFS 629 (803)
Q Consensus 617 tvI~sTH~~eL~~ 629 (803)
|+|++|||..+.+
T Consensus 247 T~liVSHDr~FLn 259 (582)
T KOG0062|consen 247 TSLIVSHDRNFLN 259 (582)
T ss_pred eEEEEeccHHHHH
Confidence 9999999987754
No 392
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=4.3e-12 Score=134.13 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=51.3
Q ss_pred ccchHHHHHHHH-HHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 563 KSSFQVEMSEIR-SIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 563 ~stfs~em~~l~-~iLa~a----~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
...++.++++.. .+.+.+ .+|+++|+|||++++|+.....+. .++..+. .|.++|++||..+..+.+++.
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 345566666533 232222 678999999999999999888886 5666664 488999999998888776644
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.35 E-value=4.3e-12 Score=130.01 Aligned_cols=131 Identities=9% Similarity=0.092 Sum_probs=78.7
Q ss_pred cCC-CceEEEEecCCCChhHHHHHHHhhHhhh----hccc----ccc------------ccccc----cchh--HHHhhh
Q 003687 500 VDM-QSLFLLTGPNGGGKSSLLRSICAASLLG----ICGL----MVP------------AESAS----IPYF--DAIMLH 552 (803)
Q Consensus 500 IsL-Geii~ItGPNGsGKSTLLR~Iagl~~la----q~G~----~Vp------------a~~a~----i~~~--d~I~~~ 552 (803)
++| ..+.+|+||||+||||+|..|.....-. ..|. ++. ..... .... +.+..-
T Consensus 17 l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (198)
T cd03276 17 IEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSF 96 (198)
T ss_pred EecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHH
Confidence 445 3578999999999999999997543110 0010 000 00000 0000 111111
Q ss_pred CCCCCCccCCccchHHHHHHHHH-HHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--cCCEEEEEccCh
Q 003687 553 MKSYDSPADGKSSFQVEMSEIRS-IVTA----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHLH 625 (803)
Q Consensus 553 ig~~d~l~~~~stfs~em~~l~~-iLa~----a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~--~g~tvI~sTH~~ 625 (803)
+...+.......+++.++++... +.+. +.+|+++|+|||++|+|+.....+...+.+...+ .+.++|++||++
T Consensus 97 l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 97 LTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred hccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 12123334455677777776433 3333 5899999999999999999888887444444343 246899999999
Q ss_pred hhhhC
Q 003687 626 GIFSL 630 (803)
Q Consensus 626 eL~~~ 630 (803)
+.+..
T Consensus 177 ~~i~~ 181 (198)
T cd03276 177 SGLAS 181 (198)
T ss_pred ccccc
Confidence 87654
No 394
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.7e-12 Score=147.62 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=103.4
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--------------------hhh
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLG 530 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--------------------~la 530 (803)
...++++|++..|. ...+..|++|+|| |++++|+||||+||||+...+-.+. .+.
T Consensus 463 ~G~IeF~~VsFaYP-~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYP-TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred cceEEEEEeeeecC-CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 34689999986663 2346789999999 9999999999999999999998775 112
Q ss_pred hccccccccccccc--hhHHHh------------------------hhCCC--CCCccCCccchHHHHHH-HHHHHHhCC
Q 003687 531 ICGLMVPAESASIP--YFDAIM------------------------LHMKS--YDSPADGKSSFQVEMSE-IRSIVTATT 581 (803)
Q Consensus 531 q~G~~Vpa~~a~i~--~~d~I~------------------------~~ig~--~d~l~~~~stfs~em~~-l~~iLa~a~ 581 (803)
+...+|-+++..+. ..++|. ..+.. .-.+-..-+..+++.+| ++.+.+...
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 22223433332110 111111 11100 00111112345555554 777888899
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
+|.++||||.||+||.+.-..+ ...++.+.+ +.|||++.|-+...+.++..
T Consensus 622 ~P~VLILDEATSALDaeSE~lV-q~aL~~~~~-~rTVlvIAHRLSTV~~Ad~I 672 (716)
T KOG0058|consen 622 NPRVLILDEATSALDAESEYLV-QEALDRLMQ-GRTVLVIAHRLSTVRHADQI 672 (716)
T ss_pred CCCEEEEechhhhcchhhHHHH-HHHHHHhhc-CCeEEEEehhhhHhhhccEE
Confidence 9999999999999999765444 455555544 58999999999888777643
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.30 E-value=1.1e-11 Score=125.07 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=73.7
Q ss_pred eEEEEecCCCChhHHHHHHHhhHhhhhcc----cc---------ccccccccch-hHH-HhhhCCCCCCccCCccchHHH
Q 003687 505 LFLLTGPNGGGKSSLLRSICAASLLGICG----LM---------VPAESASIPY-FDA-IMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 505 ii~ItGPNGsGKSTLLR~Iagl~~laq~G----~~---------Vpa~~a~i~~-~d~-I~~~ig~~d~l~~~~stfs~e 569 (803)
+.+|+||||+|||++|..|+-........ .. ..+..+.+.. +++ ++.-+. .++. . -++.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-~~~~-~---~LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-GKVE-Q---ILSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecC-CcCc-c---cCCHH
Confidence 89999999999999999997654211000 00 0011111110 000 111010 1111 1 14445
Q ss_pred HHHH-HH--HHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 570 MSEI-RS--IVTA--TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 570 m~~l-~~--iLa~--a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+++. .. ++.. ..+|+++|+|||++++|+.....+. .++..+.+.|.++|++||+.+....+++
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHhhCCe
Confidence 4442 22 2222 4789999999999999999888876 5666666668999999999988765543
No 396
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.28 E-value=3.6e-12 Score=121.32 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=62.2
Q ss_pred ccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhccccccccccccc--------
Q 003687 497 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP-------- 544 (803)
Q Consensus 497 lndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G~~Vpa~~a~i~-------- 544 (803)
++++++ |++++|+||||||||||+|+|+|.... .....++++....++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356666 899999999999999999999998622 111223333321111
Q ss_pred ---hhHHHhhhCCCCCCc----cCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCC
Q 003687 545 ---YFDAIMLHMKSYDSP----ADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 593 (803)
Q Consensus 545 ---~~d~I~~~ig~~d~l----~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~s 593 (803)
....++..++..+.. ......++.++++ +..+.+.+.+|+++||||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 112244444433322 2233677776665 666777789999999999996
No 397
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.28 E-value=3e-11 Score=134.65 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=99.3
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhh
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGI 531 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq 531 (803)
..++++|++.- +..+++++.|||| |+.++|+||+|+||||+||.+-.+.. +.+
T Consensus 536 G~i~fsnvtF~---Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 536 GKIEFSNVTFA---YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred CeEEEEEeEEe---cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 45788888744 4678999999999 89999999999999999999988741 122
Q ss_pred ccccccccccccch--h------------HH---------HhhhC-CCCCC-----ccCCccchHHHHHHHHHHHHhCCC
Q 003687 532 CGLMVPAESASIPY--F------------DA---------IMLHM-KSYDS-----PADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 532 ~G~~Vpa~~a~i~~--~------------d~---------I~~~i-g~~d~-----l~~~~stfs~em~~l~~iLa~a~~ 582 (803)
....||++...+.. + +. |..++ +..|- -+.++..-.+|.++.+.+......
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred hcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 22345654322110 0 01 11111 00000 011222223355567777777899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
|++++|||.||+||+....+|. +-+..+.. +.|.|++.|-+.-.-.++
T Consensus 693 P~iIlLDEATSALDT~tER~IQ-aaL~rlca-~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQ-AALARLCA-NRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHH-HHHHHHhc-CCceEEEeeeehheeccc
Confidence 9999999999999999888885 66666654 567888889766544343
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.27 E-value=3.9e-12 Score=126.21 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=80.2
Q ss_pred cCCCceEEEEecCCCChhHHHHHHHhhHh-------------------hhhccccccccc---cccc-------------
Q 003687 500 VDMQSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAES---ASIP------------- 544 (803)
Q Consensus 500 IsLGeii~ItGPNGsGKSTLLR~Iagl~~-------------------laq~G~~Vpa~~---a~i~------------- 544 (803)
++-|+++-++||||+||||||-.++|+.. +++.-.|..+.. ..+|
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~ 101 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT 101 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence 44489999999999999999999999861 111111111110 0111
Q ss_pred ---hhHHHhhhCCCCCCccCCccchHHH-HHHHHHHHHh------C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 003687 545 ---YFDAIMLHMKSYDSPADGKSSFQVE-MSEIRSIVTA------T-TSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 545 ---~~d~I~~~ig~~d~l~~~~stfs~e-m~~l~~iLa~------a-~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~ 613 (803)
..+.|...++..|.+-...+.++.+ .++...+... + ....|+|+|||.++||.....++ ..+++.+..
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~ 180 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQ 180 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHh
Confidence 1222333344444444444444432 2222111000 1 23489999999999999876666 699999999
Q ss_pred cCCEEEEEccChhhh
Q 003687 614 IGCLGIVSTHLHGIF 628 (803)
Q Consensus 614 ~g~tvI~sTH~~eL~ 628 (803)
.|.+|||++||++-.
T Consensus 181 ~G~~vims~HDLNhT 195 (248)
T COG4138 181 QGLAIVMSSHDLNHT 195 (248)
T ss_pred CCcEEEEeccchhhH
Confidence 999999999998754
No 399
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.25 E-value=8.1e-12 Score=137.00 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=98.2
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh----hhhcccc------------------ccccc-cccc--
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----LGICGLM------------------VPAES-ASIP-- 544 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~----laq~G~~------------------Vpa~~-a~i~-- 544 (803)
..+.+++|| |+.++|+|.+|||||||=+++..++. +...|.. |+++. +.+.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 467889998 89999999999999999999988861 1111111 11111 0000
Q ss_pred --hh-----------------------HHHhhhCCCC-CCccCCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 003687 545 --YF-----------------------DAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 597 (803)
Q Consensus 545 --~~-----------------------d~I~~~ig~~-d~l~~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~ 597 (803)
.- -..+...|.. .........|+.+.++ ++.+.+.+.+|++|+||||||+||.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 00 0011122221 1223345678887665 7777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCEEEEEccChhhhh-Cccccccccccee
Q 003687 598 AKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 642 (803)
Q Consensus 598 ~~g~~L~~~ILe~L~-~~g~tvI~sTH~~eL~~-~~~~~~~v~~~~m 642 (803)
.-...+. .+++.|. +.|.+.+|+|||+.... ++++...+.++.+
T Consensus 460 SVQaQvv-~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki 505 (534)
T COG4172 460 SVQAQVL-DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505 (534)
T ss_pred HHHHHHH-HHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE
Confidence 9888887 7888874 56899999999998775 4443333334433
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.23 E-value=3.6e-11 Score=124.65 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=48.0
Q ss_pred CccchHHHHHHHHHHHH-----hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-C-CEEEEEccChhh
Q 003687 562 GKSSFQVEMSEIRSIVT-----ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-G-CLGIVSTHLHGI 627 (803)
Q Consensus 562 ~~stfs~em~~l~~iLa-----~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~-g-~tvI~sTH~~eL 627 (803)
....++.+++++..+.. .+.+|+++|+|||++|+|+.....+. .++..+.+. | .++|++||++..
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~ 194 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLP 194 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhcc
Confidence 34567778877544322 26899999999999999999988886 555555544 5 579999998643
No 401
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=7.6e-11 Score=144.46 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=110.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH--------------------hhhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~--------------------~laq~ 532 (803)
.++++|++..|. ...+..|++|++| |+.++|+||+||||||.+-+|-.+. .+.+.
T Consensus 987 ~I~~~~V~F~YP-sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCC-CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 478888876664 3457799999999 8999999999999999998887764 11122
Q ss_pred cccccccccccc--hhHHHhhh------------------------C--CCCCCccCCccchHHHHH-HHHHHHHhCCCC
Q 003687 533 GLMVPAESASIP--YFDAIMLH------------------------M--KSYDSPADGKSSFQVEMS-EIRSIVTATTSR 583 (803)
Q Consensus 533 G~~Vpa~~a~i~--~~d~I~~~------------------------i--g~~d~l~~~~stfs~em~-~l~~iLa~a~~p 583 (803)
...|.+++..+. ..++|..- + |..-.+-..-..++++.+ +++.+.+.+.+|
T Consensus 1066 i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred cceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCC
Confidence 223444432211 11121111 0 000001111124455554 477788889999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEEE
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~~ 645 (803)
++|||||-||+||.+. +.+.+..++... .|.|+|+++|-+...+.++....+.++.+...
T Consensus 1146 kILLLDEATSALDseS-ErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSES-ERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred Ceeeeeccchhhhhhh-HHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 9999999999999975 444456666655 48999999999998888877766667666544
No 402
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.6e-10 Score=125.01 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=112.7
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccccccc--cccch
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPAES--ASIPY 545 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa~~--a~i~~ 545 (803)
.++++|+.--| ....+-++.||+ |+++-|+|.||||||||++.+.|+..... .|.+|.++. .+-..
T Consensus 322 ~lelrnvrfay---~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 322 TLELRNVRFAY---QDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred ceeeeeeeecc---CcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 47777776444 333466777777 89999999999999999999999873322 333443332 11112
Q ss_pred hHHHhhhCCCCCCcc---------------------------CC---ccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 003687 546 FDAIMLHMKSYDSPA---------------------------DG---KSSFQV-EMSEIRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 546 ~d~I~~~ig~~d~l~---------------------------~~---~stfs~-em~~l~~iLa~a~~psLlLLDEP~sG 594 (803)
+..+|.+.-..+.+. .+ .-..+. .-++++.+++.+.+++++++||=.+.
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 223333221111000 00 011222 34568888888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeE
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
.||.-+..+...++-.++++|+||+.+|||-.-...+++.-.+.++...
