Query 003688
Match_columns 803
No_of_seqs 406 out of 1656
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 3.9E-30 8.4E-35 251.4 14.7 144 121-265 15-158 (198)
2 smart00195 DSPc Dual specifici 100.0 5.6E-29 1.2E-33 235.8 17.5 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 1.6E-28 3.5E-33 262.0 18.4 190 120-313 72-263 (285)
4 cd00127 DSPc Dual specificity 99.9 6.2E-27 1.3E-31 220.5 17.1 138 122-259 1-139 (139)
5 PF00782 DSPc: Dual specificit 99.9 3.3E-27 7.3E-32 221.7 14.0 131 130-261 1-133 (133)
6 KOG1717 Dual specificity phosp 99.9 2.9E-27 6.2E-32 244.6 12.0 141 123-264 172-314 (343)
7 KOG0443 Actin regulatory prote 99.9 8.9E-24 1.9E-28 243.3 11.2 143 269-421 513-657 (827)
8 PRK12361 hypothetical protein; 99.9 1.3E-22 2.8E-27 233.9 17.2 140 122-262 94-237 (547)
9 PTZ00242 protein tyrosine phos 99.8 9.4E-19 2E-23 173.8 15.1 144 120-265 8-161 (166)
10 KOG1719 Dual specificity phosp 99.8 4.2E-18 9E-23 165.4 11.9 141 123-263 25-171 (183)
11 PTZ00393 protein tyrosine phos 99.7 2E-17 4.4E-22 172.0 15.4 122 139-263 107-230 (241)
12 KOG0443 Actin regulatory prote 99.6 1.3E-15 2.8E-20 176.6 8.7 170 273-460 139-321 (827)
13 KOG1720 Protein tyrosine phosp 99.5 5.5E-14 1.2E-18 142.9 13.7 117 142-260 88-206 (225)
14 COG2453 CDC14 Predicted protei 99.5 6.2E-14 1.4E-18 140.8 12.2 96 164-262 69-165 (180)
15 smart00262 GEL Gelsolin homolo 99.5 1.6E-13 3.6E-18 122.0 9.0 76 293-368 14-90 (90)
16 KOG0444 Cytoskeletal regulator 99.4 5.8E-14 1.3E-18 159.5 5.9 147 270-421 619-776 (1255)
17 KOG0444 Cytoskeletal regulator 99.3 2.1E-13 4.5E-18 155.1 0.1 142 268-420 1036-1187(1255)
18 PF05706 CDKN3: Cyclin-depende 99.3 1E-11 2.3E-16 123.4 8.7 107 128-235 41-168 (168)
19 KOG0445 Actin regulatory prote 99.2 3.4E-11 7.3E-16 137.5 9.1 150 272-452 644-799 (919)
20 PF03162 Y_phosphatase2: Tyros 99.2 7.1E-11 1.5E-15 117.6 8.7 117 121-240 5-129 (164)
21 TIGR01244 conserved hypothetic 99.1 5.5E-10 1.2E-14 107.6 13.4 116 123-245 2-128 (135)
22 PF00626 Gelsolin: Gelsolin re 99.1 6.9E-11 1.5E-15 101.3 5.1 69 294-362 7-76 (76)
23 KOG2836 Protein tyrosine phosp 98.9 9.6E-09 2.1E-13 98.7 12.5 116 140-261 33-152 (173)
24 smart00012 PTPc_DSPc Protein t 98.9 1.3E-08 2.9E-13 90.4 10.4 88 169-256 4-100 (105)
25 smart00404 PTPc_motif Protein 98.9 1.3E-08 2.9E-13 90.4 10.4 88 169-256 4-100 (105)
26 PF04273 DUF442: Putative phos 98.7 4.2E-08 9E-13 92.1 8.8 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.6 2.1E-07 4.5E-12 111.8 11.0 100 128-230 261-370 (986)
28 COG5350 Predicted protein tyro 98.5 3.9E-07 8.5E-12 89.5 10.0 113 141-254 25-147 (172)
29 cd00047 PTPc Protein tyrosine 98.5 6.6E-07 1.4E-11 92.3 9.6 81 176-256 139-226 (231)
30 smart00194 PTPc Protein tyrosi 98.4 1.3E-06 2.8E-11 91.8 9.6 81 176-256 167-253 (258)
31 PF13350 Y_phosphatase3: Tyros 98.1 1.4E-05 3.1E-10 79.0 10.1 110 126-236 16-158 (164)
32 COG3453 Uncharacterized protei 98.1 3.5E-05 7.7E-10 73.3 11.7 113 122-241 2-125 (130)
33 PRK15375 pathogenicity island 98.1 1.7E-05 3.7E-10 90.8 10.6 90 174-263 430-530 (535)
34 KOG0445 Actin regulatory prote 98.0 5.5E-06 1.2E-10 95.9 5.7 99 269-373 220-325 (919)
35 KOG2283 Clathrin coat dissocia 98.0 2.7E-05 5.8E-10 88.7 10.9 143 119-265 11-177 (434)
36 KOG1572 Predicted protein tyro 98.0 4.4E-05 9.6E-10 80.0 10.8 119 120-241 57-187 (249)
37 PF04179 Init_tRNA_PT: Initiat 97.9 6.7E-05 1.4E-09 85.9 12.0 134 125-258 291-449 (451)
38 PF00102 Y_phosphatase: Protei 97.8 8.9E-05 1.9E-09 75.4 9.5 69 188-256 153-230 (235)
39 PF14566 PTPlike_phytase: Inos 97.6 0.0001 2.2E-09 72.6 6.5 59 165-225 90-148 (149)
40 PHA02742 protein tyrosine phos 97.5 0.00038 8.3E-09 75.9 10.3 52 201-252 229-285 (303)
41 KOG2386 mRNA capping enzyme, g 97.5 0.00021 4.6E-09 80.2 7.9 96 165-260 84-183 (393)
42 PHA02747 protein tyrosine phos 97.5 0.0004 8.8E-09 76.1 9.7 54 202-255 230-288 (312)
43 PHA02746 protein tyrosine phos 97.5 0.00054 1.2E-08 75.5 9.9 54 202-255 248-306 (323)
44 PHA02740 protein tyrosine phos 97.4 0.0008 1.7E-08 73.5 10.3 52 201-252 221-277 (298)
45 COG2365 Protein tyrosine/serin 97.3 0.00032 6.9E-09 74.7 5.8 122 128-249 53-184 (249)
46 PHA02738 hypothetical protein; 97.3 0.0011 2.3E-08 73.1 9.8 54 201-254 227-285 (320)
47 KOG0792 Protein tyrosine phosp 96.9 0.0032 6.9E-08 77.2 9.1 80 175-254 1036-1121(1144)
48 COG5599 PTP2 Protein tyrosine 96.5 0.0068 1.5E-07 65.0 7.5 78 175-256 193-287 (302)
49 KOG0789 Protein tyrosine phosp 96.1 0.017 3.6E-07 64.6 8.4 55 200-254 298-358 (415)
50 KOG0790 Protein tyrosine phosp 96.1 0.0081 1.8E-07 68.0 5.6 109 141-252 373-510 (600)
51 KOG0260 RNA polymerase II, lar 95.5 0.04 8.6E-07 68.4 8.6 42 523-564 1532-1574(1605)
52 KOG0791 Protein tyrosine phosp 95.0 0.076 1.6E-06 59.4 8.3 62 201-262 287-353 (374)
53 KOG1984 Vesicle coat complex C 94.6 0.098 2.1E-06 63.6 8.2 56 273-328 859-914 (1007)
54 PF14671 DSPn: Dual specificit 94.2 0.2 4.3E-06 49.6 8.1 102 125-242 3-111 (141)
55 KOG0260 RNA polymerase II, lar 94.1 0.3 6.5E-06 61.1 10.9 11 65-75 772-782 (1605)
56 COG5028 Vesicle coat complex C 89.9 0.73 1.6E-05 55.8 7.2 32 297-328 738-769 (861)
57 PF00626 Gelsolin: Gelsolin re 89.7 0.28 6E-06 41.9 2.7 33 719-758 5-37 (76)
58 PTZ00395 Sec24-related protein 89.1 1.3 2.9E-05 56.7 9.0 35 294-328 1433-1467(1560)
59 KOG4228 Protein tyrosine phosp 86.7 0.79 1.7E-05 57.5 5.0 58 188-245 713-779 (1087)
60 KOG0793 Protein tyrosine phosp 86.0 1.7 3.6E-05 52.4 6.9 62 201-262 927-995 (1004)
61 smart00262 GEL Gelsolin homolo 85.8 0.66 1.4E-05 41.3 2.8 30 723-759 17-46 (90)
62 KOG4471 Phosphatidylinositol 3 81.5 2.4 5.3E-05 50.3 5.7 38 187-224 360-398 (717)
63 KOG1985 Vesicle coat complex C 80.1 3.9 8.5E-05 50.2 7.0 31 296-326 764-794 (887)
64 KOG4228 Protein tyrosine phosp 77.1 3.6 7.7E-05 52.0 5.6 45 201-245 1018-1067(1087)
65 cd01518 RHOD_YceA Member of th 67.4 15 0.00032 33.0 6.0 29 199-230 59-87 (101)
66 PF06602 Myotub-related: Myotu 65.4 13 0.00028 42.0 6.3 22 199-220 229-250 (353)
67 PLN00162 transport protein sec 61.5 23 0.0005 44.0 8.0 70 295-364 635-720 (761)
68 KOG1089 Myotubularin-related p 56.3 17 0.00036 43.6 5.2 29 192-220 334-363 (573)
69 COG0607 PspE Rhodanese-related 50.2 32 0.00069 30.8 5.1 69 143-226 14-84 (110)
70 PLN02160 thiosulfate sulfurtra 45.3 30 0.00066 33.6 4.4 30 198-230 78-107 (136)
71 cd01533 4RHOD_Repeat_2 Member 44.9 40 0.00086 30.8 4.9 27 200-229 65-91 (109)
72 PRK01415 hypothetical protein; 42.0 47 0.001 36.0 5.6 29 198-229 168-196 (247)
73 smart00400 ZnF_CHCC zinc finge 39.1 27 0.00059 28.7 2.6 32 205-238 23-54 (55)
74 cd01448 TST_Repeat_1 Thiosulfa 38.2 49 0.0011 30.6 4.5 31 198-230 76-106 (122)
75 PF00581 Rhodanese: Rhodanese- 36.9 1.1E+02 0.0025 26.9 6.5 82 146-230 10-98 (113)
76 PRK00142 putative rhodanese-re 35.0 56 0.0012 36.4 5.0 28 200-230 170-197 (314)
77 PF03668 ATP_bind_2: P-loop AT 34.7 47 0.001 36.8 4.3 19 203-221 244-262 (284)
78 PF03861 ANTAR: ANTAR domain; 32.7 61 0.0013 26.8 3.7 26 216-241 15-40 (56)
79 cd01528 RHOD_2 Member of the R 32.2 89 0.0019 28.0 5.0 28 200-230 57-84 (101)
80 PRK10886 DnaA initiator-associ 30.9 96 0.0021 32.3 5.6 39 183-224 23-61 (196)
81 PRK11784 tRNA 2-selenouridine 30.8 4.6E+02 0.0099 29.8 11.3 63 302-366 161-235 (345)
82 cd01523 RHOD_Lact_B Member of 29.7 60 0.0013 28.9 3.5 28 199-229 59-86 (100)
83 PRK05416 glmZ(sRNA)-inactivati 29.7 55 0.0012 36.1 3.8 37 185-221 222-265 (288)
84 PRK05320 rhodanese superfamily 29.5 93 0.002 33.7 5.4 27 200-229 174-200 (257)
85 TIGR03865 PQQ_CXXCW PQQ-depend 28.8 89 0.0019 31.3 4.8 30 199-230 114-143 (162)
86 PF01807 zf-CHC2: CHC2 zinc fi 26.9 59 0.0013 30.0 2.9 37 205-243 54-90 (97)
87 PRK05728 DNA polymerase III su 26.3 80 0.0017 31.1 3.9 26 185-210 13-38 (142)
88 cd01522 RHOD_1 Member of the R 26.1 92 0.002 29.1 4.1 20 198-218 61-80 (117)
89 PF05763 DUF835: Protein of un 25.8 1.6E+02 0.0035 29.1 5.9 50 182-246 59-108 (136)
90 cd01520 RHOD_YbbB Member of th 25.5 1.1E+02 0.0024 28.9 4.7 30 198-229 83-112 (128)
91 KOG0235 Phosphoglycerate mutas 25.1 2.1E+02 0.0046 30.5 7.0 52 179-236 130-185 (214)
92 PRK14116 gpmA phosphoglyceromu 22.7 1.9E+02 0.004 30.5 6.1 51 179-235 148-202 (228)
93 COG2927 HolC DNA polymerase II 22.4 1E+02 0.0022 31.1 3.7 22 188-209 16-37 (144)
94 PF04364 DNA_pol3_chi: DNA pol 21.4 95 0.0021 30.4 3.4 24 187-210 15-38 (137)
95 PRK06646 DNA polymerase III su 21.4 1.1E+02 0.0024 30.9 3.9 27 185-211 13-39 (154)
96 KOG1015 Transcription regulato 21.4 54 0.0012 41.8 2.0 145 187-355 681-830 (1567)
97 cd01534 4RHOD_Repeat_3 Member 21.1 1.1E+02 0.0024 27.0 3.5 27 200-229 55-81 (95)
98 COG1660 Predicted P-loop-conta 20.2 1.6E+02 0.0035 32.6 5.0 22 198-219 237-261 (286)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.9e-30 Score=251.43 Aligned_cols=144 Identities=32% Similarity=0.513 Sum_probs=135.7
Q ss_pred ccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003688 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (803)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~ 200 (803)
..+++|++.|||++--.|.+...|+++|||+|||.+.+. |+..-.++.|..+|+.|.+...+.++|+.+.+.|+....+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 458899999999987888999999999999999987655 5666778999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhccC
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~~~ 265 (803)
||++||||.+|+|||+++|+||||++.+|++.||+.+||++||+|.||.||++||+.||.++++.
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999754
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=5.6e-29 Score=235.80 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=128.9
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCC
Q 003688 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (803)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~Gg 202 (803)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...|..+++||++++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999976543 34567899999999998778888999999999999999999
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHH
Q 003688 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (803)
Q Consensus 203 rVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~Ekk 261 (803)
+|||||.+|+|||+++++||||+.+|+++++|+++|+++||.+.||.+|+.||..||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999973
