BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003689
(802 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHL|A Chain A, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 453
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 497 EGIYFSAVIYKFTQGGYLPLAFSLVLMIIMATWHYVHRQRYVYELNNKVSSAHVRDLVSN 556
+ I+ +I F + PL L+ MII + R+ + E N ++S V L+SN
Sbjct: 85 KNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISN 144
Query: 557 P-NVNRIPGI 565
P V R GI
Sbjct: 145 PGEVERKKGI 154
>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type B-Derivative, Lc-B-Gs-Hn-B
Length = 906
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 497 EGIYFSAVIYKFTQGGYLPLAFSLVLMIIMATWHYVHRQRYVYELNNKVSSAHVRDLVSN 556
+ I+ +I F + PL L+ MII + R+ + E N ++S V L+SN
Sbjct: 85 KNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISN 144
Query: 557 P-NVNRIPGI 565
P V R GI
Sbjct: 145 PGEVERKKGI 154
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 497 EGIYFSAVIYKFTQGGYLPLAFSLVLMIIMATWHYVHRQRYVYELNNKVSSAHVRDLVSN 556
+ I+ +I F + PL L+ MII + R+ + E N ++S V L+SN
Sbjct: 84 KNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISN 143
Query: 557 P-NVNRIPGI 565
P V R GI
Sbjct: 144 PGEVERKKGI 153
>pdb|2ETF|A Chain A, Crystal Structure Of Full Length Botulinum Neurotoxin
(Type B) Light Chain
pdb|2ETF|B Chain B, Crystal Structure Of Full Length Botulinum Neurotoxin
(Type B) Light Chain
Length = 441
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 497 EGIYFSAVIYKFTQGGYLPLAFSLVLMIIMATWHYVHRQRYVYELNNKVSSAHVRDLVSN 556
+ I+ +I F + PL L+ MII + R+ + E N ++S V L+SN
Sbjct: 85 KNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISN 144
Query: 557 P-NVNRIPGI 565
P V R GI
Sbjct: 145 PGEVERKKGI 154
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 497 EGIYFSAVIYKFTQGGYLPLAFSLVLMIIMATWHYVHRQRYVYELNNKVSSAHVRDLVSN 556
+ I+ +I F + PL L+ MII + R+ + E N ++S V L+SN
Sbjct: 84 KNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISN 143
Query: 557 P-NVNRIPGI 565
P V R GI
Sbjct: 144 PGEVERKKGI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,437,489
Number of Sequences: 62578
Number of extensions: 852431
Number of successful extensions: 1778
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 25
length of query: 802
length of database: 14,973,337
effective HSP length: 107
effective length of query: 695
effective length of database: 8,277,491
effective search space: 5752856245
effective search space used: 5752856245
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)