T Consensus 479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 9999999999999999999999999999998777777766666666543
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.17 E-value=6.2e-11 Score=131.73 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=92.7
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh------ccccccccc-----cccc---------------hhHHHhhhCCCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI------CGLMVPAES-----ASIP---------------YFDAIMLHMKSY 556 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq------~G~~Vpa~~-----a~i~---------------~~d~I~~~ig~~ 556 (803)
|++++++||||-|||||.|+++|.+.... ..+|-|+.. ..+. +...++..+...
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 79999999999999999999999874321 122333321 1111 112334444444
Q ss_pred CCccCCccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 557 DSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 557 d~l~~~~stfs~-em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+-+.+....+|. |+++++.+++.+.+.+|.|||||.+-||.+.+..++..|-+...+.+++.+++-||+-+.++
T Consensus 447 ~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 447 DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 444555555554 67889999999999999999999999999998888855555556778999999999887765
No 404
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.3e-11 Score=131.05 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=86.2
Q ss_pred ecccccccccCCCceeccccCCC----ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHH-------
Q 003687 481 NGLSPYWFDAAEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI------- 549 (803)
Q Consensus 481 ~~l~p~~~~~~~~~~VlndIsLG----eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I------- 549 (803)
-|+|...|.+.+.++.+..++|| +.++|+||||.||||||+.+.|-+... .|-.-....-.+++|++-
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKnhrL~iG~FdQh~~E~L~~ 665 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKNHRLRIGWFDQHANEALNG 665 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC-cchhhccceeeeechhhhhHHhhcc
Confidence 46666667777888899988884 789999999999999999998754110 010000011122222221
Q ss_pred ----------------------hhhCCCCCCcc-CCccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 003687 550 ----------------------MLHMKSYDSPA-DGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 605 (803)
Q Consensus 550 ----------------------~~~ig~~d~l~-~~~stfs~em~~-l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~ 605 (803)
+..+|...... ..+..++.+.+. ++.+--.+..|+++||||||++||.+.-.+++
T Consensus 666 Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALa- 744 (807)
T KOG0066|consen 666 EETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA- 744 (807)
T ss_pred ccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHH-
Confidence 11111110000 001122333222 22222226899999999999999998866666
Q ss_pred HHHHHHHhcCCEEEEEccChhhhh
Q 003687 606 SIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 606 ~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
+.+.+.+..||++|||..++.
T Consensus 745 ---EAIney~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 745 ---EAINEYNGGVIMVSHDERLIV 765 (807)
T ss_pred ---HHHHhccCcEEEEecccceee
Confidence 444555668999999987753
No 405
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.14 E-value=1e-10 Score=132.44 Aligned_cols=145 Identities=19% Similarity=0.282 Sum_probs=86.1
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--hhccccc------ccc-----
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICGLMV------PAE----- 539 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--aq~G~~V------pa~----- 539 (803)
.+.+.+++..+ .+..++.|+.| |+-++|+|||||||||+|++|++-... .+.+.|. |..
T Consensus 75 dvk~~sls~s~----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 75 DVKIESLSLSF----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred cceeeeeeecc----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 36777776554 36788899888 899999999999999999999885411 1111111 000
Q ss_pred ---------ccccc----------------hhHHHhhhCCCCC-------------------C-ccCCccchHHHHH-HH
Q 003687 540 ---------SASIP----------------YFDAIMLHMKSYD-------------------S-PADGKSSFQVEMS-EI 573 (803)
Q Consensus 540 ---------~a~i~----------------~~d~I~~~ig~~d-------------------~-l~~~~stfs~em~-~l 573 (803)
...+. .++.++.+....+ . .......||.+.+ ++
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 00000 0011111111000 0 0011123444433 23
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC-EEEEEccChhhhh
Q 003687 574 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIFS 629 (803)
Q Consensus 574 ~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~-tvI~sTH~~eL~~ 629 (803)
+.+.+...+|+|+||||||++||+....-|- ++|.+... ++++++|+.+...
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLe----e~L~k~d~~~lVi~sh~QDfln 283 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLE----EYLAKYDRIILVIVSHSQDFLN 283 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHH----HHHHhccCceEEEEecchhhhh
Confidence 4444457999999999999999997644332 45565555 8999999988753
No 406
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.14 E-value=7.3e-10 Score=128.94 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=97.5
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhcc---------cccccccc
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG---------LMVPAESA 541 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G---------~~Vpa~~a 541 (803)
.+.+.++|+.-. ..+++..+++.++ |+-+.|+||||||||||+|+|+|+--..... .|+|+.+
T Consensus 390 ~~~i~~~nl~l~---~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P- 465 (604)
T COG4178 390 DHGITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP- 465 (604)
T ss_pred cceeEEeeeeEE---CCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC-
Confidence 466888887522 2345688888888 8999999999999999999999996332221 3444432
Q ss_pred ccchh--------------------HHHhhhCCCCCCc------cCCccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 003687 542 SIPYF--------------------DAIMLHMKSYDSP------ADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 542 ~i~~~--------------------d~I~~~ig~~d~l------~~~~stfs~-em~~l~~iLa~a~~psLlLLDEP~sG 594 (803)
++|.- -+++...+..+-. ......++. |.++++.+....++|++++|||-|++
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 11110 0122222221111 011112333 45556666667899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
+|+.....+...+.+.+ .++|+|-+.|-..+..+..
T Consensus 546 LDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 546 LDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFHS 581 (604)
T ss_pred cChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHHh
Confidence 99988777663333332 4799999999887766543
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=128.76 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh----------------hccc---------------------c---cccc-c-
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGL---------------------M---VPAE-S- 540 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la----------------q~G~---------------------~---Vpa~-~- 540 (803)
|.+++|+||||-||||.+|+++|-+... ..|. | +|.. .
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG 179 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG 179 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc
Confidence 8999999999999999999999976110 0010 0 0100 0
Q ss_pred ---------cccchhHHHhhhCCCCCCccCCccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 003687 541 ---------ASIPYFDAIMLHMKSYDSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 610 (803)
Q Consensus 541 ---------a~i~~~d~I~~~ig~~d~l~~~~stfs~-em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~ 610 (803)
..-+.++.+..+++....+....+.+|. |+++++.+.+.+.+.++.++|||++-||...+...+ .+++.
T Consensus 180 ~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a-r~Ire 258 (591)
T COG1245 180 KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA-RVIRE 258 (591)
T ss_pred hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH-HHHHH
Confidence 0012334555566666666666666665 677788888889999999999999999999999987 77788
Q ss_pred HHhcCCEEEEEccChhhhhCccccccccc
Q 003687 611 LDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 611 L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
+.+.+++||++-||+...++.....++.+
T Consensus 259 l~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 259 LAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 87778999999999988776554444443
No 408
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.10 E-value=1.4e-08 Score=109.64 Aligned_cols=287 Identities=18% Similarity=0.184 Sum_probs=171.3
Q ss_pred cchhhccCCCCCCchHHHHHhhccCCCchH--HH---HHHHHHHH------HhcccCCCCchHHHHHHHHHhhhhhhHHH
Q 003687 141 CLLKVLLPSNCSGLPILYVRDLLLNPPAYE--IA---STIQAICK------LMSKVTCSIPEFTCLVKLLELREANHIEF 209 (803)
Q Consensus 141 ~ll~~~lp~~~~~~~~~~~r~lll~pP~~~--~a---~~i~~~~~------~~~~~~~~~p~~~~~~~ll~~~~a~~~~~ 209 (803)
+|+.+ |-.-.++.=++.+|.||++|+.-. +- +.++++.. -+...-..+|++..+.+.+..+..+-.+|
T Consensus 3 sL~~~-l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~~el 81 (308)
T smart00533 3 SLFEL-LNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASPRDL 81 (308)
T ss_pred CHHHH-HccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCHHHH
Confidence 34444 333234555999999999977421 11 12222222 11123355788988888888777888888
Q ss_pred HHHHHHHHHHHhhhcCchHHHHHHhhcchh--hhhhccCCChHHHHHHHHHHHHHhhchhcccCCccccc-cCCCCCChh
Q 003687 210 CRIKNVLDEILHMYGNSELNEILELLMDPT--WVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKI-CSYDNIPSE 286 (803)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~c~~~~~~i~~~v~~~~~~~~~~-~~~~~i~~~ 286 (803)
.++.+.+..+..+. .+++..-.+. .+...+. +.+.+. +..+.+++. +.+... .+.+.|.+.
T Consensus 82 ~~l~~~l~~~~~l~------~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~l~~~~~---~~~~~~~~~~~~i~~~ 145 (308)
T smart00533 82 LRLYDSLEGLKEIR------QLLESLDGPLLGLLLKVIL---EPLLEL----LELLLELLN---DDDPLEVNDGGLIKDG 145 (308)
T ss_pred HHHHHHHHHHHHHH------HHHHhcCcHHHHHHHHhhc---cchHHH----HHHHHHHhc---cCCcccccCCCeeCCC
Confidence 88888777554332 2222211000 0000000 001111 122222222 222211 111233333
Q ss_pred HHhhhhhhhccccccccchHHHHHHHHHHHHHHHHHhhchHHHHHHHHhhcCCCCCCCccchhcccccceeeeccceecc
Q 003687 287 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPT 366 (803)
Q Consensus 287 f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~l~~~~~~~~~l~~~~~ei~~~~~~~~~~~r~~r~~~~ 366 (803)
++++++.+.+....+...+.+.+..+..+ ++. +.+.+. ....++ |+++
T Consensus 146 -----------------~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~-------~~~--~~l~~~----~~~~~g--~~i~ 193 (308)
T smart00533 146 -----------------FDPELDELREKLEELEEELEELLKKEREE-------LGI--DSLKLG----YNKVHG--YYIE 193 (308)
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCC--CceEEe----EeccEE--EEEE
Confidence 44455666666666555555443322221 110 111000 011222 6676
Q ss_pred cccCCCCccccCcccccccCCCCccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003687 367 VWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 446 (803)
Q Consensus 367 v~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~i~~il~~L~~~l~~~i~~L~~~~~~~~~ 446 (803)
++.+.. ..+++.++..+++|.+++ |++.++.++++++.++..++.+...++++++...+..+...+..+...++.
T Consensus 194 v~~~~~--~~~~~~~~~~s~s~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~ 268 (308)
T smart00533 194 VTKSEA--KKVPKDFIRRSSLKNTER---FTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAE 268 (308)
T ss_pred ecchhh--ccCChHHHHHhhhcccce---eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665533 367888888888888764 779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccCCceeeEeecCccCCcceEEEeccccc
Q 003687 447 GKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPY 486 (803)
Q Consensus 447 a~~l~a~a~~a~~~~~~~P~i~~~~~~g~~~i~l~~l~p~ 486 (803)
.|+++|.|..+...+||+|+|++. ..+.+++.+|+
T Consensus 269 lD~l~s~a~~a~~~~~~~P~i~~~-----~~l~i~~~rHP 303 (308)
T smart00533 269 LDVLLSLATLAAEGNYVRPEFVDS-----GELEIKNGRHP 303 (308)
T ss_pred HHHHHHHHHHHHHCCCcCCeeCCC-----CCEEEeeCCCC
Confidence 999999999999999999999864 35777665443
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=1e-10 Score=143.44 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=86.4
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-------hhhcccccccc-----ccccchhHHHhhhCCC
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------LGICGLMVPAE-----SASIPYFDAIMLHMKS 555 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-------laq~G~~Vpa~-----~a~i~~~d~I~~~ig~ 555 (803)
+.+.+|+||+= |..++|+|+|||||||||++++|=.. +...|.+.+++ .+++.|.|--...+++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 34578888875 78999999999999999999998642 22234443321 1233333322233333
Q ss_pred CCCccCC----------cc---ch------HHHHHHHHHH--------------------HHhCCCC-cEEEEeCCCCCC
Q 003687 556 YDSPADG----------KS---SF------QVEMSEIRSI--------------------VTATTSR-SLVLIDEICRGT 595 (803)
Q Consensus 556 ~d~l~~~----------~s---tf------s~em~~l~~i--------------------La~a~~p-sLlLLDEP~sGL 595 (803)
.|++... .+ .| ..||.+.+++ ...+.+| +||+|||||+||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 3332110 00 01 1123333332 2226778 999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 596 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 596 D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
|...+..++ .+++.+.+.|.+|+.+-|.+.
T Consensus 962 DsqaA~~i~-~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 962 DSQAAAIVM-RFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred cHHHHHHHH-HHHHHHHhcCCeEEEEecCCc
Confidence 998777775 888999999999999999975
No 410
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=1.5e-09 Score=135.92 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=111.9
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cc--ccccccccc
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG--LMVPAESAS 542 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G--~~Vpa~~a~ 542 (803)
+...+.+++....|.. .+..+.++|||| |+.++|+||-|||||+||.+|.|-..... .| .|+||+.-.
T Consensus 515 ~~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3445888888777744 344558999998 89999999999999999999999763321 22 355654311
Q ss_pred c--chhHHHh--------------h---------hCCCCC--CccCCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCC
Q 003687 543 I--PYFDAIM--------------L---------HMKSYD--SPADGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRG 594 (803)
Q Consensus 543 i--~~~d~I~--------------~---------~ig~~d--~l~~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sG 594 (803)
+ ..-++|+ . .+...| .+-..-.+++++.+ +++.+.+.-.+.+++|||.|+++
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 1 0011111 1 111111 11122234566654 46666666799999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 595 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 595 LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+|..-+..|....+..+. +++|+|++||..+....++..--+.++.+
T Consensus 674 VDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred hhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecCCeE
Confidence 999999999998885554 47899999998888776665444444443
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=3.6e-10 Score=138.49 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=55.8
Q ss_pred cCCccchHHHHHH-HHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 560 ADGKSSFQVEMSE-IRSIVTATT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 560 ~~~~stfs~em~~-l~~iLa~a~---~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
.....+++.++++ +..+.+.+. +|+++||||||+|||+.+...+. .+++.+.+.|.|+|++||++++...+++
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi~H~~~~i~~aD~ 899 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVIEHNLDVIKTADY 899 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCE
Confidence 3445667777665 444444443 68999999999999999988886 6777777779999999999998765543
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.07 E-value=5.5e-10 Score=137.18 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=57.4
Q ss_pred cCCccchHHHHHH-HHHHHHhCCCC---cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 560 ADGKSSFQVEMSE-IRSIVTATTSR---SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 560 ~~~~stfs~em~~-l~~iLa~a~~p---sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
.....+++.++++ +..+.+.+.+| +++|||||++|||+.+...+. .+++.+.+.|.|+|++||+++....+++
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiitH~~~~i~~aD~ 901 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIEHNLDVIKTADW 901 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhCCE
Confidence 3445677777765 44555556777 999999999999999988886 6777777789999999999998765543
No 413
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.04 E-value=6.1e-10 Score=142.57 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=57.1
Q ss_pred cCCccchHHHHHHHH-HHHHhC---CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003687 560 ADGKSSFQVEMSEIR-SIVTAT---TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 560 ~~~~stfs~em~~l~-~iLa~a---~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~ 635 (803)
.....++|.++++.. .+.+.+ .+|+++||||||+|||+.+...+. .+++.+.+.|.|+|++||+++....+++..