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.6e-28 Score=262.02 Aligned_cols=190 Identities=35% Similarity=0.511 Sum_probs=152.4
Q ss_pred cccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCC-ccCC-CcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003688 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE-YFKG-DLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (803)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe-~~~~-~i~yl~IpI~D~~~~dL~~~L~eai~fI~ea 197 (803)
...+.+|.|+||+|+...+.+.+.++++||+||||+....... +... ++.|+++++.|.+..+|..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999987654332 2333 8999999999999999999999999999999
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhccCCCCCccccceee
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMPASPNSMLRIYR 277 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~~~~asp~s~~RLYR 277 (803)
+.+|++|||||.+|+|||+|++|||||+.++|++++|+++|+.+||.+.||.||+.||++|++.+........ .+.
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~~----~~~ 227 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQG----GNL 227 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcccc----ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543322 112
Q ss_pred ecCCCCCCCccccccccCCccccCCCCCCeEEEecC
Q 003688 278 IAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVP 313 (803)
Q Consensus 278 V~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtp 313 (803)
............++............++..|.+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG1716|consen 228 PSPDSISQEDSSEGDLSSSHKPTSAPSSLSFPLKSP 263 (285)
T ss_pred cCcccccccccccccccccccccccccccccccccc
Confidence 222223333333333333334444455555555443
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=6.2e-27 Score=220.47 Aligned_cols=138 Identities=42% Similarity=0.676 Sum_probs=128.4
Q ss_pred cceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003688 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (803)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~p-e~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~ 200 (803)
++++|.|+||+|+.+.+.+.+.|+++||++||||+..... .....++.|+++++.|....++...+..+++||+..+++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999875543 344578999999999998888888899999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHH
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~E 259 (803)
|++|||||.+|+|||+++++||||+.+++++++|+++||++||.+.||.+|+.||.+||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=3.3e-27 Score=221.72 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=121.9
Q ss_pred eEECChhhhCCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEE
Q 003688 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (803)
Q Consensus 130 LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe--~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVH 207 (803)
||||+...+. .+.|+++||++||||+...... ....++.|+++|+.|....++...|+.+++||+++.++|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998754331 345689999999999888888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHH
Q 003688 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (803)
Q Consensus 208 C~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~Ekk 261 (803)
|.+|+|||+++++||||++++|++++|+++|+++||.+.||.+|++||.+|+++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999974
No 6
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=2.9e-27 Score=244.62 Aligned_cols=141 Identities=28% Similarity=0.561 Sum_probs=132.4
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCC--CcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003688 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (803)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe~~~~--~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~ 200 (803)
.-+|+|+||||+..++.|.+.|+++||++|||++... |+.|+. .+.|+.||+.|+...++..+|.+|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 4589999999999999999999999999999987544 666654 6899999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhcc
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~~ 264 (803)
+..|||||.+|||||+||++||||++..+++.+||++|+.++..|.||-+|+.||..||+.+..
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998744
No 7
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.90 E-value=8.9e-24 Score=243.25 Aligned_cols=143 Identities=24% Similarity=0.360 Sum_probs=122.1
Q ss_pred CccccceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhhcCCc
Q 003688 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (803)
Q Consensus 269 p~s~~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~e~~~~~ 348 (803)
+...+|||||+|+.+++.+++ ||++.+++|||+|||||+++..+|+|+|++|+. .++++|..+....+ ..+
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~----~e~e~A~~v~~~l~-~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSG----DEREMAKRVLDLLK-RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCH----HHHHHHHHHHHHHh-cCC
Confidence 445589999999999999887 999999999999999999999999999999998 66666666665554 244
Q ss_pred EEEecCCCChhhHHHhcCCCCCCCCCC-CccccCCCCceeEeecCCccEE-EecccCCCCCCCCchhhhhhhcCC
Q 003688 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKALDGG 421 (803)
Q Consensus 349 I~vV~EG~EpeeFW~aLGgk~~y~~~~-~~~~~~~~pRLF~cSnasG~f~-eEi~~~F~Q~DLd~E~~~~~~~~g 421 (803)
-+.+.||+||++||++||||.+|+... ........||||.|++.+|.|+ +||. +|+|+||+.|++|.+++|.
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~-~F~QdDL~tdDi~lLDt~~ 657 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIY-NFTQDDLMTDDIMLLDTWS 657 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEec-CcchhhccccceEEEecCc
Confidence 678999999999999999999999844 3444578899999999999999 8885 9999999999987655443
No 8
>PRK12361 hypothetical protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=233.90 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=126.0
Q ss_pred cceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC---CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003688 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (803)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~p---e~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal 198 (803)
.+++|.|+||||+...+.|.+.|+++||++||||+.+... .....++.|+++|+.|...+++ .+|+++++||++++
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~ 172 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQV 172 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999865322 2345678999999999877665 78999999999999
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHh
Q 003688 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (803)
Q Consensus 199 ~~GgrVLVHC~aGvSRSaTVVIAYLM~~-~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL 262 (803)
++|++|||||.+|+|||+++++||||++ .++++++|+++||++||.+.||.+++++|.+|.+..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999977 589999999999999999999999999999988654
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.79 E-value=9.4e-19 Score=173.83 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=116.2
Q ss_pred cccceeccCCeEECChhhh----CCHHHHHHCCCcEEEEcccCCCC-Ccc-CCCcEEEEEEccCCCCCchHHHHHHHHHH
Q 003688 120 DKECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDY 193 (803)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A----~d~e~Lk~~GIt~VLNLa~e~~p-e~~-~~~i~yl~IpI~D~~~~dL~~~L~eai~f 193 (803)
+..++-|..++..=..+.. .+.+.|+++||++||+++....+ +.+ ..++.++++|+.|...+.. ..+...+++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~ 86 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRL 86 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHH
Confidence 4557777787777665555 34588999999999998653222 122 3489999999988765554 456777888
Q ss_pred HHHHHhc----CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhccC
Q 003688 194 FEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (803)
Q Consensus 194 I~eal~~----GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~~~ 265 (803)
+++.+.. |++|+|||.+|+|||++++++|||+..++++++|+++||++||.+ +|..|+..|.+|.+.+++.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 8877654 999999999999999999999999998999999999999999986 5899999999999877543
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.76 E-value=4.2e-18 Score=165.42 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=121.8
Q ss_pred ceeccCCeEECChhhh-CCHHHHHHCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCCCCCchHHHHHHHHHHHHH
Q 003688 123 CSRIADHIYLGSDAVA-KNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDSPSEDITSILYDVFDYFED 196 (803)
Q Consensus 123 iSeI~p~LYLGs~~~A-~d~e~Lk~~GIt~VLNLa~e~~pe----~~-~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~e 196 (803)
+-+|.+++.+|-.+-. .+.+.+++.|+..||.|.+..+-. .+ .-+++++.||..|.....-...+.++++||++
T Consensus 25 wy~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k 104 (183)
T KOG1719|consen 25 WYRIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHK 104 (183)
T ss_pred eeeecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHh
Confidence 3378888888876543 577889999999999986533211 11 34889999999998776666889999999999
Q ss_pred HHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhc
Q 003688 197 VREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (803)
Q Consensus 197 al~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~ 263 (803)
....|+.|||||++|++||+|+|+||||+..+|+.++|+++||++||.+...+++++.|.+|.+..-
T Consensus 105 ~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 105 NASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIV 171 (183)
T ss_pred ccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.74 E-value=2e-17 Score=172.01 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=106.4
Q ss_pred CCHHHHHHCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHH
Q 003688 139 KNRGILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (803)
Q Consensus 139 ~d~e~Lk~~GIt~VLNLa~e~~p--e~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSa 216 (803)
...+.|++.||++||++++...+ .....++.++++++.|...+.. ..+++.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 45688999999999998764432 1234589999999999887765 66888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHhc
Q 003688 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (803)
Q Consensus 217 TVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL~ 263 (803)
++++||||. .||++++|+++||++||.+ +|..+++.|.+|+++..
