Query 003687
Match_columns 803
No_of_seqs 383 out of 3302
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:18:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003687.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1736-1740//hhsearch_pdb/003687hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 1.0 1 1 421.7 40.6 524 123-694 302-854 (934)
2 1wb9_A DNA mismatch repair pro 1.0 1 1 417.9 37.3 509 124-693 270-798 (800)
3 3thx_B DNA mismatch repair pro 1.0 1 1 409.1 36.6 519 120-694 318-880 (918)
4 1ewq_A DNA mismatch repair pro 1.0 1 1 390.2 41.6 527 92-692 223-763 (765)
5 2o8b_B DNA mismatch repair pro 1.0 1 1 388.0 40.4 305 389-694 661-988 (1022)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 153.6 14.4 164 478-645 5-220 (359)
7 3rlf_A Maltose/maltodextrin im 1.0 1 1 151.0 12.9 163 478-645 4-215 (381)
8 3tui_C Methionine import ATP-b 1.0 1 1 148.4 14.7 167 476-643 23-243 (366)
9 3tif_A Uncharacterized ABC tra 1.0 1 1 147.8 15.5 151 494-645 18-226 (235)
10 2yyz_A Sugar ABC transporter, 1.0 1 1 147.5 14.3 161 478-643 4-213 (359)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=421.68 Aligned_cols=524 Identities=19% Similarity=0.235 Sum_probs=370.5
Q ss_pred CCHHHHHHHCCCCCCC-----CCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHHHC----------C-C
Q ss_conf 7500222203546899-----5310023158999984179998620699935789-99999998830----------4-6
Q 003687 123 LHLGTATQIGAIPTEG-----IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA-STIQAICKLMS----------K-V 185 (803)
Q Consensus 123 l~~~ta~qlg~~~~~~-----ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~~a-~~i~~~~~~~~----------~-~ 185 (803)
|--.|-.+|-+.++.. -.+|+..+ -.-.++.-.|-||.||++|.--.-. ..=+.++..|. . .
T Consensus 302 lD~~t~~nLEl~~~~~~~~~~~~SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~ 380 (934)
T 3thx_A 302 LDIAAVRALNLFQGSVEDTTGSQSLAALL-NKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDL 380 (934)
T ss_dssp ECHHHHHHTTSCC---------CCHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTT
T ss_pred ECHHHHHHCCCCCCCCCCCCCCCCHHHHH-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 57888963612645799987777499986-45778799999999974868899999999999999850958999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC---CHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 789860789999997410236999989999999995506921899999613---53466303588968899999999997
Q 003687 186 TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLM---DPTWVATGLKIDFETLVEECRLASVR 262 (803)
Q Consensus 186 ~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~---~~~~~~~g~~~~~~~l~~~c~~~~~~ 262 (803)
-..+|++..+...+..+.++.-.+..+...+. .-+.+.+.+...- .+...+ +-.+.|. .....+..
T Consensus 381 L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~------~~~~l~~~l~~~~~~~~~~l~~----~~~~~l~-~~~~~l~~ 449 (934)
T 3thx_A 381 LRRFPDLNRLAKKFQRQAANLQDCYRLYQGIN------QLPNVIQALEKHEGKHQKLLLA----VFVTPLT-DLRSDFSK 449 (934)
T ss_dssp GGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHT------THHHHHHHHHHTCCSSSTTGGG----GTHHHHH-HHHHHHHH
T ss_pred HCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHHCCCCCCHHHHH----HHHHHHH-HHHHHHHH
T ss_conf 64787899999999628999999999999999------9999999998553311067898----8888999-88765999
Q ss_pred HHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf 60002256775322468999990378635533113222112238999999999999999963037789987753078999
Q 003687 263 IGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGG 342 (803)
Q Consensus 263 i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~i~~~~~~~~~~~~ 342 (803)
+.++++..++.+....+.+.|.+.|.+.+.+ +.+.+.++......+...+.+++. ..+
T Consensus 450 ~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~----------lr~~~~~~~~~l~~~~~~~~~~~~------------~~~ 507 (934)
T 3thx_A 450 FQEMIETTLDMDQVENHEFLVKPSFDPNLSE----------LREIMNDLEKKMQSTLISAARDLG------------LDP 507 (934)
T ss_dssp HHHHHHTTBCTTGGGTTCCCBCTTSSHHHHH----------HHHHHHHHHHHHHHHHHHHHHHSC------------CCB
T ss_pred HHHHHHHHHCCCHHHCCCCEECCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHC------------CCC
T ss_conf 9999999857231424995138998999999----------999999999999999999999848------------985
Q ss_pred -CCCCCHHCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -9753001002543252056110131268988544476101102788841206620288999999999999999999999
Q 003687 343 -PKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLE 421 (803)
Q Consensus 343 -~~~ei~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~ 421 (803)
..-.+.|... .|+.+.++..... .++. ...+.....+.+.++|+|+++.++.+++..+.+++.+...+
T Consensus 508 ~~~lk~~~~~~------~Gy~i~v~~~~~~----~~~~-~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~ 576 (934)