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 344556676666533 333333 699999999999999999988886 777788878999999999999876655443
No 414
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.99 E-value=1.5e-09 Score=108.66 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=87.1
Q ss_pred eeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------------------hhccccccccc--cccc----
Q 003687 495 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES--ASIP---- 544 (803)
Q Consensus 495 ~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------------------aq~G~~Vpa~~--a~i~---- 544 (803)
.+.+.||| |..++|+|.||||||||.|+|+|++.. ++..-.+.++. +.-|
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 45566777 789999999999999999999998721 11111222221 0000
Q ss_pred -hh-----------------HHHhh---hCCCC-CCccCCccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 003687 545 -YF-----------------DAIML---HMKSY-DSPADGKSSFQVEM-SEIRSIVTATTSRSLVLIDEICRGTETAKGT 601 (803)
Q Consensus 545 -~~-----------------d~I~~---~ig~~-d~l~~~~stfs~em-~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~ 601 (803)
+. .+||. .+|.. |........++.+. ++.+.+.+...+|+++|.||...+||...+.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 00 01221 11211 11111222233333 3455666668999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 602 CIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 602 ~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.+...+++.-.+.|...|.+|.++....
T Consensus 187 Ql~NL~LeLQek~GiSyiYV~QhlG~iK 214 (267)
T COG4167 187 QLINLMLELQEKQGISYIYVTQHIGMIK 214 (267)
T ss_pred HHHHHHHHHHHHhCceEEEEechhhHhh
Confidence 9987777766778999999999888765
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.95 E-value=3.6e-09 Score=116.77 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=92.9
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhccc-----------------cccccc-ccc---chhH
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-----------------MVPAES-ASI---PYFD 547 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~-----------------~Vpa~~-a~i---~~~d 547 (803)
..+++.|+|| |++++|+|++|+||||+||+|.|.....-.-. .+|.+. ..+ ...+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 4578999998 89999999999999999999999873221111 122211 011 1112
Q ss_pred H-------------HhhhCCCCCCccC--CccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 003687 548 A-------------IMLHMKSYDSPAD--GKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 611 (803)
Q Consensus 548 ~-------------I~~~ig~~d~l~~--~~stfs~em~~l~~iL-a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L 611 (803)
+ ++.+.|..|.... ..+.++.+.++-..+. ..+..|.+++.||..+.||+..+..++..+-+.-
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 2 3333333333221 1233344444433332 2368899999999999999999999998887777
Q ss_pred HhcCCEEEEEccChhhhh
Q 003687 612 DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 612 ~~~g~tvI~sTH~~eL~~ 629 (803)
.+.|.|.+++||..++.+
T Consensus 555 Re~giTlivvThrpEv~~ 572 (593)
T COG2401 555 REAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHhCCeEEEEecCHHHHh
Confidence 788999999999999875
No 416
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=1.7e-09 Score=116.20 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
+|+++|+|||++++|+.....+. .++..+.+ +.++|++||++++...+++
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEechHHHHHhcCc
Confidence 99999999999999999888886 45555544 7899999999987665543
No 417
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=3.3e-09 Score=106.77 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=50.3
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
++.+..+.++.-+.|||||-++|+|.-+.+++ +++..+.+.|.-+||+||.+-+..+.
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiATHSPiLlAiP 194 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIATHSPILLAIP 194 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEEecChhheeCC
Confidence 44455668999999999999999999999987 99999999999999999998776543
No 418
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.91 E-value=5.7e-09 Score=106.27 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=90.3
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh-----cc-------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG------------- 533 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq-----~G------------- 533 (803)
..|++.|+...| ....+++-|+|+ |.-..++|.||+|||||||+++|-.+..- .|
T Consensus 12 ~aievsgl~f~y---~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 12 FAIEVSGLQFKY---KVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ceEEEeccEEec---ccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 357888876444 344578888887 78999999999999999999999642110 00
Q ss_pred --ccccc-------cccccchh-----HHHhhhCCCCCC-----c--------cCCccchHHHHHH-HHHHHHhCCCCcE
Q 003687 534 --LMVPA-------ESASIPYF-----DAIMLHMKSYDS-----P--------ADGKSSFQVEMSE-IRSIVTATTSRSL 585 (803)
Q Consensus 534 --~~Vpa-------~~a~i~~~-----d~I~~~ig~~d~-----l--------~~~~stfs~em~~-l~~iLa~a~~psL 585 (803)
+|+-. ....+|.. ..+...++..+. + .-.....+.+.++ ...++....+=++
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkV 168 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKV 168 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeE
Confidence 00000 00111110 011111111110 0 0001223334433 4445555667799
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 586 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 586 lLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
+||||.|--||...+..++.-+-++-.++|+||+++||-.+
T Consensus 169 LLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 169 LLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred EEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc
Confidence 99999999999999988885555556678999999999765
No 419
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=1.7e-09 Score=110.17 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=86.9
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhH----------------------------hhhhcccccccc
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------------LLGICGLMVPAE 539 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~----------------------------~laq~G~~Vpa~ 539 (803)
+...+.+.+|+ |++-+++|.+|||||-..|.|+|.. ++++..+.+.++
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 44567777777 8999999999999999999999985 111122222222
Q ss_pred ccc---------------cchh-----------------HHHhhhCCCCCCccCCccch-----HHHHHHHHHHHHhCCC
Q 003687 540 SAS---------------IPYF-----------------DAIMLHMKSYDSPADGKSSF-----QVEMSEIRSIVTATTS 582 (803)
Q Consensus 540 ~a~---------------i~~~-----------------d~I~~~ig~~d~l~~~~stf-----s~em~~l~~iLa~a~~ 582 (803)
... +|.. -.++.++|..|.-.. .+.+ .+|-+++..+++.+.+
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI-M~SYP~ElTeGE~QKVMIA~A~Anq 176 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI-MRSYPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH-HHhCcchhccCcceeeeeehhhccC
Confidence 100 0000 012233333322110 0111 1233344456677899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccChhhhh
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~~eL~~ 629 (803)
|.|+|.||||+.+++.....+. .++..+ .+.|.++++++||+....
T Consensus 177 PrLLIADEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~is 223 (330)
T COG4170 177 PRLLIADEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMIS 223 (330)
T ss_pred CceEeccCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHHH
Confidence 9999999999999999999987 566665 456899999999987653
No 420
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.5e-09 Score=114.73 Aligned_cols=159 Identities=17% Similarity=0.175 Sum_probs=101.8
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------------------hhhc
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGIC 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------------------laq~ 532 (803)
.+.+.+++-.| .+.++++++++| |+.++|+||+|+||||++|.+-.+.. +...
T Consensus 262 ~v~F~~V~F~y---~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 262 AVAFINVSFAY---DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred eEEEEEEEeec---cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 35666665443 567899999999 89999999999999999999988751 1112
Q ss_pred cccccccccccchhHHHhhhCCC--C-----------------CCc------------cCCccchHHHHHHHHHHHHhCC
Q 003687 533 GLMVPAESASIPYFDAIMLHMKS--Y-----------------DSP------------ADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 533 G~~Vpa~~a~i~~~d~I~~~ig~--~-----------------d~l------------~~~~stfs~em~~l~~iLa~a~ 581 (803)
...||++...+. |-++..++- . +.+ +.+..--..|.++++.+.....
T Consensus 339 Ig~VPQDtvLFN--Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 339 IGIVPQDTVLFN--DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred hCcCcccceehh--hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 233555432221 111111110 0 000 0011111235556777777789
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccccee
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 642 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m 642 (803)
+|+++++||.||.||...-.+|. +-++.+. .|.|.+++-|-+.-..-++....+.++..
T Consensus 417 ~p~il~~deatsaldt~te~~iq-~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i 475 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQ-AALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRI 475 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEE
Confidence 99999999999999999888875 5555554 57899999998876655554444444443
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.85 E-value=5.6e-08 Score=111.30 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=100.3
Q ss_pred ceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhh--------h----hcccccccc
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G----ICGLMVPAE 539 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~l--------a----q~G~~Vpa~ 539 (803)
..++++++.-.- ..++..+..+++| |.-+.|+||||||||+|||+++|+--. . ..-.|+|+.
T Consensus 432 n~i~~e~v~l~t--Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 432 NAIEFEEVSLST--PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ceEEeeeeeecC--CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 467777664111 1236677888998 899999999999999999999998621 1 123467775
Q ss_pred ccc-c---------ch-----------------------hHHHhhhCCCCC--CccCCccchH-HHHHHHHHHHHhCCCC
Q 003687 540 SAS-I---------PY-----------------------FDAIMLHMKSYD--SPADGKSSFQ-VEMSEIRSIVTATTSR 583 (803)
Q Consensus 540 ~a~-i---------~~-----------------------~d~I~~~ig~~d--~l~~~~stfs-~em~~l~~iLa~a~~p 583 (803)
+-. + |. ...+..+.|..+ ........++ +|+++++-+.-...+|
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence 411 1 10 011223333322 2222233444 3667777777778999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
++.||||-|+++|...-.++. +...+.|.|.|-++|-..+.+..+
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Y----r~~r~~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALY----RKCREMGITFISVGHRKSLWKFHD 634 (659)
T ss_pred ceEEeechhhhccHHHHHHHH----HHHHHcCCeEEEeccHHHHHhhhh
Confidence 999999999999987654444 556778999999999888876543
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=1.7e-08 Score=126.55 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=108.2
Q ss_pred eEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh------------hhhc--------
Q 003687 477 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------LGIC-------- 532 (803)
Q Consensus 477 ~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~------------laq~-------- 532 (803)
.|+++|++-.|. .+...|++++|+ |+-+||+|..|||||||+.++-.++. +.+.
T Consensus 1138 ~I~f~~~~~RYr--p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYR--PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred eEEEEEeEEEeC--CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 588999876663 345789999999 79999999999999999999998862 1222
Q ss_pred ccccccccccc--------chh-----HHHhh------------h--CCCCCCccCCccchHHHHHHH-HHHHHhCCCCc
Q 003687 533 GLMVPAESASI--------PYF-----DAIML------------H--MKSYDSPADGKSSFQVEMSEI-RSIVTATTSRS 584 (803)
Q Consensus 533 G~~Vpa~~a~i--------~~~-----d~I~~------------~--ig~~d~l~~~~stfs~em~~l-~~iLa~a~~ps 584 (803)
-..+||++..+ .++ ++|.. . .+..-.+..+-+.||.+.+|+ ..+.+.+.+.+
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 23467765322 111 11211 1 122223445557899998884 45666789999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccce
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 641 (803)
Q Consensus 585 LlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~ 641 (803)
+++|||.|++.|+..-.-|-..|-+.++ +||||.+-|.++-....++.-.+..+.
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCe
Confidence 9999999999999864444333333343 699999999887665555443333333
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.73 E-value=8.1e-08 Score=99.17 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 579 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
...+.+++||||+.++||......++ .++..+.+ +.-+|++||..++...++.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEEEEE-S-HHHHTT-SE
T ss_pred cccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccc
Confidence 46788999999999999999988876 66666543 4789999999998877653
No 424
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.71 E-value=1.6e-07 Score=106.45 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhh---------hcccccccccc-ccch-hHHHh------
Q 003687 492 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESA-SIPY-FDAIM------ 550 (803)
Q Consensus 492 ~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~la---------q~G~~Vpa~~a-~i~~-~d~I~------ 550 (803)
.+..+.+.++| |.-+.||||||||||+|+|+++|+--.- +...|+|+.+- ..+- .|+|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e 572 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSE 572 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHH
Confidence 35567777777 7889999999999999999999986332 22345555431 0100 01111
Q ss_pred -------------------------hhCCCCCCccCCccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 003687 551 -------------------------LHMKSYDSPADGKSSFQVEM-SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 604 (803)
Q Consensus 551 -------------------------~~ig~~d~l~~~~stfs~em-~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~ 604 (803)
.+-+..|.+.....-++.+. +++..+.-.-.+|...+|||-|++..+.--.
T Consensus 573 ~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~--- 649 (728)
T KOG0064|consen 573 QMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG--- 649 (728)
T ss_pred HHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH---
Confidence 11111111111112223333 3344444447899999999999999886433
Q ss_pred HHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 605 GSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 605 ~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
.+.+..++.|.+.|-+||...+-.+
T Consensus 650 -~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 650 -KIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred -HHHHHHHhcCceEEEeecCccHHHH
Confidence 4446667889999999999887654
No 425
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.9e-07 Score=107.16 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=101.5
Q ss_pred cceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh---------------------h
Q 003687 475 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------L 529 (803)
Q Consensus 475 ~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~---------------------l 529 (803)
...++++++... ..++|+|| ||+++|.|-=|+|+|-++++|.|+.- +
T Consensus 261 ~~~l~v~~l~~~--------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 261 EPVLEVRNLSGG--------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred CcEEEEecCCCC--------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 345667777522 14577777 99999999999999999999999641 1
Q ss_pred hhcccccccccc---ccc---hhHHH--------------------------hhhCCCC-CCccCCccchHHHHHH-HHH
Q 003687 530 GICGLMVPAESA---SIP---YFDAI--------------------------MLHMKSY-DSPADGKSSFQVEMSE-IRS 575 (803)
Q Consensus 530 aq~G~~Vpa~~a---~i~---~~d~I--------------------------~~~ig~~-d~l~~~~stfs~em~~-l~~ 575 (803)
.....|||.+.. .+. ..+++ ..+++.. -+......++|.+-+| +..