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 999999998 6999999999999999987 68999999999998764
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.60 E-value=1.3e-15 Score=176.63 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=130.0
Q ss_pred cceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhhcC-CcEEE
Q 003688 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQ-GQITS 351 (803)
Q Consensus 273 ~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~e~~~-~~I~v 351 (803)
.||||+.|. +.|+..++++.++|||.+||||||+++.||+|+|.+++..||.+|+++|++|++.++.+ .+|.+
T Consensus 139 ~rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 499999997 56888899999999999999999999999999999999999999999999999998654 46778
Q ss_pred ecCCCC-----hhhHHHhcCCCCC-CCCC----CCccccCCCCceeEeecCCccEE-Eec-ccCCCCCCCCchhhhhhhc
Q 003688 352 IKEGEE-----PLEFWDALVRGQF-FADG----CNKEEVKNEQVSFSGSNKIATLM-QDG-AGEIDEYDLDFELFHKALD 419 (803)
Q Consensus 352 V~EG~E-----peeFW~aLGgk~~-y~~~----~~~~~~~~~pRLF~cSnasG~f~-eEi-~~~F~Q~DLd~E~~~~~~~ 419 (803)
|+.|++ ..+||..+||..+ .+.. ..........|||+|++++|.+. .++ .++++|+-|+.++.|.++.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 887653 4579999988766 3331 11111267889999999999988 444 3469999999999998888
Q ss_pred CCCCCCeeccCCCCceeecCccccchhhhhhhcccchhhhh
Q 003688 420 GGVVPPFSVSNAGSETCVPARESGWCRLRRKFVNGLMREFV 460 (803)
Q Consensus 420 ~g~~p~~~~~~~~~e~~lp~~~~~w~~~~~~~~~~~~~~~~ 460 (803)
|| =-+|+= -|+++-+- -||=|...-.||+
T Consensus 293 g~--~~IfVW-~Gr~as~~---------ERkaAm~~AeeFl 321 (827)
T KOG0443|consen 293 GG--GEIFVW-KGRQASLD---------ERKAAMSSAEEFL 321 (827)
T ss_pred CC--ceEEEE-eCCCCCHH---------HHHHHHHHHHHHH
Confidence 86 233332 12332221 2355555557777
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.54 E-value=5.5e-14 Score=142.93 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=99.3
Q ss_pred HHHHHCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHH
Q 003688 142 GILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (803)
Q Consensus 142 e~Lk~~GIt~VLNLa~e~~p--e~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVV 219 (803)
..++.++++.|+.+.+...+ .+...+|.++++++.|...++. ..+.+.++.++.+.+ |++|.|||++|+||+++|+
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 56778899999998765432 2334579999999999998887 567788888888888 9999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHH
Q 003688 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (803)
Q Consensus 220 IAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~Ek 260 (803)
+||||+.+||+..||++.||.+||.+-..+.+...|.++..
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999988777777777766554
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.52 E-value=6.2e-14 Score=140.83 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=81.5
Q ss_pred cCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHhc
Q 003688 164 FKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAAR 242 (803)
Q Consensus 164 ~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~-~gmSleeAl~~VRs~R 242 (803)
...++.+.++|+.|...+++ ..+++++++|++++.+|++|+|||++|+|||+||++||||++ +++..++|+.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 34678999999999999988 789999999999999999999999999999999999999999 5667777788888888
Q ss_pred CccccChhhHHHHHHHHHHh
Q 003688 243 GVTNPNMGFACQLLLCQKRV 262 (803)
Q Consensus 243 P~i~PN~gF~~QL~~~EkkL 262 (803)
+. ++....+++..++...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 77 6666666666555543
No 15
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.47 E-value=1.6e-13 Score=122.03 Aligned_cols=76 Identities=26% Similarity=0.355 Sum_probs=67.9
Q ss_pred ccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCcEEEecCCCChhhHHHhcCCC
Q 003688 293 LLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVRG 368 (803)
Q Consensus 293 ~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~e~-~~~~I~vV~EG~EpeeFW~aLGgk 368 (803)
.++++...+|+++||||||++..||+|+|++|+..++..|...|..+.+..+ ...+|.+|.||.||.+||+.|||.
T Consensus 14 ~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~~ 90 (90)
T smart00262 14 PEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGGW 90 (90)
T ss_pred EEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCCC
Confidence 3567888999999999999999999999999999999999999988887664 345799999999999999999973
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=5.8e-14 Score=159.46 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=118.8
Q ss_pred ccccceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHh-hcCCc
Q 003688 270 NSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYE-KAQGQ 348 (803)
Q Consensus 270 ~s~~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~e-~~~~~ 348 (803)
--++||||+.++....... -|++..+|||+|.||+||.|..||||.|.++..+...+|+.+|++|.+.+ ++..+
T Consensus 619 ~h~TRlYrv~~~g~~i~lE-----PVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~E 693 (1255)
T KOG0444|consen 619 AHLTRLYRVGVNGTAIELE-----PVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSE 693 (1255)
T ss_pred HHhhhhheeccccceeEee-----ccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCcee
Confidence 4568999998874333222 24567899999999999999999999999999999999999999999988 45568
Q ss_pred EEEecCCCChhhHHHhcCCCCCCCC----CCCcccc-CCCCceeEeecCCccEE----Eeccc-CCCCCCCCchhhhhhh
Q 003688 349 ITSIKEGEEPLEFWDALVRGQFFAD----GCNKEEV-KNEQVSFSGSNKIATLM----QDGAG-EIDEYDLDFELFHKAL 418 (803)
Q Consensus 349 I~vV~EG~EpeeFW~aLGgk~~y~~----~~~~~~~-~~~pRLF~cSnasG~f~----eEi~~-~F~Q~DLd~E~~~~~~ 418 (803)
|+.+.+|+|+.+||++|||.++.+. .+.++++ ...||||++.-.-|++. ++.+. ..+|+-|+...||.++
T Consensus 694 I~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLD 773 (1255)
T KOG0444|consen 694 IELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILD 773 (1255)
T ss_pred eehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEe
Confidence 9999999999999999999987755 4445555 77899999999889887 22232 5678888888888776
Q ss_pred cCC
Q 003688 419 DGG 421 (803)
Q Consensus 419 ~~g 421 (803)
.+.
T Consensus 774 c~s 776 (1255)
T KOG0444|consen 774 CNS 776 (1255)
T ss_pred cCC
Confidence 554
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=2.1e-13 Score=155.09 Aligned_cols=142 Identities=18% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCccccceeeecCC-CCCCCccccccccCCccccCCCCCCeEEEecCC-------ceEEEecCCCChhhhHHHHHHHHHH
Q 003688 268 SPNSMLRIYRIAPH-SSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS-------AIYVWIGKNCSVMMSNRAREAANQV 339 (803)
Q Consensus 268 sp~s~~RLYRV~g~-S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps-------~IYVWiGk~ss~~er~~a~~~A~~I 339 (803)
...+.+.+|+++.+ +...++.| ++.+.+..|||..||||..|. .+|+|.|+.|+. .+..+|..+
T Consensus 1036 ~G~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp----~e~~~a~d~ 1107 (1255)
T KOG0444|consen 1036 LGGKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDP----REHEFASDL 1107 (1255)
T ss_pred hcCCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCCh----HHHHHHHHh
Confidence 34577889999987 44556666 899999999999999998763 589999999998 777777665
Q ss_pred HHHh-hcCCcEEEecCCCChhhHHHhcCCCCCCCCCCCccccCCCCceeEeecCCccEE-EecccCCCCCCCCchhhhhh
Q 003688 340 IRYE-KAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKA 417 (803)
Q Consensus 340 ~~~e-~~~~~I~vV~EG~EpeeFW~aLGgk~~y~~~~~~~~~~~~pRLF~cSnasG~f~-eEi~~~F~Q~DLd~E~~~~~ 417 (803)
.... ...-.+++++||+|+++||..+|++.+|.++. .+....|||+|+|.+|+|. .|.+..|+||||+.++++..
