Query 003689
Match_columns 802
No_of_seqs 217 out of 767
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 18:54:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003689.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1736-1740//hhsearch_pdb/003689hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 1.0 1 1 38.5 15.3 105 210-326 99-213 (444)
2 3l1l_A Arginine/agmatine antip 1.0 1 1 34.9 13.2 83 232-322 126-212 (445)
3 4djk_A Probable glutamate/gamm 1.0 1 1 34.4 19.1 101 231-338 130-240 (511)
4 2bm3_A Type 2 cohesin, scaffol 1.0 1 1 19.6 0.6 10 623-632 36-45 (166)
5 3hbe_X Class IV chitinase CHIA 1.0 1 1 16.1 -0.9 72 324-408 95-169 (204)
6 3n4p_A Terminase subunit UL89 1.0 1 1 16.1 -2.9 68 357-425 172-252 (279)
7 2cjl_A Chitinase G, secreted c 1.0 1 1 15.4 -1.3 43 326-376 91-138 (204)
8 2dkv_A Chitinase; whole struct 1.0 1 1 15.3 -1.3 43 326-376 167-214 (309)
9 1iwp_G Glycerol dehydratase ga 1.0 1 1 14.6 -4.5 22 775-796 69-90 (141)
10 1eex_G Propanediol dehydratase 1.0 1 1 14.4 -5.1 22 775-796 101-122 (173)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=38.49 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHCCC---CCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 465024555320133---46886--24146789999998774103332012---20449999999998655552003683
Q 003689 210 LTPCISVLSAVSGIN---SLGQN--AIVGISVAILIVLFAVQRLGTDKVGS---TFAPVIFLWFSFISGIGLYNLIKHDI 281 (802)
Q Consensus 210 lTPAISVLSAVeGl~---~~~~~--~Vv~Is~~ILv~LF~iQ~~GT~kVg~---~FaPIm~iWF~~i~~iGiyni~~~~p 281 (802)
++.|....+..+-+. +...+ +...+++++++.+..+.-+|+...++ .+..+.++=++.+...|+... +|
T Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~ 175 (444)
T 3gia_A 99 ISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HP 175 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CH
T ss_conf 999999999999999982888731789999999999999999983899999999999999999999999999975---82
Q ss_pred CEEEE-CCHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCHHCCCCCC
Q ss_conf 21010-4968899998763930-443242345522010000147898
Q 003689 282 GVLRA-FNPKYIVDYFRRNGKQ-GWISLGGIVLCITGTEAMFADLGH 326 (802)
Q Consensus 282 ~Vl~A-~nP~Y~i~ff~~~~~~-~~~~LG~VvLciTG~EALfADlGH 326 (802)
+-+.. ++|. +.. -+..+...+.+.+|-|+.-.--+.
T Consensus 176 ~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~~~~~e 213 (444)
T 3gia_A 176 SYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVITNASEH 213 (444)
T ss_dssp GGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHHTTGGG
T ss_pred HHCCCCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2158877875---------3578999999999999709999987987
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=34.88 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCEE-EECCHHHHHHHHHHCCCHHHHHH
Q ss_conf 1467899999987741033320122---0449999999998655552003683210-10496889999876393044324
Q 003689 232 VGISVAILIVLFAVQRLGTDKVGST---FAPVIFLWFSFISGIGLYNLIKHDIGVL-RAFNPKYIVDYFRRNGKQGWISL 307 (802)
Q Consensus 232 v~Is~~ILv~LF~iQ~~GT~kVg~~---FaPIm~iWF~~i~~iGiyni~~~~p~Vl-~A~nP~Y~i~ff~~~~~~~~~~L 307 (802)
..+++++++.+..+.-+|....++. +.++.++=++.+...|+. ..++..+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHCCCCCCCCCCC-----CHHHHHHHH
T ss_conf 9999999999999999563999999999999999999999999999---95715306656766775-----078999999
Q ss_pred HHHHHHHCCCCHHCC
Q ss_conf 234552201000014
Q 003689 308 GGIVLCITGTEAMFA 322 (802)
Q Consensus 308 G~VvLciTG~EALfA 322 (802)
..++.+.+|-|+.-.