T Consensus 333 ~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred HcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHH
Confidence 112235554321 111 11111 0011110 0111223445554433 333
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChh-hhhCcccccccccceeEE
Q 003687 576 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 576 iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e-L~~~~~~~~~v~~~~m~~ 644 (803)
.--.+++|+++||||||+|.|.....+|. .+++.+.++|..||++|-+++ +..++++.-.+..+.+..
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eIy-~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEIY-RLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHHH-HHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 33347999999999999999999999986 999999999999998888764 555777655555554443
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.65 E-value=9e-08 Score=102.95 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=61.7
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhh-----ccccccc-----c----ccccchhHHHhhhCCCCCCccCCccchHHH
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGI-----CGLMVPA-----E----SASIPYFDAIMLHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq-----~G~~Vpa-----~----~a~i~~~d~I~~~ig~~d~l~~~~stfs~e 569 (803)
.-++|+||||||||||+|++++++.... .|..+-. + ...+++. .+..++.+.++..+ ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k-----~~~ 185 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPK-----AEG 185 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchH-----HHH
Confidence 4689999999999999999999874221 1111110 0 0111111 11112222111100 111
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 570 m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
| ..+.++.+|+++|+|||++. +...++++.+. .|.++|++||+.++...
T Consensus 186 ~----~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 186 M----MMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred H----HHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 2 22233579999999999742 22345666654 59999999998776543
No 427
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.4e-07 Score=106.89 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=94.0
Q ss_pred EEEecccccccccCCCc-eeccccCC----CceEEEEecCCCChhHHHHHHHhhHh-hh---------hccccccccc--
Q 003687 478 LKMNGLSPYWFDAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LG---------ICGLMVPAES-- 540 (803)
Q Consensus 478 i~l~~l~p~~~~~~~~~-~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~-la---------q~G~~Vpa~~-- 540 (803)
+.+..+... +..+. .++..+++ .+-++++|+||.||||++|++.+-.. .. ..+.+ .+..
T Consensus 363 l~i~~V~f~---y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f-~Qhhvd 438 (582)
T KOG0062|consen 363 LRISYVAFE---YTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYF-AQHHVD 438 (582)
T ss_pred eEEEeeecc---CCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecch-hHhhhh
Confidence 555555432 33344 45666666 46789999999999999999987321 00 00100 0000
Q ss_pred -----------------cccc-hhHHHhhhCCCCCCcc-CCccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 003687 541 -----------------ASIP-YFDAIMLHMKSYDSPA-DGKSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKG 600 (803)
Q Consensus 541 -----------------a~i~-~~d~I~~~ig~~d~l~-~~~stfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g 600 (803)
+..+ ....-+..+|....+. ....++|++.+ +++.+.....+|.|++|||||+.||...-
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl 518 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSL 518 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHH
Confidence 0000 0112334455544332 33455666543 45555555799999999999999999764
Q ss_pred HHHHHHHHHHHHhcCCEEEEEccChhhhhC-ccccccccccee
Q 003687 601 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAM 642 (803)
Q Consensus 601 ~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~-~~~~~~v~~~~m 642 (803)
. ++.+.+++-+..||++|||.++... +.....+.+++|
T Consensus 519 ~----AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 519 G----ALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred H----HHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 4 5556677777789999999998764 333333344444
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=2.3e-07 Score=109.75 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=49.8
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccc
Q 003687 578 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 634 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~ 634 (803)
.+.+.+.|.||||||.||-+.+-..|+ .++..|.+.|.|||++-|+++....++..
T Consensus 839 k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 839 KRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred hccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 347888999999999999999999987 89999999999999999999988776643
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7.2e-08 Score=106.82 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=44.0
Q ss_pred chHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 565 SFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 565 tfs~em~-~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
.|+.+.+ +++.+.+....|.|++|||||+.||...-.. +-.||.....|.++++||..+.+
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIW----LdNYLQgWkKTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVSHDQGFLD 473 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeee----hhhHHhhhhheeEEEecccchHH
Confidence 4555543 2444556678999999999999999864332 33566666789999999987654
No 430
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.56 E-value=2.7e-07 Score=118.97 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=55.2
Q ss_pred cchHH-HHHHHHHHHHhC---CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccc
Q 003687 564 SSFQV-EMSEIRSIVTAT---TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 635 (803)
Q Consensus 564 stfs~-em~~l~~iLa~a---~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~ 635 (803)
.++|. |.++++.+-... ..+.|+||||||.||++.+-..++ .+++.|.+.|.|+|++.|++++...++...
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivieH~~~~i~~aD~ii 1772 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYIDHDPALLKQADYLI 1772 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhCCEEE
Confidence 44554 344444433332 347999999999999999999987 888999999999999999999988776543
No 431
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.54 E-value=3.6e-07 Score=96.07 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=67.5
Q ss_pred cCCCceEEEEecCCCChhHH-HHHHHhhHhhhhccccccccccccchhHHHhhhCCC-------CCCccC-Cc-cchHH-
Q 003687 500 VDMQSLFLLTGPNGGGKSSL-LRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS-------YDSPAD-GK-SSFQV- 568 (803)
Q Consensus 500 IsLGeii~ItGPNGsGKSTL-LR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~-------~d~l~~-~~-stfs~- 568 (803)
+.-|++++|+|+||+||||| ++.+.++......+.|+..+...-....+ ...++. .+.+.. .. ..++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 44488999999999999999 67777765433344455433211111111 111221 001000 00 00111
Q ss_pred -HHH-HHHHHHHh--CCCCcEEEEeCCCCCC----ChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 569 -EMS-EIRSIVTA--TTSRSLVLIDEICRGT----ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 569 -em~-~l~~iLa~--a~~psLlLLDEP~sGL----D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
+.. .+..++.. ..+|+++++|||++++ |+.....+. .+++.+.+.|.++++ ||+..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~-t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIIL-TANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEE-Eeccc
Confidence 111 12223332 3589999999999998 666555664 677777777886655 55543
No 432
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.49 E-value=3e-07 Score=92.68 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHH---hCCCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003687 567 QVEMSEIRSIVT---ATTSR-SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 567 s~em~~l~~iLa---~a~~p-sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~ 628 (803)
+.+.+++..++. .+... .++++|||-++|.|.....++ .++..+.+.+.-+|++||...+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 556666533322 23444 999999999999999888887 56665555678999999998764
No 433
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.46 E-value=7.3e-07 Score=85.67 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=67.4
Q ss_pred eEEEEecCCCChhHHHHHHHhhHhh-hhccccccccccccchhHH--HhhhCCCCCCccC--Ccc-c-hHHHHHHHHHHH
Q 003687 505 LFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDA--IMLHMKSYDSPAD--GKS-S-FQVEMSEIRSIV 577 (803)
Q Consensus 505 ii~ItGPNGsGKSTLLR~Iagl~~l-aq~G~~Vpa~~a~i~~~d~--I~~~ig~~d~l~~--~~s-t-fs~em~~l~~iL 577 (803)
+++|+||||+||||+++.+++.... .....++..+......... .+......+.... ... . ......++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999886532 1111233332221111111 0111111111110 001 1 111222333445
Q ss_pred HhCCCCcEEEEeCCCCCCChHH---------HHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 578 TATTSRSLVLIDEICRGTETAK---------GTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 578 a~a~~psLlLLDEP~sGLD~~~---------g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
....++.++++||+++-++... ....+..+.+..++.++++|+++|....
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 5578999999999995443321 2333457777777779999999998753
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=9.7e-07 Score=94.75 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
..+|+++|+|||+++||+.....+. +.+.+.+ .++++||+.+
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~-q~ii~~~~~~ 249 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEGRV-QTFVTTTDLA 249 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCC-CEEEEeCCch
Confidence 4799999999999999998877665 3333334 3555555544
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.34 E-value=2.1e-06 Score=85.84 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=38.2
Q ss_pred CCCCcEEEEeCCCCCCC---hHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 580 TTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD---~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
..+|+++++|||++.+| ......+ ..+++.+++.|.++|+++|....
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEEEeccccC
Confidence 46899999999999998 5444444 47778888889999999998765
No 436
>PRK13695 putative NTPase; Provisional
Probab=98.31 E-value=2.2e-06 Score=85.63 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcc
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 632 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~ 632 (803)
..+|+++|+|||+ .++..+ ..+. ..++.+.+.+.++|+++|+.......+
T Consensus 94 l~~~~~lllDE~~-~~e~~~-~~~~-~~l~~~~~~~~~~i~v~h~~~~~~~~~ 143 (174)
T PRK13695 94 LEEADVIIIDEIG-KMELKS-PKFV-KAVEEVLDSEKPVIATLHRRSVHPFVQ 143 (174)
T ss_pred cCCCCEEEEECCC-cchhhh-HHHH-HHHHHHHhCCCeEEEEECchhhHHHHH
Confidence 5789999999974 333332 3333 444444467899999999865544333
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.28 E-value=8.6e-06 Score=74.83 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=60.4
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh-ccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHH--h
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT--A 579 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq-~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa--~ 579 (803)
+..+.|+||+|+||||+++.++....... ...++..+........... ........... ........++. .
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASG-SGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCC-CHHHHHHHHHHHHH
Confidence 35789999999999999999987653332 1122222211111100000 00000000011 11112222222 2
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHH-----HHHHHHHhcCCEEEEEccC
Q 003687 580 TTSRSLVLIDEICRGTETAKGTCIAG-----SIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~L~~-----~ILe~L~~~g~tvI~sTH~ 624 (803)
...+.+|++||+.+-.+......... .........+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 33479999999999999876554432 1223334456788888885
No 438
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=98.15 E-value=2.5e-08 Score=119.04 Aligned_cols=293 Identities=24% Similarity=0.187 Sum_probs=187.3
Q ss_pred CceeccccCCCceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHH
Q 003687 493 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 572 (803)
Q Consensus 493 ~~~VlndIsLGeii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~ 572 (803)
...+.+|+.......-+++|++|+|. ++-+.-.......+.+.|.....++.++++-.++..... ...+.|...+..
T Consensus 744 ~si~~~~vGk~~y~lEvP~n~~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~--d~~~r~~~~f~~ 820 (1125)
T KOG0217|consen 744 SSIVFVDVGKDVYQLEVPENGGVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLS--DLKRRLIVRFDE 820 (1125)
T ss_pred CceeEeecCceEEEEecCcccCCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Confidence 34555666666788999999999999 555544444555677888888777777766555432221 111222222221
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHH----HHHHHHHHHHHHhcCCEEEEEccChhhhhCccc----ccccccceeEE
Q 003687 573 IRSIVTATTSRSLVLIDEICRGTETAKG----TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK----IKNAAYKAMGT 644 (803)
Q Consensus 573 l~~iLa~a~~psLlLLDEP~sGLD~~~g----~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~----~~~v~~~~m~~ 644 (803)
.. +.-+++-..+..+|+.++.+-...+ .... .+.+.... ....++.+|-|--...... .+|.....+..
T Consensus 821 ~~-~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp-~i~~~~dt-~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~ 897 (1125)
T KOG0217|consen 821 HY-IIWQATVKALASIDCLLSLAETSKGLGGPMCRP-EIVESTDT-PGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAE 897 (1125)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc-eeecccCC-CceeEEecccCceeecCcCCCccccchhhccccc
Confidence 11 1111222234455666655544432 1111 12222222 2256677776655443332 33333332222
Q ss_pred EEeCC-ceeeeeEEeeCCCCCchHHHHHHHcC--CCHHHHHHHH--HHHHHh----------------------------
Q 003687 645 EYLDG-QTVPTWKLVDGICRESLAFETAKREG--VPETIIQRAE--DLYIAC---------------------------- 691 (803)
Q Consensus 645 ~~~~~-~l~~tYkL~~G~~~~S~al~iA~~~G--lp~~Ii~rA~--~~~~~~---------------------------- 691 (803)
....+ -.-|+.....+.++++-...|+...| +|.++++.+- .+...+
T Consensus 898 e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT 977 (1125)
T KOG0217|consen 898 ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHAT 977 (1125)
T ss_pred cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcC
Confidence 11112 12366777777888888888999999 9999887754 233332
Q ss_pred --------c-----------------ccchhcccccCCCccc-cccceeEEeecC-CccccccccCChhh-HHHhhhccc
Q 003687 692 --------G-----------------VNCVMIAAREQPPPSI-IGASCVYVMLRP-DKKLYIGQTDDLDG-RIRAHRGKE 743 (803)
Q Consensus 692 --------~-----------------~~~~~~~~~~~~~p~~-~~~~~vy~~~~~-~~~~y~~~~d~l~~-r~~~~r~~~ 743 (803)
+ ..+...+.++.+++++ -+..|+|+++.| .+.+|.+..+|.+. +...||..+
T Consensus 978 ~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~ 1057 (1125)
T KOG0217|consen 978 RHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEE 1057 (1125)
T ss_pred ccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhcc
Confidence 0 0111223556678888 788899999988 68889999999988 778899899
Q ss_pred CcccceeEEEeeCCchHHHHHHHHHHhhhhcccccccccccCCccccc
Q 003687 744 GMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFG 791 (803)
Q Consensus 744 ~~~~~~~~~~~~~~k~~~~~le~~~~~~L~~~~~~l~~~~d~~~~~~~ 791 (803)
|.+--++.|-.+.++++.+|+.+..++++...+..+.|.+|++||+|+
T Consensus 1058 G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~~~~d~~~r~~~ 1105 (1125)
T KOG0217|consen 1058 GICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSANAADGKIREVV 1105 (1125)
T ss_pred CCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 998888888888899999999999999999999999999999999999
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.12 E-value=1.5e-05 Score=83.43 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCceEEEEecCCCChhHHHHHHHhh-HhhhhccccccccccccchhHHHhhhCCC--CCCccC-----------Cccch
Q 003687 501 DMQSLFLLTGPNGGGKSSLLRSICAA-SLLGICGLMVPAESASIPYFDAIMLHMKS--YDSPAD-----------GKSSF 566 (803)
Q Consensus 501 sLGeii~ItGPNGsGKSTLLR~Iagl-~~laq~G~~Vpa~~a~i~~~d~I~~~ig~--~d~l~~-----------~~stf 566 (803)
--|+++.|+|++|+|||||..+++-- +.....+.|+..+...-....+ +..++. .+.+.. .....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccC
Confidence 33789999999999999999998532 2223344455443221111111 111211 111000 00111
Q ss_pred HHHHHHHHHH-HHh--CCCCcEEEEeCCCCCCC---hHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 567 QVEMSEIRSI-VTA--TTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 567 s~em~~l~~i-La~--a~~psLlLLDEP~sGLD---~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
...+.++... ... ..+++++++|||++.+| ...-..+. ..+..+.+.|.++++++|....