T Consensus 1108 ~~~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~---~~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~l 1184 (1255)
T KOG0444|consen 1108 VVRDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDS---SFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMIL 1184 (1255)
T ss_pred cCccccchhhhhccCCccchHHHhcccCCCCccchhH---HHHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhh
Confidence 4332 22224778999999999999999999998753 2355679999999999999 88888999999999999876
Q ss_pred hcC
Q 003688 418 LDG 420 (803)
Q Consensus 418 ~~~ 420 (803)
+-|
T Consensus 1185 dng 1187 (1255)
T KOG0444|consen 1185 DNG 1187 (1255)
T ss_pred ccc
Confidence 544
No 18
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.27 E-value=1e-11 Score=123.36 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCeEECChhh----------hCCHHHHHHCCCcEEEEcccCCC------CC----ccCCCcEEEEEEccCCCCCchHHHH
Q 003688 128 DHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFVC------PE----YFKGDLVYKTLWLQDSPSEDITSIL 187 (803)
Q Consensus 128 p~LYLGs~~~----------A~d~e~Lk~~GIt~VLNLa~e~~------pe----~~~~~i~yl~IpI~D~~~~dL~~~L 187 (803)
..|.+...+- ..|.+.|+..|++.||.++...+ +. +-..++.++++||.|...+++.. +
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-A 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-H
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-H
Confidence 4566655544 35678899999999999864211 21 12358999999999999988743 4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHH
Q 003688 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (803)
Q Consensus 188 ~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~-gmSleeAl 235 (803)
.++++.|...+++|++|+|||++|+|||++|++++|+... .++.++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 5678888899999999999999999999999999998764 58999986
No 19
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.20 E-value=3.4e-11 Score=137.53 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=118.6
Q ss_pred ccceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCC--ceEEEecCCCChhhhHHHHHHHHHHHHHhh---cC
Q 003688 272 MLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYEK---AQ 346 (803)
Q Consensus 272 ~~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps--~IYVWiGk~ss~~er~~a~~~A~~I~~~e~---~~ 346 (803)
..|||+|+|+.+..+... ++.+..++|.|+-.||+..++ .+|+|+|.++-...+..+..+|+++.++.. .+
T Consensus 644 ~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~ 719 (919)
T KOG0445|consen 644 EERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSK 719 (919)
T ss_pred hhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCcccc
Confidence 457999999866655544 889999999999999998765 699999999999999999999999998862 34
Q ss_pred CcEEEecCCCChhhHHHhcCCCCCCCCCCCccccCCCCceeEeecCCccEEEecccC-CCCCCCCchhhhhhhcCCCCCC
Q 003688 347 GQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAGE-IDEYDLDFELFHKALDGGVVPP 425 (803)
Q Consensus 347 ~~I~vV~EG~EpeeFW~aLGgk~~y~~~~~~~~~~~~pRLF~cSnasG~f~eEi~~~-F~Q~DLd~E~~~~~~~~g~~p~ 425 (803)
..+++|+||.|+..||++||-|. +.+.+|||..+... ..|..++ -|+ +.+.|.+||.+
T Consensus 720 ~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~q---a~els~p~rc~----~pFsQ~~Ly~a---- 778 (919)
T KOG0445|consen 720 VTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQ---ATELSYPARCP----MPFSQEDLYSA---- 778 (919)
T ss_pred ceeEeecCCCCchhhhhhccccc----------ccccceeeeccchh---hhhccCcccCC----CcccHHHHhhh----
Confidence 57899999999999999999653 56789999987654 2222222 233 55555666665
Q ss_pred eeccCCCCceeecCccccchhhhhhhc
Q 003688 426 FSVSNAGSETCVPARESGWCRLRRKFV 452 (803)
Q Consensus 426 ~~~~~~~~e~~lp~~~~~w~~~~~~~~ 452 (803)
||.|+|+|.||=- |..-| |||
T Consensus 779 -fLvD~gdelwLW~----w~s~r-~~A 799 (919)
T KOG0445|consen 779 -FLVDNGDELWLWQ----WASDR-KSA 799 (919)
T ss_pred -eeeccCCeeEeeh----hhhHH-HHH
Confidence 8999999999965 88888 554
No 20
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.17 E-value=7.1e-11 Score=117.63 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=76.3
Q ss_pred ccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCc-----cCCCcEEEEEEccCCCCC--c-hHHHHHHHHH
Q 003688 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE--D-ITSILYDVFD 192 (803)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe~-----~~~~i~yl~IpI~D~~~~--d-L~~~L~eai~ 192 (803)
.+...|.++||-|+.+.+.+...|+++||+.||+|..+..+.. -..++.++++++...... . -...+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 4567899999999999999999999999999999987643321 146899999998754431 1 1234555555
Q ss_pred HHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003688 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (803)
Q Consensus 193 fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs 240 (803)
.|.+. .+.+|||||..|..|+++|+++|- +.+||++..|++..+.
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 55443 457999999999999999999988 7889999999998875
No 21
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.14 E-value=5.5e-10 Score=107.61 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=85.5
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003688 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (803)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~----pe~-------~~~~i~yl~IpI~D~~~~dL~~~L~eai 191 (803)
+.+|.+.+|+++.....+.+.|+++||+.|||+....+ |.. ...++.|+++|+..... +- ..+....
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HHHHHHH
Confidence 45899999999999999999999999999999965322 211 12589999999875332 11 1122222
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCcc
Q 003688 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVT 245 (803)
Q Consensus 192 ~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i 245 (803)
++++ ...++||+||.+|. |++++.+.++.. .|++.+++++..+..-..+
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 2232 34689999999999 998887766665 6999999999998775444
No 22
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.11 E-value=6.9e-11 Score=101.28 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=60.9
Q ss_pred cCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHH-HHhhcCCcEEEecCCCChhhHH
Q 003688 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (803)
Q Consensus 294 ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~-~~e~~~~~I~vV~EG~EpeeFW 362 (803)
.+..+..+|+++||||||++..||+|+|++|+..++..+...|..+. ........+..+.||.|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 56778999999999999999999999999999999999999998888 4434555778889999999998
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.94 E-value=9.6e-09 Score=98.75 Aligned_cols=116 Identities=25% Similarity=0.296 Sum_probs=82.7
Q ss_pred CHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH-H-hcCCeEEEEcCCCCchH
Q 003688 140 NRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV-R-EQGGRVFVHCCQGVSRS 215 (803)
Q Consensus 140 d~e~Lk~~GIt~VLNLa~e~~pe--~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~ea-l-~~GgrVLVHC~aGvSRS 215 (803)
-.+.|+++|++.||-+++..... .-.++|..+..+..|...+.- ...++=...+... . +-|..|.|||.+|+||.
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra 111 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA 111 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc
Confidence 35789999999999988643321 234578888888877654432 2223222222221 2 34789999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHH
Q 003688 216 TSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (803)
Q Consensus 216 aTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~Ekk 261 (803)
+.+|+..|+.. ||.+++|+++||++|..+ .|. +||..+|+.
T Consensus 112 pvlvalalie~-gmkyedave~ir~krrga-~n~---kql~~leky 152 (173)
T KOG2836|consen 112 PVLVALALIEA-GMKYEDAVEMIRQKRRGA-INS---KQLLYLEKY 152 (173)
T ss_pred hHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccH---HHHHHHHHh
Confidence 99999888876 999999999999999885 665 455555554
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.88 E-value=1.3e-08 Score=90.36 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 003688 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (803)
Q Consensus 169 ~yl~IpI~D~~~~dL~~~L~eai~fI~eal~---~GgrVLVHC~aGvSRSaTVVIAYLM~~~------gmSleeAl~~VR 239 (803)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555665555444556666666665554 3689999999999999999999999773 268889999999
Q ss_pred HhcCccccChhhHHHHH
Q 003688 240 AARGVTNPNMGFACQLL 256 (803)
Q Consensus 240 s~RP~i~PN~gF~~QL~ 256 (803)
..|+..-.+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00012 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99998877766655543
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.88 E-value=1.3e-08 Score=90.36 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 003688 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (803)
Q Consensus 169 ~yl~IpI~D~~~~dL~~~L~eai~fI~eal~---~GgrVLVHC~aGvSRSaTVVIAYLM~~~------gmSleeAl~~VR 239 (803)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555665555444556666666665554 3689999999999999999999999773 268889999999
Q ss_pred HhcCccccChhhHHHHH
Q 003688 240 AARGVTNPNMGFACQLL 256 (803)
Q Consensus 240 s~RP~i~PN~gF~~QL~ 256 (803)
..|+..-.+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00404 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99998877766655543
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.72 E-value=4.2e-08 Score=92.09 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=55.4
Q ss_pred ceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC-C---Cc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003688 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (803)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~-p---e~-------~~~~i~yl~IpI~D~~~~dL~~~L~eai 191 (803)
+.+|.+.+|++++....+.+.|++.||+.|||+....+ + .. ...|+.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 67899999999999999999999999999999964322 1 11 1348999999997532 21 13334
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 003688 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (803)
Q Consensus 192 ~fI~eal~~GgrVLVHC~aGvSRSaTVVI 220 (803)
.|.+......++||+||..|. |+.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 444333345689999999999 9977644
No 27
>PLN02727 NAD kinase
Probab=98.58 E-value=2.1e-07 Score=111.84 Aligned_cols=100 Identities=11% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCeEECChhhhCCHHHHHHCCCcEEEEcccCCCC--Ccc--------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003688 128 DHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (803)
Q Consensus 128 p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~p--e~~--------~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~ea 197 (803)
-.+|.++++.+.+.+.|.++||+.|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 261 ~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~- 338 (986)
T PLN02727 261 AAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD- 338 (986)
T ss_pred eeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh-
Confidence 3689999999999999999999999999764431 121 1479999999977655443 445555555544
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
...++||+||+.|..|+++++++||.+..+..
T Consensus 339 -slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 -SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999886654
No 28
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.54 E-value=3.9e-07 Score=89.49 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=82.5
Q ss_pred HHHHHHCCCcEEEEcccCCCCCccCCCc---EEEEEEccCCCCC------chHHHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 003688 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSPSE------DITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (803)
Q Consensus 141 ~e~Lk~~GIt~VLNLa~e~~pe~~~~~i---~yl~IpI~D~~~~------dL~~~L~eai~fI~eal~~GgrVLVHC~aG 211 (803)
.+...+.|-+++|++.........+.++ .++.+.+.|...+ .-..+.+.+++|+++.-+. .++||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 4566778999999997532222222222 4455655554332 2346789999999998765 8999999999
Q ss_pred CchHHHHHH-HHHHhhcCCCHHHHHHHHHHhcCccccChhhHHH
Q 003688 212 VSRSTSLVI-AYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (803)
Q Consensus 212 vSRSaTVVI-AYLM~~~gmSleeAl~~VRs~RP~i~PN~gF~~Q 254 (803)
+|||.+++. |-|.....|.-.++.+.+|..+|.+.||...+.-
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 999976543 3566677999999999999999999999876543
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.45 E-value=6.6e-07 Score=92.32 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=58.6
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHh--cCCeEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHhcCccccC
Q 003688 176 QDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNPN 248 (803)
Q Consensus 176 ~D~~~~dL~~~L~eai~fI~eal~--~GgrVLVHC~aGvSRSaTVVIAYLM~~~-----gmSleeAl~~VRs~RP~i~PN 248 (803)
.|...++-...|.+.++.+++... .+++|+|||.+|+|||+++++++++... ..++.+|+..||+.|+.+-.+
T Consensus 139 ~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~ 218 (231)
T cd00047 139 PDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQT 218 (231)
T ss_pred CCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCC
Confidence 344433333334444444444432 3689999999999999999999977553 689999999999999988777
Q ss_pred hhhHHHHH
Q 003688 249 MGFACQLL 256 (803)
Q Consensus 249 ~gF~~QL~ 256 (803)
..+...+.