T 3thx_A 508 GKQIKLDSSAQ------FGYYFRVTCKEEK----VLRN-NKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDA 576 (934)
T ss_dssp TTTBEEEECC--------CEEEEECHHHHT----TTTT-CSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHH
T ss_pred CCEEEEEEECC------CEEEEEEEECHHH----CCCC-CCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65279998164------0289999842654----4578-87818997135739998989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCEEEEECCCCCCCCC-CCCCEECC
Q ss_conf 99999999999999999999999999999520320246--9903008633766774338990446653234-79943101
Q 003687 422 LLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRR--RKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHN 498 (803)
Q Consensus 422 il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~--~~~~~P~i~~~~~~g~~~i~i~~l~p~~~~~-~~~~~V~n 498 (803)
++.++...+..+...+......+...|++.++|..+.. .+||+|++++. +...+.+++.+|+++.. .++++|+|
T Consensus 577 i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~~~~~~v~n 653 (934)
T 3thx_A 577 IVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQDEIAFIPN 653 (934)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC--CCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC---CCCCEEEECCCCCHHHHCCCCEEECC
T ss_conf 999999999999999999999999999999999999856689848700027---87540763675612443378606534
Q ss_pred CCCC----CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2588----966999806999822899999755754101621156656543057895307877882378552278779999
Q 003687 499 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 574 (803)
Q Consensus 499 di~L----g~i~iItGPNgsGKSTlLK~I~~l~llaq~G~~VPAe~a~i~~~d~I~~~ig~~d~i~~~~StF~~el~el~ 574 (803)
|+++ |++++|||||||||||+||+++++.+|+|.|+|+|++.+.++.++.++.+++..|++..+.|+|+.+|.+++
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHH
T ss_pred CCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 53330379718999888998777999999998998762884344233004999999863816538775766679999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEE
Q ss_conf 999958999099990899999968899999999999983-5979999826825540753232322214699974893333
Q 003687 575 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP 653 (803)
Q Consensus 575 ~iL~~at~~sLVLLDEpgsGTD~~dg~aLa~aiLe~L~~-~g~~vIisTH~~eL~~l~~~~~~i~~~~m~~~~~~~~l~~ 653 (803)
.++..+++++|+||||||+|||+.++.++++++++++.+ .++++||+||++++..++++...+.+++|.+....+.+.+
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~ 813 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTM 813 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEEEECCCCEEE
T ss_conf 99984639919999699889999999999999999998567999999927379998732040007669999844882778
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 34775077898169999999399999999999999984323
Q 003687 654 TWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 654 tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
+|++.+|.+++|||+++|+++|+|++||+||++++.++|..
T Consensus 814 ~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~ 854 (934)
T 3thx_A 814 LYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEF 854 (934)
T ss_dssp EEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 88886688898649999998398999999999999999712
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=417.88 Aligned_cols=509 Identities=20% Similarity=0.236 Sum_probs=365.2
Q ss_pred CHHHHHHHCCCCCC---CCCCCHHHCCCCCCCCCHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCC-------CCCCCCHH
Q ss_conf 50022220354689---9531002315899998417999862069993-5789999999988304-------67898607
Q 003687 124 HLGTATQIGAIPTE---GIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-YEIASTIQAICKLMSK-------VTCSIPEF 192 (803)
Q Consensus 124 ~~~ta~qlg~~~~~---~ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~-~~~a~~i~~~~~~~~~-------~~~~~p~~ 192 (803)
--.|-..|.+..+. .-.+|+ +++-.-.++.-.|.+|.||++|-. .+.-..=|.++..+.. .=..+|++
T Consensus 270 d~~t~~~LEl~~~~~~~~~gSL~-~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dl 348 (800)
T 1wb9_A 270 DAATRRNLEITQNLAGGAENTLA-SVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDL 348 (800)
T ss_dssp CHHHHHHTTSSSCTTSCSTTSHH-HHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSH
T ss_pred CHHHHHHCCCCCCCCCCCCCCHH-HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 68999854685247899646599-98688969799999998725889999999999999999999999778875278658
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCHHHHH---HHHHHHHHHHHCHHCC
Q ss_conf 8999999741023699998999999999550692189999961353466303588968899---9999999976000225
Q 003687 193 TCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLV---EECRLASVRIGEMISL 269 (803)
Q Consensus 193 ~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~l~---~~c~~~~~~i~~~v~~ 269 (803)
..+.+.+..+.++-..+..++..+..+. .+...++..-.|.. ..+. ..+....+.|...+..