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l-~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFL-TEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcC
Confidence 2223333222 222 25899999999996544 33323333 2345556678999999997643
No 440
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=9.1e-06 Score=100.45 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=64.4
Q ss_pred hhhCCCCCC-ccCCccchHHHHHH-HHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 550 MLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 550 ~~~ig~~d~-l~~~~stfs~em~~-l~~iLa~a~~--psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+..++.... +.....++|.++++ +..+.+.+.+ |.++||||||+|||+.+...+. .+++.+.+.|.|||+++|+.
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCH
Confidence 344555332 45667788887776 4444444555 4899999999999999998886 88888888899999999999
Q ss_pred hhhhCccccccc
Q 003687 626 GIFSLPLKIKNA 637 (803)
Q Consensus 626 eL~~~~~~~~~v 637 (803)
+....+++...+
T Consensus 550 ~~i~~aD~vi~L 561 (924)
T TIGR00630 550 ETIRAADYVIDI 561 (924)
T ss_pred HHHhhCCEEEEe
Confidence 987765544333
No 441
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.07 E-value=1.1e-05 Score=100.07 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred HhhhCCCCCC-ccCCccchHHHHHH-HHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccC
Q 003687 549 IMLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 549 I~~~ig~~d~-l~~~~stfs~em~~-l~~iLa~a~~p--sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~ 624 (803)
.+..++.... +.....+++.+++| +..+.+.+.+| .++||||||+|||+.+...+. .+++.+++.|.|||++||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCC
Confidence 3445565433 45667788887766 44444445554 999999999999999999886 8888888889999999999
Q ss_pred hhhhhCccccccc
Q 003687 625 HGIFSLPLKIKNA 637 (803)
Q Consensus 625 ~eL~~~~~~~~~v 637 (803)
.+....+++...+
T Consensus 551 ~~~i~~aD~vi~L 563 (943)
T PRK00349 551 EDTIRAADYIVDI 563 (943)
T ss_pred HHHHHhCCEEEEe
Confidence 9987655544333
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.03 E-value=1.9e-05 Score=81.13 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=56.9
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccc-cccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~ 582 (803)
.+++|+||+||||||+++.+.+.......+..+.-+. ..+. .......+.. ..+.....+|... +..++ ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~q-~~vg~~~~~~~~~---i~~aL--r~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLINQ-REVGLDTLSFENA---LKAAL--RQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceeee-cccCCCccCHHHH---HHHHh--cCC
Confidence 3689999999999999998876543221221111110 0000 0000000000 0000111122211 22222 368
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 583 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 583 psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
|+++++||+. |.+. +..+++. ...|..++.++|..+...
T Consensus 75 pd~ii~gEir---d~e~----~~~~l~~-a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMR---DLET----IRLALTA-AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCC---CHHH----HHHHHHH-HHcCCEEEEEecCCcHHH
Confidence 9999999995 5543 2233443 457899999999876543
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.99 E-value=8.6e-06 Score=90.88 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=82.3
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhc-------cccccccc-----cccch--------------h-HHHhhhCCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------GLMVPAES-----ASIPY--------------F-DAIMLHMKS 555 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~-------G~~Vpa~~-----a~i~~--------------~-d~I~~~ig~ 555 (803)
.+++..+|.||.|||||+|+++|....... -++-|+.. ..+.+ | ..+...+..
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 478999999999999999999995421111 11222221 11111 0 111111222
Q ss_pred CCCccCCccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 556 YDSPADGKSSFQ-VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 556 ~d~l~~~~stfs-~em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
++-+.+...+.+ .|+++.+.++..-...++.++|||.+-||.+.+...+..+.+.+...+.|-+++-||.-++.+
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 222222233333 366778888887788899999999999999877776655555566778899999999877654
No 444
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=3.5e-05 Score=95.98 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=85.9
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHHhhHh--------hhhccc----ccc-ccccccchhHHHhhhCCCC
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------LGICGL----MVP-AESASIPYFDAIMLHMKSY 556 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~--------laq~G~----~Vp-a~~a~i~~~d~I~~~ig~~ 556 (803)
..+++|++. |+++.+.||.|||||||||.++|-.. +.-.|. +++ ...+++++.|--+..|++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 468899987 89999999999999999999999761 111222 223 2335566666555556555
Q ss_pred CCccCCcc------chH----HH----HHH-HHHHH------------------------------HhCCCCcEEEEeCC
Q 003687 557 DSPADGKS------SFQ----VE----MSE-IRSIV------------------------------TATTSRSLVLIDEI 591 (803)
Q Consensus 557 d~l~~~~s------tfs----~e----m~~-l~~iL------------------------------a~a~~psLlLLDEP 591 (803)
+.+....+ ... .+ +.+ +..++ ..+.+++++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 54432110 000 00 111 11111 11678999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 592 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 592 ~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
++|||.....+++..+.+.-+..+.|.+++-|..
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQP 321 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccC
Confidence 9999999999998555444455688999988875
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.82 E-value=3.5e-05 Score=84.53 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=57.5
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchh-HHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF-DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~-d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~ 581 (803)
++.++|+||||||||||++.+++..... .+...-.+...+... .+.. .+..... ..+.. ...+.++... ....
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~-~l~~~~~-~~~~~--~~~~~~~l~~-~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYV-HLFYSKG-GQGLA--KVTPKDLLQS-CLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEE-EEEecCC-CCCcC--ccCHHHHHHH-HhcC
Confidence 5689999999999999999998764211 111000010000000 0000 0000000 00100 1122222111 2248
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+|+++++|||.. .+. ..+++.+...+..++.++|..+....
T Consensus 218 ~pd~ii~gE~r~-------~e~-~~~l~a~~~g~~~~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 218 RPDRIILGELRG-------DEA-FDFIRAVNTGHPGSITTLHAGSPEEA 258 (308)
T ss_pred CCCeEEEeccCC-------HHH-HHHHHHHhcCCCeEEEEEeCCCHHHH
Confidence 999999999995 222 35566665433456999998775443
No 446
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.77 E-value=0.00015 Score=86.02 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=73.7
Q ss_pred chHHHHH-HHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccccccccc
Q 003687 565 SFQVEMS-EIRSIVTATT----SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 639 (803)
Q Consensus 565 tfs~em~-~l~~iLa~a~----~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~ 639 (803)
.++.+++ ++..+++.+. +|+++|+|||++|+|+.....+. .++..+.+ +.+||++||++.++..+++...+..
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 4455544 4555555543 47999999999999999888886 66677764 7999999999998876554322221
Q ss_pred ceeEEEEeCCceeeeeEEeeCCCCCchHHHHHHHcC---CCHHHHHHHHHHHH
Q 003687 640 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 689 (803)
Q Consensus 640 ~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~G---lp~~Ii~rA~~~~~ 689 (803)
. ..++ -|+.-+.-..++----++|+|+| +.+.-++-|++++.
T Consensus 518 ~-----~~~~---~t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll~ 562 (563)
T TIGR00634 518 E-----GLDG---RTATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELLE 562 (563)
T ss_pred c-----cCCC---cEEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 1 1111 12222222233344468999993 45777888888753
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.76 E-value=0.00012 Score=68.18 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=58.5
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH--HHHHHHHHHhC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE--MSEIRSIVTAT 580 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e--m~~l~~iLa~a 580 (803)
+..+.|+||.|+||||+++.++.... +.+..+ ..+. .......... ....+ ...........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v----~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 82 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF--RPGAPF----LYLN-ASDLLEGLVV---------AELFGHFLVRLLFELAEK 82 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCe----EEEe-hhhhhhhhHH---------HHHhhhhhHhHHHHhhcc
Confidence 35789999999999999999987653 111100 0000 0000000000 00000 11222333446
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-----hcCCEEEEEccChhh
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLD-----NIGCLGIVSTHLHGI 627 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~-----~~g~tvI~sTH~~eL 627 (803)
.++.++++||.-.. ++.....+. .+++.+. ..++.+|++|+....
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNALL-RVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHHH-HHHHhcCceeccCCCeEEEEecCcccc
Confidence 78899999999876 343444444 4445443 257888999987653
No 448
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.75 E-value=0.00014 Score=83.47 Aligned_cols=144 Identities=12% Similarity=0.118 Sum_probs=78.0
Q ss_pred CceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhhcccccc-c-cccccchhHHHhh-hCCC---CCCcc-C
Q 003687 493 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP-A-ESASIPYFDAIML-HMKS---YDSPA-D 561 (803)
Q Consensus 493 ~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vp-a-~~a~i~~~d~I~~-~ig~---~d~l~-~ 561 (803)
+..+++++ + |+.++|+|+||+|||||+++|++..... .|.+.- . ....+. .+.. .++. ...+. .
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~gvI~~~Gerg~ev~---e~~~~~l~~~~l~r~v~vv 219 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD-LNVIALIGERGREVR---EFIERDLGPEGLKRSIVVV 219 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEEecCCccHH---HHHHhhcChhhhcCeEEEE
Confidence 44566666 5 8999999999999999999999875221 121110 0 000011 1111 0111 01110 0
Q ss_pred CccchHHHHHH--------HHHHHHhCCCCcEEEEe-----------------CC--CCCCChHHHHHHHHHHHHHHH--
Q 003687 562 GKSSFQVEMSE--------IRSIVTATTSRSLVLID-----------------EI--CRGTETAKGTCIAGSIIETLD-- 612 (803)
Q Consensus 562 ~~stfs~em~~--------l~~iLa~a~~psLlLLD-----------------EP--~sGLD~~~g~~L~~~ILe~L~-- 612 (803)
..+.-+..++. ++.-++.-...=|+++| || ++|+||.....+. .+++.+.
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~-~ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP-KLLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHHHhcCC
Confidence 01111111111 11122223455667777 75 7899998777765 8888876
Q ss_pred hcCC-----EEEEEccChhhhhCcccccccccceeE
Q 003687 613 NIGC-----LGIVSTHLHGIFSLPLKIKNAAYKAMG 643 (803)
Q Consensus 613 ~~g~-----tvI~sTH~~eL~~~~~~~~~v~~~~m~ 643 (803)
+.|. ||++.+||++. ..+++...+..+++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Iv 333 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFV 333 (438)
T ss_pred CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEE
Confidence 3575 99999999874 444444444444444
No 449
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.72 E-value=0.00045 Score=78.96 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=100.2
Q ss_pred CcceEEEecccccccccCCCceeccccCC----CceEEEEecCCCChhHHHHHHHhhHhhhh------------------
Q 003687 474 GANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------ 531 (803)
Q Consensus 474 g~~~i~l~~l~p~~~~~~~~~~VlndIsL----Geii~ItGPNGsGKSTLLR~Iagl~~laq------------------ 531 (803)
++..+++++++-.- ..+...+.++|| |++++|.|-.|-|-+.|+..|+|+.....
T Consensus 254 g~~vL~V~~L~v~~---~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 254 GEVVLEVEDLSVKD---RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCeEEEEeeeEeec---CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 45567888876321 233567889999 89999999999999999999999962111
Q ss_pred ----ccccccccc---cccc---hhHHH-hh---------------------------hCCCC-CCccCCccchHHH-HH
Q 003687 532 ----CGLMVPAES---ASIP---YFDAI-ML---------------------------HMKSY-DSPADGKSSFQVE-MS 571 (803)
Q Consensus 532 ----~G~~Vpa~~---a~i~---~~d~I-~~---------------------------~ig~~-d~l~~~~stfs~e-m~ 571 (803)
...|||.+. +.++ ..+++ +. .+.+. .+.......+|.+ ++
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 112455432 1111 11111 11 11111 0111112233332 23
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhh-hhCcccccccccc
Q 003687 572 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYK 640 (803)
Q Consensus 572 ~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL-~~~~~~~~~v~~~ 640 (803)
++........+|+|+|+.+||+|||......+. .-+-..++.|+.|+++|-+++. ..++++...+..+
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~-~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIH-ERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHH-HHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 333344448999999999999999998777776 4445556779999999998865 4666655444443
No 450
>PRK04296 thymidine kinase; Provisional
Probab=97.72 E-value=0.00023 Score=72.76 Aligned_cols=114 Identities=19% Similarity=0.054 Sum_probs=59.7
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh-ccccc-cccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMV-PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq-~G~~V-pa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a 580 (803)
|.++.|+||.|+||||++..++.-...+. ...++ |.-..... ...+..+++..-.. ............+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 57899999999999998876654332211 11112 11000101 11233344321000 000111111111111 34
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 581 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
.+.++|++||.-. ++.. .+ ..+++.+++.|.++|++.++.+
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCeEEEEecCcc
Confidence 5779999999932 4332 23 3677888889999999999943
No 451
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.71 E-value=4.3e-05 Score=85.51 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 569 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 569 em~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
|+++.+.++..+...++.++|||.+-||...+...+ ..++.+.+...-+|++-||+...++...