T Consensus 219 ~~Qy~f~~ 226 (231)
T cd00047 219 EEQYIFLY 226 (231)
T ss_pred HHHHHHHH
Confidence 66655553
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.37 E-value=1.3e-06 Score=91.80 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=58.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccCh
Q 003688 176 QDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNM 249 (803)
Q Consensus 176 ~D~~~~dL~~~L~eai~fI~eal~~-GgrVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~ 249 (803)
.|...+.-...+.+.+..++..... +++|+|||.+|+|||+++++++++.. ...++.+++..||..|+.+-.+.
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 3444442223344444444444332 78999999999999999999987743 46899999999999999988887
Q ss_pred hhHHHHH
Q 003688 250 GFACQLL 256 (803)
Q Consensus 250 gF~~QL~ 256 (803)
.++.-+.
T Consensus 247 ~Qy~f~~ 253 (258)
T smart00194 247 EQYIFLY 253 (258)
T ss_pred HHHHHHH
Confidence 7666554
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.12 E-value=1.4e-05 Score=78.96 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=55.4
Q ss_pred ccC-CeEECChhh---hCCHHHHHHCCCcEEEEcccCC----CCCccCCCcEEEEEEccCCCCCc---hH----------
Q 003688 126 IAD-HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---IT---------- 184 (803)
Q Consensus 126 I~p-~LYLGs~~~---A~d~e~Lk~~GIt~VLNLa~e~----~pe~~~~~i~yl~IpI~D~~~~d---L~---------- 184 (803)
|-+ .||-++... ..+.+.|.++||+.||+|.... .|.....++.++++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 444 588887544 4577899999999999996422 14445568999999997554431 11
Q ss_pred HHHH------------HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003688 185 SILY------------DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (803)
Q Consensus 185 ~~L~------------eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~ 236 (803)
..+. ...++++-..+..++|||||.+|..|++.+++-.| ...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 0011 11112222333457999999999999977655554 555998877664
No 32
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=3.5e-05 Score=73.31 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=78.2
Q ss_pred cceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHH
Q 003688 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDV 190 (803)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~----pe~-------~~~~i~yl~IpI~D~~~~dL~~~L~ea 190 (803)
.+-+|.+.|+|+++....|...++.+|++.|||.....+ |.. -..++.|.+||+.-..... .++
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~-----~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE-----ADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH-----HHH
Confidence 467899999999999999999999999999999754221 111 1247899999996432211 112
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 003688 191 FDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (803)
Q Consensus 191 i~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~ 241 (803)
-.|-+..-+.+++||.||+.|- ||-++=.--. ...||+.+++.++-+++
T Consensus 77 ~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 77 EAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 2233333456799999999996 7755422222 45699999988876553
No 33
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.06 E-value=1.7e-05 Score=90.85 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=66.1
Q ss_pred EccCCCCCchHHHHHHHHHHHHHHHhcC---------CeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHhcC
Q 003688 174 WLQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARG 243 (803)
Q Consensus 174 pI~D~~~~dL~~~L~eai~fI~eal~~G---------grVLVHC~aGvSRSaTVVIAYLM~~~-gmSleeAl~~VRs~RP 243 (803)
.++|+..++-...|.+.++.+......+ ...+|||.+|+|||++++++|+|+.. ..++++.+.-+|.-|+
T Consensus 430 nWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRn 509 (535)
T PRK15375 430 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRN 509 (535)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCC
Confidence 3467655443333555555555443221 23479999999999999999999754 4789999999999999
Q ss_pred c-cccChhhHHHHHHHHHHhc
Q 003688 244 V-TNPNMGFACQLLLCQKRVH 263 (803)
Q Consensus 244 ~-i~PN~gF~~QL~~~EkkL~ 263 (803)
. +--+..++..|.+.+..+.
T Consensus 510 g~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 510 NRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred ccccccHHHHHHHHHHHHHHh
Confidence 7 7788888889988887663
No 34
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.02 E-value=5.5e-06 Score=95.90 Aligned_cols=99 Identities=16% Similarity=0.343 Sum_probs=77.9
Q ss_pred CccccceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHH--hhcC
Q 003688 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRY--EKAQ 346 (803)
Q Consensus 269 p~s~~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~--e~~~ 346 (803)
|-....|.+|+|....+++ .|+|..++||++|||||..+..+|.|.|.-++..|+.+|.+++..|+.. ++..
T Consensus 220 Pyk~vMLlqVkGr~hVqtR------LVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRHVQTR------LVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEcccccceeE------EechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 3344568899997544443 6688999999999999999999999999999999999999999888855 3555
Q ss_pred C-cEEEecCCCC----hhhHHHhcCCCCCCCC
Q 003688 347 G-QITSIKEGEE----PLEFWDALVRGQFFAD 373 (803)
Q Consensus 347 ~-~I~vV~EG~E----peeFW~aLGgk~~y~~ 373 (803)
+ .|+.|.+-.- ...||+.|||...|+.
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~ 325 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQS 325 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhh
Confidence 4 3455555321 3579999999988876
No 35
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.01 E-value=2.7e-05 Score=88.69 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=96.5
Q ss_pred ccccceeccCCeEECChhhhCCHHHHHHC--------------CCcEEEEcccCCCCCccCCC--cEEEEEEccCCCCCc
Q 003688 119 FDKECSRIADHIYLGSDAVAKNRGILRQN--------------GITHVLNCVGFVCPEYFKGD--LVYKTLWLQDSPSED 182 (803)
Q Consensus 119 ~~~~iSeI~p~LYLGs~~~A~d~e~Lk~~--------------GIt~VLNLa~e~~pe~~~~~--i~yl~IpI~D~~~~d 182 (803)
++-+++-|+.+|..-++++..... +-++ |==.|.||+++. .|-... -....+++.|...+.
T Consensus 11 ~DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~f~g~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSRFHGRVARFGFDDHNPPP 87 (434)
T ss_pred ccccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccc--cCCccccccceeecCCCCCCCCc
Confidence 345566677777666665553222 2222 223366776422 122222 244568888988888
Q ss_pred hHHHHHHHHHHHHHHHhc--CCeEEEEcCCCCchHHHHHHHHHHhhcCCC-HHHHHHHHHHhc---C--ccccChhhHHH
Q 003688 183 ITSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR---G--VTNPNMGFACQ 254 (803)
Q Consensus 183 L~~~L~eai~fI~eal~~--GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS-leeAl~~VRs~R---P--~i~PN~gF~~Q 254 (803)
+ ..+..+++-++..+.+ ..-|.|||++|.+|++++++||||+..-.. +++|+++.-.+| . ...--+.+.+.
T Consensus 88 L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RY 166 (434)
T KOG2283|consen 88 L-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRY 166 (434)
T ss_pred H-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHH
Confidence 7 6677888888888764 468899999999999999999999997655 999999999999 3 12334566777
Q ss_pred HHHHHHHhccC
Q 003688 255 LLLCQKRVHAM 265 (803)
Q Consensus 255 L~~~EkkL~~~ 265 (803)
+..|+..+...
T Consensus 167 v~Y~~~~l~~~ 177 (434)
T KOG2283|consen 167 VGYFSRVLLNG 177 (434)
T ss_pred HHHHHHHhhcC
Confidence 77777644333
No 36
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.98 E-value=4.4e-05 Score=80.05 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=88.7
Q ss_pred cccceeccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCC------CCCch-HHHH
Q 003688 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDS------PSEDI-TSIL 187 (803)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe----~~-~~~i~yl~IpI~D~------~~~dL-~~~L 187 (803)
+.+.+-+.+.||-++++...+..+|+.++++.||.++.+..|+ ++ ..+|.+.+|.|.-. +..++ ...+
T Consensus 57 PlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i 136 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSI 136 (249)
T ss_pred CccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHH
Confidence 3445678889999999999999999999999999998765443 22 34789999998633 23333 3335
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 003688 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (803)
Q Consensus 188 ~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~ 241 (803)
..+++++- .+.+.++||||..|..|+++||.+.- +.++|++.-.++.-+..
T Consensus 137 ~~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 137 RKALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 56666633 24568999999999999999877754 77899988877754443
No 37
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.92 E-value=6.7e-05 Score=85.94 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=99.1
Q ss_pred eccCCeEECChhhhCCH----HHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCC--CCCchHHHHHHHHHHHHHH
Q 003688 125 RIADHIYLGSDAVAKNR----GILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDS--PSEDITSILYDVFDYFEDV 197 (803)
Q Consensus 125 eI~p~LYLGs~~~A~d~----e~Lk~~GIt~VLNLa~e~~p-e~~~~~i~yl~IpI~D~--~~~dL~~~L~eai~fI~ea 197 (803)
.+..+||+|........ .......+..||+|.+.... ........++++++... ...++...|.+++.|+...
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~ 370 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSH 370 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 45779999987652111 11234578899998754432 34456778899998744 3346888999999999999
Q ss_pred Hhc--CCeEEEEcCCCCchHHHHHHHHHHhhcCCC----------------HHHHHHHHHHhcCccccChhhHHHHHHH
Q 003688 198 REQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS----------------FEDAFQYVKAARGVTNPNMGFACQLLLC 258 (803)
Q Consensus 198 l~~--GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS----------------leeAl~~VRs~RP~i~PN~gF~~QL~~~ 258 (803)
+.+ +++|||||..|...|++|++|.|++.++.. ..+-+..|.+.+|.++|..+.+++...|
T Consensus 371 L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 371 LSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred hcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 888 999999999999999999999999986532 2234566666778888888887777554
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.80 E-value=8.9e-05 Score=75.42 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccChhhHHHHH
Q 003688 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (803)
Q Consensus 188 ~eai~fI~eal~----~GgrVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~gF~~QL~ 256 (803)
..++++++...+ .+++|+|||..|+|||++++++.+|.. ...++.+++..||+.|+.+-.+..++..+.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 344455554443 459999999999999999999987754 247999999999999999888877665554
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.63 E-value=0.0001 Score=72.59 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=44.4
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHh
Q 003688 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (803)
Q Consensus 165 ~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~ 225 (803)
..++.|++||+.|...+.- ..|+..++++... .++..+.+||.+|.||+.+.++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDP-EDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---H-HHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCH-HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999876654 6789999999888 678999999999999999988888764
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.55 E-value=0.00038 Score=75.92 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccChhhH
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFA 252 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~gF~ 252 (803)
.++|+|||.+|+||||++++...+.. ...+..+++..+|+.|+.+-.+..+.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 37999999999999999988875543 24678899999999999876665443
No 41
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.52 E-value=0.00021 Score=80.17 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=69.6
Q ss_pred CCCcEEEEEEccC---CCCCchHHH-HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003688 165 KGDLVYKTLWLQD---SPSEDITSI-LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (803)
Q Consensus 165 ~~~i~yl~IpI~D---~~~~dL~~~-L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs 240 (803)
..++.|+.+...- .+....... ...+-+|+++....++=|+|||.+|++|++-++++|||...+|+..+|++.+..