T Consensus 349 er~l~r~~~~~~~~~dl~~l~~~l~~~~------~l~~~l~~~~~~~L---------~~l~~~l~~~~~l~~~i~~~i~~ 413 (800)
T 1wb9_A 349 ERILARLALRTARPRDLARMRHAFQQLP------ELRAQLETVDSAPV---------QALREKMGEFAELRDLLERAIID 413 (800)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTTHH------HHHHHHHSCCCHHH---------HHHHHHHCCCHHHHHHHHHHBCS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH------HHHHHHHHCCCHHH---------HHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999999729989999999999999999------99999873686899---------99997360289999999998674
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 67753224689999903786355331132221122389999999999999999630377899877530789999753001
Q 003687 270 DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILY 349 (803)
Q Consensus 270 ~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~i~~~~~~~~~~~~~~~ei~~ 349 (803)
|....+.....|.+.+...+ +.+.+....+...+.+ +..+.+.. .+...-.+.|
T Consensus 414 --~~~~~~~~~~~I~~g~~~eL-----------------d~lr~~~~~~~~~l~~----~~~~~~~~---~~~~~l~i~~ 467 (800)
T 1wb9_A 414 --TPPVLVRDGGVIASGYNEEL-----------------DEWRALADGATDYLER----LEVRERER---TGLDTLKVGF 467 (800)
T ss_dssp --SCCSCSTTCCCBCTTSCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHHH---HTCTTCEEEE
T ss_pred --CCHHHHHCCCEECCCCCHHH-----------------HHHHHHHHHHHHHHHH----HHHHHHHH---HCCCCEEEEE
T ss_conf --75445413884678978899-----------------9999999999999999----99999998---3998147876
Q ss_pred CCCCCCEEEECCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00254325205611013126898854447-61011027888412066202889999999999999999999999999999
Q 003687 350 AREHEAVWFKGKKFRPTVWASTPGEEQIK-QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS 428 (803)
Q Consensus 350 ~~~~~~~~~r~~~~~~~~~~~~~~~~~i~-~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~ 428 (803)
.+. ..|.+.+..... .+++ +.++..+.+ +.++|+++++.+..+++.++.+++.....+++.++..
T Consensus 468 ~~~--------~gy~i~V~~~~~--~~vp~~~i~~~s~~----~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~ 533 (800)
T 1wb9_A 468 NAV--------HGYYIQISRGQS--HLAPINYMRRQTLK----NAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFD 533 (800)
T ss_dssp ETT--------TEEEEEEEHHHH--TTSCTTCEEEEECS----SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--------CEEEEEEECCCC--CCCCCCEEEEEECC----CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 473--------139999843200--13885127864026----8878847899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCC-CCCCEECCCCCC---CC
Q ss_conf 99999999999999999999995203202469903008633766774338990446653234-799431012588---96
Q 003687 429 ELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM---QS 504 (803)
Q Consensus 429 ~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~g~~~i~i~~l~p~~~~~-~~~~~V~ndi~L---g~ 504 (803)
.+..+...+......+...|++++++..+...+||+|++++. ..+.+++.+|+.+.. .++++++||+++ |+
T Consensus 534 ~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~ 608 (800)
T 1wb9_A 534 LLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDK-----PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRR 608 (800)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSS-----SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC-----CCEEEEECCCCEEECCCCCCEEEECCCCCCCCC
T ss_conf 998889999999999999999999999998689836477799-----878999541637872479836510231267885
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 69998069998228999997557541016211566565430578953078778823785522787799999999589990
Q 003687 505 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 584 (803)
Q Consensus 505 i~iItGPNgsGKSTlLK~I~~l~llaq~G~~VPAe~a~i~~~d~I~~~ig~~d~i~~~~StF~~el~el~~iL~~at~~s 584 (803)
+++|+|||||||||+||+++++.+++|.|++||++.+.++.++++|++++..|++..+.|+|+.+|.++..++..+++++
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~ps 688 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYS 688 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999987689999999889887518642132045421999876588788887426555688999999998456997
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCC
Q ss_conf 99990899999968899999999999983-59799998268255407532323222146999748933333477507789
Q 003687 585 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 663 (803)
Q Consensus 585 LVLLDEpgsGTD~~dg~aLa~aiLe~L~~-~g~~vIisTH~~eL~~l~~~~~~i~~~~m~~~~~~~~l~~tYkL~~G~~~ 663 (803)
|+|+||||+|||+.++.++++++++++.+ .++++||+||++++..+.++.+.+.+++|.++...+++.|+|++.+|.++
T Consensus 689 LlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~ 768 (800)
T 1wb9_A 689 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAAS 768 (800)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 89997998789866799999999999986239868998378899987443202377899999728917898799878999
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 816999999939999999999999998432
Q 003687 664 ESLAFETAKREGVPETIIQRAEDLYIACGV 693 (803)
Q Consensus 664 ~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~ 693 (803)
+|||+++|+++|+|++||+||++++.++|.
T Consensus 769 ~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 769 KSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp SCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 858999999819899999999999998761
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=409.06 Aligned_cols=519 Identities=18% Similarity=0.221 Sum_probs=356.3
Q ss_pred CCCCCHHHHHHHCCCCCCC----CCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHHH-----------C
Q ss_conf 9777500222203546899----5310023158999984179998620699935789-9999999883-----------0
Q 003687 120 PRPLHLGTATQIGAIPTEG----IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA-STIQAICKLM-----------S 183 (803)
Q Consensus 120 p~pl~~~ta~qlg~~~~~~----ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~~a-~~i~~~~~~~-----------~ 183 (803)
---|--.|-.+|-+..+-. -.+|+..+ -.-.++.-.|-||+||++|---.-. ..=|.++..| .