T Consensus 218 elqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA-~~IRsl~~p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 218 ELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA-ITIRSLINPDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred hhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH-HHHHHhhCCCCeEEEEEeechHHHhhhc
Confidence 455566666668999999999999999999888876 7888888888999999999998876543
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=97.71 E-value=0.00024 Score=83.94 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCcccccccccceeEE
Q 003687 569 EMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 644 (803)
Q Consensus 569 em~~l~~iLa~a----~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~~~~v~~~~m~~ 644 (803)
+.+++..+++.+ .+|+++|+|||++|+|...+..+. .++..+.+ +.++|++||++.++.+++.+..+...
T Consensus 435 e~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k~---- 508 (553)
T PRK10869 435 ELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSKE---- 508 (553)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEecc----
Confidence 344555555544 368999999999999999888886 67777754 68999999999988766544322211
Q ss_pred EEeCCceeeeeEEeeCCCCCchHHHHHHHcC---CCHHHHHHHHHHHH
Q 003687 645 EYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 689 (803)
Q Consensus 645 ~~~~~~l~~tYkL~~G~~~~S~al~iA~~~G---lp~~Ii~rA~~~~~ 689 (803)
. .+. .||.-..-..++----++|+|+| +.+.-++-|++++.
T Consensus 509 -~-~~~--~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 509 -T-DGG--MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred -c-cCC--eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 1 111 12222222233344568999993 46777888888753
No 453
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.65 E-value=9.3e-05 Score=76.22 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=28.1
Q ss_pred hCCCCcEEEEeCCC-----CCCChHHHHHHHHHHHHHHHh
Q 003687 579 ATTSRSLVLIDEIC-----RGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 579 ~a~~psLlLLDEP~-----sGLD~~~g~~L~~~ILe~L~~ 613 (803)
.+.+|+++++|||+ +|+|+.....+. .++..+++
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 46899999999999 999999888876 66666653
No 454
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.65 E-value=0.00017 Score=80.43 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=57.3
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccc-cccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~-a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~ 581 (803)
+.+++|+||+||||||+|+.+.+.+.-...+..+.-+. ..+. .+.....+... .+.....+|... ++.++ -.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~-evg~~~~~~~~~---l~~~l--r~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQR-EVGLDTLSFANA---LRAAL--RE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEcc-ccCCCCcCHHHH---HHHhh--cc
Confidence 57999999999999999999876542111121111110 0000 00000000000 000001122111 22222 37
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhh
Q 003687 582 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 628 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~ 628 (803)
+|++|++||+. |+..... .++ ....|..++.++|-.+..
T Consensus 195 ~pd~i~vgEir---d~~~~~~----~l~-aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 DPDVILIGEMR---DLETVEL----ALT-AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCCEEEEeCCC---CHHHHHH----HHH-HHHcCCcEEEEEcCCCHH
Confidence 99999999996 7654332 233 246689999999975543
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.64 E-value=0.00022 Score=75.06 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCcEEEEeCCCC------CCChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 580 TTSRSLVLIDEICR------GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 580 a~~psLlLLDEP~s------GLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
..+|++||+| |.+ ..|+.....+...+.+...+.|+++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999 665 468877777764444444566999999999754
No 456
>PRK09183 transposase/IS protein; Provisional
Probab=97.57 E-value=0.0003 Score=75.42 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=57.4
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHh-CC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TT 581 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~-a~ 581 (803)
|+.++|+||+|+|||+|+..|+..... .|..|- ++. ...++..+.... .. ..+...+.. ..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~----~~~-~~~l~~~l~~a~--~~---------~~~~~~~~~~~~ 163 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR----FTT-AADLLLQLSTAQ--RQ---------GRYKTTLQRGVM 163 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE----EEe-HHHHHHHHHHHH--HC---------CcHHHHHHHHhc
Confidence 688999999999999999999665332 232110 111 111221111000 00 011122222 46
Q ss_pred CCcEEEEeCCCCC-CChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 582 SRSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 582 ~psLlLLDEP~sG-LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
.++++++||.+.. .+... ..++..++....+.+ .+|++|+..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~-~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEE-ANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CCCEEEEcccccCCCChHH-HHHHHHHHHHHHhcC-cEEEecCCC
Confidence 7899999999864 55543 334447777666555 467777763
No 457
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.56 E-value=4.8e-05 Score=71.06 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=26.8
Q ss_pred ceeccccCC----CceEEEEecCCCChhHHHHHHH
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSIC 524 (803)
Q Consensus 494 ~~VlndIsL----Geii~ItGPNGsGKSTLLR~Ia 524 (803)
..++++++| |++++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356777777 6899999999999999999975
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.46 E-value=0.00018 Score=82.15 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=74.4
Q ss_pred Cceecccc-CC--CceEEEEecCCCChhHHHHHHHhhHhhhhccc--cccccccccchh-HHHhhhCCCCCC-ccCCccc
Q 003687 493 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIPYF-DAIMLHMKSYDS-PADGKSS 565 (803)
Q Consensus 493 ~~~VlndI-sL--Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~--~Vpa~~a~i~~~-d~I~~~ig~~d~-l~~~~st 565 (803)
+..+++.+ .+ |+.++|+|+||+|||||+++|++..... .+. .+......+..+ ...+..-+.... +....+.
T Consensus 143 GiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 143 GIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred CCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCC
Confidence 34455553 12 7999999999999999999999875221 111 111121112111 112211111111 1122233
Q ss_pred hHHHHHHHHHHH--------HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCc
Q 003687 566 FQVEMSEIRSIV--------TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 631 (803)
Q Consensus 566 fs~em~~l~~iL--------a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~ 631 (803)
.+..++...... +.-.++-|+++|++|+..|+. .++. ..+...-..|-+..+.||...+.+.+
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCeeeeeeccchhHHHHh
Confidence 444444433222 224788999999999999995 4443 34444443477788888866665543
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.44 E-value=0.00025 Score=71.92 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=23.3
Q ss_pred CceEEEEecCCCChhHHHHHHHhhH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
|+.++|+|||||||||+++.+++++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6889999999999999999999875
No 460
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00066 Score=77.51 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=52.3
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh---hccccccccccccchhHHHh---hhCCCCCCccCCccchHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la---q~G~~Vpa~~a~i~~~d~I~---~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
|++++++||||+||||+++.|++...+. ..+..+......+..++++. ..++..-.... ...++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~-------~~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK-------DIADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC-------CHHHHHHH
Confidence 7899999999999999999999864332 22334444444444443322 22332211111 11223445
Q ss_pred HHhCCCCcEEEEeCCCCCCChHH
Q 003687 577 VTATTSRSLVLIDEICRGTETAK 599 (803)
Q Consensus 577 La~a~~psLlLLDEP~sGLD~~~ 599 (803)
+..+.+.+++|+|.+ |....+
T Consensus 264 l~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 264 LHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHhcCCCEEEecCC--CCCcch
Confidence 556788899999975 555543
No 461
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00052 Score=64.03 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=55.7
Q ss_pred EEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHh---CCC
Q 003687 506 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA---TTS 582 (803)
Q Consensus 506 i~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~---a~~ 582 (803)
++|+||.|+||||+.+.++... +..+ ..+.. ..+.. . ........+..++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~----~~i~~-~~~~~---------~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPF----IEIDG-SELIS---------S---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEE----EEEET-THHHT---------S---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccc----ccccc-ccccc---------c---ccccccccccccccccccccc
Confidence 5799999999999999998753 1100 00000 00110 0 111122233333332 224
Q ss_pred CcEEEEeCCCCCCChH------HHHHHHHHHHHHHHhc-----CCEEEEEccChhhh
Q 003687 583 RSLVLIDEICRGTETA------KGTCIAGSIIETLDNI-----GCLGIVSTHLHGIF 628 (803)
Q Consensus 583 psLlLLDEP~sGLD~~------~g~~L~~~ILe~L~~~-----g~tvI~sTH~~eL~ 628 (803)
|.++++||.-.-.... ....+...++..+.+. +..+|++|++.+..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 8999999985544332 3344555666666432 36888899886543
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.41 E-value=0.00012 Score=74.64 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEEecCCCChhHHHHHHHhhH
Q 003687 505 LFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 505 ii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
+++|+||||||||||.+.|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 463
>PRK06893 DNA replication initiation factor; Validated
Probab=97.36 E-value=0.00076 Score=70.83 Aligned_cols=94 Identities=17% Similarity=0.279 Sum_probs=57.5
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhh-ccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq-~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~ 582 (803)
..+.|.||.|+|||+|++.++.-..... ...|++.. . . ..+. ..++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-------~-~--------------~~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-------K-S--------------QYFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-------H-h--------------hhhh------HHHHhhccc
Confidence 4579999999999999999986532211 11111111 0 0 0000 123344567
Q ss_pred CcEEEEeCCCCCC-ChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 583 RSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 583 psLlLLDEP~sGL-D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
.++|++||+.... +......+ ..+++...+.|.++|++|++..
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCcEEEEeCCCC
Confidence 8999999998865 34333344 4777777777777777666553
No 464
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.0004 Score=87.96 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=53.5
Q ss_pred CCccchHHHHHHH-HHHHHhC----------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhh
Q 003687 561 DGKSSFQVEMSEI-RSIVTAT----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 629 (803)
Q Consensus 561 ~~~stfs~em~~l-~~iLa~a----------~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~ 629 (803)
....++|.++... +.+++.+ .+|+++||||||+|||+.....+. .+++.+.+.|.+|+|+||+.++..
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~l~~~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAI-GILDAIREGSKMIGIISHVPEFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHH
Confidence 3456788887663 3333332 279999999999999998877776 777778778999999999999876
Q ss_pred Cc
Q 003687 630 LP 631 (803)
Q Consensus 630 ~~ 631 (803)
..
T Consensus 1025 ~~ 1026 (1042)
T TIGR00618 1025 RI 1026 (1042)
T ss_pred hh
Confidence 43
No 465
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.31 E-value=0.0002 Score=60.48 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=22.0
Q ss_pred CceEEEEecCCCChhHHHHHHHhhH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
|.++.|+|||||||||+|..|.-++
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997654
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.30 E-value=0.0025 Score=66.30 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=64.8
Q ss_pred cCCCceEEEEecCCCChhHHHHHHHhhH-hhhhccccccccccc---------cch-hHHHhh--hCCCCCCccC-----
Q 003687 500 VDMQSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPAESAS---------IPY-FDAIML--HMKSYDSPAD----- 561 (803)
Q Consensus 500 IsLGeii~ItGPNGsGKSTLLR~Iagl~-~laq~G~~Vpa~~a~---------i~~-~d~I~~--~ig~~d~l~~----- 561 (803)
+.-|++++|.||+|+|||||...++.-. .....+.|+..+... +.. +..... ++...|....
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~ 96 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKEDE 96 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEccccccccc
Confidence 3347899999999999999998875322 112223333322110 000 111110 1111111100
Q ss_pred -CccchHH-H-HHHHHHHHHhC-CCCcEEEEeCCCCCC--ChHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 562 -GKSSFQV-E-MSEIRSIVTAT-TSRSLVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 562 -~~stfs~-e-m~~l~~iLa~a-~~psLlLLDEP~sGL--D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
....+.. + ..++..++... .+++++++|-++.-+ ++.....+...+...+++.|+|+|+++|...
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 97 WSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred cccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 0001111 1 12233333333 257788888876542 3333345555677777888999999999643
No 467
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0013 Score=74.21 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=50.1
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh---ccccccccccccchhHHHh---hhCCCCCCccCCccchHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~---~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
|++++++||||+||||++..|+......+ ...++..+...+.-.+++- ..+++.-...... ..+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~-------~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG-------GDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCc-------ccHHHH
Confidence 68999999999999999999988654321 2233444333333333221 2233211111111 123345
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 003687 577 VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 577 La~a~~psLlLLDEP~sG 594 (803)
+....+.++||+|+++..
T Consensus 210 l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHhcCCCEEEEcCCCCC
Confidence 556778899999999866
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.0016 Score=75.67 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh---ccccccccccccchhHHHh---hhCCCCCCccCCccchHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~---~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
|.+++++||||+||||++..|++.....+ ....++++...+...+++- ..++..-.... .-.+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~-------~~~Dl~~a 328 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVK-------DAADLRLA 328 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccC-------CchhHHHH
Confidence 57899999999999999999998764432 2234555554444333322 12222110000 01112223
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 003687 577 VTATTSRSLVLIDEICRG 594 (803)
Q Consensus 577 La~a~~psLlLLDEP~sG 594 (803)
+..+.+.+++++|.++.+
T Consensus 329 L~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 329 LSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHhccCCCeEEeCCCCcC
Confidence 445667789999997655
No 469
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.25 E-value=0.0018 Score=72.99 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHhhHhhh-hccccccccccccchhHHHhhhCCCC-CCccCCccchHHHHHHHHHHHHh
Q 003687 502 MQSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 502 LGeii~ItGPNGsGKSTLLR~Iagl~~la-q~G~~Vpa~~a~i~~~d~I~~~ig~~-d~l~~~~stfs~em~~l~~iLa~ 579 (803)
-|+++.|.|++|+|||||+.+++...... ....|+..+.. ..++..-..+++.. +++..... ..+.++...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e---~~le~I~~~i~- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAE---TNLEDILASIE- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEcc---CcHHHHHHHHH-
Confidence 37899999999999999999998654322 22334443321 12222222344432 22211111 12333433333
Q ss_pred CCCCcEEEEeCCCC----CCC-----hHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 580 TTSRSLVLIDEICR----GTE-----TAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 580 a~~psLlLLDEP~s----GLD-----~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
..+|++|++|+... .+| ...-..++..+.+..++.+.++|++.|-..