T Consensus 198 ~~~~~af~G~e~~~~ 212 (445)
T 3l1l_A 198 NVTLWSFIGVESASV 212 (445)
T ss_dssp HHHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999974999999
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=34.36 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEE----EECCHHHHHHHHHHCCCH
Q ss_conf 414678999999877410333201220449----999999998655552003683210----104968899998763930
Q 003689 231 IVGISVAILIVLFAVQRLGTDKVGSTFAPV----IFLWFSFISGIGLYNLIKHDIGVL----RAFNPKYIVDYFRRNGKQ 302 (802)
Q Consensus 231 Vv~Is~~ILv~LF~iQ~~GT~kVg~~FaPI----m~iWF~~i~~iGiyni~~~~p~Vl----~A~nP~Y~i~ff~~~~~~ 302 (802)
...+++++++.+..+.-+|....++...-. +++-++.+..+|++.+...++.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------CCCH
T ss_conf 999999999999999981809999998999999999999999999999994698666667612258886-------6413
Q ss_pred HHHHHHHHHHHHCCCCHHCCCCCCCC--CCCEEHHHHH
Q ss_conf 44324234552201000014789887--6440001367
Q 003689 303 GWISLGGIVLCITGTEAMFADLGHFS--VRAIQISFSG 338 (802)
Q Consensus 303 ~~~~LG~VvLciTG~EALfADlGHF~--~~~Iqiaw~~ 338 (802)
.|..+..++.+.+|-|+.-.--+... +|.+..+-..
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999999932988888898642865430699999
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=1.00 E-value=1 Score=19.59 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.4
Q ss_pred CCEEEEEEEE
Q ss_conf 9779999996
Q 003689 623 HRMFRCVARY 632 (802)
Q Consensus 623 ~~~~r~v~ry 632 (802)
+.=|++-+.|
T Consensus 36 fAGYQvNIKY 45 (166)
T 2bm3_A 36 FAGFQVNIVY 45 (166)
T ss_dssp EEEEEEEEEC
T ss_pred CCCEEEEEEE
T ss_conf 2223798788
No 5
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=1.00 E-value=1 Score=16.14 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_conf 8988764400013676878899761130233202998756-6220134574337899999999999986776--626699
Q 003689 324 LGHFSVRAIQISFSGIVFPALLAAYSGQAAYLRKFPNHVD-DTFYKATPHALYWPQFVVAVAAAIIASQAMI--SGAFSI 400 (802)
Q Consensus 324 lGHF~~~~Iqiaw~~~V~P~LlL~Y~GQaA~Ll~~p~~~~-n~Fy~siP~~l~wP~fvlAtlAtIIASQA~I--Sg~FSi 400 (802)
-.++||.+||++|-.==-++ =.++|+ =|+.|||.+. ||-+.......||-.- - ....++ .+-|..
T Consensus 95 ~~Y~GRG~IQLTg~~NY~~~--g~~lg~--Dll~nPdlva~dp~~a~~sA~wfW~t~--~------~~~~~~~~~~gfg~ 162 (204)
T 3hbe_X 95 KSYHGRGPLQLSWNYNYGAA--GKSIGF--DGLNNPEKVGQDSTISFKTAVWFWMKN--S------NCHSAITSGQGFGG 162 (204)
T ss_dssp CCCCCBTTTTBCSHHHHHHH--HHHHTS--CTTTCGGGGGTCHHHHHHHHHHHHHHS--S------SHHHHHTTTCHHHH
T ss_pred CCCCCCCCEECCCHHHHHHH--HHHHCC--CCCCCHHHHHHCHHHHHHHHHHHHCCC--C------CHHHHHCCCCCHHH
T ss_conf 85647885343628899999--999588--613598998548799998787654257--8------77788614799889
Q ss_pred HHHHHHCC
Q ss_conf 99998679
Q 003689 401 VAQSLSLS 408 (802)
Q Consensus 401 i~Qai~Lg 408 (802)
+-+.|+ |
T Consensus 163 tt~~IN-G 169 (204)
T 3hbe_X 163 TIKAIN-S 169 (204)
T ss_dssp HHHHHH-G
T ss_pred HHHHHH-C
T ss_conf 999982-5
No 6
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=16.13 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHCCCCCCCEEEEC---CCCCC
Q ss_conf 299875662201345743378999999999--9998677662669--------9999986799975048735---98767
Q 003689 357 KFPNHVDDTFYKATPHALYWPQFVVAVAAA--IIASQAMISGAFS--------IVAQSLSLSCFPRVKVVHT---SAKYE 423 (802)
Q Consensus 357 ~~p~~~~n~Fy~siP~~l~wP~fvlAtlAt--IIASQA~ISg~FS--------ii~Qai~Lg~fPRvkIvHT---S~~~~ 423 (802)
++|..+.-|||.+-.+--.-.-..++-+-+ |.|||.++|-|-. ++.|.-++.|.|- .=.+| |.|..