T Consensus 318 ~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~L-d~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~ 396 (918)
T 3thx_B 318 FMTINGTTLRNLEILQNQTDMKTKGSLLWVL-DHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIE 396 (918)
T ss_dssp BCEECHHHHHHTTSSSCTTTCSSTTSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred EEEECHHHHHHCCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7998789997437763689998887699998-427796899999998758278999999999999999847957899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCC-HHHHHHHHHHH---
Q ss_conf 46789860789999997410236999989999999995506921899999613534663035889-68899999999---
Q 003687 184 KVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKID-FETLVEECRLA--- 259 (803)
Q Consensus 184 ~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~l~~~c~~~--- 259 (803)
..-..+|+++.+...+..+.++--.|..+...+..+.. .+..++.. +....... ...+...+...
T Consensus 397 ~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~-----~l~~~l~~------~~~~~~~~lL~~~~~~~~~~~~~ 465 (918)
T 3thx_B 397 NHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKS-----EFQAIIPA------VNSHIQSDLLRTVILEIPELLSP 465 (918)
T ss_dssp HTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHTCCCHHHHHHHTHHHHHTGG
T ss_pred HHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 98726865778888760376888999999999999999-----99999887------65202578999999755566789
Q ss_pred HHHHHCHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 99760002256775322468-99999037863553311322211223899999999999999996303778998775307
Q 003687 260 SVRIGEMISLDGESDQKICS-YDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTA 338 (803)
Q Consensus 260 ~~~i~~~v~~~~~~~~~~~~-~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~~ai~ed~~~~i~~~~~~~~ 338 (803)
...+.+++... ...... ...+.. ..+ ...+....+....+...+.+ .+.+++..++
T Consensus 466 ~~~~~~~i~~~---~~~~~~~~~~~~~-~~~---------------~~~l~~~~~~~~~~~~~~~~----~l~~~~~~i~ 522 (918)
T 3thx_B 466 VEHYLKILNEQ---AAKVGDKTELFKD-LSD---------------FPLIKKRKDEIQGVIDEIRM----HLQEIRKILK 522 (918)
T ss_dssp GHHHHTTSCHH---HHHHTCSTTSCSC-GGG---------------CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT
T ss_pred HHHHHHHHHHH---HHHCCCCCCCCCC-CCC---------------CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC
T ss_conf 99999998776---6442774200024-322---------------77799999999999999999----9999998747
Q ss_pred CCCCCCCCCHHCCCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999753001002543252056110131268988544476101102788841206620288999999999999999999
Q 003687 339 PLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 418 (803)
Q Consensus 339 ~~~~~~~ei~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~~lv~~~~~~g~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~ 418 (803)
. .+ +.| ...++.+|.+.+..... ..+++..+..+..+ +.++|+++++.+..+++..+.++....
T Consensus 523 ~---~~--~~~------~~~~g~~y~iev~~~~~--~~vp~~~~~~~~~~---~~~rf~tpel~~~~~~~~~~~e~~~~~ 586 (918)
T 3thx_B 523 N---PS--AQY------VTVSGQEFMIEIKNSAV--SCIPTDWVKVGSTK---AVSRFHSPFIVENYRHLNQLREQLVLD 586 (918)
T ss_dssp C---TT--CCC------EEETTEEEEEEEETTSG--GGSCSSCEEEEECS---SEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CC--CEE------EEECCCEEEEEECHHHH--HHCCCEEEEEEECC---CEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 5---66--436------85128789999737877--01998489998347---725997789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCC---CCCCCE
Q ss_conf 99999999999999999999999999999999520320246990300863376677433899044665323---479943
Q 003687 419 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSA 495 (803)
Q Consensus 419 ~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~g~~~i~i~~l~p~~~~---~~~~~~ 495 (803)
..+.+.++...+..+...+......+...|+++|++..+...+||+|++++. ..+.+++.+|+.+. ..++++
T Consensus 587 e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~~~ 661 (918)
T 3thx_B 587 CSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEE-----RKIVIKNGRHPVIDVLLGEQDQY 661 (918)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESS-----CEEEEEEECCHHHHHHTCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCEEEEECCCHHHHHHHCCCCCE
T ss_conf 9999999999999889999999999999999999999973489747754688-----84799725652122231368956
Q ss_pred ECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 1012588----966999806999822899999755754101621156656543057895307877882378552278779
Q 003687 496 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 571 (803)
Q Consensus 496 V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~llaq~G~~VPAe~a~i~~~d~I~~~ig~~d~i~~~~StF~~el~ 571 (803)
|+||+++ |++++|||||||||||+||+++++.+|+|.|+++|++.+.++.++.+|.+++..|++..+.|+|+.+|+
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~ 741 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELT 741 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHH
T ss_pred ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 61566234788708999899987658999999887888624763452111225999999867858899986877658999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCC-CCCCEEEEEEE--
Q ss_conf 999999958999099990899999968899999999999983-59799998268255407532323-22214699974--
Q 003687 572 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKN-AAYKAMGTEYL-- 647 (803)
Q Consensus 572 el~~iL~~at~~sLVLLDEpgsGTD~~dg~aLa~aiLe~L~~-~g~~vIisTH~~eL~~l~~~~~~-i~~~~m~~~~~-- 647 (803)
++..++..+++|+|+||||||+|||+.++.++++++++++.+ .|+++||+||++++..+++..+. +.|.||.+...