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk 211 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTK 211 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccC
Confidence 36899999999743 222 122233444566667788999999988543
No 470
>PRK03918 chromosome segregation protein; Provisional
Probab=97.22 E-value=0.00066 Score=84.24 Aligned_cols=70 Identities=10% Similarity=-0.039 Sum_probs=51.4
Q ss_pred ccchHHHHHHHHH-----HH--HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhCccc
Q 003687 563 KSSFQVEMSEIRS-----IV--TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 633 (803)
Q Consensus 563 ~stfs~em~~l~~-----iL--a~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~~~~ 633 (803)
..+++.++++... ++ ..+.+|+++|+||||+|+|+.....+. .++..+...+.++|++||+.++...++.
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~-~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLV-DIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 3456777665321 12 236889999999999999999888886 5556666567899999999987665443
No 471
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0012 Score=75.08 Aligned_cols=102 Identities=18% Similarity=0.320 Sum_probs=57.2
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHH-HHHHHHHH--HhC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE-MSEIRSIV--TAT 580 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~e-m~~l~~iL--a~a 580 (803)
.-+.|.||+|+||||+.|.++...... ++ .+.. ..+... +..+ ...+..++ +..
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~----fi-----~i~~-s~l~~k-------------~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTAT----FI-----RVVG-SEFVQK-------------YLGEGPRMVRDVFRLARE 236 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCC----EE-----EEeh-HHHHHH-------------hcchhHHHHHHHHHHHHh
Confidence 458899999999999999998743100 00 0000 001100 0001 11222222 335
Q ss_pred CCCcEEEEeCC----------CCCCChHHHHHHHHHHHHHHHh----cCCEEEEEccChhhhh
Q 003687 581 TSRSLVLIDEI----------CRGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFS 629 (803)
Q Consensus 581 ~~psLlLLDEP----------~sGLD~~~g~~L~~~ILe~L~~----~g~tvI~sTH~~eL~~ 629 (803)
..|.+|++||. .+|.|......+ ..++..+.. .+..+|++||..+..+
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l-~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRIL-LELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHH-HHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 78999999994 344454433333 356665532 3677999999887654
No 472
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.21 E-value=0.002 Score=67.05 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=65.0
Q ss_pred cCCCceEEEEecCCCChhHHHHHHHhhHhhh-------hccccccccccc-cchhHHHhhhCCC-----CCCccCCc-c-
Q 003687 500 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESAS-IPYFDAIMLHMKS-----YDSPADGK-S- 564 (803)
Q Consensus 500 IsLGeii~ItGPNGsGKSTLLR~Iagl~~la-------q~G~~Vpa~~a~-i~~~d~I~~~ig~-----~d~l~~~~-s- 564 (803)
+.-|+++.|+||+|+|||||+.+++...... ....|+..+... ...+.++...++. .+++.... .
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 4458999999999999999999998654322 222334333211 1111222222221 11111100 0
Q ss_pred --chHHHHHHHHHHHHhCCCCcEEEEeCCCCCC----C----hHHHHHHHHHHHHHH----HhcCCEEEEEccCh
Q 003687 565 --SFQVEMSEIRSIVTATTSRSLVLIDEICRGT----E----TAKGTCIAGSIIETL----DNIGCLGIVSTHLH 625 (803)
Q Consensus 565 --tfs~em~~l~~iLa~a~~psLlLLDEP~sGL----D----~~~g~~L~~~ILe~L----~~~g~tvI~sTH~~ 625 (803)
.+..-+.++...+....++++|++|-.++=. + ..++...+..++..| .+.++++|+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1111122333344433489999999997521 1 123333333434433 46799999998754
No 473
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0043 Score=70.28 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=46.8
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhh-hccccccccccccchhHHHhh---hCCCCCCccCCccchHHHHHHHHHHHHh
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIML---HMKSYDSPADGKSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~la-q~G~~Vpa~~a~i~~~d~I~~---~ig~~d~l~~~~stfs~em~~l~~iLa~ 579 (803)
.+++|+||||+||||++..|++..... ....++.++...+...+++-. .++..-... . .-..+...+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~----~---d~~~L~~aL~~ 314 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV----R---DEAAMTRALTY 314 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec----C---CHHHHHHHHHH
Confidence 578999999999999999998754311 111233443333333333222 222110000 0 11223334433
Q ss_pred C---CCCcEEEEeCCCCCCCh
Q 003687 580 T---TSRSLVLIDEICRGTET 597 (803)
Q Consensus 580 a---~~psLlLLDEP~sGLD~ 597 (803)
+ .+.++||+|-+++.-..
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHhccCCCEEEEeCccccCcC
Confidence 2 35799999988886543
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.18 E-value=0.0019 Score=74.69 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=67.1
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh-hccccccccccccchhHHHhhhCCCCC-CccCCccchHHHHHHHHHHHHhC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTAT 580 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la-q~G~~Vpa~~a~i~~~d~I~~~ig~~d-~l~~~~stfs~em~~l~~iLa~a 580 (803)
|+++.|.|++|+|||||+.+++...... ....|+..+.. ..+...-..+++... ++... .. ..+.++...+. .
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~-~e--~~~~~I~~~i~-~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVL-SE--TNWEQICANIE-E 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEc-CC--CCHHHHHHHHH-h
Confidence 7899999999999999999997654221 22334443322 112111122333211 11110 00 12333443333 3
Q ss_pred CCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHhcCCEEEEEccChh
Q 003687 581 TSRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHLHG 626 (803)
Q Consensus 581 ~~psLlLLDEP~sGLD---------~~~g~~L~~~ILe~L~~~g~tvI~sTH~~e 626 (803)
.+|+++++|....=.. ......++..+.+..++.|.|+|+++|...
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 5799999998864221 122334444566666888999999999654
No 475
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.0017 Score=69.96 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=60.1
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhh--hccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~la--q~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~ 581 (803)
..+.|+||.|+|||.|+.+|+.-+.-. ....|++. ..++..+.. .| ......+....
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~--------~~l~~~l~~---------~~----~~~~~~~~~~~ 176 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF--------VEGFGDLKD---------DF----DLLEAKLNRMK 176 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH--------HHHHHHHHH---------HH----HHHHHHHHHhc
Confidence 457999999999999999998754321 11222221 112221100 11 12223455567
Q ss_pred CCcEEEEeCCCC---CC---ChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 582 SRSLVLIDEICR---GT---ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 582 ~psLlLLDEP~s---GL---D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+.+|||||+... |. +......+ ..+++.....+..+|++|+..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~l-f~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQM-YSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHH-HHHHHHHHHCCCCEEEECCCC
Confidence 899999999954 43 22223344 477777766677788888864
No 476
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0029 Score=73.98 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=50.5
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh---ccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHh
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA 579 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~ 579 (803)
|++++|+||+|+||||++..|+....... ...++......+.-.+++... +..-.+.... ......+..++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y-a~iLgv~v~~---a~d~~~L~~aL~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY-GRQLGIAVHE---ADSAESLLDLLER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh-hcccCceeEe---cCcHHHHHHHHHH
Confidence 78999999999999999999987654322 223344433333322222211 1000000000 0112345556666
Q ss_pred CCCCcEEEEeCCCCC
Q 003687 580 TTSRSLVLIDEICRG 594 (803)
Q Consensus 580 a~~psLlLLDEP~sG 594 (803)
..+.++||+|.|+.+
T Consensus 426 l~~~DLVLIDTaG~s 440 (559)
T PRK12727 426 LRDYKLVLIDTAGMG 440 (559)
T ss_pred hccCCEEEecCCCcc
Confidence 778999999999875
No 477
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0035 Score=64.90 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=25.3
Q ss_pred ccCCCceEEEEecCCCChhHHHHHHHhhHh
Q 003687 499 TVDMQSLFLLTGPNGGGKSSLLRSICAASL 528 (803)
Q Consensus 499 dIsLGeii~ItGPNGsGKSTLLR~Iagl~~ 528 (803)
.+.-|+++.|.||+|+||||++.+++....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 344478999999999999999999987654
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0016 Score=79.06 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=54.2
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh---ccccccccccccchhHHHh---hhCCCCCCccCCccchHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~---~~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
|++++++||||+||||++..|++.....+ ....+..+...+...+++. ..+++.-.... .-..+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-------DAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-------CHHHHHHH
Confidence 68999999999999999999998764322 2234455444443333322 23332111111 22345566
Q ss_pred HHhCCCCcEEEEeCCCCC-CChH
Q 003687 577 VTATTSRSLVLIDEICRG-TETA 598 (803)
Q Consensus 577 La~a~~psLlLLDEP~sG-LD~~ 598 (803)
+..+.+.++||+|=+++. .|..
T Consensus 258 l~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 258 LAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred HHHhcCCCEEEEeCCCCCccCHH
Confidence 666778899999988755 3443
No 479
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.11 E-value=0.00096 Score=78.57 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=49.3
Q ss_pred ccchHHHHHH-HHHHHHhC----------CCCcEEEEeCCC-CCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 563 KSSFQVEMSE-IRSIVTAT----------TSRSLVLIDEIC-RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 563 ~stfs~em~~-l~~iLa~a----------~~psLlLLDEP~-sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
...++.++++ +..+++.+ .+|+++|||||+ +++|+.....+. .++..+ .|.++|++||+.++...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~-~~l~~~--~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALL-SILDSL--KDTNVFVISHKDHDPQK 542 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHH-HHHHhC--CCCeEEEEECchhchhh
Confidence 4566777665 33333222 589999999998 789999888876 566666 47899999999877665
Q ss_pred ccc
Q 003687 631 PLK 633 (803)
Q Consensus 631 ~~~ 633 (803)
+++
T Consensus 543 ~d~ 545 (562)
T PHA02562 543 FDR 545 (562)
T ss_pred hhc
Confidence 443
No 480
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.11 E-value=0.0025 Score=73.67 Aligned_cols=120 Identities=20% Similarity=0.153 Sum_probs=68.6
Q ss_pred CCCceEEEEecCCCChhHHHHHHHhhHhh-hhccccccccccccchhHHHhhhCCCC-CCccCCccchHHHHHHHHHHHH
Q 003687 501 DMQSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSIVT 578 (803)
Q Consensus 501 sLGeii~ItGPNGsGKSTLLR~Iagl~~l-aq~G~~Vpa~~a~i~~~d~I~~~ig~~-d~l~~~~stfs~em~~l~~iLa 578 (803)
.-|+++.|.|+.|+|||||+.+++..... .....|+..+.. ..++..-..+++.. +++..... ..+.++...+.
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~~~~~l~~~~e---~~l~~i~~~i~ 153 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGLPSDNLYLLAE---TNLEAILATIE 153 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCCChhcEEEeCC---CCHHHHHHHHH
Confidence 33789999999999999999999875432 223345544332 11221223344431 11111000 12233333332
Q ss_pred hCCCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 579 ATTSRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGLD---------~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
..+|++|++|+..+-.. ...-..++..+.+..++.|+++|+++|-.
T Consensus 154 -~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvt 208 (446)
T PRK11823 154 -EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVT 208 (446)
T ss_pred -hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 35899999999864322 12223444456666788899999999953
No 481
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=0.0017 Score=69.30 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=65.5
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~p 583 (803)
..++|.||.|+|||.|+..|+..+. +.|..| .++ ....++..+... +... .....++..+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v----~~i-~~~~l~~~l~~~---------~~~~-~~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV----IVV-TVPDVMSRLHES---------YDNG-QSGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCe----EEE-EHHHHHHHHHHH---------Hhcc-chHHHHHHHhcCC
Confidence 4689999999999999999987553 223222 111 112222222110 0000 0122456667899
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+||+|||.+.--.......++..+++.-.+.+..+|++|...
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999998765555566666788888777667788887753
No 482
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.00095 Score=71.12 Aligned_cols=106 Identities=26% Similarity=0.340 Sum_probs=64.6
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~p 583 (803)
..+.|.|+.|+|||+|+..|+-.+.. .|..| ..+ ....++..+.. +|...-.....++..+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~i-t~~~l~~~l~~---------~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LII-TVADIMSAMKD---------TFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEE-EHHHHHHHHHH---------HHhhccccHHHHHHHhccC
Confidence 36899999999999999999765432 22211 111 12222222211 0100000122344456789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 584 sLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+||++||++.--+......++..|+++-.+.+..+|++|...
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 999999999877666666677788888666567778877753
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.09 E-value=0.0031 Score=66.87 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.2
Q ss_pred ceEEEEecCCCChhHHHHHHHhhH
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
.+++|+||||+||||+++.+....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 489999999999999999997653
No 484
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0096 Score=64.45 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=50.9
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhh-hhccccccccccccchhHHHhh---hCCCCCCccCCccchHHHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIML---HMKSYDSPADGKSSFQVEMSEIRSIVT 578 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~l-aq~G~~Vpa~~a~i~~~d~I~~---~ig~~d~l~~~~stfs~em~~l~~iLa 578 (803)
++.++++||||+||||+++.+++.... .....++......+....++-. .++..-... .-...+.+...-++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~----~~~~~l~~~l~~l~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV----RDEAAMTRALTYFK 150 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec----CCHHHHHHHHHHHH
Confidence 479999999999999999999886532 1122233333322333333222 222110000 00112222212223
Q ss_pred hCCCCcEEEEeCCCCCC-ChHHHHHH
Q 003687 579 ATTSRSLVLIDEICRGT-ETAKGTCI 603 (803)
Q Consensus 579 ~a~~psLlLLDEP~sGL-D~~~g~~L 603 (803)
...+.+++|+|-|++.- |...-.++
T Consensus 151 ~~~~~D~ViIDt~Gr~~~~~~~l~el 176 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEM 176 (270)
T ss_pred hcCCCCEEEEECCCCCcCCHHHHHHH
Confidence 34568999999999974 44433333
No 485
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.0012 Score=61.94 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=55.2
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhh------ccccc--cccccccchhHHHhhhCCCCCCccCCccchHHHH-HHHH
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGI------CGLMV--PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM-SEIR 574 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq------~G~~V--pa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em-~~l~ 574 (803)
.++.|+||.|+||||+++.+..-..... .-.++ +.....-.....+...++..... .....++ ..+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~~~ 80 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSLLI 80 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHHHH
Confidence 5789999999999999999987653211 11112 11111112233444444433222 1112222 3344
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhcCCEEEEEccC
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 624 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L-~~~g~tvI~sTH~ 624 (803)
..+..... .+|++||.-. +. . ...+..+ ..+ .+.+..+|++.+.