T Consensus 84 ~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 84 ERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred ccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 4456666655432 222222233 344445667777788999999999999999999999999999999999999999
Q ss_pred hcCccccChhhHHHHHHHHH
Q 003688 241 ARGVTNPNMGFACQLLLCQK 260 (803)
Q Consensus 241 ~RP~i~PN~gF~~QL~~~Ek 260 (803)
.|+...-....+..|...+.
T Consensus 164 ~r~~gi~k~dyi~~L~~~~~ 183 (393)
T KOG2386|consen 164 ARPPGIEKQDYIDALYSRYH 183 (393)
T ss_pred hCCCccCchHHHHHHhhccc
Confidence 99865555555666654443
No 42
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.50 E-value=0.0004 Score=76.08 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=44.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccChhhHHHH
Q 003688 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (803)
Q Consensus 202 grVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~gF~~QL 255 (803)
++|+|||.+|+||||++++.-++.. ...+..+++..+|..|+.+-.+..+..-+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 6999999999999999998865432 46789999999999999887776554444
No 43
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.45 E-value=0.00054 Score=75.51 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHhcCccccChhhHHHH
Q 003688 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (803)
Q Consensus 202 grVLVHC~aGvSRSaTVVIAYLM~-----~~gmSleeAl~~VRs~RP~i~PN~gF~~QL 255 (803)
++|+|||.+|+||||++|+...+. ....+..+++..+|..|+.+-.+..+..-+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~ 306 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFC 306 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHH
Confidence 799999999999999998875443 246889999999999999877776544433
No 44
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.39 E-value=0.0008 Score=73.45 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccChhhH
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFA 252 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~gF~ 252 (803)
.++|+|||.+|+||||++++...+.. ...++.+++..+|+.|+..-.+..+.
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY 277 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDY 277 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHH
Confidence 47999999999999999988765542 35789999999999999776665433
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.31 E-value=0.00032 Score=74.65 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCeEECChhhhCCHH--HHHHCCCcEEEEcccCC--CCCccCCCc----EEEEEEccCCCCC-chHHHHHHHHHHHHHHH
Q 003688 128 DHIYLGSDAVAKNRG--ILRQNGITHVLNCVGFV--CPEYFKGDL----VYKTLWLQDSPSE-DITSILYDVFDYFEDVR 198 (803)
Q Consensus 128 p~LYLGs~~~A~d~e--~Lk~~GIt~VLNLa~e~--~pe~~~~~i----~yl~IpI~D~~~~-dL~~~L~eai~fI~eal 198 (803)
..+|.++.+...+.. .....+|..++++.++. .-..+.... ....+...+.... +-....+....++.-.+
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 132 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLA 132 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHh
Confidence 356777777666555 67777888888875411 111111111 1111222221111 11122344455555555
Q ss_pred hcC-CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccccCh
Q 003688 199 EQG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (803)
Q Consensus 199 ~~G-grVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~PN~ 249 (803)
.++ ++||+||.+|..|++.+++.|++...+..-..+-++++..++......
T Consensus 133 ~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 133 DAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 554 999999999999999999999999988877788888888877654444
No 46
>PHA02738 hypothetical protein; Provisional
Probab=97.29 E-value=0.0011 Score=73.14 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHhcCccccChhhHHH
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~-----~gmSleeAl~~VRs~RP~i~PN~gF~~Q 254 (803)
.++|+|||.+|+||||++++.-++.. ...+..+++..||..|+..-.+..+..-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 36899999999999999877654332 3578999999999999987666655543
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.0032 Score=77.17 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHH----HHhh-cCCCHHHHHHHHHHhcCccccC
Q 003688 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAY----LMWR-EGQSFEDAFQYVKAARGVTNPN 248 (803)
Q Consensus 175 I~D~~~~dL~~~L~eai~fI~eal~~-GgrVLVHC~aGvSRSaTVVIAY----LM~~-~gmSleeAl~~VRs~RP~i~PN 248 (803)
+.|...++-...|-+.++.|..+++. +-+|+|||.+|+|||++++++= |+.. .....-+.++.+|..|..+-++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 34665555556666666666666666 6699999999999999987654 3333 3577789999999999888777
Q ss_pred hhhHHH
Q 003688 249 MGFACQ 254 (803)
Q Consensus 249 ~gF~~Q 254 (803)
..+++.
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 665443
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.50 E-value=0.0068 Score=65.01 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=49.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHH---hcCCeEEEEcCCCCchHHHHHHHHH-HhhcC----------CC---HHHHHHH
Q 003688 175 LQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAYL-MWREG----------QS---FEDAFQY 237 (803)
Q Consensus 175 I~D~~~~dL~~~L~eai~fI~eal---~~GgrVLVHC~aGvSRSaTVVIAYL-M~~~g----------mS---leeAl~~ 237 (803)
..|...+++. +..++++-.. -++++++|||.||+||+|++++.-. +.... ++ ..+.+..
T Consensus 193 W~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 4577766653 3555655554 2579999999999999999987754 43322 11 2344555
Q ss_pred HHHhcCccccChhhHHHHH
Q 003688 238 VKAARGVTNPNMGFACQLL 256 (803)
Q Consensus 238 VRs~RP~i~PN~gF~~QL~ 256 (803)
+|+.|-.+--|..++..|.
T Consensus 269 LRsQRmkmVQn~~Qf~flY 287 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFLY 287 (302)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 6666666555655555444
No 49
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.10 E-value=0.017 Score=64.63 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=40.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH-HHhh--c---CCCHHHHHHHHHHhcCccccChhhHHH
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAY-LMWR--E---GQSFEDAFQYVKAARGVTNPNMGFACQ 254 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAY-LM~~--~---gmSleeAl~~VRs~RP~i~PN~gF~~Q 254 (803)
..+++.|||.+|+||++++++.. .|.. . .....+.+..+|..|+.+..+..+..-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f 358 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLF 358 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHH
Confidence 46899999999999999999655 2222 1 245888888899999877666555433
No 50
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.09 E-value=0.0081 Score=68.03 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=64.9
Q ss_pred HHHHHHCCCcEEEEcccCCCCCcc---------------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH------Hh
Q 003688 141 RGILRQNGITHVLNCVGFVCPEYF---------------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV------RE 199 (803)
Q Consensus 141 ~e~Lk~~GIt~VLNLa~e~~pe~~---------------~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~ea------l~ 199 (803)
...++..|+-+|-|+.+.....|. ..-+.|+.+-..|++.+.- -..++.|+++. +-
T Consensus 373 e~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~d---Pg~vLnFLe~V~~rq~~l~ 449 (600)
T KOG0790|consen 373 EGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSD---PGGVLNFLEEVNHRQESLM 449 (600)
T ss_pred ccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCC---ccHHHHHHHHhhhhhcccc
Confidence 345667777777765432111111 0123555566666654321 12344555543 33
Q ss_pred cCCeEEEEcCCCCchHHHHHHH-HHHh---hc----CCCHHHHHHHHHHhcCccccChhhH
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIA-YLMW---RE----GQSFEDAFQYVKAARGVTNPNMGFA 252 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIA-YLM~---~~----gmSleeAl~~VRs~RP~i~PN~gF~ 252 (803)
+.++|.|||.|||||++++++- .||- .. .++....+++||+.|..+.-.+.+.
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQY 510 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQY 510 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhH
Confidence 4579999999999999987543 3432 22 4688899999999998664444433
No 51
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=95.50 E-value=0.04 Score=68.36 Aligned_cols=42 Identities=40% Similarity=0.643 Sum_probs=17.0
Q ss_pred CCCCccCCCCCCCCCCCCCC-CCcccCCCCCCCCCCCCCCCCC
Q 003688 523 SSPQLSSKSPTLSPSTSDYS-SSFTFSPSSCNWSDLSRQPSPS 564 (803)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 564 (803)
.||.|+-.||+-||++.+|+ +|-..||+|.++|..|-+=||+
T Consensus 1532 tspsysptspsysptspsysptspsysptsp~ysptspsyspt 1574 (1605)
T KOG0260|consen 1532 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1574 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33344444444444333332 2333445555555544333333
No 52
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.04 E-value=0.076 Score=59.36 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh-hcC----CCHHHHHHHHHHhcCccccChhhHHHHHHHHHHh
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMW-REG----QSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~-~~g----mSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL 262 (803)
.++++|||.+|+||++|+++.--+. ..+ .+.-..+-.+|..|+...++..++--|.++-...
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 6899999999999999997765333 322 3445566677888899999998888887665443
No 53
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.098 Score=63.59 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=38.6
Q ss_pred cceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003688 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (803)
Q Consensus 273 ~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~e 328 (803)
+||+-+..-...+....+-..-+.++...|+.++||+|++|.++|+|+|+.++...
T Consensus 859 Prl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~l 914 (1007)
T KOG1984|consen 859 PRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDL 914 (1007)
T ss_pred cceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHH
Confidence 45555544332333211222245677899999999999999999999999998754
No 54
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.20 E-value=0.2 Score=49.62 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=55.8
Q ss_pred eccCCeEECChhhhCCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc---C
Q 003688 125 RIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---G 201 (803)
Q Consensus 125 eI~p~LYLGs~~~A~d~e~Lk~~GIt~VLNLa~e~~pe~~~~~i~yl~IpI~D~~~~dL~~~L~eai~fI~eal~~---G 201 (803)
-|.++||.+..... .+...=+|-+++-++ +.|..+ -.|.+.-++ .++.+-+..+++.++. .