T Consensus 742 ~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~ 821 (918)
T 3thx_B 742 DTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSED 821 (918)
T ss_dssp HHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC--
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 99999986669978999689889998999999999999999824986999947689999986251446789999997156
Q ss_pred ------------CCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf ------------89333334775077898169999999399999999999999984323
Q 003687 648 ------------DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 694 (803)
Q Consensus 648 ------------~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~~~ 694 (803)
.+++.|+|++.+|.+++|||+++|+++|+|++||+||+++..++|..
T Consensus 822 ~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 822 ESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp ---------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 43334443457888345863562289987489999998296999999999999999999
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=390.19 Aligned_cols=527 Identities=21% Similarity=0.250 Sum_probs=367.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCC-CCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 9999998861999653158986259998977750022220354689-953100231589999841799986206999357
Q 003687 92 ELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTE-GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE 170 (803)
Q Consensus 92 ~ll~~v~~~~~~~~~~~f~~~~~~~~~rp~pl~~~ta~qlg~~~~~-~ip~ll~~~lp~~~~~~~~~~~r~lLl~pP~~~ 170 (803)
.||.-+++.-.- ... ...+..-....---+--.|-..|.+..+. | -.-|-+++-.-.++.-.|.+|.||++|.--.
T Consensus 223 ~ll~Yl~~~~~~-~~~-~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~-~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~ 299 (765)
T 1ewq_A 223 ALLAYAQRTQGG-ALS-LQPFRFYDPGAFMRLPEATLRALEVFEPLRG-QDTLFSVLDETRTAPGRRLLQSWLRHPLLDR 299 (765)
T ss_dssp HHHHHHHHHHTS-CCC-CCCCEECCGGGSCBCCHHHHHHTTSSSCSSS-CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHC-CCC-CCCCEEECCCCEEEECHHHHHHCCCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 999999996022-125-5786897778869966899973758547896-1169998688879799999999765747899
Q ss_pred H-H----HHHHHHHH------HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
Q ss_conf 8-9----99999998------83046789860789999997410236999989999999995506921899999613534
Q 003687 171 I-A----STIQAICK------LMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPT 239 (803)
Q Consensus 171 ~-a----~~i~~~~~------~~~~~~~~~p~~~~~~~ll~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 239 (803)
- - +++++... -+...=..+|++..+...+..+.++-..+..++..+..+.. +...+.
T Consensus 300 ~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~------l~~~l~------ 367 (765)
T 1ewq_A 300 GPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPE------LRALLG------ 367 (765)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH------HHHHHC------
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH------HHHHHH------
T ss_conf 99999999999997398999988998735778899999997289988999999999999999------999998------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66303588968899999999997600022567753224689999903786355331132221122389999999999999
Q 003687 240 WVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALS 319 (803)
Q Consensus 240 ~~~~g~~~~~~~l~~~c~~~~~~i~~~v~~~~~~~~~~~~~~~ip~~f~~~~e~~~rg~~~~~~~~~~~~~v~~a~~~L~ 319 (803)
+...+ + .+....+.|...+.. +..........|.+.+...+ +.+.+......
T Consensus 368 -l~~~l--~------~~~~l~~~i~~~i~~--~~~~~~~~~~~i~~g~~~~L-----------------d~lr~~~~~~~ 419 (765)
T 1ewq_A 368 -EEVGL--P------DLSPLKEELEAALVE--DPPLKVSEGGLIREGYDPDL-----------------DALRAAHREGV 419 (765)
T ss_dssp -TTSCC--C------CCHHHHHHHHHHBCS--SCCSCTTSSCCBCTTSCHHH-----------------HHHHHHHHHHH
T ss_pred -HHHCC--C------CHHHHHHHHHHHHCC--CCHHHHCCCCCCCCCCCHHH-----------------HHHHHHHHHHH
T ss_conf -77516--5------379999999998634--64344204775378878999-----------------99999999999
Q ss_pred HHHHHCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEC
Q ss_conf 999630377899877530789999753001002543252056110131268988544476-1011027888412066202
Q 003687 320 LAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFST 398 (803)
Q Consensus 320 ~ai~ed~~~~i~~~~~~~~~~~~~~~ei~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~~-lv~~~~~~g~~v~~e~~~t 398 (803)
..+.+ +..+.+.. .+...-.+.|.+. ..|.+.+..... .++++ .++..+. .+.++|++
T Consensus 420 ~~l~~----~~~~~~~~---~~~~~l~i~~~~~--------~gy~i~v~~~~~--~~vp~~~i~~~s~----~~~~rf~t 478 (765)
T 1ewq_A 420 AYFLE----LEERERER---TGIPTLKVGYNAV--------FGYYLEVTRPYY--ERVPKEYRPVQTL----KDRQRYTL 478 (765)
T ss_dssp HHHHH----HHHHHHHH---HCCTTCEEEEETT--------TEEEEEEEGGGG--GGSCTTCEEEEEC----SSEEEEEC
T ss_pred HHHHH----HHHHHHHH---CCCCCEEEEECCC--------EEEEEEEEHHHH--HCCCCCEEEEEEC----CCCCEEEC
T ss_conf 99999----99999997---2999558986264--------159999646765--0398635998722----68757877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEE
Q ss_conf 88999999999999999999999999999999999999999999999999995203202469903008633766774338
Q 003687 399 LKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCL 478 (803)
Q Consensus 399 ~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~~~~~~~P~i~~~~~~g~~~i 478 (803)
+++.+..+++.++..++.....+++.++...+..+...+......+...|++++++..+...+||+|++ + ..+
T Consensus 479 p~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~------~~i 551 (765)
T 1ewq_A 479 PEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-G------DRL 551 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-S------SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC-C------CCE
T ss_conf 899999999999999999999999999999999989999999999999999995499998679334135-7------738