T Consensus 81 ~~l~~~~~-~~lviDe~~~-l~--~-~~~l~~l-~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRV-VLLVIDEADH-LF--S-DEFLEFL-RSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTE-EEEEEETTHH-HH--T-HHHHHHH-HHHTCSCBEEEEEEESS
T ss_pred HHHHhcCC-eEEEEeChHh-cC--C-HHHHHHH-HHHHhCCCCeEEEEECh
Confidence 44443322 7999999866 52 1 3333233 333 3456677777665
No 486
>PRK08727 hypothetical protein; Validated
Probab=97.06 E-value=0.0026 Score=67.06 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=58.9
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCCC
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 583 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~p 583 (803)
..+.|.||.|+|||.|+..++.-.. +.|. ...+++. .. +. ..+..++....+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~--~~~~----~~~y~~~-~~-----------------~~---~~~~~~~~~l~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE--QAGR----SSAYLPL-QA-----------------AA---GRLRDALEALEGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCC----cEEEEeH-HH-----------------hh---hhHHHHHHHHhcC
Confidence 4589999999999999999876432 1121 0011111 11 00 1122344556778
Q ss_pred cEEEEeCCCCCC-ChHHHHHHHHHHHHHHHhcCCEEEEEccC
Q 003687 584 SLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHL 624 (803)
Q Consensus 584 sLlLLDEP~sGL-D~~~g~~L~~~ILe~L~~~g~tvI~sTH~ 624 (803)
++|++||...-. ++.....+. .+++...+.+..+|++++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf-~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALF-DFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEeCcccccCChHHHHHHH-HHHHHHHHcCCeEEEECCC
Confidence 999999987654 334444554 6777777778889999986
No 487
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0022 Score=68.67 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=58.7
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCCC
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 582 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~~ 582 (803)
++-++|+||.|+|||+|+..|+.-.. +.|..| .+.....++..+.... ... .+...+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v-----~f~t~~~l~~~l~~~~----~~~-------~~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV-----LFATAAQWVARLAAAH----HAG-------RLQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCCch-----hhhhHHHHHHHHHHHH----hcC-------cHHHHHHHhcc
Confidence 46789999999999999999975432 223221 1111222332221110 000 12223344567
Q ss_pred CcEEEEeCCCCC-CChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 583 RSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 583 psLlLLDEP~sG-LD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+++||+||++.- .+.... .++..++....+.+ .+|++|+..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~-~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAA-NLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHH-HHHHHHHHHHHhcC-CEEEEcCCC
Confidence 899999999864 455443 44446766655544 577777764
No 488
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.03 E-value=0.0012 Score=83.66 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCccchHHHHHHH-HHHHHhC--------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 561 DGKSSFQVEMSEI-RSIVTAT--------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 561 ~~~stfs~em~~l-~~iLa~a--------~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
....++|.++..+ +.+++.+ .+|+++|+||||+|||+.....+. .+++.+.+.|.+|+|+||..++.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEecHHHHHHh
Confidence 3456778777663 3334433 379999999999999998877775 7888888889999999998877653
No 489
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.02 E-value=0.00086 Score=71.67 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCCCCCCChHHHHH-HHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 580 TTSRSLVLIDEICRGTETAKGTC-IAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 580 a~~psLlLLDEP~sGLD~~~g~~-L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
..++++.+| +|+.+|+.+-.. + +++.++..+.+.|+.||.+.....
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCC
Confidence 368999999 999999644332 3 256676677899999997765543
No 490
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0019 Score=83.65 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=51.9
Q ss_pred CccchHHHHHH-------HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH----hcCCEEEEEccChhhhhC
Q 003687 562 GKSSFQVEMSE-------IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD----NIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 562 ~~stfs~em~~-------l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~----~~g~tvI~sTH~~eL~~~ 630 (803)
....++.++++ ++.+.+.+.+|.++||||||+|||+.....+...+.+.+. ..|.++|++||+.+++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 33567888776 3334455799999999999999999988888755544432 247899999999987653
No 491
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0085 Score=68.02 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=50.0
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhhh--ccc---cccccccccchhHH---HhhhCCCCCCccCCccchHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLGI--CGL---MVPAESASIPYFDA---IMLHMKSYDSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~laq--~G~---~Vpa~~a~i~~~d~---I~~~ig~~d~l~~~~stfs~em~~l~ 574 (803)
+.+++++||||+||||.+.-++....... .|. .+..+.....-..+ +-..+++. +.. .. ....+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~-~~----~~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKA-IE----SFKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEe-eC----cHHHHH
Confidence 46899999999999999998886554321 122 23333222222222 22223331 110 01 123355
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 003687 575 SIVTATTSRSLVLIDEICRGT 595 (803)
Q Consensus 575 ~iLa~a~~psLlLLDEP~sGL 595 (803)
..+....+.++||+|++++..
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 556667889999999999875
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.01 E-value=0.00043 Score=70.14 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.8
Q ss_pred CceEEEEecCCCChhHHHHHHHhhH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
|++++|+|||||||||++|+|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 6789999999999999999998764
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.01 E-value=0.0038 Score=66.59 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.5
Q ss_pred cccCCCceEEEEecCCCChhHHHHHHHhhH
Q 003687 498 NTVDMQSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 498 ndIsLGeii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
..+.-|++++|.||+|+|||||+.+++...
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334447899999999999999999987654
No 494
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.0014 Score=72.54 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=63.2
Q ss_pred ceEEEEecCCCChhHHHHHHHhhHhhhhc-cccccccc---------cccchhHHHhhhCCCCCCccCCccchHHHHHHH
Q 003687 504 SLFLLTGPNGGGKSSLLRSICAASLLGIC-GLMVPAES---------ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEI 573 (803)
Q Consensus 504 eii~ItGPNGsGKSTLLR~Iagl~~laq~-G~~Vpa~~---------a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l 573 (803)
.-+++.||.|.||||+.+.++..+.-... ....|+.. ..-|.+..+.. -+..+ ..+...-...+.++
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p-~~~~~--~~g~~~~~I~id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITP-LSDEP--ENGRKLLQIKIDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEec-ccccc--cccccCCCcCHHHH
Confidence 45789999999999999999887532110 00011110 00011100000 00000 01110011123333
Q ss_pred HHHHHh------CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhh
Q 003687 574 RSIVTA------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 627 (803)
Q Consensus 574 ~~iLa~------a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL 627 (803)
..+... ....+ |++|||+.++|+.....+. .+++... .++++|++||+.+.
T Consensus 99 R~l~~~~~~~p~~~~~k-V~iiEp~~~Ld~~a~naLL-k~LEep~-~~~~~Ilvth~~~~ 155 (325)
T PRK08699 99 REIIDNVYLTSVRGGLR-VILIHPAESMNLQAANSLL-KVLEEPP-PQVVFLLVSHAADK 155 (325)
T ss_pred HHHHHHHhhCcccCCce-EEEEechhhCCHHHHHHHH-HHHHhCc-CCCEEEEEeCChHh
Confidence 333332 12334 5568999999999877776 5666654 46889999999874
No 495
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.0019 Score=74.49 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=59.9
Q ss_pred eEEEEecCCCChhHHHHHHHhhHhhhh---ccccccccccccchhHHHhhhCCCCCCccCCccchHHHHHHHHHHHHhCC
Q 003687 505 LFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 581 (803)
Q Consensus 505 ii~ItGPNGsGKSTLLR~Iagl~~laq---~G~~Vpa~~a~i~~~d~I~~~ig~~d~l~~~~stfs~em~~l~~iLa~a~ 581 (803)
-+.|.||.|+|||.|++.++.-+.-.. ...|++++. ....+...+... .+.++.... ..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~----f~~~~~~~~~~~------------~~~~f~~~~--~~ 193 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKEG------------KLNEFREKY--RK 193 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH----HHHHHHHHHhcc------------cHHHHHHHH--Hh
Confidence 378999999999999999986543221 112332211 011111111100 011111111 13
Q ss_pred CCcEEEEeCCCCCCChHHH-HHHHHHHHHHHHhcCCEEEEEc-cChhh
Q 003687 582 SRSLVLIDEICRGTETAKG-TCIAGSIIETLDNIGCLGIVST-HLHGI 627 (803)
Q Consensus 582 ~psLlLLDEP~sGLD~~~g-~~L~~~ILe~L~~~g~tvI~sT-H~~eL 627 (803)
++++||+||+....+.... ..+. .++..+.+.|..+|++| |....
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf-~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHH-HHHHHHHHcCCeEEEECCCCHHH
Confidence 6899999999988776533 3454 67777877777788876 55543
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.97 E-value=0.0042 Score=64.58 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=62.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHhhH-hhhhccccccccccccchhHHHhhhCCCC-----CC-cc---CCccchHHHHH
Q 003687 502 MQSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPAESASIPYFDAIMLHMKSY-----DS-PA---DGKSSFQVEMS 571 (803)
Q Consensus 502 LGeii~ItGPNGsGKSTLLR~Iagl~-~laq~G~~Vpa~~a~i~~~d~I~~~ig~~-----d~-l~---~~~stfs~em~ 571 (803)
-|+++.|.|+.|+|||++.-.++--. .....+.|+..+... ..+-.-+..++.. +. +. .....+...+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE-ERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTSLN 93 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhhHH
Confidence 37899999999999999987775322 112233444333211 1111111112210 00 00 00011111122
Q ss_pred H----HHHHHHhCCCCcEEEEeCCCCCC-----ChHHHHHHHHHHHHHHHhcCCEEEEEccCh
Q 003687 572 E----IRSIVTATTSRSLVLIDEICRGT-----ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 625 (803)
Q Consensus 572 ~----l~~iLa~a~~psLlLLDEP~sGL-----D~~~g~~L~~~ILe~L~~~g~tvI~sTH~~ 625 (803)
+ +..++. -.+++++++| +.+.+ |..........+++.+++.|.|+++++|..
T Consensus 94 ~l~~~~~~~i~-~~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~ 154 (224)
T TIGR03880 94 RIKNELPILIK-ELGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD 154 (224)
T ss_pred HHHHHHHHHHH-HhCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 2 222222 2457899999 43333 333344444588888888999999999964
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.95 E-value=0.0018 Score=70.26 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=48.3
Q ss_pred CceEEEEecCCCChhHHHHHHHhhHhhh---hccccccccccccchhHHHh--h-hCCCCCCccCCccchHHHHHHHHHH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPYFDAIM--L-HMKSYDSPADGKSSFQVEMSEIRSI 576 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~~la---q~G~~Vpa~~a~i~~~d~I~--~-~ig~~d~l~~~~stfs~em~~l~~i 576 (803)
+.+++|+||||+||||++..++...... ....++..+........++. . .++..-.. .. .-..+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~----~~---~~~~l~~~ 266 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV----AR---DPKELRKA 266 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec----cC---CHHHHHHH
Confidence 5789999999999999999998765432 23334554433322222221 1 12211000 01 11235556
Q ss_pred HHhCCCCcEEEEeCCC
Q 003687 577 VTATTSRSLVLIDEIC 592 (803)
Q Consensus 577 La~a~~psLlLLDEP~ 592 (803)
+..+.+.++||+|.||
T Consensus 267 l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 267 LDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHccCCCEEEEeCCC
Confidence 6666778999999885
No 498
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.95 E-value=0.0015 Score=73.99 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=39.0
Q ss_pred ceEEEecccccccccCCCceecc-----------ccCC----CceEEEEecCCCChhHHHHHHHhhH
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHN-----------TVDM----QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 476 ~~i~l~~l~p~~~~~~~~~~Vln-----------dIsL----Geii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
..+.++++++.|. +++.++. |+.+ |+.++|+||.|+||||+++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP---~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP---NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC---CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 4578899988873 3446664 5555 8999999999999999999988764
No 499
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.0025 Score=66.93 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=61.5
Q ss_pred Cce-EEEEecCCCChhHHHHHHHhhHhhhhccccccccccccchhHHHh------------hhCCCCCCccCCccchHHH
Q 003687 503 QSL-FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM------------LHMKSYDSPADGKSSFQVE 569 (803)
Q Consensus 503 Gei-i~ItGPNGsGKSTLLR~Iagl~~laq~G~~Vpa~~a~i~~~d~I~------------~~ig~~d~l~~~~stfs~e 569 (803)
|.. +.|+||.++||||+||-|+.++.-...+ +.|..-..+..-..|- .++.+.+..-+ ..+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~-~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk-----~~g 209 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQ-FLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK-----AEG 209 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccc-cCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH-----HHH
Confidence 344 8999999999999999999987433221 1221111111111111 11111111100 001
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCEEEEEccChhhhhC
Q 003687 570 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 630 (803)
Q Consensus 570 m~~l~~iLa~a~~psLlLLDEP~sGLD~~~g~~L~~~ILe~L~~~g~tvI~sTH~~eL~~~ 630 (803)
+..++ +...|+++++||.++-.|.. ++++. .+.|..++.+-|=..+.++
T Consensus 210 ---mmmaI-rsm~PEViIvDEIGt~~d~~-------A~~ta-~~~GVkli~TaHG~~iedl 258 (308)
T COG3854 210 ---MMMAI-RSMSPEVIIVDEIGTEEDAL-------AILTA-LHAGVKLITTAHGNGIEDL 258 (308)
T ss_pred ---HHHHH-HhcCCcEEEEeccccHHHHH-------HHHHH-HhcCcEEEEeeccccHHHh
Confidence 11112 25789999999999988864 23333 3569999999997665443
No 500
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.93 E-value=0.00059 Score=69.01 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=23.2
Q ss_pred CceEEEEecCCCChhHHHHHHHhhH
Q 003687 503 QSLFLLTGPNGGGKSSLLRSICAAS 527 (803)
Q Consensus 503 Geii~ItGPNGsGKSTLLR~Iagl~ 527 (803)
|++++|+|||||||||+++.|+++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999999875
Done!