T Consensus 3 ~i~drLyf~~~~~~-----p~~~~~~~yF~iD~~---------l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 3 IIPDRLYFASLRNK-----PKSTPNTHYFSIDDE---------LVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp -SSSSEEEEE-SS---------BTTEEEEE-TTT---------S----S-SS------H-HHHHHHHHHHHHHHH-GGGT
T ss_pred CCCCcEEEEEeCCC-----CCCCCCcEEEEeCCe---------EEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhc
Confidence 35678888876542 233344555554221 223222 246666676 4566666777777665 6
Q ss_pred CeEEEEcCCCCc--h--HHHHHHHHHHhhcCCCHHHHHHHHHHhc
Q 003688 202 GRVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (803)
Q Consensus 202 grVLVHC~aGvS--R--SaTVVIAYLM~~~gmSleeAl~~VRs~R 242 (803)
++.+|||...-. | ++.++.||+|...||+.++|++.+...-
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 888889877544 3 4788899999999999999999998764
No 55
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=94.07 E-value=0.3 Score=61.13 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.7
Q ss_pred CCcccCCCCCC
Q 003688 65 RPVEQWPRAGS 75 (803)
Q Consensus 65 ~~~~~~p~~~s 75 (803)
|+-+-|++++-
T Consensus 772 rIpFGF~~Rtl 782 (1605)
T KOG0260|consen 772 RIPFGFPKRTL 782 (1605)
T ss_pred ccccCCCcccc
Confidence 34444444443
No 56
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=89.86 E-value=0.73 Score=55.84 Aligned_cols=32 Identities=16% Similarity=0.524 Sum_probs=28.4
Q ss_pred ccccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003688 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (803)
Q Consensus 297 ~s~sSLnSrDcFILdtps~IYVWiGk~ss~~e 328 (803)
...+.|+++++|+|+++.+||+|+|+.|....
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p~L 769 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVPSL 769 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCHHH
Confidence 45577899999999999999999999999744
No 57
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=89.67 E-value=0.28 Score=41.88 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=28.1
Q ss_pred cccccccccccCCceEEEEEccCCCCCCCceEEEEecCce
Q 003688 719 SKVESSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWGV 758 (803)
Q Consensus 719 ~k~~~~~~~~ldsksv~i~~~p~~~~~~~~~lyiwvg~~~ 758 (803)
.+.-.++.+.|++..+||+-... .||+|+|+.-
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~-------~i~vW~G~~~ 37 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGY-------EIFVWVGKKS 37 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESS-------EEEEEEHTTS
T ss_pred CCcCCCCHHHcCCCCEEEEEeCC-------CcEEEEeccC
Confidence 45566888999999999998876 7999999983
No 58
>PTZ00395 Sec24-related protein; Provisional
Probab=89.12 E-value=1.3 Score=56.66 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.5
Q ss_pred cCCccccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003688 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (803)
Q Consensus 294 ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~e 328 (803)
.+..+...|.++++|||+.|..||+|+|+.++...
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 44567788999999999999999999999998643
No 59
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.75 E-value=0.79 Score=57.52 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhc----CCeEEEEcCCCCchHHHHHHH-----HHHhhcCCCHHHHHHHHHHhcCcc
Q 003688 188 YDVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIA-----YLMWREGQSFEDAFQYVKAARGVT 245 (803)
Q Consensus 188 ~eai~fI~eal~~----GgrVLVHC~aGvSRSaTVVIA-----YLM~~~gmSleeAl~~VRs~RP~i 245 (803)
-..+.|+.+...- .|+++|||.+|+||+|+.++- .++.....+.-+-+..+|..|...
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 3466777776653 499999999999999986532 233333445555555666666543
No 60
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.01 E-value=1.7 Score=52.41 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=44.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh----h--cCCCHHHHHHHHHHhcCcc-ccChhhHHHHHHHHHHh
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMW----R--EGQSFEDAFQYVKAARGVT-NPNMGFACQLLLCQKRV 262 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~----~--~gmSleeAl~~VRs~RP~i-~PN~gF~~QL~~~EkkL 262 (803)
..+|+|||..|-||+++-++-=|+. + ...+....++++|..||.+ .-...|.-.|...-.+.
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEV 995 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEV 995 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHH
Confidence 4699999999999999865443322 2 2467778899999999954 55667777776555443
No 61
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=85.81 E-value=0.66 Score=41.26 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=25.4
Q ss_pred cccccccCCceEEEEEccCCCCCCCceEEEEecCcee
Q 003688 723 SSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWGVK 759 (803)
Q Consensus 723 ~~~~~~ldsksv~i~~~p~~~~~~~~~lyiwvg~~~~ 759 (803)
.+..++|||+.+||+-.+ ..||+|+|+.-+
T Consensus 17 ~~~~~~L~s~d~fild~~-------~~iyvW~G~~as 46 (90)
T smart00262 17 PFSQGSLNSGDCYILDTG-------SEIYVWVGKKSS 46 (90)
T ss_pred CCCHHHCCCCCEEEEECC-------CEEEEEECCCCC
Confidence 466789999999999875 469999999864
No 62
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.52 E-value=2.4 Score=50.31 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHH-HHH
Q 003688 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIA-YLM 224 (803)
Q Consensus 187 L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIA-YLM 224 (803)
|..|+...++.-..+..|||||..|-.|++-+++. -||
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 45555556666667899999999999999887654 444
No 63
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=3.9 Score=50.21 Aligned_cols=31 Identities=19% Similarity=0.550 Sum_probs=28.1
Q ss_pred CccccCCCCCCeEEEecCCceEEEecCCCCh
Q 003688 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (803)
Q Consensus 296 ~~s~sSLnSrDcFILdtps~IYVWiGk~ss~ 326 (803)
...+..|.+++.|++|++..+|+|+|+.|..
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 3466888999999999999999999999997
No 64
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=77.08 E-value=3.6 Score=52.03 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHhcCcc
Q 003688 201 GGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVT 245 (803)
Q Consensus 201 GgrVLVHC~aGvSRSaTVVIAYLM~~~-----gmSleeAl~~VRs~RP~i 245 (803)
.+++.|||..|.+|+++++++-++..+ -++.=+|++.+|..||.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 589999999999999988877655431 245557777777777765
No 65
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.41 E-value=15 Score=33.01 Aligned_cols=29 Identities=31% Similarity=0.506 Sum_probs=19.3
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 199 ~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
.++++|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4678999999988 488543 3344 444553
No 66
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=65.36 E-value=13 Score=41.98 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=16.8
Q ss_pred hcCCeEEEEcCCCCchHHHHHH
Q 003688 199 EQGGRVFVHCCQGVSRSTSLVI 220 (803)
Q Consensus 199 ~~GgrVLVHC~aGvSRSaTVVI 220 (803)
.+|..|||||..|..|++-|+.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 6889999999999999965543
No 67
>PLN00162 transport protein sec23; Provisional
Probab=61.53 E-value=23 Score=44.05 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCccccCCCCCCeEEEecCCceEEEecCCC------Chhh----------hHHHHHHHHHHHHHhhcCCcEEEecCCCCh
Q 003688 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNC------SVMM----------SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (803)
Q Consensus 295 v~~s~sSLnSrDcFILdtps~IYVWiGk~s------s~~e----------r~~a~~~A~~I~~~e~~~~~I~vV~EG~Ep 358 (803)
+.....+|.+..+|+||++..|+||+|... .-.+ .+..+.-|+.|.+.--+...+.++++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 345678899999999999999999999421 1110 111222233333322223357889999888
Q ss_pred hhHHHh
Q 003688 359 LEFWDA 364 (803)
Q Consensus 359 eeFW~a 364 (803)
..|..+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 888654
No 68
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=56.30 E-value=17 Score=43.64 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.2
Q ss_pred HHHHHHHh-cCCeEEEEcCCCCchHHHHHH
Q 003688 192 DYFEDVRE-QGGRVFVHCCQGVSRSTSLVI 220 (803)
Q Consensus 192 ~fI~eal~-~GgrVLVHC~aGvSRSaTVVI 220 (803)
.+|.+++. +|-.|||||..|..|+.-|+.
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 34555666 669999999999999966653
No 69
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=50.20 E-value=32 Score=30.75 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=38.7
Q ss_pred HHHHCCCcEEEEcccCCCCCccCC-CcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 003688 143 ILRQNGITHVLNCVGFVCPEYFKG-DLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (803)
Q Consensus 143 ~Lk~~GIt~VLNLa~e~~pe~~~~-~i~-yl~IpI~D~~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVI 220 (803)
.+...+-..||++... .++... -.. ..++|+.+...... ... ..+.++++|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3444556778887543 222221 123 56677665433211 000 667899999999998 77 4455
Q ss_pred HHHHhh
Q 003688 221 AYLMWR 226 (803)
Q Consensus 221 AYLM~~ 226 (803)
.+|...
T Consensus 79 ~~L~~~ 84 (110)
T COG0607 79 AALKLA 84 (110)
T ss_pred HHHHHc
Confidence 555544
No 70
>PLN02160 thiosulfate sulfurtransferase
Probab=45.25 E-value=30 Score=33.56 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.0
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
+..+++|+|||..|. ||... +.++...|.+
T Consensus 78 ~~~~~~IivyC~sG~-RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHH--HHHHHHcCCC
Confidence 456789999999994 88654 3333444554
No 71
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=44.92 E-value=40 Score=30.76 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
.+.+|+|||..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 4679999999997 7733 33334 44465
No 72
>PRK01415 hypothetical protein; Validated
Probab=42.02 E-value=47 Score=36.00 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.1
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
+.++++|+++|..|+ || ..++++|.. +|.