Q ss_pred EEECCCCCCCCCCCCCEECCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 990446653234799431012588-9669998069998228999997557541016211566565430578953078778
Q 003687 479 KMNGLSPYWFDAAEGSAVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 557 (803)
Q Consensus 479 ~i~~l~p~~~~~~~~~~V~ndi~L-g~i~iItGPNgsGKSTlLK~I~~l~llaq~G~~VPAe~a~i~~~d~I~~~ig~~d 557 (803)
.+++.+|+.+.. ++.+|+||+++ |++++|+|||||||||+||+++++..++|.|.++|+..+.++.++++|.+++..|
T Consensus 552 ~i~~~rHP~le~-~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d 630 (765)
T 1ewq_A 552 QIRAGRHPVVER-RTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASD 630 (765)
T ss_dssp EEEEECCTTGGG-TSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC--
T ss_pred EEEEEECCEECC-CCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHHCCCCHHH
T ss_conf 999727863706-8845751105778689999999987689999998656531168553044051343777653197899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCC
Q ss_conf 82378552278779999999958999099990899999968899999999999983597999982682554075323232
Q 003687 558 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 637 (803)
Q Consensus 558 ~i~~~~StF~~el~el~~iL~~at~~sLVLLDEpgsGTD~~dg~aLa~aiLe~L~~~g~~vIisTH~~eL~~l~~~~~~i 637 (803)
++..+.|+|+.+|.+++.++..+++|+|+|+||||+||++.|+.++++++++++.+.++++|++||++++..+. .+++
T Consensus 631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~--~~~v 708 (765)
T 1ewq_A 631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG--LPRL 708 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC--CTTE
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHCC
T ss_conf 98742367789999999999856689789998899888876899999999999996899899992788999765--4160
Q ss_pred CCCEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 2214699974893333347750778981699999993999999999999999843
Q 003687 638 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 692 (803)
Q Consensus 638 ~~~~m~~~~~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~~l~~~~~ 692 (803)
.|.+|.++...+++.|+|++.+|.+++|||+++|+++|+|++||+||++++.++|
T Consensus 709 ~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 709 KNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp EEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 5899999970890789878977899996699999982989999999999999874
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=388.01 Aligned_cols=305 Identities=25% Similarity=0.328 Sum_probs=259.7
Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEE
Q ss_conf 8412066202889999999999999999999999999999999999999999999999999952032024--69903008
Q 003687 389 RKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPA 466 (803)
Q Consensus 389 ~~v~~e~~~t~~l~~~l~~~~~a~~~~~~~~~~il~~L~~~l~~~i~~L~~~~~~~~~a~al~a~a~~a~--~~~~~~P~ 466 (803)
.+.+.++|+|+++++...++..+.++......++..++...+..+...+..+...+...|++++++..+. ..+||+|+
T Consensus 661 t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~ 740 (1022)
T 2o8b_B 661 TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPV 740 (1022)
T ss_dssp ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCE
T ss_pred ECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 13685079615788999999999999999999999999999999999999999999999999957999864367851775
Q ss_pred EECCCCCCCCEEEEECCCCCCCCC--CCCCEECCCCCC-----------CCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 633766774338990446653234--799431012588-----------9669998069998228999997557541016
Q 003687 467 LKDIELDGANCLKMNGLSPYWFDA--AEGSAVHNTVDM-----------QSLFLLTGPNGGGKSSLLRSICAASLLGICG 533 (803)
Q Consensus 467 i~~~~~~g~~~i~i~~l~p~~~~~--~~~~~V~ndi~L-----------g~i~iItGPNgsGKSTlLK~I~~l~llaq~G 533 (803)
+++. .+....+.+++.+|+.+.. .++.+|+||+++ |++++||||||||||||||++|++.+|+|+|
T Consensus 741 ~~~~-~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG 819 (1022)
T 2o8b_B 741 ILLP-EDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMG 819 (1022)
T ss_dssp ECCT-TTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CCCC-CCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEE
T ss_conf 4567-799863999926255799995589557544553355444557788489998899998689999998899986626
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21156656543057895307877882378552278779999999958999099990899999968899999999999983
Q 003687 534 LMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 613 (803)
Q Consensus 534 ~~VPAe~a~i~~~d~I~~~ig~~d~i~~~~StF~~el~el~~iL~~at~~sLVLLDEpgsGTD~~dg~aLa~aiLe~L~~ 613 (803)
+|||++.+.++.+++|+++++..|++..+.|+|+.+|.+++.+++.+++++||||||||+|||+.+|.++++++++++.+
T Consensus 820 ~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 820 CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp CCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88526767797999999976977888615433289999999999748899689997998889867899999999999986
Q ss_pred C-CCEEEEECCCHHHHHCCCCCCCCCCCEEEEEE-------ECCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5-97999982682554075323232221469997-------489333334775077898169999999399999999999
Q 003687 614 I-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY-------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 685 (803)
Q Consensus 614 ~-g~~vIisTH~~eL~~l~~~~~~i~~~~m~~~~-------~~~~l~~tYkL~~G~~~~S~al~iA~~~Glp~~Ii~rA~ 685 (803)
. ++++||+||+++++........+.+++|.+.. .++.+.++|++.+|.+++|||+++|+++|+|++||+||+
T Consensus 900 ~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~ 979 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGH 979 (1022)
T ss_dssp TSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 47998999969899999857854315276999970572337877358885324799998799999998097999999999
Q ss_pred HHHHHHCCC
Q ss_conf 999984323
Q 003687 686 DLYIACGVN 694 (803)
Q Consensus 686 ~l~~~~~~~ 694 (803)
+++..+|..