T Consensus 172 ~d~~~v~~PfylL~~eK~~Afe~FI~~fNSG~i~ASQelVS~TIkLs~DPVeYL~eQi~ni~~~~~-~~~~t~~ysaK~~ 250 (279)
T 3n4p_A 172 PDQNHIEQPFYLMGRDKALAVEQFISRFNSGYIKASQELVSYTIKLSHDPIEYLLEQIQNLHRVTL-AEGTTARYSAKRQ 250 (279)
T ss_dssp EETTTEEESCBCCSTHHHHHHHHHHHHHHTTCEEEEEEEECSSSBTTBCHHHHHHHHHHTCCC-----------------
T ss_pred CCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHCEEEEC-CCEEEEEEECCCC
T ss_conf 798643087312064047999999998427753776666564577036819999999850378853-8806866433558
Q ss_pred CC
Q ss_conf 81
Q 003689 424 GQ 425 (802)
Q Consensus 424 GQ 425 (802)
|.
T Consensus 251 ~~ 252 (279)
T 3n4p_A 251 NR 252 (279)
T ss_dssp --
T ss_pred CC
T ss_conf 98
No 7
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor}
Probab=1.00 E-value=1 Score=15.37 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCCCCCEEHHHHHHHHHHHHHHHCCCHHH----HCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 88764400013676878899761130233----202998756-6220134574337
Q 003689 326 HFSVRAIQISFSGIVFPALLAAYSGQAAY----LRKFPNHVD-DTFYKATPHALYW 376 (802)
Q Consensus 326 HF~~~~Iqiaw~~~V~P~LlL~Y~GQaA~----Ll~~p~~~~-n~Fy~siP~~l~w 376 (802)
++||.+||++|-. ||---+.+ |+.|||-+. ||-+.......||
T Consensus 91 Y~GRG~iQLT~~~--------NY~~~g~~lg~dll~nPdlv~~dp~~a~~sA~wfW 138 (204)
T 2cjl_A 91 YYGRGPVQLSWNF--------NYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLWYW 138 (204)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH--------HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 0677708785787--------89999999396400499998518798898888876
No 8
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A*
Probab=1.00 E-value=1 Score=15.29 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCCCCEEHHHHHHHHHHHHHHHCCCHHH----HCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 88764400013676878899761130233----20299875-66220134574337
Q 003689 326 HFSVRAIQISFSGIVFPALLAAYSGQAAY----LRKFPNHV-DDTFYKATPHALYW 376 (802)
Q Consensus 326 HF~~~~Iqiaw~~~V~P~LlL~Y~GQaA~----Ll~~p~~~-~n~Fy~siP~~l~w 376 (802)
++||.+|||+|-. ||---+.+ |+.|||-+ .||-+..-..-.||
T Consensus 167 Y~GRG~IQLT~~~--------NY~~~g~~lg~DLl~nPdlVa~dp~~A~~sA~WFW 214 (309)
T 2dkv_A 167 YYGRGPIQLSFNF--------NYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFW 214 (309)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHH
T ss_pred EECCCCCCCCCHH--------HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHE
T ss_conf 4557841123326--------39999999498501498997318788887453320
No 9
>1iwp_G Glycerol dehydratase gamma subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: a.23.2.1 PDB: 1mmf_G*
Probab=1.00 E-value=1 Score=14.65 Aligned_cols=22 Identities=36% Similarity=0.782 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 9872239755534689997996
Q 003689 775 LRKNFREGDKTLAIPKSRLLKV 796 (802)
Q Consensus 775 LrkN~r~~~~~l~IP~~rlleV 796 (802)
+.+|+|++...-.||-+|++|+
T Consensus 69 ~a~NfrRAAELt~VPD~riLei 90 (141)
T 1iwp_G 69 VARNFRRAAELIAIPDERILAI 90 (141)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9998999886106987999999
No 10
>1eex_G Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: a.23.2.1 PDB: 1dio_G* 1egm_G* 1egv_G* 1iwb_G* 1uc4_G* 1uc5_G* 3auj_G*
Probab=1.00 E-value=1 Score=14.40 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 9872239755534689997996
Q 003689 775 LRKNFREGDKTLAIPKSRLLKV 796 (802)
Q Consensus 775 LrkN~r~~~~~l~IP~~rlleV 796 (802)
+.+|+|++...-.||-+|++|+
T Consensus 101 ~a~NfrRAAELt~VPD~riLei 122 (173)
T 1eex_G 101 LAMNFERAAELTAVPDDRILEI 122 (173)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9998999886106987999999
Done!