T Consensus 168 ~~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf 196 (247)
T PRK01415 168 LLKGKKIAMVCTGGI-RC-EKSTSLLKS-IGY 196 (247)
T ss_pred hcCCCeEEEECCCCh-HH-HHHHHHHHH-cCC
Confidence 356789999999996 77 445566543 354
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=39.06 E-value=27 Score=28.71 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.6
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHH
Q 003688 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (803)
Q Consensus 205 LVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~V 238 (803)
..||.+ -++.+- +|.++|+.+|+++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 58889999999999999875
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=38.17 E-value=49 Score=30.57 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=20.7
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
+..+.+|+|+|..| ++.++.++.+|. ..|++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 34578999999998 556666555554 44544
No 75
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=36.90 E-value=1.1e+02 Score=26.95 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=41.7
Q ss_pred HCCCcEEEEcccCCCCCccCCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH-
Q 003688 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (803)
Q Consensus 146 ~~GIt~VLNLa~e~~pe~~~~~i-~yl~IpI~D~---~~~dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVI- 220 (803)
..+=..||+|.... ++....+ .-.++++... ........+............++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44556788875321 1212222 2367777432 2222333344444444444567789999996666 4433333
Q ss_pred --HHHHhhcCCC
Q 003688 221 --AYLMWREGQS 230 (803)
Q Consensus 221 --AYLM~~~gmS 230 (803)
+|++...|++
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3445544553
No 76
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=34.96 E-value=56 Score=36.43 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
++++|+|||..|+ ||. .+++||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 5689999999997 774 45566654 4543
No 77
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=34.69 E-value=47 Score=36.75 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.4
Q ss_pred eEEEEcCCCCchHHHHHHH
Q 003688 203 RVFVHCCQGVSRSTSLVIA 221 (803)
Q Consensus 203 rVLVHC~aGvSRSaTVVIA 221 (803)
.|-|-|++|..||++++=+
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 7889999999999988643
No 78
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=32.75 E-value=61 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHh
Q 003688 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (803)
Q Consensus 216 aTVVIAYLM~~~gmSleeAl~~VRs~ 241 (803)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45577889999999999999999875
No 79
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.16 E-value=89 Score=27.96 Aligned_cols=28 Identities=29% Similarity=0.601 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
++++|+|+|..| .||... +.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 478999999998 477443 33343 34553
No 80
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.93 E-value=96 Score=32.35 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHH
Q 003688 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (803)
Q Consensus 183 L~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM 224 (803)
+.+.+.++++.|.+++.++++|++. |.|+|++++..+-+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 3456888899999999999999987 88889876655433
No 81
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=30.81 E-value=4.6e+02 Score=29.82 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCCCeEEEecCC------ceEEEecCCCChhhhHHHHHHHHHHHHHhhcCCcEEEecCCCC------hhhHHHhcC
Q 003688 302 FDTRGAFIVLVPS------AIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQITSIKEGEE------PLEFWDALV 366 (803)
Q Consensus 302 LnSrDcFILdtps------~IYVWiGk~ss~~er~~a~~~A~~I~~~e~~~~~I~vV~EG~E------peeFW~aLG 366 (803)
|...+.-|||... ..|.++|- .....+.-+-.++..+.+... ..+|.+-.|+.- |+.||+++-
T Consensus 161 L~~~~~~vlDlE~~aehrGS~fG~~~~-~qpsQ~~Fe~~l~~~l~~~~~-~~~i~vE~Es~~IG~~~lP~~l~~~m~ 235 (345)
T PRK11784 161 LANAGAQVLDLEGLANHRGSSFGRLGG-PQPSQKDFENLLAEALLKLDP-ARPIVVEDESRRIGRVHLPEALYEAMQ 235 (345)
T ss_pred HHhcCCeEEECCchhhhccccccCCCC-CCcchHHHHHHHHHHHHcCCC-CCeEEEEeccccccCccCCHHHHHHHh
Confidence 3334556777542 56777777 334445555566666665444 345666666543 889999874
No 82
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.67 E-value=60 Score=28.94 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.5
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 199 ~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
..+++|+|||..|. ||.. ++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 46789999999995 7743 33333 44455
No 83
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.65 E-value=55 Score=36.07 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHH----HhcCC---eEEEEcCCCCchHHHHHHH
Q 003688 185 SILYDVFDYFEDV----REQGG---RVFVHCCQGVSRSTSLVIA 221 (803)
Q Consensus 185 ~~L~eai~fI~ea----l~~Gg---rVLVHC~aGvSRSaTVVIA 221 (803)
..+..+.++++.+ .++|+ .|-|-|++|..||++++-.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 3455555555543 33443 5889999999999988643
No 84
>PRK05320 rhodanese superfamily protein; Provisional
Probab=29.51 E-value=93 Score=33.72 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
++++|+++|..|+ ||. .++++|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~-~Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCE-KAAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHH-HHHHHHHH-cCC
Confidence 5789999999996 774 45566643 354
No 85
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=28.84 E-value=89 Score=31.34 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003688 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (803)
Q Consensus 199 ~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmS 230 (803)
.++.+|+|+|..|..||.. ++++++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999998878865 45555555543
No 86
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=26.91 E-value=59 Score=29.97 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=25.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcC
Q 003688 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (803)
Q Consensus 205 LVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP 243 (803)
.-||.+ -+..+ =+|.++|..+++++.+|++.+.+.-.
T Consensus 54 ~~~Cf~-Cg~~G-d~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGG-DVIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCC-cHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 688984 45555 45888999999999999999887543
No 87
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=26.30 E-value=80 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCC
Q 003688 185 SILYDVFDYFEDVREQGGRVFVHCCQ 210 (803)
Q Consensus 185 ~~L~eai~fI~eal~~GgrVLVHC~a 210 (803)
..+.-++..++++.++|.+|+|+|..
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34667999999999999999999953
No 88
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=26.14 E-value=92 Score=29.07 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.4
Q ss_pred HhcCCeEEEEcCCCCchHHHH
Q 003688 198 REQGGRVFVHCCQGVSRSTSL 218 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTV 218 (803)
.....+|+|+|..|. ||...
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~a 80 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAA 80 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHH
Confidence 356789999999984 77654
No 89
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=25.83 E-value=1.6e+02 Score=29.06 Aligned_cols=50 Identities=16% Similarity=0.522 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHhcCccc
Q 003688 182 DITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (803)
Q Consensus 182 dL~~~L~eai~fI~eal~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~~VRs~RP~i~ 246 (803)
++....+.+++|+++ ..++-|++-| +-|||.++| ++.+++++...|-.+-
T Consensus 59 ~L~~l~~~i~~fl~~--~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~~ 108 (136)
T PF05763_consen 59 NLHKLLDTIVRFLKE--NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYAL 108 (136)
T ss_pred hhHHHHHHHHHHHHh--CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHee
Confidence 344445555556655 3468999998 789999988 8899999998886543
No 90
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.52 E-value=1.1e+02 Score=28.92 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 198 l~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
+.++.+|+|+|..|-.||..+ +++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 456789999998554576543 366666665
No 91
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=2.1e+02 Score=30.52 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003688 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (803)
Q Consensus 179 ~~~dL~~~L~eai~fI~eal----~~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl~ 236 (803)
..+.+...+..+..|+++.+ .+|++|+|||++..-| |++|+..|.+.++...
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhh
Confidence 34566677888888887654 5789999999873333 4667777888655443
No 92
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=22.71 E-value=1.9e+02 Score=30.46 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 003688 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (803)
Q Consensus 179 ~~~dL~~~L~eai~fI~eal~----~GgrVLVHC~aGvSRSaTVVIAYLM~~~gmSleeAl 235 (803)
..+++......+..++++.+. .+++|||-|++|+-|. +++|++ |+++++..
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~~ 202 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDIM 202 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHHH
Confidence 346677777888888877542 4689999999999875 333433 67766543
No 93
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=22.40 E-value=1e+02 Score=31.06 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcC
Q 003688 188 YDVFDYFEDVREQGGRVFVHCC 209 (803)
Q Consensus 188 ~eai~fI~eal~~GgrVLVHC~ 209 (803)
..++.+++++...|.+|||+|.
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 3789999999999999999994
No 94
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.44 E-value=95 Score=30.39 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCC
Q 003688 187 LYDVFDYFEDVREQGGRVFVHCCQ 210 (803)
Q Consensus 187 L~eai~fI~eal~~GgrVLVHC~a 210 (803)
..-+++.++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 466889999999999999999953
No 95
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=21.42 E-value=1.1e+02 Score=30.85 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 003688 185 SILYDVFDYFEDVREQGGRVFVHCCQG 211 (803)
Q Consensus 185 ~~L~eai~fI~eal~~GgrVLVHC~aG 211 (803)
..+.-++++++++..+|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 446679999999999999999999543
No 96
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=21.42 E-value=54 Score=41.78 Aligned_cols=145 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcC--CeEEEEcCCCCchHHHHHHHH--HHhhcCCCHHHHHHHHHHhcCccccChhhHHHHHHHHHHh
Q 003688 187 LYDVFDYFEDVREQG--GRVFVHCCQGVSRSTSLVIAY--LMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (803)
Q Consensus 187 L~eai~fI~eal~~G--grVLVHC~aGvSRSaTVVIAY--LM~~~gmSleeAl~~VRs~RP~i~PN~gF~~QL~~~EkkL 262 (803)
++.|++-|.+..... |.||-|| +|+|.+--||.-. +|....+.+..|+ +|.|-.-...-..+|++-+
T Consensus 681 wd~~~eSlkr~~~~~GsGcILAHc-MGLGKTlQVvtflhTvL~c~klg~ktaL--------vV~PlNt~~NW~~EFekWm 751 (1567)
T KOG1015|consen 681 WDCCCESLKRTKKSPGSGCILAHC-MGLGKTLQVVTFLHTVLLCDKLGFKTAL--------VVCPLNTALNWMNEFEKWM 751 (1567)
T ss_pred HHHHHHHHHhhcCCCCcchHHHHh-hcccceehhhHHHHHHHHhhccCCceEE--------EEcchHHHHHHHHHHHHhc
Q ss_pred ccCCCCCccccceeeecCCCCCCCccccccccCCccccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHH
Q 003688 263 HAMPASPNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRY 342 (803)
Q Consensus 263 ~~~~asp~s~~RLYRV~g~S~~dp~~LVpK~ev~~s~sSLnSrDcFILdtps~IYVWiGk~ss~~er~~a~~~A~~I~~~ 342 (803)
.... .....++|-+........+.-..+.- .+.++||||-...-=-+=.|++-.. +.+++.+.++
T Consensus 752 ~~~e--~~~~leV~eL~~vkr~e~R~~~L~~W-------~~~ggVmIiGYdmyRnLa~gr~vk~------rk~ke~f~k~ 816 (1567)
T KOG1015|consen 752 EGLE--DDEKLEVSELATVKRPEERSYMLQRW-------QEDGGVMIIGYDMYRNLAQGRNVKS------RKLKEIFNKA 816 (1567)
T ss_pred cccc--ccccceeehhhhccChHHHHHHHHHH-------HhcCCEEEEehHHHHHHhcccchhh------hHHHHHHHHh
Q ss_pred h-hcCCcEEEecCC
Q 003688 343 E-KAQGQITSIKEG 355 (803)
Q Consensus 343 e-~~~~~I~vV~EG 355 (803)
. .++..++||+||
T Consensus 817 lvdpGPD~vVCDE~ 830 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEG 830 (1567)
T ss_pred ccCCCCCeEEecch
No 97
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=21.06 E-value=1.1e+02 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003688 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (803)
Q Consensus 200 ~GgrVLVHC~aGvSRSaTVVIAYLM~~~gm 229 (803)
++.+|+|+|..|. ||.. ++.+| +..|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 4679999999986 6643 33344 44455
No 98
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=20.20 E-value=1.6e+02 Score=32.63 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=17.4
Q ss_pred HhcCC---eEEEEcCCCCchHHHHH
Q 003688 198 REQGG---RVFVHCCQGVSRSTSLV 219 (803)
Q Consensus 198 l~~Gg---rVLVHC~aGvSRSaTVV 219 (803)
.++|+ .|-|=|++|..||++++
T Consensus 237 ~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 237 EKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HhcCCeEEEEEEccCCCccchHHHH
Confidence 34555 57789999999999885
Done!