T Consensus 980 ~~~~~le~~ 988 (1022)
T 2o8b_B 980 RKAREFEKM 988 (1022)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHHHH
T ss_conf 999999978
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=153.60 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=113.1
Q ss_pred EEEECCCCCCCCCCCCCEECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHHH----------------------HH
Q ss_conf 8990446653234799431012588----966999806999822899999755754----------------------10
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GI 531 (803)
Q Consensus 478 i~i~~l~p~~~~~~~~~~V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~ll----------------------aq 531 (803)
+.++++.+.| ++..+++|++| |++++|+|||||||||+||+|+++... ..
T Consensus 5 l~i~~ls~~y----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHC
T ss_conf 9999699998----998889753899959989999999980599999999669989973899999997545566554108
Q ss_pred CCCCCCCCCCCCC---HHHHHH---------------------HHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEE
Q ss_conf 1621156656543---057895---------------------3078778823785522787799-99999958999099
Q 003687 532 CGLMVPAESASIP---YFDAIM---------------------LHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLV 586 (803)
Q Consensus 532 ~G~~VPAe~a~i~---~~d~I~---------------------~~ig~~d~i~~~~StF~~el~e-l~~iL~~at~~sLV 586 (803)
.-.+|++..+.++ ..+++. ..++..+......+.++.++++ ++.+.+.+.+|+++
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88999078757899999999999998769986899999999998869903755892457999999999999997399999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HCCCCCCCCCCCEEEEE
Q ss_conf 990899999968899999999999983597999982682554-07532323222146999
Q 003687 587 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 587 LLDEpgsGTD~~dg~aLa~aiLe~L~~~g~~vIisTH~~eL~-~l~~~~~~i~~~~m~~~ 645 (803)
|+|||++|+|+.....+...+.+..++.|.++|++||+.+.+ .++++...+..+.+...
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 996974367999999999999999985799899994999999987999999989989998
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=150.96 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=113.7
Q ss_pred EEEECCCCCCCCCCCCCEECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHHH------------------HHCCCC
Q ss_conf 8990446653234799431012588----966999806999822899999755754------------------101621
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLM 535 (803)
Q Consensus 478 i~i~~l~p~~~~~~~~~~V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~ll------------------aq~G~~ 535 (803)
+.++++.+.| ++..+++|++| |++++|+|||||||||+||+|+++... ...-.+
T Consensus 4 l~~~~l~~~y----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEE
T ss_conf 9998489998----999999656899879989999968995599999999769988971999999999879977888899
Q ss_pred CCCCCCCCCH---HHH---------------------HHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEEEC
Q ss_conf 1566565430---578---------------------953078778823785522787799-999999589990999908
Q 003687 536 VPAESASIPY---FDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 VPAe~a~i~~---~d~---------------------I~~~ig~~d~i~~~~StF~~el~e-l~~iL~~at~~sLVLLDE 590 (803)
|+++.+.++. .++ ++..++..+......+.++.++++ ++.+.+.+.+|.++|+||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 90687578999999999999977599989999999999988599416539925799999999999999981999999989
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHH-HCCCCCCCCCCCEEEEE
Q ss_conf 999999688999999999999-83597999982682554-07532323222146999
Q 003687 591 ICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 591 pgsGTD~~dg~aLa~aiLe~L-~~~g~~vIisTH~~eL~-~l~~~~~~i~~~~m~~~ 645 (803)
|++++|+.....+. .++..+ .+.|.++|++||+.+.+ .++++...+..+.+...
T Consensus 160 Pts~LD~~~~~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 160 PLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTTTSCHHHHHHHH-HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 87679999999999-999999986798899998899999986999999989989998
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=148.38 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=115.8
Q ss_pred CEEEEECCCCCCCCCCCCCEECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHH-----------------------
Q ss_conf 338990446653234799431012588----96699980699982289999975575-----------------------
Q 003687 476 NCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------------- 528 (803)
Q Consensus 476 ~~i~i~~l~p~~~~~~~~~~V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~l----------------------- 528 (803)
..+.++++.+.|-...++..+++|++| |++++|+|||||||||++|+++++..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHH
T ss_conf 65999848999389887737887469998489899999589955999999996699999629999999987589879998
Q ss_pred HHHCCCCCCCCCCCCC---HHHH---------------------HHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCC
Q ss_conf 4101621156656543---0578---------------------953078778823785522787799-99999958999
Q 003687 529 LGICGLMVPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSR 583 (803)
Q Consensus 529 laq~G~~VPAe~a~i~---~~d~---------------------I~~~ig~~d~i~~~~StF~~el~e-l~~iL~~at~~ 583 (803)
..+.-.|||+....++ ..++ ++..++..+......+.++.++++ +..+.+.+.+|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 73868999278756888899999999998659987899999999999769934761994558999999999999996699
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHH-HCCCCCCCCCCCEEE
Q ss_conf 09999089999996889999999999998-3597999982682554-075323232221469
Q 003687 584 SLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 584 sLVLLDEpgsGTD~~dg~aLa~aiLe~L~-~~g~~vIisTH~~eL~-~l~~~~~~i~~~~m~ 643 (803)
.++|+|||++|+|+.....+. .+++.+. +.|.++|++||+.+.. .++++...+..+.+.
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~-~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHH-HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 999997987568999999999-9999999737999999956899999969999999899899
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=1.00 E-value=1 Score=147.84 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=105.2
Q ss_pred CEECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHH--------------------H----HHCCCCCCCCCCCC--
Q ss_conf 431012588----96699980699982289999975575--------------------4----10162115665654--
Q 003687 494 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------L----GICGLMVPAESASI-- 543 (803)
Q Consensus 494 ~~V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~l--------------------l----aq~G~~VPAe~a~i-- 543 (803)
..+++++++ |++++|+|||||||||++|+++++.. . .+.-.|||+....+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 04687436898699899999999984999999995599999659999999845289889999863569999568756889
Q ss_pred -CHHHHH------------------------HHHCCCCCCC-CCCCCCHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf -305789------------------------5307877882-3785522787799-999999589990999908999999
Q 003687 544 -PYFDAI------------------------MLHMKSYDSP-ADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTE 596 (803)
Q Consensus 544 -~~~d~I------------------------~~~ig~~d~i-~~~~StF~~el~e-l~~iL~~at~~sLVLLDEpgsGTD 596 (803)
...+++ +..++..+.. ....+.++.++++ +..+.+.+.+|.++|+|||++|+|
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 86999999798764115788799999999999977997456509944589999999999999972999999948866699
Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 68899999999999983-59799998268255407532323222146999
Q 003687 597 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 645 (803)
Q Consensus 597 ~~dg~aLa~aiLe~L~~-~g~~vIisTH~~eL~~l~~~~~~i~~~~m~~~ 645 (803)
+.....+. .++..+.+ .|.++|++||+.++..++++...+.++.+...
T Consensus 178 ~~~~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 178 SKTGEKIM-QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEEEE
T ss_conf 89999999-99999999769999999188889974898999989989987
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=147.54 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=108.7
Q ss_pred EEEECCCCCCCCCCCCCEECCCCCC----CCEEEEEECCCCCHHHHHHHHHHHHHH------------------HHCCCC
Q ss_conf 8990446653234799431012588----966999806999822899999755754------------------101621
Q 003687 478 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLM 535 (803)
Q Consensus 478 i~i~~l~p~~~~~~~~~~V~ndi~L----g~i~iItGPNgsGKSTlLK~I~~l~ll------------------aq~G~~ 535 (803)
+.++++.+.+ ++..+++++++ |++++|+|||||||||+||+|+++... ...-.|
T Consensus 4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEE
T ss_conf 9999799998----998889655899869989999968982399999999779988962999999999879864584899
Q ss_pred CCCCCCCCC---HHHH---------------------HHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEEEC
Q ss_conf 156656543---0578---------------------953078778823785522787799-999999589990999908
Q 003687 536 VPAESASIP---YFDA---------------------IMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 590 (803)
Q Consensus 536 VPAe~a~i~---~~d~---------------------I~~~ig~~d~i~~~~StF~~el~e-l~~iL~~at~~sLVLLDE 590 (803)
|++..+.++ ..++ ++..++..+......++++.++++ ++.+.+.+.+|.++|+||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 90686457998899999999976599879999999999988699537628934699999999999999971999899989
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHH-HCCCCCCCCCCCEEE
Q ss_conf 999999688999999999999-83597999982682554-075323232221469
Q 003687 591 ICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 643 (803)
Q Consensus 591 pgsGTD~~dg~aLa~aiLe~L-~~~g~~vIisTH~~eL~-~l~~~~~~i~~~~m~ 643 (803)
|++++|+.....+. ..+..+ .+.+.++|++||+.+.+ .++++...+..+.+.
T Consensus 160 P~s~LD~~~r~~l~-~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 160 PLSNLDANLRMIMR-AEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp TTTTSCHHHHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 75368999999999-9999999856998999918999999869999999899899
Done!